Query 006048
Match_columns 663
No_of_seqs 163 out of 972
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 17:36:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006048.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006048hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1300 Vesicle trafficking pr 100.0 8E-101 2E-105 813.8 53.3 575 17-651 2-584 (593)
2 PF00995 Sec1: Sec1 family; I 100.0 9.1E-90 2E-94 784.5 45.1 540 43-648 1-564 (564)
3 KOG1299 Vacuolar sorting prote 100.0 3.4E-85 7.3E-90 670.8 44.5 532 20-651 5-548 (549)
4 KOG1302 Vacuolar sorting prote 100.0 1.6E-84 3.4E-89 692.1 43.2 559 11-648 10-599 (600)
5 COG5158 SEC1 Proteins involved 100.0 3.5E-83 7.5E-88 694.3 50.8 566 16-654 2-580 (582)
6 KOG1301 Vesicle trafficking pr 100.0 5.3E-81 1.2E-85 647.4 42.0 569 14-655 8-618 (621)
7 PRK05581 ribulose-phosphate 3- 48.1 21 0.00046 35.2 4.0 43 604-650 171-213 (220)
8 PRK08883 ribulose-phosphate 3- 43.1 26 0.00057 35.0 3.7 45 603-651 167-211 (220)
9 PLN02334 ribulose-phosphate 3- 41.4 25 0.00053 35.3 3.2 44 604-651 175-218 (229)
10 cd00564 TMP_TenI Thiamine mono 38.6 32 0.0007 32.9 3.5 45 603-651 150-194 (196)
11 PRK00043 thiE thiamine-phospha 33.1 39 0.00085 33.0 3.2 42 604-649 161-202 (212)
12 PF14071 YlbD_coat: Putative c 31.0 46 0.00099 29.9 2.8 14 306-319 32-45 (124)
13 TIGR00693 thiE thiamine-phosph 30.5 55 0.0012 31.6 3.7 42 604-649 153-194 (196)
14 TIGR01163 rpe ribulose-phospha 29.8 61 0.0013 31.6 3.9 44 604-651 166-209 (210)
15 cd00429 RPE Ribulose-5-phospha 25.2 86 0.0019 30.5 4.0 43 604-650 167-209 (211)
16 PTZ00170 D-ribulose-5-phosphat 24.1 72 0.0016 32.0 3.2 43 603-649 173-215 (228)
17 PF12327 FtsZ_C: FtsZ family, 22.8 1.4E+02 0.003 25.4 4.3 37 600-636 35-76 (95)
18 TIGR03128 RuMP_HxlA 3-hexulose 22.8 88 0.0019 30.5 3.6 42 603-648 158-199 (206)
19 PRK08745 ribulose-phosphate 3- 22.4 1.1E+02 0.0023 30.7 4.0 44 602-649 170-213 (223)
20 cd04726 KGPDC_HPS 3-Keto-L-gul 21.7 1.1E+02 0.0024 29.5 4.0 44 602-649 157-200 (202)
21 PRK10039 hypothetical protein; 20.7 1.8E+02 0.004 26.3 4.7 41 609-649 80-125 (127)
No 1
>KOG1300 consensus Vesicle trafficking protein Sec1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.3e-101 Score=813.76 Aligned_cols=575 Identities=43% Similarity=0.710 Sum_probs=496.1
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecCCH
Q 006048 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK 96 (663)
Q Consensus 17 ~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~ 96 (663)
+|+++.+++++..+++ +. ....|||||+|+.+++|+|+||+|++++++||++++.|+..|+|+|.+.|||||+|+.
T Consensus 2 ~l~~l~~~kil~~v~~-~~---k~g~wkVLi~Dk~~~~ilss~~km~~i~~egIt~ve~i~~~ReP~~SmeaIY~i~pt~ 77 (593)
T KOG1300|consen 2 GLKELVKKKILEDVLR-VE---KKGEWKVLVVDKLTMRILSSCCKMSEILEEGITIVEDINKRREPLPSMEAIYFITPTE 77 (593)
T ss_pred chHHHHHHHHHHHhcc-cC---CCCeeEEEEecchHHHHHHHHHHHHHHHHcCceeeeeccccCCCCCcceeEEEecCch
Confidence 4788999999988887 32 2347999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcCCCC
Q 006048 97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE 176 (663)
Q Consensus 97 ~~i~~i~~d~~~~~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~~ 176 (663)
++|++++.||....|.|+.+||||+..||+.++..+.+ ..+...|+++.|++++|+|+|+++|+++.+.+|..+|.+.
T Consensus 78 ~~V~~~i~Df~~~~~~Y~~ahifF~~~c~~~lf~~l~k-s~~a~~i~tlkeinl~F~p~ESqvF~~~~~~~~~~~y~~~- 155 (593)
T KOG1300|consen 78 ESVDCLIKDFEGRSPLYKAAHIFFLDPCPDPLFNKLSK-SRAAKKIKTLKEINLAFIPYESQVFTLDSPDAFLQLYSPD- 155 (593)
T ss_pred hhHHHHHHhhcccCcccceEEEEEcCCCCHHHHHHHHh-hhHhhhhhhheecccccceecceeeeecChhhHHHhcCch-
Confidence 99999999997667899999999999999999999974 4478889999999999999999999999999999999975
Q ss_pred CccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCCCCCCeeEE
Q 006048 177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTETCDLL 256 (663)
Q Consensus 177 ~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~~~~~~Li 256 (663)
+.......++.+|.+|+++|.++|++|.|||++..+..+ ..+|.++|.++++.+..|+.+.+++|..+++.||
T Consensus 156 ~a~~~~~~l~~~a~~I~tvCatL~e~P~vRy~~~~~~~a-------s~l~~~va~~l~~~~~~~~~~~~~~p~~~~seLl 228 (593)
T KOG1300|consen 156 NAAIIDANLEKIADQIATVCATLGEYPNVRYRGDFARNA-------SELAQKVAAKLWDAYKAYKPSIGNGPQKTRSELL 228 (593)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhCcCcceeeccccccCH-------HHHHHHHHHHHHHHHHhcccccCCCCCcccceEE
Confidence 444557899999999999999999999999999876655 3689999999999999998767778888899999
Q ss_pred EEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHHHHHHHH
Q 006048 257 ILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTS 336 (663)
Q Consensus 257 IlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~~~~~~ 336 (663)
|+||++|+++|+||+||||||+||+++|+++.|.++.+...|+ ++|+++|+++|++|.++||+||++|.+.|.+.+++
T Consensus 229 IlDRs~D~iaPlLHE~TyqAM~~DLl~iend~Y~ye~~g~~g~--~kk~vllde~D~~WveLRH~HIadvse~l~~~~k~ 306 (593)
T KOG1300|consen 229 ILDRSFDPVAPLLHEFTYQAMAYDLLPIENDVYRYETPGKSGE--KKKEVLLDEDDDLWVELRHKHIADVSERLTKKMKN 306 (593)
T ss_pred EEeccccccchHHHHHHHHHHHHHHHhhcCCEEEEecCCCCCC--ccceeecccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998655553 37889999999999999999999999999999999
Q ss_pred HHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCC-ChH
Q 006048 337 FISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA-GLK 415 (663)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~-~~~ 415 (663)
|.++++.... .++..|+.|++.+|++||+|+++..+++.|++||++|++.++. .+.+++.+||++++|.+ ..+
T Consensus 307 f~~~nk~~~~-----~~k~~S~kDL~~mv~~lpqy~k~~~Kls~Hl~LA~eC~~~~~~-~L~~l~~iEQDLa~G~Daeg~ 380 (593)
T KOG1300|consen 307 FSSKNKRLQT-----KSKETSTKDLSKMVKKLPQYQKELDKLSLHLELAEECMKKFQE-GLEKLGAIEQDLATGTDAEGE 380 (593)
T ss_pred HHhhhhhhhc-----cccccchHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccCCcccc
Confidence 9998865433 2446899999999999999999999999999999999999988 99999999999999953 322
Q ss_pred -------HHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCCCCCC
Q 006048 416 -------DVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGA 488 (663)
Q Consensus 416 -------~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~ 488 (663)
.+++++. ...+...||+|++++|.+. .+|+......+|+++.|++.++..++.|+..+|..... +.
