Query 006046
Match_columns 663
No_of_seqs 87 out of 89
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 14:31:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006046.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006046hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3brda2 b.2.5.8 (A:197-380) DN 7.7 22 0.0016 32.6 -1.9 28 39-71 19-46 (184)
2 d1o6wa1 b.72.1.1 (A:1-29) Spli 4.3 1.8E+02 0.013 19.1 1.7 16 310-325 9-24 (29)
3 d1hr6a2 d.185.1.1 (A:234-470) 4.1 89 0.0065 27.6 -0.0 29 618-648 45-81 (237)
4 d1ywia1 b.72.1.1 (A:15-42) Hun 4.0 1.8E+02 0.013 18.9 1.5 16 310-325 8-23 (28)
5 d1krha2 c.25.1.2 (A:206-338) B 2.6 63 0.0046 25.9 -2.5 23 620-645 9-31 (133)
6 d2guka1 d.360.1.1 (A:4-114) Hy 2.4 2.6E+02 0.019 23.3 1.2 13 291-303 89-101 (111)
7 d1xova1 b.34.11.4 (A:181-314) 2.4 1E+02 0.0075 26.0 -1.5 43 215-261 74-118 (134)
8 d2pa7a1 b.82.1.1 (A:2-136) dTD 2.3 3.3E+02 0.024 22.0 1.8 35 60-98 82-116 (135)
9 d2dk1a1 b.72.1.1 (A:7-44) WW d 2.3 3.3E+02 0.024 18.5 1.4 16 310-325 8-23 (38)
10 d1v3fa_ a.4.5.31 (A:) Pleckstr 2.3 3.5E+02 0.025 21.9 1.8 15 282-296 35-50 (120)
No 1
>d3brda2 b.2.5.8 (A:197-380) DNA-binding protein LAG-1 (CSL) {Caenorhabditis elegans [TaxId: 6239]}
Probab=7.71 E-value=22 Score=32.63 Aligned_cols=28 Identities=39% Similarity=0.666 Sum_probs=22.7
Q ss_pred HHHHhhhhhhhhccccCCcccccccccCCCCcc
Q 006046 39 CVLVVMHANYVQQKSYAPFDLNLNILLIKPGCS 71 (663)
Q Consensus 39 ~vl~~~h~nf~~~~~~~~~~~~~~~~~~ppgC~ 71 (663)
|++++||+- |+||||.+|--=|+ ||=|.
T Consensus 19 ~~v~ilHak-VAQKSYG~EKRFfC----PPP~v 46 (184)
T d3brda2 19 CVISIFHAK-VAQKSYGNEKRFFC----PPPCI 46 (184)
T ss_dssp EEEEEEEES-EEECBCTTCCCCCS----SCCEE
T ss_pred eEEEEeech-hhhhcccccccccC----CCCEE
Confidence 467889986 89999999986555 88885
No 2
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.29 E-value=1.8e+02 Score=19.05 Aligned_cols=16 Identities=38% Similarity=0.551 Sum_probs=13.5
Q ss_pred ccCCceeeEecccCeE
Q 006046 310 HTPGQGYLYNCQTKEF 325 (663)
Q Consensus 310 ~e~gkGYLrNv~TgE~ 325 (663)
..+|+=|-+|.+|+|-
T Consensus 9 ~~~G~~YYyN~~T~eS 24 (29)
T d1o6wa1 9 DASGRIYYYNTLTKKS 24 (29)
T ss_dssp CTTCCEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4678999999999983
No 3
>d1hr6a2 d.185.1.1 (A:234-470) Mitochondrial processing peptidase (MPP) alpha chain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=4.12 E-value=89 Score=27.61 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=19.3
Q ss_pred HHHHHhcCCCc-------cchhhhhhhhhhhhcc-cccc
Q 006046 618 LLLWILGGASS-------EGLNSFLSMFRDVREQ-GQVF 648 (663)
Q Consensus 618 ~~~w~lg~~~~-------~~~~s~~~~frd~r~~-~~~~ 648 (663)
+|==||||..+ +|..| ..|+.+|+. |-+|
T Consensus 45 vl~~iLGG~~~~~~~~~g~G~sS--rL~~~lre~~gLay 81 (237)
T d1hr6a2 45 TLQTLLGGGGSFSAGGPGKGMYS--RLYTHVLNQYYFVE 81 (237)
T ss_dssp HHHHHHCEEESSCCSSTTSCTTS--HHHHHTTTTCSSEE
T ss_pred HHHHHhCCCcccccCCCCCCccc--HHHHHHHHhcCchh
Confidence 55567887543 56776 478999984 5554
No 4
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.00 E-value=1.8e+02 Score=18.86 Aligned_cols=16 Identities=38% Similarity=0.654 Sum_probs=13.3
Q ss_pred ccCCceeeEecccCeE
Q 006046 310 HTPGQGYLYNCQTKEF 325 (663)
Q Consensus 310 ~e~gkGYLrNv~TgE~ 325 (663)
..+|+=|-+|.+|+|-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (28)
T d1ywia1 8 SPDGRTYYYNTETKQS 23 (28)
T ss_dssp ETTTEEEEEETTTTEE
T ss_pred CCCCCEEEeECCCCCE
Confidence 4578999999999983
No 5
>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}
