Query 006046
Match_columns 663
No_of_seqs 87 out of 89
Neff 3.5
Searched_HMMs 46136
Date Thu Mar 28 17:34:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006046.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006046hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09746 Membralin: Tumour-ass 100.0 9.4E-90 2E-94 720.3 21.9 357 4-454 14-375 (375)
2 KOG2092 Uncharacterized conser 100.0 4.4E-59 9.6E-64 476.5 0.5 368 252-644 1-374 (381)
3 KOG2092 Uncharacterized conser 100.0 2.1E-42 4.6E-47 354.3 6.1 300 6-424 56-381 (381)
4 KOG4438 Centromere-associated 35.3 39 0.00084 38.4 3.7 42 6-47 385-431 (446)
5 COG4168 SapB ABC-type antimicr 28.7 3.4E+02 0.0073 29.7 9.0 113 393-521 76-213 (321)
6 PF04021 Class_IIIsignal: Clas 27.7 85 0.0018 23.0 3.2 25 21-45 2-26 (28)
7 PF12679 ABC2_membrane_2: ABC- 22.7 7.5E+02 0.016 24.4 10.9 28 413-440 172-199 (277)
8 KOG4220 Muscarinic acetylcholi 20.9 1.4E+03 0.03 26.9 13.0 124 468-597 184-313 (503)
9 PF12238 MSA-2c: Merozoite sur 19.3 2.6E+02 0.0057 29.1 6.0 26 468-493 93-119 (205)
10 PF04290 DctQ: Tripartite ATP- 16.8 1.9E+02 0.0041 26.0 3.9 30 15-44 54-83 (133)
No 1
>PF09746 Membralin: Tumour-associated protein; InterPro: IPR019144 Membralin is evolutionarily highly conserved, though it appears to represent a unique protein family. The protein appears to contain several transmembrane regions. In humans it is expressed in certain cancers, particularly ovarian cancers []. Membralin-like gene homologues have been identified in plants including grape, cotton and tomato [].
Probab=100.00 E-value=9.4e-90 Score=720.26 Aligned_cols=357 Identities=27% Similarity=0.444 Sum_probs=260.6
Q ss_pred cchHHHHHHHHhhhcChhhHhHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCcccccccccCCCCcccccccCCCCccc
Q 006046 4 EHTFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQKSYAPFDLNLNILLIKPGCSSEFAGIRMTEAQ 83 (663)
Q Consensus 4 ~~~f~rv~~~~~~~~~p~~r~~lEyi~L~~ai~~~~vl~~~h~nf~~~~~~~~~~~~~~~~~~ppgC~~e~~~~~~~~~~ 83 (663)
|-.|.||+.++||.+||++|++|||++|++|+++||+|+|||++|+|+ |..|++|+++ +|||+|
T Consensus 14 ha~f~r~a~~Yar~~p~~~Rr~iEf~~L~~Al~~~~iL~yIH~~F~rs---------------p~tCL~~~~~-~wpR~G 77 (375)
T PF09746_consen 14 HALFFRVALAYARLFPPPVRRFIEFIVLLKALFLFFILIYIHIAFSRS---------------PITCLDHVKD-DWPRDG 77 (375)
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------------chhHHHHhhc-cccccc
Confidence 346999999999999999999999999999999999999999999999 9999999999 699999
Q ss_pred eEEEEEeccCCCCCCCCCcccccccccccchhhhhhhchhccceeeccCCcccCCccCcCCCCCCCCCCccccccccccc
Q 006046 84 LIQIKISSAGLWSQNDSDSNVVDVTSVDNAINELEVSGKLALKFWRTDMEPVEHLAEGSVSSQSFKPTDSAVNKIDKEEA 163 (663)
Q Consensus 84 llqVkI~s~g~~~~~~~~s~~~d~~~~~~~~~~l~~~~~l~~~f~~~~~~~~e~~a~~~~~~~~~~~~~d~~~~~~~ee~ 163 (663)
|+||||.+| +|..++..+++.+. ++.....+- ++..+|++...+..+ .+.-++
T Consensus 78 IlRveI~~n-~~~~~i~~~~~~ee-~L~r~~qep-------------~s~siEpsTteeelt--~el~~~---------- 130 (375)
T PF09746_consen 78 ILRVEIVRN-LESKNIFQQYYDEE-SLLRNVQEP-------------GSYSIEPSTTEEELT--TELFQN---------- 130 (375)
T ss_pred eeEEEEecC-CCccchhhhhhhhc-chhhhhccc-------------cccCcCccccchhhh--Hhhhhc----------
Confidence 999999996 57777755444322 221111110 000011111000000 000000
Q ss_pred ccccccChhHhhhhhhhcccchhcccchhhhhhhHHhhhhhHhhhhhcccccccCcccccccccccchhhhhhHHhhhcc
Q 006046 164 RNSFALSAKEAFKSAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLYLDRIHSYAVQWLENRT 243 (663)
Q Consensus 164 ~~~~~~s~ke~~kaav~~~g~k~~~~ls~~~~~~~~i~~~f~klw~i~g~~~~~d~pk~~~~~~~d~l~~~~v~~~e~~~ 243 (663)
. +.+.....-.++|++.-+. ...-+..+.....|. .. +.+..++..
