Query 006047
Match_columns 663
No_of_seqs 174 out of 2229
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:33:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006047.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006047hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 4.5E-74 1.5E-78 639.5 47.2 516 35-649 10-543 (549)
2 3ni2_A 4-coumarate:COA ligase; 100.0 7.5E-74 2.6E-78 635.8 44.9 522 21-648 3-535 (536)
3 1mdb_A 2,3-dihydroxybenzoate-A 100.0 9.9E-74 3.4E-78 635.0 45.2 504 43-656 24-539 (539)
4 3etc_A AMP-binding protein; ad 100.0 4.2E-73 1.4E-77 634.0 47.1 509 41-648 53-579 (580)
5 1t5h_X 4-chlorobenzoyl COA lig 100.0 2.4E-72 8.1E-77 619.3 48.7 489 43-647 1-503 (504)
6 3r44_A Fatty acyl COA syntheta 100.0 1.6E-72 5.4E-77 622.1 45.8 499 39-649 11-514 (517)
7 1v25_A Long-chain-fatty-acid-C 100.0 6.6E-73 2.3E-77 628.7 42.2 501 44-648 18-536 (541)
8 3rix_A Luciferase, luciferin 4 100.0 5.9E-73 2E-77 630.6 39.1 520 37-652 13-545 (550)
9 2d1s_A Luciferase, luciferin 4 100.0 3.4E-72 1.2E-76 623.5 44.7 524 24-652 9-547 (548)
10 3o83_A Peptide arylation enzym 100.0 1.6E-72 5.4E-77 626.0 41.0 500 43-648 29-540 (544)
11 3c5e_A Acyl-coenzyme A synthet 100.0 2.7E-71 9.2E-76 618.6 50.3 510 41-650 35-564 (570)
12 1pg4_A Acetyl-COA synthetase; 100.0 1.3E-71 4.3E-76 630.6 46.3 521 43-651 75-624 (652)
13 4fuq_A Malonyl COA synthetase; 100.0 8.7E-72 3E-76 614.1 40.8 491 48-648 4-500 (503)
14 1ry2_A Acetyl-coenzyme A synth 100.0 5.1E-71 1.7E-75 625.9 44.1 530 43-652 81-641 (663)
15 3e7w_A D-alanine--poly(phospho 100.0 1.4E-70 4.7E-75 606.3 46.0 487 44-649 1-504 (511)
16 3ivr_A Putative long-chain-fat 100.0 1.9E-71 6.4E-76 613.1 39.0 492 42-649 4-502 (509)
17 3fce_A D-alanine--poly(phospho 100.0 1.2E-70 4E-75 607.2 42.8 488 44-649 1-505 (512)
18 4gr5_A Non-ribosomal peptide s 100.0 3.8E-71 1.3E-75 618.5 36.5 479 40-645 71-568 (570)
19 2v7b_A Benzoate-coenzyme A lig 100.0 9.5E-70 3.2E-74 602.4 45.2 501 41-644 21-528 (529)
20 3rg2_A Enterobactin synthase c 100.0 2.3E-69 7.9E-74 609.4 47.7 502 42-652 25-538 (617)
21 3l8c_A D-alanine--poly(phospho 100.0 5.2E-70 1.8E-74 603.5 41.1 493 43-650 3-514 (521)
22 1amu_A GRSA, gramicidin synthe 100.0 1.5E-69 5.2E-74 603.5 41.5 476 41-646 36-527 (563)
23 4dg8_A PA1221; ANL superfamily 100.0 1.2E-69 3.9E-74 609.6 40.3 473 41-648 24-513 (620)
24 3ipl_A 2-succinylbenzoate--COA 100.0 1.3E-69 4.3E-74 597.5 36.7 491 45-649 2-498 (501)
25 3tsy_A Fusion protein 4-coumar 100.0 1.8E-69 6.1E-74 641.4 38.7 537 20-656 41-590 (979)
26 3nyq_A Malonyl-COA ligase; A/B 100.0 2.4E-69 8E-74 594.7 33.2 476 42-644 20-504 (505)
27 3gqw_A Fatty acid AMP ligase; 100.0 2.2E-67 7.7E-72 590.3 45.4 518 31-658 8-573 (576)
28 3kxw_A Saframycin MX1 syntheta 100.0 1.1E-67 3.7E-72 594.4 39.5 505 40-648 7-567 (590)
29 3ite_A SIDN siderophore synthe 100.0 6.2E-68 2.1E-72 592.2 35.5 525 37-656 13-552 (562)
30 2vsq_A Surfactin synthetase su 100.0 1.3E-64 4.4E-69 614.6 45.1 477 43-645 463-957 (1304)
31 3t5a_A Long-chain-fatty-acid-- 100.0 2E-55 6.8E-60 482.1 35.2 403 40-516 20-480 (480)
32 4gs5_A Acyl-COA synthetase (AM 100.0 1.6E-48 5.5E-53 408.7 23.6 314 221-650 36-356 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 2.9E-42 1E-46 372.4 27.9 332 218-640 81-429 (436)
34 2y4o_A Phenylacetate-coenzyme 100.0 3.2E-42 1.1E-46 372.9 26.9 338 217-643 87-439 (443)
35 2y27_A Phenylacetate-coenzyme 100.0 1.2E-41 4.1E-46 367.7 29.5 335 217-641 85-432 (437)
36 3hgu_A EHPF; phenazine, antibi 99.9 1.5E-26 5.3E-31 243.6 20.1 238 218-523 87-365 (369)
37 3lax_A Phenylacetate-coenzyme 99.2 3.1E-11 1E-15 102.3 8.5 98 515-639 1-101 (109)
38 3gxs_A Phenylacetate-coenzyme 99.1 3.2E-10 1.1E-14 95.7 8.3 99 515-640 1-102 (109)
39 4eql_A 4-substituted benzoates 98.8 2E-07 6.7E-12 100.9 19.2 132 387-541 302-447 (581)
40 4b2g_A GH3-1 auxin conjugating 98.7 3.5E-07 1.2E-11 99.1 18.3 155 387-564 307-492 (609)
41 4epl_A Jasmonic acid-amido syn 98.5 3.7E-06 1.3E-10 90.8 20.5 158 385-565 302-488 (581)
42 2y27_A Phenylacetate-coenzyme 91.3 1.1 3.8E-05 46.9 11.5 107 57-166 88-198 (437)
43 2y4o_A Phenylacetate-coenzyme 90.7 1.3 4.4E-05 46.5 11.3 107 57-166 90-200 (443)
44 3qov_A Phenylacetate-coenzyme 90.7 1.5 5E-05 45.9 11.7 123 59-184 86-217 (436)
45 3ipl_A 2-succinylbenzoate--COA 86.7 6.3 0.00021 41.8 13.5 121 57-183 161-284 (501)
46 3hgu_A EHPF; phenazine, antibi 80.4 4.6 0.00016 40.9 8.7 104 57-164 89-219 (369)
47 2d1s_A Luciferase, luciferin 4 78.5 9.1 0.00031 41.2 10.7 121 59-183 192-319 (548)
48 1mdb_A 2,3-dihydroxybenzoate-A 76.7 29 0.00098 37.1 14.1 122 57-184 180-309 (539)
49 3fce_A D-alanine--poly(phospho 73.2 19 0.00066 38.1 11.5 122 57-183 142-271 (512)
50 3rix_A Luciferase, luciferin 4 69.9 17 0.00058 39.0 10.2 122 59-183 190-317 (550)
51 3r44_A Fatty acyl COA syntheta 69.8 22 0.00075 37.8 11.0 101 58-165 169-273 (517)
52 4dg8_A PA1221; ANL superfamily 69.7 14 0.00047 40.5 9.5 122 57-184 162-287 (620)
53 3e7w_A D-alanine--poly(phospho 69.1 35 0.0012 36.0 12.4 122 57-183 141-270 (511)
54 3o83_A Peptide arylation enzym 68.4 25 0.00087 37.5 11.1 104 57-166 189-297 (544)
55 3kxw_A Saframycin MX1 syntheta 67.9 23 0.00079 38.2 10.8 122 57-183 165-299 (590)
56 4gr5_A Non-ribosomal peptide s 66.2 19 0.00064 38.9 9.6 122 57-184 212-337 (570)
57 3g7s_A Long-chain-fatty-acid-- 66.0 50 0.0017 35.2 12.9 105 221-330 33-140 (549)
58 3ivr_A Putative long-chain-fat 65.8 41 0.0014 35.4 12.1 105 57-167 158-265 (509)
59 1v25_A Long-chain-fatty-acid-C 63.6 57 0.002 34.7 12.8 99 221-328 32-133 (541)
60 3ni2_A 4-coumarate:COA ligase; 63.0 42 0.0014 35.7 11.5 101 220-330 35-137 (536)
61 4gs5_A Acyl-COA synthetase (AM 61.9 29 0.00099 34.8 9.4 110 46-166 27-139 (358)
62 3rg2_A Enterobactin synthase c 61.5 95 0.0033 33.6 14.3 121 58-184 183-313 (617)
63 3c5e_A Acyl-coenzyme A synthet 60.3 59 0.002 34.9 12.2 123 57-184 204-333 (570)
64 3t5a_A Long-chain-fatty-acid-- 59.8 73 0.0025 33.0 12.6 105 220-329 37-147 (480)
65 1ry2_A Acetyl-coenzyme A synth 59.2 61 0.0021 35.6 12.2 98 220-324 95-196 (663)
66 1t5h_X 4-chlorobenzoyl COA lig 58.6 68 0.0023 33.6 12.2 97 221-327 16-116 (504)
67 1amu_A GRSA, gramicidin synthe 57.0 71 0.0024 34.2 12.1 83 240-326 63-148 (563)
68 3etc_A AMP-binding protein; ad 54.8 61 0.0021 34.9 11.1 97 220-323 69-167 (580)
69 3nyq_A Malonyl-COA ligase; A/B 54.3 47 0.0016 35.0 9.9 103 57-166 153-259 (505)
70 4fuq_A Malonyl COA synthetase; 53.0 76 0.0026 33.3 11.3 85 240-328 27-114 (503)
71 1pg4_A Acetyl-COA synthetase; 52.9 87 0.003 34.2 12.1 97 221-323 90-188 (652)
72 2v7b_A Benzoate-coenzyme A lig 49.5 66 0.0023 34.0 10.3 87 240-329 47-135 (529)
73 3tbh_A O-acetyl serine sulfhyd 43.7 83 0.0028 31.1 9.2 66 94-159 61-127 (334)
74 2vsq_A Surfactin synthetase su 43.5 48 0.0016 39.9 8.6 122 57-184 605-731 (1304)
75 3l8c_A D-alanine--poly(phospho 41.7 1.1E+02 0.0038 32.1 10.5 81 240-323 28-110 (521)
76 3tsy_A Fusion protein 4-coumar 39.7 1.1E+02 0.0039 35.2 10.9 98 220-328 74-174 (979)
77 3ezx_A MMCP 1, monomethylamine 35.9 2.5E+02 0.0086 25.5 11.0 53 268-320 93-149 (215)
78 3gqw_A Fatty acid AMP ligase; 35.1 1.8E+02 0.0063 30.7 11.0 87 239-328 47-142 (576)
79 3ist_A Glutamate racemase; str 35.1 1.2E+02 0.004 28.9 8.3 63 48-117 19-81 (269)
80 3vc3_A Beta-cyanoalnine syntha 34.9 1.3E+02 0.0043 29.9 8.9 69 91-159 74-142 (344)
81 3ite_A SIDN siderophore synthe 33.5 2.7E+02 0.0091 29.4 12.0 99 220-323 33-135 (562)
82 4eez_A Alcohol dehydrogenase 1 29.7 2E+02 0.0068 28.1 9.5 77 78-157 136-215 (348)
83 3ju7_A Putative PLP-dependent 27.6 1.2E+02 0.0041 30.3 7.5 60 94-156 69-135 (377)
84 4aec_A Cysteine synthase, mito 25.0 2.5E+02 0.0085 28.8 9.2 63 96-158 166-229 (430)
85 2gzm_A Glutamate racemase; enz 23.7 2.9E+02 0.0099 26.0 8.9 62 48-116 17-78 (267)
86 1o69_A Aminotransferase; struc 23.1 2.6E+02 0.0088 27.8 9.0 59 96-157 65-129 (394)
87 4h1h_A LMO1638 protein; MCCF-l 22.6 1E+02 0.0034 30.4 5.5 63 99-161 8-89 (327)
88 3ijw_A Aminoglycoside N3-acety 22.4 1.1E+02 0.0038 29.1 5.5 23 90-112 19-41 (268)
89 1eg5_A Aminotransferase; PLP-d 22.0 2.6E+02 0.009 27.2 8.9 55 101-156 87-145 (384)
90 2ayi_A Aminopeptidase T; metal 21.8 1.7E+02 0.0059 29.7 7.2 51 84-134 4-58 (408)
91 1zuw_A Glutamate racemase 1; ( 21.6 3.2E+02 0.011 25.8 8.8 62 48-116 17-79 (272)
92 3goh_A Alcohol dehydrogenase, 21.3 1.8E+02 0.0061 28.0 7.1 73 78-155 115-190 (315)
93 3uhf_A Glutamate racemase; str 21.2 1.2E+02 0.0041 29.0 5.5 63 48-117 38-100 (274)
94 2q3b_A Cysteine synthase A; py 21.0 3.7E+02 0.013 25.9 9.3 77 80-159 45-122 (313)
95 1ofu_X SULA, hypothetical prot 20.6 2.8E+02 0.0097 22.5 6.9 53 91-143 46-100 (119)
96 2jfz_A Glutamate racemase; cel 20.2 1.3E+02 0.0045 28.2 5.6 61 48-115 14-74 (255)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=4.5e-74 Score=639.45 Aligned_cols=516 Identities=22% Similarity=0.288 Sum_probs=397.3
Q ss_pred CCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCC--CCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCC
Q 006047 35 GFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGK--AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN 112 (663)
Q Consensus 35 ~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~--~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n 112 (663)
++|.......++.++|.++++++||++|+++. ++. .+..+++||+||.++++++|++|.+.|+++||+|+|+++|
T Consensus 10 ~~p~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~ 86 (549)
T 3g7s_A 10 GFPSLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPN 86 (549)
T ss_dssp CCCCCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCS
T ss_pred CCCCCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCC
Confidence 45555556789999999999999999999987 421 2345789999999999999999999999999999999999
Q ss_pred chhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHH
Q 006047 113 CPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (663)
Q Consensus 113 ~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 192 (663)
++++++++|||+++|++++|+++.++.+++.++|+.++++++|++......+....... .+..++..+..
T Consensus 87 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~-------- 156 (549)
T 3g7s_A 87 SIDYVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE-------- 156 (549)
T ss_dssp SHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS--------
T ss_pred CHHHHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC--------
Confidence 99999999999999999999999999999999999999999999988776665544332 34566655432
Q ss_pred hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEE
Q 006047 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYV 272 (663)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~ 272 (663)
..++.++...............++++++++|||||||.||||+++|+++.+.+..+...+ ++.++|+++
T Consensus 157 ------~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~ 225 (549)
T 3g7s_A 157 ------VNSLSEVMDSGSEDFENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIV 225 (549)
T ss_dssp ------SSCHHHHHHHSCSCCCCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEE
T ss_pred ------CcCHHHHHhcCccccccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEE
Confidence 234566665443321222222348999999999999999999999999999999888777 889999999
Q ss_pred EcCChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006047 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (663)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (663)
+++|++|.+++..++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++........
T Consensus 226 ~~~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~------------- 292 (549)
T 3g7s_A 226 GCMPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT------------- 292 (549)
T ss_dssp CCSCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC-------------
T ss_pred EeCcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc-------------
Confidence 99999999999888888999999999876 9999999999999999999999999987754332100
Q ss_pred HhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHh----cC---Cceeeccccccccc
Q 006047 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC---AHVLQGYGLTETCA 424 (663)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~----~~---~~v~~~yG~tE~~~ 424 (663)
...+++|.+++||+++++++.+.+.+. ++ ..+++.||+||++.
T Consensus 293 ------------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~ 342 (549)
T 3g7s_A 293 ------------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACP 342 (549)
T ss_dssp ------------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSS
T ss_pred ------------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccch
Confidence 011589999999999999999999887 56 89999999999998
Q ss_pred ceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc---cCC--ceec
Q 006047 425 GTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM---VDG--WFHT 499 (663)
Q Consensus 425 ~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~---~~g--~~~T 499 (663)
+++...........++|.|+++++++|+|.+++. +++.|+.|||+|+|++++.||+++++.+++.| .+| ||+|
T Consensus 343 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~T 420 (549)
T 3g7s_A 343 MVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR--ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRT 420 (549)
T ss_dssp EEEECCGGGGGGTTSCCEECTTCEEEEECSSSCC--EECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEE
T ss_pred hhhcCCccccCcCCCccccCCCCEEEEEeCCCCc--CCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEcc
Confidence 8777665554556899999999999999955554 45677999999999999999999999999988 677 9999
Q ss_pred CcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHc
Q 006047 500 GDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAEN 576 (663)
Q Consensus 500 GDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~ 576 (663)
||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 421 GDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~------- 492 (549)
T 3g7s_A 421 GDVGFIDEEGFLHFQDRVKEVIKY-KGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYR------- 492 (549)
T ss_dssp EEEEEECTTSCEEEEEEC-------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTT-------
T ss_pred CcEEEEcCCceEEEeccccceEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCcc-------
Confidence 999999999999999999999997 8999999999999999999999999997654 57899999876420
Q ss_pred CCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 577 GVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
... ..++|+++++ .+|+.|++|+.|++++.. |+|++||++|++|++++.+.
T Consensus 493 -----------~~~----~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~ 543 (549)
T 3g7s_A 493 -----------GKV----DEEDIIEWVR-ERISGYKRVREVEFVEEL------PRTASGKLLRRLLREKEAEG 543 (549)
T ss_dssp -----------TSC----CHHHHHHHHH-TTCC-----CCCCEEEEC------C-------------------
T ss_pred -----------CcC----CHHHHHHHHH-HhccCcccceEEEEeccC------CCCCCcCEeHHHHHHHhhcc
Confidence 000 1234555555 789999999999998665 89999999999999988653
No 2
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=7.5e-74 Score=635.82 Aligned_cols=522 Identities=23% Similarity=0.267 Sum_probs=424.1
Q ss_pred CCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCC
Q 006047 21 PSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100 (663)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv 100 (663)
|....+|++...+..+| ...++.++|.++++++||++|+++. ++. +++||+||.++++++|++|++.|+
T Consensus 3 ~~~~~i~~~~~~~~~~p----~~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv 71 (536)
T 3ni2_A 3 PQEEFIFRSKLPDIYIP----KNLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGI 71 (536)
T ss_dssp --CCCCBCCSSCCCCCC----SSCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred cccceEEecCCCCCCCC----CCCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCC
Confidence 44556777766444433 3488999999999999999999864 322 679999999999999999999999
Q ss_pred CCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEE
Q 006047 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180 (663)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~ 180 (663)
++||+|+++++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+....... . ..++.
T Consensus 72 ~~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~-~~~~~ 148 (536)
T 3ni2_A 72 QQGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--D-VKVMC 148 (536)
T ss_dssp CTTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--T-CEEEE
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--C-ceEEE
Confidence 99999999999999999999999999999999999999999999999999999999987666554432211 1 23444
Q ss_pred ecCCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhh
Q 006047 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLES 260 (663)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~ 260 (663)
++.... ...+++++...... ..+.....++++++++|||||||.||||++||+++++.+........
T Consensus 149 ~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~~- 215 (536)
T 3ni2_A 149 VDSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGDN- 215 (536)
T ss_dssp SSCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSSS-
T ss_pred ecCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhcc-
Confidence 443211 13456666554332 23344567899999999999999999999999999988776543210
Q ss_pred ccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhc
Q 006047 261 VNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISS 338 (663)
Q Consensus 261 ~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~ 338 (663)
....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 216 ~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------ 289 (536)
T 3ni2_A 216 PNLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------ 289 (536)
T ss_dssp CSSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS------
T ss_pred ccccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc------
Confidence 0125788999999999999999965 6788999999999876 9999999999999999999999999876421
Q ss_pred CChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecc
Q 006047 339 GGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGY 417 (663)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~y 417 (663)
... ...++++|.+++||+++++++.+.+++.+ ++++++.|
T Consensus 290 -------------------------------~~~--------~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~Y 330 (536)
T 3ni2_A 290 -------------------------------DLD--------KHDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGY 330 (536)
T ss_dssp -------------------------------CGG--------GSCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEE
T ss_pred -------------------------------ccc--------cCCCccceEEEECCCCCCHHHHHHHHHHCCCCCccccc
Confidence 011 11226899999999999999999999888 89999999
Q ss_pred cccccccceeccC----CCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-
Q 006047 418 GLTETCAGTFVSL----PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492 (663)
Q Consensus 418 G~tE~~~~~~~~~----~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~- 492 (663)
|+||++.+++.+. .......+++|.|+++++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+.+.|
T Consensus 331 G~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~ 408 (536)
T 3ni2_A 331 GMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETG--ASLPRNQPGEICIRGDQIMKGYLNDPEATSRTID 408 (536)
T ss_dssp ECGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred cccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCC--cCCCCCCccEEEEeCcccchhhcCChhHHHhhcc
Confidence 9999987655432 112234588999999999999993334 455678999999999999999999999999999
Q ss_pred cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHH
Q 006047 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDAL 569 (663)
Q Consensus 493 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~ 569 (663)
.+|||+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 409 ~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~- 486 (536)
T 3ni2_A 409 KEGWLHTGDIGYIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKS- 486 (536)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEECSCCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-
T ss_pred CCCceEcccEEEEcCCceEEEEecccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCC-
Confidence 7899999999999999999999999999997 8999999999999999999999999997644 5889999987642
Q ss_pred HHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 570 ERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.. ..++|+++++ +.|+.|++|++|++++.. |+|++||++|++|+++|+.
T Consensus 487 -----------------~~------~~~~l~~~l~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~R~~L~~~~~~ 535 (536)
T 3ni2_A 487 -----------------QA------TEDEIKQYIS-KQVIFYKRIKRVFFIEAI------PKAPSGKILRKNLKEKLAG 535 (536)
T ss_dssp -----------------CC------CHHHHHHHHH-TTSCGGGCCSEEEECSCC------CBCTTSCBCHHHHHTC---
T ss_pred -----------------CC------CHHHHHHHHH-HhccCCccccEEEEEecC------CCCCCCCeeHHHHHHHhcc
Confidence 00 0134555665 789999999999999765 8999999999999998764
No 3
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=9.9e-74 Score=634.97 Aligned_cols=504 Identities=17% Similarity=0.203 Sum_probs=413.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+|+++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG---N------THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC---C------CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh----hHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
|+++|++++|+++.++.+++.++++.++++++|+++.... ..........+.++.++..+....
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999875321 111111111133444554433110
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
+.++.... ..........++++++++|||||||.||||+++|+++++.+......+ +++++|++++.+|++
T Consensus 163 ---~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 163 ---FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp ---SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred ---hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 11111111 111123445779999999999999999999999999999988877776 788999999999999
Q ss_pred hHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++.....
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 293 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSR-------------------- 293 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHC--------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCcccc--------------------
Confidence 9999874 7788999999999876 8999999999999999999999999987643221
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
...++++|.+++||+++++++.+++++.+++++++.||+||++..+.........
T Consensus 294 -------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 294 -------------------------RDDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp -------------------------CCCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -------------------------CCCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 0112589999999999999999999988899999999999965433322211122
Q ss_pred ccCccCccccC-eEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEE
Q 006047 436 MIGTVGPPVPN-VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 436 ~~~~~G~p~~~-~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 513 (663)
...++|+|+++ .+++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++|+||+|++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 425 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDR--DVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVV 425 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEEE
T ss_pred cCCCCCcccCCCceEEEEC-CCCC--CCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEECCCCcEEE
Confidence 34789999975 5899999 6654 55677999999999999999999999999999 699999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++. .+
T Consensus 426 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~------------------~~-- 484 (539)
T 1mdb_A 426 EGRAKDQINR-GGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA------------------PK-- 484 (539)
T ss_dssp EEEGGGCEEC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSSC------------------CC--
T ss_pred eccccceEEE-CCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECCCC------------------CC--
Confidence 9999999996 8999999999999999999999999997654 5889999877421 01
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHHHhcc
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSE 656 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~~~~ 656 (663)
.++|++++++..|+.|++|+.|++++.. |+|++||++|++|+++|.+.++++|++
T Consensus 485 -----~~~l~~~l~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~i~~~y~~ 539 (539)
T 1mdb_A 485 -----AAELKAFLRERGLAAYKIPDRVEFVESF------PQTGVGKVSKKALREAISEKLLAGFKK 539 (539)
T ss_dssp -----HHHHHHHHHHTTCCGGGSCSEEEECSSC------CBCTTSCBCHHHHHHHHHHHHHTC---
T ss_pred -----HHHHHHHHHhCCCCcccCCCEEEEeccC------CCCCCcCEeHHHHHHHHHHHHhccccC
Confidence 2445566663349999999999999665 899999999999999999999999973
No 4
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=4.2e-73 Score=634.01 Aligned_cols=509 Identities=18% Similarity=0.178 Sum_probs=402.4
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
..++.++++|+++|+.+||++|+++. +. .+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~-~g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DD-YGNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ES-SSCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cC-CCCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 34556669999999999999999986 43 234478999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCCh--hhHhhcCCCcCCCC-cEEEEecCCChhhHHHHhhcCc
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--PEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGL 197 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~--~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~ 197 (663)
|||+++|++++|+++.++.+++.++++.++++++|++.+.. ..+....... +.+ ..++.++.... .
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~ 197 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDVL----------E 197 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSCC----------T
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCccc----------c
Confidence 99999999999999999999999999999999999988754 3333322211 222 34555543211 1
Q ss_pred EEEeHHHHHhcccccCCCC---CCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEc
Q 006047 198 AVYSWDEFLQLGENKQFDL---PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (663)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~ 274 (663)
.+.++.+.+.........+ ....++++++++|||||||.||+|.++|.+++..+......+ ++.+++++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~ 272 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQ-----NVEDDGLHYTV 272 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHHTTS-----CCCTTCEEEEC
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHHHhh-----CCCCCceEEEe
Confidence 2456666665443321111 246789999999999999999999999999888776655444 78899999999
Q ss_pred CChhhHHHHHH-HHHHHHcCcEEEEEc---CCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006047 275 LPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (663)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (663)
.|++|..+... ++.++..|+++++.+ .++..+++.|+++++|+++++|+++..+.+..
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------ 334 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------ 334 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------
Confidence 99999888765 677899999998874 28999999999999999999999999876410
Q ss_pred HHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccC
Q 006047 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (663)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 430 (663)
. ....+++||.+++||+++++++.+++.+.+|+++++.||+||++..+....
T Consensus 335 --------------------~--------~~~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 335 --------------------L--------SHYNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp --------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred --------------------c--------ccCCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 0 011226899999999999999999999989999999999999987666554
Q ss_pred CCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc-----CcccccccCChhhhhccccCCceecCcEEEE
Q 006047 431 PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG-----STVFSGYYKREDLTKEVMVDGWFHTGDIGEW 505 (663)
Q Consensus 431 ~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g-----~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 505 (663)
.. ....+++|+|+|+++++|+| +++. +++.|+.|||+|+| +.++.||+++++.+++.|.+|||+|||+|++
T Consensus 387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~--~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~ 462 (580)
T 3etc_A 387 WM-EPKPGSIGKPTPGYKIELMD-RDGR--LCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM 462 (580)
T ss_dssp TS-CCCTTCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred CC-CCCCCccccCCCCCEEEEEC-CCCC--CCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence 33 33458999999999999999 6665 45667999999997 7899999999999999999999999999999
Q ss_pred cCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCCh
Q 006047 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDF 582 (663)
Q Consensus 506 ~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~ 582 (663)
|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 463 d~dG~l~~~GR~dd~Ik~-~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~------------- 528 (580)
T 3etc_A 463 DEDGYLWFVGRADDIIKT-SGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYT------------- 528 (580)
T ss_dssp CTTSCEEEEEESSSCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCC-------------
T ss_pred CCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCC-------------
Confidence 999999999999999997 7999999999999999999999999997754 58899999887430
Q ss_pred hhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 583 KSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 583 ~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.. +.+.++|+++++ ..|++|++|+.|++++.. |+|++|||+|++|++++++
T Consensus 529 ----~~----~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~sGKi~R~~Lr~~~~~ 579 (580)
T 3etc_A 529 ----PS----DSLKNELQDHVK-NVTAPYKYPRIIEFVPEL------PKTISGKIRRVEIRDKDQS 579 (580)
T ss_dssp ----CC----HHHHHHHHHHHH-HHSCGGGCCSEEEEECC--------------------------
T ss_pred ----CC----HHHHHHHHHHHH-hhCCCccCCeEEEEeCCC------CCCCCcCCcHHHHHhHhhc
Confidence 11 223455666666 679999999999999765 8999999999999998864
No 5
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=2.4e-72 Score=619.29 Aligned_cols=489 Identities=19% Similarity=0.244 Sum_probs=401.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
|+|+.++|.++++++||++|+.+. +.. +++||+||.++++++|++|++.|+++||+|+++++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 578999999999999999999864 222 6899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEE--cCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV--EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~--~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|+++|++++|+++.++.+++.++++.++++++|+ +......+..... .++ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~----~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSGS----GAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHCC----CCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhccc----cce-eE---------------------
Confidence 9999999999999999999999999999999999 6654443312221 111 22
Q ss_pred eHHHHHhccc----ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccC--CCCcEEEEc
Q 006047 201 SWDEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSY 274 (663)
Q Consensus 201 ~~~~~~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~--~~~d~~~~~ 274 (663)
.++++..... ..........++++++++|||||||.||||.++|+++.+.+..+...+ ++ .+++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 2222222110 111112345679999999999999999999999999999888876655 56 789999999
Q ss_pred CChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006047 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (663)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (663)
+|++|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+.......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------- 267 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS--------------- 267 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTC---------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccc---------------
Confidence 99999999854 7888999999999876 899999999999999999999999998753211000
Q ss_pred hhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCC
Q 006047 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (663)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~ 432 (663)
...++++|.+++||+++++++.+.+++.++..+++.||+||++.. ....
