BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006047
(663 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 95/341 (27%), Positives = 145/341 (42%), Gaps = 60/341 (17%)
Query: 208 LGENKQFDLPVKKKN----------DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257
LG ++ D+ V+ + D ++YTSGTTG PKG ++ + T + L
Sbjct: 131 LGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTL---DAL 187
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTI 317
++ + T EDV V LPL H+ +G +G L P
Sbjct: 188 ADAW--QWTGEDVLVQGLPLFHV-----------HGLVLGI--------------LGPLR 220
Query: 318 FCAVPRVLDRIYS-GLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
R L R + G ++++ G + LF + Y H+ E P AD
Sbjct: 221 RGGSVRHLGRFSTEGAARELNDGATM---LFGVPTMY--------HRIAETLP-ADP--- 265
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436
++ ++ G RL++SG+A L H + V++ YG+TET T V E
Sbjct: 266 -ELAKALAG-ARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PR 322
Query: 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DG 495
GTVG P+P V++ L AL GE+ V+G +F+ Y R D T DG
Sbjct: 323 AGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382
Query: 496 WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLEN 536
+F TGD+ PDG ++I+ RK S G + +EN
Sbjct: 383 FFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIEN 423
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 95.5 bits (236), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 121/484 (25%), Positives = 198/484 (40%), Gaps = 76/484 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y E + + A++ G+ G+ + NC E+ I + A +G+ P +
Sbjct: 54 SYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S +I F +K + +++ T KT +KTIV + + + Y
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVI-TVQKTVTTIKTIVIL-----DSKVDYRGY---- 163
Query: 200 YSWDEFLQLGENKQFD------LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
D F++ F + V +K + IM +SG+TG PKGV +++ENIVT +
Sbjct: 164 QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH 223
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-AAIGFWRGDVKLLLEDIGE 312
+ + +++ ++ +P H F ++ G + + D + L+ + +
Sbjct: 224 ARDPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQD 281
Query: 313 LKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372
K T VP +++ LN K L N Y NL +
Sbjct: 282 YKCTSVILVPT----LFAILN---------KSELLN---KYDLSNLVE------------ 313
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
I SG APL+ V E R V QGYGLTET + ++ P
Sbjct: 314 -----------------IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-P 355
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYD---ALSSTPRGEVCVKGSTVFSGYYKREDLT 488
G G VP L ++ D +L RGEVCVKG + GY + T
Sbjct: 356 EGDDKPGASGKVVP-----LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 489 KEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSV 547
KE++ +GW HTGDIG + + I+DR K++ K +G V LE++ +I
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDA 469
Query: 548 WVYG 551
V G
Sbjct: 470 GVAG 473
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 121/484 (25%), Positives = 198/484 (40%), Gaps = 76/484 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y E + + A++ G+ G+ + NC E+ I + A +G+ P +
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S +I F +K + +++ T KT +KTIV + + + Y
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVI-TVQKTVTTIKTIVIL-----DSKVDYRGY---- 163
Query: 200 YSWDEFLQLGENKQFD------LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
D F++ F + V +K + IM +SG+TG PKGV +++ENIVT +
Sbjct: 164 QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH 223
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-AAIGFWRGDVKLLLEDIGE 312
+ + +++ ++ +P H F ++ G + + D + L+ + +
Sbjct: 224 ARDPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQD 281
Query: 313 LKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372
K T VP +++ LN K L N Y NL +
Sbjct: 282 YKCTSVILVPT----LFAILN---------KSELLN---KYDLSNLVE------------ 313
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
I SG APL+ V E R V QGYGLTET + ++ P
Sbjct: 314 -----------------IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-P 355
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYD---ALSSTPRGEVCVKGSTVFSGYYKREDLT 488
G G VP L ++ D +L RGEVCVKG + GY + T
Sbjct: 356 EGDDKPGASGKVVP-----LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 489 KEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSV 547
KE++ +GW HTGDIG + + I+DR K++ K +G V LE++ +I
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDA 469
Query: 548 WVYG 551
V G
Sbjct: 470 GVAG 473
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 120/484 (24%), Positives = 198/484 (40%), Gaps = 76/484 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y E + + A++ G+ G+ + NC E+ I + A +G+ P +
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S +I F +K + +++ T KT +KTIV + + + Y
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVI-TVQKTVTTIKTIVIL-----DSKVDYRGY---- 163
Query: 200 YSWDEFLQLGENKQFD------LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
D F++ + + V +K + IM +SG+TG PKGV +++ENIVT +
Sbjct: 164 QCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH 223
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-AAIGFWRGDVKLLLEDIGE 312
+ + +++ ++ +P H F ++ G + + D + L+ + +
Sbjct: 224 ARDPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQD 281
Query: 313 LKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372
K T VP +++ LN K L N Y NL +
Sbjct: 282 YKCTNVILVPT----LFAILN---------KSELLN---KYDLSNLVE------------ 313
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
I SG APL+ V E R V QGYGLTET + ++ P
Sbjct: 314 -----------------IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-P 355
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYD---ALSSTPRGEVCVKGSTVFSGYYKREDLT 488
G G VP L ++ D +L RGEVCVKG + GY + T
Sbjct: 356 EGDDKPGASGKVVP-----LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 489 KEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSV 547
KE++ +GW HTGDIG + + I+DR K++ K +G V LE++ +I
Sbjct: 411 KELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDA 469
Query: 548 WVYG 551
V G
Sbjct: 470 GVAG 473
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 92.8 bits (229), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 134/540 (24%), Positives = 224/540 (41%), Gaps = 86/540 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E +++ +++ A++ G+ + + N ++ + + +G+ P D
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S ++ FV +K + ++L K K I+ SK + + ++
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ-------SM 169
Query: 200 YSW-DEFLQLGENKQFDLPVKKKND--ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256
Y++ L G N+ +P D I IM +SG+TG PKGV + + + +
Sbjct: 170 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 229
Query: 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPT 316
+ ++ + +S +P H F +F + G I +R V L+ EL
