Query 006050
Match_columns 663
No_of_seqs 207 out of 3176
Neff 4.1
Searched_HMMs 46136
Date Thu Mar 28 17:38:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006050.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006050hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0853 Glycosyltransferase [C 100.0 2.5E-35 5.4E-40 321.6 10.9 387 172-662 6-402 (495)
2 TIGR03088 stp2 sugar transfera 100.0 1.5E-28 3.3E-33 251.4 30.7 290 242-662 1-309 (374)
3 cd03812 GT1_CapH_like This fam 100.0 4E-28 8.6E-33 242.5 29.9 282 244-662 1-303 (358)
4 cd03805 GT1_ALG2_like This fam 100.0 2.8E-27 6E-32 242.1 28.9 289 243-662 1-336 (392)
5 cd03819 GT1_WavL_like This fam 100.0 1.1E-26 2.4E-31 231.8 31.3 284 247-661 2-300 (355)
6 cd04962 GT1_like_5 This family 100.0 3.2E-26 7E-31 231.0 29.6 280 243-662 1-307 (371)
7 cd03807 GT1_WbnK_like This fam 100.0 5E-26 1.1E-30 221.2 29.3 284 244-662 1-305 (365)
8 cd04951 GT1_WbdM_like This fam 100.0 2E-25 4.3E-30 222.1 32.2 284 244-662 1-299 (360)
9 PRK15179 Vi polysaccharide bio 100.0 4.1E-26 9E-31 259.6 30.4 285 244-662 283-628 (694)
10 cd03796 GT1_PIG-A_like This fa 99.9 1.7E-25 3.8E-30 233.9 30.8 277 244-663 1-307 (398)
11 cd03792 GT1_Trehalose_phosphor 99.9 7.5E-26 1.6E-30 233.4 27.0 285 244-662 1-310 (372)
12 cd03811 GT1_WabH_like This fam 99.9 1.3E-24 2.9E-29 208.9 27.4 280 244-662 1-300 (353)
13 TIGR03449 mycothiol_MshA UDP-N 99.9 1.7E-24 3.7E-29 224.5 30.2 279 254-662 19-339 (405)
14 cd03821 GT1_Bme6_like This fam 99.9 1.6E-24 3.5E-29 211.4 26.2 282 244-662 1-318 (375)
15 PRK00654 glgA glycogen synthas 99.9 2.1E-24 4.6E-29 232.8 28.0 304 243-662 1-393 (466)
16 PLN02316 synthase/transferase 99.9 4.2E-24 9E-29 250.3 32.4 306 242-662 587-956 (1036)
17 cd03802 GT1_AviGT4_like This f 99.9 2.1E-24 4.6E-29 213.8 23.5 260 243-663 1-282 (335)
18 PRK10307 putative glycosyl tra 99.9 2.1E-23 4.6E-28 218.4 29.9 281 243-659 1-341 (412)
19 cd03820 GT1_amsD_like This fam 99.9 3.9E-23 8.5E-28 199.0 29.1 264 244-659 1-286 (348)
20 PRK09922 UDP-D-galactose:(gluc 99.9 5.7E-24 1.2E-28 219.6 24.2 271 243-661 1-294 (359)
21 PLN02871 UDP-sulfoquinovose:DA 99.9 3E-23 6.5E-28 223.0 30.3 276 240-662 56-368 (465)
22 PRK14099 glycogen synthase; Pr 99.9 2.8E-23 6.1E-28 227.2 30.6 308 240-662 1-406 (485)
23 TIGR02095 glgA glycogen/starch 99.9 2.2E-23 4.8E-28 224.1 29.3 305 243-662 1-402 (473)
24 TIGR02472 sucr_P_syn_N sucrose 99.9 1.8E-23 4E-28 223.4 27.3 287 253-662 24-377 (439)
25 cd03800 GT1_Sucrose_synthase T 99.9 2.7E-23 5.9E-28 210.7 27.1 278 254-661 20-338 (398)
26 TIGR02149 glgA_Coryne glycogen 99.9 1.1E-22 2.4E-27 208.0 30.0 279 243-662 1-317 (388)
27 PRK15484 lipopolysaccharide 1, 99.9 9.6E-23 2.1E-27 214.1 30.0 276 243-662 3-314 (380)
28 PLN02939 transferase, transfer 99.9 1.7E-22 3.6E-27 234.5 33.9 308 242-662 481-893 (977)
29 cd03818 GT1_ExpC_like This fam 99.9 2E-23 4.3E-28 217.9 23.7 278 244-662 1-337 (396)
30 cd03791 GT1_Glycogen_synthase_ 99.9 5.9E-23 1.3E-27 218.9 27.1 304 244-662 1-407 (476)
31 cd03795 GT1_like_4 This family 99.9 6.3E-22 1.4E-26 196.9 30.4 276 244-661 1-301 (357)
32 cd03817 GT1_UGDG_like This fam 99.9 8.3E-22 1.8E-26 192.9 30.6 280 244-662 1-315 (374)
33 cd03825 GT1_wcfI_like This fam 99.9 2.9E-22 6.3E-27 199.9 26.9 260 243-662 1-301 (365)
34 cd04955 GT1_like_6 This family 99.9 5.6E-22 1.2E-26 198.2 29.0 272 244-662 1-305 (363)
35 cd03822 GT1_ecORF704_like This 99.9 1.5E-21 3.2E-26 192.8 31.0 283 244-660 1-304 (366)
36 PRK15490 Vi polysaccharide bio 99.9 2.4E-22 5.1E-27 223.8 28.1 287 244-662 163-509 (578)
37 PRK10125 putative glycosyl tra 99.9 1.1E-22 2.3E-27 217.5 24.0 268 243-663 1-344 (405)
38 cd03808 GT1_cap1E_like This fa 99.9 8E-22 1.7E-26 190.8 27.8 273 244-662 1-300 (359)
39 PRK15427 colanic acid biosynth 99.9 9.5E-22 2.1E-26 209.4 29.9 278 243-662 1-341 (406)
40 cd03809 GT1_mtfB_like This fam 99.9 1.1E-22 2.4E-27 200.7 20.8 277 244-662 1-309 (365)
41 cd03816 GT1_ALG1_like This fam 99.9 1.3E-21 2.8E-26 208.1 30.2 296 243-662 4-354 (415)
42 PRK14098 glycogen synthase; Pr 99.9 1.1E-21 2.4E-26 214.8 28.4 305 243-662 6-418 (489)
