Query 006048
Match_columns 663
No_of_seqs 163 out of 972
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 14:34:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006048.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006048hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dn1_A NSEC1, syntaxin binding 100.0 1E-106 4E-111 916.5 50.5 573 16-655 4-589 (594)
2 3puk_A Syntaxin-binding protei 100.0 7E-106 2E-110 909.5 43.1 569 15-659 7-590 (592)
3 2xhe_A UNC18; exocytosis, exoc 100.0 7E-104 2E-108 906.7 55.8 600 17-655 3-619 (650)
4 3c98_A Syntaxin-binding protei 100.0 2E-104 8E-109 906.4 51.0 574 15-655 15-601 (606)
5 1epu_A S-SEC1; parallel beta-s 100.0 7E-104 3E-108 900.3 50.3 575 17-653 2-590 (591)
6 1mqs_A SLY1 protein, SLY1P; SM 100.0 1.4E-92 4.6E-97 814.9 41.3 579 14-655 15-665 (671)
7 1y9j_A SEC1 family domain cont 100.0 1.2E-28 4E-33 228.7 10.9 133 16-151 20-159 (159)
8 3he4_B Synzip5; heterodimeric 36.8 49 0.0017 22.0 3.9 32 356-387 3-34 (46)
9 1tqx_A D-ribulose-5-phosphate 26.5 37 0.0013 32.6 3.1 38 603-644 173-210 (227)
10 1y0e_A Putative N-acetylmannos 21.1 74 0.0025 29.9 4.1 44 603-650 175-219 (223)
11 1h1y_A D-ribulose-5-phosphate 20.6 38 0.0013 32.3 1.9 38 603-644 173-210 (228)
No 1
>1dn1_A NSEC1, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3puj_A 3c98_A
Probab=100.00 E-value=1e-106 Score=916.51 Aligned_cols=573 Identities=30% Similarity=0.561 Sum_probs=476.0
Q ss_pred hhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecCC
Q 006048 16 KNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPT 95 (663)
Q Consensus 16 ~~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt 95 (663)
-+|++++|++|+++||++++. .++|||||+|+.+++|||+||++++|+++||++++.|+..|+|+|+++|||||+||
T Consensus 4 ~~lk~~~~~~l~~~~l~~~~~---~~~~KvLilD~~t~~ils~~~~~s~Ll~~gVtlve~i~~~R~~~~~~~aIYfv~Pt 80 (594)
T 1dn1_A 4 IGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITPS 80 (594)
T ss_dssp CCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEETTSCCCCCTTSEEEEEECCC
T ss_pred hhHHHHHHHHHHHHHHhhccc---CCCCEEEEECcccHHHHHHHhCHHHHhhCCeEEEEecccccCCCCCCceEEEEeCC
Confidence 479999999999889999853 35799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcc-CCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcCC
Q 006048 96 KENVIMFLSDMSG-RSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGD 174 (663)
Q Consensus 96 ~~~i~~i~~d~~~-~~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~ 174 (663)
.+||++|++||++ ..++|++|||||++.+|+.+++.||+ .++.+.|+++.|+++||+|+|+|+|||++|++|..+|.+
T Consensus 81 ~~ni~~i~~d~~~~~~~~Y~~y~i~Ft~~~~~~~le~La~-~~~~~~i~~v~e~~ldfiple~dlFsL~~p~~f~~l~~~ 159 (594)
T 1dn1_A 81 EKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYSP 159 (594)
T ss_dssp HHHHHHHHHTTSSGGGCCCSEEEEEESSCCCHHHHHHHHH-SGGGGTEEEEEECCCCSEEEETTEEECCCTTHHHHHHCG
T ss_pred HHHHHHHHHHHhcccccccceEEEEeCCCCCHHHHHHHHh-cchHhhhcchheeeeeeEEccCCEEEecCcchHHHHhCC
Confidence 9999999999974 23799999999999999999999996 478999999999999999999999999999999999986
Q ss_pred CCCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCC---CCC
Q 006048 175 EENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFP---QTE 251 (663)
Q Consensus 175 ~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~---~~~ 251 (663)
..+ .+....++++|++|+++|.++|.+|.|||+|+. ..|+++|+.|++.|.++...+++++ ..+
T Consensus 160 ~~~-~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~------------~~~~~lA~~v~~~l~~~~~~~~~~~~~~~~~ 226 (594)
T 1dn1_A 160 HKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDKA 226 (594)
T ss_dssp GGT-TSHHHHHHHHHHHHHHHHHHHTCCCEECCCTTS------------HHHHHHHHHHHHHHHHHHTTCTTTTCSTTGG
T ss_pred ccc-ccchHHHHHHHHHHHHHHHHcCCCCEEEECCCc------------hHHHHHHHHHHHHHHHhhccCccccCCCCCC
Confidence 432 234678999999999999999999999999874 2478899999999988765544432 234
Q ss_pred CeeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHHH
Q 006048 252 TCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLH 331 (663)
Q Consensus 252 ~~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~ 331 (663)
+++|||+||++|++|||+||||||||+||+|||++|+|+++.+. .+..++|++.|+++|+||.++||+||++|++.|.
T Consensus 227 ~~~LiIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~ 304 (594)
T 1dn1_A 227 RSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEVT 304 (594)
T ss_dssp GCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECS--SSSCEEEEEECSTTCHHHHHHTTSBHHHHHHHHH
T ss_pred CCeEEEEcCCccccccccccccHHHHHHHHhcccCCEEEecCCC--CCCccceEEecCCCCHHHHHHhccCHHHHHHHHH
Confidence 78999999999999999999999999999999999999998632 1234568899999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCC
Q 006048 332 EKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGD 411 (663)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~ 411 (663)
+++++|+++++.. ..+..+++||++||++||+++++++.+++|++||++|++.+++ .|++++++||+|++|.
T Consensus 305 ~~~~~~~~~~~~~-------~~~~~s~~dl~~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g~ 376 (594)
T 1dn1_A 305 RSLKDFSSSKRMN-------TGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQG-TVDKLCRVEQDLAMGT 376 (594)
T ss_dssp HHHHHHHHHTTC--------------CCSSCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHSB
T ss_pred HHHHHHHHHhhhc-------ccccCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCC
Confidence 9999998765321 1235678899999999999999999999999999999999987 8999999999999986
Q ss_pred CC--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCC
Q 006048 412 AG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKK 483 (663)
Q Consensus 412 ~~--------~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~ 483 (663)
+. .+.+.++|. +++++.+|||||+|||+|++ +|+++++++++++++|++.+++.++.||+.+|+...+..