T Consensus 268 ----------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~-~~~~-- 316 (504)
T 1t5h_X 268 ----------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAMNS-LYMR-- 316 (504)
T ss_dssp ----------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTEEE-EEEE--
T ss_pred ----------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccccc-cccc--
Confidence 001258999999999999999999999999999999999999432 2222
Q ss_pred CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEc-cCcccccccCChhhhhccccCCceecCcEEEEcCCCcE
Q 006047 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSL 511 (663)
Q Consensus 433 ~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~-g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l 511 (663)
....+++|.|.+++++++++..++...+++.|+.|||+|+ |+.++.||+++++.+.+.|.+|||+|||+|++|+||+|
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~~dG~l 395 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTV 395 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCE
T ss_pred -CCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEECCCceE
Confidence 1234789999999999999933333356778899999999 99999999999999999999999999999999999999
Q ss_pred EEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcC
Q 006047 512 KIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCEN 588 (663)
Q Consensus 512 ~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (663)
+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++. . .+
T Consensus 396 ~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~----------~-------~~ 457 (504)
T 1t5h_X 396 RILGRVDDMIIS-GGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGE----------T-------LS 457 (504)
T ss_dssp EEEEEGGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTC----------C-------CC
T ss_pred EEeCcccCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCc----------C-------cC
Confidence 999999999996 8999999999999999999999999997754 5899999987642 0 00
Q ss_pred hHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHH
Q 006047 589 PKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQ 647 (663)
Q Consensus 589 ~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~ 647 (663)
.++|++++++++|+.|++|++|++++.. |+|++||++|++|+++|+
T Consensus 458 -------~~~l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~ 503 (504)
T 1t5h_X 458 -------ADALDTFCRSSELADFKRPKRYFILDQL------PKNALNKVLRRQLVQQVS 503 (504)
T ss_dssp -------HHHHHHHHHTSSCCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHC
T ss_pred -------HHHHHHHHhhccCcccccceEEEEhhhC------CCCCCCCEeHHHHHHHhc
Confidence 2455666662389999999999999765 899999999999998874
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=1.6e-72 Score=622.08 Aligned_cols=499 Identities=23% Similarity=0.304 Sum_probs=409.6
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHH
Q 006047 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (663)
Q Consensus 39 ~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (663)
..+...|+.++|.++++.+|+++|+++. +.. +++||+||.++++++|++|.+.|+++||+|+|+++|++++++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 83 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCC 83 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHH
Confidence 3456789999999999999999999875 322 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 119 ~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
++|||+++|++++|+++.++.+++.++++.++++++|++......+....... .....++.+..
T Consensus 84 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------- 147 (517)
T 3r44_A 84 LFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG--------------- 147 (517)
T ss_dssp HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------
T ss_pred HHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------
Confidence 99999999999999999999999999999999999999987765544332211 11111111110
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
..++.+.+.... ...+.....++++++++|||||||.||||++||+++.+.+......+ +++++|++++.+|++
T Consensus 148 ~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 221 (517)
T 3r44_A 148 ADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMF 221 (517)
T ss_dssp HHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTT
T ss_pred cccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchH
Confidence 011233333222 12334456789999999999999999999999999999998887777 789999999999999
Q ss_pred hHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhh
Q 006047 279 HIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (663)
Q Consensus 279 ~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (663)
|.+++...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+....
T Consensus 222 ~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~----------------------- 278 (517)
T 3r44_A 222 HVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEF----------------------- 278 (517)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHH-----------------------
T ss_pred HHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCccc-----------------------
Confidence 99999876666559999998876 999999999999999999999999988653211
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC-ccc
Q 006047 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSM 436 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~ 436 (663)
....++++|.+++||+++++++.+.+.+. ++++++.||+||++..++...... ...
T Consensus 279 ----------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 335 (517)
T 3r44_A 279 ----------------------AELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRK 335 (517)
T ss_dssp ----------------------HHCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTT
T ss_pred ----------------------ccCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCcccccc
Confidence 11223689999999999999999999886 999999999999988666544332 344
Q ss_pred cCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeee
Q 006047 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDR 516 (663)
Q Consensus 437 ~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR 516 (663)
.+++|.|+++++++++| +++...+ .| .|||+|+|+.++.||+++++.+++.|.+|||+|||+|++++||+|+++||
T Consensus 336 ~~~~G~~~~~~~~~i~d-~~~~~~~--~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR 411 (517)
T 3r44_A 336 AGSAGRATMFTDVAVRG-DDGVIRE--HG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDR 411 (517)
T ss_dssp TTCCBEECTTEEEEEEC-TTSCEES--SE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEECTTSCEEEEEC
T ss_pred CCCCCcCCCCeEEEEEC-CCCCCCC--CC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEcCCeeEEEecC
Confidence 58899999999999999 6665443 44 79999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHH
Q 006047 517 KKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKE 593 (663)
Q Consensus 517 ~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (663)
.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++++|+..... .+
T Consensus 412 ~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v~~~~~~------------------~~----- 467 (517)
T 3r44_A 412 LKDMIIS-GGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIVVADQNE------------------VS----- 467 (517)
T ss_dssp GGGCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTT------------------CC-----
T ss_pred CcCEEEE-CCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEEECCCCC------------------CC-----
Confidence 9999997 8999999999999999999999999997654 4677777433311 01
Q ss_pred HHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 594 FILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 594 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|+++|.+.
T Consensus 468 --~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~ 514 (517)
T 3r44_A 468 --EQQIVEYCG-TRLARYKLPKKVIFAEAI------PRNPTGKILKTVLREQYSAT 514 (517)
T ss_dssp --HHHHHHHHH-HHSCGGGSCSEEEECSCC------CBCTTCCBCHHHHHHHHGGG
T ss_pred --HHHHHHHHH-HhCCCCCCCCEEEEECCC------CCCCCcCccHHHHHHHHHhh
Confidence 134555555 679999999999999665 89999999999999998764
No 7
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=6.6e-73 Score=628.65 Aligned_cols=501 Identities=22% Similarity=0.286 Sum_probs=385.1
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
.++.++|.++++.+||++|+++. +. ...+++||+||.++++++|++|++.|+++||+|+++++|++++++++|||
T Consensus 18 ~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA~ 92 (541)
T 1v25_A 18 LNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFAV 92 (541)
T ss_dssp CCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHHH
Confidence 58999999999999999999864 21 22378999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++.++|+.++++++|++.+....+...... .+.++.++.++..... ...++.
T Consensus 93 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------~~~~~~ 161 (541)
T 1v25_A 93 PGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGE-LKTVQHFVVMDEKAPE----------GYLAYE 161 (541)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGG-CSSCCEEEESSSCCCT----------TCEEHH
T ss_pred HhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhh-CCCccEEEEecCCCCc----------ccccHH
Confidence 99999999999999999999999999999999998776654443322 2345566665543210 123455
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhh--hhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV--KCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~--~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
+++..... .....++++++++|||||||.||||++||+++++..... ...+ +++++|++++.+|++|.+
T Consensus 162 ~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~h~~ 232 (541)
T 1v25_A 162 EALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAASLVDGT-----ALSEKDVVLPVVPMFHVN 232 (541)
T ss_dssp HHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTTSTTTT-----CCCTTCEEEECSCTTSHH
T ss_pred HHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhhhcccc-----cCCCCCEEEEeccchhhh
Confidence 55433211 134567899999999999999999999999998776552 2233 678999999999999999
Q ss_pred HHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhh
Q 006047 282 DRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLK 359 (663)
Q Consensus 282 g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (663)
++...+.+++.|+++++.+. ++..+++.++++++|+++++|+++..+++......
T Consensus 233 ~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------------------- 289 (541)
T 1v25_A 233 AWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG----------------------- 289 (541)
T ss_dssp HHTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC-----------------------
Confidence 98777788999999999864 89999999999999999999999999876543211
Q ss_pred cCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC------
Q 006047 360 KGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE------ 433 (663)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~------ 433 (663)
..++++|.+++||+++++++.+.+ +.+++++++.||+||++.+++......
T Consensus 290 ----------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~ 346 (541)
T 1v25_A 290 ----------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLS 346 (541)
T ss_dssp ----------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSC
T ss_pred ----------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccC
Confidence 112589999999999999999999 567999999999999988766554321
Q ss_pred ----ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc-CCceecCcEEEEcCC
Q 006047 434 ----MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DGWFHTGDIGEWQPD 508 (663)
Q Consensus 434 ----~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-~g~~~TGDlg~~~~~ 508 (663)
.....++|+|+++++++|+| +++..++.+.++.|||+|+||+++.||+++++.+++.|. +|||+|||+|++|+|
T Consensus 347 ~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d~d 425 (541)
T 1v25_A 347 EEEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425 (541)
T ss_dssp HHHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEECTT
T ss_pred ccccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEcCC
Confidence 01247899999999999999 777766654457999999999999999999999999994 999999999999999
Q ss_pred CcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhh
Q 006047 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSL 585 (663)
Q Consensus 509 G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~ 585 (663)
|+|+++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.....
T Consensus 426 G~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~---------------- 488 (541)
T 1v25_A 426 GYVEIKDRLKDLIKS-GGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKP---------------- 488 (541)
T ss_dssp CCEEEEEESSCEEEE-TTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC-----------------------
T ss_pred ceEEEeecccceeee-CCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEECCCCC----------------
Confidence 999999999999996 8999999999999999999999999997654 58889988762110
Q ss_pred hcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 586 CENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 586 ~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
-.+++++++++..|+.|++|+.|++++.. |+|++||++|++|+++|.+
T Consensus 489 ---------~~~~l~~~~~~~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~ 536 (541)
T 1v25_A 489 ---------TPEELNEHLLKAGFAKWQLPDAYVFAEEI------PRTSAGKFLKRALREQYKN 536 (541)
T ss_dssp ---------------------CCCTTTSCSBC--------------------CCTTHHHHSTT
T ss_pred ---------CHHHHHHHHHhccCccccCCcEEEEeCCC------CCCCccCeeHHHHHHHHHH
Confidence 01334445552389999999999988665 8999999999999998754
No 8
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=5.9e-73 Score=630.59 Aligned_cols=520 Identities=20% Similarity=0.266 Sum_probs=334.4
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhh
Q 006047 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (663)
Q Consensus 37 ~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~ 116 (663)
|..+....|+.++|.++++++|+++|++... ++..+ +++||+||.++++++|++|++.|+++||+|+|+++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4444556899999999999999999986321 22111 6799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcC
Q 006047 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (663)
Q Consensus 117 ~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 196 (663)
++++|||+++|++++|+++.++.+++.++++.++++++|++++....+....... +.+..++.++.....
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------- 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PIIQKIIIMDSKTDY--------- 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TTCCEEEETTCSSCB---------
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhC-CCcceEEEEcCCccc---------
Confidence 9999999999999999999999999999999999999999998776655443222 455677766543211
Q ss_pred cEEEeHHHHHhccccc-----CC-CCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcE
Q 006047 197 LAVYSWDEFLQLGENK-----QF-DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~ 270 (663)
....++.+++...... .. +.....++++++++|||||||.||||+++|++++..+......+ ...++.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 1234556665443221 11 11223457899999999999999999999999998877655431 1125778999
Q ss_pred EEEcCChhhHHHHHHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHH
Q 006047 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (663)
Q Consensus 271 ~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (663)
+++.+|++|.+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++...
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------- 300 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTL---------------- 300 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCG----------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCcc----------------
Confidence 9999999999999888888999999999876 99999999999999999999999998865211
Q ss_pred HHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCc-eeecccccccccceec
Q 006047 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH-VLQGYGLTETCAGTFV 428 (663)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~-v~~~yG~tE~~~~~~~ 428 (663)
.. ...++++|.+++||+++++++.+.+++.++.. +++.||+||++..++.
T Consensus 301 ---------------------~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 301 ---------------------ID--------KYDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp ---------------------GG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred ---------------------cc--------ccCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 11 11226899999999999999999999988875 8999999999987776
Q ss_pred cCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcC
Q 006047 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQP 507 (663)
Q Consensus 429 ~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~ 507 (663)
...... ..+++|+|+++++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++|+
T Consensus 352 ~~~~~~-~~~~vG~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~~ 428 (550)
T 3rix_A 352 TPEGDD-KPGAVGKVVPFFEAKVVDLDTG--KTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDE 428 (550)
T ss_dssp CCTTCC-CTTEEEEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEECT
T ss_pred CCCCCC-CCCCcccccCCcEEEEEeCCCC--cCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEeC
Confidence 655443 4489999999999999993334 456678999999999999999999999999999 899999999999999
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKS 584 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 584 (663)
||+++++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 429 dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--------------- 492 (550)
T 3rix_A 429 DEHFFIVDRLKSLIKY-KGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKT--------------- 492 (550)
T ss_dssp TCCEEEC-------------------------------------------------------------------------
T ss_pred CceEEEEecchheeEE-CCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCC---------------
Confidence 9999999999999997 8999999999999999999999999997654 57888988776431
Q ss_pred hhcChHHHHHHHHHHHHHHHHcCCCCcccee-EEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHH
Q 006047 585 LCENPKAKEFILGELSRVAKEKKLKGFEFIK-AVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLL 652 (663)
Q Consensus 585 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ 652 (663)
.-.++|.++++ .++++++.|. .|++++.. |+|++||++|++|++++.+....
T Consensus 493 ---------~~~~~l~~~~~-~~l~~~~~~~~~i~~v~~l------P~t~~GKi~r~~L~~~~~~~~~~ 545 (550)
T 3rix_A 493 ---------MTEKEIVDYVA-SQVTTAKKLRGGVVFVDEV------PKGLTGKLDARKIREILIKAKKG 545 (550)
T ss_dssp ---------------------------------------------------------------------
T ss_pred ---------CCHHHHHHHHH-HhcccccccCCceEEEeec------CCCCCcceeHHHHHHHHHhhccc
Confidence 01133444444 6777776665 57777665 89999999999999999776543
No 9
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=3.4e-72 Score=623.55 Aligned_cols=524 Identities=22% Similarity=0.260 Sum_probs=419.9
Q ss_pred CceeecccccCCCCCCCCCCCCHHH-HHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCC
Q 006047 24 GPVYRSLFAKDGFPAPIPGMESCWD-VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEE 102 (663)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~l~~-~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~ 102 (663)
+.+|++..... ..+...++.+ +|.++++++ |++|+++. ++. +++||+||.++++++|.+|++.|+++
T Consensus 9 ~~~~~~~~~~~----~~p~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~~ 76 (548)
T 2d1s_A 9 NIVVGPKPFYP----IEEGSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGLVV 76 (548)
T ss_dssp TSEECCCCSSC----CCSSCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTCCT
T ss_pred ceEecCCCCCC----CCCCcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCCCC
Confidence 35666654221 1233468999 899999999 99999863 221 67999999999999999999999999
Q ss_pred CCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEec
Q 006047 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFS 182 (663)
Q Consensus 103 gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~ 182 (663)
||+|+|+++|++++++++|||+++|++++|+++.++.+++.++|+.++++++|+++.....+....... +....++.++
T Consensus 77 gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~ 155 (548)
T 2d1s_A 77 DGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTV-TTIKTIVILD 155 (548)
T ss_dssp TCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHS-TTCCEEEETT
T ss_pred CCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCC-CCCCEEEEeC
Confidence 999999999999999999999999999999999999999999999999999999998766554432111 2234555554
Q ss_pred CCChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCC------CCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhh
Q 006047 183 KVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVK------KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256 (663)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~ 256 (663)
..... ....+++++.........+.... .++++++++|||||||.||||.+||+++.+.+.....
T Consensus 156 ~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~ 226 (548)
T 2d1s_A 156 SKVDY---------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHARD 226 (548)
T ss_dssp CSSCB---------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHHTC
T ss_pred Ccccc---------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHhhc
Confidence 32100 01224566654332110111111 2389999999999999999999999999998877655
Q ss_pred hhhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHH
Q 006047 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334 (663)
Q Consensus 257 ~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~ 334 (663)
.+. ..+++++|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++..+.+...
T Consensus 227 ~~~--~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~- 302 (548)
T 2d1s_A 227 PIY--GNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSEL- 302 (548)
T ss_dssp TTT--SCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSC-
T ss_pred hhh--ccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcc-
Confidence 410 126788999999999999999876 45566 9999998875 99999999999999999999999998864110
Q ss_pred HHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCce
Q 006047 335 KISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHV 413 (663)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v 413 (663)
.. ...++++|.+++||+++++++.+.+++.+ ++.+
T Consensus 303 ------------------------------------~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i 338 (548)
T 2d1s_A 303 ------------------------------------LN--------KYDLSNLVEIASGGAPLSKEVGEAVARRFNLPGV 338 (548)
T ss_dssp ------------------------------------GG--------GSCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCC
T ss_pred ------------------------------------cc--------cccccceeEEEEcCccCCHHHHHHHHHHcCCCce
Confidence 00 01125899999999999999999999888 6889
Q ss_pred eecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-
Q 006047 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM- 492 (663)
Q Consensus 414 ~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~- 492 (663)
++.||+||++..++..... ....+++|+|+|+++++|+|.+++ .+++.|+.|||+++|++++.||+++++.+.+.|
T Consensus 339 ~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~ 415 (548)
T 2d1s_A 339 RQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTK--KSLGPNRRGEVCVKGPMLMKGYVNNPEATKELID 415 (548)
T ss_dssp EEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBC
T ss_pred eeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcC--ccCCCCCCeEEEECCHHHhhhhcCChHHhhhccc
Confidence 9999999998877664433 234589999999999999984344 455678999999999999999999999999999
Q ss_pred cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHH
Q 006047 493 VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDAL 569 (663)
Q Consensus 493 ~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~ 569 (663)
.+|||+|||+|++|+||+++++||.+|+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++.
T Consensus 416 ~~g~~~TGDl~~~~~dG~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~- 493 (548)
T 2d1s_A 416 EEGWLHTGDIGYYDEEKHFFIVDRLKSLIKY-KGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGK- 493 (548)
T ss_dssp TTSCEEEEEEEEECTTCCEEEEEEGGGCBCB-TTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-
T ss_pred CCcEEEccCEEEEcCCCeEEEeccccceEEE-CCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCC-
Confidence 7999999999999999999999999999997 8999999999999999999999999997654 5889999987632
Q ss_pred HHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCcccee-EEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 570 ERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIK-AVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 570 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
. .+ .++|+++++ .+|+.|+.|+ .|++++.. |+|++||++|++|+++|.+
T Consensus 494 ---------~-------~~-------~~~l~~~~~-~~l~~~~~p~~~i~~v~~l------P~t~~GKi~r~~L~~~~~~ 543 (548)
T 2d1s_A 494 ---------N-------MT-------EKEVMDYVA-SQVSNAKRLRGGVRFVDEV------PKGLTGKIDGRAIREILKK 543 (548)
T ss_dssp ---------C-------CC-------HHHHHHHHH-TTSCGGGSCTTCEEECSSC------CBCTTSCBCHHHHHHHHHS
T ss_pred ---------C-------CC-------HHHHHHHHH-HhccccccccccEEEccCC------CCCCcchhHHHHHHHHHhh
Confidence 0 00 234555665 7899999999 89998665 8999999999999999987
Q ss_pred HHHH
Q 006047 649 TFLL 652 (663)
Q Consensus 649 ~~~~ 652 (663)
.+++
T Consensus 544 ~i~~ 547 (548)
T 2d1s_A 544 PVAK 547 (548)
T ss_dssp CC--
T ss_pred hhhc
Confidence 6654
No 10
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=1.6e-72 Score=626.05 Aligned_cols=500 Identities=15% Similarity=0.188 Sum_probs=335.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG---E------RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC---C------CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh----hHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcE
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~ 198 (663)
|+++|++++|+++.++.+++.++++.++++++|++..... ...............++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999986531 111111111234455665554311
Q ss_pred EEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
...+.++...............++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++++|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123444444433322233456789999999999999999999999999999999988877 889999999999999
Q ss_pred hHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
|.+++.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+++.....
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 302 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQY-------------------- 302 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTT--------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhc--------------------
Confidence 9999875 6778999999999876 9999999999999999999999999987643211
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
..++ +++|.+++||+++++++.+.+++.+++++++.||+||++..+.........
T Consensus 303 -----------------~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 303 -----------------KDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp -----------------HHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred -----------------cccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 0111 589999999999999999999998999999999999988655444333333
Q ss_pred ccCccCccc-cCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEE
Q 006047 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKI 513 (663)
Q Consensus 436 ~~~~~G~p~-~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~ 513 (663)
...++|.|+ ++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++++||+|++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~~dG~l~~ 434 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYR--EVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRV 434 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEECTTSCEEE
T ss_pred ccCCCceecCCCcEEEEEC-CCCC--CCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEcCCCCEEE
Confidence 347899996 899999999 6665 45677999999999999999999999999999 799999999999999999999
Q ss_pred eeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChH
Q 006047 514 IDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPK 590 (663)
Q Consensus 514 ~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (663)
+||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+...
T Consensus 435 ~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~--------------------- 492 (544)
T 3o83_A 435 VGRIKDQINR-GGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPEL--------------------- 492 (544)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred EeecCCEEEe-CCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCCCCC---------------------
Confidence 9999999996 8999999999999999999999999997654 57888888765320
Q ss_pred HHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 591 AKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 591 ~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
..+.+++++++..|+.|++|+.|++++.. |+|++||++|++|++++.+
T Consensus 493 ----~~~~l~~~~~~~~l~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~~~ 540 (544)
T 3o83_A 493 ----KAVVLRRHLMELGIAQYKLPDQIKLIESL------PLTAVGKVDKKQLRSILNT 540 (544)
T ss_dssp ----------------------------------------------------------
T ss_pred ----CHHHHHHHHHhCCCCcccCCcEEEEeccC------CCCCCCCCcHHHHHHHHhh
Confidence 11334445553379999999999998665 8999999999999998865
No 11
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=2.7e-71 Score=618.56 Aligned_cols=510 Identities=17% Similarity=0.179 Sum_probs=419.4
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCch
Q 006047 41 PGMESCWDVFRMAVER-----NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCP 114 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~-----~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~ 114 (663)
..++++.++|.++++. +||++|+++. ++. +..+++||+||.++++++|++|.+. |+++||+|+|+++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456678999999999 9999999976 422 2347899999999999999999999 9999999999999999
Q ss_pred hhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhh
Q 006047 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (663)
Q Consensus 115 ~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~ 194 (663)
++++++|||+++|++++|+++.++.+++.++|+.++++++|++++....+...... .+.++.++.++.....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~------- 182 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASE-CPSLRIKLLVSEKSCD------- 182 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGG-CTTCCEEEEESSSCCT-------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhc-CCceeEEEEecccCcc-------
Confidence 99999999999999999999999999999999999999999998877665443322 2445566666542110
Q ss_pred cCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHH--HHhhhhhhhhhccccCCCCcEEE
Q 006047 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT--FIAGVKCLLESVNEKLTSEDVYV 272 (663)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~--~~~~~~~~~~~~~~~~~~~d~~~ 272 (663)
...++++++..... ........++++++++|||||||.||||.++|+ ++. ..... ..+ ++.++|+++
T Consensus 183 ---~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~-~~~-----~~~~~d~~~ 251 (570)
T 3c5e_A 183 ---GWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA-GWT-----GLQASDIMW 251 (570)
T ss_dssp ---TSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT-TTT-----SCCTTCEEE
T ss_pred ---ccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh-hhc-----CCCCCceEE
Confidence 12356666654322 122334578999999999999999999999999 554 33332 333 688999999
Q ss_pred EcCChhhHHHHHH-HHHHHHcCcEEEEEc---CCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHH
Q 006047 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (663)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~~v~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (663)
+.+|++|..++.. ++.++..|+++++.+ .++..+++.|+++++|+++++|+++..+.+. ..
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~---~~------------ 316 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQ---DL------------ 316 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTS---CT------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhc---cc------------
Confidence 9999999999875 778899999999886 3899999999999999999999999987641 00
Q ss_pred HHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceec
Q 006047 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (663)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 428 (663)
....++++|.+++||+++++++.+.+++.+++++++.||+||++..+..
T Consensus 317 -------------------------------~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 317 -------------------------------SSYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp -------------------------------TTCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred -------------------------------cccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 0011258999999999999999999998889999999999999876655
Q ss_pred cCCCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEc-----cCcccccccCChhhhhccccCCceecCcEE
Q 006047 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-----GSTVFSGYYKREDLTKEVMVDGWFHTGDIG 503 (663)
Q Consensus 429 ~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~-----g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg 503 (663)
.... ....+++|+|+++++++|+| +++. +++.|+.|||+|+ |++++.||+++++.+.+.|.+|||+|||+|
T Consensus 366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~--~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg 441 (570)
T 3c5e_A 366 SKTM-KIKPGYMGTAASCYDVQIID-DKGN--VLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441 (570)
T ss_dssp CTTS-CCCTTCCCEECTTCCEEEEC-TTSC--BCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred Cccc-ccCCCcccccCCCceEEEEC-CCCC--CCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence 4332 23458999999999999999 6665 4567899999999 999999999999999999999999999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCC
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNG 580 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 580 (663)
++|+||+|++.||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++..
T Consensus 442 ~~d~dG~l~~~GR~dd~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~----------- 509 (570)
T 3c5e_A 442 IKDEDGYFQFMGRADDIINS-SGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFL----------- 509 (570)
T ss_dssp EECTTSCEEEEEEGGGCEEE-TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGT-----------
T ss_pred EEcCCceEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCccc-----------
Confidence 99999999999999999996 8999999999999999999999999997654 57899999876420
Q ss_pred ChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 581 DFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
....+.+.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++.+.+..
T Consensus 510 --------~~~~~~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~~s 564 (570)
T 3c5e_A 510 --------SHDPEQLTKELQQHVK-SVTAPYKYPRKIEFVLNL------PKTVTGKIQRAKLRDKEWKMS 564 (570)
T ss_dssp --------TSCHHHHHHHHHHHHH-HHSCGGGSCSEEEEESCC------CBCTTCCBCHHHHHHHHTC--
T ss_pred --------CcchHHHHHHHHHHHH-hhCccccCCcEEEEeccC------CCCCCcCCcHHHHHHHHHhhh
Confidence 0011234556667776 689999999999999765 899999999999999875543
No 12
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=1.3e-71 Score=630.64 Aligned_cols=521 Identities=15% Similarity=0.215 Sum_probs=420.6
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
.+++.++|+++++++||++|+++. +...+..+++||+||.++++++|++|+++|+++||+|+|+++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 356889999999999999999986 33334458899999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh---------hHhhcCCCcC-CCCcEEEEecCCChhhHHHH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTT-EHLKTIVSFSKVKPEQREEI 192 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~~~~~~~-~~~~~ii~~~~~~~~~~~~~ 192 (663)
|+++|++++|+++.++.+++.++|++++++++|+++.... .+.+...... ..+..+++++.......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence 9999999999999999999999999999999999876421 1222221110 23566777653211000
Q ss_pred hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHh-hhhhhhhhccccCCCCcEE
Q 006047 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIA-GVKCLLESVNEKLTSEDVY 271 (663)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~-~~~~~~~~~~~~~~~~d~~ 271 (663)
........|++++..... ........++++++++|||||||.||||+++|++++..+. .....+ +++++|++
T Consensus 229 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 301 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYVF-----DYHPGDIY 301 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHHT-----TCCTTCEE
T ss_pred -ccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHhc-----CCCCCCEE
Confidence 000113567777654322 1233445679999999999999999999999999887664 334445 78899999
Q ss_pred EEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHH
Q 006047 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (663)
Q Consensus 272 ~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (663)
++..|++|..++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------- 371 (652)
T 1pg4_A 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---------- 371 (652)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG----------
T ss_pred EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc----------
Confidence 99999999999854 7889999999999863 7899999999999999999999999886421110
Q ss_pred HHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC---Cceeeccccccc
Q 006047 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTET 422 (663)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~yG~tE~ 422 (663)
.+...+++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 372 ---------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 418 (652)
T 1pg4_A 372 ---------------------------------IEGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418 (652)
T ss_dssp ---------------------------------TTTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred ---------------------------------cccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence 00112368999999999999999999998888 899999999999
Q ss_pred ccceeccCCC-CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEcc--CcccccccCChhhhhccc---cCCc
Q 006047 423 CAGTFVSLPN-EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGW 496 (663)
Q Consensus 423 ~~~~~~~~~~-~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~g~ 496 (663)
++.++..... .....+++|+|+++++++|+| +++.. ++.|+.|||+|+| |.++.||+++++.+.+.| .+||
T Consensus 419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~--v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~ 495 (652)
T 1pg4_A 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHP--QEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 495 (652)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCB--CCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred ccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCC--cCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence 8766655432 233458999999999999999 66654 4567899999999 789999999999887765 3899
Q ss_pred eecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHH
Q 006047 497 FHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWA 573 (663)
Q Consensus 497 ~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~ 573 (663)
|+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++.
