Query 006044
Match_columns 663
No_of_seqs 393 out of 2268
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:28:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006044.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006044hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 7.9E-25 2.7E-29 203.3 16.5 122 29-152 8-133 (134)
2 1irz_A ARR10-B; helix-turn-hel 99.9 1E-22 3.5E-27 167.4 7.9 62 217-278 2-63 (64)
3 3mm4_A Histidine kinase homolo 99.9 1.3E-21 4.5E-26 189.9 16.4 144 8-153 16-197 (206)
4 3r0j_A Possible two component 99.9 1.7E-20 5.9E-25 186.0 23.5 135 17-153 1-142 (250)
5 3gl9_A Response regulator; bet 99.9 5E-21 1.7E-25 168.9 16.8 116 34-151 3-121 (122)
6 3f6p_A Transcriptional regulat 99.9 4.8E-21 1.6E-25 168.2 16.2 117 34-152 3-119 (120)
7 3t6k_A Response regulator rece 99.9 1.2E-20 4.2E-25 169.5 17.8 119 33-153 4-125 (136)
8 2lpm_A Two-component response 99.9 4.1E-23 1.4E-27 189.6 -0.2 113 32-150 7-120 (123)
9 2r25_B Osmosensing histidine p 99.8 1.6E-20 5.6E-25 168.0 16.2 119 33-151 2-126 (133)
10 1a04_A Nitrate/nitrite respons 99.8 7.2E-20 2.5E-24 176.3 18.6 169 31-201 3-182 (215)
11 3rqi_A Response regulator prot 99.8 1.6E-20 5.5E-25 177.9 13.2 121 32-154 6-127 (184)
12 3h1g_A Chemotaxis protein CHEY 99.8 9.9E-20 3.4E-24 161.4 17.1 118 33-151 5-126 (129)
13 3m6m_D Sensory/regulatory prot 99.8 8.1E-20 2.8E-24 165.8 16.6 120 31-152 12-136 (143)
14 2a9o_A Response regulator; ess 99.8 1.4E-19 4.9E-24 156.3 17.1 117 34-152 2-118 (120)
15 2pl1_A Transcriptional regulat 99.8 2.5E-19 8.6E-24 155.3 18.5 118 34-153 1-119 (121)
16 1kgs_A DRRD, DNA binding respo 99.8 2.8E-19 9.7E-24 172.6 20.7 120 33-154 2-122 (225)
17 3q9s_A DNA-binding response re 99.8 4.6E-20 1.6E-24 184.3 15.4 154 33-188 37-197 (249)
18 3crn_A Response regulator rece 99.8 2E-19 6.8E-24 160.1 17.8 119 33-153 3-122 (132)
19 1zgz_A Torcad operon transcrip 99.8 2.9E-19 9.8E-24 155.6 18.4 117 34-152 3-119 (122)
20 3gt7_A Sensor protein; structu 99.8 1.9E-19 6.5E-24 164.9 17.5 121 32-154 6-129 (154)
21 1yio_A Response regulatory pro 99.8 3.1E-20 1.1E-24 177.5 12.5 167 32-201 3-170 (208)
22 2qzj_A Two-component response 99.8 2E-19 6.9E-24 161.5 16.9 120 32-153 3-122 (136)
23 1xhf_A DYE resistance, aerobic 99.8 3.3E-19 1.1E-23 155.4 17.7 117 34-152 4-120 (123)
24 1dbw_A Transcriptional regulat 99.8 3E-19 1E-23 157.0 17.5 118 33-152 3-121 (126)
25 1zh2_A KDP operon transcriptio 99.8 2.2E-19 7.6E-24 155.3 16.3 119 33-153 1-119 (121)
26 1i3c_A Response regulator RCP1 99.8 3.6E-19 1.2E-23 161.9 18.3 123 31-153 6-138 (149)
27 3jte_A Response regulator rece 99.8 4.4E-19 1.5E-23 158.9 18.5 123 33-155 3-126 (143)
28 3hv2_A Response regulator/HD d 99.8 3.3E-19 1.1E-23 162.5 18.0 123 30-154 11-135 (153)
29 3lua_A Response regulator rece 99.8 5.2E-20 1.8E-24 164.7 12.1 121 32-154 3-129 (140)
30 1tmy_A CHEY protein, TMY; chem 99.8 3.1E-19 1.1E-23 154.9 16.3 116 33-150 2-119 (120)
31 1srr_A SPO0F, sporulation resp 99.8 2.6E-19 8.8E-24 156.6 15.9 116 34-151 4-120 (124)
32 1jbe_A Chemotaxis protein CHEY 99.8 5.6E-19 1.9E-23 155.0 17.6 119 32-152 3-125 (128)
33 3grc_A Sensor protein, kinase; 99.8 1.7E-19 5.7E-24 161.0 14.2 123 31-155 4-130 (140)
34 1p6q_A CHEY2; chemotaxis, sign 99.8 2.2E-19 7.6E-24 157.7 14.8 120 31-152 4-127 (129)
35 3hdg_A Uncharacterized protein 99.8 3.2E-19 1.1E-23 158.7 15.7 122 32-155 6-128 (137)
36 3hdv_A Response regulator; PSI 99.8 6E-19 2.1E-23 156.7 17.4 122 31-153 5-128 (136)
37 3b2n_A Uncharacterized protein 99.8 4E-19 1.4E-23 158.3 16.2 119 33-153 3-124 (133)
38 3heb_A Response regulator rece 99.8 5.7E-19 2E-23 160.4 17.4 122 32-153 3-136 (152)
39 3kto_A Response regulator rece 99.8 1.2E-19 4.2E-24 162.2 12.7 122 31-154 4-128 (136)
40 3h5i_A Response regulator/sens 99.8 1.2E-19 4.2E-24 163.0 12.7 122 32-154 4-126 (140)
41 1k68_A Phytochrome response re 99.8 7.1E-19 2.4E-23 155.1 17.2 122 33-154 2-133 (140)
42 3eod_A Protein HNR; response r 99.8 2.8E-19 9.6E-24 157.6 14.6 120 32-153 6-127 (130)
43 3kht_A Response regulator; PSI 99.8 5.4E-19 1.8E-23 158.8 16.7 121 32-154 4-130 (144)
44 3ilh_A Two component response 99.8 5.7E-19 2E-23 157.5 16.7 120 31-152 7-139 (146)
45 4e7p_A Response regulator; DNA 99.8 4.3E-19 1.5E-23 161.2 16.0 123 30-154 17-142 (150)
46 3nhm_A Response regulator; pro 99.8 4.5E-19 1.5E-23 156.6 15.4 120 31-154 2-124 (133)
47 1mb3_A Cell division response 99.8 3.7E-19 1.3E-23 154.9 14.5 116 34-151 2-120 (124)
48 3i42_A Response regulator rece 99.8 2.3E-19 7.9E-24 157.6 13.2 117 33-152 3-122 (127)
49 3f6c_A Positive transcription 99.8 2.3E-19 7.7E-24 158.7 12.9 121 33-155 1-123 (134)
50 3cnb_A DNA-binding response re 99.8 1.3E-18 4.4E-23 154.7 17.8 121 31-153 6-131 (143)
51 1dz3_A Stage 0 sporulation pro 99.8 5.8E-19 2E-23 156.0 15.5 119 33-153 2-124 (130)
52 1k66_A Phytochrome response re 99.8 1.2E-18 4.2E-23 155.5 17.1 123 32-154 5-140 (149)
53 3cfy_A Putative LUXO repressor 99.8 7.3E-19 2.5E-23 158.0 15.6 118 34-153 5-123 (137)
54 2oqr_A Sensory transduction pr 99.8 4.1E-19 1.4E-23 172.4 14.7 154 33-188 4-171 (230)
55 3hzh_A Chemotaxis response reg 99.8 6.7E-19 2.3E-23 161.8 15.3 119 32-150 35-155 (157)
56 1mvo_A PHOP response regulator 99.8 1.2E-18 4.1E-23 154.4 16.3 119 33-153 3-122 (136)
57 3n0r_A Response regulator; sig 99.8 9.7E-20 3.3E-24 187.5 10.4 117 33-153 160-278 (286)
58 2zay_A Response regulator rece 99.8 9.5E-19 3.3E-23 157.4 15.5 121 31-153 6-129 (147)
59 2gwr_A DNA-binding response re 99.8 4.2E-19 1.4E-23 174.4 14.3 154 33-188 5-168 (238)
60 3luf_A Two-component system re 99.8 1.1E-18 3.6E-23 176.2 17.3 122 32-154 123-247 (259)
61 3cg0_A Response regulator rece 99.8 2E-18 6.7E-23 153.4 16.9 121 32-154 8-130 (140)
62 1ys7_A Transcriptional regulat 99.8 8.5E-19 2.9E-23 170.1 15.5 154 33-188 7-174 (233)
63 4dad_A Putative pilus assembly 99.8 5.8E-19 2E-23 158.9 13.0 122 30-153 17-142 (146)
64 1s8n_A Putative antiterminator 99.8 1.1E-18 3.6E-23 167.2 15.5 122 30-153 10-132 (205)
65 3snk_A Response regulator CHEY 99.8 9.3E-20 3.2E-24 162.4 7.6 120 31-152 12-133 (135)
66 3eul_A Possible nitrate/nitrit 99.8 2.6E-18 8.7E-23 156.1 17.2 124 29-154 11-137 (152)
67 3n53_A Response regulator rece 99.8 4.9E-19 1.7E-23 158.3 12.1 120 33-155 3-125 (140)
68 3klo_A Transcriptional regulat 99.8 9E-20 3.1E-24 177.8 7.8 171 31-203 5-189 (225)
69 3lte_A Response regulator; str 99.8 2.4E-18 8.1E-23 151.7 16.1 120 31-153 4-126 (132)
70 3c3m_A Response regulator rece 99.8 1.7E-18 5.8E-23 155.2 15.4 118 33-152 3-123 (138)
71 2jba_A Phosphate regulon trans 99.8 2.9E-19 9.8E-24 156.2 10.1 118 33-152 2-122 (127)
72 3c3w_A Two component transcrip 99.8 1.3E-19 4.5E-24 177.2 8.4 167 33-201 1-177 (225)
73 3kcn_A Adenylate cyclase homol 99.8 2.5E-18 8.6E-23 156.3 16.2 122 31-154 2-125 (151)
74 1p2f_A Response regulator; DRR 99.8 4.8E-18 1.6E-22 164.0 19.1 116 33-153 2-118 (220)
75 2qxy_A Response regulator; reg 99.8 2E-18 6.8E-23 154.4 14.8 120 31-153 2-122 (142)
76 3cg4_A Response regulator rece 99.8 1.1E-18 3.6E-23 155.8 12.5 122 32-155 6-130 (142)
77 2qr3_A Two-component system re 99.8 3.8E-18 1.3E-22 151.5 15.8 119 33-153 3-127 (140)
78 3a10_A Response regulator; pho 99.8 1.7E-18 6E-23 149.3 13.0 113 34-150 2-115 (116)
79 2ayx_A Sensor kinase protein R 99.8 4.3E-18 1.5E-22 170.8 17.8 121 31-153 127-248 (254)
80 2rjn_A Response regulator rece 99.8 5.5E-18 1.9E-22 154.2 16.9 121 32-154 6-128 (154)
81 1dcf_A ETR1 protein; beta-alph 99.8 2.9E-18 9.9E-23 152.6 14.0 118 32-152 6-129 (136)
82 3dzd_A Transcriptional regulat 99.8 1.5E-18 5.3E-23 185.0 14.3 117 35-153 2-119 (368)
83 3cu5_A Two component transcrip 99.8 1.5E-18 5E-23 156.8 11.8 119 33-153 2-124 (141)
84 2qvg_A Two component response 99.8 1.1E-17 3.8E-22 149.4 16.1 120 32-151 6-134 (143)
85 2jk1_A HUPR, hydrogenase trans 99.8 1.4E-17 4.9E-22 148.9 16.5 117 34-153 2-120 (139)
86 3cz5_A Two-component response 99.8 7.9E-18 2.7E-22 153.0 14.9 120 32-153 4-126 (153)
87 1qkk_A DCTD, C4-dicarboxylate 99.8 8.9E-18 3.1E-22 153.0 15.3 120 32-153 2-122 (155)
88 3eq2_A Probable two-component 99.8 3E-18 1E-22 181.5 13.9 119 33-153 5-125 (394)
89 2gkg_A Response regulator homo 99.8 1.1E-17 3.7E-22 145.1 13.8 115 34-151 6-124 (127)
90 1w25_A Stalked-cell differenti 99.7 1.5E-17 5.2E-22 178.7 16.9 118 34-153 2-122 (459)
91 3kyj_B CHEY6 protein, putative 99.7 6.4E-18 2.2E-22 152.3 11.5 116 30-146 10-129 (145)
92 1ny5_A Transcriptional regulat 99.7 1.7E-17 5.7E-22 177.9 16.7 118 34-153 1-119 (387)
93 2qsj_A DNA-binding response re 99.7 9E-18 3.1E-22 152.5 12.2 121 33-155 3-127 (154)
94 2qv0_A Protein MRKE; structura 99.7 5.6E-17 1.9E-21 145.1 17.0 119 32-154 8-129 (143)
95 3c97_A Signal transduction his 99.7 1.2E-17 4.3E-22 149.5 12.0 116 33-153 10-131 (140)
96 2rdm_A Response regulator rece 99.7 5.1E-17 1.7E-21 142.8 15.7 119 32-153 4-124 (132)
97 2pln_A HP1043, response regula 99.7 5.5E-17 1.9E-21 144.5 15.9 117 30-152 15-133 (137)
98 3t8y_A CHEB, chemotaxis respon 99.7 3.5E-17 1.2E-21 151.9 15.1 118 31-150 23-153 (164)
99 2hqr_A Putative transcriptiona 99.7 1.8E-17 6.2E-22 160.3 13.4 149 34-188 1-158 (223)
100 3eqz_A Response regulator; str 99.7 7E-18 2.4E-22 148.6 9.1 118 33-153 3-126 (135)
101 2j48_A Two-component sensor ki 99.7 2E-17 6.9E-22 140.7 11.3 113 33-150 1-116 (119)
102 3bre_A Probable two-component 99.7 3E-17 1E-21 170.0 14.0 117 33-151 18-138 (358)
103 2b4a_A BH3024; flavodoxin-like 99.7 3E-17 1E-21 146.4 9.0 119 27-151 9-130 (138)
104 3sy8_A ROCR; TIM barrel phosph 99.7 5.3E-17 1.8E-21 173.4 12.4 120 33-153 3-129 (400)
105 1qo0_D AMIR; binding protein, 99.7 3.9E-17 1.3E-21 155.3 10.0 115 32-153 11-126 (196)
106 1dc7_A NTRC, nitrogen regulati 99.7 1.8E-18 6E-23 149.9 -2.1 118 34-153 4-122 (124)
107 1a2o_A CHEB methylesterase; ba 99.6 2E-15 6.7E-20 160.2 15.8 118 33-152 3-133 (349)
108 3luf_A Two-component system re 99.6 7.8E-16 2.7E-20 155.2 9.2 103 33-139 4-107 (259)
109 2vyc_A Biodegradative arginine 99.5 6.8E-15 2.3E-19 170.4 8.9 119 34-153 1-134 (755)
110 3cwo_X Beta/alpha-barrel prote 99.0 3.8E-10 1.3E-14 108.9 6.0 92 58-151 6-100 (237)
111 1w25_A Stalked-cell differenti 99.0 1.4E-08 4.7E-13 109.1 17.8 117 33-153 152-271 (459)
112 2ayx_A Sensor kinase protein R 97.1 0.00057 2E-08 68.0 6.4 97 31-151 9-105 (254)
113 3n75_A LDC, lysine decarboxyla 96.7 0.0021 7.3E-08 74.4 7.2 104 45-152 18-123 (715)
114 3cwo_X Beta/alpha-barrel prote 95.7 0.057 1.9E-06 51.4 10.6 81 65-146 131-220 (237)
115 3q7r_A Transcriptional regulat 95.6 0.037 1.3E-06 49.5 8.1 103 34-153 13-119 (121)
116 2yxb_A Coenzyme B12-dependent 94.0 1 3.5E-05 42.5 14.1 119 32-153 17-146 (161)
117 3q58_A N-acetylmannosamine-6-p 89.3 1.7 6E-05 43.2 10.1 98 33-134 101-209 (229)
118 3fkq_A NTRC-like two-domain pr 88.7 3.9 0.00013 42.9 12.9 105 32-151 20-127 (373)
119 1wv2_A Thiazole moeity, thiazo 88.1 2.8 9.4E-05 43.2 10.7 107 40-151 119-237 (265)
120 3igs_A N-acetylmannosamine-6-p 86.3 3.2 0.00011 41.4 10.0 98 33-134 101-209 (232)
121 1ccw_A Protein (glutamate muta 85.2 21 0.00072 32.3 14.2 106 40-148 14-132 (137)
122 2i2x_B MTAC, methyltransferase 81.6 15 0.00053 36.8 12.8 101 31-136 121-231 (258)
123 1geq_A Tryptophan synthase alp 76.5 5.5 0.00019 39.0 7.5 54 94-147 68-127 (248)
124 2htm_A Thiazole biosynthesis p 76.5 8 0.00027 39.9 8.7 107 40-151 108-228 (268)
125 1y80_A Predicted cobalamin bin 76.4 11 0.00038 36.3 9.5 98 33-135 88-197 (210)
126 2yum_A ZZZ3 protein, zinc fing 74.8 6.6 0.00023 32.1 6.3 49 222-272 8-59 (75)
127 2hzd_A Transcriptional enhance 73.7 4.1 0.00014 34.9 4.8 57 222-278 6-78 (82)
128 2l69_A Rossmann 2X3 fold prote 72.6 28 0.00097 30.7 10.0 114 35-153 4-124 (134)
129 1xi3_A Thiamine phosphate pyro 72.1 24 0.00081 33.3 10.5 69 62-134 114-189 (215)
130 3ezx_A MMCP 1, monomethylamine 71.7 11 0.00039 36.9 8.3 100 31-135 90-203 (215)
131 2ekc_A AQ_1548, tryptophan syn 71.6 11 0.00037 38.0 8.3 85 65-149 29-143 (262)
132 4fo4_A Inosine 5'-monophosphat 71.1 33 0.0011 36.6 12.3 99 32-134 119-239 (366)
133 1qop_A Tryptophan synthase alp 71.0 8.9 0.0003 38.7 7.6 71 79-149 44-143 (268)
134 3qja_A IGPS, indole-3-glycerol 70.5 47 0.0016 33.8 12.9 85 46-134 151-241 (272)
135 1r8j_A KAIA; circadian clock p 70.0 28 0.00096 36.0 10.8 87 27-115 3-90 (289)
136 2xij_A Methylmalonyl-COA mutas 69.7 41 0.0014 39.4 13.5 119 32-153 603-732 (762)
137 3ffs_A Inosine-5-monophosphate 69.0 26 0.00091 37.8 11.1 99 33-134 156-274 (400)
138 1xrs_B D-lysine 5,6-aminomutas 68.1 29 0.00097 35.5 10.6 115 32-151 119-257 (262)
139 1req_A Methylmalonyl-COA mutas 67.3 37 0.0013 39.5 12.5 117 33-152 596-723 (727)
140 3kp1_A D-ornithine aminomutase 67.2 21 0.00072 41.2 10.1 116 33-153 602-736 (763)
141 1yad_A Regulatory protein TENI 66.3 20 0.00069 34.4 8.7 69 62-134 116-191 (221)
142 3f4w_A Putative hexulose 6 pho 65.4 77 0.0026 29.9 12.6 99 33-134 77-186 (211)
143 1xm3_A Thiazole biosynthesis p 64.9 19 0.00065 36.3 8.5 88 44-135 114-207 (264)
144 3duw_A OMT, O-methyltransferas 63.4 36 0.0012 32.0 9.8 72 28-101 78-153 (223)
145 3o63_A Probable thiamine-phosp 63.3 43 0.0015 33.5 10.7 69 62-134 141-218 (243)
146 2q5c_A NTRC family transcripti 62.8 83 0.0028 30.1 12.3 56 30-85 1-57 (196)
147 3khj_A Inosine-5-monophosphate 62.6 36 0.0012 36.1 10.5 99 33-134 117-235 (361)
148 3vnd_A TSA, tryptophan synthas 62.3 14 0.00048 37.7 7.0 55 95-149 83-144 (267)
149 2cqr_A RSGI RUH-043, DNAJ homo 60.5 34 0.0012 28.3 7.8 45 222-270 18-65 (73)
150 2cu7_A KIAA1915 protein; nucle 58.7 24 0.00082 28.6 6.5 46 221-271 8-53 (72)
151 1ka9_F Imidazole glycerol phos 58.4 61 0.0021 31.4 10.7 78 67-146 155-242 (252)
152 3rht_A (gatase1)-like protein; 56.9 2.6 8.8E-05 43.0 0.4 51 32-86 3-57 (259)
153 3tr6_A O-methyltransferase; ce 56.1 43 0.0015 31.4 8.9 73 27-101 83-160 (225)
154 2yus_A SWI/SNF-related matrix- 55.2 19 0.00066 30.2 5.5 44 221-269 17-60 (79)
155 4dzz_A Plasmid partitioning pr 54.8 19 0.00066 33.1 6.1 54 32-88 29-84 (206)
156 1sui_A Caffeoyl-COA O-methyltr 54.8 79 0.0027 30.9 10.9 94 5-101 72-176 (247)
157 2gek_A Phosphatidylinositol ma 54.1 45 0.0015 33.6 9.2 107 33-151 240-348 (406)
158 3usb_A Inosine-5'-monophosphat 53.5 87 0.003 34.6 12.0 100 32-134 267-387 (511)
159 1x41_A Transcriptional adaptor 53.4 40 0.0014 26.3 6.8 45 222-270 8-52 (60)
160 1ep3_A Dihydroorotate dehydrog 53.3 34 0.0012 34.3 8.1 105 44-150 151-291 (311)
161 2w6r_A Imidazole glycerol phos 53.0 53 0.0018 32.2 9.3 68 66-135 158-229 (266)
162 1rd5_A Tryptophan synthase alp 52.8 19 0.00064 35.8 6.0 54 94-148 82-138 (262)
163 3cbg_A O-methyltransferase; cy 52.6 53 0.0018 31.5 9.1 72 28-101 92-168 (232)
164 2lci_A Protein OR36; structura 52.5 35 0.0012 30.1 6.8 39 37-75 81-119 (134)
165 2gjl_A Hypothetical protein PA 52.5 1.3E+02 0.0043 30.8 12.4 79 53-134 114-200 (328)
166 3qz6_A HPCH/HPAI aldolase; str 52.1 98 0.0034 31.1 11.2 99 49-149 6-110 (261)
167 3bo9_A Putative nitroalkan dio 51.1 86 0.0029 32.3 10.9 79 53-134 120-204 (326)
168 3c3y_A Pfomt, O-methyltransfer 51.0 50 0.0017 31.9 8.6 70 30-101 92-167 (237)
169 1ka9_F Imidazole glycerol phos 50.9 67 0.0023 31.1 9.6 68 65-134 32-103 (252)
170 1ujp_A Tryptophan synthase alp 50.7 17 0.0006 36.9 5.4 85 65-149 28-140 (271)
171 1y0e_A Putative N-acetylmannos 50.5 64 0.0022 30.7 9.2 86 46-134 107-203 (223)
172 3nav_A Tryptophan synthase alp 50.4 17 0.00058 37.2 5.3 55 94-148 84-145 (271)
173 3iot_A Maltose-binding protein 50.4 2.9 0.0001 44.3 -0.4 44 44-87 19-64 (449)
174 3fro_A GLGA glycogen synthase; 50.3 1.3E+02 0.0045 30.3 12.0 108 32-151 284-394 (439)
175 2avd_A Catechol-O-methyltransf 50.3 64 0.0022 30.2 9.1 72 28-101 89-165 (229)
176 2c6q_A GMP reductase 2; TIM ba 49.9 1.2E+02 0.0041 31.8 11.9 101 33-137 132-255 (351)
177 2tps_A Protein (thiamin phosph 49.5 48 0.0016 31.6 8.1 69 62-134 122-199 (227)
178 1geq_A Tryptophan synthase alp 49.4 25 0.00084 34.3 6.1 84 48-135 124-220 (248)
179 3r2g_A Inosine 5'-monophosphat 48.9 2.2E+02 0.0075 30.2 13.8 97 33-134 112-227 (361)
180 4avf_A Inosine-5'-monophosphat 48.4 1.1E+02 0.0039 33.4 11.8 98 33-134 241-360 (490)
181 1h5y_A HISF; histidine biosynt 48.3 78 0.0027 30.1 9.5 69 64-134 33-105 (253)
182 2cjj_A Radialis; plant develop 48.1 49 0.0017 28.6 7.1 51 224-278 10-63 (93)
183 1h5y_A HISF; histidine biosynt 48.0 1E+02 0.0034 29.4 10.2 79 65-145 155-243 (253)
184 3bw2_A 2-nitropropane dioxygen 48.0 1.2E+02 0.0042 31.5 11.7 76 56-134 144-236 (369)
185 1jcn_A Inosine monophosphate d 47.8 1.3E+02 0.0043 33.0 12.1 91 44-137 282-390 (514)
186 3tfw_A Putative O-methyltransf 47.1 86 0.0029 30.4 9.7 72 27-101 82-156 (248)
187 2w6r_A Imidazole glycerol phos 46.9 59 0.002 31.8 8.5 69 65-135 31-103 (266)
188 1mu5_A Type II DNA topoisomera 46.6 3.4 0.00012 45.5 -0.7 100 1-102 113-244 (471)
189 1eep_A Inosine 5'-monophosphat 46.0 89 0.003 33.1 10.3 89 43-134 179-284 (404)
190 3fwz_A Inner membrane protein 45.9 87 0.003 27.5 8.7 93 33-134 30-124 (140)
191 4adt_A Pyridoxine biosynthetic 45.7 1.2E+02 0.004 31.4 10.8 56 95-150 196-258 (297)
192 2bfw_A GLGA glycogen synthase; 45.6 1.7E+02 0.0058 26.3 11.7 106 33-151 70-179 (200)
193 2f9f_A First mannosyl transfer 45.1 1.5E+02 0.0053 26.5 10.5 107 33-152 50-162 (177)
194 2cqq_A RSGI RUH-037, DNAJ homo 43.8 64 0.0022 26.6 6.8 45 222-271 8-55 (72)
195 3beo_A UDP-N-acetylglucosamine 42.8 2E+02 0.0067 28.5 11.8 59 80-151 283-341 (375)
196 2z6i_A Trans-2-enoyl-ACP reduc 42.3 1.1E+02 0.0037 31.5 10.0 78 54-134 107-190 (332)
197 1tqj_A Ribulose-phosphate 3-ep 42.1 38 0.0013 33.3 6.2 82 65-149 18-108 (230)
198 1thf_D HISF protein; thermophI 41.6 96 0.0033 30.0 9.0 67 66-134 153-223 (253)
199 2v5j_A 2,4-dihydroxyhept-2-ENE 41.2 2.5E+02 0.0086 28.5 12.4 98 49-148 30-132 (287)
200 2vws_A YFAU, 2-keto-3-deoxy su 41.1 2.8E+02 0.0095 27.7 12.6 97 49-148 9-111 (267)
201 2oo3_A Protein involved in cat 40.5 19 0.00065 37.3 3.8 69 33-101 113-182 (283)
202 3c48_A Predicted glycosyltrans 39.6 1.5E+02 0.0052 30.2 10.6 108 33-151 276-390 (438)
203 2v82_A 2-dehydro-3-deoxy-6-pho 39.4 55 0.0019 31.0 6.7 77 51-134 95-175 (212)
204 3tdn_A FLR symmetric alpha-bet 39.2 79 0.0027 30.8 8.0 68 65-134 36-107 (247)
205 4fxs_A Inosine-5'-monophosphat 39.2 2E+02 0.0068 31.6 12.0 98 33-134 243-362 (496)
206 3u81_A Catechol O-methyltransf 39.1 50 0.0017 31.2 6.4 62 29-90 79-145 (221)
207 2y88_A Phosphoribosyl isomeras 39.0 1.6E+02 0.0054 28.3 10.1 67 66-134 151-224 (244)
208 2iw5_B Protein corest, REST co 38.8 40 0.0014 34.0 5.7 55 215-274 126-180 (235)
209 1rzu_A Glycogen synthase 1; gl 38.4 1.7E+02 0.0059 30.4 11.0 108 33-151 320-439 (485)
210 3ovp_A Ribulose-phosphate 3-ep 38.1 92 0.0032 30.6 8.3 82 52-134 107-196 (228)
211 3f4w_A Putative hexulose 6 pho 37.9 37 0.0013 32.1 5.2 57 93-149 39-99 (211)
212 1vzw_A Phosphoribosyl isomeras 37.8 1.3E+02 0.0045 28.9 9.3 68 65-134 147-221 (244)
213 3gnn_A Nicotinate-nucleotide p 37.2 1.1E+02 0.0036 31.9 8.8 66 60-132 213-278 (298)
214 3bul_A Methionine synthase; tr 37.1 1.2E+02 0.004 34.4 9.8 102 33-136 98-212 (579)
215 3ajx_A 3-hexulose-6-phosphate 37.1 28 0.00096 32.9 4.2 81 65-148 11-98 (207)
216 4e5v_A Putative THUA-like prot 36.5 41 0.0014 34.3 5.6 78 32-113 3-93 (281)
217 1vgv_A UDP-N-acetylglucosamine 35.8 1.6E+02 0.0053 29.4 9.8 42 105-151 300-341 (384)
218 1yxy_A Putative N-acetylmannos 35.8 1.2E+02 0.0042 29.0 8.7 83 47-134 122-214 (234)
219 3paj_A Nicotinate-nucleotide p 35.8 1.4E+02 0.0049 31.3 9.6 91 35-133 204-301 (320)
220 3l0g_A Nicotinate-nucleotide p 35.7 90 0.0031 32.5 8.0 90 36-132 181-276 (300)
221 2hnk_A SAM-dependent O-methylt 35.6 1.1E+02 0.0039 29.0 8.4 70 30-101 82-167 (239)
222 1thf_D HISF protein; thermophI 35.6 1.7E+02 0.006 28.1 9.8 68 65-134 31-102 (253)
223 1v4v_A UDP-N-acetylglucosamine 35.5 2.7E+02 0.0092 27.7 11.5 100 34-151 231-333 (376)
224 1qo2_A Molecule: N-((5-phospho 35.1 85 0.0029 30.4 7.4 78 65-145 145-239 (241)
225 4e38_A Keto-hydroxyglutarate-a 34.9 1.1E+02 0.0038 30.5 8.3 90 51-143 29-120 (232)
226 2eqr_A N-COR1, N-COR, nuclear 34.9 93 0.0032 24.4 6.3 45 218-267 8-52 (61)
227 3lab_A Putative KDPG (2-keto-3 34.8 87 0.003 31.1 7.4 80 61-143 19-99 (217)
228 3kts_A Glycerol uptake operon 34.6 51 0.0017 32.2 5.6 62 67-134 117-178 (192)
229 1qdl_B Protein (anthranilate s 34.6 21 0.00071 33.8 2.8 50 34-85 1-51 (195)
230 2iw1_A Lipopolysaccharide core 34.4 1.4E+02 0.0047 29.5 9.0 105 34-151 229-336 (374)
231 2elk_A SPCC24B10.08C protein; 33.6 77 0.0026 24.6 5.5 45 224-272 11-56 (58)
232 2l2q_A PTS system, cellobiose- 33.3 45 0.0015 28.9 4.6 78 31-114 2-84 (109)
233 2xxa_A Signal recognition part 33.2 67 0.0023 34.7 6.9 53 33-87 129-191 (433)
234 3dr5_A Putative O-methyltransf 32.7 60 0.002 31.2 5.8 68 30-101 78-149 (221)
235 3tsm_A IGPS, indole-3-glycerol 32.2 2.4E+02 0.0081 28.7 10.4 85 46-134 158-248 (272)
236 2r60_A Glycosyl transferase, g 32.2 3.2E+02 0.011 28.6 11.9 111 34-151 295-423 (499)
237 3okp_A GDP-mannose-dependent a 31.8 1E+02 0.0035 30.6 7.6 76 65-151 262-343 (394)
238 1vrd_A Inosine-5'-monophosphat 31.4 3E+02 0.01 29.7 11.8 99 33-134 249-368 (494)
239 3ceu_A Thiamine phosphate pyro 31.2 62 0.0021 31.0 5.6 69 61-134 93-171 (210)
240 1qop_A Tryptophan synthase alp 31.2 1.5E+02 0.0051 29.6 8.6 41 95-135 194-234 (268)
241 2al1_A Enolase 1, 2-phospho-D- 31.1 80 0.0027 34.3 7.1 96 40-138 219-348 (436)
242 3ffs_A Inosine-5-monophosphate 31.0 1E+02 0.0036 33.1 7.8 65 67-134 146-211 (400)
243 1qv9_A F420-dependent methylen 30.9 91 0.0031 31.9 6.8 61 74-137 61-121 (283)
244 2qzs_A Glycogen synthase; glyc 30.8 2.7E+02 0.0092 28.9 11.0 108 33-151 321-440 (485)
245 4had_A Probable oxidoreductase 30.6 3.5E+02 0.012 27.1 11.6 109 30-151 20-135 (350)
246 3l4e_A Uncharacterized peptida 29.9 2E+02 0.0068 27.8 9.0 62 33-102 27-98 (206)
247 2akz_A Gamma enolase, neural; 29.7 85 0.0029 34.1 6.9 97 40-139 217-346 (439)
248 1rd5_A Tryptophan synthase alp 29.6 1.1E+02 0.0036 30.3 7.1 41 94-134 189-229 (262)
249 1dxe_A 2-dehydro-3-deoxy-galac 29.5 4E+02 0.014 26.2 11.5 98 49-148 10-112 (256)
250 1z0s_A Probable inorganic poly 29.1 31 0.001 35.5 3.1 93 33-151 29-122 (278)
251 3tqv_A Nicotinate-nucleotide p 29.0 1.7E+02 0.0058 30.2 8.7 66 60-132 202-267 (287)
252 2f6u_A GGGPS, (S)-3-O-geranylg 28.9 50 0.0017 33.1 4.6 58 67-134 23-83 (234)
253 3o07_A Pyridoxine biosynthesis 28.7 85 0.0029 32.6 6.3 59 94-152 186-251 (291)
254 2fhp_A Methylase, putative; al 28.6 2.9E+02 0.01 24.3 9.5 68 34-101 68-138 (187)
255 2d00_A V-type ATP synthase sub 28.6 3E+02 0.01 24.1 9.7 76 33-114 3-80 (109)
256 3pfn_A NAD kinase; structural 28.2 70 0.0024 34.1 5.8 101 35-154 40-166 (365)
257 3inp_A D-ribulose-phosphate 3- 27.9 91 0.0031 31.3 6.3 83 65-149 41-130 (246)
258 1p0k_A Isopentenyl-diphosphate 27.7 5E+02 0.017 26.6 12.2 87 45-134 166-279 (349)
259 3ic5_A Putative saccharopine d 27.5 1.7E+02 0.0059 23.8 7.2 54 32-88 4-58 (118)
260 3s83_A Ggdef family protein; s 27.1 2.2E+02 0.0075 27.5 8.9 96 50-148 145-254 (259)
261 1qpo_A Quinolinate acid phosph 27.0 1.6E+02 0.0054 30.2 8.1 93 36-133 168-267 (284)
262 1g5t_A COB(I)alamin adenosyltr 26.9 1.4E+02 0.0047 29.1 7.2 57 67-123 106-169 (196)
263 2px0_A Flagellar biosynthesis 26.7 90 0.0031 31.7 6.2 59 32-93 133-194 (296)
264 3euw_A MYO-inositol dehydrogen 26.6 1.5E+02 0.0052 30.0 7.9 105 32-149 3-112 (344)
265 1tqx_A D-ribulose-5-phosphate 26.5 1.1E+02 0.0038 30.2 6.6 81 52-134 109-200 (227)
266 3iwp_A Copper homeostasis prot 26.5 2.6E+02 0.0089 28.9 9.5 90 58-148 40-150 (287)
267 2ho3_A Oxidoreductase, GFO/IDH 26.2 4.8E+02 0.016 25.9 11.6 103 34-149 2-109 (325)
268 3c3p_A Methyltransferase; NP_9 26.1 2.5E+02 0.0085 25.8 8.8 69 28-102 76-147 (210)
269 3vk5_A MOEO5; TIM barrel, tran 25.9 1.1E+02 0.0037 31.8 6.5 56 80-136 200-257 (286)
270 3qhp_A Type 1 capsular polysac 25.6 2.3E+02 0.0077 24.6 8.0 107 32-151 31-139 (166)
271 2khz_A C-MYC-responsive protei 25.6 2E+02 0.007 26.6 8.0 115 30-152 8-151 (165)
272 3jy6_A Transcriptional regulat 25.6 2.6E+02 0.0088 26.6 9.0 64 45-115 25-94 (276)
273 2qfm_A Spermine synthase; sper 25.6 3E+02 0.01 29.3 10.1 56 34-89 212-277 (364)
274 1viz_A PCRB protein homolog; s 25.4 90 0.0031 31.3 5.8 54 67-134 23-83 (240)
275 3ot5_A UDP-N-acetylglucosamine 25.0 4.7E+02 0.016 27.2 11.6 43 104-151 318-360 (403)
276 3tqp_A Enolase; energy metabol 24.6 99 0.0034 33.6 6.3 73 65-138 264-340 (428)
277 3jr2_A Hexulose-6-phosphate sy 24.6 50 0.0017 31.8 3.6 84 64-149 16-105 (218)
278 3ntv_A MW1564 protein; rossman 24.3 1.9E+02 0.0065 27.4 7.7 65 33-102 95-163 (232)
279 3l9w_A Glutathione-regulated p 24.3 1.5E+02 0.0051 31.7 7.6 93 32-134 26-121 (413)
280 1h1y_A D-ribulose-5-phosphate 24.3 73 0.0025 30.8 4.8 81 53-134 109-200 (228)
281 2x6q_A Trehalose-synthase TRET 24.1 5.6E+02 0.019 25.7 11.8 106 33-151 262-378 (416)
282 3tha_A Tryptophan synthase alp 24.0 53 0.0018 33.3 3.8 56 94-152 78-139 (252)
283 3khj_A Inosine-5-monophosphate 23.8 3.4E+02 0.012 28.5 10.1 65 67-134 107-172 (361)
284 3w01_A Heptaprenylglyceryl pho 23.6 58 0.002 32.7 3.9 59 68-135 27-87 (235)
285 2iuy_A Avigt4, glycosyltransfe 23.5 1.7E+02 0.0057 28.8 7.4 56 33-90 3-95 (342)
286 1ypf_A GMP reductase; GUAC, pu 23.3 6.1E+02 0.021 25.9 14.0 90 41-134 132-238 (336)
287 3tj4_A Mandelate racemase; eno 23.0 3.4E+02 0.012 28.2 9.9 80 65-146 209-289 (372)
288 1wgx_A KIAA1903 protein; MYB D 22.9 1.2E+02 0.0042 25.2 5.1 40 224-267 10-52 (73)
289 1izc_A Macrophomate synthase i 22.9 5.3E+02 0.018 26.9 11.3 84 64-149 50-139 (339)
290 3r3h_A O-methyltransferase, SA 22.7 52 0.0018 32.1 3.4 71 29-101 81-156 (242)
291 2gjl_A Hypothetical protein PA 22.7 2.9E+02 0.0099 28.0 9.2 63 65-136 84-146 (328)
292 3axs_A Probable N(2),N(2)-dime 22.5 2.8E+02 0.0097 29.5 9.3 77 34-116 78-160 (392)
293 3sjm_A Telomeric repeat-bindin 22.5 2.4E+02 0.0083 22.3 6.7 51 221-276 10-60 (64)
294 2xci_A KDO-transferase, 3-deox 22.3 1.4E+02 0.0048 30.7 6.8 51 96-151 294-345 (374)
295 1x1o_A Nicotinate-nucleotide p 22.2 3.1E+02 0.011 28.0 9.2 90 36-132 169-265 (286)
296 1j8m_F SRP54, signal recogniti 22.2 30 0.001 35.4 1.6 53 33-87 126-188 (297)
297 3db2_A Putative NADPH-dependen 22.1 4.3E+02 0.015 26.7 10.4 106 32-151 4-115 (354)
298 1rpx_A Protein (ribulose-phosp 21.9 2.4E+02 0.0081 26.9 7.9 57 93-149 55-114 (230)
299 2b2c_A Spermidine synthase; be 21.8 1.8E+02 0.0061 29.8 7.3 56 32-90 131-192 (314)
300 3k9c_A Transcriptional regulat 21.8 1.5E+02 0.0053 28.6 6.6 65 45-116 29-98 (289)
301 2pyy_A Ionotropic glutamate re 21.5 2.2E+02 0.0075 25.4 7.2 49 32-87 111-159 (228)
302 1ity_A TRF1; helix-turn-helix, 21.4 3E+02 0.01 21.7 7.3 56 217-277 5-60 (69)
303 1wa3_A 2-keto-3-deoxy-6-phosph 21.4 4.4E+02 0.015 24.4 9.6 80 62-144 17-98 (205)
304 3iwt_A 178AA long hypothetical 21.3 2.2E+02 0.0074 26.4 7.2 60 27-86 9-88 (178)
305 1h6d_A Precursor form of gluco 21.2 2.9E+02 0.01 29.2 9.2 108 32-150 82-198 (433)
306 3gr7_A NADPH dehydrogenase; fl 21.2 5.5E+02 0.019 26.5 11.0 39 95-133 266-304 (340)
307 3ctl_A D-allulose-6-phosphate 21.1 1.7E+02 0.0058 28.9 6.7 83 65-149 14-102 (231)
308 2cvh_A DNA repair and recombin 21.1 88 0.003 28.8 4.5 85 32-116 44-156 (220)
309 3q2i_A Dehydrogenase; rossmann 20.9 6.1E+02 0.021 25.6 11.2 107 32-151 12-124 (354)
310 4hkt_A Inositol 2-dehydrogenas 20.8 2.4E+02 0.0083 28.3 8.0 104 33-150 3-111 (331)
311 3kru_A NADH:flavin oxidoreduct 20.7 4.9E+02 0.017 27.0 10.6 69 66-134 229-305 (343)
312 1qap_A Quinolinic acid phospho 20.7 5.5E+02 0.019 26.3 10.7 90 36-133 182-278 (296)
313 2p10_A MLL9387 protein; putati 20.6 6.2E+02 0.021 26.1 10.9 76 58-136 165-260 (286)
314 3kke_A LACI family transcripti 20.5 2.1E+02 0.0073 27.7 7.4 66 44-115 32-103 (303)
315 3tsa_A SPNG, NDP-rhamnosyltran 20.5 1.9E+02 0.0064 29.1 7.2 72 33-112 1-141 (391)
316 1i1q_B Anthranilate synthase c 20.4 88 0.003 29.3 4.3 33 34-66 1-33 (192)
317 3r2g_A Inosine 5'-monophosphat 20.4 2.5E+02 0.0086 29.7 8.3 65 67-134 102-168 (361)
318 2ffh_A Protein (FFH); SRP54, s 20.4 64 0.0022 34.9 3.8 54 32-87 125-188 (425)
319 2iuy_A Avigt4, glycosyltransfe 20.3 1E+02 0.0034 30.4 5.0 105 34-150 189-306 (342)
320 1jub_A Dihydroorotate dehydrog 20.2 2.9E+02 0.0098 27.7 8.4 65 68-134 110-191 (311)
321 1rpx_A Protein (ribulose-phosp 20.2 63 0.0022 31.1 3.4 54 80-134 141-206 (230)
322 2d9a_A B-MYB, MYB-related prot 20.2 2.6E+02 0.0088 21.4 6.3 44 220-267 6-49 (60)
323 1qb3_A Cyclin-dependent kinase 20.2 22 0.00074 33.5 0.0 31 318-348 46-77 (150)
324 1jcn_A Inosine monophosphate d 20.2 2.5E+02 0.0087 30.5 8.5 66 66-134 256-323 (514)
325 3p9n_A Possible methyltransfer 20.1 3.7E+02 0.013 24.1 8.5 67 34-102 68-138 (189)
326 2fli_A Ribulose-phosphate 3-ep 20.0 88 0.003 29.6 4.3 55 79-134 131-197 (220)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=7.9e-25 Score=203.32 Aligned_cols=122 Identities=29% Similarity=0.567 Sum_probs=112.1
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---
Q 006044 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--- 104 (663)
Q Consensus 29 ~fP~giRVLIVDDD~~~re~L~~lL~~~gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~--- 104 (663)
.+.+++|||||||++..|+.++.+|+..||. |.+|.+|.+|++.+++.. |||||+|++||+|||++++++||..