T Consensus 381 kik~~~~~~~p~l~-~~~~~~~dklR~Illy~~~-~~Gi~ee~l~kL~~~~~i~~~~~~ii~~~~~~~~~~~~-----~~ 453 (593)
T KOG1300|consen 381 KIKDSLRDLLPILL-ESNVRLLDKLRLILLYIFE-RKGIIEENLAKLLQHAGISVEEMQIIQNLHILGVPVTK-----DS 453 (593)
T ss_pred cHHHHHHhhhhhhc-ccCchHHHHHHHHHHHHHh-cCCccHHHHHHHhcccCCCchHHHHHhhHHHhCCcccc-----Cc
Confidence 2344444 4678999999999999998 47999999999999999999999999999999876541 22
Q ss_pred CCcccccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCcccccccC
Q 006048 489 FSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRS 568 (663)
Q Consensus 489 ~~~~f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~ 568 (663)
+..+| ..+.++++. .+..|.+|||+|.++.|+|++++++|+++.|||+.+++....| + ...+
T Consensus 454 ~~~k~----~~~~rker~-~e~tyqlSR~~P~Ik~ilE~~i~~~Ld~~~fp~~~~~s~~~~~-~------------~~~S 515 (593)
T KOG1300|consen 454 FLLKF----DPPERKERV-EEQTYQLSRWVPVIKNILEKLIEDRLDKKHFPYLNDTSETSSG-S------------AATS 515 (593)
T ss_pred ccccC----CCCcccccc-ccceeeeeeeehHHHHHHHHHHhccCChhhCccccCCcccccc-C------------cccc
Confidence 22222 233356774 7899999999999999999999999999999999877622111 1 1222
Q ss_pred CCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHH
Q 006048 569 RRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKM 648 (663)
Q Consensus 569 ~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l 648 (663)
+|++.|-...... .+++.++++||||+||+||+|+|++|+++++.+++|+||||+|++|.+||..|
T Consensus 516 ar~~~~~~~k~~~--------------~~~~~g~ri~VfIiGGvT~SEmRvaYevs~~~~~EViiGS~~iltP~~fL~~l 581 (593)
T KOG1300|consen 516 ARYGHPLSNKTPS--------------AFKKPGQRIIVFIIGGVTFSEMRVAYEVSEKLNREVIIGSDHILTPTKFLDDL 581 (593)
T ss_pred ccccCcccccCcc--------------hhhccCceEEEEEeCCccHHHHHHHHHHHHhhCceEEECCcccCCHHHHHHHH
Confidence 3334444332210 12357899999999999999999999999999999999999999999999999
Q ss_pred hcc
Q 006048 649 KML 651 (663)
Q Consensus 649 ~~l 651 (663)
+.+
T Consensus 582 k~~ 584 (593)
T KOG1300|consen 582 KLL 584 (593)
T ss_pred hhc
Confidence 943
No 2
>PF00995 Sec1: Sec1 family; InterPro: IPR001619 Sec1-like molecules have been implicated in a variety of eukaryotic vesicle transport processes including neurotransmitter release by exocytosis []. They regulate vesicle transport by binding to a t-SNARE from the syntaxin family. This process is thought to prevent SNARE complex formation, a protein complex required for membrane fusion. Whereas Sec1 molecules are essential for neurotransmitter release and other secretory events, their interaction with syntaxin molecules seems to represent a negative regulatory step in secretion []. ; GO: 0006904 vesicle docking involved in exocytosis, 0016192 vesicle-mediated transport; PDB: 3C98_A 3PUJ_B 1FVH_A 1FVF_A 1EPU_A 2XHE_A 1MQS_A 2PJX_A 3PUK_A 1Y9J_A.
Probab=100.00 E-value=9.1e-90 Score=784.52 Aligned_cols=540 Identities=32% Similarity=0.582 Sum_probs=409.2
Q ss_pred eEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecCCHHHHHHHHHHhccCCCCcceEEEEecC
Q 006048 43 WKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSS 122 (663)
Q Consensus 43 ~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~Ft~ 122 (663)
|||||+|+.++++||++|++++|+++||++++.|+..|+|+|+++|||||+|+.+++++|++|++. +.|++|||+|++
T Consensus 1 wKvLi~D~~~~~ils~~~~~~~L~~~gV~~i~~l~~~r~~~~~~~~iy~i~p~~~~i~~i~~~~~~--~~~~~~~i~f~~ 78 (564)
T PF00995_consen 1 WKVLILDKSTLKILSSLCSMSDLLEHGVTLIEKLENKREPMPSMDAIYFIRPTPENIKRIIKDLKN--PPYRSYHIFFTP 78 (564)
T ss_dssp -EEEEE-HHHHHHHHCCS-HHHHHTTTEEEEEETTS--S-BTTSEEEEEE-S-HHHHHHHHHHCHS--TSBSEEEEEESS
T ss_pred CEEEEECcccHHHHHhhcCHHHHHHcCCceEeeccchhhcCCCcceEEEEcCcHHHHHHHHHHHHh--cccccEEEEEeh
Confidence 999999999999999999999999999999999999999999999999999999999999999975 899999999999
Q ss_pred CCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcC-CCCCccchhHHHHHHHHHHHHHHHHhCC
Q 006048 123 PISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG-DEENSRRGDACLNVMASRIATVFASLRE 201 (663)
Q Consensus 123 ~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~-~~~~~~~~~~~l~~ia~~L~~l~~~lg~ 201 (663)
.+++.+++.|++ .++.++|.++.|+++||+|+|+|+|+|++|++|..+|. +.+ .+.++.+|++|+++|.++|.
T Consensus 79 ~~~~~~~~~l~~-~~~~~~i~~i~e~~~~~~pld~d~fsl~~~~~~~~~~~~~~~-----~~~l~~~a~~L~~l~~~~g~ 152 (564)
T PF00995_consen 79 RVSESLLEILAE-SGVLGRIKSIKEFNLDFIPLDSDLFSLEIPNSFSDLYSSDGD-----ESSLQRIADSLLSLQLTLGE 152 (564)
T ss_dssp ---HHHHHHHHH-SCGGGGEEEEEETT--SEEECTTEEEES-TCHHHHHHSTTGH-----HHHHHHHHHHHHHHHHHTT-
T ss_pred hhhhHHHHhhhh-cCccceecccccceeEEEEccchhhhhcccchHHHHhccccc-----hhHHHHHHHHHHHHHHHhCC
Confidence 999999999987 46899998899999999999999999999999999998 555 68899999999999999999
Q ss_pred ccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHh----hhhcCCCC---CCCCeeEEEEcCCCCchhhhhhhhhh
Q 006048 202 FPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKY----KQSIENFP---QTETCDLLILDRSVDQVAPIIHEWTY 274 (663)
Q Consensus 202 ~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~----~~~~~~~~---~~~~~~LiIlDR~~DliTPLlh~~TY 274 (663)
+|.|||+|+. .|+++|..+.+.+.+. ......++ ..++++|||+||++|++|||||||||
T Consensus 153 ~p~I~~~g~~-------------~a~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LiIlDR~~D~iTPll~~~TY 219 (564)
T PF00995_consen 153 IPNIRYKGNS-------------NAKRVAELLQKKLQENEDNFSSSNPDFPPGSSFERPLLIILDRSVDLITPLLHQWTY 219 (564)
T ss_dssp --EEEE-TTC-------------HHHHHHHHHHHHHHHHHTTHCHCSTTTT-SCSCCSEEEEEEEGGG-SSTTTS---BH
T ss_pred CCeEEEeCch-------------hHHHHHHHHHHHhhhccccccccccccCCccccCCceEEEecccccccchhhcCcee
Confidence 9999999982 3556666666665552 22223332 12358999999999999999999999
Q ss_pred HHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCC
Q 006048 275 DAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGG 354 (663)
Q Consensus 275 qaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 354 (663)
|||+||+|||++|.|+++.+...+ ..++++.|+++|++|+++||+||++|++.|.+++++++.++ .. ..++
T Consensus 220 e~li~d~~~i~~~~v~~~~~~~~~--~~~~~~~L~~~D~~~~~~r~~~~~~v~~~l~~~~~~~~~~~-~~------~~~~ 290 (564)
T PF00995_consen 220 EGLIDDLFGINNNKVEIPDEINSG--ENKKKVVLNSNDPFFNEIRHLHFSEVGEKLNKKAKELKEEY-EK------SRSK 290 (564)
T ss_dssp HHHHHHHSTEBTTEEEEEECSSSS--ECEEEEE-STTCTCHHHHTTSBCHHHHHHHHHHHHHHHHHC-H----------S
T ss_pred eeEHHhhhhhcCCEeccccCCCcc--ccceeEecCCCCHHHHHHHhhCHHHHHHHHHHHHHHHHHhh-cc------ccch
Confidence 999999999999999998743322 12478999999999999999999999999999999998653 10 1346
Q ss_pred CCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCh----HHHHHhhhcCCCCChh
Q 006048 355 ELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGL----KDVVKFFTTNEDVSRE 430 (663)
Q Consensus 355 ~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~~----~~~~~~i~~~~~~~~~ 430 (663)
..++++|++||++||+++++++.+++|++|+++|++.+++++|.+++++||+|++|.+.. +.+.++|. ..+.+.+
T Consensus 291 ~~~~~~~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~~Eq~i~~~~~~~~~~~~~i~~~i~-~~~~~~~ 369 (564)
T PF00995_consen 291 SKSIQEMKEFVKKLPELQEQQKSLSLHTNIAEEILKIIKKRNLDELIELEQDIASGEDSDGELLQYIEELIN-SRKISIE 369 (564)
T ss_dssp TTTHHCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHSCHTTSHB-SCHHHHHH-STTSTHH
T ss_pred hhHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhCCccchhhHHHHHHHhh-ccCCCHH
Confidence 779999999999999999999999999999999999999999999999999999987543 24788885 3678999
Q ss_pred hHHHHHHHHHHhCCCCCChh---HHHHHHHHcCCChhHHHHHHHHHHhcCccccCCCCCCCCCccccccccccc------
Q 006048 431 NKLRLLMILAAIYPEKFQGE---KGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSSTGAFSLKFDINKKRAV------ 501 (663)
Q Consensus 431 dklRLl~L~~l~~~~gl~~~---~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~~~f~~k~~~~~------ 501 (663)
++|||+|||+++. |++.. .+++.+.+.|++.+++.++.+|+++|+...+.+.+ .|.. +. +.++..