T Consensus 131 ---~------s~kl~~~~~~~~~~~~~~~------------~~~~d~~~~~~~~~~------------~~-~~~~~~~~~ 176 (375)
T PF09746_consen 131 ---S------SIKLESDLEPSFLSSDSSL------------NNTFDEDNISDTFDF------------EE-IMQLKNKVW 176 (375)
T ss_pred ---c------cccccccccccccCCcccc------------ccccccccccccccc------------ch-hhcccccCC
Confidence 0 0000000000000000000 000000000000111 11 111111222
Q ss_pred ccCCCcEEEeccceeeccCcccccccCceEEEEEeCC-CCCCCcchHHHHHHHhhcCchHHHHhhhh----ccCCceeeE
Q 006046 244 KAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISA-QHPCFGNRWQQLLINRFVGYDTILMNSLL----HTPGQGYLY 318 (663)
Q Consensus 244 k~fEp~YeYSlEyGfLrLse~aR~rhNIpt~~VtLd~-~~~CFGd~~srlLL~~FlGYDdILmNSLk----~e~gkGYLr 318 (663)
...||+||||+||||||||+++|++|||||++|+||+ +|+||||+|+|++|++|+||||++|+|+| +++||||||
T Consensus 177 ~~~~y~veYsleyG~LrLs~~~r~~~nI~~~~v~ldp~~~~CfG~~~~r~ll~~f~GYd~~lm~s~k~la~~e~~~GyL~ 256 (375)
T PF09746_consen 177 PQDEYIVEYSLEYGFLRLSEATRQRHNIPVMVVTLDPAKDQCFGDRFSRLLLDEFLGYDDILMSSLKTLAENEDNKGYLR 256 (375)
T ss_pred cccceeEEeehhcchhcCCHHHHhhcCCeEEEEEECCCCCCccCchHHHHhhhhhcCccHHHHHHHHHHhcCCCCceeee
Confidence 3357888999999999999999999999999999996 99999999999999999999999999999 478999999
Q ss_pred ecccCeEEeeccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhhhccccchhHH
Q 006046 319 NCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLI 398 (663)
Q Consensus 319 Nv~TgE~Yrlv~~~~~~~~~ar~~sylv~k~~VlimsLFvfFtfT~sVSfLLReSq~rifvFiVdL~~~~r~~~P~a~Ll 398 (663)
|++|||||||+++|.. +| ++|++ ++|+|++||++|||||||||||||+|||||+||++++.|++
T Consensus 257 n~~t~e~y~fv~~~~~----~r-~sy~~--------a~~~m~~ft~svs~lLR~s~~qif~fiv~ll~~~~~~~~~~--- 320 (375)
T PF09746_consen 257 NVVTGEHYRFVSMWWM----AR-SSYLA--------AFFVMLIFTFSVSMLLRYSHHQIFVFIVDLLQMLEHNLPIF--- 320 (375)
T ss_pred ecccccceehhhhhhh----hc-cHHHH--------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhcCccc---
Confidence 9999999999988632 23 45654 67888999999999999999999999999999998887632
Q ss_pred HHHHHHHhhhhHhHhHHHHHHHhhcccchhHHHHHHHHHHhhhhhceeeccccccc
Q 006046 399 FVHVIESLVFVPIMIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMK 454 (663)
Q Consensus 399 ~~hVI~sLVFVpvmIGM~afMsEFFnD~~lAFyVILiVWladqFdaI~~RT~iSkr 454 (663)
.|++..|.+||+||||+|||+|||||++|||||||+||+|||||+|||||++|||
T Consensus 321 -~p~a~llt~il~lvgm~~~m~eff~d~~~af~vil~vw~~d~~~~i~c~t~~~~r 375 (375)
T PF09746_consen 321 -FPAAPLLTVILALVGMEAIMSEFFNDTTTAFYVILIVWLADQYDAICCHTPISKR 375 (375)
T ss_pred -cccceeeeeehhhHHHHHHHHHHhcchhHHHHHHHHHHHHhhccEEEecCccCCC
Confidence 2556666677888899999999999999999999999999999999999999997
No 2
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=4.4e-59 Score=476.50 Aligned_cols=368 Identities=57% Similarity=0.874 Sum_probs=319.2