Sbjct: 230 PI--FGNQIIPDTAILSVVPFHHGFG-----MFTTLGYLICGFR--VVLMYRFEEEL--- 277
Query: 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
+ S + KI S LL TLF+ A +
Sbjct: 278 ----------FLRSLQDYKIQSA-LLVPTLFSF--------------------FAKSTLI 306
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435
DK S + I SG APL+ V E + + QGYGLTET + ++ P
Sbjct: 307 DKYDLS---NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDD 362
Query: 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD 494
G VG VP + + + + L RGE+CV+G + SGY + T ++ D
Sbjct: 363 KPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKD 420
Query: 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF 554
GW H+GDI W D I+DR K++ K +G VA LE+I + + N F
Sbjct: 421 GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESI---------LLQHPNIF 470
Query: 555 ESFLVAIVNPNKDALERWAA----ENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKG 610
++ + + P+ DA E AA E+G K++ E KE + S+V KKL+G
Sbjct: 471 DAGVAGL--PDDDAGELPAAVVVLEHG-----KTMTE----KEIVDYVASQVTTAKKLRG 519
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 134/540 (24%), Positives = 224/540 (41%), Gaps = 86/540 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E +++ +++ A++ G+ + + N ++ + + +G+ P D
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S ++ FV +K + ++L K K I+ SK + + ++
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ-------SM 164
Query: 200 YSW-DEFLQLGENKQFDLPVKKKND--ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256
Y++ L G N+ +P D I IM +SG+TG PKGV + + + +
Sbjct: 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 224
Query: 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPT 316
+ ++ + +S +P H F +F + G I +R V L+ EL
Sbjct: 225 PI--FGNQIIPDTAILSVVPFHHGFG-----MFTTLGYLICGFR--VVLMYRFEEEL--- 272
Query: 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
+ S + KI S LL TLF+ A +
Sbjct: 273 ----------FLRSLQDYKIQSA-LLVPTLFSF--------------------FAKSTLI 301
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435
DK S + I SG APL+ V E + + QGYGLTET + ++ P
Sbjct: 302 DKYDLS---NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDD 357
Query: 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD 494
G VG VP + + + + L RGE+CV+G + SGY + T ++ D
Sbjct: 358 KPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKD 415
Query: 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF 554
GW H+GDI W D I+DR K++ K +G VA LE+I + + N F
Sbjct: 416 GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESI---------LLQHPNIF 465
Query: 555 ESFLVAIVNPNKDALERWAA----ENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKG 610
++ + + P+ DA E AA E+G K++ E KE + S+V KKL+G
Sbjct: 466 DAGVAGL--PDDDAGELPAAVVVLEHG-----KTMTE----KEIVDYVASQVTTAKKLRG 514
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 126/541 (23%), Positives = 220/541 (40%), Gaps = 88/541 (16%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E +++ +++ A++ G+ + + N ++ + + +G+ P D
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S ++ FV +K + ++L K K I+ SK + + ++
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ-------SM 169
Query: 200 YSW-DEFLQLGENKQFDLPVKKKND--ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256
Y++ L G N+ +P D I IM +SG+TG PKGV + + + + +
Sbjct: 170 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARD 229
Query: 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-AAIGFWRGDVKLLLEDIGELKP 315
+ ++ + +S +P H F ++ +G + +R + +L L + + K
Sbjct: 230 PI--FGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKI 287
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
VP + L K TL + Y NL +
Sbjct: 288 QSALLVPTLFSF-------------LAKSTLID---KYDLSNLHE--------------- 316
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
I SG APL+ V E + + QGYGLTET + ++ P
Sbjct: 317 --------------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PKGD 361
Query: 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V 493
G VG VP + + + + L RGE+ V+G + SGY + T ++
Sbjct: 362 DKPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELSVRGPMIMSGYVNNPEATNALIDK 419
Query: 494 DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNS 553
DGW H+GDI W D I+DR K++ K +G VA LE+I + + N
Sbjct: 420 DGWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGCQVAPAELESI---------LLQHPNI 469
Query: 554 FESFLVAIVNPNKDALERWAA----ENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLK 609
F++ + + P+ DA E AA E+G K++ E KE + S+V KKL+
Sbjct: 470 FDAGVAGL--PDDDAGELPAAVVVLEHG-----KTMTE----KEIVDYVASQVTTAKKLR 518
Query: 610 G 610
G
Sbjct: 519 G 519
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 92.4 bits (228), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 134/540 (24%), Positives = 224/540 (41%), Gaps = 86/540 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E +++ +++ A++ G+ + + N ++ + + +G+ P D
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S ++ FV +K + ++L K K I+ SK + + ++
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ-------SM 164
Query: 200 YSW-DEFLQLGENKQFDLPVKKKND--ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256
Y++ L G N+ +P D I IM +SG+TG PKGV + + + +
Sbjct: 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 224
Query: 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPT 316
+ ++ + +S +P H F +F + G I +R V L+ EL
Sbjct: 225 PI--FGNQIIPDTAILSVVPFHHGFG-----MFTTLGYLICGFR--VVLMYRFEEEL--- 272
Query: 317 IFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
+ S + KI S LL TLF+ A +
Sbjct: 273 ----------FLRSLQDYKIQSA-LLVPTLFSF--------------------FAKSTLI 301
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435
DK S + I SG APL+ V E + + QGYGLTET + ++ P
Sbjct: 302 DKYDLS---NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PEGDD 357
Query: 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD 494
G VG VP + + + + L RGE+CV+G + SGY + T ++ D
Sbjct: 358 KPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKD 415
Query: 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF 554
GW H+GDI W D I+DR K++ K +G VA LE+I + + N F
Sbjct: 416 GWLHSGDIAYWDEDEHFFIVDRLKSLIKY-KGYQVAPAELESI---------LLQHPNIF 465
Query: 555 ESFLVAIVNPNKDALERWAA----ENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKG 610
++ + + P+ DA E AA E+G K++ E KE + S+V KKL+G
Sbjct: 466 DAGVAGL--PDDDAGELPAAVVVLEHG-----KTMTE----KEIVDYVASQVTTAKKLRG 514
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 130/526 (24%), Positives = 205/526 (38%), Gaps = 103/526 (19%)
Query: 34 DGFPAPIPGME-SCWDVFRMAVERNPNNRMLGQREIVDG-KAGKYVWKTYKEVYDLVIKV 91
+ FP+ + E + WD A + G++E+V G+ TY EVY ++
Sbjct: 7 NAFPSTMMDEELNLWDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARRL 60
Query: 92 VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGV 151
+ +R GV + G N + A +G L + +I+ H+
Sbjct: 61 MGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAED 120
Query: 152 SIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN 211
+ + P +L LKT+ F + EK +++E LGE