T Consensus 8 ~m~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~~--~DlillD~~MP~mdG~el~~~ir~~~~~ 85 (134)
T 3to5_A 8 ILNKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD--FDFVVTDWNMPGMQGIDLLKNIRADEEL 85 (134)
T ss_dssp -CCTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTT
T ss_pred HhCCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCC
Confidence 3567789999999999999999999999985 778999999999999876 9999999999999999999999843
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 105 ~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+++|||++|++.+.+.+.+++++||++||.|||+.++|...+++++++
T Consensus 86 ~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 86 KHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp TTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 579999999999999999999999999999999999999999987653
No 2
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.87 E-value=1e-22 Score=167.35 Aligned_cols=62 Identities=65% Similarity=1.082 Sum_probs=60.3
Q ss_pred CCCCCcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 006044 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKRL 278 (663)
Q Consensus 217 ~~KKpRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHLQKyRl~LKrl 278 (663)
..+|+|++||.|||++|++||++||.++|+||+|+++|+|+|||++||+|||||||++++|+
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~ 63 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKV 63 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHcc
Confidence 56899999999999999999999999999999999999999999999999999999999986
No 3
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.87 E-value=1.3e-21 Score=189.87 Aligned_cols=144 Identities=28% Similarity=0.419 Sum_probs=108.2
Q ss_pred HHHcCCC-------CCCccccccccCCC-------------CCCCccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCH
Q 006044 8 VQSSGGS-------GYGSSRAADVAVPD-------------QFPAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQA 66 (663)
Q Consensus 8 v~~mGGs-------g~gs~~~~dl~~~d-------------~fP~giRVLIVDDD~~~re~L~~lL~~~gy-~V~tasng 66 (663)
+-+|||. |.|++|.+.+++.. ....+++||||||++..++.++.+|+..+| .|..+.++
T Consensus 16 ~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~ 95 (206)
T 3mm4_A 16 RGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSG 95 (206)
T ss_dssp ---------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSH
T ss_pred ccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCH
Confidence 3579994 99999999888731 123467999999999999999999999998 89999999
Q ss_pred HHHHHHHHHc-----------CCCceEEEEecCCCCCCHHHHHHHHhcc-----CCCcEEEEecCC-CHHHHHHHHhcCC
Q 006044 67 AVALDILRER-----------KGCFDVVLSDVHMPDMDGFKLLEHIGLE-----MDLPVIMMSADG-RVSAVMRGIRHGA 129 (663)
Q Consensus 67 ~eALelLre~-----------k~~pDLVILDI~MPdmDG~ELL~~Ir~~-----~~IPVIILSa~~-d~e~v~kAl~~GA 129 (663)
.+|++.++.. ...|||||+|+.||++||++++++|+.. +.+|||++|++. +.+.+.++++.||
T Consensus 96 ~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga 175 (206)
T 3mm4_A 96 KEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGM 175 (206)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHHHHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTC
T ss_pred HHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHHHHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCC
Confidence 9999999874 1249999999999999999999999853 789999999998 8888999999999
Q ss_pred CeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 130 CDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 130 ~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++||.||++ +|..+++++++++
T Consensus 176 ~~~l~KP~~--~L~~~i~~~l~~~ 197 (206)
T 3mm4_A 176 DAFLDKSLN--QLANVIREIESKR 197 (206)
T ss_dssp SEEEETTCT--THHHHHHHHC---
T ss_pred CEEEcCcHH--HHHHHHHHHHhhh
Confidence 999999998 8999998887654
No 4
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.87 E-value=1.7e-20 Score=186.00 Aligned_cols=135 Identities=31% Similarity=0.490 Sum_probs=114.0
Q ss_pred CccccccccCCC------CCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006044 17 GSSRAADVAVPD------QFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP 90 (663)
Q Consensus 17 gs~~~~dl~~~d------~fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MP 90 (663)
||+|+..+++.. ....+++||||||++..++.++.+|+..+|.|..+.++.+|++.+.... ||+||+|+.||
T Consensus 1 Gs~~~~~~~~~~~~~~~~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~lp 78 (250)
T 3r0j_A 1 GTHMRKGVDLVTAGTPGENTTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETR--PDAVILDVXMP 78 (250)
T ss_dssp -------------------CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCS
T ss_pred CCccccccceeeccCCCCCCCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCC
Confidence 456665555421 1234689999999999999999999999999999999999999998876 99999999999
Q ss_pred CCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 91 DMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 91 dmDG~ELL~~Ir~-~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++||++++++|+. .+++|||++|+..+.+...++++.||++||.||++.++|..+++.++++.
T Consensus 79 ~~~g~~~~~~lr~~~~~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~ 142 (250)
T 3r0j_A 79 GMDGFGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRA 142 (250)
T ss_dssp SSCHHHHHHHHHHTTCCCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999999999985 46899999999999999999999999999999999999999999998764
No 5
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.86 E-value=5e-21 Score=168.93 Aligned_cols=116 Identities=27% Similarity=0.432 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPVI 110 (663)
.+||||||++..++.++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||++||++++++++.. +++|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~~--~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFT--PDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTBC--CSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999753 579999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
++|+..+.+...++++.||++||.||++.++|...++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988763
No 6
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=4.8e-21 Score=168.23 Aligned_cols=117 Identities=30% Similarity=0.491 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+||||||++..++.++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++...++|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQ--PDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTTC--CSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+..+.....++++.||++||.||++.++|..++++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999887653
No 7
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.86 E-value=1.2e-20 Score=169.45 Aligned_cols=119 Identities=32% Similarity=0.542 Sum_probs=111.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~IPV 109 (663)
..+||||||++..++.++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||++||++++++|+. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKNL--PDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 468999999999999999999999999999999999999998765 999999999999999999999975 357999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~ 125 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILART 125 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC-
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998754
No 8
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.85 E-value=4.1e-23 Score=189.61 Aligned_cols=113 Identities=27% Similarity=0.402 Sum_probs=102.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
..+|||||||++.+++.++.+|+..||.|. +|.++.+|++.+++.. ||+||+|++||+|||++++++|+. .++|||
T Consensus 7 r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~~--~DlvllDi~mP~~~G~el~~~lr~-~~ipvI 83 (123)
T 2lpm_A 7 RRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKGQ--FDIAIIDVNLDGEPSYPVADILAE-RNVPFI 83 (123)
T ss_dssp CCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHCC--SSEEEECSSSSSCCSHHHHHHHHH-TCCSSC
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHc-CCCCEE
Confidence 468999999999999999999999999975 7999999999999865 999999999999999999999986 579999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
++|++.+... +.++|+++||.|||+.++|..++++++
T Consensus 84 ~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 84 FATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp CBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred EEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 9999987654 346899999999999999999887654
No 9
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.85 E-value=1.6e-20 Score=167.98 Aligned_cols=119 Identities=24% Similarity=0.406 Sum_probs=107.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHc---CCCceEEEEecCCCCCCHHHHHHHHhc--cCC
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHIGL--EMD 106 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy-~V~tasng~eALelLre~---k~~pDLVILDI~MPdmDG~ELL~~Ir~--~~~ 106 (663)
.++||||||++..++.++.+|+..+| .|..+.++.+|++.++.. ...||+||+|+.||++||+++++.|+. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 47899999999999999999998887 588999999999998761 124999999999999999999999975 357
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
+|||++|++.+.+...++++.||++||.||++.++|..++++++.
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999988754
No 10
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.84 E-value=7.2e-20 Score=176.25 Aligned_cols=169 Identities=18% Similarity=0.293 Sum_probs=135.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDL 107 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~I 107 (663)
..+++||||||++..++.++.+|... +|.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 3 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~ 80 (215)
T 1a04_A 3 QEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESLD--PDLILLDLNMPGMNGLETLDKLREKSLSG 80 (215)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEEETTSTTSCHHHHHHHHHHSCCCS
T ss_pred CCceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCC
Confidence 34689999999999999999999986 4877 78999999999998875 999999999999999999999975 4689
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc--------ccCCcccccccCCCchhH
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE--------NSGSLEETDHHKRGSDEI 179 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e--------~s~sl~~~~~~klt~~Ei 179 (663)
|||++|+..+.+...++++.||++||.||++.++|..++++++++......... ............++.+|.
T Consensus 81 ~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~ 160 (215)
T 1a04_A 81 RIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEMVLSEALTPVLAASLRANRATTERDVNQLTPRER 160 (215)
T ss_dssp EEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCCCCCTTTHHHHHHHC-------CCCGGGSCHHHH
T ss_pred cEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCeecCHHHHHHHHHHhcccccCCCccccCCCHHHH
Confidence 999999999999999999999999999999999999999999886432211100 000000112345788999
Q ss_pred HHHhhhccCCcchhhhhhhccc
Q 006044 180 EYASSVNEGTEGTFKAQRKRIS 201 (663)
Q Consensus 180 e~lssv~eGse~~lka~~k~Is 201 (663)
+++..+.+|.....++....++
T Consensus 161 ~vl~~l~~g~s~~~Ia~~l~is 182 (215)
T 1a04_A 161 DILKLIAQGLPNKMIARRLDIT 182 (215)
T ss_dssp HHHHHHHTTCCHHHHHHHHTCC
T ss_pred HHHHHHHcCCCHHHHHHHHCCC
Confidence 9999988887666665554443
No 11
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.83 E-value=1.6e-20 Score=177.94 Aligned_cols=121 Identities=21% Similarity=0.343 Sum_probs=112.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||++||++++++|+. .+++|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 83 (184)
T 3rqi_A 6 SDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAEK--FEFITVXLHLGNDSGLSLIAPLCDLQPDARIL 83 (184)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTSC--CSEEEECSEETTEESHHHHHHHHHHCTTCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhCC--CCEEEEeccCCCccHHHHHHHHHhcCCCCCEE
Confidence 3579999999999999999999999999999999999999997755 999999999999999999999974 5789999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
++|++.+.+.+.++++.||++||.||++.++|..++++++++..
T Consensus 84 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 84 VLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999998876543
No 12
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.83 E-value=9.9e-20 Score=161.41 Aligned_cols=118 Identities=29% Similarity=0.554 Sum_probs=108.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IP 108 (663)
++|||||||++..++.++.+|+..+|. |..+.++.+|++.+.... .||+||+|++||+++|++++++|+.. +.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANA-DTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHCT-TCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999999999985 889999999999887652 49999999999999999999999853 5799
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
||++|++.+.....++++.||++||.||++.++|..+++.+++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999998764
No 13
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.83 E-value=8.1e-20 Score=165.76 Aligned_cols=120 Identities=28% Similarity=0.450 Sum_probs=106.1
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-----cC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-----EM 105 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-----~~ 105 (663)
..+++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||++||++++++|+. .+
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~g~~~~~~lr~~~~~~~~ 89 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMNGLDMLKQLRVMQASGMR 89 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHHHTTCC
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhchhccCC
Confidence 45689999999999999999999999999999999999999998765 999999999999999999999973 25
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.+|||++|+..+.+...++++.||++||.||++.++|..+++.+...
T Consensus 90 ~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 90 YTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999887543
No 14
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.83 E-value=1.4e-19 Score=156.30 Aligned_cols=117 Identities=26% Similarity=0.470 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQ--PDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhCC--CCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 58999999999999999999999999999999999999998765 9999999999999999999999877889999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+..+.....++++.||++||.||++.++|...+++++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988754
No 15
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.83 E-value=2.5e-19 Score=155.31 Aligned_cols=118 Identities=27% Similarity=0.407 Sum_probs=110.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEHI--PDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 58999999999999999999999999999999999999998765 999999999999999999999974 468999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|+..+.+...++++.||++|+.||++.++|...+++++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887653
No 16
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.83 E-value=2.8e-19 Score=172.56 Aligned_cols=120 Identities=28% Similarity=0.530 Sum_probs=112.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+++|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNEP--FDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 579999999999999999999999999999999999999998765 999999999999999999999975 47899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+|++.+.+...++++.||++||.||++.++|..++++++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999987653
No 17
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.83 E-value=4.6e-20 Score=184.27 Aligned_cols=154 Identities=26% Similarity=0.359 Sum_probs=130.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIIL 112 (663)
+++||||||++..++.|+.+|...+|.|..+.++.+|++.+.... ||+||+|+.||++||++++++|+..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKAREDH--PDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 479999999999999999999999999999999999999998865 999999999999999999999988788999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccc-----cC--CcccccccCCCchhHHHHhhh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHEN-----SG--SLEETDHHKRGSDEIEYASSV 185 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~-----s~--sl~~~~~~klt~~Eie~lssv 185 (663)
|+..+.+.+.++++.||++||.||++.++|..+++.++++.......... .. .........++.+|.+++..+
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~evL~ll 194 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRTSESLSMGDLTLDPQKRLVTYKGEELRLSPKEFDILALL 194 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCCSCCEEETTEEEETTTTEEEETTEEECCCHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcccCceeECCEEEecccCEEEECCEEeecCHHHHHHHHHH
Confidence 99999999999999999999999999999999999998764322111000 00 001112235899999999888
Q ss_pred ccC
Q 006044 186 NEG 188 (663)
Q Consensus 186 ~eG 188 (663)
.++
T Consensus 195 ~~g 197 (249)
T 3q9s_A 195 IRQ 197 (249)
T ss_dssp HHS
T ss_pred HHC
Confidence 776
No 18
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.83 E-value=2e-19 Score=160.07 Aligned_cols=119 Identities=25% Similarity=0.403 Sum_probs=111.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
+++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENEF--FNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 468999999999999999999998999999999999999998765 999999999999999999999974 56899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 122 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQ 122 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999988754
No 19
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.83 E-value=2.9e-19 Score=155.55 Aligned_cols=117 Identities=21% Similarity=0.385 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+||||||++..+..++.+|...+|.|..+.++.++++.++... ||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQS--VDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcCC--CCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 58999999999999999999998999999999999999998765 9999999999999999999999877789999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988765
No 20
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.82 E-value=1.9e-19 Score=164.94 Aligned_cols=121 Identities=25% Similarity=0.400 Sum_probs=112.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IP 108 (663)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+++.. ||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~p 83 (154)
T 3gt7_A 6 RAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTR--PDLIISDVLMPEMDGYALCRWLKGQPDLRTIP 83 (154)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTCC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSC
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCC
Confidence 3579999999999999999999999999999999999999998755 9999999999999999999999854 6899
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 84 VILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987653
No 21
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.82 E-value=3.1e-20 Score=177.54 Aligned_cols=167 Identities=23% Similarity=0.344 Sum_probs=133.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
...+||||||++..++.++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii 80 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQ--HGCLVLDMRMPGMSGIELQEQLTAISDGIPIV 80 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTTS--CEEEEEESCCSSSCHHHHHHHHHHTTCCCCEE
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 3468999999999999999999999999999999999999887654 999999999999999999999975 4689999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCcccccccCCCchhHHHHhhhccCCc
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSLEETDHHKRGSDEIEYASSVNEGTE 190 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s~sl~~~~~~klt~~Eie~lssv~eGse 190 (663)
++|++.+.+...++++.||++||.||++.++|..++++++++............ ........++.+|.+++..+.+|..
T Consensus 81 ~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~Lt~rE~~vl~~l~~g~s 159 (208)
T 1yio_A 81 FITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNAERRQARETQD-QLEQLFSSLTGREQQVLQLTIRGLM 159 (208)
T ss_dssp EEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHTSCHHHHHHHHHHTTTCC
T ss_pred EEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhhhhHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHcCCc
Confidence 999999988899999999999999999999999999998875432211100000 0011123578888888888877765
Q ss_pred chhhhhhhccc
Q 006044 191 GTFKAQRKRIS 201 (663)
Q Consensus 191 ~~lka~~k~Is 201 (663)
...++....++
T Consensus 160 ~~~Ia~~l~is 170 (208)
T 1yio_A 160 NKQIAGELGIA 170 (208)
T ss_dssp HHHHHHHHTCC
T ss_pred HHHHHHHcCCC
Confidence 55555544443
No 22
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.82 E-value=2e-19 Score=161.48 Aligned_cols=120 Identities=21% Similarity=0.364 Sum_probs=111.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
..++||||||++..++.++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....+|||+
T Consensus 3 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~ 80 (136)
T 2qzj_A 3 LQTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSNK--YDLIFLEIILSDGDGWTLCKKIRNVTTCPIVY 80 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHccCCCCCEEE
Confidence 3579999999999999999999998999999999999999998765 99999999999999999999998666899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 81 MTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp EESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988654
No 23
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.82 E-value=3.3e-19 Score=155.37 Aligned_cols=117 Identities=21% Similarity=0.417 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMS 113 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILS 113 (663)
.+||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++..+.+|+|++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEYD--INLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 58999999999999999999988999999999999999998765 9999999999999999999999866889999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+..+.....++++.||++||.||++.++|...+++++++
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 120 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSR 120 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999988765
No 24
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.82 E-value=3e-19 Score=156.98 Aligned_cols=118 Identities=25% Similarity=0.461 Sum_probs=109.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
+.+||||||++..++.++.+|...+|.|..+.++.++++.+.... ||+||+|+.||+++|++++++++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDVR--NGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGCC--SEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 468999999999999999999998999999999999999987654 999999999999999999999975 46899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+|++.+.+...++++.||++||.||++.++|..++++++++
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEH 121 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTT
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988753
No 25
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.82 E-value=2.2e-19 Score=155.30 Aligned_cols=119 Identities=28% Similarity=0.367 Sum_probs=110.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIIL 112 (663)
+++||||||++..+..++.+|...+|.+..+.++.+++..+.... ||+||+|+.||+++|++++++++..+.+|+|++
T Consensus 1 m~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~ 78 (121)
T 1zh2_A 1 MTNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATRK--PDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVL 78 (121)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEE
Confidence 368999999999999999999998999999999999999988765 999999999999999999999987678999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|+..+.+...++++.||++||.||++.++|...+++++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 79 SARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999887653
No 26
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.82 E-value=3.6e-19 Score=161.89 Aligned_cols=123 Identities=18% Similarity=0.290 Sum_probs=110.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHc-----CCCceEEEEecCCCCCCHHHHHHHHhc
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRER-----KGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy--~V~tasng~eALelLre~-----k~~pDLVILDI~MPdmDG~ELL~~Ir~ 103 (663)
...++||||||++..++.++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.|+.
T Consensus 6 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~ 85 (149)
T 1i3c_A 6 NPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQ 85 (149)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 3458999999999999999999998776 788999999999999752 124999999999999999999999985
Q ss_pred c---CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 104 E---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 104 ~---~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
. +.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++++..
T Consensus 86 ~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 86 NPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp CTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred CcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 4 5789999999999999999999999999999999999999999987654
No 27
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.82 E-value=4.4e-19 Score=158.86 Aligned_cols=123 Identities=26% Similarity=0.464 Sum_probs=113.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
+++||||||++..++.++.+|...+|.|..+.++.+|++.+......||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 57999999999999999999999999999999999999999853345999999999999999999999974 56899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~ 155 (663)
+|+..+.+...++++.||++||.||++.++|..+++++++++..
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 126 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKL 126 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999886543
No 28
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.82 E-value=3.3e-19 Score=162.46 Aligned_cols=123 Identities=28% Similarity=0.438 Sum_probs=114.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
...+++||||||++..+..++.+|...+|.|..+.++.+|++.+++.. |||||+|+.||+++|++++++|+. .+.+|
T Consensus 11 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 88 (153)
T 3hv2_A 11 VTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTT 88 (153)
T ss_dssp CCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSE
T ss_pred ccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcCC--CCEEEEeCCCCcCcHHHHHHHHHhHCCCCe
Confidence 456789999999999999999999999999999999999999998865 999999999999999999999974 47899
Q ss_pred EEEEecCCCHHHHHHHHhcC-CCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 109 VIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~G-A~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
||++|+..+.+...++++.| |++||.||++.++|..++++++++..
T Consensus 89 ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~ 135 (153)
T 3hv2_A 89 RILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQH 135 (153)
T ss_dssp EEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhH
Confidence 99999999999999999999 99999999999999999999987653
No 29
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.82 E-value=5.2e-20 Score=164.73 Aligned_cols=121 Identities=17% Similarity=0.280 Sum_probs=112.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHH-cCCCceEEEEecCCC-CCCHHHHHHHHhc---cC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMP-DMDGFKLLEHIGL---EM 105 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~-~gy~V~tasng~eALelLre-~k~~pDLVILDI~MP-dmDG~ELL~~Ir~---~~ 105 (663)
.+++||||||++..+..++.+|.. .+|.|..+.++.+|++.+++ .. ||+||+|+.|| +++|++++++|+. .+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~~~--~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ 80 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDLDS--ITLIIMDIAFPVEKEGLEVLSAIRNNSRTA 80 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTCCC--CSEEEECSCSSSHHHHHHHHHHHHHSGGGT
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcCCC--CcEEEEeCCCCCCCcHHHHHHHHHhCcccC
Confidence 467999999999999999999999 89999999999999999987 54 99999999999 9999999999975 57
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
.+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 81 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (140)
T 3lua_A 81 NTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQ 129 (140)
T ss_dssp TCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC--
T ss_pred CCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999987653
No 30
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.82 E-value=3.1e-19 Score=154.90 Aligned_cols=116 Identities=28% Similarity=0.485 Sum_probs=107.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
+++||||||++..+..++.+|+..+|. +..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~~--~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 468999999999999999999988998 568999999999998865 999999999999999999999974 4789999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
++|+..+.+...++++.||++||.||++.++|..++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988764
No 31
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.82 E-value=2.6e-19 Score=156.62 Aligned_cols=116 Identities=25% Similarity=0.466 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKER--PDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 58999999999999999999998999999999999999998765 999999999999999999999975 578999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|+..+.+...++++.||++||.||++.++|..+++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLP 120 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999987753
No 32
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=5.6e-19 Score=154.97 Aligned_cols=119 Identities=32% Similarity=0.546 Sum_probs=109.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~I 107 (663)
..++||||||++..+..++.+|...+| .|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGG--YGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTCC--CCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 457899999999999999999998888 7899999999999987654 999999999999999999999985 3578
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|||++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~ 125 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 125 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
No 33
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.81 E-value=1.7e-19 Score=161.04 Aligned_cols=123 Identities=24% Similarity=0.390 Sum_probs=112.3
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~I 107 (663)
..+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (140)
T 3grc_A 4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARRP--YAAMTVDLNLPDQDGVSLIRALRRDSRTRDL 81 (140)
T ss_dssp -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHTSGGGTTC
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCcccCCC
Confidence 34579999999999999999999999999999999999999998865 999999999999999999999975 4689
Q ss_pred cEEEEecCCCHHHHH-HHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006044 108 PVIMMSADGRVSAVM-RGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (663)
Q Consensus 108 PVIILSa~~d~e~v~-kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~ 155 (663)
|||++|+..+.+... ++++.||++||.||++.++|..++++++++...
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~ 130 (140)
T 3grc_A 82 AIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAE 130 (140)
T ss_dssp EEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC-
T ss_pred CEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCC
Confidence 999999988887777 899999999999999999999999999987643
No 34
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.81 E-value=2.2e-19 Score=157.71 Aligned_cols=120 Identities=27% Similarity=0.468 Sum_probs=110.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MD 106 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~ 106 (663)
..+++||||||++..+..++.+|...+| .|..+.++.+|++.++... ||+||+|+.||+++|++++++++.. +.
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (129)
T 1p6q_A 4 AEKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNP--HHLVISDFNMPKMDGLGLLQAVRANPATKK 81 (129)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTSC--CSEEEECSSSCSSCHHHHHHHHTTCTTSTT
T ss_pred cccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcCC--CCEEEEeCCCCCCCHHHHHHHHhcCccccC
Confidence 4567999999999999999999998888 7889999999999998754 9999999999999999999999863 57
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 82 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 82 AAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp CEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988753
No 35
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.81 E-value=3.2e-19 Score=158.66 Aligned_cols=122 Identities=21% Similarity=0.366 Sum_probs=113.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
.+++||||||++..++.++.+|...+|.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHA--PDVIITDIRMPKLGGLEMLDRIKAGGAKPYVI 83 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCCCEEE
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 4579999999999999999999998999999999999999998876 999999999999999999999974 4689999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~ 155 (663)
++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 84 VISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp ECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999887543
No 36
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.81 E-value=6e-19 Score=156.67 Aligned_cols=122 Identities=24% Similarity=0.315 Sum_probs=111.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc--CCCc
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE--MDLP 108 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~--~~IP 108 (663)
+.+.+||||||++..++.++.+|...+|.|..+.++.+|+..+.... .||+||+|+.||+++|+++++.|+.. +.+|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~ 83 (136)
T 3hdv_A 5 AARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQK-RIGLMITDLRMQPESGLDLIRTIRASERAALS 83 (136)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHTSTTTTCE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhCC-CCcEEEEeccCCCCCHHHHHHHHHhcCCCCCC
Confidence 45689999999999999999999999999999999999999998743 49999999999999999999999864 7899
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
||++|+..+.+...++++.||++||.||++.++|..++++++.+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (136)
T 3hdv_A 84 IIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIG 128 (136)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred EEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999987654
No 37
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.81 E-value=4e-19 Score=158.31 Aligned_cols=119 Identities=18% Similarity=0.283 Sum_probs=108.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
+++||||||++..++.++.+|...+ +.|..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~~--~dlvilD~~lp~~~g~~~~~~l~~~~~~~~i 80 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEYN--PNVVILDIEMPGMTGLEVLAEIRKKHLNIKV 80 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHTTCSCEE
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHHHCCCCcE
Confidence 4689999999999999999999775 56788999999999998765 999999999999999999999975 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 124 (133)
T 3b2n_A 81 IIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGE 124 (133)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC--
T ss_pred EEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999887653
No 38
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.81 E-value=5.7e-19 Score=160.38 Aligned_cols=122 Identities=23% Similarity=0.407 Sum_probs=109.9
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-------cCCCceEEEEecCCCCCCHHHHHHHHh
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-------RKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy--~V~tasng~eALelLre-------~k~~pDLVILDI~MPdmDG~ELL~~Ir 102 (663)
.+++||||||++..++.++.+|...++ .|..+.++.+|++.++. ....||+||+|+.||+++|++++++|+
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr 82 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVK 82 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 457999999999999999999999988 89999999999999961 123599999999999999999999997
Q ss_pred c---cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 103 L---EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 103 ~---~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
. .+.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++.+..
T Consensus 83 ~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 83 ENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp HSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 5 46899999999999999999999999999999999999999999986543
No 39
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.81 E-value=1.2e-19 Score=162.18 Aligned_cols=122 Identities=20% Similarity=0.274 Sum_probs=111.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhc-cCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGL-EMDL 107 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPd--mDG~ELL~~Ir~-~~~I 107 (663)
...++||||||++..+..++.+|+..+|.|..+.++.+|++.+++.. ||+||+|+.||+ ++|++++++|+. .+.+
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~ 81 (136)
T 3kto_A 4 NHHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISDD--AIGMIIEAHLEDKKDSGIELLETLVKRGFHL 81 (136)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCTT--EEEEEEETTGGGBTTHHHHHHHHHHHTTCCC
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhccC--CCEEEEeCcCCCCCccHHHHHHHHHhCCCCC
Confidence 34579999999999999999999999999999999999999887654 999999999999 999999999975 4689
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
|||++|+..+.+...++++.||++||.||++.++|..++++++.+..
T Consensus 82 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~ 128 (136)
T 3kto_A 82 PTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAK 128 (136)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC
T ss_pred CEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999987653
No 40
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.81 E-value=1.2e-19 Score=162.99 Aligned_cols=122 Identities=21% Similarity=0.296 Sum_probs=111.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhccCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPd-mDG~ELL~~Ir~~~~IPVI 110 (663)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.|+..+.+|||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii 82 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVV 82 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEE
Confidence 357999999999999999999999999999999999999999862 24999999999995 9999999999877899999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
++|+..+.+.+.++++.||++||.||++.++|..++++++++..
T Consensus 83 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 126 (140)
T 3h5i_A 83 FLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYE 126 (140)
T ss_dssp EEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999998888899999999999999999999999999987653
No 41
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.81 E-value=7.1e-19 Score=155.10 Aligned_cols=122 Identities=19% Similarity=0.311 Sum_probs=111.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC-----CCceEEEEecCCCCCCHHHHHHHHhcc-
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK-----GCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy--~V~tasng~eALelLre~k-----~~pDLVILDI~MPdmDG~ELL~~Ir~~- 104 (663)
+++||||||++..+..++.+|...++ .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.|+..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999888 8999999999999998610 249999999999999999999999864
Q ss_pred --CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 105 --~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+.+|||++|+..+.+...++++.|+++||.||++.++|..+++++++...
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 133 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFWL 133 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999987653
No 42
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.81 E-value=2.8e-19 Score=157.64 Aligned_cols=120 Identities=26% Similarity=0.445 Sum_probs=104.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
.+++||||||++..+..++.+|...+|.+..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGFT--PDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTCC--CSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 4579999999999999999999999999999999999999997655 999999999999999999999974 4689999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~-s~eeLk~~Iq~VLrkk 153 (663)
++|+..+.+...++++.||++||.||+ +.++|..+++++++++
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~ 127 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPS 127 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC--
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchh
Confidence 999999999999999999999999999 8999999999988654
No 43
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.81 E-value=5.4e-19 Score=158.83 Aligned_cols=121 Identities=17% Similarity=0.303 Sum_probs=112.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMD 106 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~--V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~ 106 (663)
.+++||||||++..+..++.+|...++. |..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~lr~~~~~~~ 81 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAK--YDLIILDIGLPIANGFEVMSAVRKPGANQH 81 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCC--CSEEEECTTCGGGCHHHHHHHHHSSSTTTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCC--CCEEEEeCCCCCCCHHHHHHHHHhcccccC
Confidence 4579999999999999999999998887 889999999999998755 999999999999999999999986 468
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHHHHHhh
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKRW 154 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~-s~eeLk~~Iq~VLrkk~ 154 (663)
+|||++|+..+.+...++++.||++||.||+ +.++|..++++++++..
T Consensus 82 ~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 82 TPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp CCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 99999999999998754
No 44
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.81 E-value=5.7e-19 Score=157.55 Aligned_cols=120 Identities=19% Similarity=0.310 Sum_probs=111.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHH-----cCCCceEEEEecCCCCCCHHHHHHHHhc
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRE-----RKGCFDVVLSDVHMPDMDGFKLLEHIGL 103 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy--~V~tasng~eALelLre-----~k~~pDLVILDI~MPdmDG~ELL~~Ir~ 103 (663)
..+++||||||++..+..++.+|...++ .|..+.++.+|++.+++ .. ||+||+|+.||+++|+++++.|+.
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~ 84 (146)
T 3ilh_A 7 RKIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRW--PSIICIDINMPGINGWELIDLFKQ 84 (146)
T ss_dssp CCEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCC--CSEEEEESSCSSSCHHHHHHHHHH
T ss_pred CccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCC--CCEEEEcCCCCCCCHHHHHHHHHH
Confidence 4678999999999999999999999998 89999999999999987 54 999999999999999999999975
Q ss_pred -----cCCCcEEEEecCCCHHHHHHHHhcC-CCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 104 -----EMDLPVIMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 104 -----~~~IPVIILSa~~d~e~v~kAl~~G-A~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.+.+|||++|+..+.+...+++..| |++||.||++.++|..+++++...
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~ 139 (146)
T 3ilh_A 85 HFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNE 139 (146)
T ss_dssp HCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC
T ss_pred hhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 4689999999999999999999999 999999999999999999988654
No 45
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.81 E-value=4.3e-19 Score=161.22 Aligned_cols=123 Identities=22% Similarity=0.327 Sum_probs=112.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMD 106 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~ 106 (663)
...++|||||||++..++.++.+|...+ +.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~ 94 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKES--VDIAILDVEMPVKTGLEVLEWIRSEKLE 94 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTSC--CSEEEECSSCSSSCHHHHHHHHHHTTCS
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhccC--CCEEEEeCCCCCCcHHHHHHHHHHhCCC
Confidence 4467899999999999999999999876 78999999999999998765 999999999999999999999975 568
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 95 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 142 (150)
T 4e7p_A 95 TKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRK 142 (150)
T ss_dssp CEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCC
T ss_pred CeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCE
Confidence 999999999999999999999999999999999999999999987643
No 46
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.81 E-value=4.5e-19 Score=156.56 Aligned_cols=120 Identities=25% Similarity=0.329 Sum_probs=105.0
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~I 107 (663)
...++||||||++..+..++.+|+ .+|.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+. .+.+
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~ 78 (133)
T 3nhm_A 2 SLKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAHP--PDVLISDVNMDGMDGYALCGHFRSEPTLKHI 78 (133)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHSC--CSEEEECSSCSSSCHHHHHHHHHHSTTTTTC
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhCCccCCC
Confidence 346799999999999999999998 7899999999999999998865 999999999999999999999985 3589
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
|||++|+..+.+. .++++.||++||.||++.++|..++++++++..
T Consensus 79 pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 124 (133)
T 3nhm_A 79 PVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAE 124 (133)
T ss_dssp CEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhc
Confidence 9999999988877 899999999999999999999999999998754
No 47
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.81 E-value=3.7e-19 Score=154.94 Aligned_cols=116 Identities=22% Similarity=0.401 Sum_probs=102.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPVI 110 (663)
.+||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENK--PDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 48999999999999999999999999999999999999998765 9999999999999999999999753 579999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
++|+..+.+...++++.||++||.||++.++|..+++++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 120 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLE 120 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHS
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 99999888888999999999999999999999999988764
No 48
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.80 E-value=2.3e-19 Score=157.56 Aligned_cols=117 Identities=21% Similarity=0.272 Sum_probs=107.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~IPV 109 (663)
+++||||||++..++.++.+|...+|.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTRG--YDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 479999999999999999999999999999999999999998865 999999999999999999999985 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|++|+..+.+. .+++..||++||.||++.++|.+.+++..+.
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 122 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGH 122 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC--
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhcc
Confidence 99999988887 8899999999999999999999999987654
No 49
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.80 E-value=2.3e-19 Score=158.67 Aligned_cols=121 Identities=17% Similarity=0.235 Sum_probs=109.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
++|||||||++..++.++.+|...+|.+. .+.++.+|++.+++.. ||+||+|+.||+++|++++++|+. .+.+|||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii 78 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETLK--PDIVIIDVDIPGVNGIQVLETLRKRQYSGIII 78 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTCCSEEE
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhcC--CCEEEEecCCCCCChHHHHHHHHhcCCCCeEE
Confidence 37999999999999999999999999987 8999999999998876 999999999999999999999974 4689999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~ 155 (663)
++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 79 ~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 123 (134)
T 3f6c_A 79 IVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCY 123 (134)
T ss_dssp EEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCB
T ss_pred EEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEE
Confidence 999999999999999999999999999999999999999876543
No 50
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.80 E-value=1.3e-18 Score=154.74 Aligned_cols=121 Identities=26% Similarity=0.354 Sum_probs=111.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRR-CLYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EM 105 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~-~gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~ 105 (663)
..+++||||||++..+..++.+|.. .+|. |..+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~ 83 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTVK--PDVVMLDLMMVGMDGFSICHRIKSTPATA 83 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHTC--CSEEEEETTCTTSCHHHHHHHHHTSTTTT
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhcC--CCEEEEecccCCCcHHHHHHHHHhCcccc
Confidence 4568999999999999999999998 8999 999999999999998865 999999999999999999999986 46
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
.+|||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 84 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 131 (143)
T 3cnb_A 84 NIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQK 131 (143)
T ss_dssp TSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTT
T ss_pred CCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhh
Confidence 899999999999999999999999999999999999999999998765
No 51
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.80 E-value=5.8e-19 Score=155.97 Aligned_cols=119 Identities=28% Similarity=0.469 Sum_probs=108.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCc
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLP 108 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~--~~~IP 108 (663)
+++||||||++..++.++.+|... +|.+. .+.++.+|++.++... ||+||+|+.||+++|++++++|+. .+.+|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~ 79 (130)
T 1dz3_A 2 SIKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEKR--PDILLLDIIMPHLDGLAVLERIRAGFEHQPN 79 (130)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHHCSSCCE
T ss_pred ceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCc
Confidence 368999999999999999999987 78765 8999999999998765 999999999999999999999975 36789
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 80 VIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999887653
No 52
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=1.2e-18 Score=155.53 Aligned_cols=123 Identities=23% Similarity=0.373 Sum_probs=112.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC--------CCceEEEEecCCCCCCHHHHHHHH
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK--------GCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy--~V~tasng~eALelLre~k--------~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
.+++||||||++..+..++.+|...+| .|..+.++.+|++.++... ..||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l 84 (149)
T 1k66_A 5 ATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEI 84 (149)
T ss_dssp TTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHH
Confidence 457899999999999999999999988 8999999999999998610 249999999999999999999999
Q ss_pred hcc---CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 102 GLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 102 r~~---~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+.. +.+|||++|+..+.+...++++.|+++||.||++.++|..+++++++...
T Consensus 85 ~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 140 (149)
T 1k66_A 85 KQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYWL 140 (149)
T ss_dssp TTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHH
T ss_pred HhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHhh
Confidence 864 67999999999999999999999999999999999999999999987653
No 53
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.80 E-value=7.3e-19 Score=158.01 Aligned_cols=118 Identities=26% Similarity=0.453 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERSK--PQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHHC--CSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 38999999999999999999988999999999999999998865 999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 123 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRA 123 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988754
No 54
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.80 E-value=4.1e-19 Score=172.37 Aligned_cols=154 Identities=24% Similarity=0.346 Sum_probs=128.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIIL 112 (663)
+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+..+.+|||++
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~l 81 (230)
T 2oqr_A 4 ATSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRAG--ADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMV 81 (230)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 369999999999999999999999999999999999999998765 999999999999999999999987788999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccc----cccccCCc----------ccccccCCCchh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENK----EHENSGSL----------EETDHHKRGSDE 178 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~k----e~e~s~sl----------~~~~~~klt~~E 178 (663)
|+..+.+...++++.||++||.||++.++|..++++++++...... ........ .......++.+|
T Consensus 82 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE 161 (230)
T 2oqr_A 82 TARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRGGDDDSEMSDGVLESGPVRMDVERHVVSVNGDTITLPLKE 161 (230)
T ss_dssp ECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTTTCTTSTTCCSCEEETTEEEETTTTEEEESSBCCCCCHHH
T ss_pred eCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcccccccccccceeecCEEEeccccEEEECCeeeecCHHH
Confidence 9999999999999999999999999999999999999876422111 00000000 011224588899
Q ss_pred HHHHhhhccC
Q 006044 179 IEYASSVNEG 188 (663)
Q Consensus 179 ie~lssv~eG 188 (663)
.+++..+.++
T Consensus 162 ~~vL~~l~~~ 171 (230)
T 2oqr_A 162 FDLLEYLMRN 171 (230)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9998887766
No 55
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.80 E-value=6.7e-19 Score=161.77 Aligned_cols=119 Identities=26% Similarity=0.387 Sum_probs=110.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
.+++||||||++..++.|+.+|+..+|.+. .+.++.+|++.+++....|||||+|+.||+++|++++++|+. .+.+||
T Consensus 35 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~i 114 (157)
T 3hzh_A 35 IPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARV 114 (157)
T ss_dssp EECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCE
T ss_pred CceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcE
Confidence 457999999999999999999999999988 999999999999887213899999999999999999999974 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
|++|+..+.+...++++.||++||.||++.++|..++++++
T Consensus 115 i~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred EEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998765
No 56
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.80 E-value=1.2e-18 Score=154.38 Aligned_cols=119 Identities=28% Similarity=0.501 Sum_probs=110.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVII 111 (663)
+.+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETEK--PDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhcC--CCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 468999999999999999999999999999999999999998765 9999999999999999999999754 6899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|+..+.....++++.||++||.||++.++|...+++++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 122 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999998888899999999999999999999999999987653
No 57
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.80 E-value=9.7e-20 Score=187.53 Aligned_cols=117 Identities=23% Similarity=0.339 Sum_probs=108.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MP-dmDG~ELL~~Ir~~~~IPVI 110 (663)
+.+||||||++.++..++.+|+..||.|. .+.+|.+|++.+.+.. |||||+|++|| +|||+++++.|+...++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~~--~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRRT--PGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHCC--CSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhCC--CCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 35899999999999999999999999999 9999999999999865 99999999999 79999999999866699999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++|++.+ ...++++.||++||.||++.++|..++++++...
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~ 278 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFH 278 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHS
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhC
Confidence 9999853 4677999999999999999999999999998764
No 58
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.79 E-value=9.5e-19 Score=157.38 Aligned_cols=121 Identities=18% Similarity=0.362 Sum_probs=112.6
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDL 107 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~I 107 (663)
..+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+
T Consensus 6 ~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 83 (147)
T 2zay_A 6 GKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTH--PHLIITEANMPKISGMDLFNSLKKNPQTASI 83 (147)
T ss_dssp --CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHTSTTTTTS
T ss_pred CCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcCC--CCEEEEcCCCCCCCHHHHHHHHHcCcccCCC
Confidence 45689999999999999999999999999999999999999998875 999999999999999999999985 4689
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 84 pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 84 PVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp CEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998765
No 59
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.79 E-value=4.2e-19 Score=174.45 Aligned_cols=154 Identities=25% Similarity=0.402 Sum_probs=127.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIIL 112 (663)
.++||||||++..++.++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+....+|||++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~l 82 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELR--PDLVLLDLMLPGMNGIDVCRVLRADSGVPIVML 82 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEE
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEE
Confidence 368999999999999999999999999999999999999998765 999999999999999999999987678999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcccccccccCCc----------ccccccCCCchhHHHH
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENSGSL----------EETDHHKRGSDEIEYA 182 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s~sl----------~~~~~~klt~~Eie~l 182 (663)
|+..+.+.+.++++.||++||.||++.++|..+++.++++.............. .......++.+|.+++
T Consensus 83 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL 162 (238)
T 2gwr_A 83 TAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRNDDEPAEMLSIADVEIDVPAHKVTRNGEQISLTPLEFDLL 162 (238)
T ss_dssp EETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCCSSCCCCEEEETTEEEETTTTEEEETTEEECCCHHHHHHH
T ss_pred eCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhcccCcccceecCceEEcccccEEEECCEEcccCHHHHHHH
Confidence 999999889999999999999999999999999999887542211110000000 0112245888999988
Q ss_pred hhhccC
Q 006044 183 SSVNEG 188 (663)
Q Consensus 183 ssv~eG 188 (663)
..+.++
T Consensus 163 ~~l~~~ 168 (238)
T 2gwr_A 163 VALARK 168 (238)
T ss_dssp HHHHHS
T ss_pred HHHHHC
Confidence 887766
No 60
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.79 E-value=1.1e-18 Score=176.16 Aligned_cols=122 Identities=30% Similarity=0.402 Sum_probs=112.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IP 108 (663)
..++||||||++..++.+...|+..+|.|..+.++.+|++.++... .||+||+|+.||++||++++++|+.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~~-~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQHP-AIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHCT-TEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcCC-CCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 4679999999999999999999999999999999999999998652 48999999999999999999999853 3689
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
||++|++.+.+...++++.||++||.||++.++|...++++++...