Q ss_pred EeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhhhhccCCceeeEecccCeEEeeccc
Q 006046 252 YTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNSLLHTPGQGYLYNCQTKEFYNLSYA 331 (663)
Q Consensus 252 YSlEyGfLrLse~aR~rhNIpt~~VtLd~~~~CFGd~~srlLL~~FlGYDdILmNSLk~e~gkGYLrNv~TgE~Yrlv~~ 331 (663)
|.+|+|+..+|++++-+||| +-++.+.++++|||++|++++++.++||||+|++++.++-+.||.| .+|.|.-||
T Consensus 1 ~~~~~~~~~~P~~~~p~~N~-~~~~~~~ar~P~~pn~~q~~~~N~lv~~rdrlfhal~~~~a~~Ys~-~~~~~frrl--- 75 (381)
T KOG2092|consen 1 YTMEKGYFLLPDEAKPRHNI-TANVSISARHPCFPNRWQQLLINRLVGYRDRLFHALQNSAAQGYSY-YQTREFRRL--- 75 (381)
T ss_pred CchhhcccCCCCCCCCCCCC-CCCCCcccCCCCCCchhhhhcccccccHHHHHHHHHHHHHhhhhhh-ccCHHHHhc---
Confidence 57899999999999999999 6889999999999999999999999999999999999999999999 888887544
Q ss_pred cCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHHHhhhhhccccchhHHHHHHHHHhhhhHh
Q 006046 332 QEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQLQHHAQHRLPTFQLIFVHVIESLVFVPI 411 (663)
Q Consensus 332 ~~~~~~~ar~~sylv~k~~VlimsLFvfFtfT~sVSfLLReSq~rifvFiVdL~~~~r~~~P~a~Ll~~hVI~sLVFVpv 411 (663)
+++++-++.|++.||+++|+++|++ +++.+++.||+++.||..|.|++++|..++.|++.++.+|++.++||+|+
T Consensus 76 ---~egs~lf~a~lvl~~l~~ihi~F~r--sp~scl~~~r~~w~R~gi~rVev~~H~s~r~p~Fl~f~~~~~~~~vF~~~ 150 (381)
T KOG2092|consen 76 ---PEGSALFGAYLVLKCLVLIHILFVR--SPMSCLFTLRETWTRMGIFRVEVQHHASHRLPTFLLFFVHVIESLVFVPI 150 (381)
T ss_pred ---cchHHHHHHHHHHHHHHHHHHHhhc--CchHHHHHHHhhhhhheeEEEEEEecchhcchHHHHHHhhhcccccccch
Confidence 5677888999999999999999987 78999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHhhcccchhHHHHHHHHHHhhhhhceeecccccccchhHHHH--HHHHHhhheeeeccccchhHHHHHHHHH
Q 006046 412 MIGILFFLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFL--LYFLVFHIYFFSYAYGFSYMALGTAAAF 489 (663)
Q Consensus 412 mIGM~afMsEFFnD~~lAFyVILiVWladqFdaI~~RT~iSkrywPRfFy--LYf~~Fh~Yfysy~ygFSyLAL~ts~lF 489 (663)
+||+..+++||++|+..+||+++.+|+|+.|.+++.||+++|+|+||+|+ +|.+.||+|||+|.+|++|++..++..+
T Consensus 151 aI~i~s~l~~~~~e~~e~~m~~~~~~~~~~f~ld~e~~~i~k~~~p~e~Lnd~~e~~fh~~~f~~~~g~~Y~veyt~~yg 230 (381)
T KOG2092|consen 151 AIGILSFLFEFYDEQLEAFMVLVLVWLCELFTLDSERTPISKKFFPREFLNDLYELVFHIYFFSYAYGFSYLVEYTTAYG 230 (381)
T ss_pred hhhHHHhhHHHhcccHHHHHHHHHHHHHHheeeecccccccCCCCcHHHhcchhhcccchhhhhhccCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHhhcchhHHHHHHH-HHHHHhhcCCCccccccceeccceeeeecccCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 006046 490 VQHLILYFWNHFEVPALQRFIQ-NRRTQLQQQPDFHITSSTILASTLHITRLNTRNPSLPNTDATSGPGLRPGSNQAMPP 568 (663)