Sbjct: 121 KVLLFD----PNLLPLVEAIRGELKTVQHFVVMD-------EKAPEGYLAYEE--ALGEE 167
Query: 212 KQFDLPVK-KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV--NEKLTSE 268
PV+ + C + YT+GTTG PKGV+ S+ +V + L S+ L+ +
Sbjct: 168 AD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALV-----LHSLAASLVDGTALSEK 219
Query: 269 DVYVSYLPLAHIFDRAIEEVFISNGA--AIGFWRGDVKLLLEDIGELKPTIFCAVPRVLD 326
DV + +P+ H+ + GA + R D L+E T VP V
Sbjct: 220 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV-- 277
Query: 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386
+ L + S G KTL
Sbjct: 278 --WLALADYLESTGHRLKTLRR-------------------------------------- 297
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC---AGTFV-----SLPNE--MSM 436
L++ G+A + F R+ V QGYGLTET FV SL E +++
Sbjct: 298 --LVVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL 353
Query: 437 IGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
G P+P V + + VP+ GEV +KG + GYY E+ T+
Sbjct: 354 KAKTGLPIPLVRLRVADEEGRPVPK------DGKALGEVQLKGPWITGGYYGNEEATRSA 407
Query: 492 MV-DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLEN 536
+ DG+F TGDI W +G ++I DR K++ K S GE+++ +LEN
Sbjct: 408 LTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIK-SGGEWISSVDLEN 452
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 110/466 (23%), Positives = 186/466 (39%), Gaps = 67/466 (14%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNAL--GLHCVPLYDTL 137
TY E +++ ++ ++ G+ + + N ++ M C AL G+ P D
Sbjct: 86 TYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFF--MPVCGALFIGVGVAPTNDIY 143
Query: 138 GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197
+ + S +I F ++ + ++L K K ++ S+ ++
Sbjct: 144 NERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQ------- 196
Query: 198 AVYSWDE-FLQLGENKQFDLPVKKKNDICT--IMYTSGTTGDPKGVMVSNENIVTFIAGV 254
++YS+ E L G N+ +P + T IM +SG+TG PKGV ++++NI +
Sbjct: 197 SMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFS-- 254
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGF-WRGDVKLLLEDIGEL 313
C ++ + ++ +P H F +++ G I +R + +L L + +
Sbjct: 255 HCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDY 314
Query: 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADK 373
K I S LL TLF+ A
Sbjct: 315 K---------------------IQSA-LLVPTLFSF--------------------FAKS 332
Query: 374 IVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432
+ DK S + I SG APL V E + + QGYGLTET + ++
Sbjct: 333 TLVDKYDLS---NLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRG 389
Query: 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
G G VP + + + L RGE+CVKG + GY + T ++
Sbjct: 390 RDDKPGACGKVVPFFSAKIVDLDTGK--TLGVNQRGELCVKGPMIMKGYVNNPEATSALI 447
Query: 493 -VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
DGW H+GDI + DG I+DR K++ K +G V LE+I
Sbjct: 448 DKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKY-KGYQVPPAELESI 492
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 82.0 bits (201), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 97/330 (29%), Positives = 144/330 (43%), Gaps = 69/330 (20%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ + Y+SGTTG PKGVM++++ +VT +A + E+ N S+DV + LP+ HI+
Sbjct: 225 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ-QVDGENPNLYFHSDDVILCVLPMFHIY 283
Query: 282 DRAIEEVFISN---GAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337
A+ + + GAAI + ++ LLLE I K T+ VP
Sbjct: 284 --ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP--------------- 326
Query: 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFG-GRVRLILSGAAP 396
PI I + + +R++ SGAAP
Sbjct: 327 -------------------------------PIVLAIAKSSETEKYDLSSIRVVKSGAAP 355
Query: 397 LTPHVETFLRV-VACAHVLQGYGLTETCAGTFVSL-------PNEMSMIGTVGPPVPNVD 448
L +E + A + QGYG+TE +SL P + GTV V N +
Sbjct: 356 LGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTV---VRNAE 412
Query: 449 VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQP 507
++ V D+LS GE+C++G + GY T E + DGW HTGDIG
Sbjct: 413 --MKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDD 470
Query: 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
D L I+DR K + K +G VA LE +
Sbjct: 471 DDELFIVDRLKELIKY-KGFQVAPAELEAL 499
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 113/522 (21%), Positives = 188/522 (36%), Gaps = 108/522 (20%)
Query: 50 FRMAVERNPNNRMLGQREIVDGKAGKYVWKT--YKEVYDLVIKVVNAIRTCGVEERGKCG 107
F+ AV NP D A Y +T Y+E+ + ++ ++ G +
Sbjct: 470 FKEAVNANP-----------DAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVA 518
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
+Y E +IG+ G +P+ L + +++ S +
Sbjct: 519 LYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLL------------ 566
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
T + +K EQ E+ G ++ D+ + E ND I
Sbjct: 567 ---THQEMK----------EQAAELPYTGTTLF-IDDQTRFEEQASDPATAIDPNDPAYI 612
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEE 287
MYTSGTTG PKG + ++ NI + V + + +D ++S A FD +
Sbjct: 613 MYTSGTTGKPKGNITTHANIQGLVKHVDYM------AFSDQDTFLSVSNYA--FDAFTFD 664
Query: 288 VFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347
+ S A D LL+ R+ D I Q+ + LF
Sbjct: 665 FYASMLNAARLIIADEHTLLD------------TERLTDLIL----QENVNVMFATTALF 708
Query: 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRV 407
N+ + D + G ++ G PHV LR+
Sbjct: 709 NL-------------------------LTDAGEDWMKGLRCILFGGERASVPHVRKALRI 743
Query: 408 VACAHVLQGYGLTE----TCAGTFVSLPNEMSMIGTVGPPVPNVDVCL--ESVPEMEYDA 461
+ ++ YG TE A LP+ +S + +G P+ N V + E + A
Sbjct: 744 MGPGKLINCYGPTEGTVFATAHVVHDLPDSISSL-PIGKPISNASVYILNEQSQLQPFGA 802
Query: 462 LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWF-------HTGDIGEWQPDGSLKII 514
+ GE+C+ G V GY R DLTKE ++ F TGD+ W PDG+++
Sbjct: 803 V-----GELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLPDGTIEYA 857
Query: 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFES 556
R + K+ +G + +E +E + V + ES
Sbjct: 858 GRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHES 898
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 123/496 (24%), Positives = 199/496 (40%), Gaps = 104/496 (20%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY +V +V + + G+++ ++ + PE+++ LGA
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF----------------LGA 94
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS---FSKVKPEQREE----- 191
H G I P L K + I + KVK RE
Sbjct: 95 S-------HRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVM 147
Query: 192 -IEKYGLAVYSWDEFLQLGENK--QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV 248
++ + E Q EN+ Q D+ +D+ + Y+SGTTG PKGVM++++ ++
Sbjct: 148 CVDSAPDGCLHFSELTQADENEAPQVDI---SPDDVVALPYSSGTTGLPKGVMLTHKGLI 204
Query: 249 TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLE 308
T +A + ++ N SEDV + LP+ HI+ A+ + + G G L++
Sbjct: 205 TSVAQ-QVDGDNPNLYFHSEDVILCVLPMFHIY--ALNSIMLC-----GLRVGAPILIMP 256
Query: 309 --DIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVE 366
+IG L I K+S ++ + +IA S KH