43 cd03806 GT1_ALG11_like This fa 99.9 2.2E-21 4.7E-26 207.4 29.0 281 245-660 3-359 (419)
44 cd03794 GT1_wbuB_like This fam 99.9 4.5E-21 9.8E-26 187.3 28.3 280 244-662 1-336 (394)
45 cd05844 GT1_like_7 Glycosyltra 99.9 2.6E-21 5.6E-26 195.2 27.2 269 247-662 3-307 (367)
46 cd03799 GT1_amsK_like This is 99.9 3.5E-21 7.5E-26 191.5 27.6 275 244-662 1-298 (355)
47 cd03801 GT1_YqgM_like This fam 99.9 2.5E-21 5.5E-26 186.0 25.4 280 244-662 1-312 (374)
48 TIGR02468 sucrsPsyn_pln sucros 99.9 2.3E-21 5.1E-26 227.2 27.5 200 356-662 376-608 (1050)
49 cd03814 GT1_like_2 This family 99.9 5.3E-21 1.1E-25 188.2 25.8 271 244-662 1-303 (364)
50 PLN02949 transferase, transfer 99.9 1.4E-20 3E-25 205.6 31.0 283 242-660 33-389 (463)
51 cd03823 GT1_ExpE7_like This fa 99.9 5.2E-21 1.1E-25 187.3 24.4 268 244-662 1-300 (359)
52 cd03798 GT1_wlbH_like This fam 99.9 1.4E-20 3.1E-25 182.2 26.9 279 245-661 1-314 (377)
53 TIGR02470 sucr_synth sucrose s 99.9 1.5E-20 3.2E-25 216.2 30.8 320 230-662 243-680 (784)
54 PLN02846 digalactosyldiacylgly 99.9 5.1E-21 1.1E-25 209.6 25.6 271 241-660 3-335 (462)
55 PLN02275 transferase, transfer 99.9 1.3E-19 2.9E-24 189.7 28.5 284 252-662 12-346 (371)
56 cd03813 GT1_like_3 This family 99.9 3.5E-20 7.5E-25 200.7 21.4 213 310-662 172-407 (475)
57 PLN02501 digalactosyldiacylgly 99.8 2.1E-19 4.6E-24 203.5 24.9 206 309-661 432-654 (794)
58 PLN00142 sucrose synthase 99.8 2.9E-19 6.3E-24 206.0 26.1 66 595-662 631-703 (815)
59 cd03804 GT1_wbaZ_like This fam 99.8 4.8E-19 1E-23 180.2 24.5 57 603-662 239-297 (351)
60 TIGR03087 stp1 sugar transfera 99.8 3.9E-19 8.5E-24 186.2 22.0 266 245-658 1-331 (397)
61 TIGR02918 accessory Sec system 99.8 1.2E-18 2.5E-23 192.2 22.3 161 359-661 268-429 (500)
62 KOG1111 N-acetylglucosaminyltr 99.8 3.8E-19 8.1E-24 188.3 17.1 268 252-662 12-308 (426)
63 PHA01630 putative group 1 glyc 99.8 1.1E-17 2.4E-22 175.3 23.2 227 264-662 19-246 (331)
64 PHA01633 putative glycosyl tra 99.8 6.3E-18 1.4E-22 178.8 20.4 166 357-662 88-260 (335)
65 cd04949 GT1_gtfA_like This fam 99.8 2E-17 4.4E-22 169.2 21.1 157 359-658 155-311 (372)
66 cd04946 GT1_AmsK_like This fam 99.8 6.9E-17 1.5E-21 171.7 23.4 167 355-662 177-347 (407)
67 cd01635 Glycosyltransferase_GT 99.7 2.8E-16 6.2E-21 144.9 21.4 64 597-662 152-218 (229)
68 cd03785 GT1_MurG MurG is an N- 99.7 7.9E-16 1.7E-20 156.3 23.5 255 248-659 3-282 (350)
69 PRK00726 murG undecaprenyldiph 99.7 1.2E-15 2.5E-20 157.1 23.3 255 243-658 2-281 (357)
70 PRK05749 3-deoxy-D-manno-octul 99.7 9.8E-15 2.1E-19 154.8 25.8 273 246-657 52-352 (425)
71 TIGR01133 murG undecaprenyldip 99.7 4.5E-15 9.7E-20 150.7 21.9 253 243-659 1-280 (348)
72 cd03788 GT1_TPS Trehalose-6-Ph 99.7 3.5E-15 7.5E-20 162.6 20.1 235 311-661 131-400 (460)
73 PF00534 Glycos_transf_1: Glyc 99.7 1E-15 2.2E-20 140.9 12.6 124 430-661 2-128 (172)
74 TIGR02400 trehalose_OtsA alpha 99.6 5.1E-14 1.1E-18 154.2 21.1 188 360-661 182-395 (456)
75 PRK13609 diacylglycerol glucos 99.6 3E-13 6.5E-18 141.0 23.4 263 242-656 4-300 (380)
76 cd03793 GT1_Glycogen_synthase_ 99.6 2.1E-13 4.6E-18 153.0 22.7 44 616-661 467-510 (590)
77 PLN02605 monogalactosyldiacylg 99.5 3.2E-13 7E-18 142.3 18.9 160 358-657 147-310 (382)
78 COG0297 GlgA Glycogen synthase 99.5 9E-12 1.9E-16 138.1 27.3 192 358-661 205-404 (487)
79 cd04950 GT1_like_1 Glycosyltra 99.5 4.3E-12 9.2E-17 133.2 21.7 56 605-660 253-313 (373)
80 PLN03063 alpha,alpha-trehalose 99.4 6.1E-12 1.3E-16 146.4 19.3 186 360-661 202-415 (797)
81 PRK13608 diacylglycerol glucos 99.4 2.4E-11 5.3E-16 129.1 19.9 54 598-657 248-301 (391)
82 PRK00025 lpxB lipid-A-disaccha 99.4 3E-11 6.5E-16 125.4 19.7 51 594-655 235-286 (380)
83 PRK14501 putative bifunctional 99.3 8E-12 1.7E-16 143.5 14.0 187 360-661 188-402 (726)
84 cd03786 GT1_UDP-GlcNAc_2-Epime 99.3 1.5E-10 3.2E-15 118.8 18.6 160 359-657 139-304 (363)
85 COG0438 RfaG Glycosyltransfera 99.3 4.8E-11 1E-15 112.3 13.6 65 595-661 246-312 (381)
86 TIGR00215 lpxB lipid-A-disacch 99.3 4.6E-10 9.9E-15 120.0 21.3 258 243-655 6-292 (385)