T Consensus 496 y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~----- 569 (652)
T 1pg4_A 496 YFSGDGARRDEDGYYWITGRVDDVLNV-SGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGE----- 569 (652)
T ss_dssp EEEEEEEEECTTSCEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTC-----
T ss_pred EECCcEEEEcCCCcEEEEecCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCC-----
Confidence 999999999999999999999999997 7999999999999999999999999997654 5899999988642
Q ss_pred HHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 574 AENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
. ..++ +.++|+++++ ..|++|++|+.|++++.. |+|++||++|++|++++...++
T Consensus 570 -----~-------~~~~----~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~ 624 (652)
T 1pg4_A 570 -----E-------PSPE----LYAEVRNWVR-KEIGPLATPDVLHWTDSL------PKTRSGKIMRRILRKIAAGDTS 624 (652)
T ss_dssp -----C-------CCHH----HHHHHHHHHH-HHTCGGGCCSEEEECSCC------CBCTTSCBCHHHHHHHHHTC--
T ss_pred -----C-------CCHH----HHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCCccchHHHHHHHHhCCCC
Confidence 0 1122 3445556666 679999999999999765 8999999999999999987543
No 13
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=8.7e-72 Score=614.08 Aligned_cols=491 Identities=22% Similarity=0.289 Sum_probs=402.4
Q ss_pred HHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcC
Q 006047 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127 (663)
Q Consensus 48 ~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 127 (663)
++|.++++++|+++|+.... ++. +++||+||.++++++|++|.++|+++||+|+++++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~~--~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIET--AAG----DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEEE--TTC----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEec--CCC----cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 57899999999999998651 121 679999999999999999999999999999999999999999999999999
Q ss_pred CeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHHHHHh
Q 006047 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQ 207 (663)
Q Consensus 128 ~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (663)
++++|+++.++.+++.++++.++++++|++......+....... . ..++.+..... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999976544332222111 0 13333332211 01111111
Q ss_pred cccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHH-H
Q 006047 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-E 286 (663)
Q Consensus 208 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~ 286 (663)
.. ..........++++++++|||||||.||||+++|+++.+.+......+ +++++|++++.+|++|.+|+.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 112233456789999999999999999999999999999999888777 7899999999999999999765 6
Q ss_pred HHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCC
Q 006047 287 EVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (663)
Q Consensus 287 ~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (663)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..++....
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 778999999988876 9999999998 89999999999998764210
Q ss_pred CcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCcccc
Q 006047 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445 (663)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~ 445 (663)
.. ....+++|.+++||+++++++.+.+.+.++.++++.||+||++..+.... ......+++|+|++
T Consensus 262 -----~~--------~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LT--------KETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CS--------TTTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----cc--------ccchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 00 01125899999999999999999999989999999999999987654333 23334588999999
Q ss_pred CeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeeeccceeecC
Q 006047 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLS 524 (663)
Q Consensus 446 ~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~ 524 (663)
+++++|+|.+++ .+++.|+.|||+|+|++++.||+++++.+.+.| .+|||+|||+|++++||+|+++||.||+|++
T Consensus 328 ~~~~~i~d~~~g--~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~- 404 (503)
T 4fuq_A 328 GVSARVTDPETG--KELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVIT- 404 (503)
T ss_dssp TCEEEEECTTTC--CBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEECTTCEEEECCSSTTCEEE-
T ss_pred CeEEEEEECCCC--CCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEcCCCcEEEEecCCCEEEE-
Confidence 999999994444 456678999999999999999999999999999 5999999999999999999999999999997
Q ss_pred CCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHH
Q 006047 525 QGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSR 601 (663)
Q Consensus 525 ~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 601 (663)
+|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++. ... .+++++
T Consensus 405 ~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~------------------~~~------~~~l~~ 460 (503)
T 4fuq_A 405 GGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGA------------------TID------EAQVLH 460 (503)
T ss_dssp TTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTC------------------CCC------HHHHHH
T ss_pred CCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCC------------------CCC------HHHHHH
Confidence 8999999999999999999999999987654 5789999987642 000 134555
Q ss_pred HHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 602 VAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 602 ~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
+++ ..|+.|++|+.|++++.. |+|++||++|++|+++|++
T Consensus 461 ~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~~~~ 500 (503)
T 4fuq_A 461 GLD-GQLAKFKMPKKVIFVDDL------PRNTMGKVQKNVLRETYKD 500 (503)
T ss_dssp HHB-TTBCGGGCCSEEEEESCC------CBCTTSCBCHHHHHHHTTT
T ss_pred HHH-hhcccCCCCCEEEEECCC------CCCcccceeHHHHHHHHHH
Confidence 555 789999999999999765 8999999999999998865
No 14
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=5.1e-71 Score=625.92 Aligned_cols=530 Identities=18% Similarity=0.184 Sum_probs=417.3
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHH-hCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~-~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
.+++.++|.++++++||++|+++. +...+..+++||+||.++++++|++|+ ++|+++||+|+|+++|++++++++|
T Consensus 81 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~l 157 (663)
T 1ry2_A 81 LNACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLL 157 (663)
T ss_dssp ECHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHH
T ss_pred ccHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 367899999999999999999986 333344588999999999999999999 9999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh---------hHhhcCCCcCCCCcEEEEecCCChhhHHHH
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~---------~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~ 192 (663)
||+++|++++|+++.++.+++.++|++++++++|+++.... .+.+.... .+.++.+++++.......
T Consensus 158 A~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~vi~~~~~~~~~~--- 233 (663)
T 1ry2_A 158 AISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRE-TPGVRHVLVYRKTNNPSV--- 233 (663)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTS-CTTCCEEEEECSSCCSSC---
T ss_pred HHHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHh-CCCCceEEEEecCCCCcc---
Confidence 99999999999999999999999999999999999876532 22222222 245667777654211000
Q ss_pred hhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhh-hhhhhhhccccCCCCcEE
Q 006047 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVY 271 (663)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~d~~ 271 (663)
.........|.+++..... ..+.....++++++++|||||||.||||+++|.+++..+.. ....+ ++.++|++
T Consensus 234 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~~-----~~~~~d~~ 307 (663)
T 1ry2_A 234 AFHAPRDLDWATEKKKYKT-YYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTMRYTF-----DTHQEDVF 307 (663)
T ss_dssp CCCSSSEEEHHHHHTTSCS-CCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHHHHHS-----CCCSSCEE
T ss_pred ccCCCccccHHHHHhhcCC-CCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHHHHhc-----CCCCCcEE
Confidence 0001123567777654321 23334557899999999999999999999999998876643 33344 78899999
Q ss_pred EEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHH
Q 006047 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (663)
Q Consensus 272 ~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (663)
++..|++|..+... ++.+++.|+++++.+. ++..+++.|+++++|+++++|+.++.+.+.....
T Consensus 308 ~~~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~---------- 377 (663)
T 1ry2_A 308 FTAGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY---------- 377 (663)
T ss_dssp EECSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS----------
T ss_pred EEcCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc----------
Confidence 99999999999854 7889999999999864 7899999999999999999999998875311000
Q ss_pred HHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC---Cceeeccccccc
Q 006047 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTET 422 (663)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~---~~v~~~yG~tE~ 422 (663)
.+...+++||.+++||+++++++.+++.+.+| +++++.||+||+
T Consensus 378 ---------------------------------~~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 424 (663)
T 1ry2_A 378 ---------------------------------IENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTES 424 (663)
T ss_dssp ---------------------------------SSSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTT
T ss_pred ---------------------------------cccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccc
Confidence 00112268999999999999999999999887 899999999999
Q ss_pred ccceeccCC--CCccccCccCccccCeEEEEeecC-CCccccCCCCCCCeEEEcc--CcccccccCChhhhhccc---cC
Q 006047 423 CAGTFVSLP--NEMSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VD 494 (663)
Q Consensus 423 ~~~~~~~~~--~~~~~~~~~G~p~~~~~v~iv~~~-~~~~~~~~~g~~Gel~v~g--~~~~~gy~~~~~~~~~~~---~~ 494 (663)
+..++.... ......+++|.|+++++++|+| + ++..++. .|+.|||+++| |+++.|||++++.+.+.| .+
T Consensus 425 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~ 502 (663)
T 1ry2_A 425 GSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP 502 (663)
T ss_dssp CSCSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred cCeeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence 876665543 2233458999999999999999 5 5554432 27899999999 589999999999888776 37
Q ss_pred CceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHH
Q 006047 495 GWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALER 571 (663)
Q Consensus 495 g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~ 571 (663)
|||+|||+|++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|+++++....
T Consensus 503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~-~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~ 581 (663)
T 1ry2_A 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNV-SGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS 581 (663)
T ss_dssp TSEEEEEEEEECTTCCEEECSCTTSCBCS-SSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC------
T ss_pred CEEEcCCEEEEcCCCCEEEEeecCCEEEE-CCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCccc
Confidence 99999999999999999999999999997 7999999999999999999999999997754 6899999988753100
Q ss_pred HHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHH
Q 006047 572 WAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFL 651 (663)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~ 651 (663)
.. . .+..+.+.++|+++++ +.|++|++|+.|++++.. |+|++||++|+.|++++...++
T Consensus 582 ---------~~----~-~~~~~~l~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~T~sGKi~R~~L~~~~~~~~~ 640 (663)
T 1ry2_A 582 ---------TA----T-DDELQDIKKHLVFTVR-KDIGPFAAPKLIILVDDL------PKTRSGKIMRRILRKILAGESD 640 (663)
T ss_dssp --------------------CCSHHHHHHHHHH-HHTCTTTSCSEEEECSCC------CBCTTSCBCHHHHHHSCC----
T ss_pred ---------cc----c-chhHHHHHHHHHHHHH-HhCCCCcCCeEEEEcCCC------CCCCccCchHHHHHHHHcCCCC
Confidence 00 0 0000123455666666 679999999999999765 8999999999999999876543
Q ss_pred H
Q 006047 652 L 652 (663)
Q Consensus 652 ~ 652 (663)
.
T Consensus 641 ~ 641 (663)
T 1ry2_A 641 Q 641 (663)
T ss_dssp -
T ss_pred C
Confidence 3
No 15
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=1.4e-70 Score=606.29 Aligned_cols=487 Identities=18% Similarity=0.232 Sum_probs=408.6
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhC-CCCCCCEEEEEcCCchhhHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~-gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
+|+.++|+++++++|+++|+++. + +++||+||.++++++|++|.+. |+++|++|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ---G------QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC---C------ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47999999999999999999864 2 6799999999999999999985 889999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++.++++.++++++|+++...... .. . .....++
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~----------------------~~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---Q----------------------QIQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---C----------------------SSCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---c----------------------ccceecH
Confidence 999999999999999999999999999999999976532111 00 0 1123455
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
.++...............++++++++|||||||.||+|++||+++.+.+......+ ++..++++++.+|++|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 66655443322333345779999999999999999999999999999998887777 7889999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
+..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 253 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPG------------------------- 253 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTT-------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccc-------------------------
Confidence 8888889999999998864 78999999999999999999999988754110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC----
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---- 433 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---- 433 (663)
.. ...++++|.+++||+++++++.+.+++.+ ++++++.||+||++..++......
T Consensus 254 ------------~~--------~~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 254 ------------FS--------QDLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp ------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred ------------cc--------cccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 00 01125899999999999999999999988 899999999999987665443221
Q ss_pred ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc--cCC--ceecCcEEEEcCCC
Q 006047 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTGDIGEWQPDG 509 (663)
Q Consensus 434 ~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~--~~g--~~~TGDlg~~~~~G 509 (663)
.....++|.|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.| .+| ||+|||+|++ +||
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~-~dG 389 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQ--PLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI-QDG 389 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE-ETT
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCC--CCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc-cCC
Confidence 12236799999999999999 6664 55678999999999999999999999999988 344 7999999999 599
Q ss_pred cEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhh
Q 006047 510 SLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLC 586 (663)
Q Consensus 510 ~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 586 (663)
+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 390 ~l~~~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------ 450 (511)
T 3e7w_A 390 QIFCQGRLDFQIKL-HGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHE------------------ 450 (511)
T ss_dssp EEEEEEESSSEEEE-TTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCC------------------
T ss_pred eEEEEccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEecccc------------------
Confidence 99999999999997 8999999999999999999999999987644 5899999987642
Q ss_pred cChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 587 ENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 587 ~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
......+.+.|+++++ +.|+.|++|+.+++++.. |+|++|||+|++|++.+.+.
T Consensus 451 --~~~~~~~~~~l~~~l~-~~L~~~~~P~~~~~v~~l------P~t~~GKi~R~~L~~~~~~~ 504 (511)
T 3e7w_A 451 --FEKEFQLTSAIKKELA-ASLPAYMIPRKFIYQDHI------QMTANGKIDRKRIGEEVLVR 504 (511)
T ss_dssp --CSSHHHHHHHHHHHHH-HHSCGGGSCSEEEECSCC------CBCTTSCBCHHHHHHHHHHH
T ss_pred --ccchhhHHHHHHHHHH-hhCchhhCCeeEEEeccC------CCCCCcCccHHHHHhHHhhh
Confidence 0011234456666666 689999999999998665 89999999999999998764
No 16
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.9e-71 Score=613.12 Aligned_cols=492 Identities=20% Similarity=0.249 Sum_probs=326.3
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...|+.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD---G------VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC---C------cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 3478999999999999999999864 2 679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEe
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~ 201 (663)
||+++|++++|+++.++.+++.++++.++++++|++.+....+...... ...+..++.++.... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPS-LGGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGG-CSSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhcc-cCCceEEEEcCCCCc--------------C
Confidence 9999999999999999999999999999999999999887664444422 245666666654211 1
Q ss_pred HHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHH
Q 006047 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (663)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~ 281 (663)
+.++...............++++++++|||||||.||||.++|+++++.+......+ +++++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 122222111223334566789999999999999999999999999999999888777 889999999999999999
Q ss_pred HHHHHHHHH-HcCcEEEEEcCCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhc
Q 006047 282 DRAIEEVFI-SNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (663)
Q Consensus 282 g~~~~~~~l-~~G~~~v~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (663)
++...+.++ ..|+++++...++..+++.|+++++|+++++|+++..+++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 998866654 4455555444599999999999999999999999999875320
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCCccccCc
Q 006047 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (663)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~ 439 (663)
...++++|.++.+|++ +..+.+.+.+ ++.+++.||+||++.+++....... ..+
T Consensus 268 --------------------~~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 --------------------PAQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp --------------------GGGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred --------------------ccchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 0011579999999987 7777888777 9999999999999987665543322 245
Q ss_pred cCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeec--
Q 006047 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRK-- 517 (663)
Q Consensus 440 ~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~-- 517 (663)
+|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.|.+|||+|||+|++++||++++.||.
T Consensus 323 ~G~p~~~~~~~i~d-~~~~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~dG~l~~~GR~d~ 399 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDR--PLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPE 399 (509)
T ss_dssp CCEECTTCEEEEEC-TTSC--BCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECTTSCEEEEEEC--
T ss_pred ccccCCCcEEEEEC-CCCC--CCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECCCceEEEeCCCCc
Confidence 99999999999999 6654 556789999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHH
Q 006047 518 KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEF 594 (663)
Q Consensus 518 ~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 594 (663)
+|+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++++|++.++.. .
T Consensus 400 ~d~ik~-~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~------------------------~ 454 (509)
T 3ivr_A 400 KELIKT-GGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGES------------------------I 454 (509)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEEE-CCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCC------------------------C
Confidence 999996 8999999999999999999999999997654 57888988776431 0
Q ss_pred HHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 595 ILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 595 i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
-.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++++.+.
T Consensus 455 ~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKidr~~Lr~~~~~~ 502 (509)
T 3ivr_A 455 AADALAEFVA-SLIARYKKPKHVVFVEAL------PKDAKGAIDRAAVKTAHGQE 502 (509)
T ss_dssp -------------------------------------------------------
T ss_pred CHHHHHHHHH-hhCcccCCCcEEEEecCC------CCCCCCCccHHHHHHHHhhc
Confidence 1234445555 689999999999998665 89999999999999998764
No 17
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=1.2e-70 Score=607.19 Aligned_cols=488 Identities=19% Similarity=0.218 Sum_probs=401.7
Q ss_pred CCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHH
Q 006047 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (663)
Q Consensus 44 ~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (663)
+|+.++|+++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999999999865 3 67999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeHH
Q 006047 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (663)
Q Consensus 124 ~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~ 203 (663)
+++|++++|+++.++.+++.++++.++++++|++....... . . ..++... .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~---~-----~-~~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD---L-----P-VRIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC---C-----S-SEEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc---c-----c-cceechh------------------hhh
Confidence 99999999999999999999999999999999986432110 0 0 1111100 112
Q ss_pred HHHhccc-ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 204 EFLQLGE-NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 204 ~~~~~~~-~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
++..... ....+.....++++++++|||||||.||+|++||+++.+.+......+ ++.++|++++++|++|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 2221111 112233455789999999999999999999999999999998887777 7899999999999999999
Q ss_pred HHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
+..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8888889999999999874 89999999999999999999999988753110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC----
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---- 433 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---- 433 (663)
.. ...++++|.+++||+++++++.+.+.+.+ ++.+++.||+||++..++......
T Consensus 255 ------------~~--------~~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FS--------ESMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CS--------TTTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------cc--------chhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 00 01125899999999999999999999888 899999999999987765443321
Q ss_pred ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc----CCceecCcEEEEcCCC
Q 006047 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTGDIGEWQPDG 509 (663)
Q Consensus 434 ~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~----~g~~~TGDlg~~~~~G 509 (663)
.....++|.|.++++++|+| +++. +++.|+.|||+++||+++.||+++++.+++.|. +|||+|||+|++ +||
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~-~dG 390 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGT--IAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV-ENG 390 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSC--BCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE-ETT
T ss_pred ccCCCccccccCCcEEEEEC-CCCC--CCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe-cCC
Confidence 12346899999999999999 6665 455679999999999999999999999999882 569999999999 799
Q ss_pred cEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhh
Q 006047 510 SLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLC 586 (663)
Q Consensus 510 ~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~ 586 (663)
+|++.||.||+|++ +|++|+|.+||++|.+||+|.+|+|++.+++ +.++|+|++.++.
T Consensus 391 ~l~i~GR~~d~ik~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------ 451 (512)
T 3fce_A 391 LLFYNGRLDFQIKL-HGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHS------------------ 451 (512)
T ss_dssp EEEEEEEGGGCEEE-TTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCC------------------
T ss_pred EEEEecccCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCcc------------------
Confidence 99999999999997 8999999999999999999999999987644 5789999987632
Q ss_pred cChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 587 ENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 587 ~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
.+....+.++|+++++ ..|+.|++|+.+++++.. |+|++||++|++|++.+.+.
T Consensus 452 --~~~~~~~~~~l~~~l~-~~L~~~~~P~~~~~~~~l------P~t~~GKi~R~~L~~~~~~~ 505 (512)
T 3fce_A 452 --FEKEFKLTSAIKKELN-ERLPNYMIPRKFMYQSSI------PMTPNGKVDRKKLLSEVTAL 505 (512)
T ss_dssp --CSSHHHHHHHHHHHHH-TTSCGGGSCSEEEECSCC------CBCTTSSBCHHHHHHHHHC-
T ss_pred --ccchhhhHHHHHHHHH-hhCchhcCCeEEEEeccc------CCCCCcChHHHHHHhhhhhc
Confidence 0011234456667776 799999999999998665 89999999999999998764
No 18
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=3.8e-71 Score=618.47 Aligned_cols=479 Identities=18% Similarity=0.173 Sum_probs=315.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
.+...++.++|.++++++||++|+++. + +++||+||.++++++|++|.++|+++||+|+|+++|+++++++
T Consensus 71 ~~~~~~l~~~l~~~a~~~pd~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~ 141 (570)
T 4gr5_A 71 APAGACVHELFEAQAARAPDAVALLHE---A------DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMVVA 141 (570)
T ss_dssp CCCSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCccCCHHHHHHHHHHHCCCCeEEECC---C------CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 345689999999999999999999864 2 6799999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEE
Q 006047 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
+|||+++|++++|+++.++.+++.++++.++++++|++......+ .....++..+..
T Consensus 142 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~--------------- 198 (570)
T 4gr5_A 142 LLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA--------------- 198 (570)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC-----------------
T ss_pred HHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc---------------
Confidence 999999999999999999999999999999999999997654321 111222211110
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~ 279 (663)
..............++++++++|||||||.||||+++|+++.+.+... ..+ +++++|++++++|++|
T Consensus 199 -------~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~-~~~-----~~~~~d~~l~~~p~~~ 265 (570)
T 4gr5_A 199 -------ASDAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLGQ-DYA-----GFGPDEVFLQCSPVSW 265 (570)
T ss_dssp ------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSSC-CSS-----CCSTTCEEEECSCTTS
T ss_pred -------cccccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHhh-hhc-----CCCCCCEEEEecCccH
Confidence 000011122334578999999999999999999999999998766552 222 6789999999999998
Q ss_pred HHHHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 280 IFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 280 ~~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
..+...++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+++.....
T Consensus 266 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~--------------------- 324 (570)
T 4gr5_A 266 DAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEA--------------------- 324 (570)
T ss_dssp STHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGG---------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhh---------------------
Confidence 7666667889999999999863 8999999999999999999999999886532110
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC--
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-- 433 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-- 433 (663)
++++|.+++||++++.++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 325 ---------------------------~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~ 377 (570)
T 4gr5_A 325 ---------------------------FEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVAGD 377 (570)
T ss_dssp ---------------------------GTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCGGG
T ss_pred ---------------------------CCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecccc
Confidence 15899999999999999888888776 899999999999987665443221
Q ss_pred -ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cC--------CceecCcEE
Q 006047 434 -MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD--------GWFHTGDIG 503 (663)
Q Consensus 434 -~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~--------g~~~TGDlg 503 (663)
.....++|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+++.| .+ |||+|||+|
T Consensus 378 ~~~~~~~iG~p~~~~~v~i~d-~~~~--~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGDlg 454 (570)
T 4gr5_A 378 LSGTALPIGVPLAGKRAYVLD-DDLK--PAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLA 454 (570)
T ss_dssp TTSSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEEEE
T ss_pred cCCCccccceeeCCCEEEEEC-CCCC--CCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCCeE
Confidence 12236799999999999999 6654 45668999999999999999999999999988 32 699999999
Q ss_pred EEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCC
Q 006047 504 EWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNG 580 (663)
Q Consensus 504 ~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~ 580 (663)
++|+||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++..+..
T Consensus 455 ~~d~dG~l~~~GR~~d~Ik~-~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~----------- 522 (570)
T 4gr5_A 455 RRRADGVLEYVGRADDQVKI-RGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADA----------- 522 (570)
T ss_dssp EECTTSCEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCeEEEEcccCCEEEE-CcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCC-----------
Confidence 99999999999999999997 8999999999999999999999999997644 57889988765320
Q ss_pred ChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 581 DFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 581 ~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
....++|+++++ ..|+.|++|+.|++++.. |+|++|||+|++|++.
T Consensus 523 ------------~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKi~R~~L~~~ 568 (570)
T 4gr5_A 523 ------------PPDAAELRRHVA-EALPAYMVPVECVPVDEL------PRTPNGKLDRRALTGS 568 (570)
T ss_dssp -----------------------------------------------------------------
T ss_pred ------------CcCHHHHHHHHH-hhCccccCCcEEEEcccC------CCCCCcCcchHhhhcc
Confidence 011234555555 689999999999988665 8999999999999864
No 19
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=9.5e-70 Score=602.39 Aligned_cols=501 Identities=18% Similarity=0.234 Sum_probs=398.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
..++++.++|.++++ +|+++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD---T------GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC---C------CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 345669999999999 9999999853 2 57999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCC-cEEEEecCCChhhHHHHhhcCcEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGLAV 199 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~-~~ii~~~~~~~~~~~~~~~~~~~~ 199 (663)
|||+++|++++|+++.++.+++.++|+.++++++|++......+....... ... ..++.++..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------cccc
Confidence 999999999999999999999999999999999999987665444332111 122 344444432110 0001
Q ss_pred EeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHH-HHHHhhhhhhhhhccccCCCCcEEEEcCChh
Q 006047 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (663)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l-~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~ 278 (663)
..++++...... ........++++++++|||||||.||+|.+||+++ .+........+ ++.++|++++.+|++
T Consensus 162 ~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~~~~~-----~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 162 PLFEELIDAAAP-AAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYAKPIL-----GIAENDVVFSAAKLF 235 (529)
T ss_dssp CBHHHHHHTSCC-CSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTCCCCC-----CCCTTCEEEESSCTT
T ss_pred cchhhhhccCCC-cccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHhhhcc-----CCCCCcEEEEeecHH
Confidence 245665543221 22233457899999999999999999999999999 55555544334 678999999999999
Q ss_pred hHHHHHH-HHHHHHcCcEEEEEc-C-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhH
Q 006047 279 HIFDRAI-EEVFISNGAAIGFWR-G-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (663)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~~v~~~-~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (663)
|.+++.. ++.++..|+++++.+ . ++..+++.++++++|+++++|+++..++.....
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------- 294 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--------------------- 294 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC---------------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc---------------------
Confidence 9999876 567899999999873 3 899999999999999999999999887541100
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCcc
Q 006047 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (663)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (663)
.. . ...++|.+++||+++++++.+.+++.+++++++.||+||++.++....... .
T Consensus 295 ------------~~-~-----------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~ 349 (529)
T 2v7b_A 295 ------------PA-R-----------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V 349 (529)
T ss_dssp ------------CC-G-----------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred ------------cc-c-----------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence 00 0 003799999999999999999999988999999999999977665554433 3
Q ss_pred ccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEee
Q 006047 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIID 515 (663)
Q Consensus 436 ~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~G 515 (663)
..+++|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.+.+.|.+|||+|||+|++++||+|++.|
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~~G~l~~~G 426 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGH--AVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAG 426 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSC--BCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECTTSCEEEEE
T ss_pred ccCCcccCCCCCEEEEEC-CCCC--CCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECCCccEEEeC
Confidence 348899999999999999 6665 4567899999999999999999999999999999999999999999999999999
Q ss_pred eccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC--CCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHH
Q 006047 516 RKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF--ESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKE 593 (663)
Q Consensus 516 R~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~--~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (663)
|.||+|++ +|++|+|.|||++|.+||+|.+|+|++... .+.++|+|++.++. . ..+
T Consensus 427 R~dd~ik~-~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~a~vv~~~~~----------~-------~~~---- 484 (529)
T 2v7b_A 427 RSDDMLKV-SGQYVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREF----------A-------PSE---- 484 (529)
T ss_dssp EGGGCBC-----CBCHHHHHHHHTTSTTEEEEEEEEEEETTEEEEEEEEEECTTC----------C-------CCH----
T ss_pred ccCCeEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecCCCceEEEEEEEecCCC----------C-------cch----
Confidence 99999997 899999999999999999999999999732 25789999987632 0 011
Q ss_pred HHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 594 FILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 594 ~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
...++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++
T Consensus 485 ~~~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~ 528 (529)
T 2v7b_A 485 ILAEELKAFVK-DRLAPHKYPRDIVFVDDL------PKTATGKIQRFKLRE 528 (529)
T ss_dssp HHHHHHHHHHH-TTSCTTTSCSEEEEESCC------CBCTTSCBCHHHHHC
T ss_pred hHHHHHHHHHH-hhcchhhCCeEEEEeccC------CCCCccchhHHhHhh
Confidence 12345666666 799999999999999765 899999999999986
No 20
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=2.3e-69 Score=609.38 Aligned_cols=502 Identities=16% Similarity=0.202 Sum_probs=414.9
Q ss_pred CCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHH
Q 006047 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (663)
...++.++|.++++ ||++|+++. + +++||+||.++++++|++|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG---E------RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC---C------ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 34789999999988 999999864 2 679999999999999999999999999999999999999999999
Q ss_pred HHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChh----hHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCc
Q 006047 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (663)
Q Consensus 122 A~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~----~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~ 197 (663)
||+++|++++|+++.++.+++.++++.+++++++++..... ............+..+........
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVTEHSSIRVVQLLNDSGE----------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHHSTTCCEEEEETCCST-----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhhcCCccceeeecccccc-----------
Confidence 99999999999999999999999999999999999987541 111111111134445555443321
Q ss_pred EEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh
Q 006047 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (663)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~ 277 (663)
..+.+...... .........+++++|++|||||||.||||+++|+++.+.+......+ ++.+++++++++|+
T Consensus 163 --~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p~ 234 (617)
T 3rg2_A 163 --HNLQDAINHPA-EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIPA 234 (617)
T ss_dssp --TBHHHHHHSCC-SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCT
T ss_pred --cchhhhhcccc-cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEeccc
Confidence 12333333221 12333455789999999999999999999999999999999888877 78999999999999
Q ss_pred hhHHHHHH--HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhh
Q 006047 278 AHIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (663)
Q Consensus 278 ~~~~g~~~--~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (663)
+|.+++.. ++.+++.|+++++.+. ++..+++.++++++|++.++|+.+..+++........
T Consensus 235 ~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~---------------- 298 (617)
T 3rg2_A 235 AHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR---------------- 298 (617)
T ss_dssp TSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT----------------
T ss_pred hhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc----------------
Confidence 99999875 7788999999999876 8999999999999999999999999987654322110
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCc
Q 006047 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434 (663)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~ 434 (663)
..++++|.+++||+++++++.+.+.+.+++++++.||+||++..+........
T Consensus 299 ---------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~ 351 (617)
T 3rg2_A 299 ---------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSAE 351 (617)
T ss_dssp ---------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCHH
T ss_pred ---------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCccc
Confidence 01158999999999999999999999899999999999999865554433322
Q ss_pred cccCccCccc-cCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEE
Q 006047 435 SMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLK 512 (663)
Q Consensus 435 ~~~~~~G~p~-~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~ 512 (663)
....++|.|+ ++++++|+| +++. +++.|+.|||+|+|+++++||+++++.|++.| .++||+|||+|++++||+|+
T Consensus 352 ~~~~~~G~p~~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~~dG~l~ 428 (617)
T 3rg2_A 352 KIIHTQGYPMCPDDEVWVAD-AEGN--PLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYIT 428 (617)
T ss_dssp HHHHCCCEESCTTCEEEEEC-TTSC--BCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEECTTSCEE
T ss_pred ccccCCCccCCCCceEEEEC-CCCC--CCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEcCCceEE
Confidence 3346789997 788999999 6664 55677999999999999999999999999999 78999999999999999999
Q ss_pred EeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcCh
Q 006047 513 IIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENP 589 (663)
Q Consensus 513 ~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 589 (663)
++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|++++.+.. .