Sbjct: 257 KFEIGSLLGLIE--------------KYKVSIAPVVPPVMMSIAKSPDLD------KHDL 296
Query: 367 ASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRV-VACAHVLQGYGLTET--- 422
+S +R+I SG APL +E +R A + QGYG+TE
Sbjct: 297 SS------------------LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAGPV 338
Query: 423 ---CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPR---GEVCVKGST 476
C F P ++ G G V N ++ + ++ + +S PR GE+C++G
Sbjct: 339 LAMCLA-FAKEPFDIKP-GACGTVVRNAEMKI-----VDPETGASLPRNQPGEICIRGDQ 391
Query: 477 VFSGYYKREDLT-KEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLE 535
+ GY + T + + +GW HTGDIG D L I+DR K + K +G VA LE
Sbjct: 392 IMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELE 450
Query: 536 NIYALVSAIDSVWVYG 551
+ I V G
Sbjct: 451 ALLIAHPEISDAAVVG 466
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 85/313 (27%), Positives = 129/313 (41%), Gaps = 74/313 (23%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+ +D+ I+YTSGTTG KG +S++N+ + L + T +DV + LP+
Sbjct: 152 RGADDLAAILYTSGTTGRSKGAXLSHDNLAS-----NSLTLVDYWRFTPDDVLIHALPIY 206
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLL----EDIGEL--KPTIFCAVPRVLDRIYSGL 332
H +F+++ + F RG L + I +L + T+ VP R+
Sbjct: 207 HT-----HGLFVASNVTL-FARGSXIFLPKFDPDKILDLXARATVLXGVPTFYTRL---- 256
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
+ S L K+T G RL +S
Sbjct: 257 ---LQSPRLTKETT--------------------------------------GHXRLFIS 275
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G+APL VL+ YG TET T S P + + G VGP +P V +
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGXTETNXNT--SNPYDGDRVPGAVGPALPGVSARV 333
Query: 452 ESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLTK-EVMVDGWFHTGDIGEWQP 507
PE PRG++ VKG VF GY++ + TK E DG+F TGD+G+
Sbjct: 334 TD-PETG----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITGDLGKIDE 388
Query: 508 DGSLKIIDRKKNI 520
G + I+ R K++
Sbjct: 389 RGYVHILGRGKDL 401
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 51/167 (30%), Positives = 82/167 (49%), Gaps = 11/167 (6%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAH--VLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPV 444
R ++G AP+ E +++ A + V+QGY LTE+C G T + + + G+ G
Sbjct: 287 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 343
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGE 504
DV + + + GEV +K + Y+ R + T++ +GWF TGDIGE
Sbjct: 344 MFTDVAVRG----DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGE 399
Query: 505 WQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
+G L I DR K++ +S GE V +E++ V + V V G
Sbjct: 400 IDDEGYLYIKDRLKDMI-ISGGENVYPAEIESVIIGVPGVSEVAVIG 445
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 33/197 (16%)
Query: 62 MLGQREIVDGKAGKYV------WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115
ML QR V + YV TY ++ L + + + G+ + + + N E
Sbjct: 21 MLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE 80
Query: 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL 175
+ LG VP+ L A V FI+ SG + P
Sbjct: 81 FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP------------- 127
Query: 176 KTIVSFSKVKPEQREEIEKYGLAVYSW---DEFLQLGENKQFDLPVKK--KNDICTIMYT 230
V R + + G V W D + + D P + +D IMYT
Sbjct: 128 --------VIDAIRAQADPPG-TVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYT 178
Query: 231 SGTTGDPKGVMVSNENI 247
SGTTG PKGV+ ++E++
Sbjct: 179 SGTTGHPKGVVHTHESV 195
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 127/313 (40%), Gaps = 74/313 (23%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+ +D+ I+YTSGTTG G M+S++N+ + L + T +DV + LP+
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDNLAS-----NSLTLVDYWRFTPDDVLIHALPIY 206
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLL----EDIGEL--KPTIFCAVPRVLDRIYSGL 332
H +F+++ + F RG + L + I +L + T+ VP R+
Sbjct: 207 HT-----HGLFVASNVTL-FARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRLLQ-- 258
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
SP ++ G +RL +S
Sbjct: 259 -----------------------------------SP--------RLTXETTGHMRLFIS 275
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G+APL VL+ YG+TET T S P + + G VGP +P V +
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNT--SNPYDGDRVPGAVGPALPGVSARV 333
Query: 452 ESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLT-KEVMVDGWFHTGDIGEWQP 507
PE + PRG++ V G VF GY++ + T E DG+F TGD+G
Sbjct: 334 TD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDE 388
Query: 508 DGSLKIIDRKKNI 520
G + I+ R ++
Sbjct: 389 RGYVHILGRGXDL 401
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 127/313 (40%), Gaps = 74/313 (23%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+ +D+ I+YTSGTTG G M+S++N+ + L + T +DV + LP+
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDNLAS-----NSLTLVDYWRFTPDDVLIHALPIY 206
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLL----EDIGEL--KPTIFCAVPRVLDRIYSGL 332
H +F+++ + F RG + L + I +L + T+ VP R+
Sbjct: 207 HT-----HGLFVASNVTL-FARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRLLQ-- 258
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
SP ++ G +RL +S
Sbjct: 259 -----------------------------------SP--------RLTXETTGHMRLFIS 275
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G+APL VL+ YG+TET T S P + + G VGP +P V +
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNT--SNPYDGDRVPGAVGPALPGVSARV 333
Query: 452 ESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLT-KEVMVDGWFHTGDIGEWQP 507
PE + PRG++ V G VF GY++ + T E DG+F TGD+G
Sbjct: 334 TD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDE 388
Query: 508 DGSLKIIDRKKNI 520
G + I+ R ++
Sbjct: 389 RGYVHILGRGXDL 401
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 72.4 bits (176), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 127/313 (40%), Gaps = 74/313 (23%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+ +D+ I+YTSGTTG G M+S++N+ + L + T +DV + LP+
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDNLAS-----NSLTLVDYWRFTPDDVLIHALPIY 206
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLL----EDIGEL--KPTIFCAVPRVLDRIYSGL 332
H +F+++ + F RG + L + I +L + T+ VP R+
Sbjct: 207 HT-----HGLFVASNVTL-FARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRLLQ-- 258
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
SP ++ G +RL +S
Sbjct: 259 -----------------------------------SP--------RLTXETTGHMRLFIS 275
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G+APL VL+ YG+TET T S P + + G VGP +P V +
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNT--SNPYDGDRVPGAVGPALPGVSARV 333
Query: 452 ESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLT-KEVMVDGWFHTGDIGEWQP 507
PE + PRG++ V G VF GY++ + T E DG+F TGD+G
Sbjct: 334 TD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITGDLGXIDE 388
Query: 508 DGSLKIIDRKKNI 520
G + I+ R ++
Sbjct: 389 RGYVHILGRGXDL 401
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 143/329 (43%), Gaps = 71/329 (21%)