Q Consensus 490 i~HsMLyF~h~fElPal~r~~~-~r~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 568 (663)
++|+.+|||+|+|+|+++++++ +|+...+|+|.+++++++++++|+|++ +|....+..+.+.. -+...+..-...+
T Consensus 231 ~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~t-l~~~a~N~~~~G~l--hn~q~~ehy~Fva 307 (381)
T KOG2092|consen 231 MLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHIT-LNRTARNRTPSGPL--HNTQNTEHYSFVA 307 (381)
T ss_pred HHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHH-HHHHHhccCCCCcc--ccccccceEEEee
Confidence 9999999999999999999999 777889999999999999999999999 77655444332211 1122333333334
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCC-CCCCCCCCCCCchhhH--HHHHHhcCCCccchhhhhhhhhhhhcc
Q 006046 569 TNRVDAPGPERSENNNPDRVGNTMEIPGQPDLQ-QPETGPNPGSMNSFSS--LLLWILGGASSEGLNSFLSMFRDVREQ 644 (663)
Q Consensus 569 ~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~-~~~~~~~~~~~~~~~s--~~~w~lg~~~~~~~~s~~~~frd~r~~ 644 (663)
||.|+. +-.+.......| ..|..+-+| +. +.|-+|+| |++|+||||+++|++++++||+|+++.
T Consensus 308 -~~~g~a---sYl~a~a~m~if--T~~~smllrysh------hqifvFi~dll~m~el~~a~~~p~aplltv~lalvg~ 374 (381)
T KOG2092|consen 308 -DGGGVA---SYLEAQAEMEIF--TVPASMLLRYSH------HQIFVFISDLLLMWELGGASSEPLAPLLTVFLALVGE 374 (381)
T ss_pred -ccccHH---HHHHHhhhHhhe--eccccccccccc------cceeehHHHHHHHHHhCCCCCcccchHHHHHHHHhCc
Confidence 333331 111111222233 233344444 44 78999999 999999999999999999999999973
No 3
>KOG2092 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.1e-42 Score=354.27 Aligned_cols=300 Identities=22% Similarity=0.247 Sum_probs=211.7
Q ss_pred hHHHHHHHHhhhcChhhHhHHHHHHHHHHHHHHHHHHhhhhhhhhccccCCcccccccccCCCCcccccccCCCCccceE
Q 006046 6 TFIRVQERFSRVLTPRVRAYLEYIYLFIAITLFCVLVVMHANYVQQKSYAPFDLNLNILLIKPGCSSEFAGIRMTEAQLI 85 (663)
Q Consensus 6 ~f~rv~~~~~~~~~p~~r~~lEyi~L~~ai~~~~vl~~~h~nf~~~~~~~~~~~~~~~~~~ppgC~~e~~~~~~~~~~ll 85 (663)
.+.|+...+|...||.-|+..|.-.||+|..++.+|++||++|++. |.+|++++++ .|+|.||+
T Consensus 56 l~~~~a~~Ys~~~~~~frrl~egs~lf~a~lvl~~l~~ihi~F~rs---------------p~scl~~~r~-~w~R~gi~ 119 (381)
T KOG2092|consen 56 LQNSAAQGYSYYQTREFRRLPEGSALFGAYLVLKCLVLIHILFVRS---------------PMSCLFTLRE-TWTRMGIF 119 (381)
T ss_pred HHHHHhhhhhhccCHHHHhccchHHHHHHHHHHHHHHHHHHHhhcC---------------chHHHHHHHh-hhhhheeE
Confidence 5678888889999999999999999999999999999999999999 9999999999 59999999
Q ss_pred EEEEeccCCC-CCCCCCcccccc-cccccchhhhhhhchh-------------ccceeeccCCcccCCccCcCCCCCCCC
Q 006046 86 QIKISSAGLW-SQNDSDSNVVDV-TSVDNAINELEVSGKL-------------ALKFWRTDMEPVEHLAEGSVSSQSFKP 150 (663)
Q Consensus 86 qVkI~s~g~~-~~~~~~s~~~d~-~~~~~~~~~l~~~~~l-------------~~~f~~~~~~~~e~~a~~~~~~~~~~~ 150 (663)
|||.-+--+. +-..-. .-.++ ++..-..=..|++.++ +..-|-. |+-.-++++.