T Consensus 377 d~~~~~~k~~~~~i~~lL~-~~~~~~~dkLRL~~Ly~l~~-~g~~~~~~~~L~~~~~~~~~~~~~i~nl~~lG~~~~~~~ 454 (594)
T 1dn1_A 377 DAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTDS 454 (594)
T ss_dssp CSSCCBCCCTHHHHHHHHH-CTTSCHHHHHHHHHHHHHHT-TCBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCCC
T ss_pred CcccchhHHHHHHHHHHHh-CCCCChHhHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc
Confidence 42 234566776 46789999999999999997 589999999999999999999999999999997654221
Q ss_pred CCCCCCCcccccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCccc
Q 006048 484 SSTGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVA 563 (663)
Q Consensus 484 ~~~~~~~~~f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~ 563 (663)
. .. |.+.+.++++ +.++.|.+|||+|++++++|++++|+|++++|||+.++++...+
T Consensus 455 ~-------~~--k~~~~~~k~~-~~e~~Y~lsr~~P~l~~ile~~~~~~L~~~~fP~~~~~~~~~~~------------- 511 (594)
T 1dn1_A 455 T-------LR--RRSKPERKER-ISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS------------- 511 (594)
T ss_dssp G-------GG--CCCCCCCCCC-CCSCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC-------------------
T ss_pred c-------cc--cccccccccC-CCCccceeeccchHHHHHHHHHHhCCCCcccCCccCCCCCcccc-------------
Confidence 1 00 1222333333 67899999999999999999999999999999999765421100
Q ss_pred ccccCCCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhcC-CeEEEccCcccChh
Q 006048 564 HSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLN-REIILGSTSLDDPP 642 (663)
Q Consensus 564 ~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~-~~iiigsT~Ii~~~ 642 (663)
.+..+.|+++|++.++... .+.++++||||+||+||+|+|++|++++..+ ++|+||||+|+||+
T Consensus 512 ~~~~s~r~~~w~~~~~~~~---------------~~~~~riivFivGG~Ty~E~r~~~els~~~~~~~VilG~t~il~p~ 576 (594)
T 1dn1_A 512 TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTPQ 576 (594)
T ss_dssp -----------------------------------CCCCEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECHH
T ss_pred ccccccccccccccCCccc---------------cccCCcEEEEEeCCccHHHHHHHHHHHhhcCCceEEEeeCCcCCHH
Confidence 1122345578986543211 1357899999999999999999999999874 89999999999999
Q ss_pred HHHHHHhccCCCC
Q 006048 643 QFITKMKMLTVDE 655 (663)
Q Consensus 643 ~fl~~l~~l~~~~ 655 (663)
+||++|..|++++
T Consensus 577 ~Fl~~l~~l~~~~ 589 (594)
T 1dn1_A 577 KLLDTLKKLNKTD 589 (594)
T ss_dssp HHHHHHTTTTSCS
T ss_pred HHHHHHHHhCCCc
Confidence 9999999999875
No 2
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=100.00 E-value=6.7e-106 Score=909.50 Aligned_cols=569 Identities=28% Similarity=0.484 Sum_probs=468.1
Q ss_pred chhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecC
Q 006048 15 YKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQP 94 (663)
Q Consensus 15 ~~~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~P 94 (663)
+-+|++++|++|+++||++++. +++|||||+|+.+++|||+||++++|+++||++++.|+.+|+|+|+++|||||+|
T Consensus 7 ~~~lk~~~~~~l~~~~l~~v~~---~~~~KvLvlD~~t~~ils~~~~~sdLl~~gVtlve~i~~~R~~~~~~~aIYfv~P 83 (592)
T 3puk_A 7 ERGLKSVVWRKIKTAVFDDCRK---EGEWKIMLLDEFTTKLLSSCCKMTDLLEEGITVIENIYKNREPVRQMKALYFISP 83 (592)
T ss_dssp CCCHHHHHHHHHHHHTTGGGCC---TTCCEEEEECHHHHHHHHHSSCTTGGGGGTEEEEEESSSCCCCBTTSCEEEEECS
T ss_pred ChhHHHHHHHHHHHHHHHhhcc---cCCCEEEEECCccHHHHHHHhcHHHHHhCCcEEEeeccCccCCCCCCcEEEEEeC
Confidence 4579999999999889999963 4579999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcC
Q 006048 95 TKENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG 173 (663)
Q Consensus 95 t~~~i~~i~~d~~~~-~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~ 173 (663)
|.+||++|++||+.. .++|++|||||++.+|+.+++.| + .++.+.|+++.|+++||+|+|+++|||++|++|..+|.
T Consensus 84 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~lle~L-~-~~~~~~I~~v~e~~ldfiple~~lFsL~~p~~~~~l~~ 161 (592)
T 3puk_A 84 TPKSVDCFLRDFGSKSEKKYKAAYIYFTDFCPDSLFNKI-K-ASCSKSIRRCKEINISFIPQESQVYTLDVPDAFYYCYS 161 (592)
T ss_dssp CHHHHHHHHHHHTGGGCCCBSCEEEEESSCCCHHHHHHH-H-HSCCSSEEEEEECCCCEEEEETTEEEECCTTHHHHHSC
T ss_pred CHHHHHHHHHHHhccccccCCeEEEEECCCCCHHHHHHH-H-hhHHhhcCEEEEEeeeeEeccCCEEEecCCchHHHHcC
Confidence 999999999999742 35999999999999999999999 4 57899999999999999999999999999999999999
Q ss_pred CCCC-ccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHH-hhhhcCCCCC-C
Q 006048 174 DEEN-SRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMK-YKQSIENFPQ-T 250 (663)
Q Consensus 174 ~~~~-~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~-~~~~~~~~~~-~ 250 (663)
+..+ ..+....++++|++|+++|.++|.+|.|||+|+.. .-|+++|..+++.|.+ +....+.++. .
T Consensus 162 ~~~~~~~~~~~~l~~ia~~L~sl~~tlg~~P~IRy~~~~~-----------~~a~~lA~~l~~~l~~~~~~~~~~~~~~~ 230 (592)
T 3puk_A 162 PDPSNASRKEVVMEAMAEQIVTVCATLDENPGVRYKSKPL-----------DNASKLAQLVEKKLEDYYKIDEKGLIKGK 230 (592)
T ss_dssp CSSSTTHHHHHHHHHHHHHHHHHHHHHTCCCEEEECCSSS-----------SHHHHHHHHHHHHHHHSSSSCSSCSCCSC
T ss_pred CcccccccchHHHHHHHHHHHHHHHhcCCCCeEEECCCch-----------HHHHHHHHHHHHHHHHHHhccCCCcCCCC
Confidence 6542 13457899999999999999999999999998742 1256789888888877 4332333322 4
Q ss_pred CCeeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHH
Q 006048 251 ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERL 330 (663)
Q Consensus 251 ~~~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l 330 (663)
++++|||+||++|++|||+||||||||+||+|||++|.|+++. .| ++|++.|+++|+||.++||+||++|+..|
T Consensus 231 ~~~~LiIlDR~~D~vtPLlh~~TYqalv~dll~i~~~~v~~~~---~g---~~k~~~L~~~D~~~~~~r~~~f~~v~~~l 304 (592)
T 3puk_A 231 TQSQLLIIDRGFDPVSTVLHELTFQAMAYDLLPIENDTYKYKT---DG---KEKEAVLEEDDDLWVRVRHRHIAVVLEEI 304 (592)
T ss_dssp CSEEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCGGGEEECCS---SS---SCCEEECSTTSSSTTTTTTSBHHHHHTTS
T ss_pred CCceEEEecCCccccccccccccHHHHHHHHhcccCCEEEecC---CC---ceeEEecCCCCHHHHHHhccCHHHHHHHH
Confidence 5899999999999999999999999999999999999999874 12 46789999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 006048 331 HEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFG 410 (663)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g 410 (663)
.+++++|+++++. ..+..+++||++||++||+++++++.+++|++||++|++.+++ +|++++++||+|++|
T Consensus 305 ~~~~~~~~~~~~~--------~~~~~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~-~l~~~~e~EQ~l~~g 375 (592)
T 3puk_A 305 PKLMKEISSTKKA--------TEGKTSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKL-NIEKLCKTEQDLALG 375 (592)
T ss_dssp CSCSTTTTTCC---------------CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhhc--------ccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhC
Confidence 9999999876532 1235688999999999999999999999999999999999987 899999999999998
Q ss_pred CCCh--------HHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccC
Q 006048 411 DAGL--------KDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIK 482 (663)
Q Consensus 411 ~~~~--------~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~ 482 (663)
.+.. +.++++|. +.+++.+|||||+|||+|++ +|+++++++++++++|++. +..++.||..+|+...+.
T Consensus 376 ~d~~~~~~k~~~~~i~~~L~-~~~~~~~dkLRL~lLy~L~~-~g~~~~~~~~Ll~~~g~~~-~~~~i~nl~~lg~~~~~~ 452 (592)
T 3puk_A 376 TDAEGQRVKDSMLVLLPVLL-NKNHDNCDKIRAVLLYIFGI-NGTTEENLDRLIHNVKIED-DSDMIRNWSHLGVPIVPP 452 (592)
T ss_dssp SCTTCCSCSCCHHHHTTTTT-SCSCCHHHHHHHHHHHHHHS-CBCCHHHHHHHHHHTCCCT-TTHHHHGGGGGTCCSSSS
T ss_pred CCccchhhHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHcCCCh-HHHHHHHHHHhCCccccC
Confidence 6431 23455565 46789999999999999998 5999999999999999986 899999999999865422
Q ss_pred CCCCCCCCcccccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCcc
Q 006048 483 KSSTGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPV 562 (663)
Q Consensus 483 ~~~~~~~~~~f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~ 562 (663)
. +..++.++.+ ++++.|++|||+|++++++|++++|+|+++.|||+.+++....+ .
T Consensus 453 ~------------~~~~~~rk~~-~~e~~Y~~Sr~~P~l~~ile~~~~g~L~~~~fP~~~~~~~~~~~---------~-- 508 (592)
T 3puk_A 453 S------------QQAKPLRKDR-SAEETFQLSRWTPFIKDIMEDAIDNRLDSKEWPYCSRCPAVWNG---------S-- 508 (592)
T ss_dssp B------------SSCCCCCCCC-CCCCGGGSCCCCCTTHHHHHHHHTCCCCTTTSCC----------------------
T ss_pred c------------cccCcccccC-CCCcceeeeccchHHHHHHHHHHhCCCCcccCCccCCCCCCccC---------C--
Confidence 1 1112223333 67899999999999999999999999999999999765421000 0
Q ss_pred cccccCCCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhcC-CeEEEccCcccCh
Q 006048 563 AHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLN-REIILGSTSLDDP 641 (663)
Q Consensus 563 ~~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~-~~iiigsT~Ii~~ 641 (663)
+..+.|+++| +.+... ....+++|||||+||+||+|+|++|++++..+ ++|+||||+|+||
T Consensus 509 --~~~s~r~~~w-~~~~~~---------------~~~~~~riiVFivGGvTysE~r~~~els~~~~~~~vilG~T~i~np 570 (592)
T 3puk_A 509 --GAVSARQKPR-TNYLEL---------------DRKNGSRLIIFVIGGITYSEMRCAYEVSQAHKSCEVIIGSTHILTP 570 (592)
T ss_dssp -----------C-CCCCCC---------------CCSCCSEEEEEEETCEEHHHHHHHHHHHHHCCSSEEEEEESSEECH
T ss_pred --cccccccccc-ccCccc---------------cccCCCeEEEEEeCCcCHHHHHHHHHHHhhcCCceEEEeeCCcCCH
Confidence 0113455688 333211 01357899999999999999999999999875 8999999999999
Q ss_pred hHHHHHHhccCCC--CCCcc
Q 006048 642 PQFITKMKMLTVD--ELSLD 659 (663)
Q Consensus 642 ~~fl~~l~~l~~~--~~~~~ 659 (663)
++||++|..|+++ .|+|.