Query: 211 NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270
N F+L +DI +IM+TSGTTG K V + N G K ES+ +
Sbjct: 157 NTSFNL-----DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK---ESLG--FDRDTN 206
Query: 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329
++S LP+ HI ++ + G + + + + +L I + T VP+ L+
Sbjct: 207 WLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLN--- 263
Query: 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRL 389
L+++ L ++ +NL+K +
Sbjct: 264 ----------WLMQQGL------HEPYNLQK----------------------------I 279
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM-SMIGTVGPPVPNVD 448
+L GA +ET L+ + +G+TETC+ + P + + TVG P NVD
Sbjct: 280 LLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVD 337
Query: 449 VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD 508
V +++ P E GE+ +KG+ V +GY DLT +G+F+TGDI E +
Sbjct: 338 VKIKN-PNKE-------GHGELMIKGANVMNGYLYPTDLTG-TFENGYFNTGDIAEIDHE 388
Query: 509 GSLKIIDRKKNIFKLSQGEYVAVENLENI 537
G + I DR+K++ +S GE + +E +
Sbjct: 389 GYVMIYDRRKDLI-ISGGENIYPYQIETV 416
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 10/131 (7%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAH--VLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPV 444
R ++G AP+ E +++ A + V+QGY LTE+C G T + + + G+ G
Sbjct: 273 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 329
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGE 504
DV + + + GEV +K + Y+ R + T++ +GWF TGDIGE
Sbjct: 330 MFTDVAVRG----DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGE 385
Query: 505 WQPDGSLKIID 515
+G L I D
Sbjct: 386 IDDEGYLYIKD 396
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 33/197 (16%)
Query: 62 MLGQREIVDGKAGKYV------WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115
ML QR V + YV TY ++ L + + + G+ + + + N E
Sbjct: 7 MLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE 66
Query: 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL 175
+ LG VP+ L A V FI+ SG + P
Sbjct: 67 FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP------------- 113
Query: 176 KTIVSFSKVKPEQREEIEKYGLAVYSW---DEFLQLGENKQFDLPVKK--KNDICTIMYT 230
V R + + G V W D + + D P + +D IMYT
Sbjct: 114 --------VIDAIRAQADPPG-TVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYT 164
Query: 231 SGTTGDPKGVMVSNENI 247
SGTTG PKGV+ ++E++
Sbjct: 165 SGTTGHPKGVVHTHESV 181
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 109/489 (22%), Positives = 186/489 (38%), Gaps = 80/489 (16%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+ E+ ++ K+ + I GV + G+ N +++ + A + VP+ +
Sbjct: 54 NFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKS 113
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+E I+ S + V E+ K ++ + V E + G V
Sbjct: 114 FELEHILNDSEATTLVVHSX-----------LYENFKPVLEKTGV-----ERVFVVGGEV 157
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
S E G ++ V + D+ I YT GTTG PKGV +++ N+ L
Sbjct: 158 NSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNL-----AANALQL 212
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAA-IGFWRGDVKLLLEDIGELKPTIF 318
+V L+ D V P H + + + ++ G + + + L E+I + K T
Sbjct: 213 AVATGLSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFS 272
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
AVP L+ + + L N Y + +
Sbjct: 273 WAVPPALNVLVNTLESS------------NKTYDWSY----------------------- 297
Query: 379 VKQSFGGRVRLILSGAAPLTPH-VETFLRVVA--CAHVL----QGYGLTETCAGTFVSLP 431
+++ +GA P+ P VE L++ A C + Q +G TE C + P
Sbjct: 298 --------LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPP 349
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
+ T G VP D+ L+ + + L GE+ ++G +F GY+KRE +E
Sbjct: 350 LRLDKSTTQG--VPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQEC 407
Query: 492 MV-----DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDS 546
+F TGD+G +G L DR K + K +G +A LE + A+
Sbjct: 408 WWYDEKGRKFFRTGDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLXKHEAVXD 466
Query: 547 VWVYGNSFE 555
V V G E
Sbjct: 467 VAVIGKPDE 475
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 76/152 (50%), Gaps = 17/152 (11%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQG 526
GE+ V S + F GY + + T E + DGW+ T D+ W P+G+++I+ R ++ +S G
Sbjct: 351 GELIVAASDSAFVGYLNQPEATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGG 409
Query: 527 EYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNP------NKDALERWAAENG 577
E + +E + + V V G + + + + A V P + DAL+ + +
Sbjct: 410 ENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469
Query: 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLK 609
+ DFK PK + FIL +L + A K L+
Sbjct: 470 L-ADFK----RPK-RYFILDQLPKNALNKVLR 495
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 58.9 bits (141), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 95/206 (46%), Gaps = 21/206 (10%)
Query: 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK 473
+ GYG TE ++ P GT P +V + + + +++ GE+ V
Sbjct: 301 VNGYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVA 356
Query: 474 GS-TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVE 532
S + F GY + T E + DGW+ T D+ W P+G+++I+ R ++ +S GE +
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGGENIHPS 415
Query: 533 NLENIYALVSAIDSVWVYGNSFESF---LVAIVNP------NKDALERWAAENGVNGDFK 583
+E + + V V G + + + + A V P + DAL+ + + + DFK
Sbjct: 416 EIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSEL-ADFK 474
Query: 584 SLCENPKAKEFILGELSRVAKEKKLK 609
PK + FIL +L + A K L+
Sbjct: 475 ----RPK-RYFILDQLPKNALNKVLR 495
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQG 526
GE+ V S + F GY + T E + DGW+ T D+ W P+G+++I+ R ++ +S G
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMI-ISGG 409
Query: 527 EYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNP------NKDALERWAAENG 577
E + +E + + V V G + + + + A V P + DAL+ + +
Sbjct: 410 ENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469
Query: 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLK 609
+ DFK PK + FIL +L + A K L+
Sbjct: 470 L-ADFK----RPK-RYFILDQLPKNALNKVLR 495
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQG 526
GE+ V S + F GY + T E + DGW+ T D+ W P+G+++I+ R ++ +S G
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGG 409
Query: 527 EYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNP------NKDALERWAAENG 577
E + +E + + V V G + + + + A V P + DAL+ + +
Sbjct: 410 ENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469
Query: 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLK 609
+ DFK PK + FIL +L + A K L+
Sbjct: 470 L-ADFK----RPK-RYFILDQLPKNALNKVLR 495
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 75/152 (49%), Gaps = 17/152 (11%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQG 526
GE+ V S + F GY + T E + DGW+ T D+ W P+G+++I+ R ++ +S G
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMI-ISGG 409
Query: 527 EYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNP------NKDALERWAAENG 577