T Consensus 120 rVev~~H~s~r~p~Fl~-f~~~~~~~~vF~~~aI~i~s~l~~~~~e~~e~~m~~~~~~~~-----~~f~ld~e~~----- 188 (381)
T KOG2092|consen 120 RVEVQHHASHRLPTFLL-FFVHVIESLVFVPIAIGILSFLFEFYDEQLEAFMVLVLVWLC-----ELFTLDSERT----- 188 (381)
T ss_pred EEEEEecchhcchHHHH-HHhhhcccccccchhhhHHHhhHHHhcccHHHHHHHHHHHHH-----Hheeeecccc-----
Confidence 9999862111 000000 00000 0000000011111111 1111111 0000011100
Q ss_pred CCcccccccccccccccccChhHhhh---hhhhcccchhcccchhhhhhhHHhhhhhHhhhhhcccccccCccccccccc
Q 006046 151 TDSAVNKIDKEEARNSFALSAKEAFK---SAIIHFGKKWYRRLSFVWRQAMQILRNFQKLWNIAGIHLNLDVPKLMHLLY 227 (663)
Q Consensus 151 ~~d~~~~~~~ee~~~~~~~s~ke~~k---aav~~~g~k~~~~ls~~~~~~~~i~~~f~klw~i~g~~~~~d~pk~~~~~~ 227 (663)
++.| +-+..|.++ -++-| .-|.+.
T Consensus 189 ------~i~k-------~~~p~e~Lnd~~e~~fh--------------------~~~f~~-------------------- 215 (381)
T KOG2092|consen 189 ------PISK-------KFFPREFLNDLYELVFH--------------------IYFFSY-------------------- 215 (381)
T ss_pred ------cccC-------CCCcHHHhcchhhcccc--------------------hhhhhh--------------------
Confidence 1100 001111110 00000 001111
Q ss_pred ccchhhhhhHHhhhccccCCCcEEEeccceeeccCcccccccCceEEEEEeCCCCCCCcchHHHHHHHhhcCchHHHHhh
Q 006046 228 LDRIHSYAVQWLENRTKAFEPTYLYTMEKGYFLLPEADKSRHNIRTFNISISAQHPCFGNRWQQLLINRFVGYDTILMNS 307 (663)
Q Consensus 228 ~d~l~~~~v~~~e~~~k~fEp~YeYSlEyGfLrLse~aR~rhNIpt~~VtLd~~~~CFGd~~srlLL~~FlGYDdILmNS 307 (663)
.+-++|.+||+++||+|||++..|+|++||+++++||+++|||||+..|++|+.|+||||++|.+
T Consensus 216 ---------------~~g~~Y~veyt~~yg~lrL~~~fr~r~~IP~~~~~ldt~~Qcfgdq~~rl~i~~f~gy~dtl~~t 280 (381)
T KOG2092|consen 216 ---------------AYGFSYLVEYTTAYGMLRLILYFRNRFEIPALQRFLDTSRQCFGDQHPRLHITSFTGYADTLHIT 280 (381)
T ss_pred ---------------ccCchHHHHHHHHHHHHhccHHHHHhcCCceEEEEecchhhhhhhhhhhHHHHHHhhHHHHHHHH
Confidence 12356778999999999999999999999999999999999999999999999999999999999
Q ss_pred hh----ccCCceeeEecccCeEEeeccccCCCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhhhhHHHHHHH
Q 006046 308 LL----HTPGQGYLYNCQTKEFYNLSYAQEPPEGPAKFGDYLVTKCGVLMMSLFVFFTTTMSVSFTLRETQARMLKFTVQ 383 (663)
Q Consensus 308 Lk----~e~gkGYLrNv~TgE~Yrlv~~~~~~~~~ar~~sylv~k~~VlimsLFvfFtfT~sVSfLLReSq~rifvFiVd 383 (663)
++ |..++||++|.+|+|||+|+..+. ++ .+|+.+.. +| .+||+.+||+|||+|||||+||+|