T Consensus 370 d~LRLl~L~sl~~--g~~~~~~~~l~~~l~~~~~g~~~l~~l~~L~~~g~~~~~~~~~--~~~~-~~-~~~~l~~~~~~~ 443 (564)
T PF00995_consen 370 DKLRLLCLYSLTN--GIKGKDYDQLKKLLLQAGYGIEALQLLNNLEKLGLLKSKDNSS--NFQS-IR-KKLNLISKFNDK 443 (564)
T ss_dssp HHHHHHHHHHHHH---HTCBHHHHHHHHHHHTT--HCHHHHHHHGGGGTHHCBSHTTS----CT-TC--TT---HHTTCC
T ss_pred HHHHHHHHHHHHh--cCCcchHHHHHHHhhhcCCChHHHHHHHHHHHhcchhhccCcc--chhh-hc-cccccccccccc
Confidence 9999999999994 55543 34555555555559999999999999987642100 1111 00 222221
Q ss_pred ccccCCCCcccccccccHHHHHHHHHHhcCCCC-CCCCCcccCCCCCccccccccccCCCcccccccCCCCCCccCCCCC
Q 006048 502 RKDRTGEEQTWQLSRFYPMIEELIEKLGKRELP-KDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNS 580 (663)
Q Consensus 502 ~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~-~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~ 580 (663)
.....+.+.+|+|+||+|+++++|+.+.+++|+ .+.||++........+. ..++...+ +.|....
T Consensus 444 ~~~~~~~~~~~~~~~y~Pli~rlve~~~~~~l~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~-~~~~~~~-- 509 (564)
T PF00995_consen 444 NDKNNPKDISYVYSGYAPLIVRLVEDLIKGKLDKEEEFPYLDPKPKNLNGS-----------SFSLRSSK-PSRSKTQ-- 509 (564)
T ss_dssp CSSSSCSCCCSTTCT---HHHHHHHHHHTTHSHHTTTSEBSSTCC-----S-----------SSSSS-------------
T ss_pred ccccccccccchhcccccHHHHHHHHHhhccCCcccccccccccccccCCC-----------Cccccccc-ccccccc--
Confidence 112246789999999999999999999999997 88999987544211110 01111111 0111000
Q ss_pred CCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhcC--CeEEEccCcccChhHHHHHH
Q 006048 581 DDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLN--REIILGSTSLDDPPQFITKM 648 (663)
Q Consensus 581 ~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~--~~iiigsT~Ii~~~~fl~~l 648 (663)
....+.+++||||||||||+|++++|+++++.+ ++|+||||+|+||++||++|
T Consensus 510 ---------------~~~~~~~~viVf~vGGvTy~Ei~~l~~l~~~~~~~~~iiigsT~il~~~~fl~~L 564 (564)
T PF00995_consen 510 ---------------PSNKPRKRVIVFFVGGVTYSEIRALRELSKKLGPGKEIIIGSTSILNPNDFLESL 564 (564)
T ss_dssp ------------------S-SSEEEEEEETEBEHHHHHHHHHHHTTSSSSSEEEEEESSBE-HHHHHHHH
T ss_pred ---------------cccCCCCEEEEEEEcCCcHHHHHHHHHHHHhhCCCcEEEEEeCCccCHHHHHHhC
Confidence 011357889999999999999999999999988 99999999999999999986
No 3
>KOG1299 consensus Vacuolar sorting protein VPS45/Stt10 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-85 Score=670.83 Aligned_cols=532 Identities=25% Similarity=0.421 Sum_probs=439.8
Q ss_pred HHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccC-CCCCCCCCeEEEEecCCHHH
Q 006048 20 QISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHR-RRQPLPSMEAIYFIQPTKEN 98 (663)
Q Consensus 20 ~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~-~r~~~~~~~aIy~i~Pt~~~ 98 (663)
...|..+ +.|+.... ++.|||++|+.|..++|+|+++|+|+++.|.+++.|++ .|+.+.+.+||+|||||++|
T Consensus 5 ~~~k~yi-~~m~~~~g-----~~mKvLLlD~eTt~ivS~~~tQSelLq~evyLferI~n~~rE~~khLkcvvfiRPT~en 78 (549)
T KOG1299|consen 5 SSSKKYI-EKMIQESG-----PGMKVLLLDKETTPIVSMCITQSELLQKEVYLFERIDNKSRERIKHLKCVVFIRPTPEN 78 (549)
T ss_pred HHHHHHH-HHHHHhcC-----CCceEEEEcCCCceehhhhcchHHHhhhheehhhhhcchhhHHhhCceEEEEeccChHH
Confidence 3455444 57877653 36999999999999999999999999999999999987 78999999999999999999
Q ss_pred HHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcCCCCCc
Q 006048 99 VIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEENS 178 (663)
Q Consensus 99 i~~i~~d~~~~~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~~~~ 178 (663)
|..+++++. +|+|..|||||||.+|+..++.||++ +....|+.|.|+++||+++++++|||+.|+.|.....
T Consensus 79 iq~L~~ELr--nPry~~Y~lyFsN~i~ks~le~LAes-D~~E~V~eVqE~y~Df~~~n~~Lfsln~p~~~~~~~~----- 150 (549)
T KOG1299|consen 79 IQLLIEELR--NPRYGEYHLYFSNIISKSDLERLAES-DEQEVVREVQEIYLDFFKVNPDLFSLNIPHIFESSLN----- 150 (549)
T ss_pred HHHHHHHhc--CCcceeEEEEEeccCCHHHHHHHHhc-chHHHHHHHHHHHHhhhccCCceeecCCchhhccccc-----
Confidence 999999995 59999999999999999999999974 5678888999999999999999999999998876422
Q ss_pred cchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCCCCC-CeeEEE
Q 006048 179 RRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQTE-TCDLLI 257 (663)
Q Consensus 179 ~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~~~-~~~LiI 257 (663)
|....+.++.+||.+++.+++..|.|||++++ ..|+++|+.+...+.+ .++..+|+.++ .|+|||
T Consensus 151 -w~~~~l~R~~~GI~AllLsLK~~P~IRYq~~S------------~~~~~lAe~vs~~i~~-E~~lFdfr~~~~~p~LLi 216 (549)
T KOG1299|consen 151 -WDPGALTRSTQGIIALLLSLKKKPVIRYQTSS------------RACKRLAEEVSYRITK-ESTLFDFRRTDSPPLLLI 216 (549)
T ss_pred -cChhhhhHhHhhHHHHHHhccCCCeeEeecCC------------HHHHHHHHHHHHHHhh-hhhhcccccCCCCCeEEE
Confidence 23678999999999999999999999999884 5799999999888876 45567887644 689999
Q ss_pred EcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecC-CCChHHHHhhhCcHHHHHHHHHHHHHH
Q 006048 258 LDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLE-EHDPLWLELRHAHIADASERLHEKMTS 336 (663)
Q Consensus 258 lDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~-~~D~~~~~~R~~h~~~v~~~l~~~~~~ 336 (663)
+||+.||+||||+|||||||+||++||.+|+|.+.. .++.+.+.++++|+ .+|+||+..++.||+|++..|+..+.+
T Consensus 217 LDR~~DpvTPLL~qWTYQaMvHEl~gi~nnrvdls~--~~~~~kd~~evvLS~~~D~Ff~~nmy~NfgEiG~~IK~lv~~ 294 (549)
T KOG1299|consen 217 LDRRDDPVTPLLNQWTYQAMVHELLGIKNNRVDLSK--VPSIPKDLEEVVLSSEQDPFFKNNMYANFGEIGSNIKQLVSE 294 (549)
T ss_pred EecCCCCCchhhhHHHHHHHHHHHhccccCEEeecc--CCCCccccceeeeccccchHHHhhhhhhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999975 23333445667776 799999999999999999999999999
Q ss_pred HHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCCh--
Q 006048 337 FISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGL-- 414 (663)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~~-- 414 (663)
|+.+.+ . ..+..++.||+.|+..+|+++++...+++|+.+..++++..+.++|.+++|+||++++..+..