T Consensus 429 ~~GR~dd~iki-~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~------------------~-- 487 (617)
T 3rg2_A 429 VQGREKDQINR-GGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEPL------------------R-- 487 (617)
T ss_dssp EEEECSSEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------C--
T ss_pred EEeecCCEEEE-CCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCCCC------------------C--
Confidence 99999999997 8999999999999999999999999987543 5888998877521 1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHHHH
Q 006047 590 KAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTFLL 652 (663)
Q Consensus 590 ~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~ 652 (663)
.+++++++++..|+.|++|..+++++.. |+|++||++|++|++.+.+....
T Consensus 488 ------~~~l~~~l~~~~lp~~~vP~~~~~v~~l------P~t~~GKidR~~L~~~~~~~~~~ 538 (617)
T 3rg2_A 488 ------AVQVRRFLREQGIAEFKLPDRVECVDSL------PLTAVGKVDKKQLRQWLASRASA 538 (617)
T ss_dssp ------HHHHHHHHHTTTCCGGGSCSEEEECSCC------CBCTTSSBCHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHhCCCccccCCcEEEEeccc------CCCCCCCCcHHHHHHHHhccccc
Confidence 1345555553379999999999999665 89999999999999998776544
No 21
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=5.2e-70 Score=603.54 Aligned_cols=493 Identities=18% Similarity=0.155 Sum_probs=396.7
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
+.++.++|+++++++|+++|+.+. + +++||+||.++++++|++|.+.|+++||+|+++++|++++++++||
T Consensus 3 ~~~l~~~l~~~a~~~p~~~a~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~lA 73 (521)
T 3l8c_A 3 LKDMIDSIEQFAQTQADFPVYDCL---G------ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFVA 73 (521)
T ss_dssp CCCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCcceecC---C------CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 578999999999999999999864 2 6799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|++++|+++.++.+++.++++.++++++|++++....+ .. .....+
T Consensus 74 ~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~----------------------~~~~~~ 123 (521)
T 3l8c_A 74 LTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EG----------------------ISLVSL 123 (521)
T ss_dssp HHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TT----------------------SEEEEH
T ss_pred HHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------cc----------------------Ccccch
Confidence 999999999999999999999999999999999987643211 00 112233
Q ss_pred HHHHhccc--ccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 203 DEFLQLGE--NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 203 ~~~~~~~~--~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.++..... ..........++++++++|||||||.||||++||+++++.+....... ......++++++..|++|.
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 200 (521)
T 3l8c_A 124 SEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIEDA---AFDVPKQPQMLAQPPYSFD 200 (521)
T ss_dssp HHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHCT---TTCCCSSCEEECCSCTTSG
T ss_pred hhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhcc---ccCCCCCCeEEecCCccHH
Confidence 33322111 112233456789999999999999999999999999998877665431 1267889999999999998
Q ss_pred HHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
.++..++.++..|+++++.+. ++..+++.+.++++|++.++|+++..+.....
T Consensus 201 ~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~----------------------- 257 (521)
T 3l8c_A 201 LSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD----------------------- 257 (521)
T ss_dssp GGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT-----------------------
T ss_pred HHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc-----------------------
Confidence 888878889999999998764 88999999999999999999999987653100
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC--
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE-- 433 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~-- 433 (663)
.. ...++++|.+++||+++++++.+.+.+.+ ++++++.||+||++..++......
T Consensus 258 --------------~~--------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~ 315 (521)
T 3l8c_A 258 --------------FC--------QAKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITREM 315 (521)
T ss_dssp --------------CS--------TTTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHHH
T ss_pred --------------cc--------cccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeeccccc
Confidence 00 01125899999999999999999998887 899999999999987665443221
Q ss_pred --ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccc----cCCceecCcEEEEcC
Q 006047 434 --MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM----VDGWFHTGDIGEWQP 507 (663)
Q Consensus 434 --~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~----~~g~~~TGDlg~~~~ 507 (663)
.....++|+|+++++++|+| +++. +++.|+.|||+|+||+++.||+++++.+++.| .+|||+|||+|++|+
T Consensus 316 ~~~~~~~~vG~p~~~~~~~i~d-~~g~--~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d~ 392 (521)
T 3l8c_A 316 VDNYTRLPIGYPKPDSPTYIID-EDGK--ELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLTE 392 (521)
T ss_dssp HHHCSSCEEEEECTTSCEEEEC-TTSC--BCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEECS
T ss_pred ccCCCccccccccCCCEEEEEC-CCcC--CCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEeC
Confidence 12246899999999999999 6665 45667999999999999999999999999987 357999999999999
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC----CeEEEEEecChHHHHHHHHHcCCCCChh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE----SFLVAIVNPNKDALERWAAENGVNGDFK 583 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~----~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 583 (663)
||++++.||.+|+|++ +|++|+|.+||++|.+||+|.+|+|++..+. +.++|+|++.++... .
T Consensus 393 dG~l~~~GR~~d~i~~-~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~----------~-- 459 (521)
T 3l8c_A 393 DNILLYGGRLDFQIKY-AGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKE----------R-- 459 (521)
T ss_dssp SSCEEEEEEGGGBCC------CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGG----------G--
T ss_pred CCeEEEeCcccceEeE-CCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccc----------c--
Confidence 9999999999999997 8999999999999999999999999986532 578999998874310 0
Q ss_pred hhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 584 SLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 584 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
.+. ...+.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++++.++-
T Consensus 460 ---~~~--~~~~~~~l~~~l~-~~l~~~~~P~~i~~v~~l------P~t~~GKidr~~L~~~~~~~~ 514 (521)
T 3l8c_A 460 ---FDR--ELELTKAIKASVK-DHMMSYMMPSKFLYRDSL------PLTPNGKIDIKTLINEVNNRE 514 (521)
T ss_dssp ---CSS--HHHHHHHHHHHSG-GGSCGGGSCSEEEECSSC------CBCTTSSBCHHHHHHHTC---
T ss_pred ---ccc--chhhHHHHHHHHH-hhCccccCCeEEEEeccc------CCCCCcCccHHHHhhhhhcCC
Confidence 000 1234566777777 789999999999998665 899999999999999987653
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=1.5e-69 Score=603.52 Aligned_cols=476 Identities=20% Similarity=0.258 Sum_probs=392.1
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
+...++.++|.++++++||++|+++. + +++||+||.++++++|++|.+.|+++||+|+|+++|++++++++
T Consensus 36 ~~~~~l~~~l~~~a~~~p~~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~ 106 (563)
T 1amu_A 36 PRDKTIHQLFEEQVSKRPNNVAIVCE---N------EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIGI 106 (563)
T ss_dssp CTTCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHCCCCeEEEeC---C------ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 44578999999999999999999864 2 67999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++|+++.++.+++.++++.++++++|++......+..... ...+..+....
T Consensus 107 lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~--------------- 166 (563)
T 1amu_A 107 LAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT--------------- 166 (563)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST---------------
T ss_pred HHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh---------------
Confidence 9999999999999999999999999999999999998865544322211 11233322110
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
+ ... ..........++++++++|||||||.||||++||+++.+.+......+ ++.++|++++++|++|.
T Consensus 167 ----~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 235 (563)
T 1amu_A 167 ----I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENSL-----NVTEKDRIGQFASISFD 235 (563)
T ss_dssp ----T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHTS-----CCCTTCEEEECSCTTST
T ss_pred ----h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHH
Confidence 0 000 011112344678999999999999999999999999998888776666 78899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (663)
.++..++.+++.|+++++.+. ++..+++.++++++|+++++|+++..+...
T Consensus 236 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------- 290 (563)
T 1amu_A 236 ASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------- 290 (563)
T ss_dssp HHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT-------------------------
T ss_pred HHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc-------------------------
Confidence 888778889999999998764 789999999999999999999988765210
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC--c
Q 006047 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE--M 434 (663)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~--~ 434 (663)
..+++|.+++||+++++++.+.+.+ .+.+++.||+||++..++...... .
T Consensus 291 --------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~~ 342 (563)
T 1amu_A 291 --------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKETI 342 (563)
T ss_dssp --------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSCC
T ss_pred --------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeecccccC
Confidence 0157999999999999999999876 488999999999987655443221 2
Q ss_pred cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc-------CCceecCcEEEEcC
Q 006047 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGDIGEWQP 507 (663)
Q Consensus 435 ~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~ 507 (663)
....++|+|+++++++|+| +++. +++.|+.|||+|+|++++.||+++++.|++.|. ++||+|||+|++|+
T Consensus 343 ~~~~~vG~p~~~~~v~i~d-~~~~--~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d~ 419 (563)
T 1amu_A 343 GHSVPIGAPIQNTQIYIVD-ENLQ--LKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWLS 419 (563)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEECT
T ss_pred CCCCcccceeCCCEEEEEC-CCcC--CCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEcC
Confidence 2346899999999999999 6665 456679999999999999999999999998883 35999999999999
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKS 584 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 584 (663)
||+|+++||.||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++..+.
T Consensus 420 dG~l~i~GR~~d~Ik~-~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~---------------- 482 (563)
T 1amu_A 420 DGNIEYLGRIDNQVKI-RGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKHI---------------- 482 (563)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSCC----------------
T ss_pred CCeEEEeccccCEEEE-CCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCCCC----------------
Confidence 9999999999999997 8999999999999999999999999997654 5789999876421
Q ss_pred hhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 585 LCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 585 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
. .++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++.+
T Consensus 483 --~--------~~~l~~~l~-~~L~~y~~P~~i~~v~~l------P~t~~GKi~r~~L~~~~ 527 (563)
T 1amu_A 483 --P--------LEQLRQFSS-EELPTYMIPSYFIQLDKM------PLTSNGKIDRKQLPEPD 527 (563)
T ss_dssp --C--------HHHHHHHHH-HHSCGGGSCSEEEECSSC------CBCTTSSBCGGGSCCCC
T ss_pred --C--------HHHHHHHHH-hhCchhhCCcEEEEeccc------CCCCCcChhHHhcCCcc
Confidence 1 134555565 689999999999999765 89999999999998754
No 23
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=1.2e-69 Score=609.62 Aligned_cols=473 Identities=18% Similarity=0.159 Sum_probs=384.7
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 41 ~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
....++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++||+|+|+++|++++++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 34578999999999999999999865 3 67999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++|++|.++.+++.++++.++++++++++...... .....+
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~---------------------- 144 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV---------------------- 144 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE----------------------
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee----------------------
Confidence 99999999999999999999999999999999999766432211 011111
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.+.... ........+...+++++|++|||||||.||||+++|+++.+.+.. ...+ .+.+++++++.+|++|.
T Consensus 145 ~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~~~-----~~~~~d~~l~~~p~~~~ 216 (620)
T 4dg8_A 145 PVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QSFL-----AFAPQMRFLVNSPLSFD 216 (620)
T ss_dssp EGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CGGG-----TTCTTCEEEECSCTTST
T ss_pred eeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HHhh-----CCCCCCEEEEECccCHH
Confidence 000000 001112233456899999999999999999999999999887765 3334 68899999999999999
Q ss_pred HHHHHHHHHHHcCcEEEEEcC---CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhh
Q 006047 281 FDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (663)
Q Consensus 281 ~g~~~~~~~l~~G~~~v~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (663)
.++..++.+++.|+++++.+. ++..+.+.|+++++|+++++|+++..+++...
T Consensus 217 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------ 272 (620)
T 4dg8_A 217 AATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------ 272 (620)
T ss_dssp HHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------
T ss_pred HHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------
Confidence 998888899999999998752 89999999999999999999999998764210
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCC---C
Q 006047 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPN---E 433 (663)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~---~ 433 (663)
..++++|.+++||+++++++.+.+.+.+ ++++++.||+||++.+++..... .
T Consensus 273 ------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 328 (620)
T 4dg8_A 273 ------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDL 328 (620)
T ss_dssp ------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGG
T ss_pred ------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccccc
Confidence 0115899999999999988877776655 89999999999998766543222 1
Q ss_pred ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccC--------CceecCcEEEE
Q 006047 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD--------GWFHTGDIGEW 505 (663)
Q Consensus 434 ~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~--------g~~~TGDlg~~ 505 (663)
.....++|+|+++++++|+| +++.. .++.|+.|||+|+|+.+++||+++++.|++.|.+ +||+|||+|++
T Consensus 329 ~~~~~~iG~p~~~~~~~i~d-~~~~~-~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 329 EEDDIPIGKAIAGTAVLLLD-EHGQE-IAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp GSSSCCCBEECTTEEEEEEC-TTSCB-CCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCCCCCceecccCcEEEEEC-ccCCC-CCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 22346899999999999999 66553 3556899999999999999999999999999843 79999999999
Q ss_pred cCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC--CeEEEEEecChHHHHHHHHHcCCCCChh
Q 006047 506 QPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE--SFLVAIVNPNKDALERWAAENGVNGDFK 583 (663)
Q Consensus 506 ~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~ 583 (663)
++||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ ..++++++...+. +
T Consensus 407 ~~dG~l~~~GR~dd~Ik~-~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~lv~~~~~~~~~-------------~- 471 (620)
T 4dg8_A 407 DEQGRLRFIGRGDGQVKL-NGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQLLCAWTGKADA-------------S- 471 (620)
T ss_dssp CTTSCEEEEECSSSEEEE-TTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEEEEEEEEECTTC-------------C-
T ss_pred CCCCeEEEEccCCCEEEE-CCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceEEEEEEecChHH-------------H-
Confidence 999999999999999998 8999999999999999999999999986654 3555555543211 0
Q ss_pred hhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHH
Q 006047 584 SLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 584 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
.+.+ . ..|+.|++|+.+++++.. |+|++||++|++|++.+.+
T Consensus 472 ------------~~~l----~-~~Lp~y~~P~~~~~v~~l------P~t~~GKidR~~L~~~~~~ 513 (620)
T 4dg8_A 472 ------------PQAL----L-RQLPTWQRPHACVRVEAL------PLTAHGKLDRAALLRRLEE 513 (620)
T ss_dssp ------------CHHH----H-HHSCGGGSCSEEEECSSC------CCC----CCHHHHHHHTCS
T ss_pred ------------HHHH----H-HhChhhcCCcEEEEECcC------CCCcccCHhHHHHhhcccc
Confidence 1112 1 469999999999999665 8999999999999887644
No 24
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=1.3e-69 Score=597.51 Aligned_cols=491 Identities=21% Similarity=0.245 Sum_probs=375.4
Q ss_pred CHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHH
Q 006047 45 SCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACN 124 (663)
Q Consensus 45 ~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~ 124 (663)
||.++|.++++++||++|+++. + +++||+||.++++++|++|.+. +||+|+++++|++++++++|||+
T Consensus 2 tl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~~ 69 (501)
T 3ipl_A 2 SLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHACW 69 (501)
T ss_dssp -CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHHH
Confidence 6778999999999999999864 2 5799999999999999999987 89999999999999999999999
Q ss_pred hcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE-eHH
Q 006047 125 ALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY-SWD 203 (663)
Q Consensus 125 ~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~ 203 (663)
++|++++|+++.++.+++.++|+.++++++|++............. ..+..+.......... . ........ ...
T Consensus 70 ~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~ 144 (501)
T 3ipl_A 70 LANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVSL--DDIEFAGRDITTNGLL-D--NTMGIQYDTSNE 144 (501)
T ss_dssp HTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEET--TC------------------------------
T ss_pred HcCCEEEecCccCCHHHHHHHHHhcCCCEEEEcccccccccccccc--ccceeeeeeccccccc-c--cccccccccchh
Confidence 9999999999999999999999999999999998765433221110 1111111100000000 0 00000000 011
Q ss_pred HHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH
Q 006047 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR 283 (663)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~ 283 (663)
.................++++++++|||||||.||+|.+||+++.+.+......+ ++.++|++++.+|++|.+|+
T Consensus 145 ~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g~ 219 (501)
T 3ipl_A 145 TVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISGL 219 (501)
T ss_dssp -----CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHHH
T ss_pred hccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHHH
Confidence 1111111111223345789999999999999999999999999999998887777 78999999999999999999
Q ss_pred HHHHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCC
Q 006047 284 AIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGH 362 (663)
Q Consensus 284 ~~~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (663)
..++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus 220 ~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~---------------------------- 271 (501)
T 3ipl_A 220 SVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH---------------------------- 271 (501)
T ss_dssp HHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC----------------------------
T ss_pred HHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC----------------------------
Confidence 888889999999999876 999999999999999999999999988652110
Q ss_pred CCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCC-ccccCccC
Q 006047 363 KHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTVG 441 (663)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~~~G 441 (663)
...++|.+++||+++++++.+.+++ +++++++.||+||+++.+....... .....++|
T Consensus 272 --------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G 330 (501)
T 3ipl_A 272 --------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTVG 330 (501)
T ss_dssp --------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCCB
T ss_pred --------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCCC
Confidence 0026899999999999999999987 5999999999999987655544322 23357899
Q ss_pred ccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeecccee
Q 006047 442 PPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIF 521 (663)
Q Consensus 442 ~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i 521 (663)
.|+++++++|+| ++ .|+.|||+|+|+.++.||+++++.+.+ |.+|||+|||+|++++||++++.||.+|+|
T Consensus 331 ~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~~~G~l~~~GR~dd~i 401 (501)
T 3ipl_A 331 MPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEIDHEGYVMIYDRRKDLI 401 (501)
T ss_dssp EECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEECTTSCEEEEEECCCCE
T ss_pred CCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEcCCCeEEEEccccceE
Confidence 999999999999 43 346899999999999999999998887 889999999999999999999999999999
Q ss_pred ecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHH
Q 006047 522 KLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGE 598 (663)
Q Consensus 522 ~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 598 (663)
++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++++++...+. . .++
T Consensus 402 k~-~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~~~~------------------~--------~~~ 454 (501)
T 3ipl_A 402 IS-GGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESDI------------------S--------KAQ 454 (501)
T ss_dssp EC-SSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSCC------------------C--------HHH
T ss_pred EE-CCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeCCCC------------------C--------HHH
Confidence 96 8999999999999999999999999997654 4788888865321 1 134
Q ss_pred HHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHHHHH
Q 006047 599 LSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVT 649 (663)
Q Consensus 599 l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~ 649 (663)
|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++.+++.
T Consensus 455 l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~R~~l~~~~~~~ 498 (501)
T 3ipl_A 455 LIAYLS-KHLAKYKVPKHFEKVDTL------PYTSTGKLQRNKLYREGHHH 498 (501)
T ss_dssp HHHHHH-HHSCGGGSCSEEEECSSC------C-------------------
T ss_pred HHHHHH-hhCccccCCCEEEEeccc------CCCCCCCEeHHHHhhccccc
Confidence 555555 679999999999999766 89999999999999988764
No 25
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.8e-69 Score=641.44 Aligned_cols=537 Identities=24% Similarity=0.284 Sum_probs=345.9
Q ss_pred CCCcCceeecccccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCC
Q 006047 20 RPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCG 99 (663)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~g 99 (663)
.+..+.+|++..... ..+...++.++|.++++++||++|+++. +.. +++||+||.++++++|++|+++|
T Consensus 41 ~~~~~~~~~~~~~~~----~~p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~~G 109 (979)
T 3tsy_A 41 NNNSDVIFRSKLPDI----YIPNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANFHKLG 109 (979)
T ss_dssp ----CCCBCCSSCCC----CCCTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCceeecCCCCC----CCCCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHHcC
Confidence 345566777754322 2345689999999999999999999864 322 67999999999999999999999
Q ss_pred CCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEE
Q 006047 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIV 179 (663)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii 179 (663)
+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+....... ...++
T Consensus 110 v~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~---~~~~~ 186 (979)
T 3tsy_A 110 VNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD---GVVIV 186 (979)
T ss_dssp CCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS---CCEEE
T ss_pred CCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC---CceEE
Confidence 999999999999999999999999999999999999999999999999999999999987665444332111 12344
Q ss_pred EecCCChhhHHHHhhcCcEEEeHHHHHhcccc--cCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhh
Q 006047 180 SFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257 (663)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~ 257 (663)
.++..... .......++.++...... ...+.....++++++++|||||||.||||+++|+++++.+......
T Consensus 187 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~ 260 (979)
T 3tsy_A 187 CIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQQVDG 260 (979)
T ss_dssp ECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHHHHCS
T ss_pred EeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHHHHHh
Confidence 44332110 001124455555543322 1233445678999999999999999999999999999887765432
Q ss_pred hhhccccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHH
Q 006047 258 LESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335 (663)
Q Consensus 258 ~~~~~~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~ 335 (663)
.. ....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus 261 ~~-~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~- 338 (979)
T 3tsy_A 261 EN-PNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKSSET- 338 (979)
T ss_dssp SS-CSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHCGGG-
T ss_pred hc-ccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhCccc-
Confidence 10 0125778999999999999999965 6778999999999876 999999999999999999999999988652110
Q ss_pred HhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCcee
Q 006047 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVL 414 (663)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~ 414 (663)
. ...++++|.+++||+++++++.+++++.+ +++++
T Consensus 339 ------------------------------------~--------~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~ 374 (979)
T 3tsy_A 339 ------------------------------------E--------KYDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLG 374 (979)
T ss_dssp ------------------------------------G--------TSCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEE
T ss_pred ------------------------------------c--------CCCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEE
Confidence 0 11126899999999999999999999888 89999
Q ss_pred ecccccccccceeccC----CCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhc
Q 006047 415 QGYGLTETCAGTFVSL----PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490 (663)
Q Consensus 415 ~~yG~tE~~~~~~~~~----~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~ 490 (663)
+.||+||++.+++... .......+++|.|+++++++|+|.+++ .+++.|+.|||+|+|+.++.||+++|+.+++
T Consensus 375 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~--~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~ 452 (979)
T 3tsy_A 375 QGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTG--DSLSRNQPGEICIRGHQIMKGYLNNPAATAE 452 (979)
T ss_dssp ECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSC--CBCCTTCCEEEEEESTTSCSEETTCHHHHHH
T ss_pred eeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCC--CCCCCCCccEEEEECCCccccccCChhhhhh
Confidence 9999999997665432 112233578999999999999993334 4566789999999999999999999999999
Q ss_pred cc-cCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecCh
Q 006047 491 VM-VDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNK 566 (663)
Q Consensus 491 ~~-~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~ 566 (663)
.| .+|||+|||+|++++||+|+++||.||+||+ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.+
T Consensus 453 ~f~~~g~~~TGDl~~~~~dG~l~~~GR~dd~ik~-~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~ 531 (979)
T 3tsy_A 453 TIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKY-KGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSK 531 (979)
T ss_dssp HBCTTSCEEEEEEEEECTTSCEEEEEESCC--------------------------------------------------
T ss_pred hccCCCcEEcCCEEEEcCCceEEEecCCCCEEEE-CCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECC
Confidence 99 7999999999999999999999999999997 8999999999999999999999999997654 58899998766
Q ss_pred HHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHHH
Q 006047 567 DALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHY 646 (663)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~ 646 (663)
+.. .-.++|+++++ +.|+.|++|+.|++++.. |+|++||++|++|+++|
T Consensus 532 ~~~------------------------~~~~~l~~~l~-~~l~~~~~p~~i~~v~~l------P~t~~GKi~r~~L~~~~ 580 (979)
T 3tsy_A 532 DSE------------------------LSEDDVKQFVS-KQVVFYKRINKVFFTESI------PKAPSGKILRKDLRAKL 580 (979)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCC------------------------CCHHHHHHHHH-HhcccccCCeEEEEeCCc------CcCCCCCeeHHHHHHHH
Confidence 430 01234455555 789999999999988665 89999999999999999
Q ss_pred HHHHHHHhcc
Q 006047 647 QVTFLLVFSE 656 (663)
Q Consensus 647 ~~~~~~~~~~ 656 (663)
.+.+...|..
T Consensus 581 ~~~~~~~~~~ 590 (979)
T 3tsy_A 581 ANGLGSGMAS 590 (979)
T ss_dssp --------CC
T ss_pred HhhcCCcccc
Confidence 9888777754
No 26
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=2.4e-69 Score=594.70 Aligned_cols=476 Identities=24% Similarity=0.318 Sum_probs=374.5
Q ss_pred CCCCHHHHHHHHHHhCCC-CCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHH
Q 006047 42 GMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (663)
Q Consensus 42 ~~~~l~~~l~~~a~~~Pd-~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (663)
.|.++.+.|.++++++|+ ++|+++. + +++||+||.++++++|.+|. .|++|+++++|++++++++
T Consensus 20 ~~~tl~~~l~~~a~~~p~d~~Al~~~---~------~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~~~~ 85 (505)
T 3nyq_A 20 HMSSLFPALSPAPTGAPADRPALRFG---E------RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETGVAV 85 (505)
T ss_dssp ----CCTTTSSCCCSGGGGSEEEEET---T------EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHHHHH
T ss_pred ccchhHHHHHHHHHhCCCCCeEEEEC---C------eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHHHHH
Confidence 478899999999999987 9999864 2 67999999999999998774 4889999999999999999
Q ss_pred HHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEE
Q 006047 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (663)
Q Consensus 121 lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~ 200 (663)
|||+++|++++|+++.++.+++.++|+.++++++|++.+... ......+..+ .+...
T Consensus 86 la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~---------------- 142 (505)
T 3nyq_A 86 VAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR---------------- 142 (505)
T ss_dssp HHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT----------------
T ss_pred HHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc----------------
Confidence 999999999999999999999999999999999999875211 0001111111 11110
Q ss_pred eHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhH
Q 006047 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (663)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~ 280 (663)
.....+.....++++++++|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|++|.
T Consensus 143 ---------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~ 208 (505)
T 3nyq_A 143 ---------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPLFHV 208 (505)
T ss_dssp ---------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCTTSH
T ss_pred ---------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccHHHH
Confidence 0111223345779999999999999999999999999999999888877 88999999999999999
Q ss_pred HHHHH-HHHHHHcCcEEEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 281 FDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 281 ~g~~~-~~~~l~~G~~~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
.|+.. ++.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+....
T Consensus 209 ~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~---------------------- 265 (505)
T 3nyq_A 209 HGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPADP---------------------- 265 (505)
T ss_dssp HHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGCH----------------------
T ss_pred HHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcCc----------------------
Confidence 99875 7888999999998876 889999999 8899999999999999876432110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccC
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIG 438 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~ 438 (663)
. ....+ +++|.+++||+++++++.+++.+.+++++++.||+||++..+....... ....
T Consensus 266 -----------~-~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~~~~ 324 (505)
T 3nyq_A 266 -----------E-LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PRAG 324 (505)
T ss_dssp -----------H-HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-CCTT
T ss_pred -----------h-hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-CCCC
Confidence 0 00011 4789999999999999999999989999999999999987766554433 3348
Q ss_pred ccCccccCeEEEEeecCCCccccC-CCCCCCeEEEccCcccccccCChhhhhccc-cCCceecCcEEEEcCCCcEEEeee
Q 006047 439 TVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGDIGEWQPDGSLKIIDR 516 (663)
Q Consensus 439 ~~G~p~~~~~v~iv~~~~~~~~~~-~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~-~~g~~~TGDlg~~~~~G~l~~~GR 516 (663)
++|+|+++++++|+| +++...+. +.|+.|||+|+|++++.||+++++.+++.| .+|||+|||+|++++||+|+++||
T Consensus 325 ~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~~dG~l~~~GR 403 (505)
T 3nyq_A 325 TVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGR 403 (505)
T ss_dssp CCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEECTTSCEEEEEE
T ss_pred CcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEECCCccEEEeCC
Confidence 899999999999999 77765553 447999999999999999999999999999 699999999999999999999999
Q ss_pred c-cceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHH
Q 006047 517 K-KNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAK 592 (663)
Q Consensus 517 ~-~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 592 (663)
. ||+|++ +|++|+|.|||++|.+||+|.+|+|++.+++ +.++|+|++.++. ....
T Consensus 404 ~~d~~ik~-~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~-------------------~~~~- 462 (505)
T 3nyq_A 404 KATDLIKS-GGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPA-------------------APPA- 462 (505)
T ss_dssp SSCCCEEE-TTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTT-------------------SCCC-
T ss_pred ccCceEEe-CCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCC-------------------CCCC-
Confidence 8 589996 8999999999999999999999999997654 5899999987532 0001
Q ss_pred HHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHH
Q 006047 593 EFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLK 644 (663)
Q Consensus 593 ~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~ 644 (663)
.++|+++++ ..|+.|++|+.|++++.. |+|++||++|++|++
T Consensus 463 ---~~~l~~~l~-~~L~~~~~P~~i~~v~~l------P~t~~GKi~r~~L~~ 504 (505)
T 3nyq_A 463 ---LGTLADHVA-ARLAPHKRPRVVRYLDAV------PRNDMGKIMKRALNR 504 (505)
T ss_dssp ---HHHHHHHHH-HHTCGGGSCSEEEECSCC------CC-------------
T ss_pred ---HHHHHHHHH-hhCCCCcCccEEEEECCC------CCCCCcCeeHHhhcc
Confidence 234555555 679999999999999765 899999999999976
No 27
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.2e-67 Score=590.28 Aligned_cols=518 Identities=18% Similarity=0.242 Sum_probs=404.6
Q ss_pred cccCCCCCCCCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEc
Q 006047 31 FAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYG 110 (663)
Q Consensus 31 ~~~~~~~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~ 110 (663)
..++.+|...+++.++.++|+++++.+|+.+++.. .....+++||+||.++++++|++|+++|+++||+|++++
T Consensus 8 ~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~ 81 (576)
T 3gqw_A 8 IFTHSLPMRYADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIA 81 (576)
T ss_dssp ------CCCCSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEEC
T ss_pred hhcCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 44667888888999999999999999999877742 222337899999999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHhcCCeEeeccCCCC-------hHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecC
Q 006047 111 VNCPEWIIGMEACNALGLHCVPLYDTLG-------AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK 183 (663)
Q Consensus 111 ~n~~~~~~~~lA~~~~G~v~v~l~~~~~-------~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 183 (663)
+|++++++++|||+++|++++|+++.++ .+++.++++.++++++|++++....+....... ... .