87 TIGR02398 gluc_glyc_Psyn gluco 99.2 5.1E-10 1.1E-14 124.4 20.7 188 361-662 188-422 (487)
88 TIGR00236 wecB UDP-N-acetylglu 99.1 4.3E-09 9.4E-14 109.6 19.0 54 600-660 249-305 (365)
89 PF13692 Glyco_trans_1_4: Glyc 99.1 3.1E-10 6.8E-15 100.9 6.9 51 606-657 53-103 (135)
90 KOG1387 Glycosyltransferase [C 98.9 1.4E-07 3.1E-12 101.0 22.3 80 576-659 309-390 (465)
91 PF13439 Glyco_transf_4: Glyco 98.8 4.4E-08 9.4E-13 88.1 10.4 142 248-403 5-176 (177)
92 PLN03064 alpha,alpha-trehalose 98.6 2.4E-06 5.2E-11 101.6 20.7 98 361-475 287-395 (934)
93 TIGR03590 PseG pseudaminic aci 98.5 2.9E-05 6.3E-10 80.1 23.8 52 595-656 216-267 (279)
94 PRK09814 beta-1,6-galactofuran 98.4 1.7E-05 3.7E-10 83.0 20.0 57 604-661 205-272 (333)
95 TIGR03713 acc_sec_asp1 accesso 98.3 4.5E-06 9.7E-11 93.8 11.1 45 606-653 409-455 (519)
96 PF13579 Glyco_trans_4_4: Glyc 98.3 7.3E-06 1.6E-10 72.6 10.2 134 255-397 1-160 (160)
97 PRK12446 undecaprenyldiphospho 98.2 0.00025 5.5E-09 75.6 22.7 44 607-656 235-279 (352)
98 TIGR02919 accessory Sec system 98.2 1.4E-05 3E-10 88.4 12.0 61 593-658 319-380 (438)
99 TIGR02094 more_P_ylases alpha- 98.1 5.4E-05 1.2E-09 86.8 16.2 81 576-658 428-512 (601)
100 PF05693 Glycogen_syn: Glycoge 97.6 0.0012 2.6E-08 75.8 16.1 43 616-660 462-504 (633)
101 TIGR03568 NeuC_NnaA UDP-N-acet 97.6 0.032 7E-07 60.0 26.2 44 605-655 261-306 (365)
102 PF13528 Glyco_trans_1_3: Glyc 97.4 0.04 8.7E-07 56.3 22.6 49 605-659 231-280 (318)
103 cd03784 GT1_Gtf_like This fami 97.4 0.052 1.1E-06 57.5 23.7 48 603-657 285-332 (401)
104 PF00982 Glyco_transf_20: Glyc 97.4 0.0059 1.3E-07 68.6 16.7 177 361-651 197-398 (474)
105 COG0707 MurG UDP-N-acetylgluco 97.3 0.037 8E-07 60.2 21.2 43 608-656 237-279 (357)
106 cd04299 GT1_Glycogen_Phosphory 97.3 0.003 6.5E-08 74.7 13.7 84 576-660 517-603 (778)
107 KOG2941 Beta-1,4-mannosyltrans 97.2 0.074 1.6E-06 58.3 22.3 69 592-662 305-378 (444)
108 PF02684 LpxB: Lipid-A-disacch 97.2 0.056 1.2E-06 59.3 21.5 52 595-655 234-285 (373)
109 COG1519 KdtA 3-deoxy-D-manno-o 97.1 0.34 7.3E-06 54.2 26.7 201 242-475 47-261 (419)
110 PF13477 Glyco_trans_4_2: Glyc 97.1 0.019 4.2E-07 51.6 14.1 95 244-346 1-108 (139)
111 COG3914 Spy Predicted O-linked 97.1 0.085 1.8E-06 60.7 21.9 282 223-655 242-537 (620)
112 PF13844 Glyco_transf_41: Glyc 96.8 0.0058 1.2E-07 68.7 10.2 64 592-658 327-393 (468)
113 PRK10117 trehalose-6-phosphate 96.8 0.016 3.4E-07 65.4 13.3 97 361-475 179-287 (474)
114 COG0380 OtsA Trehalose-6-phosp 96.6 0.062 1.3E-06 60.9 16.4 100 360-475 202-314 (486)
115 PRK01021 lpxB lipid-A-disaccha 96.6 0.39 8.4E-06 56.0 22.7 31 617-654 482-512 (608)
116 PF04007 DUF354: Protein of un 96.6 0.29 6.2E-06 53.1 20.3 44 608-658 233-276 (335)
117 PLN02205 alpha,alpha-trehalose 96.5 0.023 4.9E-07 68.2 13.1 100 361-475 257-371 (854)
118 COG0763 LpxB Lipid A disacchar 96.4 0.32 7E-06 53.7 19.5 33 616-655 257-289 (381)
119 PF13524 Glyco_trans_1_2: Glyc 95.5 0.008 1.7E-07 51.3 2.0 33 627-661 2-34 (92)
120 PF09314 DUF1972: Domain of un 95.1 0.94 2E-05 45.6 15.6 149 243-398 2-184 (185)
121 COG0381 WecB UDP-N-acetylgluco 95.0 3.7 8E-05 45.7 20.9 50 600-656 256-307 (383)
122 TIGR03492 conserved hypothetic 94.7 0.19 4.2E-06 54.9 10.3 43 607-656 280-322 (396)
123 PF06258 Mito_fiss_Elm1: Mitoc 94.3 9.2 0.0002 41.2 21.6 57 598-659 201-259 (311)
124 PF04101 Glyco_tran_28_C: Glyc 93.9 0.089 1.9E-06 49.6 5.1 45 606-656 55-99 (167)
125 TIGR01426 MGT glycosyltransfer 93.0 0.88 1.9E-05 48.5 11.2 46 604-656 273-318 (392)
126 COG3980 spsG Spore coat polysa 92.9 4.5 9.7E-05 43.9 16.0 62 574-652 188-249 (318)
127 PF05159 Capsule_synth: Capsul 91.4 2.8 6.1E-05 43.0 12.3 44 606-657 182-226 (269)
128 TIGR00661 MJ1255 conserved hyp 91.0 0.38 8.3E-06 50.3 5.6 49 604-658 227-276 (321)
129 PF04464 Glyphos_transf: CDP-G 89.4 22 0.00047 37.9 17.3 48 602-656 248-295 (369)
130 TIGR02195 heptsyl_trn_II lipop 78.4 28 0.00061 36.6 12.0 40 608-654 234-275 (334)
131 cd03789 GT1_LPS_heptosyltransf 78.2 17 0.00037 37.2 10.1 54 595-655 168-223 (279)
132 PRK14986 glycogen phosphorylas 77.5 20 0.00043 43.7 11.6 57 603-659 617-677 (815)