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999987653
No 61
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.79 E-value=2e-18 Score=153.37 Aligned_cols=121 Identities=21% Similarity=0.333 Sum_probs=113.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhccCCCcE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEMDLPV 109 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MP-dmDG~ELL~~Ir~~~~IPV 109 (663)
.+++||||||++..++.++.+|...+|.|. .+.++.+|++.++... ||+||+|+.|| +++|+++++.|+..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~~--~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDLR--PDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhCC--CCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 467999999999999999999999899998 5999999999998876 99999999998 8999999999975588999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
|++|+..+.+...++++.||++||.||++.++|..++++++++..
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~ 130 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKK 130 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999987653
No 62
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.79 E-value=8.5e-19 Score=170.10 Aligned_cols=154 Identities=31% Similarity=0.429 Sum_probs=128.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
.++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATENR--PDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 469999999999999999999999999999999999999998765 999999999999999999999975 47899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhcc--c-ccccccCCc----------ccccccCCCchh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNE--N-KEHENSGSL----------EETDHHKRGSDE 178 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~--~-ke~e~s~sl----------~~~~~~klt~~E 178 (663)
+|+..+.+...++++.||++||.||++.++|..++++++++.... . ......... .......++.+|
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE 164 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRGSTATSSSETITVGPLEVDIPGRRARVNGVDVDLTKRE 164 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHHCCCCCCCCEEEETTEEEETTTTEEEETTEECCCCHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhccccccccCcccccCCeEEccCccEEEECCEEeccCHHH
Confidence 999999888899999999999999999999999999998875431 1 110000000 011224578899
Q ss_pred HHHHhhhccC
Q 006044 179 IEYASSVNEG 188 (663)
Q Consensus 179 ie~lssv~eG 188 (663)
.+++..+.++
T Consensus 165 ~~vL~~l~~g 174 (233)
T 1ys7_A 165 FDLLAVLAEH 174 (233)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9998888777
No 63
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.79 E-value=5.8e-19 Score=158.95 Aligned_cols=122 Identities=19% Similarity=0.323 Sum_probs=111.9
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHH--cCCCceEEEEecCCCCCCHHHHHHHHhc-cC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRE--RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM 105 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~g-y~V~tasng~eALelLre--~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~ 105 (663)
...+.+||||||++..+..|+.+|...+ |.|..+.++.+++..+.+ .. |||||+|+.||+++|++++++|+. .+
T Consensus 17 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~ 94 (146)
T 4dad_A 17 FQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDA--FDILMIDGAALDTAELAAIEKLSRLHP 94 (146)
T ss_dssp CGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTT--CSEEEEECTTCCHHHHHHHHHHHHHCT
T ss_pred cCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCC--CCEEEEeCCCCCccHHHHHHHHHHhCC
Confidence 3467899999999999999999999988 999999999999887765 44 999999999999999999999974 56
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
.+|||++|+..+.+.+.++++.||++||.||++.++|..+++++++++
T Consensus 95 ~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 95 GLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp TCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred CCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999999998754
No 64
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.79 E-value=1.1e-18 Score=167.20 Aligned_cols=122 Identities=26% Similarity=0.361 Sum_probs=112.4
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
++..++||||||++..+..++.+|...+|.|. .+.++.+|++.++... ||+||+|+.||+++|+++++.|+.....|
T Consensus 10 ~~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~~--~dlvi~D~~~p~~~g~~~~~~l~~~~~~p 87 (205)
T 1s8n_A 10 AAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELHK--PDLVIMDVKMPRRDGIDAASEIASKRIAP 87 (205)
T ss_dssp -CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHC--CSEEEEESSCSSSCHHHHHHHHHHTTCSC
T ss_pred cCCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhcC--CCEEEEeCCCCCCChHHHHHHHHhcCCCC
Confidence 34457999999999999999999999999988 8999999999998875 99999999999999999999998666679
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
||++|++.+.+...++++.||++||.||++.++|..++++++++.
T Consensus 88 ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 132 (205)
T 1s8n_A 88 IVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRF 132 (205)
T ss_dssp EEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999988754
No 65
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.79 E-value=9.3e-20 Score=162.45 Aligned_cols=120 Identities=18% Similarity=0.148 Sum_probs=109.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~g-y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
..+++||||||++..+..++.+|+..+ |.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 12 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 89 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADTR--PGIVILDLGGGDLLGKPGIVEARALWATVP 89 (135)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTCC--CSEEEEEEETTGGGGSTTHHHHHGGGTTCC
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhccC--CCEEEEeCCCCCchHHHHHHHHHhhCCCCc
Confidence 456799999999999999999999999 99999999999999887654 999999999999999999999975 45899
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
||++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 90 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 90 LIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999887653
No 66
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.79 E-value=2.6e-18 Score=156.09 Aligned_cols=124 Identities=25% Similarity=0.330 Sum_probs=111.5
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cC
Q 006044 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM 105 (663)
Q Consensus 29 ~fP~giRVLIVDDD~~~re~L~~lL~~~gy~--V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~ 105 (663)
..+.+.|||||||++..++.++.+|...++. |..+.++.+|++.+++.. ||+||+|+.||+++|+++++.|+. .+
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHL--PDVALLDYRMPGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHHC--CSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 3467789999999999999999999988754 568999999999998876 999999999999999999999974 56
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
.+|||++|+..+.+...++++.||++||.||++.++|..+++.++++..
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~ 137 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRD 137 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC-
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCe
Confidence 8999999999999999999999999999999999999999999987653
No 67
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.79 E-value=4.9e-19 Score=158.34 Aligned_cols=120 Identities=21% Similarity=0.313 Sum_probs=102.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPV 109 (663)
+++||||||++..+..++.+|... |.|..+.++.+|++.+++.. ||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHHH--PDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHHC--CSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 479999999999999999999987 99999999999999998876 9999999999999999999999854 68999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~ 155 (663)
|++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 125 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNY 125 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHH
Confidence 9999999988889999999999999999999999999999887543
No 68
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.79 E-value=9e-20 Score=177.77 Aligned_cols=171 Identities=10% Similarity=0.017 Sum_probs=131.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHH-HHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDI-LRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EM 105 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasng~eALel-Lre~k~~pDLVILDI~MPdmDG~ELL~~Ir~--~~ 105 (663)
..+++||||||++..++.++.+|+. .+|.|. .+.++.+++.. +.... ||+||+|++||++||++++++|+. .+
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~ 82 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESRS--IQMLVIDYSRISDDVLTDYSSFKHISCP 82 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGGG--CCEEEEEGGGCCHHHHHHHHHHHHHHCT
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhccC--CCEEEEeCCCCCCCHHHHHHHHHHhhCC
Confidence 3568999999999999999999984 588875 44566666653 55544 999999999999999999999976 68
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccc---------ccCCcccccccCCCc
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHE---------NSGSLEETDHHKRGS 176 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e---------~s~sl~~~~~~klt~ 176 (663)
++|||++|++.+.+....+++.||++||.||++.++|..+++.++++......... ............++.
T Consensus 83 ~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~ 162 (225)
T 3klo_A 83 DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMWLTRKLAQEYILHYRAGNSVVTSQMYAKLTK 162 (225)
T ss_dssp TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCBCCHHHHHHHHHHHHTTCCCCCCHHHHTSCH
T ss_pred CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEeeCHHHHHHHHHHhhcccccccccccccCCH
Confidence 89999999999988999999999999999999999999999999876533221100 000011112345889
Q ss_pred hhHHHHhhhccCCcchhhhhhhccccc
Q 006044 177 DEIEYASSVNEGTEGTFKAQRKRISAK 203 (663)
Q Consensus 177 ~Eie~lssv~eGse~~lka~~k~Is~K 203 (663)
+|.+++..+.+|.....++....++.+
T Consensus 163 rE~~vL~~l~~g~s~~~Ia~~l~~s~~ 189 (225)
T 3klo_A 163 REQQIIKLLGSGASNIEIADKLFVSEN 189 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCCHH
Confidence 999999998888766666655554443
No 69
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.79 E-value=2.4e-18 Score=151.73 Aligned_cols=120 Identities=23% Similarity=0.368 Sum_probs=102.8
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC---CC
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM---DL 107 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~---~I 107 (663)
..+++||||||++..+..++.+|...+|.|..+.++.+|++.+++.. ||+||+|+.||+++|++++++|+... ..
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~ 81 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTFE--PAIMTLDLSMPKLDGLDVIRSLRQNKVANQP 81 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTC--CSEEEEESCBTTBCHHHHHHHHHTTTCSSCC
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhcCccCCC
Confidence 34679999999999999999999999999999999999999998765 99999999999999999999998543 34
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+||+++..++. ...++++.||++||.||++.++|..+++++..+.
T Consensus 82 ~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (132)
T 3lte_A 82 KILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEG 126 (132)
T ss_dssp EEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC--
T ss_pred eEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCC
Confidence 55555555544 7889999999999999999999999999887654
No 70
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.79 E-value=1.7e-18 Score=155.15 Aligned_cols=118 Identities=30% Similarity=0.428 Sum_probs=106.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPV 109 (663)
+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +.+||
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNATP--PDLVLLDIMMEPMDGWETLERIKTDPATRDIPV 80 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhccC--CCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCE
Confidence 468999999999999999999999999999999999999998765 9999999999999999999999753 47899
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|++|+..+......++..|+++||.||++.++|..++++++++
T Consensus 81 i~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~ 123 (138)
T 3c3m_A 81 LMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLAR 123 (138)
T ss_dssp EEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSC
T ss_pred EEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHH
Confidence 9999988766666667778899999999999999999988754
No 71
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.79 E-value=2.9e-19 Score=156.23 Aligned_cols=118 Identities=27% Similarity=0.445 Sum_probs=109.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPV 109 (663)
+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|++++++++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (127)
T 2jba_A 2 ARRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPW--PDLILLAWMLPGGSGIQFIKHLRRESMTRDIPV 79 (127)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSSC--CSEEEEESEETTEEHHHHHHHHHTSTTTTTSCE
T ss_pred CcEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhccC--CCEEEEecCCCCCCHHHHHHHHHhCcccCCCCE
Confidence 368999999999999999999998999999999999999887544 9999999999999999999999854 68999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
|++|+..+.+...++++.||++||.||++.++|...+++++++
T Consensus 80 i~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 122 (127)
T 2jba_A 80 VMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRR 122 (127)
T ss_dssp EEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHC
T ss_pred EEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999988764
No 72
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.78 E-value=1.3e-19 Score=177.20 Aligned_cols=167 Identities=22% Similarity=0.256 Sum_probs=135.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCC-CeE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCL-YNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~g-y~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
+++||||||++..++.++.+|...+ |.+ ..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 1 m~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 78 (225)
T 3c3w_A 1 MVKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAAR--PDVAVLDVRLPDGNGIELCRDLLSRMPDLRC 78 (225)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSEETTEEHHHHHHHHHHHCTTCEE
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 4799999999999999999999876 874 58999999999998865 999999999999999999999974 578999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhccccccccc--CCc-----ccccccCCCchhHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWNENKEHENS--GSL-----EETDHHKRGSDEIEYA 182 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~~~ke~e~s--~sl-----~~~~~~klt~~Eie~l 182 (663)
|++|+..+.+...++++.||++||.||++.++|..+++.++++........... ... .......++.+|.+++
T Consensus 79 i~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LT~rE~~vL 158 (225)
T 3c3w_A 79 LILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSLLDNRAAAALMAKLRGAAEKQDPLSGLTDQERTLL 158 (225)
T ss_dssp EEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHSCTTTTSCHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCeeeCHHHHHHHHHhcccccccccccCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999988754322110000 000 0012345889999999
Q ss_pred hhhccCCcchhhhhhhccc
Q 006044 183 SSVNEGTEGTFKAQRKRIS 201 (663)
Q Consensus 183 ssv~eGse~~lka~~k~Is 201 (663)
..+.+|.....++....++
T Consensus 159 ~~l~~g~s~~eIa~~l~is 177 (225)
T 3c3w_A 159 GLLSEGLTNKQIADRMFLA 177 (225)
T ss_dssp HHHHTTCCHHHHHHHHTCC
T ss_pred HHHHCCCCHHHHHHHhCCC
Confidence 9988887666666555443
No 73
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.78 E-value=2.5e-18 Score=156.30 Aligned_cols=122 Identities=25% Similarity=0.458 Sum_probs=111.4
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
..+++||||||++..++.++.+|+. +|.|..+.++.+|++.+++.. +||+||+|+.||+++|+++++.|+. .+.+||
T Consensus 2 ~~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~~-~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 79 (151)
T 3kcn_A 2 SLNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKSD-PFSVIMVDMRMPGMEGTEVIQKARLISPNSVY 79 (151)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHSC-CCSEEEEESCCSSSCHHHHHHHHHHHCSSCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcCC-CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEE
Confidence 3467999999999999999999976 899999999999999998754 3699999999999999999999974 578999
Q ss_pred EEEecCCCHHHHHHHHhcC-CCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 110 IMMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~G-A~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
|++|+..+.+...++++.| +++||.||++.++|..+++.++++..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~ 125 (151)
T 3kcn_A 80 LMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYD 125 (151)
T ss_dssp EEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999987653
No 74
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.78 E-value=4.8e-18 Score=164.05 Aligned_cols=116 Identities=27% Similarity=0.372 Sum_probs=108.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVII 111 (663)
+++||||||++..++.++.+|...+ .|..+.++.+|++.+ . .||+||+|+.||+++|+++++.|+.. +.+|||+
T Consensus 2 m~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~--~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~ 76 (220)
T 1p2f_A 2 MWKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE--E--AFHVVVLDVMLPDYSGYEICRMIKETRPETWVIL 76 (220)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC--S--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc--C--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 4799999999999999999999888 899999999999877 3 49999999999999999999999854 7899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 77 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 77 LTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp EESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 999999999999999999999999999999999999998764
No 75
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.78 E-value=2e-18 Score=154.39 Aligned_cols=120 Identities=24% Similarity=0.363 Sum_probs=110.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
..+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+ ||+++|+++++.|+. .+.+||
T Consensus 2 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pi 78 (142)
T 2qxy_A 2 SLTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRREK--IDLVFVDV-FEGEESLNLIRRIREEFPDTKV 78 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTSC--CSEEEEEC-TTTHHHHHHHHHHHHHCTTCEE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhccC--CCEEEEeC-CCCCcHHHHHHHHHHHCCCCCE
Confidence 34679999999999999999999999999999999999999998754 99999999 999999999999974 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 79 i~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 122 (142)
T 2qxy_A 79 AVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISST 122 (142)
T ss_dssp EEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC-
T ss_pred EEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999998754
No 76
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.78 E-value=1.1e-18 Score=155.81 Aligned_cols=122 Identities=25% Similarity=0.398 Sum_probs=112.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cCCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EMDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~~IP 108 (663)
.+++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKGF--SGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTCC--CEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 5679999999999999999999999999999999999999998765 999999999999999999999975 46799
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~ 155 (663)
||++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999998888888999999999999999999999999999876543
No 77
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.78 E-value=3.8e-18 Score=151.49 Aligned_cols=119 Identities=27% Similarity=0.442 Sum_probs=110.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhc-cCC
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGL-EMD 106 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MP-----dmDG~ELL~~Ir~-~~~ 106 (663)
+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.|| +++|+++++.|+. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREEN--PEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHSC--EEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcCC--CCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 579999999999999999999999999999999999999998865 99999999999 9999999999974 478
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 127 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQA 127 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999988654
No 78
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.78 E-value=1.7e-18 Score=149.29 Aligned_cols=113 Identities=25% Similarity=0.406 Sum_probs=103.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSGN--YDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHSC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcCC--CCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 58999999999999999999999999999999999999998765 999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
|+..+.. .++++.||++||.||++.++|..++++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9987665 67889999999999999999999888753
No 79
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.78 E-value=4.3e-18 Score=170.75 Aligned_cols=121 Identities=31% Similarity=0.475 Sum_probs=112.9
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcE
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPV 109 (663)
..+++||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|+.||+|||++++++|+. .+.+||
T Consensus 127 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~dlvl~D~~mp~~~G~~l~~~ir~~~~~~pi 204 (254)
T 2ayx_A 127 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH--IDIVLSDVNMPNMDGYRLTQRIRQLGLTLPV 204 (254)
T ss_dssp CCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHSC--CSEEEEEESSCSSCCHHHHHHHHHHHCCSCE
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEcCCCCCCCHHHHHHHHHhcCCCCcE
Confidence 35689999999999999999999999999999999999999998865 999999999999999999999975 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|++|++.+.+...++++.|+++||.||++.++|..++++++++.
T Consensus 205 I~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~ 248 (254)
T 2ayx_A 205 IGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERV 248 (254)
T ss_dssp EEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988654
No 80
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.78 E-value=5.5e-18 Score=154.22 Aligned_cols=121 Identities=24% Similarity=0.448 Sum_probs=112.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGTS--VQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTSC--CSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 4679999999999999999999999999999999999999998765 999999999999999999999975 4689999
Q ss_pred EEecCCCHHHHHHHHhcC-CCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 111 MMSADGRVSAVMRGIRHG-ACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~G-A~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
++|+..+.+...++++.| |++||.||++.++|..++++++++..
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~ 128 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAF 128 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999998 99999999999999999999987653
No 81
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.77 E-value=2.9e-18 Score=152.62 Aligned_cols=118 Identities=21% Similarity=0.352 Sum_probs=105.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cC----C
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EM----D 106 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~----~ 106 (663)
.+++||||||++..++.++.+|...+|.|..+.++.+|++.++.. +|+||+|+.||+++|+++++.|+. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999999999999999999999988542 499999999999999999999973 22 3
Q ss_pred C-cEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 107 L-PVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 107 I-PVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
. +||++|+..+.+...++++.||++||.||++.++|..++++++++
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 129 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEP 129 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhch
Confidence 3 578899999999999999999999999999999999999887653
No 82
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.77 E-value=1.5e-18 Score=184.99 Aligned_cols=117 Identities=31% Similarity=0.454 Sum_probs=111.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006044 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMS 113 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILS 113 (663)
+||||||++..+..++.+|+..+|.|..+.++.+|++.++... ||+||+|++||+|||++++++|+. .+.+|||++|
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~lT 79 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKELF--FPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVIT 79 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHBC--CSEEEEESEETTEETTTHHHHHHHHCTTCEEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEEe
Confidence 7999999999999999999999999999999999999998876 999999999999999999999974 5789999999
Q ss_pred cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 114 ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 114 a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++.+.+.+.++++.||++||.||++.++|..++++++.+.
T Consensus 80 ~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 80 GHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp CSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998765
No 83
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.77 E-value=1.5e-18 Score=156.79 Aligned_cols=119 Identities=27% Similarity=0.376 Sum_probs=101.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh--CCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 33 GLRVLVVDDDITCLRILEQMLRR--CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~--~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
+++||||||++..++.++.+|.+ .+|.+. .+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 2 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~~--~dlvllD~~lp~~~g~~l~~~l~~~~~~~~ 79 (141)
T 3cu5_A 2 SLRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKHP--PNVLLTDVRMPRMDGIELVDNILKLYPDCS 79 (141)
T ss_dssp CCEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTSC--CSEEEEESCCSSSCHHHHHHHHHHHCTTCE
T ss_pred cceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCc
Confidence 46899999999999999999974 477766 9999999999987654 999999999999999999999974 57899
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 80 VIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp EEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999999998888899999999999999999999999999988754
No 84
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.76 E-value=1.1e-17 Score=149.38 Aligned_cols=120 Identities=19% Similarity=0.304 Sum_probs=108.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcC----CCceEEEEecCCCCCCHHHHHHHHhcc-
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLY--NVTTCSQAAVALDILRERK----GCFDVVLSDVHMPDMDGFKLLEHIGLE- 104 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy--~V~tasng~eALelLre~k----~~pDLVILDI~MPdmDG~ELL~~Ir~~- 104 (663)
..++||||||++..++.++.+|...++ .|..+.++.+|++.++... ..||+||+|+.||+++|+++++.|+..
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~ 85 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDS 85 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSG
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCc
Confidence 457899999999999999999998887 8999999999999998611 249999999999999999999999854
Q ss_pred --CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 105 --MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 105 --~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
+.+|||++|+..+.+...++++.||++||.||++.++|..++.+...
T Consensus 86 ~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~ 134 (143)
T 2qvg_A 86 SFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQS 134 (143)
T ss_dssp GGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999988776543
No 85
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.76 E-value=1.4e-17 Score=148.94 Aligned_cols=117 Identities=25% Similarity=0.364 Sum_probs=106.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
.+||||||++..+..++.+|... |.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|+|++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEEW--VQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHSC--EEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 37999999999999999999875 99999999999999998765 999999999999999999999975 468999999
Q ss_pred ecCCCHHHHHHHHhc-CCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAVMRGIRH-GACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~-GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|+..+.....+++.. ||++||.||++.++|..+++++++..
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 120 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMF 120 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHH
Confidence 999988888889876 59999999999999999999987653
No 86
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.76 E-value=7.9e-18 Score=153.03 Aligned_cols=120 Identities=21% Similarity=0.352 Sum_probs=110.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
.+++||||||++..+..++.+|.. .+|.+. .+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~~--~dlii~D~~l~~~~g~~~~~~l~~~~~~~~ 81 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRETT--PDIVVMDLTLPGPGGIEATRHIRQWDGAAR 81 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTTC--CSEEEECSCCSSSCHHHHHHHHHHHCTTCC
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcCC--CCEEEEecCCCCCCHHHHHHHHHHhCCCCe
Confidence 357999999999999999999998 689887 8999999999998765 999999999999999999999975 46899
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
||++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 82 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 126 (153)
T 3cz5_A 82 ILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGR 126 (153)
T ss_dssp EEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTC
T ss_pred EEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999887654
No 87
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.76 E-value=8.9e-18 Score=152.99 Aligned_cols=120 Identities=30% Similarity=0.506 Sum_probs=110.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
.+++||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~~--~dliild~~l~~~~g~~~~~~l~~~~~~~pii 79 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSADF--AGIVISDIRMPGMDGLALFRKILALDPDLPMI 79 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTTC--CSEEEEESCCSSSCHHHHHHHHHHHCTTSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 3579999999999999999999999999999999999999887654 999999999999999999999974 4689999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++|+..+.+...++++.||++||.||++.++|..++++++++.
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~ 122 (155)
T 1qkk_A 80 LVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKR 122 (155)
T ss_dssp EEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999998764
No 88
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.76 E-value=3e-18 Score=181.55 Aligned_cols=119 Identities=28% Similarity=0.510 Sum_probs=107.9
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
+++||||||++..++.|+.+|+..+|.|.++.++.+|++.++... |||||+|++||+|||++++++|+. .+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQ--PDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHSC--CSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhCC--CCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 579999999999999999999999999999999999999998765 999999999999999999999975 47899999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHHHHHh
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~-s~eeLk~~Iq~VLrkk 153 (663)
+|++.+.+.+.++++.||++||.||+ ..++|..++++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 6899999988887653
No 89
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.75 E-value=1.1e-17 Score=145.14 Aligned_cols=115 Identities=17% Similarity=0.340 Sum_probs=107.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhcc---CCCcE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLE---MDLPV 109 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MP-dmDG~ELL~~Ir~~---~~IPV 109 (663)
++||||||++..++.++.+|...+|.|..+.++.+|++.++... ||+||+|+.|| +++|+++++.++.. +.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~~--~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRDR--PDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHHC--CSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhcC--CCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 58999999999999999999999999999999999999998875 99999999999 99999999999854 68999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|++ +..+.+...++++.|+++|+.||++.++|...++++++
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 999 88888888999999999999999999999999988764
No 90
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.74 E-value=1.5e-17 Score=178.73 Aligned_cols=118 Identities=32% Similarity=0.499 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPVI 110 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPVI 110 (663)
.+||||||++..+..|+.+|...+|.|..+.++.+|++.++... |||||+|+.||+|||+++++.|+.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~~--~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDL--PDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHHC--CSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcCC--CCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 48999999999999999999998999999999999999998765 9999999999999999999999853 579999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++|++.+.+.+.++++.||++||.||++.++|..+++.+++..
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~ 122 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFK 122 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887643
No 91
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.74 E-value=6.4e-18 Score=152.27 Aligned_cols=116 Identities=23% Similarity=0.312 Sum_probs=96.6
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL 107 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~-gy~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~I 107 (663)
.+.+.+||||||++..+..++.+|+.. +|.+ ..+.++.+|++.++... .||+||+|+.||+++|++++++|+.....
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~-~~dlvilD~~l~~~~g~~~~~~lr~~~~~ 88 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQP-NVDLILLDIEMPVMDGMEFLRHAKLKTRA 88 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHCT-TCCEEEECTTSCCCTTCHHHHHHHHHCCC
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcCC-CCCEEEEeCCCCCCCHHHHHHHHHhcCCC
Confidence 345678999999999999999999987 8886 48999999999998761 39999999999999999999999876669
Q ss_pred cEEEEec--CCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHH
Q 006044 108 PVIMMSA--DGRVSAVMRGIRHGACDYLIKPIREEELKNIW 146 (663)
Q Consensus 108 PVIILSa--~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~I 146 (663)
|+|++++ ..+.+.+.++++.||++||.||++.++|...+
T Consensus 89 ~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 89 KICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp EEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred CeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 9999987 66677788999999999999999966655443
No 92
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.74 E-value=1.7e-17 Score=177.87 Aligned_cols=118 Identities=29% Similarity=0.515 Sum_probs=111.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
|+||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|++||++||++++++|+. .+++|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~~--~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHSC--CSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 58999999999999999999988999999999999999998765 999999999999999999999974 578999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|++.+.+.+.++++.||+|||.||++.++|..+++++++..
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~ 119 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHR 119 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988643
No 93
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.74 E-value=9e-18 Score=152.47 Aligned_cols=121 Identities=19% Similarity=0.217 Sum_probs=100.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CC-eEEEECCHHHHHHHHHH-cCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LY-NVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy-~V~tasng~eALelLre-~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
+++||||||++..+..++.+|... ++ .|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+. .+.+|
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 80 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEADNT--VDLILLDVNLPDAEAIDGLVRLKRFDPSNA 80 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTTCC--CSEEEECC------CHHHHHHHHHHCTTSE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhccCC--CCEEEEeCCCCCCchHHHHHHHHHhCCCCe
Confidence 479999999999999999999987 77 78899999999999987 54 999999999999999999999975 46899
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhhc
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRWN 155 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~~ 155 (663)
||++|+..+.+...++++.||++||.||++.++|..++++++++...
T Consensus 81 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~ 127 (154)
T 2qsj_A 81 VALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIF 127 (154)
T ss_dssp EEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCB
T ss_pred EEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEE
Confidence 99999999989999999999999999999999999999998876543
No 94
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.74 E-value=5.6e-17 Score=145.14 Aligned_cols=119 Identities=20% Similarity=0.371 Sum_probs=104.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IP 108 (663)
.+++||||||++..+..++.+|... ++. +..+.++.+|++.++... ||+||+|+.||+++|+++++.|+.. +..|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHNK--VDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHCC--CSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhCC--CCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 4579999999999999999999875 787 458999999999998865 9999999999999999999999865 4567
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
||++|+..+ ...++++.||++||.||++.++|..+++++++...
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 888988744 56789999999999999999999999999987653
No 95
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.73 E-value=1.2e-17 Score=149.53 Aligned_cols=116 Identities=24% Similarity=0.442 Sum_probs=102.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc------cCC
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL------EMD 106 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~------~~~ 106 (663)
.++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+||+|+.||+++|+++++.|+. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~~--~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNRQ--FDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHSC--CSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcCC--CCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 369999999999999999999988999999999999999998765 999999999999999999999975 367
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|||++|+........ +.||++||.||++.++|..++++++++.
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 131 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEG 131 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC--
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCC
Confidence 8999999876554332 7899999999999999999999887654
No 96
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.73 E-value=5.1e-17 Score=142.81 Aligned_cols=119 Identities=21% Similarity=0.360 Sum_probs=107.3
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCC-CCHHHHHHHHhc-cCCCcE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD-MDGFKLLEHIGL-EMDLPV 109 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPd-mDG~ELL~~Ir~-~~~IPV 109 (663)
.+++||||||++..++.++.+|...+|.|..+.++.+|++.++.. ..||+||+|+.||+ ++|++++++|+. .+.+||
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~i 82 (132)
T 2rdm_A 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPI 82 (132)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCE
T ss_pred CCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCE
Confidence 357999999999999999999999999999999999999999875 13999999999998 999999999974 468999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|++|+..+.+...++++.| +||.||++.++|..+++++++..
T Consensus 83 i~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~ 124 (132)
T 2rdm_A 83 VYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNAR 124 (132)
T ss_dssp EEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTT
T ss_pred EEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcC
Confidence 9999999888888887776 79999999999999999988754
No 97
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.73 E-value=5.5e-17 Score=144.49 Aligned_cols=117 Identities=17% Similarity=0.244 Sum_probs=108.0
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCc
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLP 108 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~-~IP 108 (663)
...+++||||||++..+..++.+|...+|.|..+.++.+|++.++... ||+|| ||+++|+++++.|+..+ .+|
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----~~~~~g~~~~~~l~~~~~~~~ 88 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIV 88 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHSC--CSEEE----ECSTTHHHHHHHHHHHSTTSE
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcCC--CCEEE----EcCccHHHHHHHHHhcCCCcc
Confidence 456789999999999999999999999999999999999999998765 99999 89999999999997557 899
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRK 152 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~-s~eeLk~~Iq~VLrk 152 (663)
||++|+..+.+...++++.||++||.||+ +.++|..++++++++
T Consensus 89 ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 133 (137)
T 2pln_A 89 VLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 133 (137)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC-
T ss_pred EEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999 999999999887654
No 98
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.73 E-value=3.5e-17 Score=151.94 Aligned_cols=118 Identities=27% Similarity=0.359 Sum_probs=100.5
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCC-C-eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCL-Y-NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~g-y-~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
..+++||||||++..++.++.+|...+ + .+..+.++.+|++.+++.. ||+||+|+.||+++|+++++.|+....+|
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~--~dlvilD~~l~~~~g~~l~~~lr~~~~~~ 100 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIELK--PDVITMDIEMPNLNGIEALKLIMKKAPTR 100 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEECSSCSSSCHHHHHHHHHHHSCCE
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccCC--CCEEEEeCCCCCCCHHHHHHHHHhcCCce
Confidence 356899999999999999999999874 3 3558999999999998876 99999999999999999999998655599
Q ss_pred EEEEecCCCHH--HHHHHHhcCCCeEEeCCCC---------HHHHHHHHHHHH
Q 006044 109 VIMMSADGRVS--AVMRGIRHGACDYLIKPIR---------EEELKNIWQHVV 150 (663)
Q Consensus 109 VIILSa~~d~e--~v~kAl~~GA~dYLlKP~s---------~eeLk~~Iq~VL 150 (663)
||++|+..+.. .+.++++.||++||.||++ .++|..++++++
T Consensus 101 ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~ 153 (164)
T 3t8y_A 101 VIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAM 153 (164)
T ss_dssp EEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHT
T ss_pred EEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHh
Confidence 99999977654 6779999999999999999 455555555544
No 99
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.73 E-value=1.8e-17 Score=160.31 Aligned_cols=149 Identities=14% Similarity=0.178 Sum_probs=121.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC-CCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~-~IPVIIL 112 (663)
|+||||||++..+..++.+|...+|.|..+.++.+|++.+.... ||+|| ||+++|+++++.|+..+ ++|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIRN--YDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTSC--CSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcCC--CCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 58999999999999999999998999999999999999997654 99999 99999999999997556 8999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCC-CHHHHHHHHHHHHHHh--hcccc-cc--ccc-CCc-ccccccCCCchhHHHHhh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPI-REEELKNIWQHVVRKR--WNENK-EH--ENS-GSL-EETDHHKRGSDEIEYASS 184 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~-s~eeLk~~Iq~VLrkk--~~~~k-e~--e~s-~sl-~~~~~~klt~~Eie~lss 184 (663)
|+..+.+...++++.||++||.||+ +.++|..++++++++. ..... .. ... ... .......++.+|.+++..
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lt~rE~~vL~~ 154 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFWGSNVIEIGDLTISPDEEKIIYKGREVEVKGKPFEVLTH 154 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSCCCCSEEETTEEEETTTTEEEETTEEECCCSTTTHHHHH
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccccCCeEEECCEEEecccCEEEECCEEEecCHHHHHHHHH
Confidence 9999999999999999999999999 9999999999988764 11100 00 000 000 011223578889898888
Q ss_pred hccC
Q 006044 185 VNEG 188 (663)
Q Consensus 185 v~eG 188 (663)
+.++
T Consensus 155 l~~~ 158 (223)
T 2hqr_A 155 LARH 158 (223)
T ss_dssp HHHT
T ss_pred HHhC
Confidence 7766
No 100
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.73 E-value=7e-18 Score=148.56 Aligned_cols=118 Identities=22% Similarity=0.352 Sum_probs=106.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVII 111 (663)
+++||||||++..++.++.+|+..++.|..+.++.++++.++. . ||+||+|+.||+++|++++++|+. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888899999999999987754 3 999999999999999999999974 46899999
Q ss_pred EecCCCH-----HHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 112 MSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 112 LSa~~d~-----e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+|+..+. +...++++.||++||.||++.++|..+++++..+.
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~ 126 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQ 126 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhc
Confidence 9998875 67778999999999999999999999999886543
No 101
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.72 E-value=2e-17 Score=140.70 Aligned_cols=113 Identities=20% Similarity=0.245 Sum_probs=103.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPV 109 (663)
+.+||||||++..++.++.+|...+|.|..+.++.++++.++... ||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~~--~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLLQ--PIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHHC--CSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhcC--CCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 368999999999999999999999999999999999999998875 9999999999999999999999754 68999
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
|++|...+.. ++++.|+++|+.||++.++|..++++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 116 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLC 116 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHh
Confidence 9999988776 8899999999999999999998887654
No 102
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.72 E-value=3e-17 Score=170.03 Aligned_cols=117 Identities=27% Similarity=0.365 Sum_probs=107.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCc
Q 006044 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLP 108 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~-~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IP 108 (663)
..+||||||++..++.++.+|.+ .+|.|..+.++.+|++.+.... ||+||+|+.||+|||+++++.|+.. +.+|
T Consensus 18 ~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~~--~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~ 95 (358)
T 3bre_A 18 AVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQIK--PTVILQDLVMPGVDGLTLLAAYRGNPATRDIP 95 (358)
T ss_dssp CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHHC--CSEEEEESBCSSSBHHHHHHHHTTSTTTTTSC
T ss_pred CceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhCC--CCEEEEeCCCCCCCHHHHHHHHhcCcccCCCc
Confidence 35799999999999999999964 5899999999999999998865 9999999999999999999999853 5799
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
||++|++.+.+.+.++++.||++||.||++.++|..+++.+++
T Consensus 96 ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 96 IIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987754
No 103
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.70 E-value=3e-17 Score=146.40 Aligned_cols=119 Identities=16% Similarity=0.212 Sum_probs=101.7
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-cCCCceEEEEecCCCCCCHHHHHHHHhc-c
Q 006044 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE-RKGCFDVVLSDVHMPDMDGFKLLEHIGL-E 104 (663)
Q Consensus 27 ~d~fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre-~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~ 104 (663)
+...+.+++||||||++..++.++.+|...+|.|..+.++.+|++.++. .. ||+||+|+.||+++|+++++.|+. .
T Consensus 9 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~~--~dlvilD~~l~~~~g~~~~~~l~~~~ 86 (138)
T 2b4a_A 9 HHHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLST--CDLLIVSDQLVDLSIFSLLDIVKEQT 86 (138)
T ss_dssp -----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGGS--CSEEEEETTCTTSCHHHHHHHHTTSS
T ss_pred ccCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCCC--CCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 3445678899999999999999999999999999999999999999987 55 999999999999999999999985 4
Q ss_pred CCCcEEEEe-cCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 105 MDLPVIMMS-ADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 105 ~~IPVIILS-a~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
+.+|||++| +..+.+. .+++ +++||.||++.++|..+++++++
T Consensus 87 ~~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~ 130 (138)
T 2b4a_A 87 KQPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKP 130 (138)
T ss_dssp SCCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCC
T ss_pred CCCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHH
Confidence 689999999 8877666 6666 99999999999999999987654
No 104
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.69 E-value=5.3e-17 Score=173.43 Aligned_cols=120 Identities=23% Similarity=0.321 Sum_probs=105.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHh-CCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRR-CLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~-~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVI 110 (663)
+++||||||++..+..++.+|+. .+|.|.++.++.+|++.++.. ..||+||+|++||+|||++++++++.. +..+||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 47999999999999999999998 578999999999999999873 139999999999999999999999854 455667
Q ss_pred EEecCCCH-----HHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 111 MMSADGRV-----SAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 111 ILSa~~d~-----e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++|+.++. ..+.++++.||++||.||++.++|..++++++++.
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 77777766 66788999999999999999999999999988764
No 105
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.69 E-value=3.9e-17 Score=155.27 Aligned_cols=115 Identities=14% Similarity=0.128 Sum_probs=104.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVI 110 (663)
.+++||||||++..+..++.+|...+|.|..+.++.+|+ . ..||+||+|+.||++||+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 357999999999999999999998899999888877766 2 249999999999999999 88888766 889999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
++|++.+.+.+.++++.||++||.||++.++|...++.++++.
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 126 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRIS 126 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887654
No 106
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.67 E-value=1.8e-18 Score=149.88 Aligned_cols=118 Identities=35% Similarity=0.477 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIIL 112 (663)
.+||||||++..+..++.+|...+|.|..+.++.++++.+.... ||+||+|+.||+++|+++++.++. .+.+|+|++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~--~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1dc7_A 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKT--PDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (124)
T ss_dssp CCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSCC--CSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCCB
T ss_pred cEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcCC--CCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 57999999999999999999988999999999999999887644 999999999999999999999974 468999999
Q ss_pred ecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|+..+.+...++++.||++|+.||++.++|...++++++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp CCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 99988888889999999999999999999999999987653
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.64 E-value=2e-15 Score=160.22 Aligned_cols=118 Identities=30% Similarity=0.442 Sum_probs=104.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCe-EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LYN-VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy~-V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
++|||||||++..++.|+.+|+.. +|. |.++.++.+|++.+++.. ||+||+|+.||++||++++++|+....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~~--pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKFN--PDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHHC--CSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhccC--CCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 888 569999999999998876 9999999999999999999999865559999
Q ss_pred EEecCCCH--HHHHHHHhcCCCeEEeCCCCH---------HHHHHHHHHHHHH
Q 006044 111 MMSADGRV--SAVMRGIRHGACDYLIKPIRE---------EELKNIWQHVVRK 152 (663)
Q Consensus 111 ILSa~~d~--e~v~kAl~~GA~dYLlKP~s~---------eeLk~~Iq~VLrk 152 (663)
++|+..+. +...++++.||++||.||++. ++|...++++.+.
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~ 133 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARA 133 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhh
Confidence 99998775 458899999999999999983 7777777776653
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.61 E-value=7.8e-16 Score=155.20 Aligned_cols=103 Identities=21% Similarity=0.297 Sum_probs=87.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhC-CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRC-LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~-gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
+.|||||||++..++.|+..|... +|.|. +.++.+++..+... .||+||+|++||+|||++++++++.. .+|||+
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~-~~~~~~~~~~~~~~--~~dlvllD~~mP~~~G~~~~~~lr~~-~~pvi~ 79 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEID-AFDTLEGARHCQGD--EYVVALVDLTLPDAPSGEAVKVLLER-GLPVVI 79 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEE-EESSTGGGTTCCTT--TEEEEEEESCBTTBTTSHHHHHHHHT-TCCEEE
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEE-EeChHHHHHHhhcC--CCcEEEEeCCCCCCCHHHHHHHHHhC-CCCEEE
Confidence 358999999999999999999764 77775 44555666555433 59999999999999999999999863 699999
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCH
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIRE 139 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~ 139 (663)
+|++.+.+...++++.||++||.||+..
T Consensus 80 lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 80 LTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp EECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 9999999999999999999999999643
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.53 E-value=6.8e-15 Score=170.43 Aligned_cols=119 Identities=13% Similarity=0.209 Sum_probs=108.3
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCC----CCHHHHHHHH
Q 006044 34 LRVLVVDDDI-TC-------LRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPD----MDGFKLLEHI 101 (663)
Q Consensus 34 iRVLIVDDD~-~~-------re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPd----mDG~ELL~~I 101 (663)
|||||||||+ .. ++.|+..|+..||+|..+.++.+|+..++... .||+||+|++||+ +||++++++|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~~-~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSNE-AIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTTC-CCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcCC-CCcEEEEeCCCCcccccccHHHHHHHH
Confidence 4899999999 88 99999999999999999999999999998642 4999999999999 9999999999
Q ss_pred hcc-CCCcEEEEecCCC-HHHHHHHHhcCCCeEEeCCCCHHH-HHHHHHHHHHHh
Q 006044 102 GLE-MDLPVIMMSADGR-VSAVMRGIRHGACDYLIKPIREEE-LKNIWQHVVRKR 153 (663)
Q Consensus 102 r~~-~~IPVIILSa~~d-~e~v~kAl~~GA~dYLlKP~s~ee-Lk~~Iq~VLrkk 153 (663)
|+. .++|||++|+.++ .+....++..||+||+.||++..+ |...|+.++|+.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 854 5899999999877 777888999999999999999999 888888888764
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.98 E-value=3.8e-10 Score=108.92 Aligned_cols=92 Identities=24% Similarity=0.407 Sum_probs=78.0
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 58 y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
+.|..+.++.+|++.+++.. ||+||+|++||+++|++++++|+. .+..++++++.....+.+.++++.||++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~~--~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKELK--PDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHHC--CSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhcC--CCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 45666889999999998876 999999999999999999999974 455677777777778889999999999999999
Q ss_pred --CCHHHHHHHHHHHHH
Q 006044 137 --IREEELKNIWQHVVR 151 (663)
Q Consensus 137 --~s~eeLk~~Iq~VLr 151 (663)
++..++...+.+.+.
T Consensus 84 ~~~~~~~l~~~i~~~~~ 100 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFG 100 (237)
T ss_dssp HHHHCTHHHHHHHHHHT
T ss_pred cccChHHHHHHHHHHhC
Confidence 777788777776654
No 111
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.96 E-value=1.4e-08 Score=109.12 Aligned_cols=117 Identities=22% Similarity=0.295 Sum_probs=99.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc---CCCcE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE---MDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~---~~IPV 109 (663)
..+|++|||+...+..+...|.. .+.+....++.+++. .... .||+|++|+.||+|||+++++.++.. ..+|+
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~~--~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAGG--PVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHHS--SCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hccC--CCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 45899999999998888888865 467777888888863 3333 49999999999999999999999743 47899
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|++|+..+.+...++++.|+.+|+.||+..+++...+..+++.+
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~ 271 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRK 271 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988887776543
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.10 E-value=0.00057 Score=68.01 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=71.7
Q ss_pred CCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 31 PAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 31 P~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
..+.+||||||++..++.|+.+|..+|+.|..+.+. ....+|++|+|+.||+..+. ..+|
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~~---------~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEGQ---------EPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSSC---------CCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecCC---------CCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 567899999999999999999999999999887641 12359999999999876432 1255
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.++...... ....+...++.||+...++...+.+++.