T Consensus 295 fq~k~~---~-----~~~iesi~Dmk~Fve~YPefkkmSG~VsKHv~lvgEls~lv~~~nL~evSEvEQ~l~c~~~~~~~ 366 (549)
T KOG1299|consen 295 FQFKTK---T-----NSNIESIADMKNFVEDYPEFKKMSGNVSKHVALVGELSKLVQRRNLLEVSEVEQNLACNGDHGAD 366 (549)
T ss_pred HHHhhh---h-----chhhhhHHHHHHHHHhcHHHhhhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCcchhh
Confidence 987432 1 234679999999999999999999999999999999999999999999999999999866543
Q ss_pred -HHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHH---HcCCChhHHHHHHHHHHhcCccccCCCCCCCCC
Q 006048 415 -KDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMK---LARLQSDDITAVNNMRLLGGASDIKKSSTGAFS 490 (663)
Q Consensus 415 -~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq---~~g~~~~~~~~l~~L~~lg~~~~~~~~~~~~~~ 490 (663)
.++.++|. ++.++..|++||+|||+|+|+ ..++.+..++.+ .-|. ..-.++..|.++++...+.. .-|+
T Consensus 367 ~~~i~~LL~-n~~vs~~d~lrLv~lYaLr~e-~~~~~~~~~L~~~l~~~~~--~~~~~v~~ll~~~G~~~R~~---dlf~ 439 (549)
T KOG1299|consen 367 FNDIKKLLQ-NEKVSEIDRLRLVALYALRYE-RHPPNELRQLPQILREQGP--KKPELVPFLLKYAGLHVRQG---DLFG 439 (549)
T ss_pred HHHHHHHHc-CCcccHHHHHHHHHHHHHHhc-cCChHHHHHHHHHHHhcCC--CcchhHHHHHHhcCcccccc---cccC
Confidence 45677777 578999999999999999995 566666655544 3444 23445566666666554221 1122
Q ss_pred cc--cccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCcccccccC
Q 006048 491 LK--FDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRS 568 (663)
Q Consensus 491 ~~--f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~ 568 (663)
.. +. ..+-+-+..++.++.| .+|.|+++++++++.+|+|++..||++....
T Consensus 440 ~~~~v~--i~R~~~kglkgvENVy--tQH~P~lk~~l~~~~rgRl~~~~~p~l~~~~----------------------- 492 (549)
T KOG1299|consen 440 PNDLVP--IARRFIKGLKGVENVY--TQHQPLLKSTLEDLFRGRLKEIDYPFLGSQT----------------------- 492 (549)
T ss_pred cchhHH--HHHHHhhccCcchhhh--hccCHHHHHHHHHHHhcccccCCCccccccc-----------------------
Confidence 21 11 1111112223566666 5999999999999999999888899985210
Q ss_pred CCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhh-cCCeEEEccCcccChhHHHHH
Q 006048 569 RRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRK-LNREIILGSTSLDDPPQFITK 647 (663)
Q Consensus 569 ~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~-~~~~iiigsT~Ii~~~~fl~~ 647 (663)
.+.+++.|||||+||+||+|.+.++++... .|.++++|+|.|+|.+.|+++
T Consensus 493 ----------------------------s~~~pq~IIVfivGGaTYEEa~~V~~~N~tn~g~rvvLgGttvlntk~f~~d 544 (549)
T KOG1299|consen 493 ----------------------------SRDRPQDIIVFIVGGATYEEARVVHELNATNPGVRVVLGGTTVLNTKSFIDE 544 (549)
T ss_pred ----------------------------ccCCCceEEEEEECCccHHHHHHHHHHhcCCCceEEEEcceEEechHHHHHH
Confidence 013578999999999999999999999865 489999999999999999999
Q ss_pred Hhcc
Q 006048 648 MKML 651 (663)
Q Consensus 648 l~~l 651 (663)
+...
T Consensus 545 i~~a 548 (549)
T KOG1299|consen 545 IMAA 548 (549)
T ss_pred Hhcc
Confidence 8753
No 4
>KOG1302 consensus Vacuolar sorting protein VPS33/slp1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.6e-84 Score=692.11 Aligned_cols=559 Identities=19% Similarity=0.322 Sum_probs=453.8
Q ss_pred CCCCchhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCC-CCCCCeEE
Q 006048 11 YGGDYKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQ-PLPSMEAI 89 (663)
Q Consensus 11 ~~~~~~~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~-~~~~~~aI 89 (663)
...++..+++.+++.|+ ++|++++ |.|+||||+.++++|+++.++|.|.+|||..+..++.++. +......|
T Consensus 10 ~~~~l~~lq~~a~~eL~-~lLds~p------G~K~lvlD~dL~~pL~~ia~~s~Lk~hgV~~~~~l~~~~~~~~~~~~~v 82 (600)
T KOG1302|consen 10 ADLNLQGLQEVARRELI-SLLDSLP------GKKELVLDPDLMGPLGLIATASLLKEHGVRRLLHLDAEKSPNSEVKQVV 82 (600)
T ss_pred ccchHHHHHHHHHHHHH-HHHhcCC------CceeEEecccccchhhccccHHHHHHhCcHHhhccCcccCcccccCeEE
Confidence 45778899999999999 7999997 4999999999999999999999999999998888877653 33346799
Q ss_pred EEecCCHHHHHHHHHHhcc--CCCCcceEEEEecCCCCHH--HHHHHHhcCCcccccceeEEEecceeecCCCceeeCCc
Q 006048 90 YFIQPTKENVIMFLSDMSG--RSPLYKKAFVFFSSPISRE--LVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDE 165 (663)
Q Consensus 90 y~i~Pt~~~i~~i~~d~~~--~~~~y~~~~i~Ft~~vp~~--~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~ 165 (663)
||+||+.++++.|++++.+ +...-+.||++| +|+. +|+.+.++.++++.+ .+.|++++++|+|.|++||+.|
T Consensus 83 y~~Rp~~~~~~~ia~~v~~~~~d~~~r~~~vi~---~P~~~~~c~~~Lee~gv~~~v-~~~e~~~~~lpld~DllSlEl~ 158 (600)
T KOG1302|consen 83 YFVRPRLENMQLIAEHVENVQRDGFTRDYHVIF---VPRRSSLCETLLEEEGVYGLV-LVEEQILDLLPLDGDLLSLELP 158 (600)
T ss_pred EEEcCchHHHHHHHHHHhhhhhchhcceeEEEE---eccHHHHHHHHHHhccccccc-ccchhhhhhccccccchhccch
Confidence 9999999999999999974 234678999999 7763 578888889999887 7999999999999999999999
Q ss_pred chhhhhcCCCCCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcC
Q 006048 166 RALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIE 245 (663)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~ 245 (663)
++|.++|.+++ .+.+..+|++|.+++..+|.+|.|+..|+ .|+++++++.+..++..
T Consensus 159 ~~~~d~~~~gd-----~s~l~~va~~l~~LQ~~~G~ip~v~g~G~------------------~ak~~~~l~~~l~~e~~ 215 (600)
T KOG1302|consen 159 NSFLDLYLDGD-----QSSLYHVADALVSLQRLYGIIPKVYGKGE------------------CAKRVWELLKKLEREEA 215 (600)
T ss_pred HHHHHHhhccc-----cchhHHHHHHHHHHHHhhCCCcceeeccH------------------HHHHHHHHHHHHhhccc
Confidence 99999999988 67899999999999999999999999998 56666666666554321
Q ss_pred --CCC-CCCCeeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCC----CC----CCCcceeEecCCCChH
Q 006048 246 --NFP-QTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSK----TG----GPPEKKEVLLEEHDPL 314 (663)
Q Consensus 246 --~~~-~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~----~g----~~~~~k~~~l~~~D~~ 314 (663)
+.+ .+++++||++||++|++||||||+||+|||||+|||++|.|.++.+.. .| +..+++.+.++..|++
T Consensus 216 t~n~~~~~~~~~liLlDR~~D~vtpLlTQltYeGLLDEiy~I~~g~vk~p~~~~~~~q~g~~~~~~~~~~~~l~~~~deI 295 (600)
T KOG1302|consen 216 TENNGDRPEIDHLILLDRDVDPVTPLLTQLTYEGLLDEIYGISSGNVKLPSENFKRNQAGDLGKGKTEKKIVLLYSSDEI 295 (600)
T ss_pred cccCCCccccceEEEEeccCcccchhhhHHHHHHHHHHHhhccCCeEecChHHccchhcCCCccCccccceeccCcHHHH
Confidence 122 246789999999999999999999999999999999999999876431 11 2345677888899999
Q ss_pred HHHhhhCcHHHHHHHHHHHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHH
Q 006048 315 WLELRHAHIADASERLHEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRE 394 (663)
Q Consensus 315 ~~~~R~~h~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~ 394 (663)
|+++|++||+.|++.+++++++++..++. +.+.++++||++||++||.++++++.++.|+++|+.+++.++.