T Consensus 281 l~~~a~N~~~~G~lhn~q~~ehy~Fva~~~-----g~-asYl~a~a---~m-----~ifT~~~smllryshhqifvFi~d 346 (381)
T KOG2092|consen 281 LNRTARNRTPSGPLHNTQNTEHYSFVADGG-----GV-ASYLEAQA---EM-----EIFTVPASMLLRYSHHQIFVFISD 346 (381)
T ss_pred HHHHHhccCCCCccccccccceEEEeeccc-----cH-HHHHHHhh---hH-----hheeccccccccccccceeehHHH
Confidence 87 467899999999999999997653 33 58886332 33 456899999999999999999999
Q ss_pred Hhhhh----hccccchhHHHHHHHHHhhhhHhHhHHHHHHHhhcc
Q 006046 384 LQHHA----QHRLPTFQLIFVHVIESLVFVPIMIGILFFLFEFYD 424 (663)
Q Consensus 384 L~~~~----r~~~P~a~Ll~~hVI~sLVFVpvmIGM~afMsEFFn 424 (663)
|+++. ....|++||+ +|+++|| ||+ |+|||+
T Consensus 347 ll~m~el~~a~~~p~apll--tv~lalv------g~~--~aefF~ 381 (381)
T KOG2092|consen 347 LLLMWELGGASSEPLAPLL--TVFLALV------GED--EAEFFA 381 (381)
T ss_pred HHHHHHhCCCCCcccchHH--HHHHHHh------Cch--hhhhcC
Confidence 99875 4456999986 7888887 999 999996
No 4
>KOG4438 consensus Centromere-associated protein NUF2 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.25 E-value=39 Score=38.43 Aligned_cols=42 Identities=26% Similarity=0.400 Sum_probs=33.3
Q ss_pred hHHHHHHHHh-----hhcChhhHhHHHHHHHHHHHHHHHHHHhhhhh
Q 006046 6 TFIRVQERFS-----RVLTPRVRAYLEYIYLFIAITLFCVLVVMHAN 47 (663)
Q Consensus 6 ~f~rv~~~~~-----~~~~p~~r~~lEyi~L~~ai~~~~vl~~~h~n 47 (663)
+-.++.+-.. ..+-+.+|...||-+.++||+++|.|..||++
T Consensus 385 ~~~kie~~~~~ik~~e~~l~~~~~r~e~~~~i~aI~l~~~llk~HV~ 431 (446)
T KOG4438|consen 385 KVKKIEEKNEEIKKIELFLEIARGREELESQIVAITLECILLKMHVE 431 (446)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555553 23348899999999999999999999999975
No 5
>COG4168 SapB ABC-type antimicrobial peptide transport system, permease component [Defense mechanisms]
Probab=28.69 E-value=3.4e+02 Score=29.67 Aligned_cols=113 Identities=23% Similarity=0.372 Sum_probs=70.7
Q ss_pred cchhHHHHHHHHHhhh-hHhHhHHHH-HHHhhcccchhHHHHHHHHHHhhhhhceeecccccccchhHHHHHHHHHhhhe
Q 006046 393 PTFQLIFVHVIESLVF-VPIMIGILF-FLFEFYDDQLLAFLVLILVWLCELFTLISVRTPISMKFFPRFFLLYFLVFHIY 470 (663)
Q Consensus 393 P~a~Ll~~hVI~sLVF-VpvmIGM~a-fMsEFFnD~~lAFyVILiVWladqFdaI~~RT~iSkrywPRfFyLYf~~Fh~Y 470 (663)
|+..|-+...+++++| .|+ ||++ .+++=+-|+.+.+.-.+ -|++ --||.-...+|+++.|..