T Consensus 69 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 565543210 1123556899999999888888877653
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.66 E-value=0.0021 Score=74.43 Aligned_cols=104 Identities=14% Similarity=0.164 Sum_probs=78.2
Q ss_pred HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCcEEEEecCCCHHHHHH
Q 006044 45 CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 45 ~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~~IPVIILSa~~d~e~v~k 123 (663)
..+.|...|++.||+|..+.+..+|+..++++. .++.||+|++|+ +.+++++|+ ...++||++++.......+.-
T Consensus 18 ~i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~~-~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~ 93 (715)
T 3n75_A 18 PIRELHRALERLNFQIVYPNDRDDLLKLIENNA-RLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSL 93 (715)
T ss_dssp HHHHHHHHHHHTTCEEECCSSHHHHHHHHHHCT-TEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGG
T ss_pred HHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhCC-CceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccch
Confidence 345666888888999999999999999999863 699999999886 789999997 457999999998755332211
Q ss_pred HHhcCCCeEEeCCCC-HHHHHHHHHHHHHH
Q 006044 124 GIRHGACDYLIKPIR-EEELKNIWQHVVRK 152 (663)
Q Consensus 124 Al~~GA~dYLlKP~s-~eeLk~~Iq~VLrk 152 (663)
....++++|+.+..+ .+.+...+.+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 94 NDLRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp TTSCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred hhhhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 123578899999864 55555555555443
No 114
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.71 E-value=0.057 Score=51.43 Aligned_cols=81 Identities=17% Similarity=0.251 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEec-CCCCCCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE------eC
Q 006044 65 QAAVALDILRERKGCFDVVLSDV-HMPDMDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IK 135 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI-~MPdmDG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL------lK 135 (663)
+..+.++.+.... ..+++++++ .++.++| .+++++++...++|||.+++....+...++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~~-~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKRG-AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHHT-CSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhcC-CCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 4556666666543 367999997 5666666 456777776678999999999999999999999999985 78
Q ss_pred CCCHHHHHHHH
Q 006044 136 PIREEELKNIW 146 (663)
Q Consensus 136 P~s~eeLk~~I 146 (663)
|++..+++..+
T Consensus 210 ~~~~~~~~~~l 220 (237)
T 3cwo_X 210 EIDVRELKEYL 220 (237)
T ss_dssp SSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 89888887654
No 115
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=95.62 E-value=0.037 Score=49.47 Aligned_cols=103 Identities=19% Similarity=0.195 Sum_probs=78.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCC-CCCCHHHHHHHHhc---cCCCcE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHM-PDMDGFKLLEHIGL---EMDLPV 109 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~M-PdmDG~ELL~~Ir~---~~~IPV 109 (663)
-.||+|..|...--.+++++....|.+++.....+ ...-|+|+|++.+ |+ .|.. ....-+
T Consensus 13 ~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe--------~ifS~k~~~~~dl 76 (121)
T 3q7r_A 13 KHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR--------EIRSPKSLEGSFV 76 (121)
T ss_dssp EEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT--------TCCCCTTCCSCEE
T ss_pred cEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH--------HhcCCCCCCcccE
Confidence 35889988888888999999877898876543211 1237999999864 32 1221 123347
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
|++-..=+.+.+.+.+..||. ||+.|++..-|.++|+..+|..
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 777777788889999999999 9999999999999999988753
No 116
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.03 E-value=1 Score=42.46 Aligned_cols=119 Identities=13% Similarity=0.132 Sum_probs=82.2
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCC-C-CHHHHHHHHh
Q 006044 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD-M-DGFKLLEHIG 102 (663)
Q Consensus 32 ~giRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPd-m-DG~ELL~~Ir 102 (663)
...+|++. |-+..=...+..+|+..||+|.. ....++.++.+++.. +|+|.+-..+.. + .--++++.|+
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~--~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQED--VDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHTT--CSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEeechhhHHHHHHHHHHHH
Confidence 45688888 88888889999999999999973 457788888888765 999999887653 1 1234555565
Q ss_pred cc--CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 103 LE--MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 103 ~~--~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+. .+++|++ -+..-.+....+.+.|++.++..--+.++....++.++.++
T Consensus 95 ~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 43 3566554 44444444445668999876655456666666666666543
No 117
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=89.25 E-value=1.7 Score=43.23 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=67.4
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEecC------CCCCCHHHHHHHH
Q 006044 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (663)
Q Consensus 33 giRVLIVDD----D~~~re~L~~lL~~~gy~V-~tasng~eALelLre~k~~pDLVILDI~------MPdmDG~ELL~~I 101 (663)
|..++++|- ++.....+.+.+++.+..+ ..+.+.+++....+. .+|+|.+-.+ .+...++++++++
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 445555553 2333334444445556554 467888888776653 3898864322 2234568999999
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 102 r~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+.. ++|||.-.+-.+.+.+.++++.||++.+.
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTV 209 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 766 89999998888999999999999999876
No 118
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=88.66 E-value=3.9 Score=42.89 Aligned_cols=105 Identities=12% Similarity=0.115 Sum_probs=76.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC---CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC---LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~---gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
..+|+.|+|.|+.+.+.|..+|... .+.|..|++.+.+.+.+++.+ +|++++|-.+.... .......+
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~~--~dilli~e~~~~~~-------~~~~~~~~ 90 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEYR--IDVLIAEEDFNIDK-------SEFKRNCG 90 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHHT--CSEEEEETTCCCCG-------GGGCSSCE
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcCC--CCEEEEcchhhhhh-------hhhcccCc
Confidence 4689999999999999999999753 578999999999999998875 99999998775421 11123456
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
+++++.....+ ...-...+.|--+.+++...+..++.
T Consensus 91 v~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~~ 127 (373)
T 3fkq_A 91 LAYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVYS 127 (373)
T ss_dssp EEEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHHh
Confidence 77776543221 11223478888888888766665553
No 119
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=88.06 E-value=2.8 Score=43.17 Aligned_cols=107 Identities=17% Similarity=0.128 Sum_probs=70.7
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEecCCCC-----CCHHHHHHHHhccCCCcEEEE
Q 006044 40 DDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD-----MDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~--tasng~eALelLre~k~~pDLVILDI~MPd-----mDG~ELL~~Ir~~~~IPVIIL 112 (663)
.|.....+..+ .|.+.||.|. +..+...|-.+ .+.. +++| +.+..|- ..-+++++.|++..++|||.=
T Consensus 119 pD~~~tv~aa~-~L~~~Gf~Vlpy~~dd~~~akrl-~~~G--~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~e 193 (265)
T 1wv2_A 119 PNVVETLKAAE-QLVKDGFDVMVYTSDDPIIARQL-AEIG--CIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVD 193 (265)
T ss_dssp BCHHHHHHHHH-HHHTTTCEEEEEECSCHHHHHHH-HHSC--CSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEE
T ss_pred cCHHHHHHHHH-HHHHCCCEEEEEeCCCHHHHHHH-HHhC--CCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEe
Confidence 33344444444 4445699877 45555555444 4443 7877 5555442 223789999988889999987
Q ss_pred ecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006044 113 SADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (663)
Q Consensus 113 Sa~~d~e~v~kAl~~GA~dYLl-----KP~s~eeLk~~Iq~VLr 151 (663)
.+-...+.+..++++||++.++ |--++..+...+...+.
T Consensus 194 GGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 237 (265)
T 1wv2_A 194 AGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIV 237 (265)
T ss_dssp SCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 7778899999999999999875 43446666665555543
No 120
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=86.33 E-value=3.2 Score=41.37 Aligned_cols=98 Identities=17% Similarity=0.206 Sum_probs=66.3
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEecC------CCCCCHHHHHHHH
Q 006044 33 GLRVLVVDD----DITCLRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH------MPDMDGFKLLEHI 101 (663)
Q Consensus 33 giRVLIVDD----D~~~re~L~~lL~~~gy~V-~tasng~eALelLre~k~~pDLVILDI~------MPdmDG~ELL~~I 101 (663)
|..+++++- ++.....+.+.+++.+..+ ..+.+.+++....+. ..|+|.+-.+ .....++++++++
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 445555543 2333334444445555554 467888888776653 3898864322 1233468999999
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 102 r~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+.. ++|||.-.+-.+.+.+.++++.||++.+.
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~V 209 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTV 209 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 766 99999988888899999999999999875
No 121
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=85.24 E-value=21 Score=32.32 Aligned_cols=106 Identities=13% Similarity=0.014 Sum_probs=70.5
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEecCCCCC-C-HHHHHHHHhcc-C-CCcEEEE
Q 006044 40 DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPDM-D-GFKLLEHIGLE-M-DLPVIMM 112 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~---tasng~eALelLre~k~~pDLVILDI~MPdm-D-G~ELL~~Ir~~-~-~IPVIIL 112 (663)
|-|..=...+..+|+..||+|. .....++.++.+++.. +|+|.+-..+..- . --++++.+++. . +++|++
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~v- 90 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIETK--ADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYV- 90 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHHT--CSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEE-
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhcC--CCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEE-
Confidence 5556667788889999999986 5678999999998876 9999998877431 1 22345556532 2 566554
Q ss_pred ecC-----CCHHH-HHHHHhcCCCeEEeCCCCHHHHHHHHHH
Q 006044 113 SAD-----GRVSA-VMRGIRHGACDYLIKPIREEELKNIWQH 148 (663)
Q Consensus 113 Sa~-----~d~e~-v~kAl~~GA~dYLlKP~s~eeLk~~Iq~ 148 (663)
-+. .+... ...+.+.|++.|+.---+..++...+..
T Consensus 91 GG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~ 132 (137)
T 1ccw_A 91 GGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKK 132 (137)
T ss_dssp EESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHH
T ss_pred ECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHH
Confidence 442 22222 4457789998888665666666555443
No 122
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=81.56 E-value=15 Score=36.76 Aligned_cols=101 Identities=16% Similarity=0.063 Sum_probs=70.3
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHHhCCCeEE---EECCHHHHHHHHHHcCCCceEEEEecCCCC-CCH-HHHHHHH
Q 006044 31 PAGLRVLVV----DDDITCLRILEQMLRRCLYNVT---TCSQAAVALDILRERKGCFDVVLSDVHMPD-MDG-FKLLEHI 101 (663)
Q Consensus 31 P~giRVLIV----DDD~~~re~L~~lL~~~gy~V~---tasng~eALelLre~k~~pDLVILDI~MPd-mDG-~ELL~~I 101 (663)
..+-+||++ |-|..=...+..+|+..||+|. .-...++.++.+++.. ||+|.+-..|.. +.. -++++.+
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~~--~d~V~lS~l~~~~~~~~~~~i~~l 198 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKEK--PIMLTGTALMTTTMYAFKEVNDML 198 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHHC--CSEEEEECCCTTTTTHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeeccCCHHHHHHHHHHH
Confidence 345578888 7778888899999999999985 3456777778888776 999999887753 443 3566777
Q ss_pred hc-cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 102 GL-EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 102 r~-~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
++ ..++||++--..-..+.. -+.||+.|....
T Consensus 199 ~~~~~~~~v~vGG~~~~~~~~---~~igad~~~~da 231 (258)
T 2i2x_B 199 LENGIKIPFACGGGAVNQDFV---SQFALGVYGEEA 231 (258)
T ss_dssp HTTTCCCCEEEESTTCCHHHH---HTSTTEEECSST
T ss_pred HhcCCCCcEEEECccCCHHHH---HHcCCeEEECCH
Confidence 64 356777665444444433 378987776544
No 123
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=76.49 E-value=5.5 Score=39.03 Aligned_cols=54 Identities=11% Similarity=0.156 Sum_probs=39.2
Q ss_pred HHHHHHHHhccCCCcEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHH
Q 006044 94 GFKLLEHIGLEMDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQ 147 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~~d------~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq 147 (663)
++++++++++..++||++++..+. .+.+..+++.||+..+.=....++....++
T Consensus 68 ~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 68 AFWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 377888888767889998874333 567888999999999886565555544433
No 124
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=76.45 E-value=8 Score=39.85 Aligned_cols=107 Identities=18% Similarity=0.171 Sum_probs=69.3
Q ss_pred eCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEecCCCCCCH-----HHHHHHHhc-cCC-CcEE
Q 006044 40 DDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-----FKLLEHIGL-EMD-LPVI 110 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy~V~--tasng~eALelLre~k~~pDLVILDI~MPdmDG-----~ELL~~Ir~-~~~-IPVI 110 (663)
-|.....+..+.+. +.||.|. +..+...|- .+.+.. ++.| +.+-.|-..| .++++.+++ ..+ +|||
T Consensus 108 pD~~~tv~aa~~L~-k~Gf~Vlpy~~~D~~~ak-~l~~~G--~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI 182 (268)
T 2htm_A 108 PDPLETLKAAERLI-EEDFLVLPYMGPDLVLAK-RLAALG--TATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVV 182 (268)
T ss_dssp CCHHHHHHHHHHHH-HTTCEECCEECSCHHHHH-HHHHHT--CSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBE
T ss_pred cCHHHHHHHHHHHH-HCCCEEeeccCCCHHHHH-HHHhcC--CCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEE
Confidence 34444455555555 4588876 334554444 444443 6776 6655542222 567888876 677 9999
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVR 151 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLl-----KP~s~eeLk~~Iq~VLr 151 (663)
+=.+-...+.+..++++||++.++ |.-++..+...+...+.
T Consensus 183 ~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~ 228 (268)
T 2htm_A 183 VDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVE 228 (268)
T ss_dssp EESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHH
Confidence 877788899999999999999865 44446666666555543
No 125
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=76.41 E-value=11 Score=36.29 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=68.0
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 006044 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGL 103 (663)
Q Consensus 33 giRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sng~eALelLre~k~~pDLVILDI~MPd-mD-G~ELL~~Ir~ 103 (663)
+-+||++ |-|..=...+..+|+..||+|... ...++.++.+++.+ ||+|.+-..|.. +. --++++.+++
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~--~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQ--PDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHC--CSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccccHHHHHHHHHHHHh
Confidence 4478888 777888899999999999998743 35677778887765 999999887753 22 2345666654
Q ss_pred c---CCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 104 E---MDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 104 ~---~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
. +++||++--+.-+.+.. -+.||+.|..-
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~d 197 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAPD 197 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECSS
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEECC
Confidence 3 34777765444444433 45698877553
No 126
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=74.78 E-value=6.6 Score=32.12 Aligned_cols=49 Identities=20% Similarity=0.345 Sum_probs=38.1
Q ss_pred cccccHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHHHHHHH
Q 006044 222 RVVWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASHLQKFR 272 (663)
Q Consensus 222 RVvWTvELHrkFv~AVnqLGidKAvP---KkILElMnVpgLTrenVASHLQKyR 272 (663)
+-.||.|=+..|+++|.+.|.+...| ++|-++ +++-|..++..|-++|-
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~--~~~Rt~~qcr~r~~~~l 59 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADE--LGNRTAKQVASQVQKYF 59 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHH--HSSSCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence 34799999999999999999644222 567776 57899999999966554
No 127
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=73.66 E-value=4.1 Score=34.93 Aligned_cols=57 Identities=26% Similarity=0.268 Sum_probs=37.0
Q ss_pred cccccHHHHHHHHHHHHHhccC---cc--c--------HHHHHHHh---cCCCCCHHHHHHHHHHHHHHHHHh
Q 006044 222 RVVWSVELHQQFVSAVNQLGID---KA--V--------PKRILELM---NVPGLTRENVASHLQKFRLYLKRL 278 (663)
Q Consensus 222 RVvWTvELHrkFv~AVnqLGid---KA--v--------PKkILElM---nVpgLTrenVASHLQKyRl~LKrl 278 (663)
.-+|..+|-+.|++|+..+--. |. . -.-|-+++ --.--|+.+|+||||..+..+++-
T Consensus 6 e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 6 EGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp SCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTTC
T ss_pred CCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhhh
Confidence 3489999999999999887422 11 0 01111211 112346799999999999887653
No 128
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=72.56 E-value=28 Score=30.68 Aligned_cols=114 Identities=14% Similarity=0.235 Sum_probs=62.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHH-HHHHHhc-cCCCcEEEE
Q 006044 35 RVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFK-LLEHIGL-EMDLPVIMM 112 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~E-LL~~Ir~-~~~IPVIIL 112 (663)
-|++..-|...+..++.++++.||.|.++.+..+.-+.+++.-..|..-|.=+-..+...-| .++.++. ...+-||+.
T Consensus 4 vivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiy 83 (134)
T 2l69_A 4 VIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIY 83 (134)
T ss_dssp EEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEE
T ss_pred EEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEE
Confidence 34444677777888999999999999999999998887776433344322222222222211 2222222 123333332
Q ss_pred ecCCCHHHH----HHHHhcCCCeEEeCC-CCHHHHHHHHHHHHHHh
Q 006044 113 SADGRVSAV----MRGIRHGACDYLIKP-IREEELKNIWQHVVRKR 153 (663)
Q Consensus 113 Sa~~d~e~v----~kAl~~GA~dYLlKP-~s~eeLk~~Iq~VLrkk 153 (663)
..+.... .+.-+.|. -... -++++++..++++++..
T Consensus 84 --dqdqnrleefsrevrrrgf---evrtvtspddfkkslerlirev 124 (134)
T 2l69_A 84 --DQDQNRLEEFSREVRRRGF---EVRTVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp --CSCHHHHHHHHHHHHHTTC---CEEEESSHHHHHHHHHHHHHHH
T ss_pred --eCchhHHHHHHHHHHhcCc---eEEEecChHHHHHHHHHHHHHh
Confidence 2232222 12223343 2222 35788888888887753
No 129
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=72.14 E-value=24 Score=33.32 Aligned_cols=69 Identities=14% Similarity=0.201 Sum_probs=49.6
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPd-------mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+.+..++..... .. +|.|+++-..|. ..+++.+++++...++||++..+-. .+.+.++++.||+.+..
T Consensus 114 ~~~t~~e~~~~~~-~g--~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 114 SVYSLEEALEAEK-KG--ADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp EESSHHHHHHHHH-HT--CSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred ecCCHHHHHHHHh-cC--CCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 4677777765443 33 899998754443 3478888888765688988866655 67778888999998754
No 130
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=71.67 E-value=11 Score=36.88 Aligned_cols=100 Identities=14% Similarity=0.057 Sum_probs=68.1
Q ss_pred CCccEEEEE----eCCHHHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEE--ecCCC-CCC-HHHHHH
Q 006044 31 PAGLRVLVV----DDDITCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLS--DVHMP-DMD-GFKLLE 99 (663)
Q Consensus 31 P~giRVLIV----DDD~~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVIL--DI~MP-dmD-G~ELL~ 99 (663)
+..-+|++. |-|..=...+..+|+..||+|.. -...++.++.+++.+ ||+|.+ -..|. .+. --++++
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~--~d~v~l~~S~l~~~~~~~~~~~i~ 167 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHK--GEKVLLVGSALMTTSMLGQKDLMD 167 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTT--TSCEEEEEECSSHHHHTHHHHHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcC--CCEEEEEchhcccCcHHHHHHHHH
Confidence 344578887 77788888899999999999874 346778888888876 999999 87764 233 234566
Q ss_pred HHhcc-C--CCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 100 HIGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 100 ~Ir~~-~--~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
.+++. . ++||++=-+--..+.+ -+.||+.|-..
T Consensus 168 ~l~~~~~~~~v~v~vGG~~~~~~~a---~~iGad~~~~d 203 (215)
T 3ezx_A 168 RLNEEKLRDSVKCMFGGAPVSDKWI---EEIGADATAEN 203 (215)
T ss_dssp HHHHTTCGGGSEEEEESSSCCHHHH---HHHTCCBCCSS
T ss_pred HHHHcCCCCCCEEEEECCCCCHHHH---HHhCCeEEECC
Confidence 66543 2 5777665444444433 35699888653
No 131
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=71.58 E-value=11 Score=38.02 Aligned_cols=85 Identities=18% Similarity=0.263 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHc-CCCceEEEEecCCCC--CC--------------------HHHHHHHHhccC-CCcEEEEecCCC---
Q 006044 65 QAAVALDILRER-KGCFDVVLSDVHMPD--MD--------------------GFKLLEHIGLEM-DLPVIMMSADGR--- 117 (663)
Q Consensus 65 ng~eALelLre~-k~~pDLVILDI~MPd--mD--------------------G~ELL~~Ir~~~-~IPVIILSa~~d--- 117 (663)
+.++.++.++.. ....|+|.+++-..+ .| .+++++.++... ++|+++|+-.+.
T Consensus 29 ~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~ 108 (262)
T 2ekc_A 29 DYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFR 108 (262)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHH
Confidence 334444444321 123899888874432 23 446677777655 899999853331
Q ss_pred ---HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 118 ---VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 118 ---~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
...+..+.++|+++++.-.+..+++...++.+
T Consensus 109 ~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 109 IGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp HCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHH
Confidence 34567788999999999778888776655544
No 132
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=71.13 E-value=33 Score=36.57 Aligned_cols=99 Identities=17% Similarity=0.246 Sum_probs=66.6
Q ss_pred CccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEecCCCC------------C
Q 006044 32 AGLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------M 92 (663)
Q Consensus 32 ~giRVLIVD----DD~~~re~L~~lL~~~-gy~V--~tasng~eALelLre~k~~pDLVILDI~MPd------------m 92 (663)
.+..++++| +.+...+.++.+-+.. +..| ..+.+.++|..+.+.- .|.|.+-+. |+ .
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aG---AD~I~vG~g-pGs~~~tr~~~g~g~ 194 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGV 194 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTBCHHHHHCCCC
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcC---CCEEEEecC-CCCCCCcccccCccc
Confidence 356677776 3455566666665554 4444 3588999998877653 798888321 11 2
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 93 DGFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 93 DG~ELL~~Ir---~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
..++++..+. ...++|||.--+-.+...+.+++.+||+....
T Consensus 195 p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 239 (366)
T 4fo4_A 195 PQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 239 (366)
T ss_dssp CHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 3455666554 24579999877777888899999999988754
No 133
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=70.99 E-value=8.9 Score=38.65 Aligned_cols=71 Identities=18% Similarity=0.135 Sum_probs=50.2
Q ss_pred CceEEEEecCCC--CCC--------------------HHHHHHHHhcc-CCCcEEEEecCC------CHHHHHHHHhcCC
Q 006044 79 CFDVVLSDVHMP--DMD--------------------GFKLLEHIGLE-MDLPVIMMSADG------RVSAVMRGIRHGA 129 (663)
Q Consensus 79 ~pDLVILDI~MP--dmD--------------------G~ELL~~Ir~~-~~IPVIILSa~~------d~e~v~kAl~~GA 129 (663)
..|+|-+|+-.. -+| ++++++.||.. .++||++|+-.+ -...+..+.++||
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 389998888442 233 45667788776 789998886322 1466778899999
Q ss_pred CeEEeCCCCHHHHHHHHHHH
Q 006044 130 CDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 130 ~dYLlKP~s~eeLk~~Iq~V 149 (663)
++++.-.+..+++...++.+
T Consensus 124 dgii~~d~~~e~~~~~~~~~ 143 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAA 143 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHH
Confidence 99999878777766655544
No 134
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=70.52 E-value=47 Score=33.80 Aligned_cols=85 Identities=13% Similarity=0.006 Sum_probs=58.1
Q ss_pred HHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEec---CCCCCCHHHHHHHHhcc-C-CCcEEEEecCCCHH
Q 006044 46 LRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDV---HMPDMDGFKLLEHIGLE-M-DLPVIMMSADGRVS 119 (663)
Q Consensus 46 re~L~~lL~~~gy~V-~tasng~eALelLre~k~~pDLVILDI---~MPdmDG~ELL~~Ir~~-~-~IPVIILSa~~d~e 119 (663)
...+.......|..+ ..+.+.+++...+.. . .|+|-+.- ..... +++.++++... + ++|||..++-.+.+
T Consensus 151 l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~-G--ad~IGv~~r~l~~~~~-dl~~~~~l~~~v~~~~pvVaegGI~t~e 226 (272)
T 3qja_A 151 LVSMLDRTESLGMTALVEVHTEQEADRALKA-G--AKVIGVNARDLMTLDV-DRDCFARIAPGLPSSVIRIAESGVRGTA 226 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-T--CSEEEEESBCTTTCCB-CTTHHHHHGGGSCTTSEEEEESCCCSHH
T ss_pred HHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC-C--CCEEEECCCccccccc-CHHHHHHHHHhCcccCEEEEECCCCCHH
Confidence 444445555567654 467888887666543 3 78877652 11122 35666777533 3 78999998888899
Q ss_pred HHHHHHhcCCCeEEe
Q 006044 120 AVMRGIRHGACDYLI 134 (663)
Q Consensus 120 ~v~kAl~~GA~dYLl 134 (663)
.+.+..++||+++++
T Consensus 227 dv~~l~~~GadgvlV 241 (272)
T 3qja_A 227 DLLAYAGAGADAVLV 241 (272)
T ss_dssp HHHHHHHTTCSEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999987
No 135
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=69.98 E-value=28 Score=35.96 Aligned_cols=87 Identities=10% Similarity=0.195 Sum_probs=68.7
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccC
Q 006044 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEM 105 (663)
Q Consensus 27 ~d~fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~ 105 (663)
.+.+...+.|-+.-.++.....+..+|....|.+..+.+.++.++.++.+++.+|.+|+..- +.+-..+..++. ...
T Consensus 3 ~~~~~~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~--~~~~~~~~~~L~~~g~ 80 (289)
T 1r8j_A 3 ADIVLSQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAA--NPSFRAVVQQLCFEGV 80 (289)
T ss_dssp ---CCCCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETT--STTHHHHHHHHHHTTC
T ss_pred ccccccceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeC--CCccHHHHHHHHHcCc
Confidence 34556678888999999999999999988889999999999999999998888999998761 223566777775 445
Q ss_pred CCcEEEEecC
Q 006044 106 DLPVIMMSAD 115 (663)
Q Consensus 106 ~IPVIILSa~ 115 (663)
-+|+|++-..
T Consensus 81 lLP~vil~~~ 90 (289)
T 1r8j_A 81 VVPAIVVGDR 90 (289)
T ss_dssp CCCEEEESCC
T ss_pred cccEEEeccC
Confidence 7899988654
No 136
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=69.74 E-value=41 Score=39.39 Aligned_cols=119 Identities=10% Similarity=-0.012 Sum_probs=78.5
Q ss_pred CccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHh
Q 006044 32 AGLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG 102 (663)
Q Consensus 32 ~giRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sng~eALelLre~k~~pDLVILDI~MPd-mD-G~ELL~~Ir 102 (663)
...||+|. |.|..=...+..+|...||+|... .+.++.++.+.+.. +|+|.+-..|.. +. .-++++.|+
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~Lr 680 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDAD--VHAVGVSTLAAGHKTLVPELIKELN 680 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHHHHHHHHHHHHHHH
Confidence 34577776 555666677788888899999743 46788888888765 999998877643 22 344566665
Q ss_pred cc-C-CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 103 LE-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 103 ~~-~-~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+. . +++ |++-+-.-......+.+.|+++|+..--+..+....+...+.++
T Consensus 681 ~~G~~dv~-VivGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 681 SLGRPDIL-VMCGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp HTTCTTSE-EEEEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCE-EEEeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 42 2 443 33443222222344678999999986667777777777666544
No 137
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=69.00 E-value=26 Score=37.78 Aligned_cols=99 Identities=14% Similarity=0.271 Sum_probs=64.5
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEecC-------C----CCCCHH
Q 006044 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH-------M----PDMDGF 95 (663)
Q Consensus 33 giRVLIVD----DD~~~re~L~~lL~~~gy~V~--tasng~eALelLre~k~~pDLVILDI~-------M----PdmDG~ 95 (663)
+..++++| +.....+.++.+-+..+..|. .+.+.++|..+++. ..|.|++-+. - .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 45677775 233445555555444455443 68888888877654 3898888321 0 012345
Q ss_pred HHHHHHhc---cCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 96 KLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 96 ELL~~Ir~---~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+++..+.. ..++|||.--+-.+...+.+++.+||+....
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 66666642 3579999877777889999999999998654
No 138
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=68.13 E-value=29 Score=35.50 Aligned_cols=115 Identities=11% Similarity=0.069 Sum_probs=76.3
Q ss_pred CccEEEEE----eCCHHHHHHHHHH--------HHhC-CCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCC----
Q 006044 32 AGLRVLVV----DDDITCLRILEQM--------LRRC-LYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD---- 91 (663)
Q Consensus 32 ~giRVLIV----DDD~~~re~L~~l--------L~~~-gy~V~t---asng~eALelLre~k~~pDLVILDI~MPd---- 91 (663)
...+|++. |-|..=...+..+ |+.. ||+|.- ....++.++.+++.+ +|+|.+-..|..
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~~--~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVELE--ADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHcC--CCEEEEEeecCCccch
Confidence 35577665 6677777778877 9999 999863 457788888888866 999999998875
Q ss_pred CCHH-HHHHHHhcc---CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 92 MDGF-KLLEHIGLE---MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 92 mDG~-ELL~~Ir~~---~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
+..+ ++++.+++. .+++|++=-+.-+.+ -+.+.||+.|..--....++...+...+.
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~~ 257 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLN 257 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHHH
Confidence 2222 345555432 236655433333333 36678999888777777777665554443
No 139
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=67.30 E-value=37 Score=39.48 Aligned_cols=117 Identities=12% Similarity=0.010 Sum_probs=77.0
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHhc
Q 006044 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIGL 103 (663)
Q Consensus 33 giRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sng~eALelLre~k~~pDLVILDI~MPd-mD-G~ELL~~Ir~ 103 (663)
..||+|. |.|..=...+..+|+..||+|... ...++.++.+.+.. +|+|.+-..|.. +. .-++++.|++
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~~--adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEAD--VHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHTT--CSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHcC--CCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 4577777 555666677788888889999743 46788889888765 999998887653 22 3456666654
Q ss_pred c-C-CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 104 E-M-DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 104 ~-~-~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
. . +++ |++-+-.-......+.+.|++.|+.--.+..++...+...+++
T Consensus 674 ~G~~~i~-VivGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 674 LGRPDIL-ITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp TTCTTSE-EEEEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCE-EEEcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 2 2 443 4444322222334567899999998666777776666655543
No 140
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=67.19 E-value=21 Score=41.19 Aligned_cols=116 Identities=11% Similarity=0.107 Sum_probs=76.2
Q ss_pred ccEEEEE----eCCHHHHHHH----HHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCC----CCHH-H
Q 006044 33 GLRVLVV----DDDITCLRIL----EQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPD----MDGF-K 96 (663)
Q Consensus 33 giRVLIV----DDD~~~re~L----~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPd----mDG~-E 96 (663)
..||++. |-+..=...+ ..+|+..||+|.- ....++.++.+++.. +|+|.+...|.. +..+ +
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Eed--ADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIELK--ADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHTT--CSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEeccccCchhhHHHHHH
Confidence 4688888 4454444322 5678888999863 457889999998876 999999988875 3333 3
Q ss_pred HHHHHhcc-C--CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHh
Q 006044 97 LLEHIGLE-M--DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKR 153 (663)
Q Consensus 97 LL~~Ir~~-~--~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk 153 (663)
+++.+++. . +++|++=-+--..+. +-+.||+.|........++...|...++.+
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 55556532 2 355554333334433 348999999887777777776666555443
No 141
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=66.34 E-value=20 Score=34.44 Aligned_cols=69 Identities=20% Similarity=0.195 Sum_probs=50.0
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPd-------mDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+.+.+++.+.... ..|.|+++-..+. .-|++.++.++...++||++.-+- +.+.+.++++.||+.+..
T Consensus 116 sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~Ga~gv~v 191 (221)
T 1yad_A 116 SVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAGADGIAV 191 (221)
T ss_dssp EECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTTCSEEEE
T ss_pred EcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 66788887666543 3899998764332 236788888865568998887766 778889999999998654
No 142
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=65.44 E-value=77 Score=29.85 Aligned_cols=99 Identities=9% Similarity=-0.011 Sum_probs=58.2
Q ss_pred ccEEEEEeCCH--HHHHHHHHHHHhCCCeEEE----ECCHHHHHHHHHHcCCCceEEEEecCCC----CCCHHHHHHHHh
Q 006044 33 GLRVLVVDDDI--TCLRILEQMLRRCLYNVTT----CSQAAVALDILRERKGCFDVVLSDVHMP----DMDGFKLLEHIG 102 (663)
Q Consensus 33 giRVLIVDDD~--~~re~L~~lL~~~gy~V~t----asng~eALelLre~k~~pDLVILDI~MP----dmDG~ELL~~Ir 102 (663)
|...+++-+.+ ...+.+.+.+++.+..+.. ..+..+.++.+.+.. .|.|.++.... ...+++.+++++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g--~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHT--CCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcC--CCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 34445554443 3334555555655665543 234444445444443 78887763210 113577888887
Q ss_pred cc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 103 LE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 103 ~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.. +++||++-.+- ..+.+.++++.||+..+.
T Consensus 155 ~~~~~~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 155 KVRRKARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp HHCSSCEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred HHcCCCcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 65 47888775555 377788899999998754
No 143
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=64.85 E-value=19 Score=36.27 Aligned_cols=88 Identities=18% Similarity=0.190 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEecC-CC---CCCHHHHHHHHhccCCCcEEEEecCCC
Q 006044 44 TCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH-MP---DMDGFKLLEHIGLEMDLPVIMMSADGR 117 (663)
Q Consensus 44 ~~re~L~~lL~~~gy~V~--tasng~eALelLre~k~~pDLVILDI~-MP---dmDG~ELL~~Ir~~~~IPVIILSa~~d 117 (663)
...+..++++.. +..+. ++.+.+++....+. . .|.|+.=-. .. +..+.++++++++..++|||+..+-.+
T Consensus 114 ~~~~~a~~~~~~-g~~vi~~~~~~~~~a~~~~~~-g--ad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t 189 (264)
T 1xm3_A 114 ETLKASEQLLEE-GFIVLPYTSDDVVLARKLEEL-G--VHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGS 189 (264)
T ss_dssp HHHHHHHHHHHT-TCCEEEEECSCHHHHHHHHHH-T--CSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCS
T ss_pred HHHHHHHHHHCC-CeEEEEEcCCCHHHHHHHHHh-C--CCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCC
Confidence 444555555443 55444 45566665554433 3 576632000 01 123578888888777999999988888
Q ss_pred HHHHHHHHhcCCCeEEeC
Q 006044 118 VSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 118 ~e~v~kAl~~GA~dYLlK 135 (663)
.+.+.++++.||+..++=
T Consensus 190 ~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 190 PKDAAYAMELGADGVLLN 207 (264)
T ss_dssp HHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 899999999999998653
No 144
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=63.40 E-value=36 Score=31.95 Aligned_cols=72 Identities=18% Similarity=0.230 Sum_probs=50.1
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcC-CCceEEEEecCCCCCCHHHHHHHH
Q 006044 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERK-GCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 28 d~fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V-~tasng~eALelLre~k-~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
..+|.+.+|..||-++...+..++.+...+. .| ....+..+.+..+.... ..||+|++|...+ +-.++++.+
T Consensus 78 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 78 RGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 4456567999999999999999999887654 24 36778877776665421 3599999996532 233455555
No 145
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=63.26 E-value=43 Score=33.47 Aligned_cols=69 Identities=12% Similarity=0.058 Sum_probs=51.4
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCCC-------CCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMPD-------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MPd-------mDG~ELL~~Ir~~--~~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
+|.+.+|+.+..+. .+|.|.+.--.|. .-|++.+++++.. .++|||.+.+- +.+.+.+.++.||+++
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 68888888776653 3899988654332 2378889988754 48999999776 5667888999999998
Q ss_pred Ee
Q 006044 133 LI 134 (663)
Q Consensus 133 Ll 134 (663)
..
T Consensus 217 av 218 (243)
T 3o63_A 217 VV 218 (243)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 146
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=62.75 E-value=83 Score=30.15 Aligned_cols=56 Identities=11% Similarity=0.156 Sum_probs=42.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEE
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLS 85 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVIL 85 (663)
|+...+|+++--.+..++.+++++.+...++. ...+.+++++..++....+|+||.
T Consensus 1 m~~~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 1 MSLSLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp -CCCCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCCCCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 34567899999999999999998887655654 456788888887764345898886
No 147
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=62.59 E-value=36 Score=36.06 Aligned_cols=99 Identities=14% Similarity=0.269 Sum_probs=62.4
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEecCC-----------CCCCHH
Q 006044 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM-----------PDMDGF 95 (663)
Q Consensus 33 giRVLIVD----DD~~~re~L~~lL~~~gy~V~--tasng~eALelLre~k~~pDLVILDI~M-----------PdmDG~ 95 (663)
+..++++| +...+.+.++.+-+..+..|. .+.+.++|..+++. ..|.|.+-+.- .+...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 44566664 334455566665555455443 67888888776653 37988873210 012335
Q ss_pred HHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 96 KLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 96 ELL~~Ir---~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+++..+. ...++|||.--+-.+.+.+.+++.+||+....
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 5555553 23479999877777888999999999998754
No 148
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=62.25 E-value=14 Score=37.72 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=40.9
Q ss_pred HHHHHHHhcc-CCCcEEEEecCCC------HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 95 FKLLEHIGLE-MDLPVIMMSADGR------VSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 95 ~ELL~~Ir~~-~~IPVIILSa~~d------~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
+++++++|.. .++|+++|+-++. ...+.++.++|+++.+.-.+..++....++.+
T Consensus 83 ~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 83 FDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp HHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHH
Confidence 6777778765 7899999874332 55678889999999999777777765555443
No 149
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=60.52 E-value=34 Score=28.31 Aligned_cols=45 Identities=16% Similarity=0.275 Sum_probs=35.3
Q ss_pred cccccHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHHHHH
Q 006044 222 RVVWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASHLQK 270 (663)
Q Consensus 222 RVvWTvELHrkFv~AVnqLGidKAvP---KkILElMnVpgLTrenVASHLQK 270 (663)
+-.||.|=...|.+|+.++|.+ .| .+|.++ |||-|..++..|-+.
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~--vpGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG--SSDCWDKIARC--VPSKSKEDCIARYKL 65 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGG--CSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHH--cCCCCHHHHHHHHHH
Confidence 4469999999999999999854 45 345555 789999999888443
No 150
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=58.74 E-value=24 Score=28.62 Aligned_cols=46 Identities=22% Similarity=0.348 Sum_probs=37.2
Q ss_pred CcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHH
Q 006044 221 PRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKF 271 (663)
Q Consensus 221 pRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHLQKy 271 (663)
.+-.||.|=+..|++++..+|-.= +.|..+ +|+-|..+|..|-++|
T Consensus 8 ~~~~WT~eEd~~l~~~~~~~G~~W---~~Ia~~--~~~Rt~~q~k~r~~~~ 53 (72)
T 2cu7_A 8 YSVKWTIEEKELFEQGLAKFGRRW---TKISKL--IGSRTVLQVKSYARQY 53 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHTCSCH---HHHHHH--HSSSCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCH---HHHHHH--cCCCCHHHHHHHHHHH
Confidence 345799999999999999999632 467776 6889999999986554
No 151
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=58.35 E-value=61 Score=31.40 Aligned_cols=78 Identities=19% Similarity=0.232 Sum_probs=53.4
Q ss_pred HHHHHHHHHcCCCce-EEEEecCCCCC-CH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe------CC
Q 006044 67 AVALDILRERKGCFD-VVLSDVHMPDM-DG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------KP 136 (663)
Q Consensus 67 ~eALelLre~k~~pD-LVILDI~MPdm-DG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl------KP 136 (663)
.+.++.+.+.. ++ ++++++.-.++ .| ++++++++...++|||...+-.+.+.+.++++.||++.+. .|
T Consensus 155 ~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVELG--AGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHHT--CCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHcC--CCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 44445554443 56 55666542221 23 8899999877789999988888888888999999998765 35
Q ss_pred CCHHHHHHHH
Q 006044 137 IREEELKNIW 146 (663)
Q Consensus 137 ~s~eeLk~~I 146 (663)
++..++++.+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 5666665543
No 152
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=56.89 E-value=2.6 Score=43.03 Aligned_cols=51 Identities=20% Similarity=0.168 Sum_probs=34.8
Q ss_pred CccEEEEEeCC--HHHHHHHHHHHHhCCCeEEEECCHHH--HHHHHHHcCCCceEEEEe
Q 006044 32 AGLRVLVVDDD--ITCLRILEQMLRRCLYNVTTCSQAAV--ALDILRERKGCFDVVLSD 86 (663)
Q Consensus 32 ~giRVLIVDDD--~~~re~L~~lL~~~gy~V~tasng~e--ALelLre~k~~pDLVILD 86 (663)
++.|||||+++ +.....+.+.|+..+|.|.......- -.+.|. .||+||++
T Consensus 3 ~m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 3 AMTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp ---CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred CCceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 34689999988 66788899999999999876553221 112332 28999887
No 153
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=56.15 E-value=43 Score=31.36 Aligned_cols=73 Identities=14% Similarity=0.088 Sum_probs=49.1
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHcC--CCceEEEEecCCCCCCHHHHHHHH
Q 006044 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 27 ~d~fP~giRVLIVDDD~~~re~L~~lL~~~gy~--V-~tasng~eALelLre~k--~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
...+|.+.+|..||-++...+..++.+...+.. | ....+..+.+..+.... ..||+|++|... .+-.++++.+
T Consensus 83 a~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~~--~~~~~~l~~~ 160 (225)
T 3tr6_A 83 GLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDADK--ANTDLYYEES 160 (225)
T ss_dssp HTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSCG--GGHHHHHHHH
T ss_pred HHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCCH--HHHHHHHHHH
Confidence 344566779999999999999999999876542 4 35667777766554210 349999988742 2233445544
No 154
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=55.25 E-value=19 Score=30.17 Aligned_cols=44 Identities=16% Similarity=0.233 Sum_probs=35.5
Q ss_pred CcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHH
Q 006044 221 PRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQ 269 (663)
Q Consensus 221 pRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHLQ 269 (663)
.+-.||.|=+..|+++|.+.| .+= ++|.++ |++-|..++..|-+
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~W--~~IA~~--v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DDW--NKVSEH--VGSRTQDECILHFL 60 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SCH--HHHHHH--HSSCCHHHHHHHHT
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CCH--HHHHHH--cCCCCHHHHHHHHH
Confidence 355799999999999999999 432 578887 46789999988843
No 155
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.83 E-value=19 Score=33.15 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=33.0
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC--CCeEEEECCHHHHHHHHHHcCCCceEEEEecC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC--LYNVTTCSQAAVALDILRERKGCFDVVLSDVH 88 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~--gy~V~tasng~eALelLre~k~~pDLVILDI~ 88 (663)
.|.||++||-|+. ..+..++... ++.+..+.. ....+.+......||+||+|.-
T Consensus 29 ~g~~vlliD~D~~--~~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~~ 84 (206)
T 4dzz_A 29 SGYNIAVVDTDPQ--MSLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDGA 84 (206)
T ss_dssp TTCCEEEEECCTT--CHHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEECC
T ss_pred CCCeEEEEECCCC--CCHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEECC
Confidence 4679999998864 2344444332 456665544 3344444444445999999973
No 156
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=54.79 E-value=79 Score=30.85 Aligned_cols=94 Identities=12% Similarity=0.188 Sum_probs=58.1
Q ss_pred HHHHHHcCCC-----CCCccccccccCCCCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc
Q 006044 5 QRIVQSSGGS-----GYGSSRAADVAVPDQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER 76 (663)
Q Consensus 5 ~~~v~~mGGs-----g~gs~~~~dl~~~d~fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasng~eALelLre~ 76 (663)
..++...++. |+|..+.. +.+...+|.+.+|..||-++...+..++.+...+. .|. ...++.+.+..+...