T Consensus 82 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~-~------ 153 (576)
T 3gqw_A 82 ETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PEL-H------ 153 (576)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTC-E------
T ss_pred CCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccc-e------
Confidence 9999999999999999999999999998 789999999999999999988766554433211 111 1
Q ss_pred CChhhHHHHhhcCcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhh-hhhcc
Q 006047 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL-LESVN 262 (663)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~-~~~~~ 262 (663)
....... ..............++++++++|||||||.||||+++|+++++.+..+... +
T Consensus 154 ---------------~~~~~~~-~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~~---- 213 (576)
T 3gqw_A 154 ---------------VLSHAWF-KALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHDGI---- 213 (576)
T ss_dssp ---------------EEEHHHH-HTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHTTS----
T ss_pred ---------------ecchhhh-hcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhccc----
Confidence 1111111 111122233344568999999999999999999999999999988776543 4
Q ss_pred ccCCCCcEEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHH
Q 006047 263 EKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKI 336 (663)
Q Consensus 263 ~~~~~~d~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~ 336 (663)
++.++|++++++|++|.+|+.. ++.++..|+++++.+. ++..+++.++++++|+++++|+++..+.+.+...
T Consensus 214 -~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~- 291 (576)
T 3gqw_A 214 -KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK- 291 (576)
T ss_dssp -CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH-
T ss_pred -CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc-
Confidence 7889999999999999999876 6677899999888763 7899999999999999999999998775432111
Q ss_pred hcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc------C
Q 006047 337 SSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA------C 410 (663)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~------~ 410 (663)
......++++|.+++||+++++++.+.+.+.+ +
T Consensus 292 -----------------------------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~ 330 (576)
T 3gqw_A 292 -----------------------------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDN 330 (576)
T ss_dssp -----------------------------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCG
T ss_pred -----------------------------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCc
Confidence 11112236899999999999999999999887 7
Q ss_pred CceeecccccccccceeccCCCCc---------------------------cccCccCccccCeEEEEeecCCCccccCC
Q 006047 411 AHVLQGYGLTETCAGTFVSLPNEM---------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALS 463 (663)
Q Consensus 411 ~~v~~~yG~tE~~~~~~~~~~~~~---------------------------~~~~~~G~p~~~~~v~iv~~~~~~~~~~~ 463 (663)
..+++.||+||++..++....... ....++|+|+++++++|+| +++. +++
T Consensus 331 ~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~--~~~ 407 (576)
T 3gqw_A 331 KTFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGM--PVA 407 (576)
T ss_dssp GGEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSC--BCC
T ss_pred ccccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCC--CCC
Confidence 899999999999987765532211 0113789999999999999 6665 456
Q ss_pred CCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHHhcCcC
Q 006047 464 STPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSA 543 (663)
Q Consensus 464 ~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~ 543 (663)
.|+.|||+|+|+.++.||+++++.+.+.+.+|||+|||+|++ +||+|+++||.||+|++ +|++|+|.|||++|.+||+
T Consensus 408 ~g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~-~dG~l~~~GR~dd~ik~-~G~~v~p~eIE~~l~~~p~ 485 (576)
T 3gqw_A 408 ERVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL-LDGYLYVTGRIKDLIII-RGRNIWPQDIEYIAEQEPE 485 (576)
T ss_dssp TTBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE-ETTEEEEEEETTTCEEE-TTEEECHHHHHHHHTTSSS
T ss_pred CCCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE-ECCEEEEEecCcceEEE-CCEEECHHHHHHHHHhCcc
Confidence 679999999999999999999998888889999999999999 69999999999999997 8999999999999999999
Q ss_pred cceEEEEeeCCC-CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccC
Q 006047 544 IDSVWVYGNSFE-SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPV 622 (663)
Q Consensus 544 V~~~~v~~~~~~-~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~ 622 (663)
|.+++|++..+. ..++++++.... .....+.+.+.+.+.+. +.++.|..+.+++.
T Consensus 486 V~~~~vv~~~~~~~~~~~~~~~~~~--------------------~~~~~~~l~~~l~~~l~----~~~~~p~~i~~v~~ 541 (576)
T 3gqw_A 486 IHSGDAIAFVTAQEKIILQIQCRIS--------------------DEERRGQLIHALAARIQ----SEFGVTAAIDLLPP 541 (576)
T ss_dssp CCTTSEEEEECTTSCEEEEEECCCC--------------------CHHHHHHHHHHHHHHHH----HHHSCCEEEEEECS
T ss_pred cccccEEEEEcCCccEEEEEEEecC--------------------chhHHHHHHHHHHHHHH----HHhCCceeEEEECC
Confidence 998777764333 344444444321 22223334444443321 46788888888741
Q ss_pred CCCCCCCccCcccccchHHHHHHHHHHHHHHhcccc
Q 006047 623 PFDIERDLLTPTYKKKRPQLLKHYQVTFLLVFSEYS 658 (663)
Q Consensus 623 ~~~~~~~p~t~~GKv~R~~l~~~~~~~~~~~~~~~~ 658 (663)
+.+|+|++||++|++|+++|++.+...|..++
T Consensus 542 ----~~lP~t~~GKi~r~~l~~~~~~~~~~~~~~~~ 573 (576)
T 3gqw_A 542 ----HSIPRTSSGKPARAEAKKRYQKAYAASLNVQE 573 (576)
T ss_dssp ----SCSCBCTTSSBCHHHHHHHHHHHHTCC-----
T ss_pred ----CCcCcCCCccchHHHHHHHHHHHhhhccchhh
Confidence 23489999999999999999999887776544
No 28
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=1.1e-67 Score=594.37 Aligned_cols=505 Identities=18% Similarity=0.189 Sum_probs=396.5
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
..+..++.++|.++++.+||++|+++. ++ +..+++||+||.++++++|++|++.|+++||+|+++++|+++++++
T Consensus 7 ~~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~ 81 (590)
T 3kxw_A 7 YLQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQA 81 (590)
T ss_dssp HHTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred hcCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHH
Confidence 345689999999999999999999886 42 2337899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCeEeeccCCC---ChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcC
Q 006047 120 MEACNALGLHCVPLYDTL---GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~~~---~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 196 (663)
+|||+++|++++|+++.+ +.+++.++++.+++++++++.+....+........+....+
T Consensus 82 ~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~------------------ 143 (590)
T 3kxw_A 82 FLGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKI------------------ 143 (590)
T ss_dssp HHHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTE------------------
T ss_pred HHHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhccccccc------------------
Confidence 999999999999999988 45789999999999999998776554433221111111111
Q ss_pred cEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCC
Q 006047 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (663)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p 276 (663)
.....+.+... ...........++++++++|||||||.||||++||+++++.+......+ ++.++|++++++|
T Consensus 144 -~~~~~~~~~~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p 216 (590)
T 3kxw_A 144 -PAIALESIELN-RSSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLP 216 (590)
T ss_dssp -EEEEGGGCCGG-GGGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSC
T ss_pred -ceeechhcccc-ccccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecC
Confidence 11122221111 1112334456789999999999999999999999999999999988777 8899999999999
Q ss_pred hhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006047 277 LAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (663)
Q Consensus 277 ~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (663)
++|.+|+.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|..+..+++.+.....
T Consensus 217 ~~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~------------- 283 (590)
T 3kxw_A 217 PHHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKK------------- 283 (590)
T ss_dssp TTSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG-------------
T ss_pred CCcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhc-------------
Confidence 999999987 7888999999998864 789999999999999999999999988764321110
Q ss_pred HHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC------Cceeeccccccccc
Q 006047 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETCA 424 (663)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~yG~tE~~~ 424 (663)
....++++|.+++||+++++++.+.+.+.++ ..+++.||+||++.
T Consensus 284 -----------------------------~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~ 334 (590)
T 3kxw_A 284 -----------------------------EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATL 334 (590)
T ss_dssp -----------------------------TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSS
T ss_pred -----------------------------cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccc
Confidence 0112268999999999999999999998873 47999999999998
Q ss_pred ceeccCCC--------------------------CccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCccc
Q 006047 425 GTFVSLPN--------------------------EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVF 478 (663)
Q Consensus 425 ~~~~~~~~--------------------------~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~ 478 (663)
.++..... ......++|.|+++ ++|+| +++ ..+++.|+.|||+|+||+++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~-~~~~~~g~~GEl~v~g~~v~ 410 (590)
T 3kxw_A 335 LVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDT-LIPCDFDQVGEIWVQSNSVA 410 (590)
T ss_dssp EEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTT-CCBCCTTBCEEEEEESTTSC
T ss_pred eeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCC-CcCCCCCCEEEEEEeCCccc
Confidence 77654321 11224678999998 78888 442 35667789999999999999
Q ss_pred ccccCChhhhhccccC-------C--ceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHH-hcCcCcc--e
Q 006047 479 SGYYKREDLTKEVMVD-------G--WFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY-ALVSAID--S 546 (663)
Q Consensus 479 ~gy~~~~~~~~~~~~~-------g--~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l-~~~~~V~--~ 546 (663)
.||+++++.+++.|.+ | ||+|||+|++| ||+|+++||.||+|++ +|++|+|.|||++| ..+|+|. +
T Consensus 411 ~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~v~~~~ 488 (590)
T 3kxw_A 411 KGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIII-YGKNHYPQDIEFSLMHSPLHHVLGK 488 (590)
T ss_dssp CCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHH-HHHTTHHHHHHHHHHHSGGGGGEEE
T ss_pred ccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEE-CCEecCHHHHHHHHHhcCccccCcc
Confidence 9999999999998843 5 99999999999 9999999999999997 89999999999999 8999998 7
Q ss_pred EEEEeeCCC--CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCcccee-EEEEccCC
Q 006047 547 VWVYGNSFE--SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEFIK-AVHLEPVP 623 (663)
Q Consensus 547 ~~v~~~~~~--~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~-~i~~~~~~ 623 (663)
|+|++.+++ +.+++++++.++. ......+.+.+.+++.+.. .++.|. .+.++.
T Consensus 489 ~~v~~~~~~~~~~~~~~v~~~~~~------------------~~~~~~~~l~~~l~~~l~~----~~~~p~~~i~~v~-- 544 (590)
T 3kxw_A 489 CAAFVIQEEHEYKLTVMCEVKNRF------------------MDDVAQDNLFNEIFELVYE----NHQLEVHTIVLIP-- 544 (590)
T ss_dssp EEEEEEEETTEEEEEEEEEESCTT------------------CCHHHHHHHHHHHHHHHHH----HHSCCCCEEEEEE--
T ss_pred EEEEEecCCCCceEEEEEEecccc------------------ccchhHHHHHHHHHHHHHH----HcCCceeEEEEEC--
Confidence 888886543 5788888876532 1122234445555544431 244453 455542
Q ss_pred CCCCCCccCcccccchHHHHHHHHH
Q 006047 624 FDIERDLLTPTYKKKRPQLLKHYQV 648 (663)
Q Consensus 624 ~~~~~~p~t~~GKv~R~~l~~~~~~ 648 (663)
++.+|+|++|||+|++|+++|.+
T Consensus 545 --~~~lP~t~sGKi~R~~L~~~~~~ 567 (590)
T 3kxw_A 545 --LKAMPHTTSGKIRRNFCRKHLLD 567 (590)
T ss_dssp --TTCSCCCSCHHHHHHHHHHHHHH
T ss_pred --CCccCcCCCcHHHHHHHHHHHHc
Confidence 12238999999999999999876
No 29
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=6.2e-68 Score=592.22 Aligned_cols=525 Identities=18% Similarity=0.160 Sum_probs=318.5
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceEEEee-ccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh
Q 006047 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREI-VDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (663)
Q Consensus 37 ~~~~~~~~~l~~~l~~~a~~~Pd~~al~~~~~-~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~ 115 (663)
.....+..|+.++|+++++++||++|+++... .+......+++||+||.++++++|++|.+.|+ +||+|+++++|+++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~~ 91 (562)
T 3ite_A 13 SAQYTSTVPPSHYIETWAKTHPEWKAVEVATGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDRSLI 91 (562)
T ss_dssp -----CCCCTTHHHHHHHHHCTTSEEEEEEECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCSCHH
T ss_pred ceeecccCCHHHHHHHHHHHCCCchhhhcccccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCCCHH
Confidence 34445668899999999999999999987610 01112234789999999999999999999999 79999999999999
Q ss_pred hHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhc
Q 006047 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (663)
Q Consensus 116 ~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~ 195 (663)
+++++|||+++|++++|+++.++.+++.++|+.++++++|+++....... ......++....
T Consensus 92 ~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~------------ 153 (562)
T 3ite_A 92 AFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE------LPPETKVLDTKN------------ 153 (562)
T ss_dssp HHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC------CCTTCEEEETTC------------
T ss_pred HHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc------cCccceeecccc------------
Confidence 99999999999999999999999999999999999999999876543221 011122222111
Q ss_pred CcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhh---hccccCCCCcEEE
Q 006047 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---SVNEKLTSEDVYV 272 (663)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~---~~~~~~~~~d~~~ 272 (663)
..+.+.+..... ........++++++++|||||||.||||++||+++.+.+..+...+. .....+...++++
T Consensus 154 ----~~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (562)
T 3ite_A 154 ----QSFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFL 228 (562)
T ss_dssp ----HHHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEE
T ss_pred ----hhhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCceEE
Confidence 012222222211 12233456788999999999999999999999999998877655432 1112477889999
Q ss_pred EcCChhhHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006047 273 SYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (663)
Q Consensus 273 ~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (663)
+..|++|..++..++.++..|+++++.+. .+..+.+.++++++|+++++|+++..+..
T Consensus 229 ~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~-------------------- 288 (562)
T 3ite_A 229 CLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGL-------------------- 288 (562)
T ss_dssp CCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTC--------------------
T ss_pred EecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhccc--------------------
Confidence 99999998888778889999999988764 46788899999999999999998766421
Q ss_pred HHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccC
Q 006047 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (663)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 430 (663)
. ....+++|.+++||+++++++.+.+++.+++.+++.||+||++..+....
T Consensus 289 -----------------~------------~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~ 339 (562)
T 3ite_A 289 -----------------V------------PEDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCSAGR 339 (562)
T ss_dssp -----------------C------------GGGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSEEEE
T ss_pred -----------------C------------ccccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeeeeee
Confidence 0 01125899999999999999999999888999999999999987766554
Q ss_pred CCCccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCC--ceecCcEEEEcCC
Q 006047 431 PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTGDIGEWQPD 508 (663)
Q Consensus 431 ~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g--~~~TGDlg~~~~~ 508 (663)
........++|.|+++++++|++ +++. .+++.|+.|||+|+|++++.||+++++.+...+.+| ||+|||+|++|+|
T Consensus 340 ~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~d~d 417 (562)
T 3ite_A 340 ILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRMDAD 417 (562)
T ss_dssp CCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEECTT
T ss_pred ecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEEcCC
Confidence 44444457899999999999998 4332 456678999999999999999999999888777677 9999999999999
Q ss_pred CcEEEeeeccceeecCCCceeccHHHHHHHhcC-cCcceEEEEeeCCC---C-eEEEEEecChHHHHHHHHHcCCCCChh
Q 006047 509 GSLKIIDRKKNIFKLSQGEYVAVENLENIYALV-SAIDSVWVYGNSFE---S-FLVAIVNPNKDALERWAAENGVNGDFK 583 (663)
Q Consensus 509 G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~-~~V~~~~v~~~~~~---~-~~~a~v~~~~~~~~~~~~~~~~~~~~~ 583 (663)
|+|+++||.||+|++ +|++|+|.|||++|.+| |.+.+++|++.+++ + .+++++......... .+.
T Consensus 418 G~l~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~~ 487 (562)
T 3ite_A 418 SSILFLGRKDEQVKV-RGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRG---------ELR 487 (562)
T ss_dssp SCEEEEEEC-----------------------------------------------------------------------
T ss_pred CeEEEEccccCEEeE-CcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccc---------ccc
Confidence 999999999999996 89999999999999888 77888888876654 2 344444433322100 000
Q ss_pred hhhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccC-cccccchHHHHHHHHHHH-HHHhcc
Q 006047 584 SLCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLT-PTYKKKRPQLLKHYQVTF-LLVFSE 656 (663)
Q Consensus 584 ~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t-~~GKv~R~~l~~~~~~~~-~~~~~~ 656 (663)
. ..+..+.+.++|+++++ .+|+.|++|+.|++++.. |+| ++||++|++|+++|++.. ..+++.
T Consensus 488 ~---~~~~~~~~~~~l~~~~~-~~L~~y~~P~~i~~v~~l------P~t~~~GKi~r~~L~~~~~~~~~~~~~~~ 552 (562)
T 3ite_A 488 W---INENYKEINNSLRQACE-QTLPAYMVPDFIIPISFI------PLRDTSAKTDAKALEHMFHTLSLGELFGE 552 (562)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred c---cccchhhHHHHHHHHHH-hhCCcccCCcEEEEeccC------CCCCCCCcchHHHHHHHHhccCHHHHhcc
Confidence 0 00112334567777777 789999999999998765 788 899999999999997643 444443
No 30
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=1.3e-64 Score=614.57 Aligned_cols=477 Identities=19% Similarity=0.253 Sum_probs=394.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHHHHH
Q 006047 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (663)
Q Consensus 43 ~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (663)
..++.++|.++++++||++|+++. + +++||+||.++++++|++|++.|+++|++|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 3 5799999999999999999999999999999999999999999999
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCCChhhHHHHhhcCcEEEeH
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ 202 (663)
|+++|+++||++|.++.+++.++|+.+++++++++......+... +.....+.++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~----------------- 591 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQT----------------- 591 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGG-----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEecccc-----------------
Confidence 999999999999999999999999999999999987654332111 1112333332210
Q ss_pred HHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHH
Q 006047 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (663)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g 282 (663)
. .. .....+.....+++++|++|||||||.||||+++|+++.+. ......+ ++++++++++..|++|..+
T Consensus 592 -~-~~--~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~-~~~~~~~-----~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 592 -R-FE--EQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGL-VKHVDYM-----AFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp -G-GG--SCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHH-HSSCCSS-----CCCTTCEEEECSCTTSTHH
T ss_pred -c-cc--cccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHH-HHHHHhc-----CCCCCCEEEEECCccHHHH
Confidence 0 00 01112233457899999999999999999999999999876 3333333 6789999999999998888
Q ss_pred HHHHHHHHHcCcEEEEEcC----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhh
Q 006047 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (663)
Q Consensus 283 ~~~~~~~l~~G~~~v~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (663)
...++.++..|+++++.+. ++..+.+.|+++++|+++++|+++..+......
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~------------------------ 717 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGED------------------------ 717 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSH------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchh------------------------
Confidence 7778889999999999874 889999999999999999999999987642100
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhc-CCceeecccccccccceeccCCCC---c
Q 006047 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---M 434 (663)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---~ 434 (663)
.+ +++|.+++||++++.++.+.+.+.+ +..+++.||+||++..++...... .
T Consensus 718 ----------------~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 718 ----------------WM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ----------------HH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ----------------cC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 00 3799999999999999988888776 478999999999987665543221 2
Q ss_pred cccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhcccc-------CCceecCcEEEEcC
Q 006047 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGDIGEWQP 507 (663)
Q Consensus 435 ~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~-------~g~~~TGDlg~~~~ 507 (663)
....++|+|+++++++|+| +++. +++.|+.|||+|+|+.+++||+++|+.|++.|. ++||||||+|++++
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~--~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~~ 850 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQ--LQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWLP 850 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSC--BCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEECT
T ss_pred CCCCCCceeeCCCEEEEEC-CCcC--CCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEcC
Confidence 2346899999999999999 6654 556779999999999999999999999999882 34999999999999
Q ss_pred CCcEEEeeeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEecChHHHHHHHHHcCCCCChhh
Q 006047 508 DGSLKIIDRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF---ESFLVAIVNPNKDALERWAAENGVNGDFKS 584 (663)
Q Consensus 508 ~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~ 584 (663)
||.|+++||.||+||+ +|++|.|.|||++|.+||+|++|+|++.++ +..++|+|++....
T Consensus 851 dG~l~~~GR~d~qvki-~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~~~---------------- 913 (1304)
T 2vsq_A 851 DGTIEYAGRIDDQVKI-RGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRTQL---------------- 913 (1304)
T ss_dssp TSCEEEEEEGGGEEEE-TTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSSSS----------------
T ss_pred CCeEEEEcCCCCEEEE-CCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCCCC----------------
Confidence 9999999999999998 799999999999999999999999998654 36899999876421
Q ss_pred hhcChHHHHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchHHHHHH
Q 006047 585 LCENPKAKEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRPQLLKH 645 (663)
Q Consensus 585 ~~~~~~~~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~ 645 (663)
. .++|+++++ ..||.|++|..|++++.. |+|++||++|++|.+.
T Consensus 914 --~--------~~~l~~~l~-~~Lp~ymvP~~~~~l~~l------P~t~~GKidR~~L~~~ 957 (1304)
T 2vsq_A 914 --S--------AEDVKAHLK-KQLPAYMVPQTFTFLDEL------PLTTNGKVNKRLLPKP 957 (1304)
T ss_dssp --C--------HHHHHHHHH-HHSCGGGSCSEEEEESCC------CCCSSCSSCCSCCCCC
T ss_pred --C--------HHHHHHHHH-HhChHhhhccEEEEeccc------CCCCCcccCHhhcCCc
Confidence 1 133455555 689999999999999766 8999999999988543
No 31
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=2e-55 Score=482.05 Aligned_cols=403 Identities=17% Similarity=0.210 Sum_probs=315.7
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhHHH
Q 006047 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (663)
Q Consensus 40 ~~~~~~l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (663)
....+++.++|.++++++||++|+++....++..++.+++||+||.++++++|++|++.|+ +||+|+|+++|+++++++
T Consensus 20 ~~~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~ 98 (480)
T 3t5a_A 20 HMSVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVA 98 (480)
T ss_dssp ----CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHH
T ss_pred CCCcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHH
Confidence 3446899999999999999999999872111334456889999999999999999999996 999999999999999999
Q ss_pred HHHHHhcCCeEeeccC---CCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCC-CCcEEEEecCCChhhHHHHhhc
Q 006047 120 MEACNALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE-HLKTIVSFSKVKPEQREEIEKY 195 (663)
Q Consensus 120 ~lA~~~~G~v~v~l~~---~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~-~~~~ii~~~~~~~~~~~~~~~~ 195 (663)
+|||+++|++++|+++ .++.+++.++|+.++++++|++......+......... ....++.++.
T Consensus 99 ~lA~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 166 (480)
T 3t5a_A 99 FLGALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDL------------ 166 (480)
T ss_dssp HHHHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGG------------
T ss_pred HHHHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecc------------
Confidence 9999999999999999 78899999999999999999999888776665432211 1112222211
Q ss_pred CcEEEeHHHHHhcccccCCCCCCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCC------Cc
Q 006047 196 GLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS------ED 269 (663)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~------~d 269 (663)
+.. ............++++++++|||||||.||||++||+++++.+......+ .... ++
T Consensus 167 ---------~~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d 231 (480)
T 3t5a_A 167 ---------LDL-DAPNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNS 231 (480)
T ss_dssp ---------SCT-TCC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTE
T ss_pred ---------ccc-ccccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCC
Confidence 111 11112233456788999999999999999999999999999988877766 5555 99
Q ss_pred EEEEcCChhhHHHHHH-HHHHHHcCcEEEEEcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhH
Q 006047 270 VYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLK 343 (663)
Q Consensus 270 ~~~~~~p~~~~~g~~~-~~~~l~~G~~~v~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~ 343 (663)
++++++|++|.+|+.. ++.+++.|+++++.+. ++..+++.++++++| +..+|+++..++......
T Consensus 232 ~~l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~-------- 302 (480)
T 3t5a_A 232 ALVSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD-------- 302 (480)
T ss_dssp EEEECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT--------
T ss_pred eEEEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc--------
Confidence 9999999999999865 7888999999999863 899999999999999 889999888876532110
Q ss_pred HHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcC------Cceeecc
Q 006047 344 KTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGY 417 (663)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~------~~v~~~y 417 (663)
+. .....+++||.+++||+++++++.+++++.++ +.+++.|
T Consensus 303 -------------------------~~--------~~~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~Y 349 (480)
T 3t5a_A 303 -------------------------DD--------MAGRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSY 349 (480)
T ss_dssp -------------------------GG--------GTTCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEE
T ss_pred -------------------------cc--------ccccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccc
Confidence 00 01112268999999999999999999998874 4799999
Q ss_pred cccccccceeccCCCC------------------------ccccCccCccccCeEEEEeecCCCccccCCCCCCCeEEEc
Q 006047 418 GLTETCAGTFVSLPNE------------------------MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK 473 (663)
Q Consensus 418 G~tE~~~~~~~~~~~~------------------------~~~~~~~G~p~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~ 473 (663)
|+||++..++...... .....++|+|++ ++++|+| +++ ..+++.|+.|||+|+
T Consensus 350 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~-g~~~~~g~~GEl~v~ 426 (480)
T 3t5a_A 350 WLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDT-CIECPDGTVGEIWVH 426 (480)
T ss_dssp EETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTT-TEECCTTBCEEEEEE
T ss_pred cccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCC-CcCCCCCCEEEEEEe
Confidence 9999998777655432 122468999999 9999999 442 245567899999999
Q ss_pred cCcccccccCChhhhhccc------------cCCceecCcEEEEcCCCcEEEeee
Q 006047 474 GSTVFSGYYKREDLTKEVM------------VDGWFHTGDIGEWQPDGSLKIIDR 516 (663)
Q Consensus 474 g~~~~~gy~~~~~~~~~~~------------~~g~~~TGDlg~~~~~G~l~~~GR 516 (663)
|++++.||+++++.|++.| .+|||+|||+|+++ ||+|+++||
T Consensus 427 g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR 480 (480)
T 3t5a_A 427 GDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR 480 (480)
T ss_dssp STTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred CCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence 9999999999999999988 35699999999997 999999998
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=100.00 E-value=1.6e-48 Score=408.67 Aligned_cols=314 Identities=16% Similarity=0.160 Sum_probs=258.7
Q ss_pred CCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEc
Q 006047 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (663)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 300 (663)
.++++||+|||||||.||||++||+++.+.+......+ +++++|++++++|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 47899999999999999999999999999999888877 8899999999999999999988888999999998876
Q ss_pred CCHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHHhHHHHH
Q 006047 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380 (663)
Q Consensus 301 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (663)
. ....++.++++++|+++++|+++..+++....
T Consensus 111 ~-~~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~---------------------------------------------- 143 (358)
T 4gs5_A 111 P-TANPLAGLDHADFDFVAMVPMQLQSILENSAT---------------------------------------------- 143 (358)
T ss_dssp C-CSCTTTTCSSCCCSEEEECHHHHHHHHHCTTT----------------------------------------------
T ss_pred c-cccHHHHHHHhCCeEEEcChHHHHHhhccccc----------------------------------------------
Confidence 4 23446789999999999999999988652110
Q ss_pred HHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccceeccCCCCccccCccCccccCeEEEEeecCCCccc
Q 006047 381 QSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460 (663)
Q Consensus 381 ~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~iv~~~~~~~~ 460 (663)
...++++|.+++||+++++++.+++++ +++++++.||+||++..+.......... +++|.+.|++++.+.+
T Consensus 144 ~~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~~-g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 144 SGQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPEA-SELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp GGGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTTC-CSCEEECTTCEEEECT-------
T ss_pred cccCCcceEEEEcccCCCchheecccc-cCceEEeccccccccceeeccccccccc-ceeeccCCCeEEEecC-------
Confidence 001157999999999999999999986 5999999999999988777665544433 7889999999887744
Q ss_pred cCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCCcEEEeeeccceeecCCCceeccHHHHHHH--
Q 006047 461 ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDGSLKIIDRKKNIFKLSQGEYVAVENLENIY-- 538 (663)
Q Consensus 461 ~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G~l~~~GR~~d~i~i~~G~~v~~~~IE~~l-- 538 (663)
.|||+++|+.. .+|||+|||+|++|++| ++++||.||+|++ +|++|+|.|||++|
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~-~G~~v~p~eIE~~l~~ 271 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIHGNA-FQWIGRADNVINS-GGVKIVLDQIDQRIAA 271 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEECSSE-EEEEEEGGGEEEE-TTEEEEHHHHHHHHHH
T ss_pred ------cCceEEecccc---------------cCcceecCCccccccCc-eEEcccccCeEEE-CCEEECHHHHHHHHHH
Confidence 69999998632 36899999999999888 6777999999996 89999999999877
Q ss_pred -hcCcCcceEEEE-eeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHHHcCCCCccc
Q 006047 539 -ALVSAIDSVWVY-GNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAKEKKLKGFEF 613 (663)
Q Consensus 539 -~~~~~V~~~~v~-~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~~~~~ 613 (663)
.+||+|.+|+|+ +.+++ +.++|+|+..... . ..++|+++++ .+|+.|++
T Consensus 272 ~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~~---------------------~----~~~~l~~~l~-~~L~~~~~ 325 (358)
T 4gs5_A 272 VFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMPE---------------------A----LTERLTAEIR-SRVSTYEN 325 (358)
T ss_dssp HHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCCH---------------------H----HHHHHHHHHH-HHSCGGGS
T ss_pred hccCCCccEEEEEEecCCccCCEEEEEEEECCCCC---------------------c----CHHHHHHHHH-hhCCCCCC
Confidence 468999998876 44443 5788888876532 1 2234555665 67999999
Q ss_pred eeEEEEccCCCCCCCCccCcccccchHHHHHHHHHHH
Q 006047 614 IKAVHLEPVPFDIERDLLTPTYKKKRPQLLKHYQVTF 650 (663)
Q Consensus 614 p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~~~~~~~~ 650 (663)
|++|++++.. |+|++|||+|++|++++++..