E + +E + + V V G + + + + A V P + DAL+ + +
Sbjct: 410 ENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469
Query: 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLK 609
+ DFK PK + FIL +L + A K L+
Sbjct: 470 L-ADFK----RPK-RYFILDQLPKNALNKVLR 495
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 13/133 (9%)
Query: 414 LQGYGLTET--CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVC 471
+ YG TET CA T+V+ + +G P+ N + + + S GE+C
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIY---IVDENLQLKSVGEAGELC 376
Query: 472 VKGSTVFSGYYKREDLTKEVMVDGWF-------HTGDIGEWQPDGSLKIIDRKKNIFKLS 524
+ G + GY+KR +LT + VD F TGD W DG+++ + R N K+
Sbjct: 377 IGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLSDGNIEYLGRIDNQVKI- 435
Query: 525 QGEYVAVENLENI 537
+G V +E +E+I
Sbjct: 436 RGHRVELEEVESI 448
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 12/97 (12%)
Query: 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE-SV 261
++ +++ E +P K D+ ++YTSGTTG+PKG M+ ++ I+ +K E S+
Sbjct: 164 EDTIKIREGTNLHVP-SKSTDLAYVIYTSGTTGNPKGTMLEHKG----ISNLKVFFENSL 218
Query: 262 NEKLTSEDVYVSYLPLAHIFDRAIEEVFIS--NGAAI 296
N +T +D + ++ FD ++ E+F++ GA++
Sbjct: 219 N--VTEKDRIGQFASIS--FDASVWEMFMALLTGASL 251
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 74/152 (48%), Gaps = 17/152 (11%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQG 526
GE+ V S + F GY + T E + DGW+ T D+ W P+G+++I+ R + +S G
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXI-ISGG 409
Query: 527 EYVAVENLENIYALVSAIDSVWVYGNSFESF---LVAIVNP------NKDALERWAAENG 577
E + +E + + V V G + + + + A V P + DAL+ + +
Sbjct: 410 ENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRSSE 469
Query: 578 VNGDFKSLCENPKAKEFILGELSRVAKEKKLK 609
+ DFK PK + FIL +L + A K L+
Sbjct: 470 L-ADFK----RPK-RYFILDQLPKNALNKVLR 495
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 114/316 (36%), Gaps = 68/316 (21%)
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSYLPL 277
K DIC + ++SGT G PK V N + I K ++ L T D
Sbjct: 223 KNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVW 282
Query: 278 AHIFDRAIE--EVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335
++ + I VF+ + + R + K +LE + T FCA P +
Sbjct: 283 GKLYGQWIAGCAVFVYD-----YDRFEAKNMLEKASKYGVTTFCAPPTIYRF-------- 329
Query: 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395
L+K+ L + Y F LK +
Sbjct: 330 -----LIKEDLSH----YNFSTLKYA-----------------------------VVAGE 351
Query: 396 PLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVP 455
PL P V +++G+G TET T + P G++G P P + L
Sbjct: 352 PLNPEVFNRFLEFTGIKLMEGFGQTETVV-TIATFPWMEPKPGSIGKPTPGYKIEL---- 406
Query: 456 EMEYDA--LSSTPRGEVCV-----KGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD 508
M+ D GE+ + K +F Y K + T+E DG++HTGD+ D
Sbjct: 407 -MDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDED 465
Query: 509 GSLKIIDRKKNIFKLS 524
G L + R +I K S
Sbjct: 466 GYLWFVGRADDIIKTS 481
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDR--KKNIFKLSQ 525
GE+ ++G TVF GY+ T+ +GW HTGD+G + DG L R +K + K +
Sbjct: 348 GEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIK-TG 406
Query: 526 GEYVAVENLENIYALVSAIDSVWVYG 551
GE V +E AI V G
Sbjct: 407 GENVYPAEVEGALKQHPAIADAVVIG 432
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 29/233 (12%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
DV+R P+ +VDG V T+++ ++ + + GV +
Sbjct: 10 DVYRRNAALFPDRTAF----MVDG-----VRLTHRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
I NC E I + A +G +P+ L A + F++ S+ +
Sbjct: 61 ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV 120
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
P S VK + G + F L + F P D I
Sbjct: 121 LP----------SLGGVK-----KAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
++T+ G P+G ++S N++ L+++ +LT DV + LPL H+
Sbjct: 166 IHTAAVGGRPRGALISQGNLLI---AQSSLVDA--WRLTEADVNLGMLPLFHV 213
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 90/378 (23%), Positives = 147/378 (38%), Gaps = 69/378 (18%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA-HIFDRAI 285
++YTSG+TG PKGV VS N+ +F L+ +V K +L LA FD I
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI 239
Query: 286 EEVFISNGAAIGFWRGDVKLLLEDI----GELKPTIFCAVPRVLDRIYSGLNQKISSGGL 341
E F++ + G+ L+D+ EL T VP +LD+ GL
Sbjct: 240 GEXFLAWRFGLCAVTGERLSXLDDLPRTFRELGVTHAGIVPSLLDQT-----------GL 288
Query: 342 LKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHV 401
+ + ++ Y K + + +D++ V +G I A + P
Sbjct: 289 VPEDAPHLVY-LGVGGEKXTPRTQQIWSSSDRVALVNV---YGPTEVTIGCSAGRILPDS 344
Query: 402 ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDA 461
+T R + G+ L ++ A NE G G
Sbjct: 345 DT--RCI-------GHPLGDSVAHVLAPGSNEHVKKGXAG-------------------- 375
Query: 462 LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTGDIGEWQPDGSLKIIDRKKN 519
E+ ++GS V +GY R D ++G + TGDI D S+ + RK
Sbjct: 376 -------ELVIEGSLVANGYLNRPDAKGFCDINGRKXYRTGDIVRXDADSSILFLGRKDE 428
Query: 520 IFKLSQGEYVAVENLENIYALVSA--IDSVWVYGN---SFESFLVAIVNPNKDALE---R 571
K+ +G+ + + + + +S ID V + N + + FLV+ V + A+ R
Sbjct: 429 QVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELR 487
Query: 572 WAAEN--GVNGDFKSLCE 587
W EN +N + CE
Sbjct: 488 WINENYKEINNSLRQACE 505
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 113/532 (21%), Positives = 197/532 (37%), Gaps = 133/532 (25%)
Query: 76 YVWK----TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV 131
+VW+ TYK++ + + + I + ++R +YG PE II C G +
Sbjct: 20 FVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYI 79
Query: 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREE 191
P+ ++ A V+ I +SG + + T T+ IVS +K
Sbjct: 80 PVDLSIPADRVQRIAENSGAKLL---------LSATAVTVTDLPVRIVSEDNLK------ 124
Query: 192 IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
D F N K ++ I+YTSG+TG+PKGV ++ +V+F
Sbjct: 125 -----------DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSF- 172
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIG 311
K +E N L + V+++ P + FD ++ +++ S W D ++
Sbjct: 173 --TKWAVEDFN--LQTGQVFLNQAPFS--FDLSVMDIYPSLVTGGTLWAIDKDMI----- 221
Query: 312 ELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIA 371
A P+ L F +L++ V S
Sbjct: 222 --------ARPKDL-----------------------------FASLEQSDIQVWTS--- 241
Query: 372 DKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
SF + S + + P+++TFL C VL A +
Sbjct: 242 --------TPSFAEMCLMEASFSESMLPNMKTFL---FCGEVLPN-----EVARKLIERF 285
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTP------------------------R 467
+ +++ T GP V V V E D S P +
Sbjct: 286 PKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK 345
Query: 468 GEVCVKGSTVFSGYYKREDLTKE--VMVDG--WFHTGDIGEWQPDGSLKIIDRKKNIFKL 523
GE+ + G +V GY +LT++ M+DG + TGD G + +G L R KL
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG-YVENGLLFYNGRLDFQIKL 404
Query: 524 SQGEYVAVENLENIYALVSAIDSVWVY----GNSFESFLVAIVNPNKDALER 571
G + +E +E+ S ++ + G ++ +L+A+V P + + E+