T Consensus 72 ~~l~~~~~~~~VLeiG~G~G~~~-~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~ 150 (247)
T 1sui_A 72 SMLLKLINAKNTMEIGVYTGYSL-LATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKD 150 (247)
T ss_dssp HHHHHHTTCCEEEEECCGGGHHH-HHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHS
T ss_pred HHHHHhhCcCEEEEeCCCcCHHH-HHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhc
Confidence 3445555553 55544421 11122345567999999999999999999887765 343 567777776655321
Q ss_pred ---CCCceEEEEecCCCCCCHHHHHHHH
Q 006044 77 ---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 77 ---k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
...||+|++|... .+-..+++.+
T Consensus 151 ~~~~~~fD~V~~d~~~--~~~~~~l~~~ 176 (247)
T 1sui_A 151 EKNHGSYDFIFVDADK--DNYLNYHKRL 176 (247)
T ss_dssp GGGTTCBSEEEECSCS--TTHHHHHHHH
T ss_pred cCCCCCEEEEEEcCch--HHHHHHHHHH
Confidence 2359999999653 2344555555
No 157
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=54.14 E-value=45 Score=33.57 Aligned_cols=107 Identities=14% Similarity=0.129 Sum_probs=62.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~--tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
.++++|+.+.+. +.+++++....-.|. ..-+..+..+.+.. .|++|+--.-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 356666655544 444444433211222 22233444555543 47777642212333556666663 356777
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.. +.....+.+..|..+++.+|-+.++|.+++..++.
T Consensus 312 ~~----~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 348 (406)
T 2gek_A 312 AS----DLDAFRRVLADGDAGRLVPVDDADGMAAALIGILE 348 (406)
T ss_dssp EC----CCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHH
T ss_pred Ee----cCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHc
Confidence 53 22445677888889999999999999999998875
No 158
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=53.52 E-value=87 Score=34.56 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=64.8
Q ss_pred CccEEEEEeC----CHHHHHHHHHHHHhCC-CeE--EEECCHHHHHHHHHHcCCCceEEEEecCCCC-----------CC
Q 006044 32 AGLRVLVVDD----DITCLRILEQMLRRCL-YNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD-----------MD 93 (663)
Q Consensus 32 ~giRVLIVDD----D~~~re~L~~lL~~~g-y~V--~tasng~eALelLre~k~~pDLVILDI~MPd-----------mD 93 (663)
.+..++++|. .....+.++.+-+... ..| ..+.+.++|..+++.- .|.|+..+.-.. ..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aG---ad~i~vg~g~gsi~~~~~~~g~g~p 343 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAG---ANVVKVGIGPGSICTTRVVAGVGVP 343 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSTTCCHHHHHCCCCC
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhC---CCEEEECCCCccccccccccCCCCC
Confidence 3567888873 3445555555555543 233 3677888887776643 788886432111 22
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 94 G~ELL~~Ir---~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.++++..+. ...++|||.--+-.+...+.+|+.+||+..+.
T Consensus 344 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~v 387 (511)
T 3usb_A 344 QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVML 387 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhhee
Confidence 345554442 33479999888888899999999999998765
No 159
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=53.44 E-value=40 Score=26.34 Aligned_cols=45 Identities=20% Similarity=0.306 Sum_probs=35.2
Q ss_pred cccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHH
Q 006044 222 RVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQK 270 (663)
Q Consensus 222 RVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHLQK 270 (663)
+-.||.|-.+.++++|.+.|..+= ++|.+.| ++-|..++..|-++
T Consensus 8 ~~~WT~eED~~L~~~v~~~G~~~W--~~Ia~~~--~~Rt~~qcr~r~~~ 52 (60)
T 1x41_A 8 DPSWTAQEEMALLEAVMDCGFGNW--QDVANQM--CTKTKEECEKHYMK 52 (60)
T ss_dssp CSSSCHHHHHHHHHHHHHTCTTCH--HHHHHHH--TTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCcH--HHHHHHh--CCCCHHHHHHHHHH
Confidence 346999999999999999996542 4677774 78888888877443
No 160
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=53.29 E-value=34 Score=34.34 Aligned_cols=105 Identities=12% Similarity=0.200 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHhCCCeEEE-----ECCHHHHHHHHHHcCCCceEEEE---------ecCCC---------CCCH------
Q 006044 44 TCLRILEQMLRRCLYNVTT-----CSQAAVALDILRERKGCFDVVLS---------DVHMP---------DMDG------ 94 (663)
Q Consensus 44 ~~re~L~~lL~~~gy~V~t-----asng~eALelLre~k~~pDLVIL---------DI~MP---------dmDG------ 94 (663)
...+.++.+-+..+..|.. +.+..+..+.+.+.. .|.|++ +..-. +..|
T Consensus 151 ~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~G--~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~ 228 (311)
T 1ep3_A 151 VAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAAG--ADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPV 228 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHTT--CSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHcC--CCEEEEeCCCcccccCcccCCccccCCCCcccCccchHH
Confidence 3455555554444554432 234456556666543 888777 33211 0112
Q ss_pred -HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE------eCCCCHHHHHHHHHHHH
Q 006044 95 -FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL------IKPIREEELKNIWQHVV 150 (663)
Q Consensus 95 -~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL------lKP~s~eeLk~~Iq~VL 150 (663)
++++++++...++|||..-+-.+.+.+.+++..||+... ..|.-..++++-++..+
T Consensus 229 ~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~ 291 (311)
T 1ep3_A 229 ALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELM 291 (311)
T ss_dssp HHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHH
Confidence 477888876668999987777788999999999988653 33444444444444433
No 161
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=53.04 E-value=53 Score=32.17 Aligned_cols=68 Identities=13% Similarity=0.183 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcCCCceEEE-EecCCCC-CC--HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 66 AAVALDILRERKGCFDVVL-SDVHMPD-MD--GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 66 g~eALelLre~k~~pDLVI-LDI~MPd-mD--G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
..+..+.+.+.. .+.|+ .++.-.+ .. .++++++++...++|||...+-.+.+.+.++++.||++.+.=
T Consensus 158 ~~e~~~~~~~~G--~~~i~~t~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTTCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHcC--CCEEEEEeecCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 445545555443 56544 4543211 11 278999998777999999998888889999999999987653
No 162
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=52.80 E-value=19 Score=35.81 Aligned_cols=54 Identities=13% Similarity=0.320 Sum_probs=36.5
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHH---HHHHHHhcCCCeEEeCCCCHHHHHHHHHH
Q 006044 94 GFKLLEHIGLEMDLPVIMMSADGRVS---AVMRGIRHGACDYLIKPIREEELKNIWQH 148 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~~d~e---~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~ 148 (663)
+++++++++...++|++++.- .+.. .+..+.+.||++++.-....+++...+..
T Consensus 82 ~~~~i~~ir~~~~~Pv~~m~~-~~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~ 138 (262)
T 1rd5_A 82 VLEMLREVTPELSCPVVLLSY-YKPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSE 138 (262)
T ss_dssp HHHHHHHHGGGCSSCEEEECC-SHHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEec-CcHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHH
Confidence 567788888778899988752 2221 12348899999999865665666555544
No 163
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=52.58 E-value=53 Score=31.48 Aligned_cols=72 Identities=18% Similarity=0.229 Sum_probs=47.9
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcC--CCceEEEEecCCCCCCHHHHHHHH
Q 006044 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 28 d~fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasng~eALelLre~k--~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
..+|.+.+|..+|-++...+..++.+...+. .|. ...+..+.+..+.... ..||+|++|... .+-.++++.+
T Consensus 92 ~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 168 (232)
T 3cbg_A 92 LQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDADK--RNYPRYYEIG 168 (232)
T ss_dssp TTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSCG--GGHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCCH--HHHHHHHHHH
Confidence 3455567999999999999999888876554 243 5677777666554321 359999999642 2233445554
No 164
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=52.52 E-value=35 Score=30.09 Aligned_cols=39 Identities=28% Similarity=0.376 Sum_probs=25.8
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH
Q 006044 37 LVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRE 75 (663)
Q Consensus 37 LIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre 75 (663)
|+-|.|..-++.+++-++..||+|..+++.++|+..+++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 333555555566666666667777777777777777765
No 165
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=52.47 E-value=1.3e+02 Score=30.80 Aligned_cols=79 Identities=23% Similarity=0.246 Sum_probs=55.0
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCC-------CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHH
Q 006044 53 LRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-------DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRG 124 (663)
Q Consensus 53 L~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MP-------dmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kA 124 (663)
++..+..|. .+.+.+++...... ..|.|+++=.-+ +...++++++++...++|||+-.+-.+.+.+.++
T Consensus 114 l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~a 190 (328)
T 2gjl_A 114 FRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVAA 190 (328)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHHH
T ss_pred HHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHH
Confidence 333344443 46777777665543 379888853211 1256788888877678999988887788889999
Q ss_pred HhcCCCeEEe
Q 006044 125 IRHGACDYLI 134 (663)
Q Consensus 125 l~~GA~dYLl 134 (663)
+..||+....
T Consensus 191 l~~GAdgV~v 200 (328)
T 2gjl_A 191 LALGADAINM 200 (328)
T ss_dssp HHHTCSEEEE
T ss_pred HHcCCCEEEE
Confidence 9999998654
No 166
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=52.09 E-value=98 Score=31.08 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=63.9
Q ss_pred HHHHHHhCCCeEE--EEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc--cCCCcEEEEecCCCHHHHHH
Q 006044 49 LEQMLRRCLYNVT--TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL--EMDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 49 L~~lL~~~gy~V~--tas-ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~--~~~IPVIILSa~~d~e~v~k 123 (663)
+++.|......+. ... +..+.++.+.... +|.||+|+.=.-.+--++...++. ....++++=....+...+..
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~g--~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEAG--LDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHTT--CSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcCC--cCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 5556655433333 233 4466667766554 999999998766665555555542 23456666555567778889
Q ss_pred HHhcCCCeEEe-CCCCHHHHHHHHHHH
Q 006044 124 GIRHGACDYLI-KPIREEELKNIWQHV 149 (663)
Q Consensus 124 Al~~GA~dYLl-KP~s~eeLk~~Iq~V 149 (663)
+++.|++..++ |--+.++++.+++.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999987544 445788888777654
No 167
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=51.08 E-value=86 Score=32.33 Aligned_cols=79 Identities=16% Similarity=0.211 Sum_probs=55.8
Q ss_pred HHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCC-----CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHh
Q 006044 53 LRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP-----DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIR 126 (663)
Q Consensus 53 L~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MP-----dmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~ 126 (663)
++..+..|. .+.+.++|..+.+. ..|.|+++=.-. ....++++..++...++|||+-.+-.+.+.+.+++.
T Consensus 120 l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al~ 196 (326)
T 3bo9_A 120 LKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFA 196 (326)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 334454443 56777777665543 378888864211 235678888887666899998888888999999999
Q ss_pred cCCCeEEe
Q 006044 127 HGACDYLI 134 (663)
Q Consensus 127 ~GA~dYLl 134 (663)
.||+....
T Consensus 197 ~GA~gV~v 204 (326)
T 3bo9_A 197 LGAEAVQM 204 (326)
T ss_dssp HTCSEEEE
T ss_pred hCCCEEEe
Confidence 99998765
No 168
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=51.04 E-value=50 Score=31.93 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=47.8
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc---CCCceEEEEecCCCCCCHHHHHHHH
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER---KGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasng~eALelLre~---k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
+|.+-+|..||-++...+..++.+...++ .|. ...++.+.+..+... ...||+|++|..-+ +-.++++.+
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~~~--~~~~~l~~~ 167 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDADKP--NYIKYHERL 167 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSCGG--GHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCchH--HHHHHHHHH
Confidence 45556999999999999999999987765 243 567777776655321 23599999995422 233444444
No 169
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=50.89 E-value=67 Score=31.12 Aligned_cols=68 Identities=12% Similarity=0.143 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCCCCC---HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFD-VVLSDVHMPDMD---GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pD-LVILDI~MPdmD---G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+..+.+.+.. .| |.+.|....... -+++++++++..++|||+...-.+.+.+.++++.||+..++
T Consensus 32 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~l 103 (252)
T 1ka9_F 32 DPVEAARAYDEAG--ADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSV 103 (252)
T ss_dssp CHHHHHHHHHHHT--CSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHcC--CCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 4455555555443 45 456676543322 24567778777789999998888999999999999988766
No 170
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=50.71 E-value=17 Score=36.93 Aligned_cols=85 Identities=13% Similarity=0.101 Sum_probs=54.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCC--CC--------------------HHHHHHHHhccCCCcEEEEecCC------
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPD--MD--------------------GFKLLEHIGLEMDLPVIMMSADG------ 116 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPd--mD--------------------G~ELL~~Ir~~~~IPVIILSa~~------ 116 (663)
+.+..++.++......|+|.+++-..| .| .+++++++|...++|||+|+-.+
T Consensus 28 ~~~~~~~~~~~l~~~aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~g 107 (271)
T 1ujp_A 28 SREGFLQAVEEVLPYADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAWG 107 (271)
T ss_dssp CHHHHHHHHHHHGGGCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHHC
T ss_pred ChHHHHHHHHHHHhcCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHhh
Confidence 444555554432112788888864432 22 35778888766889999985222
Q ss_pred CHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHH
Q 006044 117 RVSAVMRGIRHGACDYLIKPIREEELKNIWQHV 149 (663)
Q Consensus 117 d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~V 149 (663)
-...+.++.++|+++++.-.+..+++...++.+
T Consensus 108 ~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 108 PERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp HHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 234566788999999999777777766555444
No 171
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=50.51 E-value=64 Score=30.71 Aligned_cols=86 Identities=14% Similarity=0.144 Sum_probs=55.4
Q ss_pred HHHHHHHHHhC-CCeE-EEECCHHHHHHHHHHcCCCceEEEEecC-----CCC----CCHHHHHHHHhccCCCcEEEEec
Q 006044 46 LRILEQMLRRC-LYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-----MPD----MDGFKLLEHIGLEMDLPVIMMSA 114 (663)
Q Consensus 46 re~L~~lL~~~-gy~V-~tasng~eALelLre~k~~pDLVILDI~-----MPd----mDG~ELL~~Ir~~~~IPVIILSa 114 (663)
.+.++.+-+.+ +..+ ..+.+.+++.++... ..|+|.+-.. ..+ ..+++++++++...++|||...+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecC
Confidence 33444433332 4443 466777787765432 2788754321 011 12456788887656899998888
Q ss_pred CCCHHHHHHHHhcCCCeEEe
Q 006044 115 DGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 115 ~~d~e~v~kAl~~GA~dYLl 134 (663)
-.+.+.+.++++.||+.++.
T Consensus 184 I~~~~~~~~~~~~Gad~v~v 203 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVV 203 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHHcCCCEEEE
Confidence 77899999999999998766
No 172
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=50.42 E-value=17 Score=37.18 Aligned_cols=55 Identities=18% Similarity=0.218 Sum_probs=40.4
Q ss_pred HHHHHHHHhcc-CCCcEEEEecC------CCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHH
Q 006044 94 GFKLLEHIGLE-MDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQH 148 (663)
Q Consensus 94 G~ELL~~Ir~~-~~IPVIILSa~------~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~ 148 (663)
.+++++++|.. .++|+|+|+-+ .-...+.++.++|+++.|.--+..++.....+.
T Consensus 84 ~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~ 145 (271)
T 3nav_A 84 CFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAA 145 (271)
T ss_dssp HHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHH
T ss_pred HHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHH
Confidence 46777888765 78999999732 335568888999999999977777775544433
No 173
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=50.41 E-value=2.9 Score=44.35 Aligned_cols=44 Identities=7% Similarity=-0.023 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEec
Q 006044 44 TCLRILEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 44 ~~re~L~~lL~~~gy~V~t--asng~eALelLre~k~~pDLVILDI 87 (663)
.+.+.++.+-++.+.+|.. ..+..+.+.........|||++++.
T Consensus 19 ~~~~~~~~F~~~~gi~V~~~~~~~~~~kl~~~~~sg~~pDv~~~~~ 64 (449)
T 3iot_A 19 GLAEVGKKFEKDTGIKVTVEHPDKLEEKFPQVAATGDGPDIIFWAH 64 (449)
T ss_dssp HHHHHHHHHHHHHSCCEEEECCTTHHHHHHHHGGGTCSCSEEEEET
T ss_pred HHHHHHHHHhhccCCEEEEEecHHHHHHHHHHhhCCCCCCEEEeCc
Confidence 3444444444443555543 3444555554444445689998764
No 174
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=50.33 E-value=1.3e+02 Score=30.28 Aligned_cols=108 Identities=13% Similarity=0.087 Sum_probs=70.5
Q ss_pred CccEEEEEeCC-HHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 32 AGLRVLVVDDD-ITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD-~~~re~L~~lL~~~gy~V~tas--ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
..++++|+-+. ....+.++++....+-.+.... +.++..+.+.. .|++++-... +.-|..+++.+. ..+|
T Consensus 284 ~~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~----adv~v~ps~~-e~~~~~~~EAma--~G~P 356 (439)
T 3fro_A 284 QEMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAI 356 (439)
T ss_dssp GGEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHTT----CSEEEECBSC-CSSCHHHHHHHH--TTCE
T ss_pred CCeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHHH----CCEEEeCCCC-CCccHHHHHHHH--CCCC
Confidence 35677777654 4455777777777663333333 45555555542 5888775543 445666777763 4678
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
||.- .. ....+.++.| .+++..|-+.++|.+++..++.
T Consensus 357 vi~s-~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 357 PIAS-AV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEEE-SS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred eEEc-CC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 7763 22 2344556667 8999999999999999998876
No 175
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=50.27 E-value=64 Score=30.21 Aligned_cols=72 Identities=22% Similarity=0.226 Sum_probs=48.3
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcC--CCceEEEEecCCCCCCHHHHHHHH
Q 006044 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERK--GCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 28 d~fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasng~eALelLre~k--~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
..++.+.+|..+|-++...+..++.+...+. .+. ...+..+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 89 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 89 LALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 3455567999999999999999998887653 343 5667777666554321 24999999864 22334455554
No 176
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=49.87 E-value=1.2e+02 Score=31.83 Aligned_cols=101 Identities=9% Similarity=0.102 Sum_probs=63.8
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEecCCCC------------CC
Q 006044 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (663)
Q Consensus 33 giRVLIVD----DD~~~re~L~~lL~~~-gy~V--~tasng~eALelLre~k~~pDLVILDI~MPd------------mD 93 (663)
+..++.++ +.....+.++.+-+.. +..| ..+.+.++|..+++. ..|.|++... ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45566665 3344555665554544 4433 467888888877654 3798876432 21 12
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCCeE-EeCCC
Q 006044 94 GFKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDY-LIKPI 137 (663)
Q Consensus 94 G~ELL~~Ir---~~~~IPVIILSa~~d~e~v~kAl~~GA~dY-LlKP~ 137 (663)
-+.++..+. ...++|||.-.+-.+...+.+|+.+||+.. +-++|
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 234444442 224799998888888999999999999975 55665
No 177
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=49.47 E-value=48 Score=31.57 Aligned_cols=69 Identities=14% Similarity=0.143 Sum_probs=45.7
Q ss_pred EECCHHHHHHHHHHcCCCceEEEEecCCC--------CCCHHHHHHHHhccCC-CcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 62 TCSQAAVALDILRERKGCFDVVLSDVHMP--------DMDGFKLLEHIGLEMD-LPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 62 tasng~eALelLre~k~~pDLVILDI~MP--------dmDG~ELL~~Ir~~~~-IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
.+.+..++..... .. +|.|++..-.| ..-|++.+++++...+ +||++.-+-. .+.+.++++.||+.+
T Consensus 122 s~~t~~e~~~a~~-~g--~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEE-DG--ADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHH-HT--CSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHh-CC--CCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 3577777655443 33 89988632111 1236888888875555 8988876655 666777888999887
Q ss_pred Ee
Q 006044 133 LI 134 (663)
Q Consensus 133 Ll 134 (663)
..
T Consensus 198 ~v 199 (227)
T 2tps_A 198 SM 199 (227)
T ss_dssp EE
T ss_pred EE
Confidence 54
No 178
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=49.39 E-value=25 Score=34.31 Aligned_cols=84 Identities=12% Similarity=0.102 Sum_probs=50.2
Q ss_pred HHHHHHHhCCCeEEE-E--CCHHHHHHHHHHcCCCce-EEEEecCCCCCC---------HHHHHHHHhccCCCcEEEEec
Q 006044 48 ILEQMLRRCLYNVTT-C--SQAAVALDILRERKGCFD-VVLSDVHMPDMD---------GFKLLEHIGLEMDLPVIMMSA 114 (663)
Q Consensus 48 ~L~~lL~~~gy~V~t-a--sng~eALelLre~k~~pD-LVILDI~MPdmD---------G~ELL~~Ir~~~~IPVIILSa 114 (663)
.+.+.+++.+..+.. + .+..+.++.+... .| +|.+ +..++.. +++.+++++...++||++-.+
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GG 199 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFG 199 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEee
Confidence 334444444544332 2 2445666666544 34 5533 3334432 356777777656799888777
Q ss_pred CCCHHHHHHHHhcCCCeEEeC
Q 006044 115 DGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 115 ~~d~e~v~kAl~~GA~dYLlK 135 (663)
-...+.+.+.++.||+.++.=
T Consensus 200 I~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 200 VSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCHHHHHHHHHcCCCEEEEc
Confidence 777688888889999998863
No 179
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=48.94 E-value=2.2e+02 Score=30.20 Aligned_cols=97 Identities=10% Similarity=0.058 Sum_probs=59.2
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEecCCCC------------CC
Q 006044 33 GLRVLVVDD----DITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (663)
Q Consensus 33 giRVLIVDD----D~~~re~L~~lL~~~-gy~V~--tasng~eALelLre~k~~pDLVILDI~MPd------------mD 93 (663)
+..++.+|- .....+.++.+-+.. +..|. .+.+.++|..+++. ..|.|.+.++ |+ ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 566777762 233333444333322 34443 47888888877654 3799888543 22 12
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
-++.+..+..... |||.--+-.+...+.+++.+||+...+
T Consensus 188 ~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 188 MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3444444432222 888877777889999999999987654
No 180
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=48.39 E-value=1.1e+02 Score=33.44 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=64.3
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEecCCCC------------CC
Q 006044 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (663)
Q Consensus 33 giRVLIVD----DD~~~re~L~~lL~~~-gy~V--~tasng~eALelLre~k~~pDLVILDI~MPd------------mD 93 (663)
+..++++| +.....+.++.+-+.. +..| ..+.+.++|..++.. ..|.|.+-+. |+ ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 45677776 4455556666666654 3333 247788888776653 3798887321 11 22
Q ss_pred HHHHHHHHhc---cCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 94 GFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 94 G~ELL~~Ir~---~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.++++..+.. ..++|||.--+-.+...+.+++.+||+...+
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~v 360 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMM 360 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeee
Confidence 4555555532 3479999888888899999999999988655
No 181
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=48.30 E-value=78 Score=30.13 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=47.8
Q ss_pred CCHHHHHHHHHHcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 64 SQAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 64 sng~eALelLre~k~~pD-LVILDI~MPdm---DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+..+.++.+.+.. .| |.+.|...... ..++++++++...++|+++-..-.+.+.+.++++.||+...+
T Consensus 33 ~~~~~~a~~~~~~G--~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 33 GDPVEMAVRYEEEG--ADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp ECHHHHHHHHHHTT--CSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred ccHHHHHHHHHHcC--CCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 35566666666543 67 55666543222 246777888766789999877777888889999999887664
No 182
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=48.06 E-value=49 Score=28.64 Aligned_cols=51 Identities=25% Similarity=0.378 Sum_probs=41.0
Q ss_pred cccHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHHHHHHHHHHHHh
Q 006044 224 VWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASHLQKFRLYLKRL 278 (663)
Q Consensus 224 vWTvELHrkFv~AVnqLGidKAvP---KkILElMnVpgLTrenVASHLQKyRl~LKrl 278 (663)
.||.|=.+.|.+|+.+++.+ .| .+|.+. +||-|.++|..|-+.+...++.+
T Consensus 10 ~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~--vpGRT~~q~k~ry~~l~~dv~~i 63 (93)
T 2cjj_A 10 PWSAKENKAFERALAVYDKD--TPDRWANVARA--VEGRTPEEVKKHYEILVEDIKYI 63 (93)
T ss_dssp SCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHH--STTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCC--CCchHHHHHHH--cCCCCHHHHHHHHHHHHHHHHHh
Confidence 69999999999999999754 33 467776 78999999999977766655554
No 183
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=48.04 E-value=1e+02 Score=29.36 Aligned_cols=79 Identities=18% Similarity=0.230 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHcCCCceEEE-EecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe------
Q 006044 65 QAAVALDILRERKGCFDVVL-SDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI------ 134 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVI-LDI~MPdm---DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl------ 134 (663)
+..+.++.+.+.. .|.|+ .++.-.+. -.++.+++++...++|||+-.+-...+.+.++++.||+..+.
T Consensus 155 ~~~e~~~~~~~~G--~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 155 DAVKWAKEVEELG--AGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHhCC--CCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 3445555555543 67664 55543211 146788888766689999888777778888999999998764
Q ss_pred CCCCHHHHHHH
Q 006044 135 KPIREEELKNI 145 (663)
Q Consensus 135 KP~s~eeLk~~ 145 (663)
.+...+++.+.
T Consensus 233 ~~~~~~~~~~~ 243 (253)
T 1h5y_A 233 RVLSIAQVKRY 243 (253)
T ss_dssp TSSCHHHHHHH
T ss_pred CCCCHHHHHHH
Confidence 34455544443
No 184
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=48.01 E-value=1.2e+02 Score=31.50 Aligned_cols=76 Identities=16% Similarity=0.114 Sum_probs=53.4
Q ss_pred CCCeE-EEECCHHHHHHHHHHcCCCceEEEEecC---------CCC-------CCHHHHHHHHhccCCCcEEEEecCCCH
Q 006044 56 CLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH---------MPD-------MDGFKLLEHIGLEMDLPVIMMSADGRV 118 (663)
Q Consensus 56 ~gy~V-~tasng~eALelLre~k~~pDLVILDI~---------MPd-------mDG~ELL~~Ir~~~~IPVIILSa~~d~ 118 (663)
.+..| ..+.+.+++....+. ..|.|+++-. .++ .+.++++++++...++|||+.-+-.+.
T Consensus 144 ~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~ 220 (369)
T 3bw2_A 144 AGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRG 220 (369)
T ss_dssp TTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSH
T ss_pred CCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCH
Confidence 34444 357777777655442 3899988531 110 234888999876678999988777788
Q ss_pred HHHHHHHhcCCCeEEe
Q 006044 119 SAVMRGIRHGACDYLI 134 (663)
Q Consensus 119 e~v~kAl~~GA~dYLl 134 (663)
+.+.+++..||+....
T Consensus 221 ~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 221 GQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999987654
No 185
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=47.77 E-value=1.3e+02 Score=32.95 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEecC--------------CCCCCHHHHHHHHhccCC
Q 006044 44 TCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVH--------------MPDMDGFKLLEHIGLEMD 106 (663)
Q Consensus 44 ~~re~L~~lL~~~-gy~V~--tasng~eALelLre~k~~pDLVILDI~--------------MPdmDG~ELL~~Ir~~~~ 106 (663)
...+.++.+-+.. +..|. .+.+.++|..+.+.- .|.|.+-.+ +|....+.++.+++...+
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~aG---ad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ 358 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDAG---VDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFG 358 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHT---CSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGT
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHcC---CCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCC
Confidence 3445555555554 44443 477777777666542 787777332 112234566777766668
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeE-EeCCC
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDY-LIKPI 137 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dY-LlKP~ 137 (663)
+|||.--+-.+...+.+++.+||+.. +-.++
T Consensus 359 ipVia~GGI~~~~di~kala~GAd~V~iG~~~ 390 (514)
T 1jcn_A 359 VPIIADGGIQTVGHVVKALALGASTVMMGSLL 390 (514)
T ss_dssp CCEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCeeeECHHH
Confidence 99998888888899999999999875 44454
No 186
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=47.11 E-value=86 Score=30.37 Aligned_cols=72 Identities=22% Similarity=0.314 Sum_probs=48.3
Q ss_pred CCCCCCccEEEEEeCCHHHHHHHHHHHHhCCCe--EE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006044 27 PDQFPAGLRVLVVDDDITCLRILEQMLRRCLYN--VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 27 ~d~fP~giRVLIVDDD~~~re~L~~lL~~~gy~--V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
...+|.+.+|..||-++...+..++.+...+.. |. ...+..+.+..+.. ...||+|++|...+ +-..+++.+
T Consensus 82 a~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 82 ARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp HTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGG--GHHHHHHHH
T ss_pred HHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchH--HHHHHHHHH
Confidence 345565679999999999999999999876542 43 56676665544321 12599999987432 334455555
No 187
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=46.92 E-value=59 Score=31.84 Aligned_cols=69 Identities=13% Similarity=0.183 Sum_probs=48.6
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 65 ng~eALelLre~k~~pD-LVILDI~MPdm---DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
+..+..+.+.+.. .| |.+.|....+. .-++++++++...++|+|+...-.+.+.+.++++.||+..++=
T Consensus 31 ~~~~~a~~~~~~G--a~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg 103 (266)
T 2w6r_A 31 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAA 103 (266)
T ss_dssp EHHHHHHHHHHHT--CSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECC
T ss_pred CHHHHHHHHHHCC--CCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhh
Confidence 4555555555543 55 55567654321 1278899998778999999877777888899999999987764
No 188
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=46.63 E-value=3.4 Score=45.53 Aligned_cols=100 Identities=10% Similarity=-0.099 Sum_probs=55.9
Q ss_pred ChhHHHHHHHcCCC--------CCCc-cccccccCCC----------------CCCCccEEEEE--eCCHHHHHHHHHHH
Q 006044 1 MAALQRIVQSSGGS--------GYGS-SRAADVAVPD----------------QFPAGLRVLVV--DDDITCLRILEQML 53 (663)
Q Consensus 1 lai~~~~v~~mGGs--------g~gs-~~~~dl~~~d----------------~fP~giRVLIV--DDD~~~re~L~~lL 53 (663)
|++++++++.|||. +.|+ .+.+.++++. ..+.|.+|.|. ++.......+..+|
T Consensus 113 L~iv~~l~~~~gG~~i~v~S~~~~g~~~~~~~Lpl~~~~~~g~~~~~~~~~~~~~~~GT~V~v~l~~~~~e~~~~I~~~l 192 (471)
T 1mu5_A 113 VKAAVLYSQMHQDKPIEIETSPVNSKRIYTFKLKIDINKNEPIIVERGSVENTRGFHGTSVAISIPGDWPKAKSRIYEYI 192 (471)
T ss_dssp HHHHHHHHHHHCCCCEEEEEECTTCSEEEEEEEEECTTTCCEEEEEEEEEECCTTCCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceeEEEecCCCceEEEEEEeccccccCCcccccccccCCCCCCCEEEEEEEcCCcchHHHHHHHHH
Confidence 57899999999995 4444 5555544331 23456555543 33333334555555
Q ss_pred HhC-----CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006044 54 RRC-----LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (663)
Q Consensus 54 ~~~-----gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir 102 (663)
.+. ++.+....++.+.+...+.....|+. .+..||.++|+++...++
T Consensus 193 ~~~al~~p~v~i~l~~~~~~~~~~~r~~~~lp~~--~~~~~p~~~G~~l~~~~~ 244 (471)
T 1mu5_A 193 KRTYIITPYAEFIFKDPEGNVTYYPRLTNKIPKP--PQEVKPHPYGVDREEIKI 244 (471)
T ss_dssp HHHHHHCTTCEEEEECTTCCEEEECCCCCCCCCC--CCCCCCCGGGCCHHHHHH
T ss_pred HHHHhHCCCeEEEEEECCceEEEecccccccCCc--cceeecCCCchhHHHHHH
Confidence 432 45666555544433332211111333 567899999998887764
No 189
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=46.00 E-value=89 Score=33.11 Aligned_cols=89 Identities=11% Similarity=0.154 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEecCC---------C--CCCHHHHHHHHhc---cC
Q 006044 43 ITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM---------P--DMDGFKLLEHIGL---EM 105 (663)
Q Consensus 43 ~~~re~L~~lL~~~-gy~V~--tasng~eALelLre~k~~pDLVILDI~M---------P--dmDG~ELL~~Ir~---~~ 105 (663)
....+.++.+-+.. +..|. .+.+.++|..+.+ . ..|.|++-..- . +.-.++.+..+.. ..
T Consensus 179 ~~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~-~--Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~ 255 (404)
T 1eep_A 179 TRIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS-V--GADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNT 255 (404)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT-T--TCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh-c--CCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhc
Confidence 34444554444444 44444 4677777665543 2 38988882110 0 1223555555542 45
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
++|||...+-.+.+.+.+++.+||+....
T Consensus 256 ~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 256 NICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp SCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 79999888888889999999999988655
No 190
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=45.93 E-value=87 Score=27.54 Aligned_cols=93 Identities=10% Similarity=0.100 Sum_probs=50.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tas-ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IPVI 110 (663)
+.+|.++|.++...+.++ ..++.+.... .-.+.|+.+.-. ..|+||+-+.-.. .-..++..++. .+.++||
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~i~--~ad~vi~~~~~~~-~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAHLE--CAKWLILTIPNGY-EAGEIVASARAKNPDIEII 102 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTTGG--GCSEEEECCSCHH-HHHHHHHHHHHHCSSSEEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcCcc--cCCEEEEECCChH-HHHHHHHHHHHHCCCCeEE
Confidence 567888888887655443 3466654322 122334332212 3788887543211 12233444443 4667777
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEe
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.... +.+......+.|++..+.
T Consensus 103 ar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 103 ARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEES--SHHHHHHHHHTTCSEEEE
T ss_pred EEEC--CHHHHHHHHHCCCCEEEC
Confidence 6554 445566667889875553
No 191
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=45.68 E-value=1.2e+02 Score=31.38 Aligned_cols=56 Identities=11% Similarity=0.083 Sum_probs=37.8
Q ss_pred HHHHHHHhccCCCcEEE--EecCCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHH
Q 006044 95 FKLLEHIGLEMDLPVIM--MSADGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVV 150 (663)
Q Consensus 95 ~ELL~~Ir~~~~IPVII--LSa~~d~e~v~kAl~~GA~dYLl-----KP~s~eeLk~~Iq~VL 150 (663)
++++++++...++|||+ -.+-...+.+.+++++||+.++. |.-++.+....+...+
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai 258 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAV 258 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHH
Confidence 56777776666788874 34445788899999999999875 4445554444444433
No 192
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=45.58 E-value=1.7e+02 Score=26.26 Aligned_cols=106 Identities=16% Similarity=0.138 Sum_probs=70.2
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEEE---ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVTT---CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 33 giRVLIVDDD~-~~re~L~~lL~~~gy~V~t---asng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
.++++|+-+.+ ...+.++.++...+ .|.. .-+.++..+.+.. .|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~----ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYGS----VDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHTT----CSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHHH----CCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 46888886643 35677777777765 4444 3344465555542 6888875443 334667777764 4677
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
||.. . .....+.+ .|..+++..|-+.++|.+.+..++.
T Consensus 142 vI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7653 2 22344555 7888999999999999999988875
No 193
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=45.10 E-value=1.5e+02 Score=26.50 Aligned_cols=107 Identities=13% Similarity=0.150 Sum_probs=66.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHH--h--C--CCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 006044 33 GLRVLVVDDDITCLRILEQMLR--R--C--LYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~--~--~--gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~ 106 (663)
.++++|+-+.+.. +.+++++. . . ...+...-+.++..++++. .|++|+=.. .+.-|..+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4577777654321 23333333 2 1 2333445555666677664 588886332 3344666777763 56
Q ss_pred CcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 107 LPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 107 IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
+|||... .....+.++.|..+++. +-+.++|.+++..++..
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 7887642 23455667778889999 99999999999988753
No 194
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=43.77 E-value=64 Score=26.58 Aligned_cols=45 Identities=16% Similarity=0.302 Sum_probs=34.2
Q ss_pred cccccHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHHHHHH
Q 006044 222 RVVWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASHLQKF 271 (663)
Q Consensus 222 RVvWTvELHrkFv~AVnqLGidKAvP---KkILElMnVpgLTrenVASHLQKy 271 (663)
.-.||.|=.+.|.+|+...+.+ +| .+|.+.| |-|.++|..|-+++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~--t~~RW~~IA~~l---gRt~~eV~~~y~~L 55 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGG--TPGRWEKIAHEL---GRSVTDVTTKAKQL 55 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHH---TSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCC--CCcHHHHHHHHh---CCCHHHHHHHHHHH
Confidence 3479999999999999998733 34 4577765 67999998884443
No 195
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=42.77 E-value=2e+02 Score=28.54 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=38.9
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.|++++.- |.-+++.+. ..+|||....... ..+.++.| .+++..+ +.++|.+++..++.
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 57777643 443555542 4688886522122 23446778 8899877 99999999988875
No 196
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=42.27 E-value=1.1e+02 Score=31.49 Aligned_cols=78 Identities=15% Similarity=0.174 Sum_probs=54.2
Q ss_pred HhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCC-----CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc
Q 006044 54 RRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHM-----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH 127 (663)
Q Consensus 54 ~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~M-----PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~ 127 (663)
+..+..|. .+.+.+++..+.+ . ..|.|+++=.- .....++++++++...++|||+..+-.+.+.+.+++..
T Consensus 107 ~~~g~~v~~~v~~~~~a~~~~~-~--GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~~ 183 (332)
T 2z6i_A 107 HEAGIIVIPVVPSVALAKRMEK-I--GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFML 183 (332)
T ss_dssp HHTTCEEEEEESSHHHHHHHHH-T--TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHT
T ss_pred HHcCCeEEEEeCCHHHHHHHHH-c--CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHc
Confidence 33455443 5667776655443 3 37988886321 12346788898876678999988888889999999999
Q ss_pred CCCeEEe
Q 006044 128 GACDYLI 134 (663)
Q Consensus 128 GA~dYLl 134 (663)
||+....
T Consensus 184 GAdgV~v 190 (332)
T 2z6i_A 184 GAEAVQV 190 (332)
T ss_dssp TCSEEEE
T ss_pred CCCEEEe
Confidence 9987643
No 197
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=42.06 E-value=38 Score=33.25 Aligned_cols=82 Identities=15% Similarity=0.103 Sum_probs=51.3
Q ss_pred CHHHHHHHHHHcCCCceEEEEec---CC-CCC-CHHHHHHHHhccCCCcEE--EEecCCCHHHHHHHHhcCCCeEEeCCC
Q 006044 65 QAAVALDILRERKGCFDVVLSDV---HM-PDM-DGFKLLEHIGLEMDLPVI--MMSADGRVSAVMRGIRHGACDYLIKPI 137 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI---~M-Pdm-DG~ELL~~Ir~~~~IPVI--ILSa~~d~e~v~kAl~~GA~dYLlKP~ 137 (663)
+-.+.++.+.+.. .|++=+|+ +. |.. .|+++++.||...+.|+. +++. +...++..+.++||+....-..
T Consensus 18 ~l~~~i~~~~~~G--ad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~-dp~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEAG--ADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIV-EPEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHTT--CSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESS-SGGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcC--CCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEcc-CHHHHHHHHHHcCCCEEEECcc
Confidence 4455666665433 56665665 21 222 377999999876666766 6663 4345678899999998866554
Q ss_pred --CHHHHHHHHHHH
Q 006044 138 --REEELKNIWQHV 149 (663)
Q Consensus 138 --s~eeLk~~Iq~V 149 (663)
..++..+.++.+
T Consensus 95 ~~~~~~~~~~~~~i 108 (230)
T 1tqj_A 95 HNASPHLHRTLCQI 108 (230)
T ss_dssp TTTCTTHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 444555555554
No 198
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=41.60 E-value=96 Score=29.99 Aligned_cols=67 Identities=15% Similarity=0.239 Sum_probs=47.5
Q ss_pred HHHHHHHHHHcCCCce-EEEEecCCCC-CCH--HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 66 AAVALDILRERKGCFD-VVLSDVHMPD-MDG--FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 66 g~eALelLre~k~~pD-LVILDI~MPd-mDG--~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
..+.++.+.+.. ++ ++++++.-.+ ..| ++++++++...++|||.-.+-...+.+.++++.||+..+.
T Consensus 153 ~~e~~~~~~~~G--~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 153 LRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALA 223 (253)
T ss_dssp HHHHHHHHHHTT--CSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHCC--CCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHH
Confidence 455555555432 66 5556664222 122 7899999876789999988888888899999999998765
No 199
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=41.20 E-value=2.5e+02 Score=28.54 Aligned_cols=98 Identities=10% Similarity=0.082 Sum_probs=60.7
Q ss_pred HHHHHHhCCCeEEE--ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHH
Q 006044 49 LEQMLRRCLYNVTT--CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (663)
Q Consensus 49 L~~lL~~~gy~V~t--asng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir--~~~~IPVIILSa~~d~e~v~kA 124 (663)
+++.|..-...+.. -.+..+.++.+... .+|.|++|..=...+--.+...++ .....++++=+...+...+..+
T Consensus 30 ~k~~l~~G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~~ 107 (287)
T 2v5j_A 30 FKAALKAGRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQL 107 (287)
T ss_dssp HHHHHHTTCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHH
Confidence 55666542224433 23344555666554 399999998644444334444443 2236778887777788888999
Q ss_pred HhcCCCeEEe-CCCCHHHHHHHHHH
Q 006044 125 IRHGACDYLI-KPIREEELKNIWQH 148 (663)
Q Consensus 125 l~~GA~dYLl-KP~s~eeLk~~Iq~ 148 (663)
++.|++..++ |--+.++++.+++.
T Consensus 108 ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 108 LDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 9999986544 33478887766554
No 200
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=41.07 E-value=2.8e+02 Score=27.71 Aligned_cols=97 Identities=15% Similarity=0.143 Sum_probs=59.7
Q ss_pred HHHHHHhCCC-eE--EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHH
Q 006044 49 LEQMLRRCLY-NV--TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 49 L~~lL~~~gy-~V--~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir--~~~~IPVIILSa~~d~e~v~k 123 (663)
+++.|.. +. .+ .......+.++.+... .+|.|++|..=.-.+--++...++ .....++++=+...+...+..
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 5555554 33 23 3333445555666554 399999998544344444444443 223567777666777888889
Q ss_pred HHhcCCCeEEe-CCCCHHHHHHHHHH
Q 006044 124 GIRHGACDYLI-KPIREEELKNIWQH 148 (663)
Q Consensus 124 Al~~GA~dYLl-KP~s~eeLk~~Iq~ 148 (663)
+++.|++..++ |=-+.++++.+++.