T Consensus 326 P~~i~~v~~l------P~t~~GKi~R~~L~~~l~e~~ 356 (358)
T 4gs5_A 326 PKHIYFAKAF------AKTQTDKIDKRATFQKLSDSS 356 (358)
T ss_dssp CSCEEEESSC------CBCTTSCBCHHHHHHHTC---
T ss_pred ceEEEEECCc------CCCCCCChhHHHHHHHhhhhc
Confidence 9999999765 899999999999999887643
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=100.00 E-value=2.9e-42 Score=372.40 Aligned_cols=332 Identities=16% Similarity=0.114 Sum_probs=250.3
Q ss_pred CCCC-CCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH-HHHHHHHHcCcE
Q 006047 218 VKKK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAA 295 (663)
Q Consensus 218 ~~~~-~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~ 295 (663)
..++ +++++++|||||||.||+|.+||+++.+....+...+.. .++.++|++++.+|+.|..+. ...+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCLYM--VGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHHHH--TTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHHHH--cCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 4455 899999999999999999999999998877665443311 267899999999998654444 457778999999
Q ss_pred EEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHH
Q 006047 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (663)
Q Consensus 296 ~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (663)
+++.+. ++..+++.|+++++|+++++|+++..+++.+.......
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~----------------------------------- 203 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDP----------------------------------- 203 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCT-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988765 89999999999999999999999999987654321110
Q ss_pred hHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccc-eeccCCCCccccCccCccccCeEEEEee
Q 006047 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLES 453 (663)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~p~~~~~v~iv~ 453 (663)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +...... ....|.|.+++.++|+|
T Consensus 204 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~----~~g~~~~~~~~~v~i~d 271 (436)
T 3qov_A 204 --------RETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE----QNGMHFWEDCYLVEIID 271 (436)
T ss_dssp --------TSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT----CSSEEECTTTEEEEEEC
T ss_pred --------ccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC----CCeeEEccCceEEEEEE
Confidence 0158999999999999999999999999999999999999654 3322211 12356777899999999
Q ss_pred cCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCCC------c---EEEeeeccceeecC
Q 006047 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPDG------S---LKIIDRKKNIFKLS 524 (663)
Q Consensus 454 ~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~G------~---l~~~GR~~d~i~i~ 524 (663)
.+++ .+++.|+.|||+|+|. +.+.|.++||+|||+|+++++| + +++.||.+|+|++
T Consensus 272 ~~~g--~~~~~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~~~gc~cG~~~~~il~i~GR~dd~ik~- 336 (436)
T 3qov_A 272 PETG--EPVPEGEIGELVLTTL------------DREMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFII- 336 (436)
T ss_dssp TTTC--SBCSTTCCEEEEEEES------------SCCSSCCCSEEEEEEECEECSCCTTCCCSCEECCCCCBSSSCEEE-
T ss_pred CCCC--CCCCCCCceEEEEecc------------CcCCceEEEEEcCCEEEEcCCCCCCCCCccccCcccCccCCEEEE-
Confidence 4444 4556789999999984 2344568999999999999998 5 6999999999997
Q ss_pred CCceeccHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHH
Q 006047 525 QGEYVAVENLENIYALVSAIDSVWVYGNSF---ESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSR 601 (663)
Q Consensus 525 ~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 601 (663)
+|++|+|.+||++|.+||+|.+++|++..+ .+.++|+|+++ +.. ..+....+.+.+.+++
T Consensus 337 ~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~----------------~~~~~~~~~l~~~l~~ 399 (436)
T 3qov_A 337 KGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLS----------------TDNYIELEKIRRDIIR 399 (436)
T ss_dssp TTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTC----------------CCCHHHHHHHHHHHHH
T ss_pred CCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-Ccc----------------ccchhhHHHHHHHHHH
Confidence 899999999999999999999999988654 46899999988 420 0111223344444444
Q ss_pred HHHHcCCCCc-cceeEEEEccCCCCCCCCccCcccccchH
Q 006047 602 VAKEKKLKGF-EFIKAVHLEPVPFDIERDLLTPTYKKKRP 640 (663)
Q Consensus 602 ~~~~~~l~~~-~~p~~i~~~~~~~~~~~~p~t~~GKv~R~ 640 (663)
.+. .+ ..|..|.+++. +.+|+|+ ||++|.
T Consensus 400 ~l~-----~~~~~p~~i~~v~~----~~lP~t~-GKi~R~ 429 (436)
T 3qov_A 400 QLK-----DEILVTPKVKLVKK----GSLPQSE-GKAVRV 429 (436)
T ss_dssp HHH-----HHHSSCCEEEEECT----TCCC--------CE
T ss_pred HHH-----HhcCCceEEEEeCC----CcccCcC-CcceEE
Confidence 333 34 56777888751 1338999 999985
No 34
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=100.00 E-value=3.2e-42 Score=372.87 Aligned_cols=338 Identities=16% Similarity=0.120 Sum_probs=257.5
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh-hhHHHHHHHHHHHHcCcE
Q 006047 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAA 295 (663)
Q Consensus 217 ~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~ 295 (663)
....++++++++|||||||.||+|++||+++......+...+.. .++.++|++++.+|+ +|..++...+.++..|++
T Consensus 87 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~ 164 (443)
T 2y4o_A 87 FAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSIRA--AGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCM 164 (443)
T ss_dssp CSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCE
T ss_pred cCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEeccCcccccHHHHHHHHHHcCCE
Confidence 34567899999999999999999999999998876655442211 267899999999998 577777777888999999
Q ss_pred EEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHH
Q 006047 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (663)
Q Consensus 296 ~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (663)
+++.+. ++..+++.|+++++|+++++|+++..|++.+.......
T Consensus 165 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------------------------- 209 (443)
T 2y4o_A 165 VVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP----------------------------------- 209 (443)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------
T ss_pred EEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 988765 99999999999999999999999999877543321000
Q ss_pred hHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccc-eeccCCCCccccCccCccccCeEEEEee
Q 006047 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLES 453 (663)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~p~~~~~v~iv~ 453 (663)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........ ...+.|.+++.++|+|
T Consensus 210 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d 278 (443)
T 2y4o_A 210 --------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVETK---DGPVIWEDHFYPEIID 278 (443)
T ss_dssp --------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTTC---CSEEECTTTEEEEEEC
T ss_pred --------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCCC---CceEEccCCeEEEEEc
Confidence 0157999999999999999999998889999999999998442 322221111 1244566899999999
Q ss_pred cCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCC-CcE-----EEeeeccceeecCCCc
Q 006047 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD-GSL-----KIIDRKKNIFKLSQGE 527 (663)
Q Consensus 454 ~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~-G~l-----~~~GR~~d~i~i~~G~ 527 (663)
.+++ .+++.|+.|||+|+|. +.+.|.++||+|||+|+++++ |++ ++.||.+|+|++ +|+
T Consensus 279 ~~~g--~~~~~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~~~cG~~~~~l~~i~GR~~d~i~~-~G~ 343 (443)
T 2y4o_A 279 PVTG--EVLPDGSQGELVFTSL------------TKEAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIV-RGV 343 (443)
T ss_dssp TTTC--CBCCTTCCEEEEEEES------------SCSSSCCSSEEEEEEECEECCSSSSSCEECCCCEESSCCEEE-TTE
T ss_pred CCCC--CCCCCCCceEEEEeCC------------CcccChhheeecCCEEEEcCCCCCCccccCccccccCCeEEE-CCE
Confidence 3334 4556789999999983 234456789999999999999 987 899999999997 799
Q ss_pred eeccHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEecCh--HHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHH
Q 006047 528 YVAVENLENIYALVSAIDSVWVYGNSF---ESFLVAIVNPNK--DALERWAAENGVNGDFKSLCENPKAKEFILGELSRV 602 (663)
Q Consensus 528 ~v~~~~IE~~l~~~~~V~~~~v~~~~~---~~~~~a~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 602 (663)
+|+|.+||++|.+||+|.++++++.++ .+.++++|++.+ +. . ......+.+.+.+++
T Consensus 344 ~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~----------~-------~~~~~~~~l~~~l~~- 405 (443)
T 2y4o_A 344 NVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAA----------S-------VTDGERAALARELQH- 405 (443)
T ss_dssp EECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHT----------T-------CCHHHHHHHHHHHHH-
T ss_pred EECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccc----------c-------chhhHHHHHHHHHHH-
Confidence 999999999999999999999887532 368899999876 21 0 011122334444443
Q ss_pred HHHcCCCCc-cceeEEEEccCCCCCCCCccCcccccchHHHH
Q 006047 603 AKEKKLKGF-EFIKAVHLEPVPFDIERDLLTPTYKKKRPQLL 643 (663)
Q Consensus 603 ~~~~~l~~~-~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~l~ 643 (663)
.|+.+ ..|..|.+++ ++.+|+|++||++|+..+
T Consensus 406 ----~l~~~~~~p~~v~~v~----~~~lP~t~~GKi~r~~~~ 439 (443)
T 2y4o_A 406 ----RIKTMVGVSSGVTVLA----AGGIPATATGKARRVIDR 439 (443)
T ss_dssp ----HHHHHTCCCCEEEEEC----TTCSCCCTTSCCCSEEEC
T ss_pred ----HHHHHhCCceEEEEeC----CCcccCccCCcceEEEec
Confidence 33344 4677777773 123389999999997543
No 35
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=100.00 E-value=1.2e-41 Score=367.67 Aligned_cols=335 Identities=17% Similarity=0.142 Sum_probs=256.5
Q ss_pred CCCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh-hhHHHHHHHHHHHHcCcE
Q 006047 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAA 295 (663)
Q Consensus 217 ~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~ 295 (663)
...+++++++++|||||||.||+|++||+++......+...+.. .++.++|++++.+|+ +|..++...+.++..|++
T Consensus 85 ~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~ 162 (437)
T 2y27_A 85 FAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSIRA--AGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLT 162 (437)
T ss_dssp CSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHHHH--TTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCE
T ss_pred ccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHHHH--cCCCCCCEEEEcccccccccchHHHHHHHHcCCE
Confidence 34567899999999999999999999999998776654432211 267899999999998 688887778888999999
Q ss_pred EEEEcC-CHHHHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHhhHhhhhcCCCCCCcchhhHHH
Q 006047 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (663)
Q Consensus 296 ~v~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (663)
+++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 163 ~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------------------------- 207 (437)
T 2y27_A 163 VIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP----------------------------------- 207 (437)
T ss_dssp EECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc-----------------------------------
Confidence 987765 99999999999999999999999999887543321000
Q ss_pred hHHHHHHHcCCceEEEEecCCCCcHHHHHHHHHhcCCceeecccccccccc-eeccCCCCccccCccCccccCeEEEEee
Q 006047 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPVPNVDVCLES 453 (663)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~~~~~G~p~~~~~v~iv~ 453 (663)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +........ ...+.|.+++.++|+|
T Consensus 208 --------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~---~g~~~~~~~~~~~i~d 276 (437)
T 2y27_A 208 --------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK---DGPTIWEDHFYPEIID 276 (437)
T ss_dssp --------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC---SSCEECTTTEEEEEEC
T ss_pred --------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC---CceeEccCceEEEEEc
Confidence 0157999999999999999999998889999999999998432 332222111 1245567899999999
Q ss_pred cCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcC-CCcE-----EEeeeccceeecCCCc
Q 006047 454 VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP-DGSL-----KIIDRKKNIFKLSQGE 527 (663)
Q Consensus 454 ~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~-~G~l-----~~~GR~~d~i~i~~G~ 527 (663)
++. ..+++.|+.|||+|+|. +.+.|.++||+|||+|++++ +|++ ++.||.+|+|++ +|+
T Consensus 277 -~~~-g~~~~~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~~~~G~~~~~i~~i~GR~~d~i~~-~G~ 341 (437)
T 2y27_A 277 -PET-GEVLPDGELGELVFTSL------------TKEALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIV-RGV 341 (437)
T ss_dssp -TTT-CCBCCTTCCEEEEEEES------------SCSSSCCCSEEEEEEECEECCSSSSSCEECCCCEEGGGCEEE-TTE
T ss_pred -CCC-CCCCCCCCccEEEEecC------------CcCCchhheeecCCEEEEeCCCCCCccccCccccccCCeEEE-CCe
Confidence 432 24566789999999983 33445689999999999998 6985 899999999997 899
Q ss_pred eeccHHHHHHHhcCcCcceEEEEeeC---CCCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHHHHHHHHHHHHHHH
Q 006047 528 YVAVENLENIYALVSAIDSVWVYGNS---FESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKAKEFILGELSRVAK 604 (663)
Q Consensus 528 ~v~~~~IE~~l~~~~~V~~~~v~~~~---~~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~ 604 (663)
+|+|.+||++|.+||+|.++++++.+ ..+.++|+|++.++.. ......+.+.+.+++
T Consensus 342 ~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~-----------------~~~~~~~~l~~~l~~--- 401 (437)
T 2y27_A 342 NVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETA-----------------PDTAAIQVAKQALAY--- 401 (437)
T ss_dssp EECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTT-----------------TCHHHHHHHHHHHHH---
T ss_pred EECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCcc-----------------chhhhHHHHHHHHHH---
Confidence 99999999999999999998888753 2468999999876420 011122334444433
Q ss_pred HcCCCCc-cceeEEEEccCCCCCCCCccCcccccchHH
Q 006047 605 EKKLKGF-EFIKAVHLEPVPFDIERDLLTPTYKKKRPQ 641 (663)
Q Consensus 605 ~~~l~~~-~~p~~i~~~~~~~~~~~~p~t~~GKv~R~~ 641 (663)
.|+.+ ..|..|.+++ .+.+|+|+ ||++|+.
T Consensus 402 --~l~~~~~~p~~v~~v~----~~~lP~t~-GKi~r~~ 432 (437)
T 2y27_A 402 --DIKSLIGVTAVINVLP----VNGIERSV-GKARRVV 432 (437)
T ss_dssp --HHHHHHCCCEEEEECC----TTCSCCCS-SSCCCEE
T ss_pred --HHHHhcCCceEEEEeC----CCCccCCC-CcceEEE
Confidence 34455 4777888773 12348999 9999964
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.94 E-value=1.5e-26 Score=243.59 Aligned_cols=238 Identities=15% Similarity=0.109 Sum_probs=173.2
Q ss_pred CCCCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCCh-hhHHHHHHHHHHHHcCcEE
Q 006047 218 VKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAAI 296 (663)
Q Consensus 218 ~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~-~~~~g~~~~~~~l~~G~~~ 296 (663)
..+++++++++|||||||.||+|.++|+++.+....+...+. ..++.++|++++.+|+ +|..++...+.++..|+.+
T Consensus 87 ~~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~~~--~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v 164 (369)
T 3hgu_A 87 GLPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSGYQ--HRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMF 164 (369)
T ss_dssp TSCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTTTT--TSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCE
T ss_pred cCCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhhHH--hhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEE
Confidence 347789999999999999999999999999998885543321 1267899999999999 9999998877779999943
Q ss_pred EEEcCCHH-----------------------HHHHHhhhcCCcEEEeCcHHHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006047 297 GFWRGDVK-----------------------LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (663)
Q Consensus 297 v~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (663)
+....++. .+++.|+++++|+++++|+++..|++...
T Consensus 165 ~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~-------------------- 224 (369)
T 3hgu_A 165 FSIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE-------------------- 224 (369)
T ss_dssp ECCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH--------------------
T ss_pred ECccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh--------------------
Confidence 33333666 77889999999999999999999865311
Q ss_pred hHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCceEEEEecCCCCcHHHHHHHH-Hhc-CCceeecccccccccceeccCC
Q 006047 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR-VVA-CAHVLQGYGLTETCAGTFVSLP 431 (663)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~gG~~l~~~~~~~~~-~~~-~~~v~~~yG~tE~~~~~~~~~~ 431 (663)
.....+ +++|.+++||+++++++.+.++ +.+ ++++++.||+||+++++..+..
T Consensus 225 -----------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~ 279 (369)
T 3hgu_A 225 -----------------VVLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI 279 (369)
T ss_dssp -----------------HHHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB
T ss_pred -----------------hhcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc
Confidence 011111 4799999999999999999999 888 8999999999999876543321
Q ss_pred CCccccCccCcc------ccCeEEEEeecCCCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEE
Q 006047 432 NEMSMIGTVGPP------VPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEW 505 (663)
Q Consensus 432 ~~~~~~~~~G~p------~~~~~v~iv~~~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~ 505 (663)
.++|.| +++++++|+|.+++ .+++.|+.|||+|++....... -+|+|||++..
T Consensus 280 ------~~~G~~~~~~~~~~~~~v~ivD~~~g--~~vp~G~~GEl~vt~l~~~~~l-------------~ry~tgD~~~~ 338 (369)
T 3hgu_A 280 ------TSESQQVIYDSFSPFITYDVVDSITA--QTVEYGERGNVIVTHLSPWAFY-------------PRVAERDTAIR 338 (369)
T ss_dssp ------CTTCSSCEEECCTTTEEEEEECTTTC--SBCCTTCEEEEEEEEEETTEEE-------------EEEEEEEEEEE
T ss_pred ------ccCCCcccccCCCCCeEEEEECCCCC--cCCCCCCceEEEEEEcCccccc-------------ccccCCceEEE
Confidence 148888 99999999993254 4566789999999984321111 23889999887
Q ss_pred cCC--C-------cEEEeeeccceeec
Q 006047 506 QPD--G-------SLKIIDRKKNIFKL 523 (663)
Q Consensus 506 ~~~--G-------~l~~~GR~~d~i~i 523 (663)
.+. | .+..++|.++..+|
T Consensus 339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i 365 (369)
T 3hgu_A 339 LPGVSGFAGDRLADIEPLKISEGRKVI 365 (369)
T ss_dssp ECCSTTCSSCEEEEEEECC--------
T ss_pred ecCCCCCcCcccccceeccccCCCcee
Confidence 543 2 24455666666655
No 37
>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}
Probab=99.21 E-value=3.1e-11 Score=102.26 Aligned_cols=98 Identities=14% Similarity=0.113 Sum_probs=65.8
Q ss_pred eeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCCC---CeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHH
Q 006047 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSFE---SFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKA 591 (663)
Q Consensus 515 GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~~---~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (663)
.|.||+|++ +|.||+|.+||++|.+||+|.++++++.+++ +.+.++|+..++. ......
T Consensus 1 srADDmIiv-~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~-----------------~~~~~~ 62 (109)
T 3lax_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLF-----------------TDDYGR 62 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTC-----------------CCCHHH
T ss_pred CCcCEEEEE-CCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeecc-----------------ccccch
Confidence 489999998 8999999999999999999999998886543 5788888877642 023333
Q ss_pred HHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccch
Q 006047 592 KEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKR 639 (663)
Q Consensus 592 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R 639 (663)
.+.+.+.|++.++. .+ ..+..+.+++ .+++|+| +||++|
T Consensus 63 ~~~l~~~i~~~l~~-~~---gv~~~v~~v~----~~~lPrt-sGKi~R 101 (109)
T 3lax_A 63 LQALTREITRQLKD-EI---LVTPRVKLVP----KGALPKS-EGKAVR 101 (109)
T ss_dssp HHHHHHHHHHHHHH-HH---SSCCEEEEEC----TTCSCCC----CCC
T ss_pred hhhhHHHHHHHHHH-Hh---CCccceEEEc----CCeecCC-CCCcch
Confidence 44555555554442 11 1233566663 1445898 799988
No 38
>3gxs_A Phenylacetate-coenzyme A ligase; APC62324.1, structural genomics, PSI-2, protein structure initiative; 1.43A {Bacteroides vulgatus atcc 8482} PDB: 3lax_A
Probab=99.06 E-value=3.2e-10 Score=95.75 Aligned_cols=99 Identities=14% Similarity=0.132 Sum_probs=62.7
Q ss_pred eeccceeecCCCceeccHHHHHHHhcCcCcceEEEEeeCC---CCeEEEEEecChHHHHHHHHHcCCCCChhhhhcChHH
Q 006047 515 DRKKNIFKLSQGEYVAVENLENIYALVSAIDSVWVYGNSF---ESFLVAIVNPNKDALERWAAENGVNGDFKSLCENPKA 591 (663)
Q Consensus 515 GR~~d~i~i~~G~~v~~~~IE~~l~~~~~V~~~~v~~~~~---~~~~~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 591 (663)
||.+|+|++ +|.+|+|.+||++|.+||+|.++++++.++ .+.++++|++ ++.. . .....
T Consensus 1 GR~~D~Iiv-~G~nv~P~eIE~~l~~~p~v~~~~~v~v~~~~~~e~l~~~ve~-~~~~---------~-------~~~~~ 62 (109)
T 3gxs_A 1 SNADDMIIL-KGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVEL-SQLF---------T-------DDYGR 62 (109)
T ss_dssp CGGGSCEEE-TTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEE-CTTC---------C-------CCHHH
T ss_pred CCccCEEEE-CCEEECHHHHHHHHHhCCCcCCcEEEEEEcCCCceEEEEEEEE-cCcc---------c-------cchhH
Confidence 799999997 899999999999999999999887776443 3678888887 4210 0 01122
Q ss_pred HHHHHHHHHHHHHHcCCCCccceeEEEEccCCCCCCCCccCcccccchH
Q 006047 592 KEFILGELSRVAKEKKLKGFEFIKAVHLEPVPFDIERDLLTPTYKKKRP 640 (663)
Q Consensus 592 ~~~i~~~l~~~~~~~~l~~~~~p~~i~~~~~~~~~~~~p~t~~GKv~R~ 640 (663)
.+.+.+.|++.+.+ .+ ..+..|.+++. +.+|+| +||++|.
T Consensus 63 ~~~l~~~i~~~l~~-~~---~~~~~v~~v~~----~~lPrt-sGKi~R~ 102 (109)
T 3gxs_A 63 LQALTREITRQLKD-EI---LVTPRVKLVPK----GALPKS-EGKAVRV 102 (109)
T ss_dssp HHHHHHHHHHHHHH-HH---SSCCEEEEECT----TCSCCC----CCCE
T ss_pred HHHHHHHHHHHHHH-hh---CCceEEEEECC----CCccCC-CCceEEE
Confidence 33444444444431 11 11226777741 234899 9999884
No 39
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=98.78 E-value=2e-07 Score=100.91 Aligned_cols=132 Identities=16% Similarity=0.177 Sum_probs=82.7
Q ss_pred eEEEEecCCCCcHHHHHHHHHhc-CCcee-ecccccccccceeccCCCCccccCccCc-cccC-eEEEEeecCC------
Q 006047 387 VRLILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGP-PVPN-VDVCLESVPE------ 456 (663)
Q Consensus 387 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~iv~~~~------ 456 (663)
+.++..||. ......++..+ +.++. ..|++||+. +.....+... +...+. .+++ .-...++.++
T Consensus 302 l~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~--~~~~~~~L~~~~~ffEFip~~~~~~~~~ 375 (581)
T 4eql_A 302 IETVVTGSM---GQYVPMLNYYCNDLPLVSTTYGSSETT-FGINLDPLCK--PEDVSYTFMPNMSYFEFIPMDGGDKNDV 375 (581)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTTCCEECCEEECSSCE-EEECSCTTSC--GGGCCEEECTTSSEEEEEECSTTCCSSC
T ss_pred EEEEcCCCh---HHHHHHHHHHcCCCccccCccccccce-eeeccCCCCC--cccCceeecCCcEEEEEEeccccCCCcE
Confidence 767777773 33445555544 67777 899999963 2222211110 011121 1222 1222232111
Q ss_pred CccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcC----CCcEEEeeeccceeecCCCceeccH
Q 006047 457 MEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP----DGSLKIIDRKKNIFKLSQGEYVAVE 532 (663)
Q Consensus 457 ~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~i~i~~G~~v~~~ 532 (663)
-....+..|+.+||.++.. .|.|+ ||+||+.++.. ..++.|.||.++++.+ .|+++++.
T Consensus 376 v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~-~Gekl~~~ 438 (581)
T 4eql_A 376 VDLEDVKLGCTYEPVVTNF---AGLYR-------------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSI-DSDKTNEE 438 (581)
T ss_dssp EEGGGCCTTCEEEEEEECS---SSCCS-------------EECCEEEEEEEEETTEEEEEEEEETTEEECS-SSCCEEHH
T ss_pred eCHHHcCCCceEEEEEeec---cceee-------------EEcCCEEEEcccCCCCcEEEEEEecCCEEEe-eeeECCHH
Confidence 1123455778999999875 34444 99999999875 3579999999999997 79999999
Q ss_pred HHHHHHhcC
Q 006047 533 NLENIYALV 541 (663)
Q Consensus 533 ~IE~~l~~~ 541 (663)
+||++|.+.
T Consensus 439 ~v~~al~~a 447 (581)
T 4eql_A 439 DLFKAVSQA 447 (581)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999999643
No 40
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=98.71 E-value=3.5e-07 Score=99.11 Aligned_cols=155 Identities=13% Similarity=0.136 Sum_probs=92.4
Q ss_pred eEEEEecCCCCcHHHHHHHHHhc-CCcee-ecccccccccceeccCCCCccccCccCc-cccC-eEEEEeecCCC-----
Q 006047 387 VRLILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGP-PVPN-VDVCLESVPEM----- 457 (663)
Q Consensus 387 lr~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~-~~v~iv~~~~~----- 457 (663)
+.++..||. ......++..+ +.+++ ..|++||+. +.....+... +...+. .+|+ .-...++.++.
T Consensus 307 l~~~~tG~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~--p~~~~~~L~p~~~ffEFIP~~~~~~~~~ 380 (609)
T 4b2g_A 307 LDVIVTGAM---AQYIPTLDYYSGGLPLACTMYASSECY-FGLNLNPMSK--PSEVSYTIMPNMAYFEFLPHEHSSIPLS 380 (609)
T ss_dssp EEEECSGGG---GGGHHHHHHHHTSCCEECCEEECSSCE-EEECSCTTSC--GGGCCEEECTTSCEEEEEEGGGTTSCCC
T ss_pred EEEEccCCh---HHHHHHHHHHcCCCccccCccccccee-eeeecCCCCC--cccCceeecCCcEEEEEEeccccccccc
Confidence 556666773 33345555544 66666 899999974 2222211110 011111 2222 12222321111
Q ss_pred -c-------cccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcC----CCcEEEeeeccceeecCC
Q 006047 458 -E-------YDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQP----DGSLKIIDRKKNIFKLSQ 525 (663)
Q Consensus 458 -~-------~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~----~G~l~~~GR~~d~i~i~~ 525 (663)
. ...+..|+.+||.++.. .|.|+ ||+||+++++. ..++.|.||.+++|++ .
T Consensus 381 ~~~~~~~v~l~eVe~G~~YelViTt~---~GL~R-------------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~-~ 443 (609)
T 4b2g_A 381 RDSPPRLVDLAHVEVGKEYELVITTY---AGLYR-------------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSI-D 443 (609)
T ss_dssp SSSCCCCEEGGGCCTTCEEEEEEECT---TSCCS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCccccHhHcCCCCeEEEehhhh---hhhhh-------------eecCCEEEEeecCCCCcEEEEEEecCCeEEc-c
Confidence 0 13455778999999763 46655 99999999873 4689999999999997 8
Q ss_pred CceeccHHHHHHHhc------CcC--cceEEEEeeCC--CCeEEEEEec
Q 006047 526 GEYVAVENLENIYAL------VSA--IDSVWVYGNSF--ESFLVAIVNP 564 (663)
Q Consensus 526 G~~v~~~~IE~~l~~------~~~--V~~~~v~~~~~--~~~~~a~v~~ 564 (663)
|+++++.+||++|.. ..+ |.+..+..... +.+-+.++.+
T Consensus 444 Geki~~~~v~~av~~a~~~l~~~g~~l~eft~~~d~~~~p~Hyv~~wEl 492 (609)
T 4b2g_A 444 SDKTDEAELQKAVDNASKLLREVNTSVVEYTSFADTKTIPGHYVIYWEL 492 (609)
T ss_dssp SCCBCHHHHHHHHHHHHHGGGGTTEEEEEEEEEEECSSSSCEEEEEEEE
T ss_pred ccCCCHHHHHHHHHHHHHhhhccCCeEEEEEEecCCCCCCCcEEEEEEE
Confidence 999999999999953 223 55555544322 2355555544
No 41
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=98.55 E-value=3.7e-06 Score=90.75 Aligned_cols=158 Identities=16% Similarity=0.123 Sum_probs=92.1
Q ss_pred CceE---EEEecCCCCcHHHHHHHHHhc-CCcee-ecccccccccceeccCCCCccccCccCc-cccC---eEEEEeecC
Q 006047 385 GRVR---LILSGAAPLTPHVETFLRVVA-CAHVL-QGYGLTETCAGTFVSLPNEMSMIGTVGP-PVPN---VDVCLESVP 455 (663)
Q Consensus 385 ~~lr---~i~~gG~~l~~~~~~~~~~~~-~~~v~-~~yG~tE~~~~~~~~~~~~~~~~~~~G~-p~~~---~~v~iv~~~ 455 (663)
++++ .+..|+. ......++..+ +.++. ..|++||+. +.....+... ++..+. .+|+ .|..-++..