T Consensus 571 ~~fl~~l~~l~~~~~~~~~~ 590 (592)
T 3puk_A 571 RKLLDDIKMLNKSKDKVSFK 590 (592)
T ss_dssp HHHHHHHSSTTSCCC-----
T ss_pred HHHHHHHHHhCCcccccCCC
Confidence 9999999999966 44444
No 3
>2xhe_A UNC18; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=100.00 E-value=6.6e-104 Score=906.72 Aligned_cols=600 Identities=25% Similarity=0.473 Sum_probs=472.0
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecCCH
Q 006048 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK 96 (663)
Q Consensus 17 ~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~ 96 (663)
+|++++|++|++++| +++. ..+|||||+|+.+.++||++|++++|+++||++++.|+..|+|+|+++|||||+|+.
T Consensus 3 ~l~~~~r~~ll~~~l-~v~~---~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIyfv~Pt~ 78 (650)
T 2xhe_A 3 SLKSAVKTVLTNSLR-SVAD---GGDWKVLVVDKPALRMISECARMSEILDLGVTVVEDVSKQRKVLPQFHGVYFIEPTE 78 (650)
T ss_dssp CHHHHHHHHHHHHHT-TCCC---CSSCEEEEECHHHHHHHHTTCCHHHHHTTTEEEEEETTTCCSCBTTSEEEEEECSCH
T ss_pred cHHHHHHHHHHHHHh-cccc---CCCCEEEEEccccHHHHHhhcCHHHHHhCCCEEEEeccCCCCCCCCCCEEEEEcCCH
Confidence 589999999998899 8853 247999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcCCCC
Q 006048 97 ENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDEE 176 (663)
Q Consensus 97 ~~i~~i~~d~~~~~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~~ 176 (663)
+||++|++||+...|+|+.|||||++.+|+.+++.+|+. ++.+.|+++.|+++||+|+|+|+|||++|++|..+|.+..
T Consensus 79 ~ni~~i~~d~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldfiple~dlfsL~~~~~~~~l~~~~~ 157 (650)
T 2xhe_A 79 ENLDYVIRDFADRTPTYEAAHLFFLSPVPDALMAKLASA-KAVKYVKTLKEINTLFIPKEHRVFTLNEPHGLVQYYGSRS 157 (650)
T ss_dssp HHHHHHHHHHHSSSCSBSCEEEEESSCCCHHHHHHHHHS-GGGGGEEEEEECCCCSEEEETTEEECSCTTHHHHHHSTTG
T ss_pred HHHHHHHHHHhhcCCCcceEEEEeCCCCCHHHHHHHHhc-chhhhcCEEEEEccceEeccCCEEEeCCchHHHHhcCCcc
Confidence 999999999975448999999999999999999999974 5888998999999999999999999999999999996422
Q ss_pred CccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCC---CCCCCe
Q 006048 177 NSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENF---PQTETC 253 (663)
Q Consensus 177 ~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~---~~~~~~ 253 (663)
....++++|++|+++|.++|.+|.|||+|+.+ ..|+++|..+++.|.+ ......+ +..+++
T Consensus 158 ----~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~~-----------~~a~~la~~l~~~l~~-~~~~~~~~~~~~~~~~ 221 (650)
T 2xhe_A 158 ----SSYNIDHLVRRLSTLCTTMNVAPIVRYSSTST-----------PGTERMAMQLQKEIDM-SVSQGLINAREGKLKS 221 (650)
T ss_dssp ----GGCCHHHHHHHHHHHHHHHTCCCEEEECTTCC-----------HHHHHHHHHHHHHHHH-HHTTTSCCCCCCSSCC
T ss_pred ----chHHHHHHHHHHHHHHHHcCCCCEEEecCCCc-----------hHHHHHHHHHHHHHHh-hccCCcccCCCCCCCC
Confidence 25679999999999999999999999998741 3577888888877765 2222211 334589
Q ss_pred eEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHHHHH
Q 006048 254 DLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHEK 333 (663)
Q Consensus 254 ~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~~~ 333 (663)
+|||+||++|++|||+||||||||+||+|||++|+|+++.+.. ++..++|++.|+++|+||+++||+||++|+..|.++
T Consensus 222 ~LiIlDR~~D~vTPLlhq~TYqaLi~dll~I~~n~v~~~~~~~-~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~~ 300 (650)
T 2xhe_A 222 QFLILDRAVDLKSPLVHELTYQAAAYDLLNIENDIYSYSTVDA-GGREQQRQVVLGEDDDIWLQMRHLHISEVFRKVKSS 300 (650)
T ss_dssp EEEEECGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEECCS-SCCSEEEEEECCTTCTTHHHHTTSBHHHHHHHHHHH
T ss_pred EEEEEcCCcchhhhccccchHHHHHHHHhcCcCCEEEEEecCC-CCCccceEEeCCCCCHHHHHHhccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999986422 234567889999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhh-cccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCC
Q 006048 334 MTSFISKNKAAQIQH-SARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA 412 (663)
Q Consensus 334 ~~~~~~~~~~~~~~~-~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~ 412 (663)
+++|+++++. .+. +...++..+++||++||++||+++++++++++|++||++|++.+++ +|++++++||+|++|.+
T Consensus 301 ~~~~~~~~~~--~~~~~~~~~~~~s~~~lk~~V~~LP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d 377 (650)
T 2xhe_A 301 FDEFCVSARR--LQGLRDSQQGEGGAGALKQMLKDLPQHREQMQKYSLHLDMSNAINMAFSS-TIDSCTKAEQNIVTEEE 377 (650)
T ss_dssp HHHHHHHHHH--TTTCCCCCCSTTTHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHhhh--hccccccccccccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCc
Confidence 9999987653 221 0011245689999999999999999999999999999999999999 99999999999999875
Q ss_pred C--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCC
Q 006048 413 G--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS 484 (663)
Q Consensus 413 ~--------~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~ 484 (663)
. .+.+.++|. +...+..|||||+|||+++++ |+++++++++++.||++.+++.+|.||+++|+...+..
T Consensus 378 ~~g~~~~~~~~~i~~ll~-~~~~~~~dkLRLl~Ly~l~~~-g~~~~~l~~ll~~~G~~~~~~~~i~nL~~lgl~~~~~~- 454 (650)
T 2xhe_A 378 QDGNKVRDFIGEVASVVV-DRRVSTEDKLRCLMLCVLAKN-GTSSHELNNLLDNANIATPSRSAIYNLEMLGATVVADR- 454 (650)
T ss_dssp SSCCBCCCHHHHHHHHHH-CTTSCHHHHHHHHHHHHHHHT-CBCHHHHHHHHHHTTCCGGGGHHHHGGGGGTCCCBGGG-
T ss_pred ccccchhHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccccc-
Confidence 3 245667776 467899999999999999994 89999999999999999899999999999999765321
Q ss_pred CCCCCCcccccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCcccc
Q 006048 485 STGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAH 564 (663)
Q Consensus 485 ~~~~~~~~f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~ 564 (663)
+.. ..|. ..++++ ..+|+||||+|+++||||++++++|+++.||++.++.....+.+...+....++..