133 PF00343 Phosphorylase: Carboh 75.9 79 0.0017 38.3 15.8 57 603-659 518-578 (713)
134 PRK10422 lipopolysaccharide co 75.2 27 0.00059 37.2 11.0 53 596-655 233-287 (352)
135 cd04300 GT1_Glycogen_Phosphory 73.8 25 0.00053 42.9 11.1 56 604-659 605-664 (797)
136 TIGR02093 P_ylase glycogen/sta 73.7 16 0.00034 44.4 9.5 56 604-659 602-661 (794)
137 PF03033 Glyco_transf_28: Glyc 73.6 5.5 0.00012 35.9 4.6 45 256-303 10-54 (139)
138 COG1819 Glycosyl transferases, 73.2 20 0.00044 39.7 9.7 49 242-295 1-49 (406)
139 PF07429 Glyco_transf_56: 4-al 68.6 2.1E+02 0.0045 32.2 22.6 69 587-658 227-298 (360)
140 PRK14985 maltodextrin phosphor 64.2 22 0.00048 43.2 8.1 53 607-659 609-663 (798)
141 PRK14089 ipid-A-disaccharide s 63.8 4.4 9.6E-05 44.2 2.2 32 616-654 228-259 (347)
142 PRK02797 4-alpha-L-fucosyltran 63.2 48 0.001 36.5 9.7 79 573-657 175-258 (322)
143 PF02350 Epimerase_2: UDP-N-ac 62.6 15 0.00032 39.8 5.9 53 592-655 228-283 (346)
144 COG3660 Predicted nucleoside-d 60.6 2.6E+02 0.0057 30.7 22.3 56 600-660 218-276 (329)
145 PRK14106 murD UDP-N-acetylmura 60.3 27 0.00059 38.3 7.5 71 241-320 4-77 (450)
146 PRK10916 ADP-heptose:LPS hepto 59.8 1E+02 0.0023 32.7 11.5 40 608-654 244-285 (348)
147 PRK01710 murD UDP-N-acetylmura 59.2 31 0.00068 38.4 7.8 79 234-321 6-87 (458)
148 PF08323 Glyco_transf_5: Starc 57.4 18 0.00038 37.2 5.1 38 244-281 1-42 (245)
149 TIGR02201 heptsyl_trn_III lipo 57.3 1.3E+02 0.0029 31.7 11.8 53 596-655 231-285 (344)
150 PRK06718 precorrin-2 dehydroge 56.9 42 0.00091 33.8 7.6 69 241-319 9-78 (202)
151 TIGR01470 cysG_Nterm siroheme 53.5 48 0.001 33.5 7.4 70 241-320 8-78 (205)
152 PF10087 DUF2325: Uncharacteri 52.9 22 0.00048 31.5 4.3 68 593-661 13-87 (97)
153 PF01075 Glyco_transf_9: Glyco 51.2 95 0.0021 30.9 9.0 42 607-655 165-208 (247)
154 PRK10964 ADP-heptose:LPS hepto 51.0 1.1E+02 0.0024 32.1 9.9 42 607-655 235-278 (322)
155 PRK05282 (alpha)-aspartyl dipe 49.4 1.2E+02 0.0027 31.6 9.8 67 587-659 46-123 (233)
156 PF03016 Exostosin: Exostosin 48.3 64 0.0014 33.0 7.4 42 616-659 229-271 (302)
157 PRK05562 precorrin-2 dehydroge 48.2 70 0.0015 33.3 7.7 78 233-319 14-93 (223)
158 PRK06719 precorrin-2 dehydroge 48.2 62 0.0013 31.4 7.0 66 241-319 12-78 (157)
159 COG1647 Esterase/lipase [Gener 47.4 34 0.00073 36.2 5.2 51 242-294 14-64 (243)
160 PF10649 DUF2478: Protein of u 45.8 31 0.00068 34.2 4.5 39 617-655 86-129 (159)
161 TIGR03264 met_CoM_red_C methyl 44.8 38 0.00082 34.7 5.0 59 231-290 22-80 (194)
162 PF00070 Pyr_redox: Pyridine n 43.5 42 0.00091 28.1 4.4 42 259-300 9-60 (80)
163 KOG1021 Acetylglucosaminyltran 42.6 1.6E+02 0.0034 33.6 10.0 66 591-658 304-377 (464)
164 COG0058 GlgP Glucan phosphoryl 42.3 2.1E+02 0.0046 35.0 11.3 62 598-659 549-612 (750)
165 PRK01438 murD UDP-N-acetylmura 40.8 82 0.0018 35.1 7.4 70 242-321 16-88 (480)
166 PF03358 FMN_red: NADPH-depend 40.2 70 0.0015 29.6 5.8 40 243-282 1-41 (152)
167 TIGR00460 fmt methionyl-tRNA f 40.0 84 0.0018 33.7 7.1 69 243-318 1-85 (313)
168 PRK06988 putative formyltransf 40.0 57 0.0012 35.1 5.8 69 243-318 3-84 (312)
169 TIGR01081 mpl UDP-N-acetylmura 39.6 39 0.00085 37.4 4.7 66 252-321 5-70 (448)
170 COG3563 KpsC Capsule polysacch 39.0 38 0.00083 39.4 4.5 48 603-658 205-253 (671)
171 COG4671 Predicted glycosyl tra 37.9 96 0.0021 35.0 7.1 43 606-654 277-319 (400)
172 KOG3742 Glycogen synthase [Car 37.8 10 0.00022 43.6 -0.2 43 616-660 493-535 (692)
173 PHA03392 egt ecdysteroid UDP-g 37.6 45 0.00098 38.2 4.8 47 604-657 344-392 (507)
174 PF04230 PS_pyruv_trans: Polys 37.0 56 0.0012 31.5 4.8 35 616-657 250-284 (286)
175 TIGR02193 heptsyl_trn_I lipopo 36.8 3.5E+02 0.0076 28.2 10.9 40 609-655 238-279 (319)
176 COG1819 Glycosyl transferases, 36.6 44 0.00095 37.2 4.4 48 604-658 282-329 (406)
177 PRK13811 orotate phosphoribosy 36.6 1.1E+02 0.0024 30.1 6.7 56 241-299 103-160 (170)
178 PRK00421 murC UDP-N-acetylmura 35.1 85 0.0019 35.0 6.4 71 241-322 6-77 (461)
179 PF12000 Glyco_trans_4_3: Gkyc 34.2 79 0.0017 31.7 5.3 37 359-402 133-169 (171)
180 PF13614 AAA_31: AAA domain; P 34.0 1.1E+02 0.0024 28.1 6.0 42 244-285 1-42 (157)