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 99999986433 33478887766554
No 201
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=40.47 E-value=19 Score=37.27 Aligned_cols=69 Identities=10% Similarity=-0.024 Sum_probs=47.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHH
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHI 101 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MP-dmDG~ELL~~I 101 (663)
+-++.+||-++...+.|++-+....-..+...++.+++..+......+|||++|-=-. ..+.-++++.|
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDPPYe~k~~~~~vl~~L 182 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDPSYERKEEYKEIPYAI 182 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECCCCCSTTHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECCCCCCCcHHHHHHHHH
Confidence 3689999999999999988886643233467788888887654433589999996332 12334445444
No 202
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=39.58 E-value=1.5e+02 Score=30.17 Aligned_cols=108 Identities=14% Similarity=0.173 Sum_probs=64.0
Q ss_pred ccEEEEEeCC---HHHHHHHHHHHHhCCC--eEEEE--CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006044 33 GLRVLVVDDD---ITCLRILEQMLRRCLY--NVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (663)
Q Consensus 33 giRVLIVDDD---~~~re~L~~lL~~~gy--~V~ta--sng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~ 105 (663)
.++++|+.+. ....+.+++++.+.+. .|... -+..+..+.+.. .|++++-.. .+.-|..+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4566776651 1234555566555432 23332 233555566554 477766432 2334566667663 5
Q ss_pred CCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 106 DLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 106 ~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.+|||... .. ...+.+..|..+++..|-+.++|.+++..++.
T Consensus 349 G~PvI~~~-~~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 349 GTPVIAAR-VG---GLPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp TCCEEEES-CT---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCCEEecC-CC---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 67887643 22 23455667888999999999999999988875
No 203
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=39.39 E-value=55 Score=31.04 Aligned_cols=77 Identities=14% Similarity=0.160 Sum_probs=51.2
Q ss_pred HHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEecCCC-CCCHHHHHHHHhccC--CCcEEEEecCCCHHHHHHHHh
Q 006044 51 QMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVHMP-DMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIR 126 (663)
Q Consensus 51 ~lL~~~gy~V-~tasng~eALelLre~k~~pDLVILDI~MP-dmDG~ELL~~Ir~~~--~IPVIILSa~~d~e~v~kAl~ 126 (663)
+..+..+..+ ..+.+..++....+. ..|.|.+ .| +..|++.+++++... ++||++..+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 3344445442 247888888766542 3898886 22 123678888886544 48988877665 677788889
Q ss_pred cCCCeEEe
Q 006044 127 HGACDYLI 134 (663)
Q Consensus 127 ~GA~dYLl 134 (663)
.||+.+..
T Consensus 168 ~Ga~gv~v 175 (212)
T 2v82_A 168 AGCAGAGL 175 (212)
T ss_dssp HTCSEEEE
T ss_pred cCCCEEEE
Confidence 99999874
No 204
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=39.24 E-value=79 Score=30.80 Aligned_cols=68 Identities=13% Similarity=0.181 Sum_probs=47.5
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCC---CCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFD-VVLSDVHMP---DMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pD-LVILDI~MP---dmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+..+.+.+.. .| |.+.|+.-. ...-++++++|++...+|||+--.-.+.+.+.++++.||+..++
T Consensus 36 ~~~~~a~~~~~~G--~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~i 107 (247)
T 3tdn_A 36 LLRDWVVEVEKRG--AGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSI 107 (247)
T ss_dssp EHHHHHHHHHHTT--CSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECC
T ss_pred CHHHHHHHHHHcC--CCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeeh
Confidence 4455555555432 55 455676422 12237889999877899999988888889999999999877654
No 205
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=39.18 E-value=2e+02 Score=31.56 Aligned_cols=98 Identities=16% Similarity=0.236 Sum_probs=64.3
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEecCCCC------------CC
Q 006044 33 GLRVLVVD----DDITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMPD------------MD 93 (663)
Q Consensus 33 giRVLIVD----DD~~~re~L~~lL~~~-gy~V--~tasng~eALelLre~k~~pDLVILDI~MPd------------mD 93 (663)
+..++++| +.....+.++.+-+.. +..| ..+.+.++|..+++.. .|.|++.+. |+ ..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aG---aD~I~Vg~g-~Gs~~~tr~~~g~g~p 318 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAG---VSAVKVGIG-PGSICTTRIVTGVGVP 318 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHT---CSEEEECSS-CCTTBCHHHHHCCCCC
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhC---CCEEEECCC-CCcCcccccccCCCcc
Confidence 45677776 4455666777766665 3333 3577888887766542 798887532 11 12
Q ss_pred HHHHHHHHhc---cCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 94 GFKLLEHIGL---EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 94 G~ELL~~Ir~---~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
-++++..+.. ..++|||.--+-.+...+.+++.+||+..+.
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~i 362 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMV 362 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEe
Confidence 3455555432 3479999877778889999999999988765
No 206
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=39.10 E-value=50 Score=31.16 Aligned_cols=62 Identities=23% Similarity=0.300 Sum_probs=43.1
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHc--CCCceEEEEecCCC
Q 006044 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRER--KGCFDVVLSDVHMP 90 (663)
Q Consensus 29 ~fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasng~eALelLre~--k~~pDLVILDI~MP 90 (663)
.++.+.+|.-||-++...+..++.+...+. .|. ...+..+.+..+... ...||+|++|....
T Consensus 79 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 79 LLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred hCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 345567999999999999999998887654 243 566776665544320 03599999997443
No 207
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=38.96 E-value=1.6e+02 Score=28.25 Aligned_cols=67 Identities=16% Similarity=0.180 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc---CCCeEEe
Q 006044 66 AAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI 134 (663)
Q Consensus 66 g~eALelLre~k~~pD-LVILDI~MPdm---DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~---GA~dYLl 134 (663)
..+.++.+.+.. +| ++++++.-.+. -.++++++++...++|||.-.+-...+.+.++++. ||+.++.
T Consensus 151 ~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 151 LWDVLERLDSEG--CSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp HHHHHHHHHHTT--CCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred HHHHHHHHHhCC--CCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 355555555543 66 55677654322 24788888887678999998888888889999998 9988654
No 208
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=38.79 E-value=40 Score=34.00 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=44.2
Q ss_pred CCCCCCCcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 006044 215 PSTTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLY 274 (663)
Q Consensus 215 ~S~~KKpRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHLQKyRl~ 274 (663)
+....|..-.||.|=+..|++|+...|-+= ..|-++ |++-|..+|.+|-.+|+..
T Consensus 126 pe~~~k~s~~WTeEE~~lFleAl~kYGKDW---~~IAk~--VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 126 PEVIQKCNARWTTEEQLLAVQAIRKYGRDF---QAISDV--IGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHHSSCH---HHHHHH--HSSCCHHHHHHHHHHTTTT
T ss_pred CCCCCccCCCCCHHHHHHHHHHHHHHCcCH---HHHHHH--cCCCCHHHHHHHHHHHHHH
Confidence 344456667899999999999999999542 468886 7889999999998877753
No 209
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=38.36 E-value=1.7e+02 Score=30.42 Aligned_cols=108 Identities=14% Similarity=0.119 Sum_probs=69.3
Q ss_pred ccEEEEEeCCH-HHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006044 33 GLRVLVVDDDI-TCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD~-~~re~L~~lL~~~gy~V~-tas-ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPV 109 (663)
.++++||-+.+ ..++.++++....+-.|. ... +.++..+.+.. .|++++--. .+.-|+-+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FEPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cCCCCHHHHHHHH--CCCCE
Confidence 56788886654 466777777766543443 222 33333355543 588776443 2444566677663 46788
Q ss_pred EEEecCCCHHHHHHHHhcC---------CCeEEeCCCCHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~G---------A~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|... ..-..+.+..| ..+++..|-+.++|.+++..++.
T Consensus 393 I~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 393 VVAR----TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EEES----SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred EEeC----CCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 8632 23455667777 78999999999999999988873
No 210
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=38.09 E-value=92 Score=30.63 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=46.7
Q ss_pred HHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCH-------HHHHHHHhcc-CCCcEEEEecCCCHHHHHH
Q 006044 52 MLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLE-MDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 52 lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG-------~ELL~~Ir~~-~~IPVIILSa~~d~e~v~k 123 (663)
.+++.|..+..+-+...-++.++......|+|++.-.-|+..| ++-++++|+. .+++ |.+.+--..+.+.+
T Consensus 107 ~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t~~~ 185 (228)
T 3ovp_A 107 DIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLD-IEVDGGVGPDTVHK 185 (228)
T ss_dssp HHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCSTTTHHH
T ss_pred HHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCC-EEEeCCcCHHHHHH
Confidence 3344555554333322222222222223788887666677655 4445566543 3444 45666666788899
Q ss_pred HHhcCCCeEEe
Q 006044 124 GIRHGACDYLI 134 (663)
Q Consensus 124 Al~~GA~dYLl 134 (663)
+.++||+.++.
T Consensus 186 ~~~aGAd~~Vv 196 (228)
T 3ovp_A 186 CAEAGANMIVS 196 (228)
T ss_dssp HHHHTCCEEEE
T ss_pred HHHcCCCEEEE
Confidence 99999998765
No 211
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=37.90 E-value=37 Score=32.12 Aligned_cols=57 Identities=12% Similarity=0.079 Sum_probs=36.5
Q ss_pred CHHHHHHHHhcc-CCCcEEE--EecCCCHHHHHHHHhcCCCeEEeCCCCH-HHHHHHHHHH
Q 006044 93 DGFKLLEHIGLE-MDLPVIM--MSADGRVSAVMRGIRHGACDYLIKPIRE-EELKNIWQHV 149 (663)
Q Consensus 93 DG~ELL~~Ir~~-~~IPVII--LSa~~d~e~v~kAl~~GA~dYLlKP~s~-eeLk~~Iq~V 149 (663)
.|+++++.+|+. +++||.+ +..+.....+.++.++||+..++--... +.+...++.+
T Consensus 39 ~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~ 99 (211)
T 3f4w_A 39 EGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAA 99 (211)
T ss_dssp HTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHH
Confidence 578889999865 6788754 3333333338889999998887744432 4445444443
No 212
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=37.76 E-value=1.3e+02 Score=28.92 Aligned_cols=68 Identities=16% Similarity=0.209 Sum_probs=46.7
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc---CCCeEEe
Q 006044 65 QAAVALDILRERKGCFD-VVLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH---GACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pD-LVILDI~MPdm---DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~---GA~dYLl 134 (663)
+..+.++.+.+.. +| ++++++.-.++ -.++++++++...++|||.-.+-.+.+.+.++++. ||+.++.
T Consensus 147 ~~~e~~~~~~~~G--~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 147 DLYETLDRLNKEG--CARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp BHHHHHHHHHHTT--CCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CHHHHHHHHHhCC--CCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 4556555555432 67 55677642211 13788899887678999998888888999999999 9998764
No 213
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=37.20 E-value=1.1e+02 Score=31.92 Aligned_cols=66 Identities=12% Similarity=-0.019 Sum_probs=45.4
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 60 V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
...+.+.+++.+.++. ..|+|.+|- |+--++-+.++....-..|..|+.-+.+.+.+..+.|++.+
T Consensus 213 eVEvdtlde~~eAl~a---GaD~I~LDn----~~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 213 QIEVETLDQLRTALAH---GARSVLLDN----FTLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSHHHHHHHHHT---TCEEEEEES----CCHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 3578899998888874 389999995 34333333344323334566888888888888889999654
No 214
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=37.08 E-value=1.2e+02 Score=34.42 Aligned_cols=102 Identities=14% Similarity=0.164 Sum_probs=67.7
Q ss_pred ccEEEEE----eCCHHHHHHHHHHHHhCCCeEEEE---CCHHHHHHHHHHcCCCceEEEEecCCCC-CC-HHHHHHHHh-
Q 006044 33 GLRVLVV----DDDITCLRILEQMLRRCLYNVTTC---SQAAVALDILRERKGCFDVVLSDVHMPD-MD-GFKLLEHIG- 102 (663)
Q Consensus 33 giRVLIV----DDD~~~re~L~~lL~~~gy~V~ta---sng~eALelLre~k~~pDLVILDI~MPd-mD-G~ELL~~Ir- 102 (663)
+-+||++ |-|..=...+..+|+..||+|... ...++.++.+++.. +|+|.+-..|.. ++ --++++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~~--~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEVN--ADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHHT--CSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcC--CCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578877 667777888999999999998643 46788888888776 999999987743 11 123455564
Q ss_pred ccCCCcEEEEecCCCHHHHHHHH---hcCCCeEEeCC
Q 006044 103 LEMDLPVIMMSADGRVSAVMRGI---RHGACDYLIKP 136 (663)
Q Consensus 103 ~~~~IPVIILSa~~d~e~v~kAl---~~GA~dYLlKP 136 (663)
...++||++=-+--..+...+.+ -.||+.|....
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~DA 212 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNA 212 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCSH
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECCH
Confidence 33578877655444554432111 12888876643
No 215
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=37.05 E-value=28 Score=32.86 Aligned_cols=81 Identities=11% Similarity=0.125 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhccC-CCcEEE--EecCCCHH-HHHHHHhcCCCeEEeCCCC
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLEM-DLPVIM--MSADGRVS-AVMRGIRHGACDYLIKPIR 138 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPd--mDG~ELL~~Ir~~~-~IPVII--LSa~~d~e-~v~kAl~~GA~dYLlKP~s 138 (663)
+.+++++.++......| ++++.++- .+|.++++.|++.. +.|+++ +.. +-.+ .+..+.++||+....-+..
T Consensus 11 ~~~~~~~~~~~~~~~v~--~iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~-di~~~~~~~a~~~Gad~v~vh~~~ 87 (207)
T 3ajx_A 11 STEAALELAGKVAEYVD--IIELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTM-DAGELEADIAFKAGADLVTVLGSA 87 (207)
T ss_dssp CHHHHHHHHHHHGGGCS--EEEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEEC-SCHHHHHHHHHHTTCSEEEEETTS
T ss_pred CHHHHHHHHHHhhccCC--EEEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEec-CccHHHHHHHHhCCCCEEEEeccC
Confidence 45556665554431123 35554442 35677888887653 788875 443 3133 4778899999988766654
Q ss_pred H-HHHHHHHHH
Q 006044 139 E-EELKNIWQH 148 (663)
Q Consensus 139 ~-eeLk~~Iq~ 148 (663)
. +.+..+++.
T Consensus 88 ~~~~~~~~~~~ 98 (207)
T 3ajx_A 88 DDSTIAGAVKA 98 (207)
T ss_dssp CHHHHHHHHHH
T ss_pred ChHHHHHHHHH
Confidence 4 455544443
No 216
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=36.48 E-value=41 Score=34.33 Aligned_cols=78 Identities=10% Similarity=0.093 Sum_probs=48.2
Q ss_pred CccEEEEEeCC-----HHHHHHHHHHHHhCC-CeEEEECCHH-----HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHH
Q 006044 32 AGLRVLVVDDD-----ITCLRILEQMLRRCL-YNVTTCSQAA-----VALDILRERKGCFDVVLSDVHMPDMDGFKLLEH 100 (663)
Q Consensus 32 ~giRVLIVDDD-----~~~re~L~~lL~~~g-y~V~tasng~-----eALelLre~k~~pDLVILDI~MPdmDG~ELL~~ 100 (663)
+.+|||||.-. +.....|.++|++.+ |.|+...+.. +.+. ..-..+|+||++..+...+-- ..+.
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~---~~L~~~D~vV~~~~~~~l~~~-~~~~ 78 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV---LDFSPYQLVVLDYNGDSWPEE-TNRR 78 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC---CCCTTCSEEEECCCSSCCCHH-HHHH
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh---hhhhcCCEEEEeCCCCcCCHH-HHHH
Confidence 45899999762 566789999999887 9998876531 2221 112349999998865544322 2222
Q ss_pred Hh--ccCCCcEEEEe
Q 006044 101 IG--LEMDLPVIMMS 113 (663)
Q Consensus 101 Ir--~~~~IPVIILS 113 (663)
|. -.....+|.+-
T Consensus 79 l~~yV~~Ggglv~~H 93 (281)
T 4e5v_A 79 FLEYVQNGGGVVIYH 93 (281)
T ss_dssp HHHHHHTTCEEEEEG
T ss_pred HHHHHHcCCCEEEEe
Confidence 21 12356677664
No 217
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=35.81 E-value=1.6e+02 Score=29.44 Aligned_cols=42 Identities=12% Similarity=0.256 Sum_probs=30.0
Q ss_pred CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 105 MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 105 ~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
..+|||+....... .+.++.| .+++..| +.++|.+++..++.
T Consensus 300 ~G~PvI~~~~~~~~---~e~v~~g-~g~lv~~-d~~~la~~i~~ll~ 341 (384)
T 1vgv_A 300 LGKPVLVMRDTTER---PEAVTAG-TVRLVGT-DKQRIVEEVTRLLK 341 (384)
T ss_dssp GTCCEEEESSCCSC---HHHHHHT-SEEEECS-SHHHHHHHHHHHHH
T ss_pred cCCCEEEccCCCCc---chhhhCC-ceEEeCC-CHHHHHHHHHHHHh
Confidence 47898876432222 2235668 8899988 99999999988875
No 218
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=35.80 E-value=1.2e+02 Score=29.03 Aligned_cols=83 Identities=16% Similarity=0.100 Sum_probs=54.8
Q ss_pred HHHHHHHHhC-CCeEE-EECCHHHHHHHHHHcCCCceEE---EEecCCCC-----CCHHHHHHHHhccCCCcEEEEecCC
Q 006044 47 RILEQMLRRC-LYNVT-TCSQAAVALDILRERKGCFDVV---LSDVHMPD-----MDGFKLLEHIGLEMDLPVIMMSADG 116 (663)
Q Consensus 47 e~L~~lL~~~-gy~V~-tasng~eALelLre~k~~pDLV---ILDI~MPd-----mDG~ELL~~Ir~~~~IPVIILSa~~ 116 (663)
+.++.+-+.. +..+. .+.+.+++...... ..|+| +..+. +. ...++++++++.. ++|||...+-.
T Consensus 122 ~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI~ 196 (234)
T 1yxy_A 122 SFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKIH 196 (234)
T ss_dssp HHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCCC
T ss_pred HHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCCC
Confidence 3444443332 44443 56777887666543 37887 33321 21 1246888888766 89999888888
Q ss_pred CHHHHHHHHhcCCCeEEe
Q 006044 117 RVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 117 d~e~v~kAl~~GA~dYLl 134 (663)
+.+.+.++++.||+.++.
T Consensus 197 s~~~~~~~~~~Gad~v~v 214 (234)
T 1yxy_A 197 SPEEAKKINDLGVAGIVV 214 (234)
T ss_dssp SHHHHHHHHTTCCSEEEE
T ss_pred CHHHHHHHHHCCCCEEEE
Confidence 899999999999998765
No 219
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=35.76 E-value=1.4e+02 Score=31.30 Aligned_cols=91 Identities=9% Similarity=0.039 Sum_probs=57.0
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH-hccCCC
Q 006044 35 RVLVVDDDITCLRILEQMLR----RCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107 (663)
Q Consensus 35 RVLIVDDD~~~re~L~~lL~----~~gy--~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I-r~~~~I 107 (663)
-|||-|.+....-.+...++ ...+ ....+.+.+++.+.++. ..|+|.+|- |+- +.++++ +....-
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn----~~~-~~l~~av~~l~~~ 275 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDN----FSL-EMMREAVKINAGR 275 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEES----CCH-HHHHHHHHHHTTS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECC----CCH-HHHHHHHHHhCCC
Confidence 37777766443322333332 2222 34588999998888874 389999996 333 333333 322233
Q ss_pred cEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 108 PVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 108 PVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
..|..|+.-+.+.+.+..+.|++.+-
T Consensus 276 v~ieaSGGIt~~~I~~~a~tGVD~is 301 (320)
T 3paj_A 276 AALENSGNITLDNLKECAETGVDYIS 301 (320)
T ss_dssp SEEEEESSCCHHHHHHHHTTTCSEEE
T ss_pred CeEEEECCCCHHHHHHHHHcCCCEEE
Confidence 46778888899999998899986553
No 220
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=35.66 E-value=90 Score=32.55 Aligned_cols=90 Identities=17% Similarity=0.187 Sum_probs=54.9
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006044 36 VLVVDDDITCLRILEQMLR----RCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (663)
Q Consensus 36 VLIVDDD~~~re~L~~lL~----~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPV 109 (663)
|||=|.+....-.+...++ ... .....+.+.+|+.+.++.. .|+|.+|= |+--++-+.++....-..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~aG---aDiImLDn----~s~~~l~~av~~~~~~v~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSNN---VDMILLDN----MSISEIKKAVDIVNGKSV 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHTT---CSEEEEES----CCHHHHHHHHHHHTTSSE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHcC---CCEEEECC----CCHHHHHHHHHhhcCceE
Confidence 6665655443322333332 221 2345899999999998753 89999995 333233333332223346
Q ss_pred EEEecCCCHHHHHHHHhcCCCeE
Q 006044 110 IMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dY 132 (663)
|..|+--..+.+.+..+.|++.+
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~I 276 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYI 276 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEE
Confidence 77888888888888888888644
No 221
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=35.60 E-value=1.1e+02 Score=28.97 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=46.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe--E-EEECCHHHHHHHHHHc------------C-CCceEEEEecCCCCCC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN--V-TTCSQAAVALDILRER------------K-GCFDVVLSDVHMPDMD 93 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~--V-~tasng~eALelLre~------------k-~~pDLVILDI~MPdmD 93 (663)
+|.+.+|..||-++...+..++.+...++. | ....+..+.+..+... . ..+|+|++|...+.
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~~~-- 159 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADKEN-- 159 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCGGG--
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCHHH--
Confidence 444568999999999999999998876542 3 3566777766544321 1 35999999964332
Q ss_pred HHHHHHHH
Q 006044 94 GFKLLEHI 101 (663)
Q Consensus 94 G~ELL~~I 101 (663)
-.++++.+
T Consensus 160 ~~~~l~~~ 167 (239)
T 2hnk_A 160 YPNYYPLI 167 (239)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 23445554
No 222
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=35.56 E-value=1.7e+02 Score=28.11 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=45.0
Q ss_pred CHHHHHHHHHHcCCCceE-EEEecCCCCC---CHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 65 QAAVALDILRERKGCFDV-VLSDVHMPDM---DGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 65 ng~eALelLre~k~~pDL-VILDI~MPdm---DG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+..+..+.+.+.. .|. .+.|...... ..+++++.++...++|+++--.-.+.+.+.++++.||+..++
T Consensus 31 d~~~~a~~~~~~G--ad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~l 102 (253)
T 1thf_D 31 DPVELGKFYSEIG--IDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHcC--CCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 4444445554432 554 3455432211 235677778777789999987778888899999999988765
No 223
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=35.54 E-value=2.7e+02 Score=27.70 Aligned_cols=100 Identities=12% Similarity=0.149 Sum_probs=53.8
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCeEEEEC--CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 34 LRVLVV-DDDITCLRILEQMLRRCLYNVTTCS--QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 34 iRVLIV-DDD~~~re~L~~lL~~~gy~V~tas--ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
++++++ .+.+..++.+++++... -.|.... ...+..+.+.. .|++++.- .|+ +++.+ ...+|+|
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~-~~v~~~g~~g~~~~~~~~~~----ad~~v~~S-----~g~-~lEA~--a~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGV-RNFVLLDPLEYGSMAALMRA----SLLLVTDS-----GGL-QEEGA--ALGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTC-TTEEEECCCCHHHHHHHHHT----EEEEEESC-----HHH-HHHHH--HTTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccC-CCEEEECCCCHHHHHHHHHh----CcEEEECC-----cCH-HHHHH--HcCCCEE
Confidence 455554 55554555555554321 2343331 22233333332 57777642 344 44554 3578998
Q ss_pred EEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 111 MMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 111 ILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
+.......... ++.| .+++.. .+.++|.+++.+++.
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 75433333222 4455 467774 489999999988874
No 224
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=35.14 E-value=85 Score=30.39 Aligned_cols=78 Identities=15% Similarity=0.292 Sum_probs=53.8
Q ss_pred CHHHHHHHHHHcCCCce-EEEEecC----CCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhc-----C-CCeEE
Q 006044 65 QAAVALDILRERKGCFD-VVLSDVH----MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRH-----G-ACDYL 133 (663)
Q Consensus 65 ng~eALelLre~k~~pD-LVILDI~----MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~-----G-A~dYL 133 (663)
+..+....+.+. .++ +++.++. +.+. .++++++++...++|||...+-...+.+.++++. | |++.+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 455555555443 366 6666653 2233 3889999876668999998888888999999988 9 88765
Q ss_pred e------CCCCHHHHHHH
Q 006044 134 I------KPIREEELKNI 145 (663)
Q Consensus 134 l------KP~s~eeLk~~ 145 (663)
. .+++.+++++.
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 4 46666666543
No 225
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=34.93 E-value=1.1e+02 Score=30.50 Aligned_cols=90 Identities=8% Similarity=-0.003 Sum_probs=55.7
Q ss_pred HHHHhCC-CeEEEECCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcC
Q 006044 51 QMLRRCL-YNVTTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHG 128 (663)
Q Consensus 51 ~lL~~~g-y~V~tasng~eALelLre~-k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~G 128 (663)
+.|.+.+ .-|....+.++++++++.. ....++|=+.+ -..++++.++++++...-.+|-.-.--+.+.+..++++|
T Consensus 29 ~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~--~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AG 106 (232)
T 4e38_A 29 NQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITF--RSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAG 106 (232)
T ss_dssp HHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEET--TSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHT
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeC--CCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcC
Confidence 3344333 3456677777777766542 22356555544 455789999999764322444444456789999999999
Q ss_pred CCeEEeCCCCHHHHH
Q 006044 129 ACDYLIKPIREEELK 143 (663)
Q Consensus 129 A~dYLlKP~s~eeLk 143 (663)
|+ |+.-|-...++.
T Consensus 107 A~-fIvsP~~~~~vi 120 (232)
T 4e38_A 107 AT-FVVSPGFNPNTV 120 (232)
T ss_dssp CS-EEECSSCCHHHH
T ss_pred CC-EEEeCCCCHHHH
Confidence 96 555675444443
No 226
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.92 E-value=93 Score=24.39 Aligned_cols=45 Identities=11% Similarity=0.051 Sum_probs=34.6
Q ss_pred CCCCcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHH
Q 006044 218 TKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASH 267 (663)
Q Consensus 218 ~KKpRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASH 267 (663)
.++....||.|=|+.|.+++.+.| .+- .+|-.+ +|+-|..++..|
T Consensus 8 ~r~~~~~WT~eE~~~F~~~~~~~g-k~w--~~Ia~~--l~~rt~~~~v~~ 52 (61)
T 2eqr_A 8 DRQFMNVWTDHEKEIFKDKFIQHP-KNF--GLIASY--LERKSVPDCVLY 52 (61)
T ss_dssp CCSCCCSCCHHHHHHHHHHHHHST-TCH--HHHHHH--CTTSCHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhC-CCH--HHHHHH--cCCCCHHHHHHH
Confidence 345566899999999999999998 222 467766 788888887654
No 227
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=34.81 E-value=87 Score=31.12 Aligned_cols=80 Identities=13% Similarity=0.180 Sum_probs=47.9
Q ss_pred EEECCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH
Q 006044 61 TTCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (663)
Q Consensus 61 ~tasng~eALelLre~-k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~ 139 (663)
....+.++++.+.+.. ....++|=+.++ .-++++.++.|++...-.+|-.-.-.+.+.+.+++++||. |+.-|...
T Consensus 19 ir~~~~~~a~~~a~al~~gGi~~iEvt~~--t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~-fivsP~~~ 95 (217)
T 3lab_A 19 IVIDDLVHAIPMAKALVAGGVHLLEVTLR--TEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQ-FIVSPGLT 95 (217)
T ss_dssp ECCSCGGGHHHHHHHHHHTTCCEEEEETT--STTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCS-EEEESSCC
T ss_pred EEcCCHHHHHHHHHHHHHcCCCEEEEeCC--CccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCC-EEEeCCCc
Confidence 3344455555444321 112454444443 3468888888875443356666666789999999999997 55556544
Q ss_pred HHHH
Q 006044 140 EELK 143 (663)
Q Consensus 140 eeLk 143 (663)
.++.
T Consensus 96 ~evi 99 (217)
T 3lab_A 96 PELI 99 (217)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 228
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=34.62 E-value=51 Score=32.20 Aligned_cols=62 Identities=15% Similarity=0.237 Sum_probs=47.7
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 67 AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 67 ~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
+.+++.+++.+ ||+| .+ ||+.- -++++++++..++|||+=---.+.+.+.+|+++||+..-+
T Consensus 117 ~~~~~~i~~~~--PD~i--Ei-LPGi~-p~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKVQ--PDCI--EL-LPGII-PEQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHHC--CSEE--EE-ECTTC-HHHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhcC--CCEE--EE-CCchh-HHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 35777777766 8977 33 57754 3788999877899998765567889999999999987654
No 229
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=34.61 E-value=21 Score=33.84 Aligned_cols=50 Identities=8% Similarity=0.096 Sum_probs=34.0
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEE
Q 006044 34 LR-VLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLS 85 (663)
Q Consensus 34 iR-VLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVIL 85 (663)
|| |+|||....+-..+.++|++.++.+..+...+..++.+.... +|.||+
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~~--~dglil 51 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERID--PDRLII 51 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHC--CSEEEE
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhCC--CCEEEE
Confidence 45 999997776667788899988888776655322233343323 788777
No 230
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=34.37 E-value=1.4e+02 Score=29.53 Aligned_cols=105 Identities=24% Similarity=0.351 Sum_probs=60.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
++++|+.+.+ .+.++++++..+ -.|......++..+.+.. .|++++--. .+.-|..+++.+. ..+|||.
T Consensus 229 ~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~-~e~~~~~~~Ea~a--~G~Pvi~ 299 (374)
T 2iw1_A 229 TLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAY-QEAAGIVLLEAIT--AGLPVLT 299 (374)
T ss_dssp EEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--HTCCEEE
T ss_pred eEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccc-cCCcccHHHHHHH--CCCCEEE
Confidence 4666665533 134444444332 134433333344444443 477776433 2334566666663 4678887
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeC-CCCHHHHHHHHHHHHH
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIK-PIREEELKNIWQHVVR 151 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlK-P~s~eeLk~~Iq~VLr 151 (663)
....... +.+..|..+++.. |.+.++|.+++..++.
T Consensus 300 ~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 300 TAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp ETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred ecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 5433333 3455567889997 8999999999998875
No 231
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=33.55 E-value=77 Score=24.59 Aligned_cols=45 Identities=22% Similarity=0.352 Sum_probs=35.9
Q ss_pred cccHHHHHHHHHHHHHhccCcccHHHHHHHhcCC-CCCHHHHHHHHHHHH
Q 006044 224 VWSVELHQQFVSAVNQLGIDKAVPKRILELMNVP-GLTRENVASHLQKFR 272 (663)
Q Consensus 224 vWTvELHrkFv~AVnqLGidKAvPKkILElMnVp-gLTrenVASHLQKyR 272 (663)
.||.|-.++++++|.+.|..+= +.|.++ ++ +-|..++..|-++|.
T Consensus 11 ~WT~eED~~L~~~v~~~G~~~W--~~IA~~--~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 11 NWGADEELLLIDACETLGLGNW--ADIADY--VGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCH--HHHHHH--HCSSCCHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHCcCCH--HHHHHH--HCCCCCHHHHHHHHHHHc
Confidence 5999999999999999996543 467776 46 788899888866653
No 232
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=33.30 E-value=45 Score=28.93 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=45.8
Q ss_pred CCccEEEEEeCC----HHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccC
Q 006044 31 PAGLRVLVVDDD----ITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEM 105 (663)
Q Consensus 31 P~giRVLIVDDD----~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~ 105 (663)
|..||||+|=.. ......|++.+...++++. .+.+..++-..+ ..+|+||+-..+... ++-++..-...
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~~ 75 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIAETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKPK 75 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEECSTTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEecHHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhccc
Confidence 445778777432 2667788888887776432 233333333322 248999998877543 33333332234
Q ss_pred CCcEEEEec
Q 006044 106 DLPVIMMSA 114 (663)
Q Consensus 106 ~IPVIILSa 114 (663)
++||+.+..
T Consensus 76 ~~pv~~I~~ 84 (109)
T 2l2q_A 76 GIPIEIINT 84 (109)
T ss_dssp TCCEEECCH
T ss_pred CCCEEEECh
Confidence 789988764
No 233
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=33.21 E-value=67 Score=34.73 Aligned_cols=53 Identities=25% Similarity=0.393 Sum_probs=29.5
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEEC---CHH----HHHHHHHHcCCCceEEEEec
Q 006044 33 GLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCS---QAA----VALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 33 giRVLIVDDD~---~~re~L~~lL~~~gy~V~tas---ng~----eALelLre~k~~pDLVILDI 87 (663)
|.||++||-|+ ...+.+..+-...+..+..+. +.. ++++.++.. .+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~~--~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKLK--FYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHhC--CCCEEEEEC
Confidence 67899998885 223333333333355554332 222 334444433 499999998
No 234
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=32.70 E-value=60 Score=31.24 Aligned_cols=68 Identities=16% Similarity=0.226 Sum_probs=46.5
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~gy~---V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
+|.+-+|..||-++...+..++.+...+.. |. ...++.+.+..+. ...||+|++|..... -.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHHHH
Confidence 455679999999999999999999887653 54 4556655544331 235999999975433 33455554
No 235
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=32.25 E-value=2.4e+02 Score=28.74 Aligned_cols=85 Identities=13% Similarity=0.083 Sum_probs=55.5
Q ss_pred HHHHHHHHHhCCCeE-EEECCHHHHHHHHHHcCCCceEEEEecC-C--CCCCHHHHHHHHh-cc-CCCcEEEEecCCCHH
Q 006044 46 LRILEQMLRRCLYNV-TTCSQAAVALDILRERKGCFDVVLSDVH-M--PDMDGFKLLEHIG-LE-MDLPVIMMSADGRVS 119 (663)
Q Consensus 46 re~L~~lL~~~gy~V-~tasng~eALelLre~k~~pDLVILDI~-M--PdmDG~ELL~~Ir-~~-~~IPVIILSa~~d~e 119 (663)
++.+.......|..+ ..+.+.+|+...+. . .+|+|=+.-. + -..| ++...++. .. .++|+|.-++-...+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~-~--ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALK-L--SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTT-S--CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHh-c--CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 334444445567664 47788888766553 2 3787755421 1 1122 44454543 22 368999999999999
Q ss_pred HHHHHHhcCCCeEEe
Q 006044 120 AVMRGIRHGACDYLI 134 (663)
Q Consensus 120 ~v~kAl~~GA~dYLl 134 (663)
.+.++.++||+.+|+
T Consensus 234 dv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999987
No 236
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=32.16 E-value=3.2e+02 Score=28.61 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=71.0
Q ss_pred cEEEEEeC--CH------------HHHHHHHHHHHhCCC--eEEEE--CCHHHHHHHHHHcCCCceEEEEecCCCCCCHH
Q 006044 34 LRVLVVDD--DI------------TCLRILEQMLRRCLY--NVTTC--SQAAVALDILRERKGCFDVVLSDVHMPDMDGF 95 (663)
Q Consensus 34 iRVLIVDD--D~------------~~re~L~~lL~~~gy--~V~ta--sng~eALelLre~k~~pDLVILDI~MPdmDG~ 95 (663)
.+++|+.+ .+ ..++.+++++.+.+. .|... -+.++..+.+.......|++++--. .+.-|+
T Consensus 295 ~~l~i~G~~~~~~~~y~~l~~~~~~y~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~a~~~~dv~v~pS~-~Eg~~~ 373 (499)
T 2r60_A 295 NLVLTLRGIENPFEDYSRAGQEEKEILGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSF-YEPFGL 373 (499)
T ss_dssp EEEEEESSCSBTTTBCTTSCHHHHHHHHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHHHHHTTCEEEECCS-CBCCCS
T ss_pred eEEEEECCCCCcccccccccccchHHHHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHhcCcCCCEEEECcc-cCCCCc
Confidence 46788877 21 226777888776543 24433 3456766776652100288887433 233456
Q ss_pred HHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 96 KLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 96 ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
-+++.+. ..+|||... .....+.+..|..+++..|-+.++|.+++..++.
T Consensus 374 ~~lEAma--~G~PvI~s~----~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 374 APVEAMA--SGLPAVVTR----NGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp HHHHHHH--TTCCEEEES----SBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred HHHHHHH--cCCCEEEec----CCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 6777763 577888643 2235566778888999999999999999988763
No 237
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=31.79 E-value=1e+02 Score=30.65 Aligned_cols=76 Identities=13% Similarity=0.200 Sum_probs=49.5
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCC------CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCC
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHM------PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIR 138 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~M------PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s 138 (663)
+.++..+.+.. .|++|+-... ++.-|..+++.+. ..+|||. |.... ..+.+..| .+++..|-+
T Consensus 262 ~~~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~G~PvI~-~~~~~---~~e~i~~~-~g~~~~~~d 330 (394)
T 3okp_A 262 EYQDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--CGVPVIA-GTSGG---APETVTPA-TGLVVEGSD 330 (394)
T ss_dssp CHHHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--TTCCEEE-CSSTT---GGGGCCTT-TEEECCTTC
T ss_pred CHHHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--cCCCEEE-eCCCC---hHHHHhcC-CceEeCCCC
Confidence 33555555543 4777764433 1444666777763 4678886 32222 33445667 899999999
Q ss_pred HHHHHHHHHHHHH
Q 006044 139 EEELKNIWQHVVR 151 (663)
Q Consensus 139 ~eeLk~~Iq~VLr 151 (663)
.++|.+++..++.
T Consensus 331 ~~~l~~~i~~l~~ 343 (394)
T 3okp_A 331 VDKLSELLIELLD 343 (394)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998874
No 238
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=31.37 E-value=3e+02 Score=29.67 Aligned_cols=99 Identities=15% Similarity=0.212 Sum_probs=61.3
Q ss_pred ccEEEEEeC----CHHHHHHHHHHHHhC-CCeE--EEECCHHHHHHHHHHcCCCceEEEEecCCC-----------CCCH
Q 006044 33 GLRVLVVDD----DITCLRILEQMLRRC-LYNV--TTCSQAAVALDILRERKGCFDVVLSDVHMP-----------DMDG 94 (663)
Q Consensus 33 giRVLIVDD----D~~~re~L~~lL~~~-gy~V--~tasng~eALelLre~k~~pDLVILDI~MP-----------dmDG 94 (663)
+..+++++- .....+.++.+-+.. +..| ....+.++|..+.+ . ..|.|.+...-. +...
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~-~--G~d~I~v~~~~G~~~~~~~~~~~g~p~ 325 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIK-A--GADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHH-T--TCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHH-c--CCCEEEEcCCCCccccccccCCCCccH
Confidence 445555532 234556666655554 3443 35677788755554 3 388888744210 1223
Q ss_pred HHHHHHHh---ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 95 FKLLEHIG---LEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 95 ~ELL~~Ir---~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
++++..+. ...++|||.-.+-.+...+.+++.+||+....
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 44555443 23579999988888999999999999987654
No 239
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=31.22 E-value=62 Score=31.03 Aligned_cols=69 Identities=10% Similarity=0.094 Sum_probs=48.3
Q ss_pred EEECCHHHHHHHHHHcCCCceEEEEecCCCC--------CCHHHHHHHHhcc--CCCcEEEEecCCCHHHHHHHHhcCCC
Q 006044 61 TTCSQAAVALDILRERKGCFDVVLSDVHMPD--------MDGFKLLEHIGLE--MDLPVIMMSADGRVSAVMRGIRHGAC 130 (663)
Q Consensus 61 ~tasng~eALelLre~k~~pDLVILDI~MPd--------mDG~ELL~~Ir~~--~~IPVIILSa~~d~e~v~kAl~~GA~ 130 (663)
..+.+.+++.... . ..|.|.++--.|. .-|++.++.+... .++|||.+-+-. .+.+.++++.||+
T Consensus 93 ~s~~t~~e~~~A~--~--GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~ 167 (210)
T 3ceu_A 93 CSCHSVEEVKNRK--H--FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFG 167 (210)
T ss_dssp EEECSHHHHHTTG--G--GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCS
T ss_pred EecCCHHHHHHHh--h--CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCC
Confidence 3677888876553 2 3899987765432 1367888888654 689999876655 6678889999999
Q ss_pred eEEe
Q 006044 131 DYLI 134 (663)
Q Consensus 131 dYLl 134 (663)
+.-.
T Consensus 168 gVav 171 (210)
T 3ceu_A 168 GAVV 171 (210)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8643
No 240
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=31.19 E-value=1.5e+02 Score=29.58 Aligned_cols=41 Identities=17% Similarity=0.160 Sum_probs=33.0
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 95 ~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
.++++++++..++||++=.+-.+.+.+.+++..||+..+.=
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVG 234 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISG 234 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 57888888766889877566666888999899999998763
No 241
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=31.14 E-value=80 Score=34.26 Aligned_cols=96 Identities=14% Similarity=0.202 Sum_probs=61.3
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEE---EE-------------------------CCHHHHHHHHHHcCCCceEEEEecCC
Q 006044 40 DDDITCLRILEQMLRRCLY--NVT---TC-------------------------SQAAVALDILRERKGCFDVVLSDVHM 89 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy--~V~---ta-------------------------sng~eALelLre~k~~pDLVILDI~M 89 (663)
+++...++.+++.++..+| +|. .+ -+..++++.+.+.-.+++++.+.==+
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4566677788888876565 322 12 04577776654322237888887767
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEecCC---CHHHHHHHHhcCCCeE-EeCCCC
Q 006044 90 PDMDGFKLLEHIGLEMDLPVIMMSADG---RVSAVMRGIRHGACDY-LIKPIR 138 (663)
Q Consensus 90 PdmDG~ELL~~Ir~~~~IPVIILSa~~---d~e~v~kAl~~GA~dY-LlKP~s 138 (663)
+..| ++-.++|+....+||+ .... ......++++.|++++ ++|+-.
T Consensus 299 ~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~q 348 (436)
T 2al1_A 299 AEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQ 348 (436)
T ss_dssp CTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHH
T ss_pred CCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhh
Confidence 6655 6667777655666764 4332 4678889999998876 567753
No 242
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=30.98 E-value=1e+02 Score=33.15 Aligned_cols=65 Identities=22% Similarity=0.155 Sum_probs=46.0
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCC-HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 67 ~eALelLre~k~~pDLVILDI~MPdmD-G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+.++.+.+.. +|+|++|.....-. -.+++++++...++|||+=. -...+.+..+.++||+....
T Consensus 146 ~e~~~~lveaG--vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~-V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHHT--CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEee-cCCHHHHHHHHHcCCCEEEE
Confidence 45556655554 99999997654322 26788888766688888622 24577888999999998877
No 243
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=30.95 E-value=91 Score=31.87 Aligned_cols=61 Identities=10% Similarity=0.174 Sum_probs=46.1
Q ss_pred HHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCC
Q 006044 74 RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPI 137 (663)
Q Consensus 74 re~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~ 137 (663)
++.. ||+||.=---|..-|-.-.+.+-...++|.|+++...... ..++++..-.+||+-+.
T Consensus 61 ~~~~--pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~ 121 (283)
T 1qv9_A 61 EDFE--PDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKP 121 (283)
T ss_dssp HHHC--CSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETT
T ss_pred hhcC--CCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEec
Confidence 4555 9998886655667788888887667899999999766555 56888877788876553
No 244
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=30.77 E-value=2.7e+02 Score=28.89 Aligned_cols=108 Identities=10% Similarity=0.049 Sum_probs=64.5
Q ss_pred ccEEEEEeCC-HHHHHHHHHHHHhCCCeEE-EEC-CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006044 33 GLRVLVVDDD-ITCLRILEQMLRRCLYNVT-TCS-QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (663)
Q Consensus 33 giRVLIVDDD-~~~re~L~~lL~~~gy~V~-tas-ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPV 109 (663)
.++++||-+. ...++.++++....+-.|. ... ...+..+.+.. .|++++--. .+.-|+-+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 4566666543 3455666666665443332 222 32232344443 477666433 2334555666653 36788
Q ss_pred EEEecCCCHHHHHHHHhcC---------CCeEEeCCCCHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHG---------ACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~G---------A~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|... ..-..+.+..| ..+++..|-+.++|.+++..++.
