Query 006046
Match_columns 663
No_of_seqs 87 out of 89
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 14:31:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006046.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006046hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kv5_A FST, putative uncharact 5.1 4.1E+02 0.014 19.6 2.3 17 407-423 8-24 (33)
2 2v75_A Nuclear polyadenylated 4.5 4.7E+02 0.016 23.5 2.8 27 8-34 12-40 (104)
3 2pbi_A Regulator of G-protein 4.5 3.1E+02 0.01 29.6 1.9 55 282-339 49-118 (424)
4 1qys_A TOP7; alpha-beta, novel 4.0 67 0.0023 28.0 -2.9 64 240-303 11-79 (106)
5 1vf5_H Protein PET N; photosyn 4.0 5E+02 0.017 18.7 2.0 12 361-372 14-25 (29)
6 1q90_N Cytochrome B6F complex 3.9 5.1E+02 0.018 18.9 2.0 13 360-372 15-27 (31)
7 2k21_A Potassium voltage-gated 3.8 6.4E+02 0.022 23.7 3.2 19 351-369 57-75 (138)
8 2ww9_C Protein transport prote 3.8 5.3E+02 0.018 22.6 2.5 19 28-46 62-80 (87)
9 1e0n_A Hypothetical protein; Y 3.7 4.8E+02 0.016 17.8 1.8 16 310-325 7-22 (27)
10 3n57_C Atrial natriuretic fact 3.4 2.7E+02 0.0093 19.9 0.3 11 281-291 4-14 (28)
No 1
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=5.10 E-value=4.1e+02 Score=19.65 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=12.7
Q ss_pred hhhHhHhHHHHHHHhhc
Q 006046 407 VFVPIMIGILFFLFEFY 423 (663)
Q Consensus 407 VFVpvmIGM~afMsEFF 423 (663)
+.+|+.||++--|++-.
T Consensus 8 IIaPivVGvvl~L~d~W 24 (33)
T 2kv5_A 8 VIAPIFVGLVLEMISRV 24 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44789999988776654
No 2
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=4.54 E-value=4.7e+02 Score=23.53 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=20.5
Q ss_pred HHHHHHHh--hhcChhhHhHHHHHHHHHH
Q 006046 8 IRVQERFS--RVLTPRVRAYLEYIYLFIA 34 (663)
Q Consensus 8 ~rv~~~~~--~~~~p~~r~~lEyi~L~~a 34 (663)
.=|.++|+ +-++-.+.-+-|||+|++.
T Consensus 12 ~ivaekL~~~~NF~EDv~YVAEyIvlLis 40 (104)
T 2v75_A 12 VIVAEKLAGIPNFNEDIKYVAEYIVLLIV 40 (104)
T ss_dssp HHHHHHHTTSTTCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccccCccccHHHHHHHhheeee
Confidence 34678886 3488888889999998863
No 3
>2pbi_A Regulator of G-protein signaling 9; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=4.50 E-value=3.1e+02 Score=29.60 Aligned_cols=55 Identities=20% Similarity=0.309 Sum_probs=35.1
Q ss_pred CCCC-cchHHHHHHHhhcCchHHHHhhhhcc---CCceeeEeccc---------CeEEeec--cccCCCCCCc
Q 006046 282 HPCF-GNRWQQLLINRFVGYDTILMNSLLHT---PGQGYLYNCQT---------KEFYNLS--YAQEPPEGPA 339 (663)
Q Consensus 282 ~~CF-Gd~~srlLL~~FlGYDdILmNSLk~e---~gkGYLrNv~T---------gE~Yrlv--~~~~~~~~~a 339 (663)
..|| |..+..+|++++ +.|+ --++.-. -..||++.+.. +-.|||. |.|.+..|.+
T Consensus 49 p~~F~Gsd~V~WL~~~~-~~~~--~EA~~lg~~L~~~Gyi~~v~d~~~~~fk~d~~~Yrfq~py~wps~~w~~ 118 (424)
T 2pbi_A 49 PHAMTGGDVLQWITQRL-WISN--LEAQNLGNFIVKYGYIYPLQDPKNLILKPDSSLYRFQTPYFWPTQQWPA 118 (424)
T ss_dssp CCCEEHHHHHHHHHHHH-TCCH--HHHHHHHHHHHHTTSEEESSSTTCCSCCSSSCEEEECCGGGSCCSSCCC
T ss_pred CCccccHHHHHHHHHcC-CCCh--HHHHHHHHHHHHCCCEEeCCccccccccCCCeeEEeCCcccCcccCCCc
Confidence 4899 999999999988 5665 2333211 24788887754 4578886 3444343433
No 4
>1qys_A TOP7; alpha-beta, novel fold, de novo protein; 2.50A {Computationally designed sequence} SCOP: k.41.1.1
Probab=4.00 E-value=67 Score=28.05 Aligned_cols=64 Identities=25% Similarity=0.405 Sum_probs=38.2
Q ss_pred hhccccCCCcEEEeccceeeccCc---ccccccCceEEEEEeCCCCCCCcchHHHHHHHhh--cCchHH
Q 006046 240 ENRTKAFEPTYLYTMEKGYFLLPE---ADKSRHNIRTFNISISAQHPCFGNRWQQLLINRF--VGYDTI 303 (663)