181 PRK02472 murD UDP-N-acetylmura 33.5 1.5E+02 0.0032 32.6 7.9 72 242-321 5-78 (447)
182 TIGR01279 DPOR_bchN light-inde 33.4 72 0.0016 35.4 5.5 80 234-320 266-352 (407)
183 KOG1050 Trehalose-6-phosphate 32.6 2.9E+02 0.0063 33.8 10.5 35 441-475 274-308 (732)
184 PF00201 UDPGT: UDP-glucoronos 32.4 2.2E+02 0.0048 31.6 9.1 47 605-656 322-368 (500)
185 TIGR03609 S_layer_CsaB polysac 32.2 1.4E+02 0.003 31.0 7.1 54 595-655 222-275 (298)
186 PRK05569 flavodoxin; Provision 32.1 1.7E+02 0.0036 27.0 6.8 56 243-321 2-58 (141)
187 PF03853 YjeF_N: YjeF-related 32.1 1.6E+02 0.0035 28.7 7.1 73 242-317 25-105 (169)
188 cd05017 SIS_PGI_PMI_1 The memb 32.0 1.3E+02 0.0027 27.3 6.0 55 240-299 41-95 (119)
189 PF12146 Hydrolase_4: Putative 32.0 99 0.0022 26.7 5.0 35 243-279 16-50 (79)
190 PRK04308 murD UDP-N-acetylmura 32.0 2.1E+02 0.0045 31.7 8.7 71 242-321 5-77 (445)
191 TIGR01426 MGT glycosyltransfer 31.8 49 0.0011 35.4 3.8 38 259-299 10-47 (392)
192 TIGR01832 kduD 2-deoxy-D-gluco 31.7 79 0.0017 31.0 4.9 25 255-279 12-36 (248)
193 PRK13886 conjugal transfer pro 31.4 5.6E+02 0.012 27.1 11.2 42 243-284 2-43 (241)
194 PRK13809 orotate phosphoribosy 31.3 1.7E+02 0.0037 30.0 7.3 56 241-299 117-174 (206)
195 PRK00005 fmt methionyl-tRNA fo 30.4 1.5E+02 0.0031 31.8 7.0 69 243-318 1-85 (309)
196 PRK03767 NAD(P)H:quinone oxido 30.3 2.1E+02 0.0046 28.4 7.7 74 243-320 2-78 (200)
197 COG0859 RfaF ADP-heptose:LPS h 30.3 1.1E+02 0.0023 32.8 6.0 56 592-656 220-277 (334)
198 PRK02842 light-independent pro 30.2 85 0.0018 35.1 5.4 79 235-320 283-369 (427)
199 PHA03392 egt ecdysteroid UDP-g 29.9 81 0.0018 36.2 5.3 38 241-280 19-57 (507)
200 PRK13054 lipid kinase; Reviewe 29.5 1.5E+02 0.0032 31.3 6.8 43 240-284 1-43 (300)
201 PRK13397 3-deoxy-7-phosphohept 29.1 3.1E+02 0.0067 29.3 8.9 59 594-657 70-130 (250)
202 PRK06179 short chain dehydroge 29.1 1.4E+02 0.0029 30.0 6.2 35 240-279 1-35 (270)
203 PF12038 DUF3524: Domain of un 29.0 5E+02 0.011 26.4 9.9 125 243-381 1-139 (168)
204 PRK03803 murD UDP-N-acetylmura 28.7 1.9E+02 0.004 32.1 7.7 75 239-321 2-78 (448)
205 COG1817 Uncharacterized protei 28.5 8.9E+02 0.019 27.3 17.5 38 261-299 16-53 (346)
206 TIGR01007 eps_fam capsular exo 28.3 1.8E+02 0.0039 28.5 6.7 44 241-284 15-58 (204)
207 COG0461 PyrE Orotate phosphori 28.0 1.2E+02 0.0026 31.3 5.6 70 225-300 97-169 (201)
208 PRK13810 orotate phosphoribosy 27.8 1.6E+02 0.0034 29.8 6.3 56 241-299 121-178 (187)
209 TIGR01361 DAHP_synth_Bsub phos 27.8 2.2E+02 0.0047 30.2 7.6 60 594-658 80-141 (260)
210 COG4671 Predicted glycosyl tra 27.8 2.5E+02 0.0055 31.9 8.3 56 240-298 7-65 (400)
211 PRK14573 bifunctional D-alanyl 27.1 1.4E+02 0.0029 36.2 6.7 64 253-322 11-74 (809)
212 PF01408 GFO_IDH_MocA: Oxidore 27.1 1E+02 0.0023 27.1 4.5 52 595-655 39-92 (120)
213 COG0223 Fmt Methionyl-tRNA for 26.4 2.1E+02 0.0046 31.4 7.3 69 243-318 2-86 (307)
214 COG2327 WcaK Polysaccharide py 26.0 2E+02 0.0043 32.6 7.2 56 594-656 254-311 (385)
215 CHL00073 chlN photochlorophyll 25.9 1.7E+02 0.0036 33.8 6.7 82 231-319 303-399 (457)
216 smart00851 MGS MGS-like domain 25.9 1.1E+02 0.0023 26.6 4.2 54 261-319 2-63 (90)
217 PRK06194 hypothetical protein; 25.8 1.9E+02 0.0041 29.3 6.6 25 255-279 13-37 (287)
218 TIGR00853 pts-lac PTS system, 25.4 1.2E+02 0.0025 27.4 4.4 65 590-658 18-84 (95)
219 COG2910 Putative NADH-flavin r 25.0 1.6E+02 0.0035 30.7 5.8 54 260-317 12-68 (211)
220 PF04609 MCR_C: Methyl-coenzym 24.8 89 0.0019 33.6 4.1 53 233-285 60-113 (268)
221 PRK12429 3-hydroxybutyrate deh 24.7 1.4E+02 0.003 29.3 5.3 21 259-279 15-35 (258)
222 PF02441 Flavoprotein: Flavopr 24.4 77 0.0017 29.3 3.2 37 243-283 1-37 (129)
223 PRK09739 hypothetical protein; 24.4 1.8E+02 0.004 28.7 6.0 43 240-282 1-44 (199)
224 PRK08125 bifunctional UDP-gluc 24.1 2E+02 0.0043 33.9 7.1 69 243-318 1-82 (660)
225 cd05014 SIS_Kpsf KpsF-like pro 23.9 1.5E+02 0.0033 26.5 4.9 44 241-287 46-89 (128)
226 PHA02518 ParA-like protein; Pr 23.9 2.5E+02 0.0053 27.1 6.7 45 245-289 2-46 (211)
227 PRK06182 short chain dehydroge 23.6 2.4E+02 0.0053 28.4 6.9 38 260-299 15-52 (273)