T Consensus 394 I~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVRR----TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEES----SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EECC----CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 7642 23455667777 88999999999999999988873
No 245
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=30.61 E-value=3.5e+02 Score=27.14 Aligned_cols=109 Identities=11% Similarity=0.105 Sum_probs=64.2
Q ss_pred CCCccEEEEEeCCHHHHHHHHHHHHhC-CCeEE-EECC-HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCC
Q 006044 30 FPAGLRVLVVDDDITCLRILEQMLRRC-LYNVT-TCSQ-AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD 106 (663)
Q Consensus 30 fP~giRVLIVDDD~~~re~L~~lL~~~-gy~V~-tasn-g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~ 106 (663)
|-.+|||-||--=..-+..+...+... +.++. .|+. .+.|-+..++.. ..-+..|+ -+++ ..++
T Consensus 20 ~~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g--~~~~y~d~-------~ell----~~~~ 86 (350)
T 4had_A 20 FQSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFS--VPHAFGSY-------EEML----ASDV 86 (350)
T ss_dssp --CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHT--CSEEESSH-------HHHH----HCSS
T ss_pred ccCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcC--CCeeeCCH-------HHHh----cCCC
Confidence 456789999988776665555555543 56655 4543 333433333332 22233332 1222 2344
Q ss_pred CcEEEEecCC--CHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006044 107 LPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (663)
Q Consensus 107 IPVIILSa~~--d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~VLr 151 (663)
+-+|+++... -.+.+.+|+++|-.=|+-||+ +.++..++++.+-+
T Consensus 87 iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 87 IDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp CSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred CCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 5455555443 357889999999999999996 67787777765533
No 246
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=29.88 E-value=2e+02 Score=27.75 Aligned_cols=62 Identities=16% Similarity=0.120 Sum_probs=45.2
Q ss_pred ccEEEEEe------CCHHHHHHHHHHHHhCCCeEEEE----CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006044 33 GLRVLVVD------DDITCLRILEQMLRRCLYNVTTC----SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (663)
Q Consensus 33 giRVLIVD------DD~~~re~L~~lL~~~gy~V~ta----sng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir 102 (663)
+-||++|+ |...+.+.+.+.|++.|+++... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 56899996 44567788889999999988777 477777777765 477765 6777666666664
No 247
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=29.65 E-value=85 Score=34.09 Aligned_cols=97 Identities=11% Similarity=0.225 Sum_probs=61.0
Q ss_pred eCCHHHHHHHHHHHHhCCC--eEE---EE------------------------CCHHHHHHHHHHcCCCceEEEEecCCC
Q 006044 40 DDDITCLRILEQMLRRCLY--NVT---TC------------------------SQAAVALDILRERKGCFDVVLSDVHMP 90 (663)
Q Consensus 40 DDD~~~re~L~~lL~~~gy--~V~---ta------------------------sng~eALelLre~k~~pDLVILDI~MP 90 (663)
+++....+.+++.++..+| +|. .+ -+..++++.+.+.-.+++++.+.==++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4566777888888875555 222 11 145776666543222378888877776
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecC---CCHHHHHHHHhcCCCeE-EeCCCCH
Q 006044 91 DMDGFKLLEHIGLEMDLPVIMMSAD---GRVSAVMRGIRHGACDY-LIKPIRE 139 (663)
Q Consensus 91 dmDG~ELL~~Ir~~~~IPVIILSa~---~d~e~v~kAl~~GA~dY-LlKP~s~ 139 (663)
..| ++-.++|+....+||+ ... .......++++.|++++ ++|+-..
T Consensus 297 ~dD-~~g~~~L~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qi 346 (439)
T 2akz_A 297 QDD-WAAWSKFTANVGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQI 346 (439)
T ss_dssp TTC-HHHHHHHHHTCSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHH
T ss_pred ccc-HHHHHHHHhCCCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhc
Confidence 555 5666677655566764 333 25688889999998776 5677533
No 248
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=29.57 E-value=1.1e+02 Score=30.28 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 94 GFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.++++++++...++||++-.+-.+.+.+.+++.+||+.++.
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvV 229 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVII 229 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 55678888766789999988888899999999999999886
No 249
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=29.49 E-value=4e+02 Score=26.23 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=59.2
Q ss_pred HHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHH
Q 006044 49 LEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRG 124 (663)
Q Consensus 49 L~~lL~~~gy--~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir--~~~~IPVIILSa~~d~e~v~kA 124 (663)
+++.|..... .+....+..+.++.+... .+|.|++|..=.-.+--++...++ .....++++=+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~~--gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGLA--GFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTTS--CCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 5555654322 222333445555666544 499999998544223223333333 2245678887777788888999
Q ss_pred HhcCCCeEE-eCCCCHHHHHHHHHH
Q 006044 125 IRHGACDYL-IKPIREEELKNIWQH 148 (663)
Q Consensus 125 l~~GA~dYL-lKP~s~eeLk~~Iq~ 148 (663)
++.|+++.+ .|--+.++++.+++.
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~~ 112 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVAS 112 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHHT
T ss_pred HhcCCceeeecCcCCHHHHHHHHHH
Confidence 999998743 344578888665543
No 250
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=29.06 E-value=31 Score=35.51 Aligned_cols=93 Identities=23% Similarity=0.293 Sum_probs=60.3
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCC-CcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMD-LPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~-IPVII 111 (663)
.|||.|+-....-.+.+.++|++.+++|.......+.+ ..+|+||. -+.||- +++..+...+ +||+-
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv----lGGDGT-~L~aa~~~~~~~PilG 96 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS----VGGDGT-ILRILQKLKRCPPIFG 96 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE----EECHHH-HHHHHTTCSSCCCEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE----ECCCHH-HHHHHHHhCCCCcEEE
Confidence 47888884321116778888988899887655432222 13798886 266773 4455543222 89998
Q ss_pred EecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 112 MSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 112 LSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
+.. |-.+||. ++..+++..++++++.
T Consensus 97 IN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 97 INT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred ECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 764 5566777 5777888888888876
No 251
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=28.99 E-value=1.7e+02 Score=30.24 Aligned_cols=66 Identities=8% Similarity=-0.018 Sum_probs=44.8
Q ss_pred EEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeE
Q 006044 60 VTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 60 V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dY 132 (663)
...+.+.+|+.+.++. ..|+|.+|-.-| -++-+.++....-..|..|+--+.+.+.+..+.|++.+
T Consensus 202 eVEv~tl~ea~eAl~a---GaD~I~LDn~~~----~~l~~av~~~~~~v~ieaSGGIt~~~i~~~a~tGVD~I 267 (287)
T 3tqv_A 202 EVEVTNLDELNQAIAA---KADIVMLDNFSG----EDIDIAVSIARGKVALEVSGNIDRNSIVAIAKTGVDFI 267 (287)
T ss_dssp EEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTTCEEEEESSCCTTTHHHHHTTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEEcCCCH----HHHHHHHHhhcCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 3489999999988875 389999996333 22222233222234566888888888888888998754
No 252
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=28.93 E-value=50 Score=33.06 Aligned_cols=58 Identities=14% Similarity=0.190 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEecCCC--CCCHHHHHHHHhccCCCcEEEEecC-CCHHHHHHHHhcCCCeEEe
Q 006044 67 AVALDILRERKGCFDVVLSDVHMP--DMDGFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 67 ~eALelLre~k~~pDLVILDI~MP--dmDG~ELL~~Ir~~~~IPVIILSa~-~d~e~v~kAl~~GA~dYLl 134 (663)
.++++.+.+.. .|+|.+-+.-. -.+-+++++++|+ .++|+|+++.. +.. ..|++++|.
T Consensus 23 ~~~~~~l~~~G--aD~IelG~S~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n~i-------~~gvDg~ii 83 (234)
T 2f6u_A 23 DEIIKAVADSG--TDAVMISGTQNVTYEKARTLIEKVSQ-YGLPIVVEPSDPSNV-------VYDVDYLFV 83 (234)
T ss_dssp HHHHHHHHTTT--CSEEEECCCTTCCHHHHHHHHHHHTT-SCCCEEECCSSCCCC-------CCCSSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECCCCCCCHHHHHHHHHHhcC-CCCCEEEecCCcchh-------hcCCCEEEE
No 253
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=28.74 E-value=85 Score=32.62 Aligned_cols=59 Identities=15% Similarity=0.131 Sum_probs=43.0
Q ss_pred HHHHHHHHhccCCCcEEEEec--CCCHHHHHHHHhcCCCeEEe-----CCCCHHHHHHHHHHHHHH
Q 006044 94 GFKLLEHIGLEMDLPVIMMSA--DGRVSAVMRGIRHGACDYLI-----KPIREEELKNIWQHVVRK 152 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa--~~d~e~v~kAl~~GA~dYLl-----KP~s~eeLk~~Iq~VLrk 152 (663)
.+++++++++..++|||++.. -...+.+.++++.|+++.++ +--++......+..++..
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~ 251 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTH 251 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHh
Confidence 378888887778899998733 34688899999999999865 334566666666665543
No 254
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=28.63 E-value=2.9e+02 Score=24.35 Aligned_cols=68 Identities=19% Similarity=0.256 Sum_probs=45.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy--~V-~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
.+|..||-++...+..+..+...+. .+ ....+..+.+..+......+|+|++|.-.-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999999998888876553 23 35667776655443223459999998532233445566655
No 255
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=28.63 E-value=3e+02 Score=24.08 Aligned_cols=76 Identities=24% Similarity=0.241 Sum_probs=48.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHc--CCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~--k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
.|||.++-|.. ...+ ++-.|.++..+++.+++.+.+++. ..++.+|+++=++-+ .--+.+.+++.....|+|
T Consensus 3 ~mkiaVIgD~d-tv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~-~i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIADPE-TAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLP-DPERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEECHH-HHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCS-CHHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeCHH-HHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHH-hhHHHHHHHHhCCCCeEE
Confidence 46889998833 2222 233477888888888776666532 225889999887765 333455666545668887
Q ss_pred EEec
Q 006044 111 MMSA 114 (663)
Q Consensus 111 ILSa 114 (663)
+.-.
T Consensus 77 l~IP 80 (109)
T 2d00_A 77 LPIA 80 (109)
T ss_dssp EEES
T ss_pred EEEC
Confidence 7543
No 256
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=28.16 E-value=70 Score=34.11 Aligned_cols=101 Identities=20% Similarity=0.191 Sum_probs=62.3
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCeEEEECCHHHHHHHHH-------------------HcCCCceEEEEecCCC
Q 006044 35 RVLVVD--DDITC---LRILEQMLRRCLYNVTTCSQAAVALDILR-------------------ERKGCFDVVLSDVHMP 90 (663)
Q Consensus 35 RVLIVD--DD~~~---re~L~~lL~~~gy~V~tasng~eALelLr-------------------e~k~~pDLVILDI~MP 90 (663)
+|+||- +++.. ...|.++|...++.|..-....+.+.... +....+|+||+ -
T Consensus 40 ~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~----l 115 (365)
T 3pfn_A 40 SVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC----L 115 (365)
T ss_dssp EEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE----E
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE----E
Confidence 688884 33333 44556666667888876544444332221 01124677776 2
Q ss_pred CCCHHHHHHHHh--ccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHhh
Q 006044 91 DMDGFKLLEHIG--LEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRKRW 154 (663)
Q Consensus 91 dmDG~ELL~~Ir--~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrkk~ 154 (663)
+.||- +|+..+ ....+||+-+. .|-.+||. +++.+++..++++++++.+
T Consensus 116 GGDGT-~L~aa~~~~~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~~ 166 (365)
T 3pfn_A 116 GGDGT-LLYASSLFQGSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGNA 166 (365)
T ss_dssp SSTTH-HHHHHHHCSSSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSCC
T ss_pred cChHH-HHHHHHHhccCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCCC
Confidence 67873 333333 23568888765 36677888 8888999999999987654
No 257
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=27.91 E-value=91 Score=31.33 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=55.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCC----CCC-CHHHHHHHHhccC-CCcEEE-EecCCCHHHHHHHHhcCCCeEEeCCC
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHM----PDM-DGFKLLEHIGLEM-DLPVIM-MSADGRVSAVMRGIRHGACDYLIKPI 137 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~M----Pdm-DG~ELL~~Ir~~~-~IPVII-LSa~~d~e~v~kAl~~GA~dYLlKP~ 137 (663)
+-.++++.+.+.. .|.+=+|++- |.. =|.++++.||... +.|+.+ +-..+-..++..+.++||+....-..
T Consensus 41 ~L~~~i~~l~~~G--~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLAAG--ADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHHTT--CCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHHcC--CCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 4567778777653 6666666632 333 3889999998654 788755 44455566788889999987666554
Q ss_pred CHHHHHHHHHHH
Q 006044 138 REEELKNIWQHV 149 (663)
Q Consensus 138 s~eeLk~~Iq~V 149 (663)
..+++.+.++.+
T Consensus 119 a~~~~~~~i~~i 130 (246)
T 3inp_A 119 ASEHIDRSLQLI 130 (246)
T ss_dssp GCSCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 444566666654
No 258
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=27.66 E-value=5e+02 Score=26.55 Aligned_cols=87 Identities=18% Similarity=0.036 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCeEE--EE---CCHHHHHHHHHHcCCCceEEEEecC---------------------CCCCCHHHHH
Q 006044 45 CLRILEQMLRRCLYNVT--TC---SQAAVALDILRERKGCFDVVLSDVH---------------------MPDMDGFKLL 98 (663)
Q Consensus 45 ~re~L~~lL~~~gy~V~--ta---sng~eALelLre~k~~pDLVILDI~---------------------MPdmDG~ELL 98 (663)
..+.++.+-+.....|. .+ .+.++|..+.+ .. .|.|++.-+ ..+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~-~G--ad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYE-AG--AAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHH-HT--CSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHH-cC--CCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 34555555444444333 23 45666655443 33 787777422 1134567777
Q ss_pred HHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 99 EHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 99 ~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
..++.. .++|||.-.+-.+.+.+.+++..||+...+
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~i 279 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGM 279 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 777543 489999999989999999999999998755
No 259
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=27.49 E-value=1.7e+02 Score=23.80 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=34.8
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCC-CeEEEECCHHHHHHHHHHcCCCceEEEEecC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCL-YNVTTCSQAAVALDILRERKGCFDVVLSDVH 88 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~g-y~V~tasng~eALelLre~k~~pDLVILDI~ 88 (663)
.+++|+|+-- -.+-..+...|...+ +.|..+....+.++.+... ....+..|+.
T Consensus 4 ~~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~--~~~~~~~d~~ 58 (118)
T 3ic5_A 4 MRWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRM--GVATKQVDAK 58 (118)
T ss_dssp TCEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTT--TCEEEECCTT
T ss_pred CcCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhC--CCcEEEecCC
Confidence 3578999988 555555666666667 8887666555555655532 3566666654
No 260
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=27.15 E-value=2.2e+02 Score=27.48 Aligned_cols=96 Identities=14% Similarity=0.104 Sum_probs=61.0
Q ss_pred HHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEecCC----C-CCCHHHHHHHHh---ccCCCcEEEEecCCCHH
Q 006044 50 EQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVHM----P-DMDGFKLLEHIG---LEMDLPVIMMSADGRVS 119 (663)
Q Consensus 50 ~~lL~~~gy~V~--tasng~eALelLre~k~~pDLVILDI~M----P-dmDG~ELL~~Ir---~~~~IPVIILSa~~d~e 119 (663)
-+.|+..|+.+. -+..+...+..+...+ +|.|=+|-.+ . +.....+++.+. ...++.|| ..+-.+.+
T Consensus 145 l~~l~~~G~~ialDdfG~g~ssl~~L~~l~--~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGVEt~~ 221 (259)
T 3s83_A 145 LKTLRDAGAGLALDDFGTGFSSLSYLTRLP--FDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVENAE 221 (259)
T ss_dssp HHHHHHHTCEEEEECC---CHHHHHHHHSC--CCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCCCSHH
T ss_pred HHHHHHCCCEEEEECCCCCchhHHHHHhCC--CCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeCCCHH
Confidence 344556688765 4566777888888765 9999999633 1 112334455442 33555555 45566677
Q ss_pred HHHHHHhcCCCe----EEeCCCCHHHHHHHHHH
Q 006044 120 AVMRGIRHGACD----YLIKPIREEELKNIWQH 148 (663)
Q Consensus 120 ~v~kAl~~GA~d----YLlKP~s~eeLk~~Iq~ 148 (663)
....+.+.|++. |+.||...+++...++.
T Consensus 222 ~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 222 MAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 777778888864 47799999998776543
No 261
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=27.04 E-value=1.6e+02 Score=30.25 Aligned_cols=93 Identities=10% Similarity=-0.010 Sum_probs=55.7
Q ss_pred EEEEeCCHHHH----HHHHHHHHhCC--CeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc-cCCCc
Q 006044 36 VLVVDDDITCL----RILEQMLRRCL--YNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL-EMDLP 108 (663)
Q Consensus 36 VLIVDDD~~~r----e~L~~lL~~~g--y~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~-~~~IP 108 (663)
+||-|++.... +.++..-+... .....+.+.+++.+.++. ..|+|.+|-.-|+ +--+..+.++. .++ .
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~-~~~~~v~~l~~~~~~-v 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVW-QTQTAVQRRDSRAPT-V 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHH-HHHHHHHHHHHHCTT-C
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhhccCCC-e
Confidence 67766654332 23333322233 234578888888888764 3799999974331 11223333432 223 3
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
.|..|+--+.+.+.+..+.|++.+.
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 5667887788888888899987654
No 262
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=26.92 E-value=1.4e+02 Score=29.10 Aligned_cols=57 Identities=7% Similarity=0.071 Sum_probs=36.1
Q ss_pred HHHHHHHHHcC--CCceEEEEecCC-----CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHH
Q 006044 67 AVALDILRERK--GCFDVVLSDVHM-----PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMR 123 (663)
Q Consensus 67 ~eALelLre~k--~~pDLVILDI~M-----PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~k 123 (663)
..+++.+++.- ..+||||+|=-. .-.+--++++.|...+.-.-||+|+...++...+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 44555555432 469999999531 2234556778887666656677788777665554
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=26.70 E-value=90 Score=31.72 Aligned_cols=59 Identities=10% Similarity=0.086 Sum_probs=30.8
Q ss_pred CccEEEEEeCCHH---HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCC
Q 006044 32 AGLRVLVVDDDIT---CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMD 93 (663)
Q Consensus 32 ~giRVLIVDDD~~---~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmD 93 (663)
.|.+|+++|.|+. ..+.+..+.+..+..+....+..+.-..+... ..+|+||+| .++.+
T Consensus 133 ~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~ 194 (296)
T 2px0_A 133 KHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRN 194 (296)
T ss_dssp TCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCC
T ss_pred cCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCC
Confidence 4668999888762 22333333333333332334444433333332 359999999 45544
No 264
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=26.63 E-value=1.5e+02 Score=29.97 Aligned_cols=105 Identities=12% Similarity=0.114 Sum_probs=59.5
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVI 110 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVI 110 (663)
.++||.||--=..-...+..+.+..++++. .+....+..+.+.+.. ... +..| .+.+-...++-+|
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~-g~~-~~~~-----------~~~~l~~~~~D~V 69 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEAN-GAE-AVAS-----------PDEVFARDDIDGI 69 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTT-TCE-EESS-----------HHHHTTCSCCCEE
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc-CCc-eeCC-----------HHHHhcCCCCCEE
Confidence 357888888766555555554444466655 4554444444443321 111 1111 1222222344455
Q ss_pred EEecC--CCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHH
Q 006044 111 MMSAD--GRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (663)
Q Consensus 111 ILSa~--~d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~V 149 (663)
+++.. ...+.+..++++|..=++-||+ +.++..++++.+
T Consensus 70 ~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a 112 (344)
T 3euw_A 70 VIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKI 112 (344)
T ss_dssp EECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHH
T ss_pred EEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHH
Confidence 54443 3457788899999999999995 567777766554
No 265
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=26.52 E-value=1.1e+02 Score=30.17 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=50.8
Q ss_pred HHHhCCCeEEEECCH---HHHHHHHHHcCCCceEEEEecCCCCCCH-------HHHHHHHhccC-CCcEEEEecCCCHHH
Q 006044 52 MLRRCLYNVTTCSQA---AVALDILRERKGCFDVVLSDVHMPDMDG-------FKLLEHIGLEM-DLPVIMMSADGRVSA 120 (663)
Q Consensus 52 lL~~~gy~V~tasng---~eALelLre~k~~pDLVILDI~MPdmDG-------~ELL~~Ir~~~-~IPVIILSa~~d~e~ 120 (663)
.+++.|..+..+-+. .+.++.+... ..+|+|++=---|+.+| ++-++++++.. +++ |.+.+--+.+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~-I~VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLN-IQVDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCE-EEEESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCe-EEEECCCCHHH
Confidence 666778777655433 3444444331 03788876554565443 55566665433 443 55677777889
Q ss_pred HHHHHhcCCCeEEe
Q 006044 121 VMRGIRHGACDYLI 134 (663)
Q Consensus 121 v~kAl~~GA~dYLl 134 (663)
+.++.++||+-++.
T Consensus 187 i~~~~~aGAd~~V~ 200 (227)
T 1tqx_A 187 TEISASHGANIIVA 200 (227)
T ss_dssp HHHHHHHTCCEEEE
T ss_pred HHHHHHcCCCEEEE
Confidence 99999999998765
No 266
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=26.47 E-value=2.6e+02 Score=28.91 Aligned_cols=90 Identities=12% Similarity=0.138 Sum_probs=57.1
Q ss_pred CeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCC-CHHHHHHHHhccCCCcEEEEecCCCH-------------HHHH
Q 006044 58 YNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDM-DGFKLLEHIGLEMDLPVIMMSADGRV-------------SAVM 122 (663)
Q Consensus 58 y~V~-tasng~eALelLre~k~~pDLVILDI~MPdm-DG~ELL~~Ir~~~~IPVIILSa~~d~-------------e~v~ 122 (663)
+.+. .+.+.++++...+.-.+...|. .++..++. -++.+++.+++..++||.+|--...- +.+.
T Consensus 40 ~~lEvc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~ 118 (287)
T 3iwp_A 40 FLMEVCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIR 118 (287)
T ss_dssp SEEEEEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHH
Confidence 3343 5778888888777654333333 22223333 37889999987778999877644332 4677
Q ss_pred HHHhcCCCeEEeC---C---CCHHHHHHHHHH
Q 006044 123 RGIRHGACDYLIK---P---IREEELKNIWQH 148 (663)
Q Consensus 123 kAl~~GA~dYLlK---P---~s~eeLk~~Iq~ 148 (663)
.+.++||++++.= | ++.+.++.++..
T Consensus 119 ~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 119 LAKLYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 7889999998765 3 455566665553
No 267
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=26.19 E-value=4.8e+02 Score=25.93 Aligned_cols=103 Identities=12% Similarity=0.136 Sum_probs=55.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIIL 112 (663)
+||.||--=..-...+..+....++++. .+..-.+..+.+.+.. ...-+..| --+++ ..++-+|++
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~~-~~~~~~~~-------~~~~l-----~~~~D~V~i 68 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRY-QNIQLFDQ-------LEVFF-----KSSFDLVYI 68 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGGS-SSCEEESC-------HHHHH-----TSSCSEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc-CCCeEeCC-------HHHHh-----CCCCCEEEE
Confidence 5777777655555444444433355553 4444333333333321 11112212 11222 233445555
Q ss_pred ecCC--CHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHH
Q 006044 113 SADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (663)
Q Consensus 113 Sa~~--d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~V 149 (663)
+... -.+.+.+++++|..=|+-||+ +.++..++++.+
T Consensus 69 ~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a 109 (325)
T 2ho3_A 69 ASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTA 109 (325)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHH
Confidence 4433 357788899999988999997 677777766654
No 268
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=26.10 E-value=2.5e+02 Score=25.84 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=46.3
Q ss_pred CCCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006044 28 DQFPAGLRVLVVDDDITCLRILEQMLRRCLY--NVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (663)
Q Consensus 28 d~fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir 102 (663)
..+|.+.+|..||-++...+..++.+...+. .|. ...+..+.+. .... +|+|++|.. ..+-.++++.+.
T Consensus 76 ~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~---~~~~-fD~v~~~~~--~~~~~~~l~~~~ 147 (210)
T 3c3p_A 76 RAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAA---GQRD-IDILFMDCD--VFNGADVLERMN 147 (210)
T ss_dssp TTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHT---TCCS-EEEEEEETT--TSCHHHHHHHHG
T ss_pred HhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhc---cCCC-CCEEEEcCC--hhhhHHHHHHHH
Confidence 3445567999999999999999888876553 243 4556655433 2234 999999954 334456676664
No 269
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=25.88 E-value=1.1e+02 Score=31.77 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=46.2
Q ss_pred ceEEEEecCCCCCCHHHHHHHHhccC--CCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 80 FDVVLSDVHMPDMDGFKLLEHIGLEM--DLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 80 pDLVILDI~MPdmDG~ELL~~Ir~~~--~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
.+||.+|+.- .....++++++++.. .+||++=-+-.+.+.+.+++++||+..++=-
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 5899999855 334568999998665 8999988788899999999999999988765
No 270
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=25.65 E-value=2.3e+02 Score=24.57 Aligned_cols=107 Identities=13% Similarity=0.163 Sum_probs=65.2
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEE-ECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCC-cE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTT-CSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDL-PV 109 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~t-asng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~I-PV 109 (663)
..++++|+.+.+. .+.+++++...+..|.. .-+..+..+.+.. .|++++-.. .+.-|..+++.+. ..+ ||
T Consensus 31 ~~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~G~vPv 102 (166)
T 3qhp_A 31 QDIVLLLKGKGPD-EKKIKLLAQKLGVKAEFGFVNSNELLEILKT----CTLYVHAAN-VESEAIACLEAIS--VGIVPV 102 (166)
T ss_dssp GGEEEEEECCSTT-HHHHHHHHHHHTCEEECCCCCHHHHHHHHTT----CSEEEECCC-SCCCCHHHHHHHH--TTCCEE
T ss_pred CCeEEEEEeCCcc-HHHHHHHHHHcCCeEEEeecCHHHHHHHHHh----CCEEEECCc-ccCccHHHHHHHh--cCCCcE
Confidence 3578888876543 46677777766555443 2224555555532 688887544 3445677777764 465 88
Q ss_pred EEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 110 IMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 110 IILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
|..+...... +.+..+. ++..|-+.++|.+.+.+++.
T Consensus 103 i~~~~~~~~~---~~~~~~~--~~~~~~~~~~l~~~i~~l~~ 139 (166)
T 3qhp_A 103 IANSPLSATR---QFALDER--SLFEPNNAKDLSAKIDWWLE 139 (166)
T ss_dssp EECCTTCGGG---GGCSSGG--GEECTTCHHHHHHHHHHHHH
T ss_pred EeeCCCCchh---hhccCCc--eEEcCCCHHHHHHHHHHHHh
Confidence 8733222221 2223332 37888999999999998875
No 271
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=25.64 E-value=2e+02 Score=26.63 Aligned_cols=115 Identities=21% Similarity=0.279 Sum_probs=64.5
Q ss_pred CCCccEEEEEeCCH-----H-HHHHHHHHHHhCCCeEEE---E---------C---C----HHHHHHHHHHcCCCceEEE
Q 006044 30 FPAGLRVLVVDDDI-----T-CLRILEQMLRRCLYNVTT---C---------S---Q----AAVALDILRERKGCFDVVL 84 (663)
Q Consensus 30 fP~giRVLIVDDD~-----~-~re~L~~lL~~~gy~V~t---a---------s---n----g~eALelLre~k~~pDLVI 84 (663)
.+.+++|.|.-... . .++.+++.|+..+ .|.. + . + ...-++.+++ .|+||
T Consensus 8 ~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~~----aD~vv 82 (165)
T 2khz_A 8 EQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQQ----ADVVV 82 (165)
T ss_dssp SCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHHH----CSEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHHh----CCEEE
Confidence 46677888883222 2 4577888888777 6621 0 0 1 1122244443 69999
Q ss_pred EecCCCC-CCHHHHHHHHhccCCCcEEEEecCCC---HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 85 SDVHMPD-MDGFKLLEHIGLEMDLPVIMMSADGR---VSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 85 LDI~MPd-mDG~ELL~~Ir~~~~IPVIILSa~~d---~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.++.-++ ..++|+--.. ....|||++....+ ...+..+...+ ..|-.+.++.++|...+...++.
T Consensus 83 a~~~~~d~Gt~~EiGyA~--algKPVi~l~~~~~~~~~n~M~~g~~~~-~~~~~~~y~~~el~~~l~~~~~~ 151 (165)
T 2khz_A 83 AEVTQPSLGVGYELGRAV--ALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEA 151 (165)
T ss_dssp EECSSCCHHHHHHHHHHH--HTCSSEEEEECTTTTCCCCHHHHHTCCS-SSEEEEECCTTTHHHHHHHHHHT
T ss_pred EECCCCCCCHHHHHHHHH--HCCCEEEEEEcCCCCCcchhhhcccCcc-ceeEEEecCHHHHHHHHHHHHHh
Confidence 9886222 1245554433 35789999876552 22232222221 23444445888999888887764
No 272
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=25.63 E-value=2.6e+02 Score=26.59 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhCCCeEEEECCH---H---HHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006044 45 CLRILEQMLRRCLYNVTTCSQA---A---VALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (663)
Q Consensus 45 ~re~L~~lL~~~gy~V~tasng---~---eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~ 115 (663)
+...+++.+.+.+|.+..+... . +.++.+.... +|-||+--..+ -+.++.+. ...+|+|++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~~ 94 (276)
T 3jy6_A 25 LFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSRG--FDGLILQSFSN----PQTVQEIL-HQQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTTT--CSEEEEESSCC----HHHHHHHH-TTSSCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhCC--CCEEEEecCCc----HHHHHHHH-HCCCCEEEEecc
Confidence 4556666777789988765432 2 3455555444 89888754332 55666664 358999988654
No 273
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=25.56 E-value=3e+02 Score=29.29 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=39.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------eE-EEECCHHHHHHHHHHcCCCceEEEEecCC
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCL---Y------NV-TTCSQAAVALDILRERKGCFDVVLSDVHM 89 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~g---y------~V-~tasng~eALelLre~k~~pDLVILDI~M 89 (663)
-+|.+||=|+...+..++.+.... + .+ ....++.+.++.+.+....||+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999999998875311 1 23 35778888777653223459999999854
No 274
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=25.37 E-value=90 Score=31.27 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCC------HHHHHHHHhccCCCcEEEEecC-CCHHHHHHHHhcCCCeEEe
Q 006044 67 AVALDILRERKGCFDVVLSDVHMPDMD------GFKLLEHIGLEMDLPVIMMSAD-GRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 67 ~eALelLre~k~~pDLVILDI~MPdmD------G~ELL~~Ir~~~~IPVIILSa~-~d~e~v~kAl~~GA~dYLl 134 (663)
.++++.+.+.. .|+|.+-+ -+ .+++++++|+ .++|+|+++.. ... ..|++.||+
T Consensus 23 ~~~~~~l~~~G--aD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i-------~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCESG--TDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAI-------VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTSC--CSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC-------CSCCSEEEE
T ss_pred HHHHHHHHHcC--CCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccc-------cCCCCEEEE
No 275
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=25.04 E-value=4.7e+02 Score=27.20 Aligned_cols=43 Identities=23% Similarity=0.334 Sum_probs=29.1
Q ss_pred cCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 104 ~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
...+|+|++-...+.. +.++.| ..++..+ +.++|.+.+..++.
T Consensus 318 a~g~PvV~~~~~~~~~---e~v~~g-~~~lv~~-d~~~l~~ai~~ll~ 360 (403)
T 3ot5_A 318 GMGVPVLVLRDTTERP---EGIEAG-TLKLIGT-NKENLIKEALDLLD 360 (403)
T ss_dssp GTTCCEEECCSSCSCH---HHHHHT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred HhCCCEEEecCCCcch---hheeCC-cEEEcCC-CHHHHHHHHHHHHc
Confidence 3578998763222222 245677 5677766 89999999988875
No 276
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=24.60 E-value=99 Score=33.55 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=46.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC-C--CHHHHHHHHhcCCCeE-EeCCCC
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD-G--RVSAVMRGIRHGACDY-LIKPIR 138 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~-~--d~e~v~kAl~~GA~dY-LlKP~s 138 (663)
+..+|++++++.-.+++++.+.==++..| ++-+++|+.....||-++... . ......++++.|++++ .+|+-.
T Consensus 264 t~~eai~~~~~ll~~y~i~~IEdPl~~dD-~eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~ 340 (428)
T 3tqp_A 264 TSEEMIDRLTEWTKKYPVISIEDGLSEND-WAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQ 340 (428)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHH
T ss_pred CHHHHHHHHHHHHhhcccceEeCCCCccc-HHHHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEecccc
Confidence 56888887775212478888876666544 455566654444455443332 1 5677888999988775 566643
No 277
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=24.55 E-value=50 Score=31.81 Aligned_cols=84 Identities=8% Similarity=-0.026 Sum_probs=44.2
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHhcc-CCCcEEEEec-CCC-HHHHHHHHhcCCCeEEeCCCC
Q 006044 64 SQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIGLE-MDLPVIMMSA-DGR-VSAVMRGIRHGACDYLIKPIR 138 (663)
Q Consensus 64 sng~eALelLre~k~~pDLVILDI~MPd--mDG~ELL~~Ir~~-~~IPVIILSa-~~d-~e~v~kAl~~GA~dYLlKP~s 138 (663)
.+.+++++.++... ..+-++++.+|- ..|+++++.||+. ++.|+++..- .+. ...+..+.++||+....-...
T Consensus 16 ~~~~~~~~~~~~~~--~~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~ 93 (218)
T 3jr2_A 16 TNLTDAVAVASNVA--SYVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAA 93 (218)
T ss_dssp SSHHHHHHHHHHHG--GGCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTS
T ss_pred CCHHHHHHHHHHhc--CCceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCC
Confidence 34455555555432 123345555432 2467788888765 4666654221 122 234667788999766554444
Q ss_pred HH-HHHHHHHHH
Q 006044 139 EE-ELKNIWQHV 149 (663)
Q Consensus 139 ~e-eLk~~Iq~V 149 (663)
.+ .+.++++.+
T Consensus 94 ~~~~~~~~~~~~ 105 (218)
T 3jr2_A 94 HIATIAACKKVA 105 (218)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 33 345555443
No 278
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=24.34 E-value=1.9e+02 Score=27.44 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=45.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHH-HHHHcCCCceEEEEecCCCCCCHHHHHHHHh
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHIG 102 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy--~V-~tasng~eALe-lLre~k~~pDLVILDI~MPdmDG~ELL~~Ir 102 (663)
+.+|..||-++...+..++.+...+. .| ....++.+.+. .+ ...||+|++|...+. -.++++.+.
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~~~--~~~~l~~~~ 163 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---DKVYDMIFIDAAKAQ--SKKFFEIYT 163 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---TSCEEEEEEETTSSS--HHHHHHHHG
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---cCCccEEEEcCcHHH--HHHHHHHHH
Confidence 56899999999999999999987763 34 35566655544 33 235999999965433 345666653
No 279
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=24.34 E-value=1.5e+02 Score=31.68 Aligned_cols=93 Identities=18% Similarity=0.207 Sum_probs=54.7
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH--HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHh-ccCCCc
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA--AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIG-LEMDLP 108 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng--~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir-~~~~IP 108 (663)
.++.|++||.++...+.++ ..++.+.. .++ .+.|+.+.- ...|+||+-+.-+ ..-+.++..++ ..++++
T Consensus 26 ~g~~vvvId~d~~~v~~~~----~~g~~vi~-GDat~~~~L~~agi--~~A~~viv~~~~~-~~n~~i~~~ar~~~p~~~ 97 (413)
T 3l9w_A 26 SGVKMVVLDHDPDHIETLR----KFGMKVFY-GDATRMDLLESAGA--AKAEVLINAIDDP-QTNLQLTEMVKEHFPHLQ 97 (413)
T ss_dssp TTCCEEEEECCHHHHHHHH----HTTCCCEE-SCTTCHHHHHHTTT--TTCSEEEECCSSH-HHHHHHHHHHHHHCTTCE
T ss_pred CCCCEEEEECCHHHHHHHH----hCCCeEEE-cCCCCHHHHHhcCC--CccCEEEECCCCh-HHHHHHHHHHHHhCCCCe
Confidence 3567999999987665544 34665542 222 233443322 2478888866321 12333444454 346777
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
||+.+. +.+......++||+..+.
T Consensus 98 Iiara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 98 IIARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEEEES--SHHHHHHHHHTTCSSCEE
T ss_pred EEEEEC--CHHHHHHHHHCCCCEEEC
Confidence 877664 455667778899987664
No 280
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=24.26 E-value=73 Score=30.84 Aligned_cols=81 Identities=11% Similarity=0.030 Sum_probs=47.6
Q ss_pred HHhCCCeEEE-E--CCHHHHHHHHHHcCCCceEEEEecCCCCC-------CHHHHHHHHhccC-CCcEEEEecCCCHHHH
Q 006044 53 LRRCLYNVTT-C--SQAAVALDILRERKGCFDVVLSDVHMPDM-------DGFKLLEHIGLEM-DLPVIMMSADGRVSAV 121 (663)
Q Consensus 53 L~~~gy~V~t-a--sng~eALelLre~k~~pDLVILDI~MPdm-------DG~ELL~~Ir~~~-~IPVIILSa~~d~e~v 121 (663)
++..+..+.. + .+..+.++.+.......|.|+++-..|+. .+++.++++++.. ++||++.-+- ..+.+
T Consensus 109 i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI-~~~ni 187 (228)
T 1h1y_A 109 IKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGL-GPSTI 187 (228)
T ss_dssp HHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSC-STTTH
T ss_pred HHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCc-CHHHH
Confidence 3344554442 3 23334555444410027999998777753 3466667776544 7787655443 34667
Q ss_pred HHHHhcCCCeEEe
Q 006044 122 MRGIRHGACDYLI 134 (663)
Q Consensus 122 ~kAl~~GA~dYLl 134 (663)
.++++.||+.++.
T Consensus 188 ~~~~~aGaD~vvv 200 (228)
T 1h1y_A 188 DVAASAGANCIVA 200 (228)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 7888889998765
No 281
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=24.06 E-value=5.6e+02 Score=25.73 Aligned_cols=106 Identities=22% Similarity=0.263 Sum_probs=61.7
Q ss_pred ccEEEEEeCC----HHHHHHHHHHHHhCC--CeEEEEC-----CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHH
Q 006044 33 GLRVLVVDDD----ITCLRILEQMLRRCL--YNVTTCS-----QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 33 giRVLIVDDD----~~~re~L~~lL~~~g--y~V~tas-----ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
.++++|+-+. +...+.++++.+..+ -.|.... +.++..+.+.. .|++++--. .+.-|.-+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~-~E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSI-REGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCS-SCSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCC-cCCCccHHHHHH
Confidence 3567777664 334444555544432 2333322 12344445443 477666433 233456666666
Q ss_pred hccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 102 GLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 102 r~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
. ..+|||..- .....+.+..|..+++.. +.++|.+++..++.
T Consensus 337 a--~G~PvI~~~----~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W--KGKPVIGRA----VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H--TTCCEEEES----CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H--cCCCEEEcc----CCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 3 467887632 234556677788999996 89999999988764
No 282
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=24.01 E-value=53 Score=33.28 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=37.5
Q ss_pred HHHHHHHHhccCCCcEEEEecC------CCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Q 006044 94 GFKLLEHIGLEMDLPVIMMSAD------GRVSAVMRGIRHGACDYLIKPIREEELKNIWQHVVRK 152 (663)
Q Consensus 94 G~ELL~~Ir~~~~IPVIILSa~------~d~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLrk 152 (663)
.|++++++|.. +|+|+|+=+ .-.....+|.++|+++.|+--+..+|... +...+++
T Consensus 78 ~~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~-~~~~~~~ 139 (252)
T 3tha_A 78 VFELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDD-LIKECER 139 (252)
T ss_dssp HHHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHH-HHHHHHH
T ss_pred HHHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHH-HHHHHHH
Confidence 34555555533 899998743 34456788889999999998787777443 4444433
No 283
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=23.78 E-value=3.4e+02 Score=28.52 Aligned_cols=65 Identities=22% Similarity=0.180 Sum_probs=44.0
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCCH-HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 67 AVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 67 ~eALelLre~k~~pDLVILDI~MPdmDG-~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+.++.+.+.. +|+|.+|..-.+... ++.++++++..++|||+=. -...+.+..+.++||+...+
T Consensus 107 ~e~a~~l~eaG--ad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEAG--VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHTT--CSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHcC--cCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 45555555543 899998876533322 4677777765588888622 24677888999999987765
No 284
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=23.62 E-value=58 Score=32.74 Aligned_cols=59 Identities=15% Similarity=0.188 Sum_probs=40.2
Q ss_pred HHHHHHHHcCCCceEEEEecCC--CCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeC
Q 006044 68 VALDILRERKGCFDVVLSDVHM--PDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIK 135 (663)
Q Consensus 68 eALelLre~k~~pDLVILDI~M--PdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlK 135 (663)
++++.+.+. ..|+|++-... -..+-++++++||+ .++|+|++.... +.+..||+.|+.-
T Consensus 27 ~~l~~~~~~--GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~p 87 (235)
T 3w01_A 27 DDLDAICMS--QTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFVP 87 (235)
T ss_dssp HHHHHHHTS--SCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEEE
T ss_pred HHHHHHHHc--CCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEEc
Confidence 344444332 37999988754 22346778888887 899999988753 3346699998875
No 285
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=23.46 E-value=1.7e+02 Score=28.82 Aligned_cols=56 Identities=20% Similarity=0.007 Sum_probs=37.3
Q ss_pred ccEEEEEeCC--------------------HHHHHHHHHHHHhCCCeEEEECCHH-----------------HHHHHHHH
Q 006044 33 GLRVLVVDDD--------------------ITCLRILEQMLRRCLYNVTTCSQAA-----------------VALDILRE 75 (663)
Q Consensus 33 giRVLIVDDD--------------------~~~re~L~~lL~~~gy~V~tasng~-----------------eALelLre 75 (663)
+||||++-.. ......+.+.|.+.|++|..+.... ...+.+++
T Consensus 3 ~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 82 (342)
T 2iuy_A 3 PLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGAPGSPAGRPGLTVVPAGEPEEIERWLRT 82 (342)
T ss_dssp CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESCTTSCCCSTTEEECSCCSHHHHHHHHHH
T ss_pred ccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEecCCCCCCCCcceeccCCcHHHHHHHHHh
Confidence 4789999776 2355566777777799987665432 34555665
Q ss_pred cCCCceEEEEecCCC
Q 006044 76 RKGCFDVVLSDVHMP 90 (663)
Q Consensus 76 ~k~~pDLVILDI~MP 90 (663)
.+ ||+|++-...+
T Consensus 83 ~~--~Dvi~~~~~~~ 95 (342)
T 2iuy_A 83 AD--VDVVHDHSGGV 95 (342)
T ss_dssp CC--CSEEEECSSSS
T ss_pred cC--CCEEEECCchh
Confidence 54 89988865443
No 286
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=23.27 E-value=6.1e+02 Score=25.91 Aligned_cols=90 Identities=13% Similarity=0.152 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHhC-CCeEE--EECCHHHHHHHHHHcCCCceEEEEecCCCCC--C------------HHHHHHHHhc
Q 006044 41 DDITCLRILEQMLRRC-LYNVT--TCSQAAVALDILRERKGCFDVVLSDVHMPDM--D------------GFKLLEHIGL 103 (663)
Q Consensus 41 DD~~~re~L~~lL~~~-gy~V~--tasng~eALelLre~k~~pDLVILDI~MPdm--D------------G~ELL~~Ir~ 103 (663)
+.....+.++.+-+.. +..|. ...+.++|..+++.- .|.|++.-+ ++. + -++++.+++.