Q Consensus 240 e~~~k~fEp~YeYSlEyGfLrLse---~aR~rhNIpt~~VtLd~~~~CFGd~~srlLL~~F--lGYDdI 303 (663)
++..|.|+|+|--..|..+-..-. +.-.+.+-.-+.|+|.++.+--.++|...+++-| +||.+|
T Consensus 11 ddngknfdytytvtteselqkvlnelmdyikkqgakrvrisitartkkeaekfaailikvfaelgyndi 79 (106)
T 1qys_A 11 DDNGKNFDYTYTVTTESELQKVLNELMDYIKKQGAKRVRISITARTKKEAEKFAAILIKVFAELGYNDI 79 (106)
T ss_dssp ECSSCEEEEEEEESSSSHHHHHHHHHHHHHHHHCCSEEEEEEECSSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCcccceEEEEeeHHHHHHHHHHHHHHHHhcCCcEEEEEEEecchhHHHHHHHHHHHHHHHhCCcce
Confidence 456678888887666653321111 1112234444556666666666778888888766 789875
No 5
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=3.96 E-value=5e+02 Score=18.69 Aligned_cols=12 Identities=17% Similarity=0.188 Sum_probs=8.2
Q ss_pred HHHHHhHHhhhh
Q 006046 361 TTTMSVSFTLRE 372 (663)
Q Consensus 361 tfT~sVSfLLRe 372 (663)
+||.++|++.+.
T Consensus 14 vftfSlslVVWG 25 (29)
T 1vf5_H 14 VFTWSIAMVVWG 25 (29)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhheeeeEEEEe
Confidence 446688887764
No 6
>1q90_N Cytochrome B6F complex subunit PETN; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.27.1
Probab=3.85 E-value=5.1e+02 Score=18.89 Aligned_cols=13 Identities=15% Similarity=0.207 Sum_probs=8.6
Q ss_pred HHHHHHhHHhhhh
Q 006046 360 FTTTMSVSFTLRE 372 (663)
Q Consensus 360 FtfT~sVSfLLRe 372 (663)
.+||.++|++.+.
T Consensus 15 vvfTfSlslVVWG 27 (31)
T 1q90_N 15 VMFSFSLSLVVWG 27 (31)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHhheeeEEEEEe
Confidence 3446688887664
No 7
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=3.78 E-value=6.4e+02 Score=23.70 Aligned_cols=19 Identities=26% Similarity=0.681 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHhHHh
Q 006046 351 VLMMSLFVFFTTTMSVSFT 369 (663)
Q Consensus 351 VlimsLFvfFtfT~sVSfL 369 (663)
.++|.+|-||+..+.+|++
T Consensus 57 L~vmgffgff~~GImLsYi 75 (138)
T 2k21_A 57 LMVLGFFGFFTLGIMLSYI 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4678889888887777764
No 8
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=3.78 E-value=5.3e+02 Score=22.55 Aligned_cols=19 Identities=16% Similarity=0.574 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHhhhh
Q 006046 28 YIYLFIAITLFCVLVVMHA 46 (663)
Q Consensus 28 yi~L~~ai~~~~vl~~~h~ 46 (663)
.++|++++...++.+.+|+
T Consensus 62 ~~VLv~sl~FIa~VilLHI 80 (87)
T 2ww9_C 62 LVVLFLSVGFIFSVIALHL 80 (87)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred eeehhhHHHHHHHHHHHHH
Confidence 4688889998888899997
No 9
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=3.70 E-value=4.8e+02 Score=17.76 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=12.9
Q ss_pred ccCCceeeEecccCeE
Q 006046 310 HTPGQGYLYNCQTKEF 325 (663)
Q Consensus 310 ~e~gkGYLrNv~TgE~ 325 (663)
.+.|+=|.+|..|||-
T Consensus 7 ~~~g~~YYyN~~T~~s 22 (27)
T 1e0n_A 7 HENGRPLYYNAEQKTK 22 (27)
T ss_dssp ESSSSEEEEETTTTEE
T ss_pred CCCCCeEEEECCCCCE
Confidence 3578889999999873
No 10
>3n57_C Atrial natriuretic factor; insulysin, insulinase, A-beta degrading enzyme, cryptidase, hydrolase, hormone, disease mutation, diabetes mellitus; 3.03A {Homo sapiens} PDB: 1anp_A
Probab=3.39 E-value=2.7e+02 Score=19.90 Aligned_cols=11 Identities=36% Similarity=1.008 Sum_probs=8.4
Q ss_pred CCCCCcchHHH
Q 006046 281 QHPCFGNRWQQ 291 (663)
Q Consensus 281 ~~~CFGd~~sr 291 (663)
.+.|||.+..|
T Consensus 4 ~~gCFG~riDR 14 (28)
T 3n57_C 4 RSSCFGGRMDR 14 (28)
T ss_pred cccccCccccc
Confidence 46899988765
Done!