Sbjct: 405 -HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYD-YLLAVVVPGEHSFEK 454
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 47.0 bits (110), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 113/532 (21%), Positives = 197/532 (37%), Gaps = 133/532 (25%)
Query: 76 YVWK----TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV 131
+VW+ TYK++ + + + I + ++R +YG PE II C G +
Sbjct: 20 FVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYI 79
Query: 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREE 191
P+ ++ A V+ I +SG + + T T+ IVS +K
Sbjct: 80 PVDLSIPADRVQRIAENSGAKLL---------LSATAVTVTDLPVRIVSEDNLK------ 124
Query: 192 IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
D F N K ++ I+YTSG+TG+PKGV ++ +V+F
Sbjct: 125 -----------DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSF- 172
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIG 311
K +E N L + V+++ P + FD ++ +++ S W D ++
Sbjct: 173 --TKWAVEDFN--LQTGQVFLNQAPFS--FDLSVMDIYPSLVTGGTLWAIDKDMI----- 221
Query: 312 ELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIA 371
A P+ L F +L++ V S
Sbjct: 222 --------ARPKDL-----------------------------FASLEQSDIQVWTS--- 241
Query: 372 DKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
SF + S + + P+++TFL C VL A +
Sbjct: 242 --------TPSFAEMCLMEASFSESMLPNMKTFL---FCGEVLPN-----EVARKLIERF 285
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTP------------------------R 467
+ +++ T GP V V V E D S P +
Sbjct: 286 PKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEK 345
Query: 468 GEVCVKGSTVFSGYYKREDLTKE--VMVDG--WFHTGDIGEWQPDGSLKIIDRKKNIFKL 523
GE+ + G +V GY +LT++ M+DG + TGD G + +G L R KL
Sbjct: 346 GEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAG-YVENGLLFYNGRLDFQIKL 404
Query: 524 SQGEYVAVENLENIYALVSAIDSVWVY----GNSFESFLVAIVNPNKDALER 571
G + +E +E+ S ++ + G ++ +L+A+V P + + E+
Sbjct: 405 -HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYD-YLLAVVVPGEHSFEK 454
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 155/369 (42%), Gaps = 73/369 (19%)
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
K+++ I+YTSG+TG+PKGV +S N+ +F + C + ++ ++++ P +
Sbjct: 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWI-C----ADFPVSGGKIFLNQAPFS- 194
Query: 280 IFDRAIEEVF--ISNGAAIGFWRGDV----KLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
FD ++ +++ + +G + D K+L E++ + SGLN
Sbjct: 195 -FDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKK-----------------SGLN 236
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
S+ ++ L + +S P AD + F G V L +S
Sbjct: 237 VWTSTPSFVQMCLMDPGFSQDL------------LPHADTFM-------FCGEV-LPVSV 276
Query: 394 AAPLTPHVETFLRVVACAHVLQGYGLTE-TCAGTFVSLPNEM---SMIGTVGPPVPNVDV 449
A L +E F + A + YG TE T A T V + N++ S VG P++++
Sbjct: 277 AKAL---LERFPK----AKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNI 329
Query: 450 CLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD---GW-FHTGDIGEW 505
+ + E L +GE+ + G +V GY +LT++ W + TGD G
Sbjct: 330 F---IMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386
Query: 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWV---YGNSFESFLVAIV 562
Q DG + R KL G + +E +E + S V N +L+A +
Sbjct: 387 Q-DGQIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAI 444
Query: 563 NPNKDALER 571
P + E+
Sbjct: 445 VPEEHEFEK 453
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 63/128 (49%), Gaps = 19/128 (14%)
Query: 466 PRGEV---CVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521
P GE+ +G F GYY+ + +V D ++++GD+ + PDG+L+++ R K+
Sbjct: 383 PEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQI 442
Query: 522 KLSQGEYVAVENLENIY---------ALVSAIDSVWVYGNSFESFLVAIVNPNKDA--LE 570
GE +A E +E + ALV+ +D +G +F+V+ NP A L
Sbjct: 443 NRG-GEKIASEEIEKLILLHPEVMHAALVAIVDE--QFGEKSCAFIVS-RNPELKAVVLR 498
Query: 571 RWAAENGV 578
R E G+
Sbjct: 499 RHLMELGI 506
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 15/118 (12%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276
P D+ ++YTSGTTG+PKGV V + N++ +AG + + + +D ++ +
Sbjct: 170 PGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFD-----FSGDDRWLLFHS 224
Query: 277 LAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334
L+ FD ++ E++ GA F G ++L P + AV ++DR + +NQ
Sbjct: 225 LS--FDFSVWEIW---GA---FSTGAELVVLPHWAARTPEQYLAV--IIDRGVTVINQ 272
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 15/81 (18%)
Query: 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE 263
E ++L + + K NDI + YTSG+T PKGV VS+ N LL+++N+
Sbjct: 149 ESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHN----------LLDNLNK 198
Query: 264 KLTS-----EDVYVSYLPLAH 279
TS E + S+LP H
Sbjct: 199 IFTSFHXNDETIIFSWLPPHH 219
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGE 527
G +C+ G ++ SGY+ + E+ GW TGD+G + DG L + R K++ + +G
Sbjct: 411 GHICISGPSLXSGYFGDQVSQDEIAATGWLDTGDLG-YLLDGYLYVTGRIKDLI-IIRGR 468
Query: 528 YVAVENLENI 537
+ +++E I
Sbjct: 469 NIWPQDIEYI 478
Score = 35.8 bits (81), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
NDI + YTSG+T P+GV++++ + + + KL D VS+LP H
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAIS----HDGIKLRPGDRCVSWLPFYH 228
>pdb|4DG8|A Chain A, Structure Of Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains
pdb|4DG9|A Chain A, Structure Of Holo-Pa1221, An Nrps Protein Containing
Adenylation And Pcp Domains Bound To Vinylsulfonamide
Inhibitor
Length = 620
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 71/322 (22%), Positives = 110/322 (34%), Gaps = 69/322 (21%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276
P + I I ++SGTTG PK + ++ I G L + ++ P
Sbjct: 159 PCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLGQSFL------AFAPQMRFLVNSP 212
Query: 277 LAHIFDRAIEEVF--ISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334
L+ FD A E++ + NG +L D+G L P + R L + +
Sbjct: 213 LS--FDAATLEIWGALLNGGCC---------VLNDLGPLDPGVL----RQL------IGE 251
Query: 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGA 394
+ + L +LFN + D GG +L+ G
Sbjct: 252 RGADSAWLTASLFNT-------------------------LVDLDPDCLGGLRQLLTGGD 286
Query: 395 APLTPHVETFLRVVACAHVLQGYGLTE----TCAGTFVSLPNEMSMIGTVGPPVPNVDVC 450
PHV L H++ GYG TE TC E I +G + V
Sbjct: 287 ILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDLEEDDI-PIGKAIAGTAVL 345
Query: 451 LESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD--------GWFHTGDI 502
L + E + GE+ G+ + GY T+ V+ + TGD
Sbjct: 346 L--LDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDR 403
Query: 503 GEWQPDGSLKIIDRKKNIFKLS 524
+ G L+ I R KL+
Sbjct: 404 ARYDEQGRLRFIGRGDGQVKLN 425
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 76/337 (22%), Positives = 128/337 (37%), Gaps = 65/337 (19%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIV-TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
+DI +Y+SG+TG PKG + ++ N+ T K +L + DV S L
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLFFA 237
Query: 281 FDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGG 340