T Consensus 455 --~~~-~~~~-----~~rk~~---~~~yv~s~y~Pl~~rlve~l~~~~l~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 523 (650)
T 2xhe_A 455 --RGR-KPKT-----MKRIER---DMPYVLSRWTPIVKDLMEYIATGQLDLESYPAVRDGPSVVQPKRASKSVEEDDDGP 523 (650)
T ss_dssp --CCC-CCCC-----CCCCCC---CCCSTTCCCCCHHHHHHHHHTTTCSCTTTSCBSSCGGGSCCCC-------------
T ss_pred --ccc-cccc-----cccccc---CCcceeccchHHHHHHHHHHhcCCCCcccCceeCCCCccccccccccccccccccc
Confidence 110 0111 111222 23899999999999999999999999999999975432111100000000000001
Q ss_pred cccCCCCCCccCCCCCCCC----CCccchhcccc-cccccCCceEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCccc
Q 006048 565 SMRSRRTPTWARPRNSDDG----YSSDSVLRHAS-SDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLD 639 (663)
Q Consensus 565 s~~~~r~~~~~~~~~~~~~----~~~~s~~~~~~-~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii 639 (663)
..++.|.++|+++...... .++++..+... +.+..+++++||||||||||+|+|++|+|+++.|++||||||+|+
T Consensus 524 ~~~s~~~~~w~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~viVF~iGGvTysEi~al~~ls~~~~~~viigsT~Il 603 (650)
T 2xhe_A 524 ATSARKRGNWAKNKGNNRSLPSTPSGVAVSGNGAAGAAESAKPKLFVFINGTVSYNEIRCAYEVSQSSGYEVYIGAHNIA 603 (650)
T ss_dssp --------------------------------------CCCSCEEEEEEEEEECHHHHHHHHHHHTTSSSEEEEEEEEEC
T ss_pred cccccccccccccccccccccccccccccccccccccccCCCCEEEEEEECCCCHHHHHHHHHHHhcCCCEEEEeeCCcC
Confidence 1223345688865432211 01111111100 011235688999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhccCCCC
Q 006048 640 DPPQFITKMKMLTVDE 655 (663)
Q Consensus 640 ~~~~fl~~l~~l~~~~ 655 (663)
||++||+++..|++++
T Consensus 604 n~~~fl~~l~~l~~~~ 619 (650)
T 2xhe_A 604 TPAEFVELVSLLDKAD 619 (650)
T ss_dssp CHHHHHHHHHTTTC--
T ss_pred CHHHHHHHHHHcCCCc
Confidence 9999999999999764
No 4
>3c98_A Syntaxin-binding protein 1; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus} PDB: 3puj_A
Probab=100.00 E-value=2.3e-104 Score=906.44 Aligned_cols=574 Identities=30% Similarity=0.562 Sum_probs=473.4
Q ss_pred chhHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecC
Q 006048 15 YKNFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQP 94 (663)
Q Consensus 15 ~~~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~P 94 (663)
|.+||+++|++++++|++++++ +.+|||||+|+.+++|||+||+++||+++||++++.|+..|+|+|+++|||||+|
T Consensus 15 p~~l~~~~~~~~l~~~i~~v~~---~~~wKvLi~D~~t~~iis~~~~~~~L~~~gVtl~~~i~~~R~~~~~~~aIyfv~P 91 (606)
T 3c98_A 15 PIGLKAVVGEKIMHDVIKKVKK---KGEWKVLVVDQLSMRMLSSCCKMTDIMTEGITIVEDINKRREPLPSLEAVYLITP 91 (606)
T ss_dssp -CCHHHHHHHHHHHHTHHHHCB---TTBCEEEEECHHHHHHHHTTCCHHHHTTTTEEEEEETTSCCCCBTTSCEEEEECC
T ss_pred cHHHHHHHHHHHHHHHHhccCC---CCceEEEEEcCCChHHHHhhCCHHHHHHCCCeEEEeccCCCCCCCCCCEEEEEcC
Confidence 5679999999999999999974 3469999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcC
Q 006048 95 TKENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFG 173 (663)
Q Consensus 95 t~~~i~~i~~d~~~~-~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~ 173 (663)
|.+||++|++||++. .++|++|||||++.+|+.+++.||+ .+..+.|+++.|+++||+|+|+|+|||++|++|..+|.
T Consensus 92 t~eni~~i~~dl~~~~~~~Y~~~~i~F~~~~~~~~le~la~-~~~~~~i~~v~e~~ldf~~le~~lfsL~~~~~~~~l~~ 170 (606)
T 3c98_A 92 SEKSVHSLISDFKDPPTAKYRAAHVFFTDSCPDALFNELVK-SRAAKVIKTLTEINIAFLPYESQVYSLDSADSFQSFYS 170 (606)
T ss_dssp CHHHHHHHHHTTTSGGGCCBSCEEEEESSCCCHHHHHHHHT-SGGGGTEEEEEECCCCSEECSSSEEECCCTTHHHHHHC
T ss_pred CHHHHHHHHHHhcchhhcccCeEEEEECCCCCHHHHHHHHh-cCcccccCeEEEEecchhhcCCcEEEecCCchHHHhcC
Confidence 999999999999742 3589999999999999999999997 46788999999999999999999999999999999998
Q ss_pred CCCCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCC---CCC
Q 006048 174 DEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENF---PQT 250 (663)
Q Consensus 174 ~~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~---~~~ 250 (663)
+... .+....++++|++|+++|.++|.+|.|||+|+. ..|+.+|+.+++.+..+.++++.+ +..
T Consensus 171 ~~~~-~~~~~~l~~ia~~L~sv~~~lg~~P~Ir~~~~~------------~~~~~la~~~~~~l~~~~~~~~~~~~~~~~ 237 (606)
T 3c98_A 171 PHKA-QMKNPILERLAEQIATLCATLKEYPAVRYRGEY------------KDNALLAQLIQDKLDAYKADDPTMGEGPDK 237 (606)
T ss_dssp GGGT-TSCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------HHHHHHHHHHHHHHHHHHHHCTTTTCSTTT
T ss_pred Cccc-ccchHHHHHHHHHHHHHHHHcCCCCeEEEecCc------------hHHHHHHHHHHHHHHHHHhcCCcccCCCCC
Confidence 5432 233678999999999999999999999999874 246778899999888887665443 234
Q ss_pred CCeeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHH
Q 006048 251 ETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERL 330 (663)
Q Consensus 251 ~~~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l 330 (663)
++++|||+||++|++|||+||||||||+||+|||++|.|+++.+. .+..+.|++.|+++|+||.++||+||++|+..|
T Consensus 238 ~~~~LlIlDR~~D~vTPLlhq~TYqalv~dll~I~~n~v~~~~~~--~~~~~~k~~~l~~~D~~~~~~r~~~f~~v~~~l 315 (606)
T 3c98_A 238 ARSQLLILDRGFDPSSPVLHELTFQAMSYDLLPIENDVYKYETSG--IGEARVKEVLLDEDDDLWIALRHKHIAEVSQEV 315 (606)
T ss_dssp TSCEEEEEEGGGCSSTTTSCCCBHHHHHHHHSCCBTTEEEEEEES--SSSEEEEEEECSTTCHHHHHHTTSBHHHHHHHH
T ss_pred CCceEEEeeccccccchhcccccHHHHHHHHhCccCCeEEEecCC--CCCccceEeecCCCchhHHHHhccCHHHHHHHH
Confidence 579999999999999999999999999999999999999998632 223456889999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcC
Q 006048 331 HEKMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFG 410 (663)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g 410 (663)
.+++++|+++++. ..++..+++||++||++||+++++++.+++|++|+++|++.++ ++|++++++||+|++|
T Consensus 316 ~~~~~~~~~~~~~-------~~~~~~s~~dlk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~~~-~~l~~~~e~EQ~l~~~ 387 (606)
T 3c98_A 316 TRSLKDFSSSKRM-------NTGEKTTMRDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKHYQ-GTVDKLCRVEQDLAMG 387 (606)
T ss_dssp HHHHHHHHHHTTC--------------CCSCCCTTTTCGGGHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhh-------hcccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 9999999876532 1223457889999999999999999999999999999999995 6899999999999988
Q ss_pred CCC--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccC
Q 006048 411 DAG--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIK 482 (663)
Q Consensus 411 ~~~--------~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~ 482 (663)
.+. .+.++++|. +..++..|||||+|||++++ +|++++++.++++..|++..+..++.+|..+|+...+.