T Consensus 296 y~eiR~k~f~~v~~~lsk~ak~l~~~~~~--------r~~~~sV~Eik~FV~~Lp~L~~~~~~l~~H~~lae~i~~~v~~ 367 (600)
T KOG1302|consen 296 YAEIRNKHFNAVGPLLSKKAKELQAQYET--------RRQAMSVAEIKDFVSKLPKLQQRKKSLERHTNLAEMIMQHVKN 367 (600)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------hhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999986642 3567899999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHhhhhcCCCChHHHHHhhhc--CCCCChhhHHHHHHHHHHhCCCCCChhH----HHHHHHHcCCChhHHHH
Q 006048 395 LRLRELGQLEQDLVFGDAGLKDVVKFFTT--NEDVSRENKLRLLMILAAIYPEKFQGEK----GQNIMKLARLQSDDITA 468 (663)
Q Consensus 395 ~~l~~~~~lEq~i~~g~~~~~~~~~~i~~--~~~~~~~dklRLl~L~~l~~~~gl~~~~----~~~llq~~g~~~~~~~~ 468 (663)
.+|.+++++||+++.|.+..+. .++|++ ....+...+|||+||.|++. +|+++++ +++++|.||+ +++.+
T Consensus 368 ~~f~~~l~lE~ell~~~d~~k~-~~~IeElI~~~~~~~~vLRLicL~Slt~-~Gl~~k~l~~~rr~~lqsYG~--ehl~t 443 (600)
T KOG1302|consen 368 EDFRKLLKLEHELLEGNDSDKD-FDYIEELIYQEVPLNNVLRLICLLSLTC-NGLKPKDLDHYRREYLQSYGY--EHLLT 443 (600)
T ss_pred HHHHHHHHHHHHHHhccCcccc-hHHHHHHHhhcccHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhhhH--HHHHH
Confidence 9999999999999999876544 444443 24789999999999999987 5999865 4788999999 99999
Q ss_pred HHHHHHhcCccccCCCCCCC-CC--ccccc--cccccccc---ccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCc
Q 006048 469 VNNMRLLGGASDIKKSSTGA-FS--LKFDI--NKKRAVRK---DRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPC 540 (663)
Q Consensus 469 l~~L~~lg~~~~~~~~~~~~-~~--~~f~~--k~~~~~~~---~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~ 540 (663)
|.||+++|++..+...+... .. ..|.. +.++++.+ +.+|.|++|+||||+|+++||+|++++...-...|..
T Consensus 444 l~nL~kaGLl~~q~~~~~~~~~~~~~~~st~~ntl~l~~~~~d~~~p~DiaYvySgy~PLs~rlve~~l~~~~w~~~~~~ 523 (600)
T KOG1302|consen 444 LQNLEKAGLLREQTGGRKLHTKSSKRNYSTWANTLPLVDEENDESNPSDIAYVYSGYAPLSCRLVEDLLKRRGWQELYSK 523 (600)
T ss_pred HHHHHHcCCcccccCCCcchhhHHHHHHHHHHhcCCCcCCcccccCcccchhhhcccccHHHHHHHHHhcccchhhhHHH
Confidence 99999999998744221000 00 12333 33444433 4469999999999999999999999997433334433
Q ss_pred ccCCCCCccccccccccCCCcccccccCCCCCCccCCC-CCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHH
Q 006048 541 MNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPR-NSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRV 619 (663)
Q Consensus 541 i~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~-~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~a 619 (663)
+...+ |..... .+|.... .++ +.++ ...+.++|||+|||||+||+|
T Consensus 524 i~~l~----g~~~e~----------------~~~~~~~~~~~----------~~~~---g~~R~~lVff~GG~T~~EIAa 570 (600)
T KOG1302|consen 524 IRNLP----GPHFEE----------------VTWTPSDIASK----------NNSP---GALRVTLVFFLGGCTYAEIAA 570 (600)
T ss_pred HccCC----CCchhh----------------cccChhhhccc----------ccCC---CCcceEEEEEECCccHHHHHH
Confidence 32211 110000 0111000 000 0000 136889999999999999999
Q ss_pred HHHHHhhcCCeEEEccCcccChhHHHHHH
Q 006048 620 CHKLTRKLNREIILGSTSLDDPPQFITKM 648 (663)
Q Consensus 620 l~~L~~~~~~~iiigsT~Ii~~~~fl~~l 648 (663)
+|+|++..|++|+|+||+++||.++|+.+
T Consensus 571 lr~l~~~~~~~f~i~Tt~ling~~ll~~~ 599 (600)
T KOG1302|consen 571 LRFLAKLEGYRFLIATTGLINGSSLLEAI 599 (600)
T ss_pred HHHHHhhcCceEEEEeccccchHHHHHhh
Confidence 99999999999999999999999999976
No 5
>COG5158 SEC1 Proteins involved in synaptic transmission and general secretion, Sec1 family [Intracellular trafficking and secretion]
Probab=100.00 E-value=3.5e-83 Score=694.30 Aligned_cols=566 Identities=25% Similarity=0.424 Sum_probs=447.6
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecCC
Q 006048 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (663)
Q Consensus 16 ~~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt 95 (663)
.++++.++++|+ +++..|.+ ...|||||+|+.+..|||+|+++++|++|||+++++|+++|+|.++.+|||||+||
T Consensus 2 ~dl~e~q~~~i~-~~i~~v~~---~n~~KvLllD~~t~~ils~~~~~s~lle~~I~~~~~i~~~R~~~~~~~aiy~v~pt 77 (582)
T COG5158 2 MDLLELQKNKIL-DEIFLVQP---ANIWKVLLLDKDTTSILSSLITTSELLEHGITLVDLIENKREPISDLPAIYFVRPT 77 (582)
T ss_pred ccHHHHHHHHHH-HHHHhcCC---CcceEEEEEecchHHHHHhhcchHHHHhcCceEEEeecCCCCCCCCCCEEEEEcCc
Confidence 368999999999 58888863 34699999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcCCC
Q 006048 96 KENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE 175 (663)
Q Consensus 96 ~~~i~~i~~d~~~~~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~ 175 (663)
.+++++|++|+.+..|.|..||+.|++.++..+++.+++ .++...|.+|.++++||+++|+++|++++|..|..++.+.
T Consensus 78 ~e~i~~i~~D~~~~~~~Y~~~~~~f~~~~~~~l~e~l~e-s~~~~~i~~V~e~~ldf~~le~dlfsl~~p~~~~~~~~~~ 156 (582)
T COG5158 78 KENIDLILEDLEQWDPFYLNYHISFLNTVTESLLELLAE-SGVFEKILSVYEIYLDFFVLESDLFSLNLPESFLESSLPS 156 (582)
T ss_pred hHHHHHHHHHHhccCccccceeEEecccchHHHHHHHhh-cCchhheeeeeeeecceEEechHhHhhcCchhhhhhcCCC
Confidence 999999999997656899999999999999999998886 5788889999999999999999999999999998888764
Q ss_pred CCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCC---CCCC
Q 006048 176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---QTET 252 (663)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~---~~~~ 252 (663)
. ...+-.|+++|+++|.++|.+|.|||.++. .|.++|+++-..+........++. .+.+
T Consensus 157 ~-----~~~~~~~v~gl~S~~~slg~~P~Ir~~~~~-------------~a~~~ak~l~~~~~~~~~~~~~~~~~~~~~~ 218 (582)
T COG5158 157 T-----TEALIKIVNGLFSLCVSLGRIPIIRYSGGK-------------NAEHMAKKLSDEIRNELSINFDGVVSKNPLR 218 (582)
T ss_pred c-----hHHHHHHHhhHHHHHhhcCCcceEEecCCc-------------hHHHHHHHHHHHHHHHHHhhcccccccCCCC
Confidence 3 234558999999999999999999998863 355555555444442222222221 1247
Q ss_pred eeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHHHH
Q 006048 253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE 332 (663)
Q Consensus 253 ~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~~ 332 (663)
++|||+||+.|++|||+|+||||||+||+++|++|.|.++.....| +++|...++.+|+||.++||+||++|++.|.+
T Consensus 219 ~~LIIlDRs~D~iTPlLh~wTYqaml~Dl~~~~~~~v~~~~~~~~g--~~kk~~~~~~~D~~w~~~k~~~f~~v~e~l~~ 296 (582)
T COG5158 219 PILIILDRSLDPITPLLHQWTYQAMLHDLLGINNNIVTIPSSSVNG--PEKKFSLSDKDDPFWNDNKFLNFGEVGEKLKK 296 (582)
T ss_pred ceEEEEecCCCcccchHHHHHHHHHHHHHHHhhcCeEEeccccccc--ccceeccCCcccHhHHHhccCchhhHHHHHHH
Confidence 8999999999999999999999999999999999999998654544 55666777889999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCC
Q 006048 333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA 412 (663)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~ 412 (663)
.+++|+.+++. +. .....++.||++||.+||++++.++.|.+|++|+++|+++++++.|.++.++||++.++.+
T Consensus 297 ~~~~l~~~~~~--~~----~~~~~s~~dik~~v~~lpel~~~~~~l~~H~~l~~e~l~~~~~~~l~~f~eIEq~l~~~~~ 370 (582)
T COG5158 297 LAKELKTKAQL--RH----KENAKSVNDIKEFVDKLPELQKRSRSLNKHLTLASELLKVVEERYLDDFSEIEQNLSTGND 370 (582)
T ss_pred HHHHHHHHHhh--hh----hhhcccHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence 99999986642 22 1234799999999999999999999999999999999999999999999999999998875
Q ss_pred ChH---HHHHhhhcCCCCChhhHHHHHHHHHHhCCCCC-ChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCCC---
Q 006048 413 GLK---DVVKFFTTNEDVSRENKLRLLMILAAIYPEKF-QGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKSS--- 485 (663)
Q Consensus 413 ~~~---~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl-~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~~--- 485 (663)
... +++++++. +....+||||+|||+++. +|+ .+.+..+++..-|++.+++..+.+|..+|.+..+....