T Consensus 76 aT~ELC~~af~lal~~GiPl--G~iagv~~~kw~d~~is~~s~~------G~Si--------PvFWlAl~ll~ffslh~~ 139 (321)
T COG4168 76 ATMELCFLAFGLALIVGIPL--GMIAGVTRHKWLDKLISAISLL------GFSI--------PVFWLALLLLLFFSLHLG 139 (321)
T ss_pred cHHHHHHHHHHHHHHHcccH--HHHHHhhhhhHHHHHHHHHHHh------ccCc--------hHHHHHHHHHHHHHHhcc
Confidence 3455656667777665 454 7775 55666666665554221 1222 137888889999999999
Q ss_pred eeeccccch---------hHHHHHHHH------------HHHHHHHHHHhhcchhH--HHHHHHHHHHHhhcCC
Q 006046 471 FFSYAYGFS---------YMALGTAAA------------FVQHLILYFWNHFEVPA--LQRFIQNRRTQLQQQP 521 (663)
Q Consensus 471 fysy~ygFS---------yLAL~ts~l------------Fi~HsMLyF~h~fElPa--l~r~~~~r~~~~~~~~ 521 (663)
.+.--+||. ++|++-.|+ .+||+.|=..--=-.|. +-|.+++|-+.+.+|-
T Consensus 140 ~~pv~GrydLLY~ikpiTGfalIDaw~s~spyRt~~~qs~lqHl~LP~lvL~iaPTtevir~mr~s~~~Vl~qN 213 (321)
T COG4168 140 WLPVSGRYDLLYEIKPITGFALIDAWLSDSPYRTEMIQSAIQHLILPTLVLSVAPTTEVIRLMRQSTEEVLNQN 213 (321)
T ss_pred ceecccceeeeeeeccccccHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhh
Confidence 999988984 788888886 35566543322212232 3477777766665553
No 6
>PF04021 Class_IIIsignal: Class III signal peptide; InterPro: IPR007166 This entry represents an amino terminal motif QXSXEXXXL thought to be part of a class III signal sequence for a family of archaeal proteins. The Q residue is the +1 residue of the signal peptidase cleavage site []. Two proteins containing this motif are cleaved by a type IV pilin-like signal peptidase.
Probab=27.69 E-value=85 Score=23.01 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=19.4
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHhhh
Q 006046 21 RVRAYLEYIYLFIAITLFCVLVVMH 45 (663)
Q Consensus 21 ~~r~~lEyi~L~~ai~~~~vl~~~h 45 (663)
|-..++||+.|+.++++..+.+..+
T Consensus 2 rGQ~SlE~~ili~~vlv~~~i~~~~ 26 (28)
T PF04021_consen 2 RGQISLEFIILIAAVLVIAIIVIYY 26 (28)
T ss_pred ccHHhHHHHHHHHHHHHHHHHHHhc
Confidence 3456899999999998888776543
No 7
>PF12679 ABC2_membrane_2: ABC-2 family transporter protein
Probab=22.67 E-value=7.5e+02 Score=24.44 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=21.1
Q ss_pred hHHHHHHHhhcccchhHHHHHHHHHHhh
Q 006046 413 IGILFFLFEFYDDQLLAFLVLILVWLCE 440 (663)
Q Consensus 413 IGM~afMsEFFnD~~lAFyVILiVWlad 440 (663)
+++-.+++-+++++..|.-+.+.+|+.=
T Consensus 172 ~sl~~~~S~~~~~~~~a~~~~~~~~~~~ 199 (277)
T PF12679_consen 172 ISLGLLISSLFRSSASAILASLGLLFLL 199 (277)
T ss_pred HHHHHHHHHHHCcHHHHHHHHHHHHHHH
Confidence 5666777888898888888777777544
No 8
>KOG4220 consensus Muscarinic acetylcholine receptor [Signal transduction mechanisms]
Probab=20.88 E-value=1.4e+03 Score=26.89 Aligned_cols=124 Identities=16% Similarity=0.195 Sum_probs=55.2
Q ss_pred hheeeeccccchhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHhhcCCCccccccceecccee----eeecccC
Q 006046 468 HIYFFSYAYGFSYMALGTAAAFVQHLILYFWNHFEVPALQRFIQNRRTQLQQQPDFHITSSTILASTLH----ITRLNTR 543 (663)