T Consensus 388 ~d~~~~~~~~~~~~i~~ll~-~~~~~~~dkLRL~lLy~l~~-~g~~~~~l~~~~~~~~~~~~~~~~i~~l~~lg~~~~~~ 465 (606)
T 3c98_A 388 TDAEGEKIKDPMRAIVPILL-DANVSTYDKIRIILLYIFLK-NGITEENLNKLIQHAQIPPEDSEIITNMAHLGVPIVTD 465 (606)
T ss_dssp BCTTSCBCSCTHHHHHHHHT-CTTSCHHHHHHHHHHHHHHT-TSBCHHHHHHHHHHHTCCHHHHHHHHHGGGGTCCCBCC
T ss_pred CCcchhhHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhCCccccc
Confidence 543 246777776 46789999999999999998 58999999999999999999999999999999865422
Q ss_pred CCCCCCCCcccccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCcc
Q 006048 483 KSSTGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPV 562 (663)
Q Consensus 483 ~~~~~~~~~~f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~ 562 (663)
.. . + +......+. .+.+.+|+||||+|++++++|.+++++|+++.||++..+.....+
T Consensus 466 ~~----~---~--~~~~~~~~~-~~~~~~~~~s~~~Pll~~lle~l~k~~L~~~~~p~~~~~~~~~~~------------ 523 (606)
T 3c98_A 466 ST----L---R--RRSKPERKE-RISEQTYQLSRWTPIIKDIMEDTIEDKLDTKHYPYISTRSSASFS------------ 523 (606)
T ss_dssp CT----T---T--CCCCCCCCC-CCCCCCCTTCCCCCHHHHHHHHHHTTCSCTTTSCCSSCC------------------
T ss_pred cc----c---c--cccchhhcc-CCcccccceecchHHHHHHHHHHHhCCCCcccCcccCCCCccccc------------
Confidence 11 0 0 001111111 256788999999999999999999999999999999755432110
Q ss_pred cccccCCCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhcC-CeEEEccCcccCh
Q 006048 563 AHSMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKLN-REIILGSTSLDDP 641 (663)
Q Consensus 563 ~~s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~~-~~iiigsT~Ii~~ 641 (663)
....+.++++|.++..... ...++++|||||||+||+|+|++|+++++.+ ++|+||||+|+||
T Consensus 524 -~~~~~~~~~~~~~~~~~~~---------------~~~~~~iIVFvvGGvTy~E~~~l~~ls~~~~~~~viiGsT~Iln~ 587 (606)
T 3c98_A 524 -TTAVSARYGHWHKNKAPGE---------------YRSGPRLIIFILGGVSLNEMRCAYEVTQANGKWEVLIGSTHILTP 587 (606)
T ss_dssp ------------------------------------CCCSEEEEEEETCEEHHHHHHHHHHHHHHSSCEEEEEESSEECH
T ss_pred -ccccccccCCccccCCCCC---------------CCCCCEEEEEEECCcCHHHHHHHHHHHHHcCCcEEEEEeCCeeCH
Confidence 0111223356665433211 1356789999999999999999999998764 7999999999999
Q ss_pred hHHHHHHhccCCCC
Q 006048 642 PQFITKMKMLTVDE 655 (663)
Q Consensus 642 ~~fl~~l~~l~~~~ 655 (663)
++||++|..|++++
T Consensus 588 ~~fl~~L~~L~k~~ 601 (606)
T 3c98_A 588 QKLLDTLKKLNKTD 601 (606)
T ss_dssp HHHHHHHTTTTSCC
T ss_pred HHHHHHHHHhCCCc
Confidence 99999999999864
No 5
>1epu_A S-SEC1; parallel beta-sheets, LEFT-hand turn connection, helical BUN endocytosis-exocytosis complex; 2.40A {Loligo pealei} SCOP: e.25.1.1 PDB: 1fvf_A 1fvh_A
Probab=100.00 E-value=7.4e-104 Score=900.32 Aligned_cols=575 Identities=30% Similarity=0.531 Sum_probs=468.4
Q ss_pred hHHHHHHHHHHHHHHHhccCCCCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEEecCCH
Q 006048 17 NFKQISRERLLYEMLRSAKTGTSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYFIQPTK 96 (663)
Q Consensus 17 ~l~~~~r~~l~~~~l~~v~~~~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~i~Pt~ 96 (663)
+|++++|++++++|++.++. .++|||||+|+.++++||++|++++|+++||++++.|+..|+|+|+++|||||+|+.
T Consensus 2 ~l~~~~~~~~~~~i~~~~~~---~~~~KvLvlD~~~~~ils~~~~~s~L~~~gV~lv~~l~~~r~~~~~~~aIy~v~Pt~ 78 (591)
T 1epu_A 2 ALKTAVHEKIMNDVVLAVKK---NAEWKVLIVDQLSMRMVSACCKMHEIMSEGITLVEDINRRREPLPLLEAVYLITPTE 78 (591)
T ss_dssp CHHHHHHHHHHHHTHHHHCS---SSCCEEEEECHHHHHHHHHHCCHHHHHTTTEEEEEESSSCCCCEEEEEEEEEECCCH
T ss_pred ChHHHHHHHHHHHHHHhhcc---CCCcEEEEEccccHHHHHHhcCHHHHHHCCCEEEeecccCCCCCCCCCeEEEecCCH
Confidence 58999999999999998863 247999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccC-CCCcceEEEEecCCCCHHHHHHHHhcCCcccccceeEEEecceeecCCCceeeCCcchhhhhcCCC
Q 006048 97 ENVIMFLSDMSGR-SPLYKKAFVFFSSPISRELVTHIKKDSTVLPRIGALREMNLEYFAIDSQGFVTDDERALEELFGDE 175 (663)
Q Consensus 97 ~~i~~i~~d~~~~-~~~y~~~~i~Ft~~vp~~~le~la~~~~~~~~i~~i~e~~ldfipld~dlfsl~~~~~~~~l~~~~ 175 (663)
+||++|++||+.. .|.|++|||+|++.+|+.+++.||+. ++.+.|+++.|+++||+|+|+|+|||++|++|..+|.+.
T Consensus 79 ~ni~~i~~d~~~~~~~~y~~~~i~F~~~~~~~~le~la~~-~~~~~i~~v~e~~ldf~ple~dlfsl~~~~~~~~~~~~~ 157 (591)
T 1epu_A 79 ESVKCLMADFQNPDNPQYRGAHIFFTEACPEELFKELCKS-TTARFIKTLKEINIAFLPYESQIFSLDSPDTFQVYYNPS 157 (591)
T ss_dssp HHHHHHHHHTSSTTSCSEEEEEEEESSCCCHHHHHHHHHS-TTGGGEEEEEECCCCSEEEETTEEECCCTHHHHHHHCGG
T ss_pred HHHHHHHHHHhhcccccCCeEEEEECCCCCHHHHHHHHhC-chHhhhceeeEeccceEecCCCEEEeCCccHHHHhcCCc
Confidence 9999999999752 48999999999999999999999975 588889899999999999999999999999999999863
Q ss_pred CCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHHHHHHhhhhcCCCCC---CCC
Q 006048 176 ENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWNCLMKYKQSIENFPQ---TET 252 (663)
Q Consensus 176 ~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~~l~~~~~~~~~~~~---~~~ 252 (663)
+ ..+....++++|++|+++|.++|.+|.|||+|+. ..|+++|..++++|.++..+.+.|+. .++
T Consensus 158 ~-~~~~~~~l~~ia~~L~sl~~~lg~~P~Ir~~~~~------------~~a~~lA~~l~~~l~~~~~~~~~~~~~~~~~~ 224 (591)
T 1epu_A 158 R-AQGGIPNKERCAEQIATLCATLGEYPSVRYRSDF------------DENASFAQLVQQKLDAYRADDPTMGEGPQKDR 224 (591)
T ss_dssp G-STTCHHHHHHHHHHHHHHHHHHTCCCEEEECTTS------------THHHHHHHHHHHHHHHHHHTCTTTTCHHHHTS
T ss_pred c-hhhhhHHHHHHHHHHHHHHHHcCCCCeEEecCCC------------cHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 2 1233688999999999999999999999999884 24788999999988887665555532 357
Q ss_pred eeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCCCCCcceeEecCCCChHHHHhhhCcHHHHHHHHHH
Q 006048 253 CDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTGGPPEKKEVLLEEHDPLWLELRHAHIADASERLHE 332 (663)
Q Consensus 253 ~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g~~~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~~ 332 (663)
++|||+||++|++|||+||||||||+||+|||++|+|+++.+ .++..++|++.|+++|+||+++||+||++|++.|.+
T Consensus 225 ~~LiIlDR~~D~vTPLlhq~TYqali~dll~I~~n~v~~~~~--~~~~~~~k~~~L~~~D~~~~~~r~~~f~~v~~~l~~ 302 (591)
T 1epu_A 225 SQLLILDRGFDPISPLLHELTFQAMAYDLLPIENDVYKYVNT--GGNEVPEKEVLLDEKDDLWVEMRHQHIAVVSQNVTK 302 (591)
T ss_dssp CEEEEEEGGGCSSGGGSCCCBHHHHHHHHSCCBTTEECC-------------CEECCGGGSSHHHHTTSBHHHHHHHHHH
T ss_pred ceEEEECCCccchhhhhhhhhHHHHHHHHhCcCCCEEEEEec--CCCCccceEEeCCCCChHHHHHhccCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999753 222345688999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhhcccCCCCCCHHHHHHHHHhcccchHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCC
Q 006048 333 KMTSFISKNKAAQIQHSARDGGELSTKDLQKMVQALPQYSDQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDA 412 (663)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~ 412 (663)
++++|+++++..+ .++..+++||++||++||+++++++++++|++||++|++.+++ +|++++++||+|++|.+
T Consensus 303 ~~~~~~~~~~~~~------~~~~~s~~~lk~~v~~lP~~~~~~~~l~~H~~ia~~l~~~i~~-~l~~~~~~EQ~l~~g~d 375 (591)
T 1epu_A 303 KLKQFADEKRMGT------AADKAGIKDLSQMLKKMPQYQKELSKYSTHLHLAEDCMKQYQQ-HVDKLCKVEQDLAMGTD 375 (591)
T ss_dssp HHHHHHHHTC--------------CCCCCHHHHHTHHHHHHHHTTSHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHSBC
T ss_pred HHHHHHHhccccc------cccccCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCC
Confidence 9999988654211 0134678999999999999999999999999999999999999 99999999999999875
Q ss_pred C--------hHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHHHHHHHHcCCChhHHHHHHHHHHhcCccccCCC
Q 006048 413 G--------LKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKGQNIMKLARLQSDDITAVNNMRLLGGASDIKKS 484 (663)
Q Consensus 413 ~--------~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~~~llq~~g~~~~~~~~l~~L~~lg~~~~~~~~ 484 (663)
. .+.+.++|. +.+.+..|||||+|||+++++ |+++++++++++.||++.+++.++.||+++|+...+...