T Consensus 371 ~~~~i~Dli~~l~~--~~~E~~klRllilysL~~-~~~~~~~~~~~~l~~~~~~~e~~~~~~~l~~~~~~~~~~~~~~s~ 447 (582)
T COG5158 371 VKSDISDLIELLES--GVEEDDKLRLLILYSLTK-DGLIKDIDELRLLRIQGYGIEALNFFQRLKELGFLTLKDSKTISL 447 (582)
T ss_pred chhhHHHHHHHHhc--CchHHHHHHHHHHHHHhc-CcchhHHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhhccccccc
Confidence 433 44445542 223336999999999998 463 33344566666777779999999999999874422110
Q ss_pred -CCCCCccccc-ccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCccc
Q 006048 486 -TGAFSLKFDI-NKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVA 563 (663)
Q Consensus 486 -~~~~~~~f~~-k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~ 563 (663)
.|.....|+. ......+..+...+..+++++|.|..+++...++.+.+.+..++.+..
T Consensus 448 ~~g~~d~l~~~~n~y~~s~~~~~~~~~~~v~~~~iP~~k~~~~~~~~~~~~~~~~s~~~~-------------------- 507 (582)
T COG5158 448 KRGDKDSLFQWFNTYSLSREHQGVPDLENVYSGLIPLKKDIPIDLLVRRLFEPLKSSQQQ-------------------- 507 (582)
T ss_pred ccCCcccccCcccccccccccCCCchHHHHHHhhcchhcccchhhhhhhhcccccchhcc--------------------
Confidence 0110001110 011111111345678889999999999999999998765434332220
Q ss_pred ccccCCCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhcC-CeEEEccCcccChh
Q 006048 564 HSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLN-REIILGSTSLDDPP 642 (663)
Q Consensus 564 ~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~-~~iiigsT~Ii~~~ 642 (663)
+.+..+ +.| +.+. . ...++++++|||+||+||.|++++++++++.| ++|++|||.|+||.
T Consensus 508 -s~~~~~-~k~-~~~~-~---------------~~~~~~~~~VfviGG~ty~E~~~~~e~~~~~~~~~ii~Gst~iltp~ 568 (582)
T COG5158 508 -SLRLSR-PKG-RSRS-N---------------KKIPQQRILVFVIGGVTYEELRVLYELNESQNSVRIIYGSTEILTPA 568 (582)
T ss_pred -ceeecc-ccc-cccc-c---------------cccccceEEEEEECCeehHHHHHHHHHHhhcCCeeEEEcCCceecHH
Confidence 111111 112 1110 0 01367899999999999999999999999998 99999999999999
Q ss_pred HHHHHHhccCCC
Q 006048 643 QFITKMKMLTVD 654 (663)
Q Consensus 643 ~fl~~l~~l~~~ 654 (663)
+||+++..++..
T Consensus 569 e~l~~v~~~~~~ 580 (582)
T COG5158 569 EFLDEVKRLGGS 580 (582)
T ss_pred HHHHHHHHhccc
Confidence 999999988754
No 6
>KOG1301 consensus Vesicle trafficking protein Sly1 (Sec1 family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.3e-81 Score=647.41 Aligned_cols=569 Identities=23% Similarity=0.399 Sum_probs=448.7
Q ss_pred CchhHHHHHHHHHHHHHHHhc----cCCCC-CCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeE
Q 006048 14 DYKNFKQISRERLLYEMLRSA----KTGTS-KSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEA 88 (663)
Q Consensus 14 ~~~~l~~~~r~~l~~~~l~~v----~~~~~-~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~a 88 (663)
...+||+.+-..|. .||+-= +.+.. ++-|||||+|..+..|||++++++||++||||++.+|.+.|+|+|+++|
T Consensus 8 ~~~slRe~Qi~al~-~mlnLN~~~~~~~~~~epvWKVLI~Dr~gq~iISpll~VkeLRe~GvTlH~li~~dR~Pi~DVPA 86 (621)
T KOG1301|consen 8 AAASLRERQIVALK-KMLNLNKPVNKNGTAAEPVWKVLILDRFGQDIISPLLRVKELREHGITLHLLITSDRDPIPDVPA 86 (621)
T ss_pred hhhhHHHHHHHHHH-HHHHhcCCccccccccCCceEEEEEecccchhhcccccHHHHHhcCcEEEEeeccccCCCCCCCe
Confidence 35678888888887 577421 11222 6779999999999999999999999999999999999999999999999
Q ss_pred EEEecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---cCCcccccceeEEEecceeecCCCceeeCCc
Q 006048 89 IYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLEYFAIDSQGFVTDDE 165 (663)
Q Consensus 89 Iy~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~Ft~~vp~~~le~la~---~~~~~~~i~~i~e~~ldfipld~dlfsl~~~ 165 (663)
||||+||.+|+++|++|+++ ..|.+||++|++++||..+|.||. +.|...+|++|++.++|||.+|+|+|+|.++
T Consensus 87 VYFV~Pt~eNid~i~~Dl~~--~lY~~~ylNF~Ssi~R~~LE~lA~~a~~~g~v~~I~kVyDQYlnFI~LEddlFsL~~~ 164 (621)
T KOG1301|consen 87 VYFVSPTEENIDRIIQDLSK--GLYDSYYLNFISSISRSLLEDLASAASETGAVLQIHKVYDQYLNFIVLEDDLFSLGMQ 164 (621)
T ss_pred EEEeCCchHhHHHHHHHHHH--hhhhhheeeccccccHHHHHHHHHHHhhcchHHHHHHHHHhHhhheeecchhhhhccc
Confidence 99999999999999999975 699999999999999999999984 4688889999999999999999999999999
Q ss_pred chhhhhcCCCCCccchhHHHHHHHHHHHHHHHHhCCccEEEE-ccCCCccccccccccchHHHHHHHHHHHHHHHhhhhc
Q 006048 166 RALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRY-RAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSI 244 (663)
Q Consensus 166 ~~~~~l~~~~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~-~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~ 244 (663)
++|..+..++..+...+..+++||++|+++|.++|.+|.||| +|+ .++++|++|-+++.+.+-..++..