T Consensus 302 Pnl~~i~~~~~G~~---~~Y~~~l~~~~g~~p~~~~~Y~ASEg~-~gi~~~p~~~--~~~~~~~L~p~~~ffEFiP~~~~ 375 (581)
T 4epl_A 302 PNAKYVYGIMTGSM---EPYVPKLRHYAGDLPLVSHDYGSSEGW-IAANVTPRLS--PEEATFAVIPNLGYFEFLPVSET 375 (581)
T ss_dssp TTCCCEEEECSGGG---GGGHHHHHHHHTTSCEEECCEEETTEE-EEECCCTTSC--TTTCCEEECTTSCEEEEEEC---
T ss_pred CCCceEEEEeCCCh---HHHHHHHHHHcCCCccccCceecccee-eeeecCCCCC--ccccceeecCCcEEEEEEecccc
Confidence 5664 4444433 33345555544 67776 899999963 2222222111 011111 2222 222222200
Q ss_pred ------CCccccCCCCCCCeEEEccCcccccccCChhhhhccccCCceecCcEEEEcCC----CcEEEeeeccceeecCC
Q 006047 456 ------EMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGDIGEWQPD----GSLKIIDRKKNIFKLSQ 525 (663)
Q Consensus 456 ------~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDlg~~~~~----G~l~~~GR~~d~i~i~~ 525 (663)
.-....+..|+.+||.++.. .|.|+ ||+||+.++..- .++.|.||.++++.+ .
T Consensus 376 ~~~~~~~v~l~eve~G~~YelviTt~---~GL~R-------------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~-~ 438 (581)
T 4epl_A 376 GEGEEKPVGLTQVKIGEEYEVVITNY---AGLYR-------------YRLGDVVKVIGFYNNTPQLKFICRRNLILSI-N 438 (581)
T ss_dssp ----CCCEEGGGCCTTCEEEEEEEST---TSCSS-------------EEEEEEEEEEEEETTEEEEEEEEETTCCBCS-S
T ss_pred cCCCCceeeHHHcCCCCeEEEEEeec---cceee-------------EEcCCEEEEecccCCCcEEEEEeecCCeEEe-e
Confidence 01113455778999999874 34444 999999998642 479999999999997 7
Q ss_pred CceeccHHHHHHHhc------CcC--cceEEEEeeCC--CCeEEEEEecC
Q 006047 526 GEYVAVENLENIYAL------VSA--IDSVWVYGNSF--ESFLVAIVNPN 565 (663)
Q Consensus 526 G~~v~~~~IE~~l~~------~~~--V~~~~v~~~~~--~~~~~a~v~~~ 565 (663)
|+++++.+||.++.. ..+ |.|..+..... +.+-+.+..+.
T Consensus 439 Ge~~~~~~v~~al~~a~~~l~~~~~~l~eft~~~d~~~~p~hyv~~wE~~ 488 (581)
T 4epl_A 439 IDKNTERDLQLSVESAAKRLSEEKIEVIDFSSYIDVSTDPGHYAIFWEIS 488 (581)
T ss_dssp SCCBCHHHHHHHHHHHHHHHHTTTCCEEEEEEEEECSSSSCEEEEEEEES
T ss_pred eeECCHHHHHHHHHHHHHhhcccCCeEEEEEEecCCCCCCCcEEEEEeec
Confidence 999999999999953 223 66665555322 24555555543
No 42
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=91.28 E-value=1.1 Score=46.88 Aligned_cols=107 Identities=15% Similarity=0.062 Sum_probs=80.7
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCeEee
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~v~ 132 (663)
.++.++.+... .|.++.. ..+|...+...+..++..+...|+.++|++...++.. ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34666655542 5555533 4679999988888888888888999999999988863 3445567888999999887
Q ss_pred ccCCCChHHHHHHHhhcCccEEEEcCCChhhHhh
Q 006047 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (663)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~ 166 (663)
++. .+.+.+...|+..++.+++........+.+
T Consensus 166 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 198 (437)
T 2y27_A 166 FGG-GQTEKQVQLIQDFRPDIIMVTPSYMLSIAD 198 (437)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCCEEEECHHHHHHHHH
Confidence 755 478899999999999999988766554443
No 43
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=90.70 E-value=1.3 Score=46.47 Aligned_cols=107 Identities=14% Similarity=0.029 Sum_probs=80.9
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCeEee
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~v~ 132 (663)
.++.++++... .|.++.. ..+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34566655442 5666543 4679999988888888888888999999999988863 3445567888899999887
Q ss_pred ccCCCChHHHHHHHhhcCccEEEEcCCChhhHhh
Q 006047 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (663)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~ 166 (663)
++. .+.+.+...|+..++.+++........+.+
T Consensus 168 ~~~-~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 200 (443)
T 2y4o_A 168 MSG-GQTEKQVQLIRDFEPKIILVTPSYMLNLID 200 (443)
T ss_dssp CCS-CCHHHHHHHHHHHCCSEEEECHHHHHHHHH
T ss_pred CCC-CCHHHHHHHHHHhCCcEEEECHHHHHHHHH
Confidence 765 478899999999999999888766554433
No 44
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=90.67 E-value=1.5 Score=45.91 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=89.6
Q ss_pred CCCceEEEeeccCCCCc--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCeEeecc
Q 006047 59 NNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVPLY 134 (663)
Q Consensus 59 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~v~l~ 134 (663)
+.+|++... .|.++. ...+|.+.+...+..++..+...|+.++|++....+-+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 455655442 555553 34679999998888888888888999999999988753 445567788899999988775
Q ss_pred CCCChHHHHHHHhhcCccEEEEcCCChhhHhhcC-----CCcCCCCcEEEEecCC
Q 006047 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKV 184 (663)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~-----~~~~~~~~~ii~~~~~ 184 (663)
. ..++.+...|+..++.+++........+.+.. ......++.++.-+..
T Consensus 164 ~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 A-GNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp S-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred C-CCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 4 47788999999999999998887665554431 1113567777765543
No 45
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=86.68 E-value=6.3 Score=41.84 Aligned_cols=121 Identities=11% Similarity=0.023 Sum_probs=85.6
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch-hhHHHHHHHHhcCCeEeec
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP-EWIIGMEACNALGLHCVPL 133 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~v~l 133 (663)
.|+.+|++... .|.++.. ..+|++.+...+..+. ...++.++|++...+|-.- ..+..+++++..|+..+..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCK---ESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHH---HHTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHH---HhhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46777776653 5555533 4679888877665544 3458999999988887652 2344477888899998877
Q ss_pred cCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecC
Q 006047 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK 183 (663)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~ 183 (663)
+ ..+++.+...++..++.+++........+.+........++.++.-+.
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~ 284 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGA 284 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSS
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCC
Confidence 5 578999999999999999999887777666554433335666665443
No 46
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=80.43 E-value=4.6 Score=40.91 Aligned_cols=104 Identities=11% Similarity=-0.007 Sum_probs=69.9
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc--hhhHHHHHHHHhcCCeEee
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~v~ 132 (663)
.++.++.+... .|.++.. ..+|...+...+..++..+...|+.++|++..+++-+ .--....++++..|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 45666666553 5655543 4678888888877777777778999999999998863 2334445556888996555
Q ss_pred ccCCCChH-----------------------HHHHHHhhcCccEEEEcCCChhhH
Q 006047 133 LYDTLGAG-----------------------AVEFIICHSGVSIAFVEEKKIPEM 164 (663)
Q Consensus 133 l~~~~~~~-----------------------~l~~~l~~~~~~~vl~~~~~~~~~ 164 (663)
.. .++. .+...++..++.+++........+
T Consensus 167 ~~--~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l 219 (369)
T 3hgu_A 167 ID--IDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLREL 219 (369)
T ss_dssp CC--CCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHH
T ss_pred cc--CChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHH
Confidence 43 3344 666688999999988876655444
No 47
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=78.47 E-value=9.1 Score=41.18 Aligned_cols=121 Identities=12% Similarity=-0.047 Sum_probs=81.8
Q ss_pred CCCceEEEeeccCCCCc--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh--hHHHHHHHHhcCCeEeecc
Q 006047 59 NNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE--WIIGMEACNALGLHCVPLY 134 (663)
Q Consensus 59 d~~al~~~~~~d~~~~~--~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~v~l~ 134 (663)
+.+|++... .|.++. -..+|.+.+...+......+...++.++|++...+|-.-. +...+++++ .|+..+.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 667776542 555543 3468999887766555443333588999998888776532 334466777 999988775
Q ss_pred CCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCC---CcCCCCcEEEEecC
Q 006047 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSK 183 (663)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~---~~~~~~~~ii~~~~ 183 (663)
..+++.+...++..++.+++........+.+... .....++.++.-..
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 319 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGA 319 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSS
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCc
Confidence 5788999999999999999988876666554322 12345666665443
No 48
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=76.67 E-value=29 Score=37.06 Aligned_cols=122 Identities=11% Similarity=-0.012 Sum_probs=83.9
Q ss_pred CCCCCceEEEeeccCCCCc--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh--hHH-HHHHHHhcCCeEe
Q 006047 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE--WII-GMEACNALGLHCV 131 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~--~~~-~~lA~~~~G~v~v 131 (663)
.|+.+|++... .|.++. -..+|.+.+...+..+.. ..++.++|++...+|-.-. +.. .+++++..|+..+
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 46777776653 555553 246899888776655443 3478899998888876533 333 5788899999988
Q ss_pred eccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcC---CCcCCCCcEEEEecCC
Q 006047 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTTEHLKTIVSFSKV 184 (663)
Q Consensus 132 ~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~---~~~~~~~~~ii~~~~~ 184 (663)
..+ ..+++.+...++..++.+++........+.+.. .....+++.++.-+..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 764 568899999999999999998877665544321 2233567777665543
No 49
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=73.22 E-value=19 Score=38.11 Aligned_cols=122 Identities=9% Similarity=-0.035 Sum_probs=81.2
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch-hhHHHHHHHHhcCCeEeec
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP-EWIIGMEACNALGLHCVPL 133 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~v~l 133 (663)
.|+.+|++... .|.++.. ..+|++.+...+..+. ...++.++|++...+|-+- -.+..+++++..|+..+.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAV---EDFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHH---HHTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHH---HhcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 35666766553 5655533 4678888876554443 3458899999999888763 3345688889999998887
Q ss_pred cCC--CChHHHHHHHhhcCccEEEEcCCChhhHhhcCC---CcCCCCcEEEEecC
Q 006047 134 YDT--LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSK 183 (663)
Q Consensus 134 ~~~--~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~---~~~~~~~~ii~~~~ 183 (663)
+.. ..++.+...++..++.+++........+..... ...+.++.++.-+.
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~ 271 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGE 271 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSS
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecC
Confidence 653 567889999999999999888766654443321 22345666665544
No 50
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=69.94 E-value=17 Score=39.01 Aligned_cols=122 Identities=10% Similarity=-0.093 Sum_probs=79.6
Q ss_pred CCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch-hhHHHHHHHHhcCCeEeeccC
Q 006047 59 NNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP-EWIIGMEACNALGLHCVPLYD 135 (663)
Q Consensus 59 d~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~v~l~~ 135 (663)
+.+|++... .|.++.. ..+|.+.+...+......+...++.++|++...+|-.- -.+..+++++..|+..+.+ +
T Consensus 190 ~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~-~ 266 (550)
T 3rix_A 190 KTIALIMNS--SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLM-Y 266 (550)
T ss_dssp TSEEEEEEC-------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC-S
T ss_pred CCEEEEEEC--CCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEe-C
Confidence 556665542 5555433 46788888766555444333457889999988887653 2345567788899998876 4
Q ss_pred CCChHHHHHHHhhcCccEEEEcCCChhhHhhcCC---CcCCCCcEEEEecC
Q 006047 136 TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSK 183 (663)
Q Consensus 136 ~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~---~~~~~~~~ii~~~~ 183 (663)
...++.+...++..++.+++........+..... ....+++.++.-+.
T Consensus 267 ~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~ 317 (550)
T 3rix_A 267 RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGA 317 (550)
T ss_dssp SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSS
T ss_pred CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecC
Confidence 5788999999999999999988776665554321 12356666665544
No 51
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=69.79 E-value=22 Score=37.75 Aligned_cols=101 Identities=15% Similarity=0.039 Sum_probs=69.5
Q ss_pred CCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh--hHHHHHHHHhcCCeEeec
Q 006047 58 PNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE--WIIGMEACNALGLHCVPL 133 (663)
Q Consensus 58 Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~v~v~l 133 (663)
|+.+|++... .|.++.. ..+|.+.+...+..++. ..++.++|++...+|-.-. +...+++++ .|+..+..
T Consensus 169 ~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~~ 242 (517)
T 3r44_A 169 GDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAS---TIDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLISM 242 (517)
T ss_dssp TTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHH---HSCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEEC
T ss_pred CCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHH---hcCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEEe
Confidence 5666666553 5655543 46899888776655544 3489999999988887533 233355555 88888766
Q ss_pred cCCCChHHHHHHHhhcCccEEEEcCCChhhHh
Q 006047 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEML 165 (663)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~ 165 (663)
+...++.+...+...++.++.........+.
T Consensus 243 -~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~ 273 (517)
T 3r44_A 243 -PQFDATKVWSLIVEERVCIGGAVPAILNFMR 273 (517)
T ss_dssp -SSCCHHHHHHHHHHTTCCEEEECHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHH
Confidence 5678999999999999999988876555443
No 52
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=69.74 E-value=14 Score=40.49 Aligned_cols=122 Identities=11% Similarity=0.102 Sum_probs=85.9
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-hHHHHHHHHhcCCeEeec
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~v~l 133 (663)
.|+.+|++... .|.++.. ..+|.+.+...+. .....++.++|+++...+-+-+ .+..+++.+..|+.++..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCL----GQSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHS----SCGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHH----HHHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 46777776653 6666643 4678877654322 2233488999999998887643 345578888999988776
Q ss_pred c-CCCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCC
Q 006047 134 Y-DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (663)
Q Consensus 134 ~-~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 184 (663)
+ ...+++.+...++..++.++.........+.+.......+++.++.-+..
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~ 287 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDI 287 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCc
Confidence 3 35688899999999999999988877766655444445677887776654
No 53
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=69.12 E-value=35 Score=36.00 Aligned_cols=122 Identities=9% Similarity=-0.038 Sum_probs=83.2
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-hHHHHHHHHhcCCeEeec
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~v~l 133 (663)
.++.+|++... .|.++.. ..+|.+.+...+..++ ...++.++|++....|-+-. .+..+++++..|+..+.+
T Consensus 141 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWIC---ADFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHH---HHSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHH---HhcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 35667766553 6666543 4678888876555443 34588999999998887633 345578889999998877
Q ss_pred cCC--CChHHHHHHHhhcCccEEEEcCCChhhHhhcC---CCcCCCCcEEEEecC
Q 006047 134 YDT--LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTTEHLKTIVSFSK 183 (663)
Q Consensus 134 ~~~--~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~---~~~~~~~~~ii~~~~ 183 (663)
... ..++.+...++..++.+++........+.... ......++.++.-+.
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~ 270 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGE 270 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSS
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecC
Confidence 543 46788999999999999988877665554432 122345666665544
No 54
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=68.39 E-value=25 Score=37.54 Aligned_cols=104 Identities=14% Similarity=0.014 Sum_probs=73.3
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhh--HH-HHHHHHhcCCeEe
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--II-GMEACNALGLHCV 131 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~--~~-~~lA~~~~G~v~v 131 (663)
.|+.+|++... .|.++.. ..+|.+.+...+..++. ..++.++|++...+|..-.+ .. .+++++..|+..+
T Consensus 189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 35677776653 5555533 46799888876665544 35899999999888765433 22 4788888999887
Q ss_pred eccCCCChHHHHHHHhhcCccEEEEcCCChhhHhh
Q 006047 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (663)
Q Consensus 132 ~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~ 166 (663)
..+ ...+..+...++..++.++.........+.+
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~ 297 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLE 297 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHH
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHh
Confidence 764 4678889999999999999888766555443
No 55
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=67.94 E-value=23 Score=38.22 Aligned_cols=122 Identities=10% Similarity=-0.063 Sum_probs=82.7
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhh--HHHHHHHHhcCCeEee
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--IIGMEACNALGLHCVP 132 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~v~v~ 132 (663)
.|+.+|++... .|.++.. ..+|++.+...+..++. ..++.++|++...+|-.-.+ ...+++++..|+..+.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 46777777653 5655533 56899988876655543 45899999999988876433 3347888999999888
Q ss_pred ccCCC---ChHHHHHHHhhcCccEEEEcCCChhhHhhcC------CCcCCCCcEEEEecC
Q 006047 133 LYDTL---GAGAVEFIICHSGVSIAFVEEKKIPEMLKTF------PKTTEHLKTIVSFSK 183 (663)
Q Consensus 133 l~~~~---~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~------~~~~~~~~~ii~~~~ 183 (663)
..+.. .+..+...++..++.++.+.......+.+.. .....+++.++.-..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~ 299 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAE 299 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSS
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCC
Confidence 76532 6778899999999998887665554443321 112355666665444
No 56
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=66.21 E-value=19 Score=38.89 Aligned_cols=122 Identities=10% Similarity=0.099 Sum_probs=85.6
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch-hhHHHHHHHHhcCCeEeec
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP-EWIIGMEACNALGLHCVPL 133 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~v~l 133 (663)
.|+.+|++... .|.++.. ..+|.+.+..... .....++.++|+++.++|-+- -....+++++..|+..+..
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~----~~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYL----GQDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHS----SCCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHH----hhhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 46777776652 5555432 4678887753322 122348899999998888753 3455678888999988877
Q ss_pred cC-CCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCC
Q 006047 134 YD-TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (663)
Q Consensus 134 ~~-~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 184 (663)
.. ...+..+...++..++.++.........+.+.......+++.++.-...
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~ 337 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEP 337 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEeccc
Confidence 54 5678899999999999999998877776666555455677777766553
No 57
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=65.99 E-value=50 Score=35.19 Aligned_cols=105 Identities=7% Similarity=-0.071 Sum_probs=77.8
Q ss_pred CCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH-HHHHHHHHcCcEEEEE
Q 006047 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGFW 299 (663)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~ 299 (663)
++.+|++....+..+ -..-.+|.+.+...+..++..+... ++.+||++..+++-+ ..+ ..++.++..|+..+..
T Consensus 33 p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl 107 (549)
T 3g7s_A 33 GEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGISRK--GVRKGEHVGVCIPNS--IDYVMTIYALWRVAATPVPI 107 (549)
T ss_dssp TTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEC
T ss_pred CCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCC--HHHHHHHHHHHHhCCEEEcc
Confidence 466777655321111 1225789999999999888877433 788999999988876 344 4477789999998877
Q ss_pred cC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHH
Q 006047 300 RG--DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (663)
Q Consensus 300 ~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 330 (663)
+. ...++...++..+++.++........+..
T Consensus 108 ~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 108 NPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 65 78999999999999999998877665543
No 58
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=65.82 E-value=41 Score=35.44 Aligned_cols=105 Identities=9% Similarity=-0.093 Sum_probs=69.4
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh-hHHHHHHHHhcCCeEeec
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~v~v~l 133 (663)
.|+.+|++... .|.++.. ..+|.+.+...+..+.. ..++.++|++...+|-.-. .+..++.+...|+..+.+
T Consensus 158 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIHT--AAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEEE--EC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEeC--CCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 46677766543 5666543 46788888776655443 4589999999988876532 223334434444444444
Q ss_pred cCCCChHHHHHHHhhcCccEEEEcCCChhhHhhc
Q 006047 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167 (663)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~ 167 (663)
. ..+++.+...++..++.+++........+.+.
T Consensus 233 ~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~ 265 (509)
T 3ivr_A 233 A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQ 265 (509)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHH
T ss_pred c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhc
Confidence 3 67899999999999999999888777666544
No 59
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=63.63 E-value=57 Score=34.66 Aligned_cols=99 Identities=9% Similarity=-0.040 Sum_probs=74.8
Q ss_pred CCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH-HHHHHHHHcCcEEEEE
Q 006047 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGFW 299 (663)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~ 299 (663)
++.++++....+ ..-.+|.+.+...+..++..+.. .++.+||++..+++.+ ..+ ..++.++..|+..+..
T Consensus 32 p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vpl 102 (541)
T 1v25_A 32 GRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLRA--LGVGVGDRVATLGFNH--FRHLEAYFAVPGMGAVLHTA 102 (541)
T ss_dssp TTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEC
T ss_pred CCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCc--HHHHHHHHHHHhcCcEEEec
Confidence 455666543211 24578999999999888887743 3678999999988876 344 4467789999998877
Q ss_pred cC--CHHHHHHHhhhcCCcEEEeCcHHHHHH
Q 006047 300 RG--DVKLLLEDIGELKPTIFCAVPRVLDRI 328 (663)
Q Consensus 300 ~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l 328 (663)
+. ...++...++..++..++..+.....+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 133 (541)
T 1v25_A 103 NPRLSPKEIAYILNHAEDKVLLFDPNLLPLV 133 (541)
T ss_dssp CTTSCHHHHHHHHHHHTCSEEEECGGGHHHH
T ss_pred CcccCHHHHHHHHHhCCCcEEEEChhHHHHH
Confidence 65 788999999999999999988765543
No 60
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=62.98 E-value=42 Score=35.70 Aligned_cols=101 Identities=13% Similarity=0.057 Sum_probs=76.3
Q ss_pred CCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEE
Q 006047 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (663)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~ 299 (663)
.++.++++.. .+| -.+|.+.+...+..++..+.. .++.+||++..+++.+. -....++.++..|+..+..
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~la~~~~Gav~vpl 104 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSSP-EFVLAFLGASHRGAIITAA 104 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCEEecc
Confidence 3566776542 222 468999999999988887744 37889999999888762 2334477789999998877
Q ss_pred cC--CHHHHHHHhhhcCCcEEEeCcHHHHHHHH
Q 006047 300 RG--DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (663)
Q Consensus 300 ~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 330 (663)
+. .+.++...++..++..++........+..
T Consensus 105 ~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 105 NPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred CCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 65 78999999999999999998876665543
No 61
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=61.91 E-value=29 Score=34.79 Aligned_cols=110 Identities=8% Similarity=-0.038 Sum_probs=70.6
Q ss_pred HHHHHHHHHHhCCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCc-hhhHHHHHH
Q 006047 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC-PEWIIGMEA 122 (663)
Q Consensus 46 l~~~l~~~a~~~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~-~~~~~~~lA 122 (663)
..+.+.++ +.|.+|++... .|.++.. ..+|++.+...+..++. ..+++++|++...+|-. ...+..++.
T Consensus 27 ~~~~~~~w---~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~ 98 (358)
T 4gs5_A 27 AYDFMEKW---LGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVR 98 (358)
T ss_dssp HHHHHHHH---HHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHH
T ss_pred hhhHhhcc---CCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHH
Confidence 33444444 34667776543 6666643 47899988776555443 45899999999888765 233445566
Q ss_pred HHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCCChhhHhh
Q 006047 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (663)
Q Consensus 123 ~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~ 166 (663)
.+..|+..+...+... ....++..++.++.........+.+
T Consensus 99 ~l~~g~~~~~~~~~~~---~~~~i~~~~~t~~~~~P~~l~~ll~ 139 (358)
T 4gs5_A 99 GMELDWELTVTEPTAN---PLAGLDHADFDFVAMVPMQLQSILE 139 (358)
T ss_dssp HHHHTCEEEEECCCSC---TTTTCSSCCCSEEEECHHHHHHHHH
T ss_pred HHHhCcEEEecCcccc---HHHHHHHhCCeEEEcChHHHHHhhc
Confidence 6777887776665433 3456778888888887665555544
No 62
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=61.50 E-value=95 Score=33.58 Aligned_cols=121 Identities=14% Similarity=0.050 Sum_probs=81.9
Q ss_pred CCCCceEEEeeccCCCCc--ceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch--hhHH-HHHHHHhcCCeEee
Q 006047 58 PNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWII-GMEACNALGLHCVP 132 (663)
Q Consensus 58 Pd~~al~~~~~~d~~~~~--~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~--~~~~-~~lA~~~~G~v~v~ 132 (663)
|+.+|++... .|.++. -..+|.+.+...+..... ..++.++|++....|-.. .+.. .+++++..|+..+.
T Consensus 183 ~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v~ 257 (617)
T 3rg2_A 183 ADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVE---ICQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVVL 257 (617)
T ss_dssp TTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEEE
T ss_pred CCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHH---hcCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEEE
Confidence 5677776553 565553 356799888776655443 347889999999888543 3332 47888888998887
Q ss_pred ccCCCChHHHHHHHhhcCccEEEEcCCChhhHhhcC-----CCcCCCCcEEEEecCC
Q 006047 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKV 184 (663)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~-----~~~~~~~~~ii~~~~~ 184 (663)
.. ......+...++..++.++.........+.+.. ......++.++.-+..
T Consensus 258 ~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~ 313 (617)
T 3rg2_A 258 AA-DPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGAR 313 (617)
T ss_dssp CS-SCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSC
T ss_pred eC-CCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCc
Confidence 64 457888889999999999988876655444321 1133567777665543
No 63
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=60.30 E-value=59 Score=34.86 Aligned_cols=123 Identities=11% Similarity=-0.033 Sum_probs=80.6
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhh--HHHHHHHHhcCCeEee
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--IIGMEACNALGLHCVP 132 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~v~v~ 132 (663)
.|+.+|++... .|.++.. ..+|++ +...... ......++.++|++....+-+-.+ ...+++++..|+..+.
T Consensus 204 ~~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~~--~~~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKAK--MDAGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHHH--HHTTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEEC--CCCCCCCCEEEechH-HHHhhhh--hhhhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 35666766542 5555533 467887 4331111 112445899999988888766433 3356788889998887
Q ss_pred ccC-CCChHHHHHHHhhcCccEEEEcCCChhhHhhcCC--CcCCCCcEEEEecCC
Q 006047 133 LYD-TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP--KTTEHLKTIVSFSKV 184 (663)
Q Consensus 133 l~~-~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~--~~~~~~~~ii~~~~~ 184 (663)
... ..+++.+...++..++.+++.....+..+.+... .....++.++.-...
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~ 333 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGES 333 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCc
Confidence 653 6789999999999999999988876666554321 123566777766544
No 64
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=59.77 E-value=73 Score=32.98 Aligned_cols=105 Identities=10% Similarity=-0.008 Sum_probs=76.7
Q ss_pred CCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH-HHHHHHHHcCcEEEE
Q 006047 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGF 298 (663)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~ 298 (663)
.++.+|++.........-....+|.+.+...+..++..+... +. ++|++..+++-. ..+ ..++.++..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQG--LEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSS--HHHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCc--HHHHHHHHHHHHhCcEEEe
Confidence 357777776542211112347899999999999998888543 34 899998888777 344 447778999999887
Q ss_pred EcC-----CHHHHHHHhhhcCCcEEEeCcHHHHHHH
Q 006047 299 WRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (663)
Q Consensus 299 ~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 329 (663)
.+. ...++...++..++..++........+.
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~ 147 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVV 147 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHH
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHH
Confidence 643 4678888999999999999988766554
No 65
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=59.16 E-value=61 Score=35.57 Aligned_cols=98 Identities=14% Similarity=0.175 Sum_probs=74.2
Q ss_pred CCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhh-hccccCCCCcEEEEcCChhhHHHH-HHHHHHHHcCcEEE
Q 006047 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE-SVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIG 297 (663)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~-~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v 297 (663)
.++.+|++.... .+| ....+|.+.+...+..++..+. . .+..+||++..++|.. ..+ ..+++++..|+..+
T Consensus 95 ~pd~~Al~~~~~-~~~--~~~~~TY~eL~~~v~~lA~~L~~~--~Gv~~Gd~V~i~~~~~--~e~v~a~lA~~~~Gav~v 167 (663)
T 1ry2_A 95 TPNKKAIIFEGD-EPG--QGYSITYKELLEEVCQVAQVLTYS--MGVRKGDTVAVYMPMV--PEAIITLLAISRIGAIHS 167 (663)
T ss_dssp CTTSEEEEEECS-STT--CCEEEEHHHHHHHHHHHHHHHHHT--SCCCTTCEEEECCCSS--HHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEEEcC-CCC--ceEEEEHHHHHHHHHHHHHHHHHh--cCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCCEEE
Confidence 356777765432 122 2357999999999999888774 3 2688999999999987 344 44777899999887
Q ss_pred EEcC--CHHHHHHHhhhcCCcEEEeCcHH
Q 006047 298 FWRG--DVKLLLEDIGELKPTIFCAVPRV 324 (663)
Q Consensus 298 ~~~~--~~~~~~~~i~~~~~t~l~~~P~~ 324 (663)
.... .+..+...++..++.+++.....
T Consensus 168 pl~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 168 VVFAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred eeCCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 7665 88999999999999999987653
No 66
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=58.63 E-value=68 Score=33.64 Aligned_cols=97 Identities=13% Similarity=0.053 Sum_probs=71.0
Q ss_pred CCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEc
Q 006047 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (663)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 300 (663)
++.++++.. . .+..+|++.+...+..++..+.. .+..++|++..+++-+. -....++.++..|+..+..+
T Consensus 16 p~~~a~~~~---~----~~~~~Ty~el~~~~~~~A~~L~~--~Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~ 85 (504)
T 1t5h_X 16 PDHCALAVP---A----RGLRLTHAELRARVEAVAARLHA--DGLRPQQRVAVVAPNSA-DVVIAILALHRLGAVPALLN 85 (504)
T ss_dssp TTSEEEEET---T----TTEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSCH-HHHHHHHHHHHHTCEEEEEC
T ss_pred CCceEEEEc---C----CCceeEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCH-HHHHHHHHHHHhCcEEEecC
Confidence 456666542 1 13579999999999988887743 26789999999888773 22344777899999988776
Q ss_pred C--CHHHHHHHhhhcCCcEEEe--CcHHHHH
Q 006047 301 G--DVKLLLEDIGELKPTIFCA--VPRVLDR 327 (663)
Q Consensus 301 ~--~~~~~~~~i~~~~~t~l~~--~P~~l~~ 327 (663)
. .+.++...++..+++.++. .+.....