+ + NG G +L+ + +PT D I++ L +
Sbjct: 238 YG-------LGNGLTFPLSVGATAILMAE----RPTA--------DAIFARLVEH----- 273
Query: 341 LLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPH 400
+ T+F Y L A+ +V + +R+ S L
Sbjct: 274 --RPTVF-----YGVPTL-----------YANMLVSPNLPARADVAIRICTSAGEALPRE 315
Query: 401 V-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI--GTVGPPVPNVDVCLESVPEM 457
+ E F C +L G G TE + L N + GT G PVP ++ E+
Sbjct: 316 IGERFTAHFGC-EILDGIGSTEML---HIFLSNRAGAVEYGTTGRPVPGYEI------EL 365
Query: 458 EYDALSSTPRGEVC---VKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKII 514
+A + P GEV +KG + Y+ + ++ + W +GD P+G
Sbjct: 366 RDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYA 425
Query: 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYG 551
R ++ K+S G+YV+ +E + A+ V G
Sbjct: 426 GRSDDMLKVS-GQYVSPVEVEMVLVQHDAVLEAAVVG 461
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 8/153 (5%)
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVP 445
++++ G A + ++ V + Q +G+ E T + P E+ ++ T G P+
Sbjct: 300 LQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI-IVNTQGKPMS 358
Query: 446 NVDVCLESVPEMEYDA-LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIG 503
D ES ++D + G + +G GYYK E+ DG++ TGDI
Sbjct: 359 PYD---ESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIV 415
Query: 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLEN 536
DG + + R K+ GE VA E +EN
Sbjct: 416 RLTRDGYIVVEGRAKDQINRG-GEKVAAEEVEN 447
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 6/153 (3%)
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPV-P 445
++L+ G A L+ + + + Q +G+ E + +I T G P+ P
Sbjct: 304 LKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCP 363
Query: 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGE 504
+ +V V + E + L G + +G F GYYK +G++ +GD+
Sbjct: 364 DDEVW---VADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS 420
Query: 505 WQPDGSLKIIDRKKNIFKLSQGEYVAVENLENI 537
P+G + + R+K+ GE +A E +EN+
Sbjct: 421 IDPEGYITVQGREKDQINRG-GEKIAAEEIENL 452
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250
K +D I++TSGTTG PKGV +S++N+++F
Sbjct: 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSF 173
Score = 35.8 bits (81), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 47/110 (42%), Gaps = 11/110 (10%)
Query: 410 CAHVLQGYGLTE-TCAGTFVSLPNEMSMIGT---VGPPVPNVDVCLESVPEMEYDALSST 465
A ++ YG TE T A + + + EM T +G P P+ + + + LSS
Sbjct: 290 SAKIINAYGPTEATVALSAIEITREMVDNYTRLPIGYPKPDSPTY---IIDEDGKELSSG 346
Query: 466 PRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTGDIGEWQPDGSL 511
+GE+ V G V GY + T E +HTGDIG D L
Sbjct: 347 EQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTEDNIL 396
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 38.9 bits (89), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQG 526
G + +G GYYK E+ DG++ TGDI DG + + R K+ G
Sbjct: 379 GHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRG-G 437
Query: 527 EYVAVENLEN 536
E VA E +EN
Sbjct: 438 EKVAAEEVEN 447
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 68/165 (41%), Gaps = 19/165 (11%)
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLT-PHVETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
+ D+V ++F G VR ++G P + PHV R + GYG E+ T
Sbjct: 315 NFLVDEVPEAFEG-VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373
Query: 432 NEMSMIGTVGPPVPNVDVCLES----VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ GT P + V L V + + ++ GE+ V G+ + GY R L
Sbjct: 374 VAGDLSGTALP----IGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPAL 429
Query: 488 TKEVMV---------DGWFHTGDIGEWQPDGSLKIIDRKKNIFKL 523
T E V + + TGD+ + DG L+ + R + K+
Sbjct: 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKI 474
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIV 248
D+ +M+TSG+TG PKGVM + +
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALT 240
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 36.2 bits (82), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 65/158 (41%), Gaps = 19/158 (12%)
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLT-PHVETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
+ D+V ++F G VR ++G P + PHV R + GYG E+ T
Sbjct: 315 NFLVDEVPEAFEG-VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373
Query: 432 NEMSMIGTVGPPVPNVDVCLES----VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ GT P + V L V + + ++ GE+ V G+ + GY R L
Sbjct: 374 VAGDLSGTALP----IGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPAL 429
Query: 488 TKEVMV---------DGWFHTGDIGEWQPDGSLKIIDR 516
T E V + + TGD+ + DG L+ + R
Sbjct: 430 TAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGR 467
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIV 248
D+ +M+TSG+TG PKGVM + +
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALT 240
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 35.8 bits (81), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 11/181 (6%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLK----TIVSFSKVKPEQREE 191
AV I S + ++ + ++ P + LK T V V +
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGV-RAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSD 226
Query: 192 IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
I+ W + ++ + + D I+YTSG+TG PKGV+ + + +
Sbjct: 227 IDWQEGRDLWWRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYA 285
Query: 252 A 252
A
Sbjct: 286 A 286
>pdb|1ZRT|E Chain E, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|R Chain R, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 191
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICH 148
E R G N EW++ + C LG CVP+ D G F CH
Sbjct: 111 ENRTLPAFDGTNTGEWLVMLGVCTHLG--CVPMGDKSGDFGGWFCPCH 156
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 30.8 bits (68), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 227 IMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ YTSG+T P GV++S++N+ V F + + VS+LP H
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH 241
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 231 SGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV-YVSYLPLAHIFDRAIEEVF 289
+ T G+ V VS T V C L S NEK + Y+ L L + DR +
Sbjct: 119 ANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFD 178
Query: 290 ISNGAAIGFWRGDVKLLLE-DIGEL 313
IS FW GD+ L+ DI E+
Sbjct: 179 ISLRFTHLFWFGDLNYRLDMDIQEI 203
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,813,593
Number of Sequences: 62578
Number of extensions: 918290
Number of successful extensions: 2152
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1993
Number of HSP's gapped (non-prelim): 116
length of query: 663
length of database: 14,973,337
effective HSP length: 105
effective length of query: 558
effective length of database: 8,402,647
effective search space: 4688677026
effective search space used: 4688677026
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)