T Consensus 165 ~~~~~~n~p~t~e~ei~~~~~~IvdgLF~v~vTlG~VPiIRcp~g~----------aAEmvA~kL~qKLRd~l~d~k~~l 234 (621)
T KOG1301|consen 165 NSFHAINRPSTTEEEINALMDRIVDGLFSVFVTLGEVPIIRCPKGG----------AAEMVARKLDQKLRDNLRDTKNNL 234 (621)
T ss_pred ccchhccCCCchHHHHHHHHHHHHHHHHHHheecccceeEECCCCC----------HHHHHHHHHHHHHHHHhHhhcccc
Confidence 999888887766666788999999999999999999999999 444 247888888888888886555433
Q ss_pred CCC----CCCCCeeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhh
Q 006048 245 ENF----PQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRH 320 (663)
Q Consensus 245 ~~~----~~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~ 320 (663)
... ...++|+|+|+||++|++||+-|.||||||+||+|+++.|.|+++.+. ++..+|.+.|+.+|.||..+.+
T Consensus 235 ft~~~~~~~~~RPvLvl~DRn~Dlat~l~HtWtYqaLvhDvl~l~lN~vtv~~~~---~~~~~k~yDld~~D~fW~~n~~ 311 (621)
T KOG1301|consen 235 FTMDGGGAGFQRPVLVLLDRNIDLATPLHHTWTYQALVHDVLDLELNRVTLESES---KRKKKKSYDLDPNDKFWRRNKG 311 (621)
T ss_pred eeccCcccCCCCceEEEEecccccccccccceehHHHHHHHHhcccceEEeeccc---cCCCCccccCCCccHHHHhcCC
Confidence 211 123689999999999999999999999999999999999999998643 2345688999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHHhHHHHhhh--cc---c---CCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHH
Q 006048 321 AHIADASERLHEKMTSFISKNKAAQIQH--SA---R---DGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKII 392 (663)
Q Consensus 321 ~h~~~v~~~l~~~~~~~~~~~~~~~~~~--~~---~---~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~ 392 (663)
..|++|++.+.+++.+|+.+. +++++ |. . .+..++...++++|++||++.++++.+++|++||.++++.|
T Consensus 312 ~pFP~VAE~Ve~eL~~Yk~~~--~ei~r~~G~sg~~e~~~~~~~Dtt~l~~aV~sLPEL~ekK~~ID~HtnIatalL~~I 389 (621)
T KOG1301|consen 312 SPFPEVAENVEEELESYKNEE--AEIKRKMGLSGEDEGAIDELNDTTKLQSAVSSLPELTEKKRLIDLHTNIATALLEQI 389 (621)
T ss_pred CCCchHHHHHHHHHHHHHhhH--HHHHhhcCCCcccccccccccchHHHHHHHHHhHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 999999999999999998653 45553 11 1 11123445999999999999999999999999999999999
Q ss_pred HHHhHHHHHHHHhhhhcCCCChHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHH---HHHHHHcCCChhHHHHH
Q 006048 393 RELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKG---QNIMKLARLQSDDITAV 469 (663)
Q Consensus 393 ~~~~l~~~~~lEq~i~~g~~~~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~---~~llq~~g~~~~~~~~l 469 (663)
++|+|+.++++|+++.+ ......+++.+.+....+++||||++++|.++.. -++..+. +..++..|++...+..+
T Consensus 390 keR~lD~ff~~E~~~~~-~~l~~~~l~~~~~~~~gt~EDkLR~~Ii~~ls~e-t~~~s~le~~e~al~e~~~d~~Al~yv 467 (621)
T KOG1301|consen 390 KERKLDDFFEVEKKIMS-TTLDRSLLDILEDGEAGTPEDKLRLFIIYYLSTE-TVPQSDLEAVENALTEAGCDLNALKYV 467 (621)
T ss_pred HHhhhhHHHHHhccccc-ccccHHHHHHHhcccCCChHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHhcCCchHHHHHH
Confidence 99999999999999987 3333567787775567899999999999999975 4445444 45677889987777777
Q ss_pred HHHHHhcCccccCCCCCCCCC-------------ccccc-ccccccccccCCCCcccccccccHHHHHHHHHHhcCCC--
Q 006048 470 NNMRLLGGASDIKKSSTGAFS-------------LKFDI-NKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKREL-- 533 (663)
Q Consensus 470 ~~L~~lg~~~~~~~~~~~~~~-------------~~f~~-k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l-- 533 (663)
.++..+.-.........+.-+ ..|-. -.++++.+ + .-. .+.++||.+...+-
T Consensus 468 kr~k~~~~~~s~~~~~~~~~t~~~~~~~kl~~qg~~~vm~GVKNLlp~-----~------q~l-PvT~iveal~~~~sn~ 535 (621)
T KOG1301|consen 468 KRLKEITKMSSATSAYSGTTTKIVDLFEKLYSQGSSFVMEGVKNLLPK-----K------QNL-PVTRIVEALMDPKSNP 535 (621)
T ss_pred HHHHHHhhcccccccccCCcccHHHHHHHHhhccHHHHHhhHHhcCcc-----c------ccC-cHHHHHHHhhCCCCCc
Confidence 776654332221111001100 01111 01112111 1 112 26899999987653
Q ss_pred CCCCCCcccCCCCCccccccccccCCCcccccccCCCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcC
Q 006048 534 PKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGAT 613 (663)
Q Consensus 534 ~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvT 613 (663)
..++|.|++ |+.. .|++ ...... +.+.++.|||||||.+
T Consensus 536 etddYl~~D-Pk~~-k~~~-----------~~~~~~----------------------------r~~f~eaIVFvVGGGN 574 (621)
T KOG1301|consen 536 ETDDYLYFD-PKLS-KGGS-----------SSLPIK----------------------------RQPFQEAIVFVVGGGN 574 (621)
T ss_pred cccceEeec-cccc-cCCC-----------cccccc----------------------------ccchhheEEEEEcCcC
Confidence 345577776 3321 1100 000000 1246799999999999
Q ss_pred HHHHHHHHHHHhhcC--CeEEEccCcccChhHHHHHHhccCCCC
Q 006048 614 RSELRVCHKLTRKLN--REIILGSTSLDDPPQFITKMKMLTVDE 655 (663)
Q Consensus 614 ysEi~al~~L~~~~~--~~iiigsT~Ii~~~~fl~~l~~l~~~~ 655 (663)
|-|+..|.++.++.+ ++||+|+|.|+||.+|++++..||.+-
T Consensus 575 YiEYqnL~d~~krq~~~krIiYGsTeIln~~eFl~qls~Lg~~~ 618 (621)
T KOG1301|consen 575 YIEYQNLVDLAKRQQTVKRIIYGSTEILNAREFLEQLSRLGLKM 618 (621)
T ss_pred eeehhhHHHHHHhhcccceeEecchhcCCHHHHHHHHHHhcccc
Confidence 999999999998753 799999999999999999999998653
No 7
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=48.08 E-value=21 Score=35.24 Aligned_cols=43 Identities=12% Similarity=0.432 Sum_probs=33.1
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHhc
Q 006048 604 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM 650 (663)
Q Consensus 604 viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~~ 650 (663)
..|.+.||+|-..++.+.. .|.++++.++.|++.++....++.
T Consensus 171 ~~i~v~GGI~~~nv~~l~~----~GaD~vvvgSai~~~~d~~~~~~~ 213 (220)
T PRK05581 171 ILIEVDGGINADNIKECAE----AGADVFVAGSAVFGAPDYKEAIDS 213 (220)
T ss_pred ceEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHHH
Confidence 5677889999976666655 589999999999987776555443
No 8
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=43.08 E-value=26 Score=34.95 Aligned_cols=45 Identities=13% Similarity=0.296 Sum_probs=33.0
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHhcc
Q 006048 603 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 651 (663)
Q Consensus 603 ~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~~l 651 (663)
.+.|.+.||||-..++.+.+ .|.++++.++.|...+++-+.++.+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~----aGAd~vVvGSaIf~~~d~~~~i~~l 211 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAE----AGADMFVAGSAIFGQPDYKAVIDEM 211 (220)
T ss_pred CeeEEEECCCCHHHHHHHHH----cCCCEEEEeHHHhCCCCHHHHHHHH
Confidence 47788899999776665554 4899999999998665554444433
No 9
>PLN02334 ribulose-phosphate 3-epimerase
Probab=41.36 E-value=25 Score=35.30 Aligned_cols=44 Identities=14% Similarity=0.278 Sum_probs=33.3
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHhcc
Q 006048 604 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 651 (663)
Q Consensus 604 viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~~l 651 (663)
+-|.++||+|-.-++.+... |.++++.++.|+..++.-+.++.+
T Consensus 175 ~~I~a~GGI~~e~i~~l~~a----Gad~vvvgsai~~~~d~~~~~~~l 218 (229)
T PLN02334 175 LDIEVDGGVGPSTIDKAAEA----GANVIVAGSAVFGAPDYAEVISGL 218 (229)
T ss_pred CcEEEeCCCCHHHHHHHHHc----CCCEEEEChHHhCCCCHHHHHHHH
Confidence 45899999998877777654 889999999999776665554433
No 10
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=38.60 E-value=32 Score=32.88 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=32.6
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHhcc
Q 006048 603 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 651 (663)
Q Consensus 603 ~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~~l 651 (663)
.+-|++.||++-..+..+.. .|.+.+..++.+....+....+..+
T Consensus 150 ~~pv~a~GGi~~~~i~~~~~----~Ga~~i~~g~~i~~~~~~~~~~~~l 194 (196)
T cd00564 150 EIPVVAIGGITPENAAEVLA----AGADGVAVISAITGADDPAAAAREL 194 (196)
T ss_pred CCCEEEECCCCHHHHHHHHH----cCCCEEEEehHhhcCCCHHHHHHHH
Confidence 35588999999766665554 4899999999898766665555443
No 11
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=33.08 E-value=39 Score=33.01 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=30.8
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHh
Q 006048 604 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 649 (663)
Q Consensus 604 viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~ 649 (663)
+-|+..||||-..++.+.. .|.+.+++++.|.+..+..+.+.