228 PLN02173 UDP-glucosyl transfer 23.6 88 0.0019 35.5 4.1 45 605-654 316-360 (449)
229 COG1648 CysG Siroheme synthase 23.2 1.6E+02 0.0035 30.3 5.5 70 241-319 11-80 (210)
230 PRK06463 fabG 3-ketoacyl-(acyl 23.2 3.3E+02 0.0071 27.1 7.6 39 260-299 19-57 (255)
231 PF03447 NAD_binding_3: Homose 23.2 32 0.0007 30.9 0.4 45 615-661 49-95 (117)
232 PF11169 DUF2956: Protein of u 22.6 40 0.00086 31.6 0.9 19 67-85 83-101 (103)
233 PRK01372 ddl D-alanine--D-alan 22.5 1.5E+02 0.0032 30.7 5.2 40 240-279 2-43 (304)
234 TIGR00064 ftsY signal recognit 22.4 4.1E+02 0.009 28.1 8.5 77 242-319 71-162 (272)
235 PRK08993 2-deoxy-D-gluconate 3 22.4 2.3E+02 0.0049 28.3 6.3 31 244-279 11-41 (253)
236 PF01738 DLH: Dienelactone hyd 22.4 1.4E+02 0.0031 29.1 4.8 41 242-284 13-53 (218)
237 COG0673 MviM Predicted dehydro 22.3 1.8E+02 0.004 30.2 5.8 52 595-654 43-96 (342)
238 PRK10637 cysG siroheme synthas 22.3 2.8E+02 0.0061 31.4 7.6 66 241-319 11-80 (457)
239 PF13241 NAD_binding_7: Putati 22.2 2.1E+02 0.0046 25.5 5.5 63 241-319 6-68 (103)
240 TIGR01082 murC UDP-N-acetylmur 22.0 1.3E+02 0.0028 33.5 4.9 58 260-321 10-68 (448)
241 cd05008 SIS_GlmS_GlmD_1 SIS (S 21.9 1.5E+02 0.0034 26.4 4.6 38 241-281 45-82 (126)
242 PRK13812 orotate phosphoribosy 21.9 2.3E+02 0.0051 28.1 6.2 56 241-299 106-163 (176)
243 TIGR01285 nifN nitrogenase mol 21.8 1.7E+02 0.0037 33.0 5.8 82 231-320 300-382 (432)
244 PF01380 SIS: SIS domain SIS d 21.7 1.3E+02 0.0029 26.6 4.1 36 241-279 52-87 (131)
245 PRK05993 short chain dehydroge 21.6 1.9E+02 0.0041 29.4 5.7 50 243-299 4-53 (277)
246 PRK00207 sulfur transfer compl 21.5 1.7E+02 0.0037 27.6 4.9 37 243-279 1-39 (128)
247 PRK14478 nitrogenase molybdenu 21.3 2.1E+02 0.0047 32.6 6.5 80 234-320 316-402 (475)
248 TIGR02026 BchE magnesium-proto 21.3 1.1E+02 0.0023 35.0 4.2 37 244-280 1-45 (497)
249 PRK12481 2-deoxy-D-gluconate 3 21.2 1.9E+02 0.0042 28.9 5.5 31 243-278 8-38 (251)
250 cd03409 Chelatase_Class_II Cla 21.2 3.7E+02 0.008 23.1 6.7 38 245-282 2-42 (101)
251 TIGR03371 cellulose_yhjQ cellu 21.1 2E+02 0.0044 28.5 5.7 42 243-284 1-42 (246)
252 PRK06128 oxidoreductase; Provi 21.0 3.7E+02 0.0081 27.8 7.8 21 260-280 67-87 (300)
253 PRK02006 murD UDP-N-acetylmura 20.7 2.4E+02 0.0051 31.9 6.7 71 242-321 7-79 (498)
254 TIGR00715 precor6x_red precorr 20.3 6.7E+02 0.015 26.5 9.5 57 261-319 12-73 (256)
255 PRK11914 diacylglycerol kinase 20.2 2.1E+02 0.0046 30.1 5.8 43 240-282 6-49 (306)
256 PLN00414 glycosyltransferase f 20.2 1.9E+02 0.0042 32.7 5.9 40 241-281 2-41 (446)
257 KOG4626 O-linked N-acetylgluco 20.2 4.7E+02 0.01 32.1 8.9 59 595-656 804-865 (966)
258 PLN03004 UDP-glycosyltransfera 20.0 85 0.0019 35.7 3.0 37 244-281 4-42 (451)
No 1
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=2.5e-35 Score=321.65 Aligned_cols=387 Identities=23% Similarity=0.175 Sum_probs=318.0
Q ss_pred CCCCCCcccee-eEeeccchhhcCCCCCCCCcccceeeccCCcchhhhccccccccccccCCccccccccCCCeEEEEeC
Q 006050 172 RGKGRGKQKAK-LDVESNYMEAQLPEIPMTNASYGLLVGPFGLTEDRILEWSPEKRSGTCDRKGDFARFVWSRKFILIFH 250 (663)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~k~~~~~~~~~kKILLI~h 250 (663)
....+-.||.. ..++..+..++.|+.|..+.+|+...+++|.-|+++++|++...+ +|+ +-. .++++++.++++.|
T Consensus 6 ~~~~~~~qk~~~~~m~~~~~~~~t~~~~~~~~~~~~~~~~~gg~er~~v~~~~~l~s-~~~-~lg-~~d~G~qV~~l~~h 82 (495)
T KOG0853|consen 6 SSNISELQKVLWKAMIEKSLLVSTPEKPFEHVTFIHPDLGIGGAERLVVDAAVHLLS-GQD-VLG-LPDTGGQVVYLTSH 82 (495)
T ss_pred hhHHHHhhhhhhhhhhhhhcccccccccchhheeeccccccCchHHHhHHHHHHHHh-ccc-ccC-CCCCCceEEEEehh
Confidence 34455566664 333344444788999999999999999999999999999999999 899 666 89999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHH-CCCeEEEEEEcCCCC--ChhHHhcCCeEEEeCCCCchhhhhcCccEEEECchhhHHHHH
Q 006050 251 ELSMTGAPLSMMELATELLS-CGATVSAVVLSKRGG--LMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWID 327 (663)
Q Consensus 251 eLs~gGAp~smmeLA~~L~s-~G~~V~vVvLs~~Gg--L~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianSav~aswi~ 327 (663)
..+++ +|.+++.++..|.- ++..|+...+++..+ +++....++++++..+....++.++++|+|+.+.+.|+.|+.