Q Consensus 468 h~Yfysy~ygFSyLAL~ts~lFi~HsMLyF~h~fElPal~r~~~~r~~~~~~~~~~~~~~~~~~~s~~~----~~~~~~~ 543 (663)
|+=|++=|+=--+-|..+-++=..-+.+.||+=| |--++|..++..-+.-....+++--+..| ..+-+.+
T Consensus 184 ~iQFlsnp~iTfGTAiAAFYlPVtiM~~LY~rIy------ret~kR~k~~~~lq~s~~~~~~~~~~~~~~~~~~~~s~r~ 257 (503)
T KOG4220|consen 184 YIQFLSNPAITFGTAIAAFYLPVTIMTILYWRIY------RETRKRQKELAKLQASLPSFSAIKLSPESPKGDSKSSGRS 257 (503)
T ss_pred EEEeecCceeehhHHHHHHHhhHHHHHHHHHHHH------HHHHHHHHhhhhcccccccccccccCcccccccccCCCCC
Confidence 6777775554445555555555555666677655 23334433333333322223444334444 2233333
Q ss_pred CCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCccCCCC
Q 006046 544 NPSLPNT-DATSGPGLRPGSNQAMPPTNRVDAPGP-ERSENNNPDRVGNTMEIPGQ 597 (663)
Q Consensus 544 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~n~~~~~~~ 597 (663)
.|+.++. +...+++.+.+..++.+.++..-.... +..+..-.+..++|+..|+.
T Consensus 258 ~p~~~~~~~~~~~~~~~~~k~ps~~~~~~~~~s~~edsd~~~~~s~~~s~~~~~~s 313 (503)
T KOG4220|consen 258 SPSEEGKREPLTNGCISNSKAPSLTPTESWKPSEKEDSDESSSESLTSSPLERPGS 313 (503)
T ss_pred CCccccccccCCCCccccccCcccCCccCCCCccccccccccccccccCCcccccc
Confidence 3443333 223333444444445555332211111 22222223456777777754
No 9
>PF12238 MSA-2c: Merozoite surface antigen 2c; InterPro: IPR021060 This family of proteins are restricted to the apicomplexan Babesia bovis. Proteins in this entry are typically between 263 and 318 amino acids in length and plasma membrane glycoproteins. These antigens present on the merozoite surface (MSA) and are involved in the parasite invasion of the bovine erythrocyte. MSA-2c has been suggested as a possible antigen for a vaccine candidate [].
Probab=19.34 E-value=2.6e+02 Score=29.15 Aligned_cols=26 Identities=12% Similarity=0.001 Sum_probs=14.7
Q ss_pred hheeeeccc-cchhHHHHHHHHHHHHH
Q 006046 468 HIYFFSYAY-GFSYMALGTAAAFVQHL 493 (663)
Q Consensus 468 h~Yfysy~y-gFSyLAL~ts~lFi~Hs 493 (663)
|||==-..+ .|..|+=+|-..+-..+
T Consensus 93 hIy~~d~~v~d~~~lv~~ck~Fl~~~s 119 (205)
T PF12238_consen 93 HIYKEDSEVKDYNGLVKFCKDFLDSES 119 (205)
T ss_pred hccCcccccccHHHHHHHHHHHhcccc
Confidence 665544555 55566666665555544
No 10
>PF04290 DctQ: Tripartite ATP-independent periplasmic transporters, DctQ component; InterPro: IPR007387 The function of the members of this family is unknown, but DctQ homologues are invariably found in the tripartite ATP-independent periplasmic transporters [].
Probab=16.76 E-value=1.9e+02 Score=25.96 Aligned_cols=30 Identities=30% Similarity=0.491 Sum_probs=24.1
Q ss_pred hhhcChhhHhHHHHHHHHHHHHHHHHHHhh
Q 006046 15 SRVLTPRVRAYLEYIYLFIAITLFCVLVVM 44 (663)
Q Consensus 15 ~~~~~p~~r~~lEyi~L~~ai~~~~vl~~~ 44 (663)
.+.+||+.|+.++.+..+.+++.+.++++-
T Consensus 54 ~~~l~~~~~~~~~~i~~~~~~~~~~~l~~~ 83 (133)
T PF04290_consen 54 YDRLPPRLRRILDIIASLLILVFFAVLAWY 83 (133)
T ss_pred HhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467799999999999988877777666653
Done!