T Consensus 376 ~~g~~~k~~~~~i~~~l~-~~~~~~~dkLRLl~Ly~l~~~-g~~~~~l~~ll~~~g~~~~~~~~i~~l~~~g~~~~~~~~ 453 (591)
T 1epu_A 376 ADGEKIRDHMRNIVPILL-DQKISAYDKIRIILLYIIHKG-GISEENLAKLVQHAHIPAEEKWIINDMQNLGVPIIQDGG 453 (591)
T ss_dssp TTSCBCCCCHHHHHHHHT-CTTSCHHHHHHHHHHHHHHHT-CBCHHHHHHHHHHTTCCHHHHHHHHHGGGGTCCCBSCTT
T ss_pred ccccccchHHHHHHHHHh-CCCCCHHHHHHHHHHHHHHcC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHcCCccccCCc
Confidence 3 135677775 467899999999999999994 899999999999999998899999999999987653321
Q ss_pred CCCCCCcccccccccccccccCCCCcccccccccHHHHHHHHHHhcCCCCCCCCCcccCCCCCccccccccccCCCcccc
Q 006048 485 STGAFSLKFDINKKRAVRKDRTGEEQTWQLSRFYPMIEELIEKLGKRELPKDDYPCMNEPSPTVHAKNQSAAISQPPVAH 564 (663)
Q Consensus 485 ~~~~~~~~f~~k~~~~~~~~~~~~d~~y~~s~y~Pl~~~lve~~~~~~l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~ 564 (663)
+...+...+. + .++. .+.+..|+||||+|++++|||.+++++++++.||+++++.+... . .
T Consensus 454 ~~~~~~~~~~-~----~~~~-~~~~~~y~~s~~~Pl~~~ive~l~~~~l~~~~~~~~~~~~~~~~----------~---~ 514 (591)
T 1epu_A 454 RRKIPQPYHT-H----NRKE-RQADHTYQMSRWTPYMKDIMEAAVEDKLDTRHYPFLNGGGPRPS----------C---Q 514 (591)
T ss_dssp SCCCCCTTSG-G----GSCC-CCSCCSCGGGCCCCHHHHHHHHHHTTCSCTTTSCBTTSCC-------------------
T ss_pred cccccccccc-c----cccc-CCCCccccccccchhHHHHHHHHhcCCCCcccCcccCCCCCccc----------c---C
Confidence 1011111000 1 1112 36778999999999999999999999999999999976432100 0 0
Q ss_pred cccCCCCCCccCCCCCCCCCCccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHh--hcCCeEEEccCcccChh
Q 006048 565 SMRSRRTPTWARPRNSDDGYSSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTR--KLNREIILGSTSLDDPP 642 (663)
Q Consensus 565 s~~~~r~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~--~~~~~iiigsT~Ii~~~ 642 (663)
..++.++++|+++.+... ...++++|||||||+||+|++++|+|++ ..|++|+||||+|+||+
T Consensus 515 ~~~s~~~~~~~~~~~~~~---------------~~~~~~viVF~vGG~Ty~E~~~l~~l~~~~~~~~~viigsT~i~n~~ 579 (591)
T 1epu_A 515 QPVSVRYGHWHKDKGQAS---------------YKSGPRLIIFVVGGISYSEMRSAYEVTQTAKNNWEVILGSTHILTPE 579 (591)
T ss_dssp ----------------------------------CCCCEEEEEEETCBCHHHHHHHHHHHTSSCSSCEEEEEESSBCCHH
T ss_pred CccccccCcccCCCCccc---------------cCCCCeEEEEEECCCCHHHHHHHHHHHhhccCCCeEEEecCCcCCHH
Confidence 112233457875432110 0235679999999999999999999998 56899999999999999
Q ss_pred HHHHHHhccCC
Q 006048 643 QFITKMKMLTV 653 (663)
Q Consensus 643 ~fl~~l~~l~~ 653 (663)
+||++|..|++
T Consensus 580 ~fl~~l~~l~~ 590 (591)
T 1epu_A 580 GLLRDLRKISN 590 (591)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHHHhcC
Confidence 99999999885
No 6
>1mqs_A SLY1 protein, SLY1P; SM-protein, snare, syntaxin, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: e.25.1.1
Probab=100.00 E-value=1.4e-92 Score=814.92 Aligned_cols=579 Identities=18% Similarity=0.312 Sum_probs=436.5
Q ss_pred CchhHHHHHHHHHHHHHHHhccCC-----C----------CCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccC
Q 006048 14 DYKNFKQISRERLLYEMLRSAKTG-----T----------SKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHR 78 (663)
Q Consensus 14 ~~~~l~~~~r~~l~~~~l~~v~~~-----~----------~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~ 78 (663)
...+||+.+|+.|+ .||...+.+ . ..++|||||+|+.+.+|||+||++++|+++||++++.|+.
T Consensus 15 ~~~~lr~~q~~~l~-~ml~~~~~~~~~~~~~~~~~~~~~~~~~~~KvLVlD~~~~~ils~~~~~s~L~~~gVtlv~~l~~ 93 (671)
T 1mqs_A 15 KDISLRDMQISAIL-KMLFLNKDLNNNDNITTITDDIFNQQEIIWKVLILDIKSTATISSVLRVNDLLKAGITVHSLIKQ 93 (671)
T ss_dssp CCCCHHHHHHHHHH-HHHTTTTTTTSCCCCSSCCHHHHHHHCCCCEEEEECHHHHHHHTTTCCHHHHHHTTEEEEEETTS
T ss_pred CcccHHHHHHHHHH-HHHccCCCCcccccccccccccccccCCCCEEEEEccccHHHHHHhcCHHHHHhCCCeEEeeccC
Confidence 34679999999999 799776420 1 2468999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEEEecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHhc---CCcccccceeEEEecceeec
Q 006048 79 RRQPLPSMEAIYFIQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKKD---STVLPRIGALREMNLEYFAI 155 (663)
Q Consensus 79 ~r~~~~~~~aIy~i~Pt~~~i~~i~~d~~~~~~~y~~~~i~Ft~~vp~~~le~la~~---~~~~~~i~~i~e~~ldfipl 155 (663)
.|+|+|+++|||||+|+.+||++|++||+. |.|++|||||++.+|+.+++.||+. .++.+.|++|.|+++||+|+
T Consensus 94 ~r~~~~~~~aIYfv~Pt~~ni~~i~~d~~~--~~Y~~~~i~F~~~~~~~lle~la~~~~~~~~~~~i~~v~e~~ldfipl 171 (671)
T 1mqs_A 94 DRSPLPDVPAIYFVSPTKENIDIIVNDLKS--DKYSEFYINFTSSLPRNLLEDLAQQVSITGKSDKIKQVYDQYLDFIVT 171 (671)
T ss_dssp CCCCEEEEEEEEEECSCHHHHHHHHHHHHH--TCEEEEEEEESSCCCHHHHHHHHHHHHTSTTGGGEEEEEECCCCSEEC
T ss_pred CCCCCCCceEEEEeCCCHHHHHHHHHHhhh--cccceEEEEecCCCCHHHHHHHHhhhhhcchhhhcCEEEEEccceeec
Confidence 999999999999999999999999999974 7999999999999999999999863 57899999999999999999
Q ss_pred CCCceeeCCcchhhhhcCCCCCccchhHHHHHHHHHHHHHHHHhCCccEEEEccCCCccccccccccchHHHHHHHHHHH
Q 006048 156 DSQGFVTDDERALEELFGDEENSRRGDACLNVMASRIATVFASLREFPLVRYRAAKSLDTMTMTTFSDLIPTKLAAGVWN 235 (663)
Q Consensus 156 d~dlfsl~~~~~~~~l~~~~~~~~~~~~~l~~ia~~L~~l~~~lg~~P~Ir~~g~~~~~~~~~~~~~~~i~~~la~~l~~ 235 (663)
|+|+|||++|++|..+|.+..|.......++++|++|+++|.++|.+|.|||..+. .|+++|..+..