Probab=2.63 E-value=63 Score=25.86 Aligned_cols=23 Identities=39% Similarity=0.840 Sum_probs=16.4
Q ss_pred HHHhcCCCccchhhhhhhhhhhhccc
Q 006046 620 LWILGGASSEGLNSFLSMFRDVREQG 645 (663)
Q Consensus 620 ~w~lg~~~~~~~~s~~~~frd~r~~~ 645 (663)
+||-||. |+.-|.||.|+.-+++
T Consensus 9 v~IAgG~---GItP~~s~l~~~~~~~ 31 (133)
T d1krha2 9 LMLAGGT---GIAPFLSMLQVLEQKG 31 (133)
T ss_dssp EEEEEGG---GHHHHHHHHHHHHHHC
T ss_pred EEEEccH---hHHHHHHHHHHHHHcC
Confidence 4555665 8888888888875554
No 6
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857 {Porphyromonas gingivalis [TaxId: 837]}
Probab=2.42 E-value=2.6e+02 Score=23.35 Aligned_cols=13 Identities=31% Similarity=0.777 Sum_probs=10.8
Q ss_pred HHHHHhhcCchHH
Q 006046 291 QLLINRFVGYDTI 303 (663)
Q Consensus 291 rlLL~~FlGYDdI 303 (663)
.|||..+||||.-
T Consensus 89 DFiLG~mLGYD~~ 101 (111)
T d2guka1 89 DFIIGAMLGYDIC 101 (111)
T ss_dssp HHHHHHHTTCCHH
T ss_pred HHHHHHHhcccHH
Confidence 3899999999963
No 7
>d1xova1 b.34.11.4 (A:181-314) Endolysin Ply, C-terminal domain {Bacteriophage Psa [TaxId: 171618]}
Probab=2.37 E-value=1e+02 Score=26.01 Aligned_cols=43 Identities=23% Similarity=0.454 Sum_probs=28.1
Q ss_pred cccCccccccccccc--chhhhhhHHhhhccccCCCcEEEeccceeecc
Q 006046 215 LNLDVPKLMHLLYLD--RIHSYAVQWLENRTKAFEPTYLYTMEKGYFLL 261 (663)
Q Consensus 215 ~~~d~pk~~~~~~~d--~l~~~~v~~~e~~~k~fEp~YeYSlEyGfLrL 261 (663)
..+.-.|+++++.+| +|||--+.|..-.+|.. .|--.+|+|-|
T Consensus 74 vriksakdlripvw~ntklnsgkikwy~p~tkls----wy~n~kgylel 118 (134)
T d1xova1 74 VRIKSAKDLRIPVWNNTKLNSGKIKWYSPGTKLS----WYDNKKGYLEL 118 (134)
T ss_dssp EEECCTTTCCEEEESSTTCSSSSEEEECTTCEEE----EECCSSSSEEE
T ss_pred EEeeccccceeeeecccccccceeEEecCCCeeE----EEeCCCceEEE
Confidence 344456778888888 56776666655444443 57777888755
No 8
>d2pa7a1 b.82.1.1 (A:2-136) dTDP-6-deoxy-3,4-keto-hexulose isomerase FdtA {Aneurinibacillus thermoaerophilus [TaxId: 143495]}
Probab=2.32 E-value=3.3e+02 Score=22.01 Aligned_cols=35 Identities=9% Similarity=0.189 Sum_probs=23.6
Q ss_pred ccccccCCCCcccccccCCCCccceEEEEEeccCCCCCC
Q 006046 60 NLNILLIKPGCSSEFAGIRMTEAQLIQIKISSAGLWSQN 98 (663)
Q Consensus 60 ~~~~~~~ppgC~~e~~~~~~~~~~llqVkI~s~g~~~~~ 98 (663)
|-..|.|||||.-.+..+ .++-++=+ ..++.++.+
T Consensus 82 ~~~~l~IPpg~~h~~~~l--~~~s~ll~--l~~~~y~~~ 116 (135)
T d2pa7a1 82 PAVGLYVGPAVWHEMHDF--SSDCVMMV--LASDYYDET 116 (135)
T ss_dssp TTEEEEECTTCEEEEECC--CTTCEEEE--EESSCCCGG
T ss_pred CCceeeeCCCEeeeEEec--CCCcEEEE--EcCCCCChH
Confidence 445899999999999986 34434333 566666543
No 9
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.29 E-value=3.3e+02 Score=18.52 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.2
Q ss_pred ccCCceeeEecccCeE
Q 006046 310 HTPGQGYLYNCQTKEF 325 (663)
Q Consensus 310 ~e~gkGYLrNv~TgE~ 325 (663)
..+|+=|-||.+|||-
T Consensus 8 ~~~G~~YYyN~~T~eS 23 (38)
T d2dk1a1 8 TSEGYHYYYDLISGAS 23 (38)
T ss_dssp CSTTCCCEEESSSCCE
T ss_pred CCCCCEEEEECCCCCE
Confidence 3578899999999983
No 10
>d1v3fa_ a.4.5.31 (A:) Pleckstrin 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.28 E-value=3.5e+02 Score=21.93 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=12.9
Q ss_pred CCCC-cchHHHHHHHh
Q 006046 282 HPCF-GNRWQQLLINR 296 (663)
Q Consensus 282 ~~CF-Gd~~srlLL~~ 296 (663)
..|| |.....+|++.
T Consensus 35 ~~cF~G~e~VdWL~~~ 50 (120)
T d1v3fa_ 35 KKTFLGSSLVDWLISS 50 (120)
T ss_dssp SSCEEHHHHHHHHHHT
T ss_pred CcEEEhHHHHHHHHHh
Confidence 5888 99999999985
Done!