T Consensus 83 ~~al~-~~~~~~~~~~~l~~~~~i~vv~~~lP~~~~~~~~~~~~~~~~~il~~~~~~~~k~~~~~d~~i~d~~~~~~~l~ 161 (495)
T KOG0853|consen 83 EDALE-MPLLLRCFAETLDGTPPILVVGDWLPRAMGQFLEQVAGCAYLRILRIPFGILFKWAEKVDPIIEDFVSACVPLL 161 (495)
T ss_pred hhhhc-chHHHHHHHHHhcCCCceEEEEeecCcccchhhhhhhccceeEEEEeccchhhhhhhhhceeecchHHHHHHHH
Confidence 99999 99999999999986 888888888887764 677778899999998888888888999999999999999999
Q ss_pred HHHHhCCCCCccEEEEEeehhhhhHHHH--HHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhh
Q 006050 328 QYITRFPAGGSQVVWWIMENRREYFDRA--KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFV 405 (663)
Q Consensus 328 ~yi~~~pa~~~~vvwwi~E~r~~yf~r~--k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~v 405 (663)
+++.+ |....+++||+|+.+..|+++. ...+.+...-.+-++.+..+|..++....+....+...+++++++....+
T Consensus 162 ~~~~~-p~~~~~i~~~~h~~~~lla~r~g~~~~l~~~~l~~~e~e~~~~~~~~~~ns~~~~~~f~~~~~~L~~~d~~~~y 240 (495)
T KOG0853|consen 162 KQLSG-PDVIIKIYFYCHFPDSLLAKRLGVLKVLYRHALDKIEEETTGLAWKILVNSYFTKRQFKATFVSLSNSDITSTY 240 (495)
T ss_pred HHhcC-CcccceeEEeccchHHHhccccCccceeehhhhhhhhhhhhhccceEecchhhhhhhhhhhhhhcCCCCcceee
Confidence 99988 9999999999999999998752 22233333334458888999999988777776677889999999887888
Q ss_pred hccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccc
Q 006050 406 AGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRN 485 (663)
Q Consensus 406 agi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~ 485 (663)
++++.+.+++ ++-+++..++..+|.+.|+...+++++.+.++.|+|+++++++|+..+....++.+
T Consensus 241 ~ei~~s~~~~-----~~~~~~~~~~~~~r~~~~v~~~d~~~~siN~~~pgkd~~l~l~a~~~~~~~i~~~~--------- 306 (495)
T KOG0853|consen 241 PEIDGSWFTY-----GQYESHLELRLPVRLYRGVSGIDRFFPSINRFEPGKDQDLALPAFTLLHDSIPEPS--------- 306 (495)
T ss_pred ccccchhccc-----cccccchhcccccceeeeecccceEeeeeeecCCCCCceeehhhHHhhhcccCCCC---------
Confidence 8877666665 23344556778889999999999999999999999999999999999866554421
Q ss_pred cccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEe
Q 006050 486 VGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSK 565 (663)
Q Consensus 486 ~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~ 565 (663)
+...| +
T Consensus 307 -------~~~~h----------------------------------------------------------------l--- 312 (495)
T KOG0853|consen 307 -------ISSEH----------------------------------------------------------------L--- 312 (495)
T ss_pred -------CCceE----------------------------------------------------------------E---
Confidence 11122 1
Q ss_pred cccccccceEEEE---eecCCCCCChhHHHHHHHHHHHhCCC-CCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHH
Q 006050 566 SDGKQQQALKILI---GSVGSKSNKVPYVKEILEFLSQHSNL-SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRV 641 (663)
Q Consensus 566 gr~~~~Kdlklli---G~~g~~~n~~~y~k~~L~~l~~~~gL-s~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~V 641 (663)
+++ |+++..++++.|+++ |..++++++| ++.|.|+..++++..++.+||+.+..++.-.|+||+|
T Consensus 313 ----------~~~g~~G~d~~~sen~~~~~e-l~~lie~~~l~g~~v~~~~s~~~~~~yrl~adt~~v~~qPa~E~FGiv 381 (495)
T KOG0853|consen 313 ----------VVAGSRGYDERDSENVEYLKE-LLSLIEEYDLLGQFVWFLPSTTRVAKYRLAADTKGVLYQPANEHFGIV 381 (495)
T ss_pred ----------EEecCCCccccchhhHHHHHH-HHHHHHHhCccCceEEEecCCchHHHHHHHHhcceEEecCCCCCccce
Confidence 222 455566778899888 7889999988 5888898999999999999999888888778999999
Q ss_pred HHHHHHcCCCEEEeCCCCccC
Q 006050 642 TIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 642 iiEAMA~GlPVVatd~~~l~~ 662 (663)
+|||||||+|||||+.||--+
T Consensus 382 ~IEAMa~glPvvAt~~GGP~E 402 (495)
T KOG0853|consen 382 PIEAMACGLPVVATNNGGPAE 402 (495)
T ss_pred eHHHHhcCCCEEEecCCCceE
Confidence 999999999999999998543
No 2
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.97 E-value=1.5e-28 Score=251.42 Aligned_cols=290 Identities=16% Similarity=0.173 Sum_probs=201.4
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCC--chh---------hhhc
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE--PSF---------KTSM 310 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~--~sf---------k~~~ 310 (663)
+++|++|++.++.||+++++++|+++|.+.|+++.++++...+.+.+++.+.+|+++..... ..+ -...
T Consensus 1 ~~~il~ii~~~~~GG~e~~~~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~l~~~ 80 (374)
T TIGR03088 1 RPLIVHVVYRFDVGGLENGLVNLINHLPADRYRHAVVALTEVSAFRKRIQRPDVAFYALHKQPGKDVAVYPQLYRLLRQL 80 (374)
T ss_pred CceEEEEeCCCCCCcHHHHHHHHHhhccccccceEEEEcCCCChhHHHHHhcCceEEEeCCCCCCChHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999998888776677778888899988754321 111 1246
Q ss_pred CccEEEECchhhHHHHHHHHHhCCCCCccEEEEEee-----hhhhh--HHHH-HHHHhcCCEEEEecHHHHHHHHHHhHh
Q 006050 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIME-----NRREY--FDRA-KLVLDRVKLLVFLSESQTKQWLTWCEE 382 (663)
Q Consensus 311 k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E-----~r~~y--f~r~-k~vl~rvk~lIflSes~~k~w~~~~~~ 382 (663)
++|+||+++..+ +...+.... .+.+..++..|. ..... +... +.....++.++++|+...++... .
T Consensus 81 ~~Divh~~~~~~--~~~~~~~~~-~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vs~~~~~~~~~---~ 154 (374)
T TIGR03088 81 RPDIVHTRNLAA--LEAQLPAAL-AGVPARIHGEHGRDVFDLDGSNWKYRWLRRLYRPLIHHYVAVSRDLEDWLRG---P 154 (374)
T ss_pred CCCEEEEcchhH--HHHHHHHHh-cCCCeEEEeecCcccccchhhHHHHHHHHHHHHhcCCeEEEeCHHHHHHHHH---h
Confidence 899999987422 222222211 112211221111 00000 1111 12234578899999987665322 2
Q ss_pred hcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHH
Q 006050 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (663)
Q Consensus 383 ~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLL 462 (663)
.++. ..+..++|+|++.+.+. +... .+...+++...+++.++|+++|++.+.||++.|+
T Consensus 155 ~~~~-~~~~~vi~ngvd~~~~~--------------~~~~------~~~~~~~~~~~~~~~~~i~~vGrl~~~Kg~~~li 213 (374)
T TIGR03088 155 VKVP-PAKIHQIYNGVDTERFH--------------PSRG------DRSPILPPDFFADESVVVGTVGRLQAVKDQPTLV 213 (374)
T ss_pred cCCC-hhhEEEeccCccccccC--------------CCcc------chhhhhHhhcCCCCCeEEEEEecCCcccCHHHHH
Confidence 2332 24678999999765321 1100 0112233445567888999999999999999999
Q ss_pred HHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcc
Q 006050 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (663)
Q Consensus 463 eA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f 542 (663)
+|+..+.++.|... +.