T Consensus 172 e~dlfsL~~p~s~~~l~~~~~~d~~~~~~l~~ia~~L~sl~~~lg~~P~IRy~~g~-------------~a~~va~~L~~ 238 (671)
T 1mqs_A 172 EPELFSLEISNAYLTLNDPKTTEEEITGLCANIADGLFNTVLTINSIPIIRAAKGG-------------PAEIIAEKLGT 238 (671)
T ss_dssp STTEEECCCCSHHHHHHCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCCEEEECSSS-------------HHHHHHHHHHH
T ss_pred cCCEEEecCchHHHHhcCCCccchhHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCC-------------hHHHHHHHHHH
Confidence 99999999999999999976554444578999999999999999999999985432 25556666655
Q ss_pred HHHHhhhhc--CCC------CCCCCeeEEEEcCCCCchhhhhhhhhhHHHHhhhcccCCCeEEEeccCCCC-------CC
Q 006048 236 CLMKYKQSI--ENF------PQTETCDLLILDRSVDQVAPIIHEWTYDAICRDLLNMEGNKYVHEVPSKTG-------GP 300 (663)
Q Consensus 236 ~l~~~~~~~--~~~------~~~~~~~LiIlDR~~DliTPLlh~~TYqaLl~el~gI~~~~v~~~~~~~~g-------~~ 300 (663)
++..+.... ..| +...+++|||+||++|++|||+||||||||+||+|||++|.|+++.....+ ..
T Consensus 239 ~l~~~~~~~~~~lf~~~~~~~~~~~~~LiIlDR~~DlvTPLlhq~TYqaLi~Dll~I~~n~v~~~~~~~~~~~~~~~~~~ 318 (671)
T 1mqs_A 239 KLRDFVINTNSSSTSTLQGNDSLERGVLIILDRNIDFASMFSHSWIYQCMVFDIFKLSRNTVTIPLESKENGTDNTTAKP 318 (671)
T ss_dssp HHHHHHHTTCC------------CCCEEEEEEGGGCSHHHHCCCCBHHHHHHHHTTCCSSCEEECC--------------
T ss_pred HHHHHHhhccccccccccCCCCCCCCEEEEecCCccchhhhcccchHHHHHHHHhhccCCEEEEeccCCCcccccccccc
Confidence 555442221 122 123578999999999999999999999999999999999999998632211 01
Q ss_pred CcceeEecCCCChHHHHhhhCcHHHHHHHHHHHHHHHHHHhHHHHhhh--ccc------CCCCCCHHHHHHHHHhcccch
Q 006048 301 PEKKEVLLEEHDPLWLELRHAHIADASERLHEKMTSFISKNKAAQIQH--SAR------DGGELSTKDLQKMVQALPQYS 372 (663)
Q Consensus 301 ~~~k~~~l~~~D~~~~~~R~~h~~~v~~~l~~~~~~~~~~~~~~~~~~--~~~------~~~~~s~~e~~~~v~~lp~~~ 372 (663)
.++|++.|+++|+||.++||+||++|+..|.+++++|+++++ ++++ +.. .....+++||++||++||+|+
T Consensus 319 ~~~k~~~L~~~D~~w~~~r~~~f~~v~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~s~~~lk~~V~~LP~~~ 396 (671)
T 1mqs_A 319 LATKKYDIEPNDFFWMENSHLPFPEAAENVEAALNTYKEEAA--EITRKTGVTNISDLDPNSNNDTVQIQEVVKKLPELT 396 (671)
T ss_dssp -CCEEECCCSSCTTHHHHSSSBHHHHHHHHHHHHHHHHHHHH--HHHHHC--------------------CCCCSCHHHH
T ss_pred ccceEEecCCCCHHHHHHhcccHHHHHHHHHHHHHHHHHHHH--HHhcccCccCcccccccccccHHHHHHHHHHhHHHH
Confidence 346889999999999999999999999999999999998764 2332 100 122457999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhcCCCChHHHHHhhhcCCCCChhhHHHHHHHHHHhCCCCCChhHH
Q 006048 373 DQIDKLSLHVEIAGKINKIIRELRLRELGQLEQDLVFGDAGLKDVVKFFTTNEDVSRENKLRLLMILAAIYPEKFQGEKG 452 (663)
Q Consensus 373 ~~~~~l~~H~~i~~~i~~~~~~~~l~~~~~lEq~i~~g~~~~~~~~~~i~~~~~~~~~dklRLl~L~~l~~~~gl~~~~~ 452 (663)
++++++++|++||++|++.+++++|++++++||+|+ |....+.++++|.+....+..|||||+|||++++++|++++++
T Consensus 397 ~~~~~l~~H~~ia~~l~~~i~~~~l~~~~e~EQ~l~-~~~~~~~i~~ll~~~~~~~~~dkLRLl~Ly~l~~~~g~~~~~~ 475 (671)
T 1mqs_A 397 AKKNTIDTHMNIFAALLSQLESKSLDTFFEVEQDPG-STKTRSRFLDILKDGKTNNLEDKLRSFIVLYLTSTTGLPKDFV 475 (671)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHTSCCS-SHHHHHHHHHHTTSCCSTTHHHHHHHHHHHHHHCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHh-cCchHHHHHHHHhCcCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 999999999999999999999999999999999997 4333457888997422359999999999999998328988764
Q ss_pred ---HHHHHHcCCChhHHHHHHHHHHhcCcc---c--cC---CC-C---CCC-CCccccccc-cccccccc----CCCCcc
Q 006048 453 ---QNIMKLARLQSDDITAVNNMRLLGGAS---D--IK---KS-S---TGA-FSLKFDINK-KRAVRKDR----TGEEQT 511 (663)
Q Consensus 453 ---~~llq~~g~~~~~~~~l~~L~~lg~~~---~--~~---~~-~---~~~-~~~~f~~k~-~~~~~~~~----~~~d~~ 511 (663)
++.++.+|++...+..+.++..++... . .. ++ . .++ |+..+. +. .+...... .+...-
T Consensus 476 ~~l~~~l~~~G~~~~~~~~l~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~dl~~~~~~-r~~~~~~~~g~~~~~~~v~n~ 554 (671)
T 1mqs_A 476 QNVENYFKENDYDINALKYVYKLREFMQLSNMSLQNKSLEDGSDSAFKPSNLTLSGIY-GLTEGKLQGGVGSLISGIKKL 554 (671)
T ss_dssp HHHHHHHHTTTCCCTHHHHHHHHHHHHHHHHHHSCCCCC------------------C-HHHHHTTTSSCSSSHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHhcccccccccccccccccccccccccccccHH-HHHHHHhccchhhHHHhHHhh
Confidence 556688999755566665555443111 0 00 00 0 011 211111 00 00110000 001111
Q ss_pred cccccccHHHHHHHHHHhcC-----C--CCCCCCCcccCCCCCccccccccccCCCcccccccCCCCCCccCCCCCCCCC
Q 006048 512 WQLSRFYPMIEELIEKLGKR-----E--LPKDDYPCMNEPSPTVHAKNQSAAISQPPVAHSMRSRRTPTWARPRNSDDGY 584 (663)
Q Consensus 512 y~~s~y~Pl~~~lve~~~~~-----~--l~~~~~p~i~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~~~~ 584 (663)
|+ ..+.|.++++++.++++ + ++.++||++++.... +. .+...
T Consensus 555 ~P-~~~~~~l~~ive~l~~~~~~~~k~~l~~~~y~~~~p~~~~--~~------------~~~~~---------------- 603 (671)
T 1mqs_A 555 LP-EKKTIPITNVVDAIMDPLNSSQKNLETTDSYLYIDPKITR--GS------------HTRKP---------------- 603 (671)
T ss_dssp CC-CCCCCHHHHHHHHHHCSTTSCHHHHHHHTTSEEECTTSSS--CS------------SSCCC----------------
T ss_pred CC-CcccchHHHHHHHHHhccccccccCCCccCceeeCCCCcC--CC------------CCCCc----------------
Confidence 21 34566789999999998 3 566789998632110 00 00000
Q ss_pred CccchhcccccccccCCceEEEEEEcCcCHHHHHHHHHHHhhc---CCeEEEccCcccChhHHHHHHhccCCCC
Q 006048 585 SSDSVLRHASSDFKKMGQRIFVFIVGGATRSELRVCHKLTRKL---NREIILGSTSLDDPPQFITKMKMLTVDE 655 (663)
Q Consensus 585 ~~~s~~~~~~~~~~~~~~~viVfviGGvTysEi~al~~L~~~~---~~~iiigsT~Ii~~~~fl~~l~~l~~~~ 655 (663)
.+.+.+++|||||||+||+|++++|+|+++. |++|+||||+|+||++||++|..|++..