T Consensus 86 ~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~ 116 (504)
T 1t5h_X 86 PRLKSAELAELIKRGEMTAAVIAVGRQVADA 116 (504)
T ss_dssp TTSCHHHHHHHHHHTTCSEEEECC--CHHHH
T ss_pred CccChHHHHHHHhhcCCcEEEEecchhhhhh
Confidence 5 7888999999999999988 6554443
No 67
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=57.05 E-value=71 Score=34.20 Aligned_cols=83 Identities=4% Similarity=-0.043 Sum_probs=66.3
Q ss_pred EEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH-HHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCc
Q 006047 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPT 316 (663)
Q Consensus 240 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t 316 (663)
-.+|.+.+...+..++..+... ++.+||++..+++-+ ..+ ..++.++..|+..+..+. ...++...++..++.
T Consensus 63 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~ 138 (563)
T 1amu_A 63 EQLTYHELNVKANQLARIFIEK--GIGKDTLVGIMMEKS--IDLFIGILAVLKAGGAYVPIDIEYPKERIQYILDDSQAR 138 (563)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCS
T ss_pred ceecHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCC
Confidence 4689999999988888776432 678999999888877 344 446778999999887765 788999999999999
Q ss_pred EEEeCcHHHH
Q 006047 317 IFCAVPRVLD 326 (663)
Q Consensus 317 ~l~~~P~~l~ 326 (663)
.++..+....
T Consensus 139 ~li~~~~~~~ 148 (563)
T 1amu_A 139 MLLTQKHLVH 148 (563)
T ss_dssp EEEECGGGHH
T ss_pred EEEEcCchhh
Confidence 9998876543
No 68
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=54.81 E-value=61 Score=34.86 Aligned_cols=97 Identities=7% Similarity=-0.030 Sum_probs=74.2
Q ss_pred CCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEE
Q 006047 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFW 299 (663)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~ 299 (663)
.++.+|++..... | ....+|.+.+......++..+.. .++.+||++..+++... --+..++.++..|+..+..
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~~--~Gv~~Gd~V~l~~~~~~-e~~~~~lA~~~~Gav~vpl 141 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFVK--HGIGKGDYVMLTLKSRY-DFWYCMLGLHKLGAIAVPA 141 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECTTCT-HHHHHHHHHHHHTCEEEEC
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCCH-HHHHHHHHHHhCCEEEEeC
Confidence 4677887765431 2 24679999999999988887753 37889999999988773 2234477789999988876
Q ss_pred cC--CHHHHHHHhhhcCCcEEEeCcH
Q 006047 300 RG--DVKLLLEDIGELKPTIFCAVPR 323 (663)
Q Consensus 300 ~~--~~~~~~~~i~~~~~t~l~~~P~ 323 (663)
+. .+..+...++..++..++....
T Consensus 142 ~~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 142 THMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp CTTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred CccCCHHHHHHHHHhcCCCEEEEecc
Confidence 65 7899999999999999988664
No 69
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=54.31 E-value=47 Score=35.02 Aligned_cols=103 Identities=9% Similarity=-0.007 Sum_probs=72.8
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCch--hhHHHHHHHHhcCCeEee
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWIIGMEACNALGLHCVP 132 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~v~v~ 132 (663)
.|+.+|++... .|.++.. ..+|.+.+...+..++..+ ++.++|++...+|..- .++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 46677776653 6666543 4689998888776665544 7889999888777542 234457888999999876
Q ss_pred ccCCCChHHHHHHHhhcCccEEEEcCCChhhHhh
Q 006047 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (663)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~ 166 (663)
. +....+.+...+ ..++.+++........+.+
T Consensus 228 ~-~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 L-GRFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp C-SSCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred C-CCCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 6 556777777777 6788888887766655544
No 70
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=52.97 E-value=76 Score=33.31 Aligned_cols=85 Identities=16% Similarity=0.088 Sum_probs=68.2
Q ss_pred EEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH-HHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCc
Q 006047 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPT 316 (663)
Q Consensus 240 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t 316 (663)
-.+|.+.+...+..++..+... ++.+||++..+++.+ ..+ ..++.++..|+..+..+. ...++...++..+++
T Consensus 27 ~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~ 102 (503)
T 4fuq_A 27 DKISYAELVARAGRVANVLVAR--GLQVGDRVAAQTEKS--VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPK 102 (503)
T ss_dssp CEEEHHHHHHHHHHHHHHHHHT--TCCTTCEEEEECCSC--HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCS
T ss_pred cEEEHHHHHHHHHHHHHHHHHc--CCCCCCEEEEECCCC--HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCc
Confidence 3689999999999888877443 788999999988877 344 447778999999887765 789999999999999
Q ss_pred EEEeCcHHHHHH
Q 006047 317 IFCAVPRVLDRI 328 (663)
Q Consensus 317 ~l~~~P~~l~~l 328 (663)
.++..+.....+
T Consensus 103 ~vi~~~~~~~~~ 114 (503)
T 4fuq_A 103 IVVCDPSKRDGI 114 (503)
T ss_dssp EEEECGGGTTTT
T ss_pred EEEECchhhHHH
Confidence 999987755443
No 71
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=52.88 E-value=87 Score=34.20 Aligned_cols=97 Identities=12% Similarity=0.084 Sum_probs=72.7
Q ss_pred CCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEc
Q 006047 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (663)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~ 300 (663)
++.+|++... ..+| ..-.+|.+.+...+..++..+... +..+||++..++|... -....++.++..|+..+...
T Consensus 90 pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~~~--Gv~~Gd~V~i~~~~~~-e~vva~lA~~~~Gav~vpl~ 163 (652)
T 1pg4_A 90 GDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLLDL--GIKKGDVVAIYMPMVP-EAAVAMLACARIGAVHSVIF 163 (652)
T ss_dssp TTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHHHH--TCCTTCEEEEECCSSH-HHHHHHHHHHHHTCEEEECC
T ss_pred CCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEeCCCH-HHHHHHHHHHHcCcEEEecC
Confidence 4667776432 2122 245799999999999888877543 7889999999998873 22344777889999887766
Q ss_pred C--CHHHHHHHhhhcCCcEEEeCcH
Q 006047 301 G--DVKLLLEDIGELKPTIFCAVPR 323 (663)
Q Consensus 301 ~--~~~~~~~~i~~~~~t~l~~~P~ 323 (663)
. .+..+...++..++..++....
T Consensus 164 ~~~~~~~l~~~l~~~~~~~li~~~~ 188 (652)
T 1pg4_A 164 GGFSPEAVAGCIIDSSSRLVITADE 188 (652)
T ss_dssp TTSCHHHHHHHHHHHTCSEEEEESE
T ss_pred CCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 5 8899999999999999988654
No 72
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=49.53 E-value=66 Score=33.98 Aligned_cols=87 Identities=5% Similarity=-0.144 Sum_probs=68.6
Q ss_pred EEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcE
Q 006047 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTI 317 (663)
Q Consensus 240 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 317 (663)
-.+|.+.+...+..++..+.. .++.++|++...++-+. -....++.++..|+..+..+. .+.++...++..+++.
T Consensus 47 ~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~n~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 123 (529)
T 2v7b_A 47 GSTTYGELEERARRFASALRT--LGVHPEERILLVMLDTV-ALPVAFLGALYAGVVPVVANTLLTPADYVYMLTHSHARA 123 (529)
T ss_dssp CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSST-HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSE
T ss_pred CCccHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCcH-HHHHHHHHHHHcCceEEecCcccCHHHHHHHHhccCCeE
Confidence 368999999999888877743 36789999999888773 223446778999999887765 7889999999999999
Q ss_pred EEeCcHHHHHHH
Q 006047 318 FCAVPRVLDRIY 329 (663)
Q Consensus 318 l~~~P~~l~~l~ 329 (663)
++..+.....+.
T Consensus 124 vi~~~~~~~~~~ 135 (529)
T 2v7b_A 124 VIASGALVQNVT 135 (529)
T ss_dssp EEEEGGGHHHHH
T ss_pred EEechhhhhHHH
Confidence 999887665543
No 73
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=43.73 E-value=83 Score=31.09 Aligned_cols=66 Identities=5% Similarity=-0.090 Sum_probs=49.1
Q ss_pred HHHhCC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCC
Q 006047 94 AIRTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (663)
Q Consensus 94 ~L~~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~ 159 (663)
...+.| +++|+.|.+....+-.-..+.++|...|..++.+-|...+..-...++..++++++++..
T Consensus 61 ~a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 61 KAEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 334555 488988756566677778888888888998877766655566677889999999988754
No 74
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=43.48 E-value=48 Score=39.87 Aligned_cols=122 Identities=12% Similarity=0.061 Sum_probs=84.2
Q ss_pred CCCCCceEEEeeccCCCCcc--eEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhh-HHHHHHHHhcCCeEeec
Q 006047 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (663)
Q Consensus 57 ~Pd~~al~~~~~~d~~~~~~--~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~v~v~l 133 (663)
.|+.+|++..+ .|.+|.. ..+|.+.+... .......++.++|+++.+.+-+-+. +.-+++.+..|+..+..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 47777776653 6666644 36788776532 2222234889999998888776543 45578888899998877
Q ss_pred cC--CCChHHHHHHHhhcCccEEEEcCCChhhHhhcCCCcCCCCcEEEEecCC
Q 006047 134 YD--TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (663)
Q Consensus 134 ~~--~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~ii~~~~~ 184 (663)
++ ..+++.+...+...++.++.........+..........++.+++-+..
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~ 731 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGER 731 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCC
Confidence 65 3578899999999999999888776665554433333567777766554
No 75
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=41.72 E-value=1.1e+02 Score=32.06 Aligned_cols=81 Identities=12% Similarity=0.008 Sum_probs=62.9
Q ss_pred EEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcE
Q 006047 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTI 317 (663)
Q Consensus 240 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~ 317 (663)
-.+|.+.+...+..++..+.. .++.++|++..+++... -.+..+++++..|+..+..+. .+..+...++..+++.
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~~--~g~~~gd~V~i~~~n~~-~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ 104 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFIDS--LALLAKSPVLVFGAQTY-DMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPSL 104 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHHH--TCCCTTCCEEEEECSSH-HHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCSE
T ss_pred CeecHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEeCCCH-HHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCCE
Confidence 358999999999888877744 26788999888877762 223446778899998877665 7889999999999999
Q ss_pred EEeCcH
Q 006047 318 FCAVPR 323 (663)
Q Consensus 318 l~~~P~ 323 (663)
++....
T Consensus 105 ii~~~~ 110 (521)
T 3l8c_A 105 IIAIEE 110 (521)
T ss_dssp EEESSC
T ss_pred EEecCc
Confidence 987654
No 76
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=39.74 E-value=1.1e+02 Score=35.17 Aligned_cols=98 Identities=13% Similarity=0.083 Sum_probs=75.2
Q ss_pred CCCCeEEEEEccCCCCCCceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHH-HHHHHHHHcCcEEEE
Q 006047 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDR-AIEEVFISNGAAIGF 298 (663)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~-~~~~~~l~~G~~~v~ 298 (663)
.++.++++.. .+| -.+|.+.+......+...+.. .++.++|++..+++-+ ..+ ..++.++..|+..+.
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~~--~Gv~~gd~V~i~~~ns--~e~~v~~lA~~~~Ga~~vp 142 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFHK--LGVNQNDVVMLLLPNC--PEFVLSFLAASFRGATATA 142 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECSSC--HHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHHH--cCCCCcCEEEEEeCCC--HHHHHHHHHHHHcCCEEEe
Confidence 4577776542 222 468999999999888887744 3788999999998877 344 447778999999887
Q ss_pred EcC--CHHHHHHHhhhcCCcEEEeCcHHHHHH
Q 006047 299 WRG--DVKLLLEDIGELKPTIFCAVPRVLDRI 328 (663)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l 328 (663)
.+. .+.++...++..+++.++..+.....+
T Consensus 143 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~ 174 (979)
T 3tsy_A 143 ANPFFTPAEIAKQAKASNTKLIITEARYVDKI 174 (979)
T ss_dssp ECTTSCHHHHHHHHHHHTEEEEEECSTTTTTS
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEChHHHHHH
Confidence 765 789999999999999999987665443
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=35.95 E-value=2.5e+02 Score=25.49 Aligned_cols=53 Identities=11% Similarity=-0.081 Sum_probs=37.3
Q ss_pred CcEEEEcCCh-hhHHHHHH-HHHHHHcCcEEEEEcC--CHHHHHHHhhhcCCcEEEe
Q 006047 268 EDVYVSYLPL-AHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCA 320 (663)
Q Consensus 268 ~d~~~~~~p~-~~~~g~~~-~~~~l~~G~~~v~~~~--~~~~~~~~i~~~~~t~l~~ 320 (663)
+.+++...+- .|..|..+ ....-..|..++.... +++.+++.+++++++.+..
T Consensus 93 ~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d~v~l 149 (215)
T 3ezx_A 93 GLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGEKVLL 149 (215)
T ss_dssp CEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCCEEEE
Confidence 4444444332 37777765 4555677877776654 8999999999999998777
No 78
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=35.15 E-value=1.8e+02 Score=30.73 Aligned_cols=87 Identities=9% Similarity=-0.130 Sum_probs=67.6
Q ss_pred eEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEEEEcC--C-------HHHHHHH
Q 006047 239 GVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--D-------VKLLLED 309 (663)
Q Consensus 239 ~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v~~~~--~-------~~~~~~~ 309 (663)
.-.+|.+.+...+..++..+... ++.+||++..+++.+. --...++.++..|+..+..+. . ...+...
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~~~--Gv~~gd~V~i~~~~~~-~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~ 123 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLLSL--NLKKGDRVALIAETSS-EFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGL 123 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHHT--CCCTTCEEEEECCSSH-HHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHHHc--CCCCCCEEEEEcCCcH-HHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHH
Confidence 35789999999999988877533 6789999999988773 223447778999999887754 2 5778888
Q ss_pred hhhcCCcEEEeCcHHHHHH
Q 006047 310 IGELKPTIFCAVPRVLDRI 328 (663)
Q Consensus 310 i~~~~~t~l~~~P~~l~~l 328 (663)
++..++..++........+
T Consensus 124 l~~~~~~~ii~~~~~~~~~ 142 (576)
T 3gqw_A 124 LASCQPAAIITGDEWLPLV 142 (576)
T ss_dssp HHHHCCSEEEECGGGHHHH
T ss_pred HHhcCCCEEEecHHHHHHH
Confidence 9999999999988765554
No 79
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=35.11 E-value=1.2e+02 Score=28.94 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=50.2
Q ss_pred HHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhH
Q 006047 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (663)
Q Consensus 48 ~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (663)
.++++..+..|+...+++. |...-.|-..|..++.+.+.+++.+|.+.|+ ...++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~----~~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGI----KMLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCCccHH
Confidence 4567777889999999988 7766677778999999999999999999876 3556666666653
No 80
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=34.85 E-value=1.3e+02 Score=29.87 Aligned_cols=69 Identities=9% Similarity=-0.060 Sum_probs=53.1
Q ss_pred HHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcCC
Q 006047 91 VVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (663)
Q Consensus 91 ~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~~ 159 (663)
+.....+.-+++|.+..+....+-.-..+.++|..+|..+..+-|...+..-...++..++++++++..
T Consensus 74 i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 74 ITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 333333334688887777777778888889999999999888777776777778899999999988653
No 81
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=33.51 E-value=2.7e+02 Score=29.42 Aligned_cols=99 Identities=9% Similarity=-0.074 Sum_probs=70.0
Q ss_pred CCCCeEEEEEccCCCCCC--ceEEeccHHHHHHHhhhhhhhhhccccCCCCcEEEEcCChhhHHHHHHHHHHHHcCcEEE
Q 006047 220 KKNDICTIMYTSGTTGDP--KGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIG 297 (663)
Q Consensus 220 ~~~~~a~i~~TSGtTG~p--K~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~d~~~~~~p~~~~~g~~~~~~~l~~G~~~v 297 (663)
.++.++++...+ ..+.. ..-.+|++.+...+..++..+... +. ++|++..+++... -.+..++.++..|+..+
T Consensus 33 ~p~~~A~~~~~~-~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~~-~~~~~~lA~~~~Gav~v 107 (562)
T 3ite_A 33 HPEWKAVEVATG-FLGSQKIVTEDWTYKKLNETANQVANLIIHA--SL-HGRAIAVSLDRSL-IAFAIIVGIMKSGNTYV 107 (562)
T ss_dssp CTTSEEEEEEEC-C-----CEEEEEEHHHHHHHHHHHHHHHHHT--TC-SSCEEEEECCSCH-HHHHHHHHHHHTTCEEE
T ss_pred CCCchhhhcccc-cccccccccCCCCHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEeCCCH-HHHHHHHHHHHhCCEEE
Confidence 456777665432 22222 235789999999999888877443 45 6999988888773 22344777899999888
Q ss_pred EEcC--CHHHHHHHhhhcCCcEEEeCcH
Q 006047 298 FWRG--DVKLLLEDIGELKPTIFCAVPR 323 (663)
Q Consensus 298 ~~~~--~~~~~~~~i~~~~~t~l~~~P~ 323 (663)
..+. ...++...++..++..++....
T Consensus 108 pl~~~~~~~~l~~~l~~~~~~~~i~~~~ 135 (562)
T 3ite_A 108 PIEAGLPNDRKSFLLRDSRAAMAFVCDN 135 (562)
T ss_dssp ECCTTSCHHHHHHHHHHHTCSEEEECTT
T ss_pred ecCCcCHHHHHHHHHHhcCCCEEEEccc
Confidence 7765 7888999999999998887644
No 82
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=29.69 E-value=2e+02 Score=28.12 Aligned_cols=77 Identities=14% Similarity=0.049 Sum_probs=50.5
Q ss_pred EeeHHHHHHHHHHH--HH-HHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEE
Q 006047 78 WKTYKEVYDLVIKV--VN-AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (663)
Q Consensus 78 ~~Ty~el~~~v~~~--A~-~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~v 154 (663)
.+++.+........ |. .+...++++|++|+|+.--+.-...++++....|+.++-+.. +.++ ..++...++..+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEE
Confidence 36777654433332 22 244458999999999988777777777777777877666644 2343 455667778766
Q ss_pred EEc
Q 006047 155 FVE 157 (663)
Q Consensus 155 l~~ 157 (663)
+-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 643
No 83
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=27.59 E-value=1.2e+02 Score=30.31 Aligned_cols=60 Identities=15% Similarity=-0.090 Sum_probs=39.6
Q ss_pred HHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccC-----CCChHHHHHHHhhcC--ccEEEE
Q 006047 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYD-----TLGAGAVEFIICHSG--VSIAFV 156 (663)
Q Consensus 94 ~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~-----~~~~~~l~~~l~~~~--~~~vl~ 156 (663)
.|...++++||.|.+-.+....+ .-++...|+.++.++. ..+.+++...+...+ .++|+.
T Consensus 69 al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~ 135 (377)
T 3ju7_A 69 AIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVP 135 (377)
T ss_dssp HHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECC
T ss_pred HHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEE
Confidence 34455789999988876655443 3455678988776653 247788888774434 666653
No 84
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=24.97 E-value=2.5e+02 Score=28.77 Aligned_cols=63 Identities=6% Similarity=-0.047 Sum_probs=47.9
Q ss_pred HhCC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcC
Q 006047 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (663)
Q Consensus 96 ~~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~ 158 (663)
.+.| +++|....+....+-.-..+.++|...|..++.+-|......-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 4556 47786666666667777888888999999888776666666677788999999999874
No 85
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=23.73 E-value=2.9e+02 Score=25.99 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhh
Q 006047 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (663)
Q Consensus 48 ~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~ 116 (663)
.++++..+..|+...+++. |...-.|-..++.++.+++.+.+..|.+.|+ ...++.-|+...
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~iviaCNTas~ 78 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI----KMLVIACNTATA 78 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC----SEEEECCHHHHH
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCchhhH
Confidence 4567777889999988887 6654455567899999999999999998775 355555555553
No 86
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=23.05 E-value=2.6e+02 Score=27.80 Aligned_cols=59 Identities=10% Similarity=0.013 Sum_probs=38.8
Q ss_pred HhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCC----CChHHHHHHHhhc--CccEEEEc
Q 006047 96 RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT----LGAGAVEFIICHS--GVSIAFVE 157 (663)
Q Consensus 96 ~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~----~~~~~l~~~l~~~--~~~~vl~~ 157 (663)
...++++||.|++..+....... ++...|+.++.++.. ...+++...++.. +.++|+..
T Consensus 65 ~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~ 129 (394)
T 1o69_A 65 RVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILT 129 (394)
T ss_dssp HHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEE
T ss_pred HHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEE
Confidence 33457889998888777665543 334478877766532 4677888888754 56666654
No 87
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=22.57 E-value=1e+02 Score=30.39 Aligned_cols=63 Identities=6% Similarity=-0.051 Sum_probs=39.5
Q ss_pred CCCCCCEEEEEcCCch------hhHHHHHHH-HhcCCeEeeccCC------------CChHHHHHHHhhcCccEEEEcCC
Q 006047 99 GVEERGKCGIYGVNCP------EWIIGMEAC-NALGLHCVPLYDT------------LGAGAVEFIICHSGVSIAFVEEK 159 (663)
Q Consensus 99 gv~~gd~V~i~~~n~~------~~~~~~lA~-~~~G~v~v~l~~~------------~~~~~l~~~l~~~~~~~vl~~~~ 159 (663)
-+++||+|+|+.|.+. +-+-..... -..|..++.-..- ..++++..++.+-.+++|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4799999999999853 223222222 2358777653211 13346777777888888888765
Q ss_pred Ch
Q 006047 160 KI 161 (663)
Q Consensus 160 ~~ 161 (663)
-+
T Consensus 88 G~ 89 (327)
T 4h1h_A 88 GF 89 (327)
T ss_dssp CS
T ss_pred ch
Confidence 43
No 88
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=22.44 E-value=1.1e+02 Score=29.08 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCCCCEEEEEcCC
Q 006047 90 KVVNAIRTCGVEERGKCGIYGVN 112 (663)
Q Consensus 90 ~~A~~L~~~gv~~gd~V~i~~~n 112 (663)
.+...|+++||++||.|.|+..-
T Consensus 19 ~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 19 TITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHcCCCCCCEEEEEech
Confidence 45568889999999999999775
No 89
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=22.04 E-value=2.6e+02 Score=27.23 Aligned_cols=55 Identities=5% Similarity=-0.017 Sum_probs=25.1
Q ss_pred CCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCC----CChHHHHHHHhhcCccEEEE
Q 006047 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT----LGAGAVEFIICHSGVSIAFV 156 (663)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~----~~~~~l~~~l~~~~~~~vl~ 156 (663)
++||.|++..+....+...+.++...|+.++.++.. .+.+++...++. ++++++.
T Consensus 87 ~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~ 145 (384)
T 1eg5_A 87 KRKRTIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVDE-DTFLVSI 145 (384)
T ss_dssp TTCCEEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCCT-TEEEEEE
T ss_pred CCCCEEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhCC-CCeEEEE
Confidence 456665555444333333333334446555544321 344555555543 4444444
No 90
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=21.84 E-value=1.7e+02 Score=29.74 Aligned_cols=51 Identities=8% Similarity=-0.022 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHhC--CCCCCCEEEEEcCCc-hhhH-HHHHHHHhcCCeEeecc
Q 006047 84 VYDLVIKVVNAIRTC--GVEERGKCGIYGVNC-PEWI-IGMEACNALGLHCVPLY 134 (663)
Q Consensus 84 l~~~v~~~A~~L~~~--gv~~gd~V~i~~~n~-~~~~-~~~lA~~~~G~v~v~l~ 134 (663)
+..+..++|..+.+. ++++|+.|.|..+-. .+++ .+.-++..+|+.++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~ 58 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVI 58 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEE
Confidence 356777888888875 789999999998865 3443 34456677799887654
No 91
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=21.57 E-value=3.2e+02 Score=25.78 Aligned_cols=62 Identities=15% Similarity=0.122 Sum_probs=47.2
Q ss_pred HHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHh-CCCCCCCEEEEEcCCchhh
Q 006047 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEW 116 (663)
Q Consensus 48 ~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~-~gv~~gd~V~i~~~n~~~~ 116 (663)
.++++..+..|+...+++. |...-.|-..|..++.+++.+.+..|.+ .|+ | ..++.-|+...
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~---d-~iViACNTas~ 79 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVG---DTKRCPYGPRPEEEVLQYTWELTNYLLENHHI---K-MLVIACNTATA 79 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEE---CGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCC---S-EEEECCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEec---cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCC---C-EEEEeCchhhH
Confidence 5677777889999988887 6544455567899999999999999998 876 3 55555566553
No 92
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=21.34 E-value=1.8e+02 Score=28.05 Aligned_cols=73 Identities=10% Similarity=0.092 Sum_probs=47.0
Q ss_pred EeeHHHHHHHHHHHHH---HHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEE
Q 006047 78 WKTYKEVYDLVIKVVN---AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (663)
Q Consensus 78 ~~Ty~el~~~v~~~A~---~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~v 154 (663)
.+++.+.......++. .|...++++|++|+|+.--.+-..++.+|- ..|+.++.+. +.+++. ++++.++..+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~---~~~~~~-~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS---ASLSQA-LAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC---SSCCHH-HHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE---ChhhHH-HHHHcCCCEE
Confidence 3688876533333322 233348999999999999556777777765 4688766665 333333 3466788877
Q ss_pred E
Q 006047 155 F 155 (663)
Q Consensus 155 l 155 (663)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 7
No 93
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=21.23 E-value=1.2e+02 Score=29.00 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=48.4
Q ss_pred HHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchhhH
Q 006047 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (663)
Q Consensus 48 ~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (663)
..++...+..|+.-.+++. |...-.|-.-||.++.+.+.+.+.+|.+.|+ ...++.-|+...+
T Consensus 38 tv~~~i~~~lP~e~~iy~~---D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~----d~IVIACNTa~~~ 100 (274)
T 3uhf_A 38 SVLKSLYEARLFDEIIYYG---DTARVPYGVKDKDTIIKFCLEALDFFEQFQI----DMLIIACNTASAY 100 (274)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCChhHH
Confidence 3566667788999999888 7655566678999999999999999988766 3566666666543
No 94
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=21.04 E-value=3.7e+02 Score=25.85 Aligned_cols=77 Identities=13% Similarity=0.136 Sum_probs=48.6
Q ss_pred eHHHHHHHHHHHHHHHHhCC-CCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeeccCCCChHHHHHHHhhcCccEEEEcC
Q 006047 80 TYKEVYDLVIKVVNAIRTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (663)
Q Consensus 80 Ty~el~~~v~~~A~~L~~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l~~~~~~~~l~~~l~~~~~~~vl~~~ 158 (663)
++++--. ..+...+.+.| +++|+.|.- ...+-.-..+.++|...|..++.+-|...+..-...++..++++++++.
T Consensus 45 SfK~R~a--~~~l~~a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~ 121 (313)
T 2q3b_A 45 SVKDRIG--VAMLQAAEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPG 121 (313)
T ss_dssp BTHHHHH--HHHHHHHHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred cHHHHHH--HHHHHHHHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCC
Confidence 5555332 22223334455 467766544 5555566667777789999887766555445566678889999998875
Q ss_pred C
Q 006047 159 K 159 (663)
Q Consensus 159 ~ 159 (663)
.
T Consensus 122 ~ 122 (313)
T 2q3b_A 122 A 122 (313)
T ss_dssp G
T ss_pred C
Confidence 3
No 95
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=20.61 E-value=2.8e+02 Score=22.49 Aligned_cols=53 Identities=11% Similarity=0.046 Sum_probs=39.4
Q ss_pred HHHHHHhCCCCCCCEEEEEcCCchhhHHHHHHHHhcCCeEeec--cCCCChHHHH
Q 006047 91 VVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPL--YDTLGAGAVE 143 (663)
Q Consensus 91 ~A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~v~v~l--~~~~~~~~l~ 143 (663)
.+.+|.+.|+.+...+.|...+..+.+.++-=|+++|...+.+ .+..+..+.+
T Consensus 46 ~~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~R 100 (119)
T 1ofu_X 46 THEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARK 100 (119)
T ss_dssp CHHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHH
T ss_pred CHHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHH
Confidence 4667888999988888888888889999999999998765444 2455555433
No 96
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=20.22 E-value=1.3e+02 Score=28.22 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=45.5
Q ss_pred HHHHHHHHhCCCCCceEEEeeccCCCCcceEeeHHHHHHHHHHHHHHHHhCCCCCCCEEEEEcCCchh
Q 006047 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (663)
Q Consensus 48 ~~l~~~a~~~Pd~~al~~~~~~d~~~~~~~~~Ty~el~~~v~~~A~~L~~~gv~~gd~V~i~~~n~~~ 115 (663)
.++++..+..|+...+++. |...-.|...|+.++.+.+.+.+..|.+.|+ | ..++.-|+..
T Consensus 14 tv~~~l~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d-~iviaCNTa~ 74 (255)
T 2jfz_A 14 SVLKSLLKARLFDEIIYYG---DSARVPYGTKDPTTIKQFGLEALDFFKPHEI---E-LLIVACNTAS 74 (255)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHGGGCC---S-CEEECCHHHH
T ss_pred HHHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---C-EEEEeCchhh
Confidence 3566666789999999888 7655556667999999999999999998876 3 4444445554
Done!