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~aG---ad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENAG---ADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHT---CSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcC---CCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 4456666777666654 33333 366788887766543 788887432 211 1 3667777765
Q ss_pred cCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 104 EMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 104 ~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
..++|||.-.+-.+...+.+++.+||+...+
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 5689999988888889999999999987543
No 287
>3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A*
Probab=22.97 E-value=3.4e+02 Score=28.24 Aligned_cols=80 Identities=14% Similarity=0.080 Sum_probs=52.0
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE-eCCCCHHHHH
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL-IKPIREEELK 143 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL-lKP~s~eeLk 143 (663)
+..+|++.++... .+++.+++-=++..| ++.+++|+....+||+.==.-.+.....++++.|+.|++ +|+...-=|.
T Consensus 209 ~~~~a~~~~~~l~-~~~i~~iEqP~~~~d-~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~~GGit 286 (372)
T 3tj4_A 209 DLPTCQRFCAAAK-DLDIYWFEEPLWYDD-VTSHARLARNTSIPIALGEQLYTVDAFRSFIDAGAVAYVQPDVTRLGGIT 286 (372)
T ss_dssp CHHHHHHHHHHTT-TSCEEEEESCSCTTC-HHHHHHHHHHCSSCEEECTTCCSHHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHHh-hcCCCEEECCCCchh-HHHHHHHHhhcCCCEEeCCCccCHHHHHHHHHcCCCCEEEeCccccCCHH
Confidence 5677877777653 467777775555333 666677766667887753333456777888888877764 7887654444
Q ss_pred HHH
Q 006044 144 NIW 146 (663)
Q Consensus 144 ~~I 146 (663)
.++
T Consensus 287 ~~~ 289 (372)
T 3tj4_A 287 EYI 289 (372)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 288
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=22.92 E-value=1.2e+02 Score=25.16 Aligned_cols=40 Identities=18% Similarity=0.232 Sum_probs=32.5
Q ss_pred cccHHHHHHHHHHHHHhccCcccH---HHHHHHhcCCCCCHHHHHHH
Q 006044 224 VWSVELHQQFVSAVNQLGIDKAVP---KRILELMNVPGLTRENVASH 267 (663)
Q Consensus 224 vWTvELHrkFv~AVnqLGidKAvP---KkILElMnVpgLTrenVASH 267 (663)
.||.|=.+.|.+|+..+..+ .| .+|.+. ||+-|.++|..|
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~--tp~rWe~IA~~--V~gKT~eE~~~h 52 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKH--KPGFWSEVAAA--VGSRSPEECQRK 52 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSS--SSSHHHHHHHH--TTTSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCC--CccHHHHHHHH--cCCCCHHHHHHH
Confidence 59999999999999988643 55 356655 899999999877
No 289
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=22.88 E-value=5.3e+02 Score=26.89 Aligned_cols=84 Identities=18% Similarity=0.192 Sum_probs=54.0
Q ss_pred CCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhc---cC--CCcEEEEecCCCHHHHHHHHhcCCCeEEe-CCC
Q 006044 64 SQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGL---EM--DLPVIMMSADGRVSAVMRGIRHGACDYLI-KPI 137 (663)
Q Consensus 64 sng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~---~~--~IPVIILSa~~d~e~v~kAl~~GA~dYLl-KP~ 137 (663)
....+.++.+.... +|.||+|+.=.-.+--.+.+.++. .. ..++++=+...+...+..+++.|+++.++ |=-
T Consensus 50 i~~p~~~e~a~~~G--aD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~ 127 (339)
T 1izc_A 50 IPSTFVTKVLAATK--PDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVE 127 (339)
T ss_dssp SCCHHHHHHHHHTC--CSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCC
T ss_pred CCCHHHHHHHHhCC--CCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCC
Confidence 33445556665544 999999996443343334444432 11 26778777777888889999999987444 334
Q ss_pred CHHHHHHHHHHH
Q 006044 138 REEELKNIWQHV 149 (663)
Q Consensus 138 s~eeLk~~Iq~V 149 (663)
+.++++.+.+.+
T Consensus 128 saee~~~~~~~~ 139 (339)
T 1izc_A 128 TVEEVREFVKEM 139 (339)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHh
Confidence 788888776553
No 290
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=22.72 E-value=52 Score=32.06 Aligned_cols=71 Identities=15% Similarity=0.158 Sum_probs=46.9
Q ss_pred CCCCccEEEEEeCCHHHHHHHHHHHHhCCC--eE-EEECCHHHHHHHHHHc--CCCceEEEEecCCCCCCHHHHHHHH
Q 006044 29 QFPAGLRVLVVDDDITCLRILEQMLRRCLY--NV-TTCSQAAVALDILRER--KGCFDVVLSDVHMPDMDGFKLLEHI 101 (663)
Q Consensus 29 ~fP~giRVLIVDDD~~~re~L~~lL~~~gy--~V-~tasng~eALelLre~--k~~pDLVILDI~MPdmDG~ELL~~I 101 (663)
.+|.+-+|.-||-++...+..++.+...+. .| ....++.+.+..+... ...||+|++|... .+-.++++.+
T Consensus 81 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 156 (242)
T 3r3h_A 81 ALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDADK--TNYLNYYELA 156 (242)
T ss_dssp TSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESCG--GGHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCCh--HHhHHHHHHH
Confidence 345567999999998887778888876653 34 3567777777655321 2359999999752 2333445554
No 291
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=22.65 E-value=2.9e+02 Score=28.04 Aligned_cols=63 Identities=17% Similarity=0.080 Sum_probs=45.8
Q ss_pred CHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEeCC
Q 006044 65 QAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLIKP 136 (663)
Q Consensus 65 ng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP 136 (663)
+..+.++.+.+.. +|+|.+....| .++++.++.. .++|+... ...+.+.++.+.|++.+++-.
T Consensus 84 ~~~~~~~~~~~~g--~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~g 146 (328)
T 2gjl_A 84 PYAEYRAAIIEAG--IRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSIDG 146 (328)
T ss_dssp CHHHHHHHHHHTT--CCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEEC
T ss_pred cHHHHHHHHHhcC--CCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEEC
Confidence 3457777777654 89999987765 5778888654 67777543 356677889999999888743
No 292
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=22.51 E-value=2.8e+02 Score=29.47 Aligned_cols=77 Identities=13% Similarity=0.025 Sum_probs=48.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCe---EE-EECCHHHHHH-HHHHcCCCceEEEEecCCCCCCHHHHHHHH-hccCCC
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYN---VT-TCSQAAVALD-ILRERKGCFDVVLSDVHMPDMDGFKLLEHI-GLEMDL 107 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~---V~-tasng~eALe-lLre~k~~pDLVILDI~MPdmDG~ELL~~I-r~~~~I 107 (663)
-+|..||-++...+.+++-++..+.. +. ...++.+.+. .+ ...||+|++|- ++.. .++++.+ +....-
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP--~g~~-~~~l~~a~~~Lk~g 151 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP--FGTP-VPFIESVALSMKRG 151 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC--SSCC-HHHHHHHHHHEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC--CcCH-HHHHHHHHHHhCCC
Confidence 47999999999999999999877642 43 4556655543 22 23599999997 3321 2455543 211122
Q ss_pred cEEEEecCC
Q 006044 108 PVIMMSADG 116 (663)
Q Consensus 108 PVIILSa~~ 116 (663)
-++.+|..+
T Consensus 152 Gll~~t~t~ 160 (392)
T 3axs_A 152 GILSLTATD 160 (392)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEecc
Confidence 366676643
No 293
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=22.50 E-value=2.4e+02 Score=22.30 Aligned_cols=51 Identities=16% Similarity=0.198 Sum_probs=36.5
Q ss_pred CcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Q 006044 221 PRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLK 276 (663)
Q Consensus 221 pRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHLQKyRl~LK 276 (663)
.|..||.|--...+++|.+.|..+= +.|.+.+...+-|..++.. +||.++|
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W--~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k 60 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNW--AAISKNYPFVNRTAVMIKD---RWRTMKR 60 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCH--HHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCch--HHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence 3557999999999999999996543 4788876666777666533 3444443
No 294
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=22.28 E-value=1.4e+02 Score=30.72 Aligned_cols=51 Identities=20% Similarity=0.107 Sum_probs=30.1
Q ss_pred HHHHHHhccCCCcEEEEecCCC-HHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHH
Q 006044 96 KLLEHIGLEMDLPVIMMSADGR-VSAVMRGIRHGACDYLIKPIREEELKNIWQHVVR 151 (663)
Q Consensus 96 ELL~~Ir~~~~IPVIILSa~~d-~e~v~kAl~~GA~dYLlKP~s~eeLk~~Iq~VLr 151 (663)
.+++.+ ...+|||.-+.... .+.+....+.| ++..+-+.++|.+++..++.
T Consensus 294 ~~lEAm--A~G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~ 345 (374)
T 2xci_A 294 NLLEPT--CWGIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLS 345 (374)
T ss_dssp CCHHHH--TTTCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHH
T ss_pred CHHHHH--HhCCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHh
Confidence 344444 35788885222233 33333333444 56667789999999988875
No 295
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=22.25 E-value=3.1e+02 Score=28.04 Aligned_cols=90 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred EEEEeCCHH-------HHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCc
Q 006044 36 VLVVDDDIT-------CLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLP 108 (663)
Q Consensus 36 VLIVDDD~~-------~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IP 108 (663)
+||.||+.. ..+..++.+........++.+.+++.+.++.. .|.|.+| .++--++-+.++....-.
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~aG---aD~I~ld----~~~~~~~k~av~~v~~~i 241 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEAG---ADLILLD----NFPLEALREAVRRVGGRV 241 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHHT---CSEEEEE----SCCHHHHHHHHHHHTTSS
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHcC---CCEEEEC----CCCHHHHHHHHHHhCCCC
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeE
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDY 132 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dY 132 (663)
.|+.++--+.+.+.+..+.|++.+
T Consensus 242 pi~AsGGIt~eni~~~a~tGvD~I 265 (286)
T 1x1o_A 242 PLEASGNMTLERAKAAAEAGVDYV 265 (286)
T ss_dssp CEEEESSCCHHHHHHHHHHTCSEE
T ss_pred eEEEEcCCCHHHHHHHHHcCCCEE
No 296
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.24 E-value=30 Score=35.35 Aligned_cols=53 Identities=17% Similarity=0.273 Sum_probs=31.5
Q ss_pred ccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEE---CCHH----HHHHHHHHcCCCceEEEEec
Q 006044 33 GLRVLVVDDDI---TCLRILEQMLRRCLYNVTTC---SQAA----VALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 33 giRVLIVDDD~---~~re~L~~lL~~~gy~V~ta---sng~----eALelLre~k~~pDLVILDI 87 (663)
+.+|+++|-|. ...+.++.+....+..+... .+.. ++++.++.. .+|+||+|.
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~~--~~D~ViIDT 188 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLSE--KMEIIIVDT 188 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEeC
Confidence 56899999883 34444544444445555443 2333 344444423 499999998
No 297
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=22.10 E-value=4.3e+02 Score=26.68 Aligned_cols=106 Identities=14% Similarity=0.150 Sum_probs=57.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHH-HHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDIL-RERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelL-re~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPV 109 (663)
.++||.||--=..-+..+..+....++++. .++.-.+..+.+ +... ... -.|--+++. ..++-+
T Consensus 4 ~~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g--~~~--------~~~~~~~l~----~~~~D~ 69 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYN--CAG--------DATMEALLA----REDVEM 69 (354)
T ss_dssp CCEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHT--CCC--------CSSHHHHHH----CSSCCE
T ss_pred CcceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcC--CCC--------cCCHHHHhc----CCCCCE
Confidence 457888887766554444433332356654 444333333333 2221 110 012122222 233444
Q ss_pred EEEec--CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006044 110 IMMSA--DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (663)
Q Consensus 110 IILSa--~~d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~VLr 151 (663)
|+++. ....+.+.+|+++|..=|+-||+ +.++..++++.+-+
T Consensus 70 V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 70 VIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp EEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 44443 33467788999999999999995 57788777766543
No 298
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=21.90 E-value=2.4e+02 Score=26.92 Aligned_cols=57 Identities=16% Similarity=0.032 Sum_probs=35.0
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCCH-HHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHH
Q 006044 93 DGFKLLEHIGLEMDLPVIMMSADGRV-SAVMRGIRHGACDYLIKPI--REEELKNIWQHV 149 (663)
Q Consensus 93 DG~ELL~~Ir~~~~IPVIILSa~~d~-e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~V 149 (663)
.|++++++|+...+.|+.+..-..+. +.+..+.++||+...+-.. ..+++...++.+
T Consensus 55 ~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~ 114 (230)
T 1rpx_A 55 IGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQI 114 (230)
T ss_dssp CCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHH
T ss_pred cCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHH
Confidence 47899999986555665543333344 4677888999987654433 334444444443
No 299
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=21.78 E-value=1.8e+02 Score=29.80 Aligned_cols=56 Identities=20% Similarity=0.283 Sum_probs=37.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhC-----CCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCC
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRC-----LYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMP 90 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~-----gy~V~-tasng~eALelLre~k~~pDLVILDI~MP 90 (663)
...+|..||=++...+..++.+... .-.|. ...++.+.+.. ....||+||+|..-|
T Consensus 131 ~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~ 192 (314)
T 2b2c_A 131 SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN---HKNEFDVIITDSSDP 192 (314)
T ss_dssp TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH---CTTCEEEEEECCC--
T ss_pred CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh---cCCCceEEEEcCCCC
Confidence 3468999999999999988887542 12333 55666665443 234599999998543
No 300
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=21.76 E-value=1.5e+02 Score=28.56 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=40.1
Q ss_pred HHHHHHHHHHhCCCeEEEEC--C---HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecCC
Q 006044 45 CLRILEQMLRRCLYNVTTCS--Q---AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSADG 116 (663)
Q Consensus 45 ~re~L~~lL~~~gy~V~tas--n---g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~~ 116 (663)
+...+++.+.+.+|.+..+. + ..+.++.+... .+|-||+--... +. +.++.+.. .+|+|++....
T Consensus 29 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~--~~-~~~~~~~~--~iPvV~i~~~~ 98 (289)
T 3k9c_A 29 LVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMRE--RCEAAILLGTRF--DT-DELGALAD--RVPALVVARAS 98 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTTT--TEEEEEEETCCC--CH-HHHHHHHT--TSCEEEESSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHhC--CCCEEEEECCCC--CH-HHHHHHHc--CCCEEEEcCCC
Confidence 45566677777899876543 2 34556666544 389877753222 22 56666643 89999886543
No 301
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=21.52 E-value=2.2e+02 Score=25.42 Aligned_cols=49 Identities=22% Similarity=0.243 Sum_probs=37.1
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHcCCCceEEEEec
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRRCLYNVTTCSQAAVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~~gy~V~tasng~eALelLre~k~~pDLVILDI 87 (663)
.+.+|.++..... ..+|...+..+..+.+..++++++...+ .|+++.|.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g~--~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTKK--ADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTTS--SSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcCC--CCEEEecH
Confidence 4567877766652 3445556788889999999999998755 99999974
No 302
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=21.42 E-value=3e+02 Score=21.67 Aligned_cols=56 Identities=20% Similarity=0.222 Sum_probs=39.8
Q ss_pred CCCCCcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Q 006044 217 TTKKPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASHLQKFRLYLKR 277 (663)
Q Consensus 217 ~~KKpRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASHLQKyRl~LKr 277 (663)
..++.+-.||.|=-...+++|.+.|..+= +.|.+.|...+-|..++..+ |+.+|+.
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W--~~Ia~~~~~~~Rt~~qcr~R---w~~~l~p 60 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNW--SKILLHYKFNNRTSVMLKDR---WRTMKKL 60 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCH--HHHHHHSCCSSCCHHHHHHH---HHHHHHT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcH--HHHHHHcCcCCCCHHHHHHH---HHHHcCC
Confidence 34566778999999999999999996543 57888764336677666543 5555553
No 303
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=21.42 E-value=4.4e+02 Score=24.37 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=47.4
Q ss_pred EECCHHHHHHHHHHc-CCCceEEEEecCCCCCCHHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEeCCCCH
Q 006044 62 TCSQAAVALDILRER-KGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLIKPIRE 139 (663)
Q Consensus 62 tasng~eALelLre~-k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLlKP~s~ 139 (663)
...+.+++.+.++.. ....|+|-+.+..| ++.+.++.+|+. +.-.+|-+..-.+.+.+..+.+.||+.. .-|...
T Consensus 17 ~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~ 93 (205)
T 1wa3_A 17 RANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHLD 93 (205)
T ss_dssp CCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCC
T ss_pred ecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-EcCCCC
Confidence 445566665555432 12377776655544 577778888754 3122344434456778899999998755 667655
Q ss_pred HHHHH
Q 006044 140 EELKN 144 (663)
Q Consensus 140 eeLk~ 144 (663)
.++.+
T Consensus 94 ~~~~~ 98 (205)
T 1wa3_A 94 EEISQ 98 (205)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 304
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=21.32 E-value=2.2e+02 Score=26.38 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=32.6
Q ss_pred CCCCCCccEEEEE--eCC------------HHHHHHHHHHHHhCCCeEE---EECCHHHHHH-HHHHc--CCCceEEEEe
Q 006044 27 PDQFPAGLRVLVV--DDD------------ITCLRILEQMLRRCLYNVT---TCSQAAVALD-ILRER--KGCFDVVLSD 86 (663)
Q Consensus 27 ~d~fP~giRVLIV--DDD------------~~~re~L~~lL~~~gy~V~---tasng~eALe-lLre~--k~~pDLVILD 86 (663)
....|..+||.|+ -|. ......|.++|.+.|++|. ++.|-.+.+. .++.. ...+|+||+-
T Consensus 9 ~~~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVitt 88 (178)
T 3iwt_A 9 KENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIIST 88 (178)
T ss_dssp ----CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEE
T ss_pred HhcCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEec
Confidence 3456777776655 341 2445678899998888764 4555444333 33321 1236777764
No 305
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=21.17 E-value=2.9e+02 Score=29.24 Aligned_cols=108 Identities=13% Similarity=0.133 Sum_probs=59.2
Q ss_pred CccEEEEEeCCHHHH-HHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCce--E-EEEecCCCCCCHHHHHHHHhccCC
Q 006044 32 AGLRVLVVDDDITCL-RILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFD--V-VLSDVHMPDMDGFKLLEHIGLEMD 106 (663)
Q Consensus 32 ~giRVLIVDDD~~~r-e~L~~lL~~~gy~V~-tasng~eALelLre~k~~pD--L-VILDI~MPdmDG~ELL~~Ir~~~~ 106 (663)
..+||.||--=..-+ ..+..+....++++. .++...+..+.+.+....+. + +..|+ +.+-..++
T Consensus 82 ~~irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~-----------~~ll~~~~ 150 (433)
T 1h6d_A 82 RRFGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNF-----------DKIAKDPK 150 (433)
T ss_dssp CCEEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSG-----------GGGGGCTT
T ss_pred CceEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCH-----------HHHhcCCC
Confidence 358999998876654 344443332356654 55544444444433211111 1 11111 12212234
Q ss_pred CcEEEEecCC--CHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006044 107 LPVIMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (663)
Q Consensus 107 IPVIILSa~~--d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~VL 150 (663)
+-+|+++... ..+.+..|+++|..=|+-||+ +.++..++++.+-
T Consensus 151 vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~ 198 (433)
T 1h6d_A 151 IDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAK 198 (433)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHH
T ss_pred CCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHH
Confidence 5555555433 467788999999988999996 6777776666543
No 306
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=21.16 E-value=5.5e+02 Score=26.51 Aligned_cols=39 Identities=18% Similarity=0.147 Sum_probs=31.9
Q ss_pred HHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 95 FKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 95 ~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
++++++|++..++|||..-.-.+.+.+.++++.|.+|.+
T Consensus 266 ~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 266 VPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp HHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeEE
Confidence 678888887778999988777889999999999955543
No 307
>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*
Probab=21.12 E-value=1.7e+02 Score=28.86 Aligned_cols=83 Identities=12% Similarity=0.205 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHcC-CCceEEEEecCC-CCC-CHHHHHHHHhccCCCcE--EEEecCCCHHHHHHHHhcCCCeEEeCCCC-
Q 006044 65 QAAVALDILRERK-GCFDVVLSDVHM-PDM-DGFKLLEHIGLEMDLPV--IMMSADGRVSAVMRGIRHGACDYLIKPIR- 138 (663)
Q Consensus 65 ng~eALelLre~k-~~pDLVILDI~M-Pdm-DG~ELL~~Ir~~~~IPV--IILSa~~d~e~v~kAl~~GA~dYLlKP~s- 138 (663)
+-.++++.+ +.. +-.++=++|-+. |.. -|..+++.||...+.|+ -+++.. -..++..+.++||+....-...
T Consensus 14 ~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~d-p~~~i~~~~~aGAd~itvh~Ea~ 91 (231)
T 3ctl_A 14 KFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTR-PQDYIAQLARAGADFITLHPETI 91 (231)
T ss_dssp GHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSC-GGGTHHHHHHHTCSEEEECGGGC
T ss_pred hHHHHHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecC-HHHHHHHHHHcCCCEEEECcccC
Confidence 456677777 332 112233455442 333 38999999987555654 345543 3446788899999877654433
Q ss_pred HHHHHHHHHHH
Q 006044 139 EEELKNIWQHV 149 (663)
Q Consensus 139 ~eeLk~~Iq~V 149 (663)
...+.++++.+
T Consensus 92 ~~~~~~~i~~i 102 (231)
T 3ctl_A 92 NGQAFRLIDEI 102 (231)
T ss_dssp TTTHHHHHHHH
T ss_pred CccHHHHHHHH
Confidence 23355555443
No 308
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=21.12 E-value=88 Score=28.83 Aligned_cols=85 Identities=20% Similarity=0.174 Sum_probs=42.2
Q ss_pred CccEEEEEeCCH-HHHHHHHHHHHhCCC---------eEEEECCHH---HHHHHHHHcCC-CceEEEEecCCCCCCH---
Q 006044 32 AGLRVLVVDDDI-TCLRILEQMLRRCLY---------NVTTCSQAA---VALDILRERKG-CFDVVLSDVHMPDMDG--- 94 (663)
Q Consensus 32 ~giRVLIVDDD~-~~re~L~~lL~~~gy---------~V~tasng~---eALelLre~k~-~pDLVILDI~MPdmDG--- 94 (663)
.+-+|++++-+. .....+..++...+. .+....++. ..++.++.... .+++||+|--....+.
T Consensus 44 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~ 123 (220)
T 2cvh_A 44 SGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEEN 123 (220)
T ss_dssp HCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGG
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCc
Confidence 456788887554 111233334443332 222333332 24444443322 4999999975443332
Q ss_pred --------HHHHHHHh---ccCCCcEEEEecCC
Q 006044 95 --------FKLLEHIG---LEMDLPVIMMSADG 116 (663)
Q Consensus 95 --------~ELL~~Ir---~~~~IPVIILSa~~ 116 (663)
.++++.|+ ...+++||+++...
T Consensus 124 ~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~ 156 (220)
T 2cvh_A 124 RSGLIAELSRQLQVLLWIARKHNIPVIVINQVH 156 (220)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSS
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEE
Confidence 22433332 33477888776543
No 309
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=20.88 E-value=6.1e+02 Score=25.56 Aligned_cols=107 Identities=13% Similarity=0.117 Sum_probs=61.6
Q ss_pred CccEEEEEeCCHHHHHHHHHHHHh-CCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcE
Q 006044 32 AGLRVLVVDDDITCLRILEQMLRR-CLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPV 109 (663)
Q Consensus 32 ~giRVLIVDDD~~~re~L~~lL~~-~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPV 109 (663)
.++||.||--=..-...+..+... .++++. .++.-.+..+.+.+. +.+-.. .|--++++. +++-+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~---~~~~~~------~~~~~ll~~----~~~D~ 78 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER---TGARGH------ASLTDMLAQ----TDADI 78 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---HCCEEE------SCHHHHHHH----CCCSE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH---cCCcee------CCHHHHhcC----CCCCE
Confidence 458999998765555556555554 366655 455444444443332 222111 122233332 34445
Q ss_pred EEEecCC--CHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHHH
Q 006044 110 IMMSADG--RVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVVR 151 (663)
Q Consensus 110 IILSa~~--d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~VLr 151 (663)
|+++... ..+.+.+++++|..=|+-||+ +.++..++++.+-+
T Consensus 79 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 79 VILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 5554433 356788899999998999995 67777777765533
No 310
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=20.76 E-value=2.4e+02 Score=28.27 Aligned_cols=104 Identities=12% Similarity=0.113 Sum_probs=58.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCCeEE-EECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEE
Q 006044 33 GLRVLVVDDDITCLRILEQMLRRCLYNVT-TCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIM 111 (663)
Q Consensus 33 giRVLIVDDD~~~re~L~~lL~~~gy~V~-tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVII 111 (663)
++||.||--=..-...+..+....++++. .++...+..+.+.+. +.+-.. |--++++ .+++-+|+
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~---~~~~~~-------~~~~~l~----~~~~D~V~ 68 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA---YGCEVR-------TIDAIEA----AADIDAVV 68 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH---TTCEEC-------CHHHHHH----CTTCCEEE
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH---hCCCcC-------CHHHHhc----CCCCCEEE
Confidence 46888887766555555544443466655 455444444444332 111121 1122222 23344444
Q ss_pred Eec--CCCHHHHHHHHhcCCCeEEeCCC--CHHHHHHHHHHHH
Q 006044 112 MSA--DGRVSAVMRGIRHGACDYLIKPI--REEELKNIWQHVV 150 (663)
Q Consensus 112 LSa--~~d~e~v~kAl~~GA~dYLlKP~--s~eeLk~~Iq~VL 150 (663)
++. ....+.+.+++++|..=|+.||+ +.++..++++.+-
T Consensus 69 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~ 111 (331)
T 4hkt_A 69 ICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVS 111 (331)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHH
T ss_pred EeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHH
Confidence 443 33457788899999988999994 6788777776543
No 311
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=20.71 E-value=4.9e+02 Score=27.03 Aligned_cols=69 Identities=9% Similarity=0.006 Sum_probs=45.4
Q ss_pred HHHHHHHHHHcCCCceEEEEecC--------CCCCCHHHHHHHHhccCCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 66 AAVALDILRERKGCFDVVLSDVH--------MPDMDGFKLLEHIGLEMDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 66 g~eALelLre~k~~pDLVILDI~--------MPdmDG~ELL~~Ir~~~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.++++++++......|.|-+... .+..--+++++.|++..++|||..-...+.+.+.++++.|.+|++.
T Consensus 229 ~~~~~~~a~~l~~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~ 305 (343)
T 3kru_A 229 IDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCNIKTSAVGLITTQELAEEILSNERADLVA 305 (343)
T ss_dssp HHHHHHHHHHHTTTCSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCEEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhhccccEEeccCCceEeeeecccCceeehHHHHHHHhcCcccceeeeeeHHHHHHHHHhchhhHHHH
Confidence 56677766654322665555311 1111235778888876679998877777899999999999766653
No 312
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=20.66 E-value=5.5e+02 Score=26.26 Aligned_cols=90 Identities=11% Similarity=0.045 Sum_probs=56.2
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCCC--eEEEECCHHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhcc-CCCc
Q 006044 36 VLVVDDDITC----LRILEQMLRRCLY--NVTTCSQAAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLE-MDLP 108 (663)
Q Consensus 36 VLIVDDD~~~----re~L~~lL~~~gy--~V~tasng~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~-~~IP 108 (663)
|+|-|.+... .+.++..-+.... ....+.+.+++.+.++. ..|.|.+|- ++--++.+..+.. .+++
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~----~~~e~l~~~v~~~~~~~~ 254 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDN----FNTDQMREAVKRVNGQAR 254 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESS----CCHHHHHHHHHTTCTTCC
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCe
Confidence 6776666554 4555555444443 34578888888777753 389999985 3333333333322 2444
Q ss_pred EEEEecCCCHHHHHHHHhcCCCeEE
Q 006044 109 VIMMSADGRVSAVMRGIRHGACDYL 133 (663)
Q Consensus 109 VIILSa~~d~e~v~kAl~~GA~dYL 133 (663)
|..|+.-+.+.+.+..+.|++.+-
T Consensus 255 -I~ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 255 -LEVSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp -EEECCCSCHHHHHHHHHTTCSEEE
T ss_pred -EEEECCCCHHHHHHHHHcCCCEEE
Confidence 446666788999999999996543
No 313
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=20.65 E-value=6.2e+02 Score=26.14 Aligned_cols=76 Identities=8% Similarity=0.112 Sum_probs=48.9
Q ss_pred CeEEEECCHHHHHHHHHHcCCCceEEEEecCCC--CCCH----------HHHHHHH----h-ccCCCcEEEEe-cCCCHH
Q 006044 58 YNVTTCSQAAVALDILRERKGCFDVVLSDVHMP--DMDG----------FKLLEHI----G-LEMDLPVIMMS-ADGRVS 119 (663)
Q Consensus 58 y~V~tasng~eALelLre~k~~pDLVILDI~MP--dmDG----------~ELL~~I----r-~~~~IPVIILS-a~~d~e 119 (663)
+.+..+.+.++|..+.... ||+|++..-+- +.-| .+.++.+ + ..+++.|+.-. .-...+
T Consensus 165 ~Ti~~v~~~eeA~amA~ag---pDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpe 241 (286)
T 2p10_A 165 LTTPYVFSPEDAVAMAKAG---ADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPE 241 (286)
T ss_dssp EECCEECSHHHHHHHHHHT---CSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHH
T ss_pred eEEEecCCHHHHHHHHHcC---CCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHH
Confidence 4566888999999887653 89999876432 2222 3344444 2 23565333333 236788
Q ss_pred HHHHHHhc--CCCeEEeCC
Q 006044 120 AVMRGIRH--GACDYLIKP 136 (663)
Q Consensus 120 ~v~kAl~~--GA~dYLlKP 136 (663)
.+..+++. |+++|+.=.
T Consensus 242 Dv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 242 DARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp HHHHHHHHCTTCCEEEESH
T ss_pred HHHHHHhcCCCccEEEeeh
Confidence 89999999 999999854
No 314
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=20.55 E-value=2.1e+02 Score=27.73 Aligned_cols=66 Identities=12% Similarity=0.065 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhCCCeEEEECC---H---HHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006044 44 TCLRILEQMLRRCLYNVTTCSQ---A---AVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMMSAD 115 (663)
Q Consensus 44 ~~re~L~~lL~~~gy~V~tasn---g---~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIILSa~ 115 (663)
.+...+++.+++.+|.+..+.. . .+.++.+.... +|-||+--.... + -+.++.+.. .+|||++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~--vdgiI~~~~~~~-~-~~~~~~l~~--~iPvV~i~~~ 103 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEGR--VDGVLLQRREDF-D-DDMLAAVLE--GVPAVTINSR 103 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSCS--SSEEEECCCTTC-C-HHHHHHHHT--TSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhCC--CcEEEEecCCCC-c-HHHHHHHhC--CCCEEEECCc
Confidence 4566777888888998765542 2 23455555444 887777432222 1 125666655 8999988654
No 315
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=20.54 E-value=1.9e+02 Score=29.13 Aligned_cols=72 Identities=26% Similarity=0.265 Sum_probs=0.0
Q ss_pred ccEEEEEe----CCHHHHHHHHHHHHhCCCeEEEECC-------------------------------------------
Q 006044 33 GLRVLVVD----DDITCLRILEQMLRRCLYNVTTCSQ------------------------------------------- 65 (663)
Q Consensus 33 giRVLIVD----DD~~~re~L~~lL~~~gy~V~tasn------------------------------------------- 65 (663)
.||||++- -+..-...|...|.+.|++|..+..
T Consensus 1 ~MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (391)
T 3tsa_A 1 HMRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRD 80 (391)
T ss_dssp CCEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTT
T ss_pred CcEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhccccccccccccc
Q ss_pred ----------------------HHHHHHHHHHcCCCceEEEEecCCCCCCHHHHHHHHhccCCCcEEEE
Q 006044 66 ----------------------AAVALDILRERKGCFDVVLSDVHMPDMDGFKLLEHIGLEMDLPVIMM 112 (663)
Q Consensus 66 ----------------------g~eALelLre~k~~pDLVILDI~MPdmDG~ELL~~Ir~~~~IPVIIL 112 (663)
..+..+.+++.+ ||+|+.|. +...|.-+.+.+ .+|++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--PD~Vv~~~--~~~~~~~aa~~~----giP~v~~ 141 (391)
T 3tsa_A 81 TEAGRQLWEQTASNVAQSSLDQLPEYLRLAEAWR--PSVLLVDV--CALIGRVLGGLL----DLPVVLH 141 (391)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CSEEEEET--TCHHHHHHHHHT----TCCEEEE
T ss_pred chhHHHHHHHHHHHHhhcchhhHHHHHHHHHhcC--CCEEEeCc--chhHHHHHHHHh----CCCEEEE
No 316
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=20.45 E-value=88 Score=29.25 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=25.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEEEECCH
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVTTCSQA 66 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~tasng 66 (663)
++|+|||.-..+...+.+.|++.++.+......
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC
Confidence 479999976667778888898888887766544
No 317
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=20.43 E-value=2.5e+02 Score=29.75 Aligned_cols=65 Identities=14% Similarity=-0.061 Sum_probs=43.1
Q ss_pred HHHHHHHHHcCCCceEEEEecCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 67 AVALDILRERKGCFDVVLSDVHMPDMD-GFKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 67 ~eALelLre~k~~pDLVILDI~MPdmD-G~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.+.++.+.+. .+|+|.+|....... -++.+++|++. +++|||+=. -...+.+..+.++||+...+
T Consensus 102 ~e~~~~a~~a--GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~-V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 102 LQRAEALRDA--GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGN-VATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHHT--TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcC-cCCHHHHHHHHHcCCCEEEE
Confidence 3444444444 389999997653322 25677888754 578888611 23567788999999987775
No 318
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=20.38 E-value=64 Score=34.92 Aligned_cols=54 Identities=20% Similarity=0.173 Sum_probs=31.7
Q ss_pred CccEEEEEeCCH---HHHHHHHHHHHhCCCeEEEECC---H----HHHHHHHHHcCCCceEEEEec
Q 006044 32 AGLRVLVVDDDI---TCLRILEQMLRRCLYNVTTCSQ---A----AVALDILRERKGCFDVVLSDV 87 (663)
Q Consensus 32 ~giRVLIVDDD~---~~re~L~~lL~~~gy~V~tasn---g----~eALelLre~k~~pDLVILDI 87 (663)
.+.+|+++|-|. ...+.|..+-...+..+..... . .++++.++.. .+|+||+|.
T Consensus 125 ~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~~--~~DvVIIDT 188 (425)
T 2ffh_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLE--ARDLILVDT 188 (425)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHT--TCSEEEEEC
T ss_pred cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHHC--CCCEEEEcC
Confidence 467899999883 3333344444444666655432 2 2344444323 499999996
No 319
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=20.30 E-value=1e+02 Score=30.45 Aligned_cols=105 Identities=13% Similarity=0.085 Sum_probs=59.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCeEE--EECCHHHHHHHHHHcCCCceEEEEecC---------CCCCCHHHHHHHHh
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLYNVT--TCSQAAVALDILRERKGCFDVVLSDVH---------MPDMDGFKLLEHIG 102 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy~V~--tasng~eALelLre~k~~pDLVILDI~---------MPdmDG~ELL~~Ir 102 (663)
++++|+-+-+ ..+.++++.+..+-.|. -.-+..+..+.+.. .|++++--. ..+.-|.-+++.+.
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHHh
Confidence 4566665532 22333333333222232 22344444555553 477776433 13444666777763
Q ss_pred ccCCCcEEEEecCCCHHHHHHHHhc--CCCeEEeCCCCHHHHHHHHHHHH
Q 006044 103 LEMDLPVIMMSADGRVSAVMRGIRH--GACDYLIKPIREEELKNIWQHVV 150 (663)
Q Consensus 103 ~~~~IPVIILSa~~d~e~v~kAl~~--GA~dYLlKP~s~eeLk~~Iq~VL 150 (663)
..+|||..-. ....+.++. |..+++..| +.++|.+++.+++
T Consensus 264 --~G~PvI~s~~----~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~ 306 (342)
T 2iuy_A 264 --SGTPVVGTGN----GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLP 306 (342)
T ss_dssp --TTCCEEECCT----TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSC
T ss_pred --cCCCEEEcCC----CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHH
Confidence 5678875332 234566677 788899999 9999998887654
No 320
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=20.23 E-value=2.9e+02 Score=27.70 Aligned_cols=65 Identities=14% Similarity=0.068 Sum_probs=38.2
Q ss_pred HHHHHHHHcCCCce-EEEEecCCCCCCH-----------HHHHHHHhccCCCcEEE-EecCCCHHH----HHHHHhcCCC
Q 006044 68 VALDILRERKGCFD-VVLSDVHMPDMDG-----------FKLLEHIGLEMDLPVIM-MSADGRVSA----VMRGIRHGAC 130 (663)
Q Consensus 68 eALelLre~k~~pD-LVILDI~MPdmDG-----------~ELL~~Ir~~~~IPVII-LSa~~d~e~----v~kAl~~GA~ 130 (663)
++.+.+.+. .+| .|-+.+.-|...| .++++.+++..++||++ ++..-+.+. +..+.++|++
T Consensus 110 ~~a~~~~~~--g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~G~d 187 (311)
T 1jub_A 110 AMLKKIQES--DFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQFPLT 187 (311)
T ss_dssp HHHHHHHHS--CCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTSCCC
T ss_pred HHHHHHHhc--CCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 444444443 378 8877775444321 46777777666889887 444333322 4555677887
Q ss_pred eEEe
Q 006044 131 DYLI 134 (663)
Q Consensus 131 dYLl 134 (663)
...+
T Consensus 188 ~i~v 191 (311)
T 1jub_A 188 YVNS 191 (311)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6654
No 321
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=20.22 E-value=63 Score=31.07 Aligned_cols=54 Identities=15% Similarity=0.079 Sum_probs=34.8
Q ss_pred ceEEEEecCCCCCC-------HHHHHHHHhccC-----CCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 80 FDVVLSDVHMPDMD-------GFKLLEHIGLEM-----DLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 80 pDLVILDI~MPdmD-------G~ELL~~Ir~~~-----~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
.|.|+++-..|+.+ +++.+++++... ++|+++.-+ -..+.+.+++++||+.++.
T Consensus 141 ~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GG-I~~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 141 VDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGG-VGPKNAYKVIEAGANALVA 206 (230)
T ss_dssp CSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESS-CCTTTHHHHHHHTCCEEEE
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECC-CCHHHHHHHHHcCCCEEEE
Confidence 68888887666433 445556665322 677665443 3456677788899988765
No 322
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=20.20 E-value=2.6e+02 Score=21.36 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=32.3
Q ss_pred CCcccccHHHHHHHHHHHHHhccCcccHHHHHHHhcCCCCCHHHHHHH
Q 006044 220 KPRVVWSVELHQQFVSAVNQLGIDKAVPKRILELMNVPGLTRENVASH 267 (663)
Q Consensus 220 KpRVvWTvELHrkFv~AVnqLGidKAvPKkILElMnVpgLTrenVASH 267 (663)
..+-.||.|=.+.++++|.+.|..+= +.|.+. +++-|..++..+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W--~~Ia~~--~~~Rt~~qcr~R 49 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDW--KFLASH--FPNRTDQQCQYR 49 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCH--HHHHHH--CSSSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCH--HHHHHH--ccCCCHHHHHHH
Confidence 34557999999999999999995332 467776 467777766554
No 323
>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1
Probab=20.19 E-value=22 Score=33.52 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=15.0
Q ss_pred CChhHHHHHHHhhcCCCCCCce-ecccchhhh
Q 006044 318 IPPQTLAALHAELLGRPTGNLV-TAVDQPALL 348 (663)
Q Consensus 318 ~~~~~~~~~~~~~~g~~~~~~~-~~~d~~~~~ 348 (663)
+|......+...++...+|-+- ..++.|+-|
T Consensus 46 LPke~~k~iPk~y~~~~~gt~rLLtE~EWR~L 77 (150)
T 1qb3_A 46 LPKAMLKVIPSDYFNSEVGTLRILTEDEWRGL 77 (150)
T ss_dssp CCHHHHHTSCGGGBCTTTSSBCCCCHHHHHHT
T ss_pred cCHHHHhhccccccccccccccCCCHHHHHHH
Confidence 4555555554455554444322 335555444
No 324
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=20.17 E-value=2.5e+02 Score=30.53 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=45.6
Q ss_pred HHHHHHHHHHcCCCceEEEEecCCCCCCH-HHHHHHHhcc-CCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 66 AAVALDILRERKGCFDVVLSDVHMPDMDG-FKLLEHIGLE-MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 66 g~eALelLre~k~~pDLVILDI~MPdmDG-~ELL~~Ir~~-~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
..+.++.+.+. .+|+|.+|........ +++++++++. +++|||+-.. ...+.+..+.++||+...+
T Consensus 256 ~~~~a~~~~~a--G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHT--TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHc--CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 34455555554 3999999887644333 5788888755 4888886333 4577788999999987755
No 325
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=20.09 E-value=3.7e+02 Score=24.14 Aligned_cols=67 Identities=18% Similarity=0.165 Sum_probs=43.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-eE-EEECCHHHHHHHHHHcCCCceEEEEecCCCC--CCHHHHHHHHh
Q 006044 34 LRVLVVDDDITCLRILEQMLRRCLY-NV-TTCSQAAVALDILRERKGCFDVVLSDVHMPD--MDGFKLLEHIG 102 (663)
Q Consensus 34 iRVLIVDDD~~~re~L~~lL~~~gy-~V-~tasng~eALelLre~k~~pDLVILDI~MPd--mDG~ELL~~Ir 102 (663)
-+|..||-++...+..++.+...+. .+ ....+..+.+..+. ...+|+|++|.-... .+-.++++.+.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p~~~~~~~~~~~l~~~~ 138 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPPYNVDSADVDAILAALG 138 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCCCCcchhhHHHHHHHHH
Confidence 4799999999999999888876553 33 35666666544322 235999999854332 12334555553
No 326
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=20.03 E-value=88 Score=29.58 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=33.8
Q ss_pred CceEEEEecCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecCCCHHHHHHHHhcCCCeEEe
Q 006044 79 CFDVVLSDVHMPDMDG-------FKLLEHIGLE-----MDLPVIMMSADGRVSAVMRGIRHGACDYLI 134 (663)
Q Consensus 79 ~pDLVILDI~MPdmDG-------~ELL~~Ir~~-----~~IPVIILSa~~d~e~v~kAl~~GA~dYLl 134 (663)
..|.|+++-..|+.+| ++-++.+++. .++|+++ ++--..+.+.++.+.||+..+.
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v-~GGI~~~~~~~~~~~Gad~vvv 197 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEV-DGGVDNKTIRACYEAGANVFVA 197 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE-ESSCCTTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEE-ECcCCHHHHHHHHHcCCCEEEE
Confidence 3688888776665443 3444555421 2566655 4444466677788889988754
Done!