T Consensus 604 ------------~~~~~~~viVFvVGG~Ty~E~~~l~~l~~~~~~~~~~viiGsT~I~n~~~Fl~~l~~l~~~~ 665 (671)
T 1mqs_A 604 ------------KRQSYNKSLVFVVGGGNYLEYQNLQEWAHSQLHNPKKVMYGSTAITTPAEFLNEISRLGASN 665 (671)
T ss_dssp ------------CCCCCSEEEEEEETCBCHHHHHHHHHHHTTCCSSCCEEEEEESSBCCHHHHHHHHHHHHHHT
T ss_pred ------------ccCCCCeEEEEEECCccHHHHHHHHHHHhhccCCCceEEEeeccccCHHHHHHHHHHhCccc
Confidence 0124689999999999999999999999983 7999999999999999999999998665
No 7
>1y9j_A SEC1 family domain containing protein 1; membrane traffic, SLY1, SM proteins, snares, protein protein transport; NMR {Rattus norvegicus}
Probab=99.95 E-value=1.2e-28 Score=228.68 Aligned_cols=133 Identities=25% Similarity=0.455 Sum_probs=120.4
Q ss_pred hhHHHHHHHHHHHHHHHhccCC----CCCCCeEEEEEeccchhhhhhccCchhhhhcCceEEecccCCCCCCCCCeEEEE
Q 006048 16 KNFKQISRERLLYEMLRSAKTG----TSKSTWKVLIMDKLTVKIMSHSCKMADITQEGVSLVEDIHRRRQPLPSMEAIYF 91 (663)
Q Consensus 16 ~~l~~~~r~~l~~~~l~~v~~~----~~~~~~KvLvlD~~~~~ils~~~~~s~L~e~gV~~i~~l~~~r~~~~~~~aIy~ 91 (663)
.+||+.+|+.|+ +||+..++. ...++|||||+|+.+++|||++|+++||+++||++++.|+++|+|+|+++||||
T Consensus 20 ~sLr~~qr~~l~-~mL~~~~~~~~~~~~~~~wKVLVlD~~t~~iiS~~~~~sdLl~~gVtlve~i~~~R~p~~~~~aIYf 98 (159)
T 1y9j_A 20 ASIRERQTVALK-RMLNFNVPHVKNSPGEPVWKVLIYDRFGQDIISPLLSVKELRDMGITLHLLLHSDRDPIRDVPAVYF 98 (159)
T ss_dssp CHHHHHHHHHHH-HHTTCCCSCCCSSSSCCCCEEEEECHHHHHHHTTTCCHHHHHHHTEEEEEETTSCCCCBTTSCCEEE
T ss_pred HHHHHHHHHHHH-HHHhccCCcccccccCCCcEEEEEecccHHHHHHHhCHHHHHhCCcEEEeeccCCCCCCCCCCEEEE
Confidence 479999999999 699876421 124689999999999999999999999999999999999999999999999999
Q ss_pred ecCCHHHHHHHHHHhccCCCCcceEEEEecCCCCHHHHHHHHh---cCCcccccceeEEEecc
Q 006048 92 IQPTKENVIMFLSDMSGRSPLYKKAFVFFSSPISRELVTHIKK---DSTVLPRIGALREMNLE 151 (663)
Q Consensus 92 i~Pt~~~i~~i~~d~~~~~~~y~~~~i~Ft~~vp~~~le~la~---~~~~~~~i~~i~e~~ld 151 (663)
|+||.+||++|++||++ |+|++|||||++.+|+.+++.||+ +.+..+.|++|.|+++|
T Consensus 99 v~Pt~enI~~i~~D~~~--~~Y~~y~i~Ft~~i~~~lle~LA~~~~~~d~~~~V~~V~e~y~d 159 (159)
T 1y9j_A 99 VMPTEENIDRLCQDLRN--QLYESYYLNFISAISRSKLEDIANAALAANAVTQVAKVFDQYLN 159 (159)
T ss_dssp ECCCHHHHHHHHHHHHH--TCBSEEEEEESSCCCHHHHHHHHHHHHTTTCEEEEECCSTTTCC
T ss_pred ecCCHHHHHHHHHHhhh--cccCeEEEEEcCCCCHHHHHHHHhccccCCcccceeeeehhhcC
Confidence 99999999999999975 899999999999999999999996 35678888888888765
No 8
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=36.75 E-value=49 Score=21.95 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=24.3
Q ss_pred CCHHHHHHHHHhcccchHHhhHHHHHHHHHHH
Q 006048 356 LSTKDLQKMVQALPQYSDQIDKLSLHVEIAGK 387 (663)
Q Consensus 356 ~s~~e~~~~v~~lp~~~~~~~~l~~H~~i~~~ 387 (663)
+++.++++++..|.+-..+.+++.-|+..+..
T Consensus 3 ntvkelknyiqeleernaelknlkehlkfaka 34 (46)
T 3he4_B 3 NTVKELKNYIQELEERNAELKNLKEHLKFAKA 34 (46)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhHHHHhHHHHHHHHHH
Confidence 47888889888887777777777778776643
No 9
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=26.54 E-value=37 Score=32.61 Aligned_cols=38 Identities=16% Similarity=0.213 Sum_probs=30.0
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHH
Q 006048 603 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQF 644 (663)
Q Consensus 603 ~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~f 644 (663)
.+.|.|.|||+-.-+..+.+. |.+++|.++.|+..++.
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~a----GAd~~V~GsaIf~~~d~ 210 (227)
T 1tqx_A 173 NLNIQVDGGLNIETTEISASH----GANIIVAGTSIFNAEDP 210 (227)
T ss_dssp TCEEEEESSCCHHHHHHHHHH----TCCEEEESHHHHTCSSH
T ss_pred CCeEEEECCCCHHHHHHHHHc----CCCEEEEeHHHhCCCCH
Confidence 567899999998866666543 89999999999976443
No 10
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=21.12 E-value=74 Score=29.86 Aligned_cols=44 Identities=11% Similarity=0.127 Sum_probs=36.0
Q ss_pred eEEEEEEcCc-CHHHHHHHHHHHhhcCCeEEEccCcccChhHHHHHHhc
Q 006048 603 RIFVFIVGGA-TRSELRVCHKLTRKLNREIILGSTSLDDPPQFITKMKM 650 (663)
Q Consensus 603 ~viVfviGGv-TysEi~al~~L~~~~~~~iiigsT~Ii~~~~fl~~l~~ 650 (663)
.+-|+..||| |...+..+... |.+.++.++.+..|....+.+..
T Consensus 175 ~ipvia~GGI~~~~~~~~~~~~----Gad~v~vG~al~~p~~~~~~~~~ 219 (223)
T 1y0e_A 175 DAKVIAEGNVITPDMYKRVMDL----GVHCSVVGGAITRPKEITKRFVQ 219 (223)
T ss_dssp CSEEEEESSCCSHHHHHHHHHT----TCSEEEECHHHHCHHHHHHHHHH
T ss_pred CCCEEEecCCCCHHHHHHHHHc----CCCEEEEChHHcCcHHHHHHHHH
Confidence 4678999999 88888777653 88888888999999888888764
No 11
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=20.62 E-value=38 Score=32.34 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=28.2
Q ss_pred eEEEEEEcCcCHHHHHHHHHHHhhcCCeEEEccCcccChhHH
Q 006048 603 RIFVFIVGGATRSELRVCHKLTRKLNREIILGSTSLDDPPQF 644 (663)
Q Consensus 603 ~viVfviGGvTysEi~al~~L~~~~~~~iiigsT~Ii~~~~f 644 (663)
.+-|++.||++-.-+..+... |.++++.++.|+..++.
T Consensus 173 ~~pi~v~GGI~~~ni~~~~~a----GaD~vvvGsai~~~~d~ 210 (228)
T 1h1y_A 173 SLDIEVDGGLGPSTIDVAASA----GANCIVAGSSIFGAAEP 210 (228)
T ss_dssp TSEEEEESSCSTTTHHHHHHH----TCCEEEESHHHHTSSCH
T ss_pred CCCEEEECCcCHHHHHHHHHc----CCCEEEECHHHHCCCCH
Confidence 455899999998655444332 89999999999976543
Done!