T Consensus 161 ~~v~a~GGI~~~~i~~~~~----~Ga~gv~~gs~i~~~~d~~~~~~ 202 (212)
T PRK00043 161 IPIVAIGGITPENAPEVLE----AGADGVAVVSAITGAEDPEAAAR 202 (212)
T ss_pred CCEEEECCcCHHHHHHHHH----cCCCEEEEeHHhhcCCCHHHHHH
Confidence 6789999999766665544 48999998899987655544443
No 12
>PF14071 YlbD_coat: Putative coat protein
Probab=31.03 E-value=46 Score=29.93 Aligned_cols=14 Identities=43% Similarity=0.895 Sum_probs=12.5
Q ss_pred EecCCCChHHHHhh
Q 006048 306 VLLEEHDPLWLELR 319 (663)
Q Consensus 306 ~~l~~~D~~~~~~R 319 (663)
++|.++|++|..+|
T Consensus 32 ~LlGEdD~~W~~Yk 45 (124)
T PF14071_consen 32 YLLGEDDPIWDPYK 45 (124)
T ss_pred HHhCCCcchHHHhh
Confidence 56789999999999
No 13
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=30.51 E-value=55 Score=31.65 Aligned_cols=42 Identities=12% Similarity=0.078 Sum_probs=31.4
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHh
Q 006048 604 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 649 (663)
Q Consensus 604 viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~ 649 (663)
+-|+.+||+|-..++.+. ..|.+.+.+++.|...++-...++
T Consensus 153 ~pv~a~GGI~~~~~~~~~----~~G~~gva~~~~i~~~~dp~~~~~ 194 (196)
T TIGR00693 153 IPIVAIGGITLENAAEVL----AAGADGVAVVSAIMQAADPKAAAK 194 (196)
T ss_pred CCEEEECCcCHHHHHHHH----HcCCCEEEEhHHhhCCCCHHHHHH
Confidence 448999999976666544 348999999999998766555544
No 14
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=29.81 E-value=61 Score=31.57 Aligned_cols=44 Identities=14% Similarity=0.378 Sum_probs=32.3
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHhcc
Q 006048 604 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKML 651 (663)
Q Consensus 604 viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~~l 651 (663)
+-|++.||+|-.. +.++. +.|.+.++.++.|+++.+.-..++.+
T Consensus 166 ~~i~v~GGI~~en---v~~l~-~~gad~iivgsai~~~~d~~~~~~~~ 209 (210)
T TIGR01163 166 ILIEVDGGVNDDN---ARELA-EAGADILVAGSAIFGADDYKEVIRSL 209 (210)
T ss_pred ceEEEECCcCHHH---HHHHH-HcCCCEEEEChHHhCCCCHHHHHHHh
Confidence 5578999999654 44433 45899999999999888776665543
No 15
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=25.24 E-value=86 Score=30.46 Aligned_cols=43 Identities=9% Similarity=0.295 Sum_probs=31.8
Q ss_pred EEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHhc
Q 006048 604 IFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM 650 (663)
Q Consensus 604 viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~~ 650 (663)
+-|++.||+|-.-++.+. +.|.+.++.++.|++..+....++.
T Consensus 167 ~pi~v~GGI~~env~~~~----~~gad~iivgsai~~~~~~~~~~~~ 209 (211)
T cd00429 167 LLIEVDGGINLETIPLLA----EAGADVLVAGSALFGSDDYAEAIKE 209 (211)
T ss_pred eEEEEECCCCHHHHHHHH----HcCCCEEEECHHHhCCCCHHHHHHH
Confidence 567899999975544443 3488999999999988777666554
No 16
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=24.15 E-value=72 Score=32.01 Aligned_cols=43 Identities=9% Similarity=0.219 Sum_probs=32.3
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHh
Q 006048 603 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 649 (663)
Q Consensus 603 ~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~ 649 (663)
.+.+-|-||||-..+..+.. .|.+++|.|+.|+..++.-+.+.
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~----aGad~iVvGsaI~~a~d~~~~~~ 215 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAAD----AGANVIVAGSSIFKAKDRKQAIE 215 (228)
T ss_pred cCeEEECCCCCHHHHHHHHH----cCCCEEEEchHHhCCCCHHHHHH
Confidence 46688899999987776655 38999999999987655544443
No 17
>PF12327 FtsZ_C: FtsZ family, C-terminal domain; InterPro: IPR024757 The FtsZ family of proteins are involved in polymer formation. FtsZ is the polymer-forming protein of bacterial cell division. It is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ is a GTPase, like tubulin []. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria and archaea []. This entry represents a domain of FtsZ. In most FtsZ proteins is found in the C terminus, except in some alphaproteobacteria proteins where there is an extension C-terminal domain TIGR03483 from TIGRFAMs.; PDB: 2RHO_B 2RHJ_A 2VXY_A 2RHL_B 2RHH_A 2VAM_A 1W5F_B 2R75_1 2R6R_1 1RQ7_A ....
Probab=22.84 E-value=1.4e+02 Score=25.43 Aligned_cols=37 Identities=27% Similarity=0.409 Sum_probs=26.2
Q ss_pred CCceEEEEEEcC--cCHHHHHHHH-HHHhhc--CCeEEEccC
Q 006048 600 MGQRIFVFIVGG--ATRSELRVCH-KLTRKL--NREIILGST 636 (663)
Q Consensus 600 ~~~~viVfviGG--vTysEi~al~-~L~~~~--~~~iiigsT 636 (663)
.-+.++|-|.|| +|+.|+..+- .+.+.. +.+|++|.+
T Consensus 35 ~A~~vLvni~~~~d~~l~ev~~~~~~i~~~~~~~a~ii~G~~ 76 (95)
T PF12327_consen 35 GAKGVLVNITGGPDLSLSEVNEAMEIIREKADPDANIIWGAS 76 (95)
T ss_dssp G-SEEEEEEEE-TTS-HHHHHHHHHHHHHHSSTTSEEEEEEE
T ss_pred HhceEEEEEEcCCCCCHHHHHHHHHHHHHHhhcCceEEEEEE
Confidence 357899999997 7899998764 555554 578888865
No 18
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=22.83 E-value=88 Score=30.47 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=29.5
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHH
Q 006048 603 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKM 648 (663)
Q Consensus 603 ~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l 648 (663)
.+.|.+.||+|..-+..+. +.|.+.++.++.|++.++.-+.+
T Consensus 158 ~~~i~v~GGI~~~n~~~~~----~~Ga~~v~vGsai~~~~d~~~~~ 199 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVI----KLGPDIVIVGGAITKAADPAEAA 199 (206)
T ss_pred CCcEEEECCcCHHHHHHHH----HcCCCEEEEeehhcCCCCHHHHH
Confidence 3456778999988776543 35899888888899755543333
No 19
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=22.43 E-value=1.1e+02 Score=30.72 Aligned_cols=44 Identities=11% Similarity=0.268 Sum_probs=33.1
Q ss_pred ceEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHh
Q 006048 602 QRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 649 (663)
Q Consensus 602 ~~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~ 649 (663)
..+.+-|=|||+-.-++.+.+ .|.+++|+|+.|...++.-+.++
T Consensus 170 ~~~~IeVDGGI~~eti~~l~~----aGaDi~V~GSaiF~~~d~~~~~~ 213 (223)
T PRK08745 170 KPIRLEIDGGVKADNIGAIAA----AGADTFVAGSAIFNAPDYAQVIA 213 (223)
T ss_pred CCeeEEEECCCCHHHHHHHHH----cCCCEEEEChhhhCCCCHHHHHH
Confidence 358899999999887766655 38999999999986555444443
No 20
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=21.68 E-value=1.1e+02 Score=29.55 Aligned_cols=44 Identities=14% Similarity=0.231 Sum_probs=31.3
Q ss_pred ceEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHh
Q 006048 602 QRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMK 649 (663)
Q Consensus 602 ~~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~ 649 (663)
..+.|.+.|||+..- +.++. +.|.+.++.++.|+..++.-+.++
T Consensus 157 ~~~~i~~~GGI~~~~---i~~~~-~~Gad~vvvGsai~~~~d~~~~~~ 200 (202)
T cd04726 157 LGVKVAVAGGITPDT---LPEFK-KAGADIVIVGRAITGAADPAEAAR 200 (202)
T ss_pred cCCCEEEECCcCHHH---HHHHH-hcCCCEEEEeehhcCCCCHHHHHh
Confidence 357789999999543 33333 348999999999987776655544
No 21
>PRK10039 hypothetical protein; Provisional
Probab=20.70 E-value=1.8e+02 Score=26.26 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=28.2
Q ss_pred EcCcCHHHHHHHHHHHhhcC----CeEEE-ccCcccChhHHHHHHh
Q 006048 609 VGGATRSELRVCHKLTRKLN----REIIL-GSTSLDDPPQFITKMK 649 (663)
Q Consensus 609 iGGvTysEi~al~~L~~~~~----~~iii-gsT~Ii~~~~fl~~l~ 649 (663)
=||.|--|.|+++||....+ +.+++ ..+.-++-.+.++.+.
T Consensus 80 EGGlS~VE~R~l~Ela~ga~~~~~~~v~~~~~~~pLsD~evi~~~~ 125 (127)
T PRK10039 80 EGGLSQVEERILIELAVGSTPKGYRQLYIHPQSVPLSDSAVIQIIK 125 (127)
T ss_pred CCCccHHHHHHHHHHHhhhcccccceEEEeCCCCcCCHHHHHHHHh
Confidence 39999999999999987653 23444 4444566666666554
Done!