T Consensus 214 ~a~~~l~~~~~~~~-~~--------------------------------------------------------------- 229 (374)
T TIGR03088 214 RAFALLVRQLPEGA-ER--------------------------------------------------------------- 229 (374)
T ss_pred HHHHHHHHhCcccc-cc---------------------------------------------------------------
Confidence 99999987766420 00
Q ss_pred cccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHH
Q 006050 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS 622 (663)
Q Consensus 543 ~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lys 622 (663)
+ .++++|. |+ . ++.++.+++++++.+.|.|+|...++..+|+
T Consensus 230 -----------------~-------------~l~i~G~-g~------~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 271 (374)
T TIGR03088 230 -----------------L-------------RLVIVGD-GP------A-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ 271 (374)
T ss_pred -----------------e-------------EEEEecC-Cc------h-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH
Confidence 0 1266775 33 1 3347888889999999999999999999999
Q ss_pred HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 623 AADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 623 aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+||++|+||. .|+||++++||||||+|||+|+++++.+
T Consensus 272 ~adi~v~pS~--~Eg~~~~~lEAma~G~Pvv~s~~~g~~e 309 (374)
T TIGR03088 272 ALDLFVLPSL--AEGISNTILEAMASGLPVIATAVGGNPE 309 (374)
T ss_pred hcCEEEeccc--cccCchHHHHHHHcCCCEEEcCCCCcHH
Confidence 9999999999 9999999999999999999999998764
No 3
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=99.97 E-value=4e-28 Score=242.49 Aligned_cols=282 Identities=18% Similarity=0.201 Sum_probs=202.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC-CChhHHhcCCeEEEeCCCC--ch------h---hhhcC
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPELARRKIKVLEDRGE--PS------F---KTSMK 311 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G-gL~~eL~~~gIkVl~~~~~--~s------f---k~~~k 311 (663)
||+++.|.+..||++..+.+++++|.+.||+|++++..... .+.+.+...++.++..... .. + ....+
T Consensus 1 kIl~~~~~~~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T cd03812 1 KILHIVGTMNRGGIETFIMNYYRNLDRSKIQFDFLVTSKEEGDYDDEIEKLGGKIYYIPARKKNPLKYFKKLYKLIKKNK 80 (358)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHhcCccceEEEEEEeCCCCcchHHHHHHcCCeEEEecCCCccHHHHHHHHHHHHhcCC
Confidence 69999999999999999999999999999999998866544 2455666778877642211 11 1 12468
Q ss_pred ccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhh---h---H---HHHHHHHhcCCEEEEecHHHHHHHHHHhHh
Q 006050 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---Y---F---DRAKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (663)
Q Consensus 312 ~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~---y---f---~r~k~vl~rvk~lIflSes~~k~w~~~~~~ 382 (663)
+|+||+++.... ++..++... .+.+.++++.|..... + . ......+..++.++++|+...+... .
T Consensus 81 ~Dvv~~~~~~~~-~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~----~ 154 (358)
T cd03812 81 YDIVHVHGSSAS-GFILLAAKK-AGVKVRIAHSHNTSDSHDKKKKILKYKVLRKLINRLATDYLACSEEAGKWLF----G 154 (358)
T ss_pred CCEEEEeCcchh-HHHHHHHhh-CCCCeEEEEeccccccccccchhhHHHHHHHHHHhcCCEEEEcCHHHHHHHH----h
Confidence 999999876432 332233222 2334444455442211 0 0 0023345678889999987765532 1
Q ss_pred hcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHH
Q 006050 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (663)
Q Consensus 383 ~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLL 462 (663)
. + ...++.+||+|++.+.+.. .+ . .+.. +++.+..++.++|+++|++.+.||++.++
T Consensus 155 ~-~-~~~~~~vi~ngvd~~~~~~------------~~-~-------~~~~-~~~~~~~~~~~~i~~vGr~~~~Kg~~~li 211 (358)
T cd03812 155 K-V-KNKKFKVIPNGIDLEKFIF------------NE-E-------IRKK-RRELGILEDKFVIGHVGRFSEQKNHEFLI 211 (358)
T ss_pred C-C-CcccEEEEeccCcHHHcCC------------Cc-h-------hhhH-HHHcCCCCCCEEEEEEeccccccChHHHH
Confidence 2 2 2346899999997643210 00 0 0112 56778888999999999999999999999
Q ss_pred HHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcc
Q 006050 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (663)
Q Consensus 463 eA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f 542 (663)
+|+..+.++.|+.
T Consensus 212 ~a~~~l~~~~~~~------------------------------------------------------------------- 224 (358)
T cd03812 212 EIFAELLKKNPNA------------------------------------------------------------------- 224 (358)
T ss_pred HHHHHHHHhCCCe-------------------------------------------------------------------
Confidence 9999998776652
Q ss_pred cccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHH
Q 006050 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS 622 (663)
Q Consensus 543 ~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lys 622 (663)
-.+++|+ |+ + .+.++.++++++++++|+|+|..+++.++|+
T Consensus 225 -------------------------------~l~ivG~-g~------~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 265 (358)
T cd03812 225 -------------------------------KLLLVGD-GE------L-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQ 265 (358)
T ss_pred -------------------------------EEEEEeC-Cc------h-HHHHHHHHHhcCCCCcEEEecccCCHHHHHH
Confidence 0266775 33 1 3347778888999999999999889999999
Q ss_pred HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 623 AADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 623 aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.||++|+||. .|+||++++||||+|+|||+|+.++..+
T Consensus 266 ~adi~v~ps~--~E~~~~~~lEAma~G~PvI~s~~~~~~~ 303 (358)
T cd03812 266 AMDVFLFPSL--YEGLPLVLIEAQASGLPCILSDTITKEV 303 (358)
T ss_pred hcCEEEeccc--ccCCCHHHHHHHHhCCCEEEEcCCchhh
Confidence 9999999999 8999999999999999999999998754
No 4
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=99.96 E-value=2.8e-27 Score=242.09 Aligned_cols=289 Identities=17% Similarity=0.197 Sum_probs=193.1
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCC-ChhHHhcCCeEEEeC-----CCCch-----------
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMPELARRKIKVLED-----RGEPS----------- 305 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~Gg-L~~eL~~~gIkVl~~-----~~~~s----------- 305 (663)
|||+++.++++.||+++++.+||++|.++||+|++++...+.. ...+....++++... .....
T Consensus 1 mkIl~~~~~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 80 (392)
T cd03805 1 LRVAFIHPDLGIGGAERLVVDAALALQSRGHEVTIYTSHHDPSHCFEETKDGTLPVRVRGDWLPRSIFGRFHILCAYLRM 80 (392)
T ss_pred CeEEEECCCCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCCchhcchhccCCeeEEEEEeEEEcchhhHhHHHHHHHHHH
Confidence 6899999999999999999999999999999999987532221 223333333443221 11000
Q ss_pred --------hhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh------h----hH----H-HHHHHHhcC
Q 006050 306 --------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------E----YF----D-RAKLVLDRV 362 (663)
Q Consensus 306 --------fk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~------~----yf----~-r~k~vl~rv 362 (663)
+....++|+||+++...+.++ +.... ..++++++|.... . .+ . ..+..+..+
T Consensus 81 ~~~~~~~~~~~~~~~Dvi~~~~~~~~~~~---~~~~~--~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~a 155 (392)
T cd03805 81 LYLALYLLLLPDEKYDVFIVDQVSACVPL---LKLFS--PSKILFYCHFPDQLLAQRGSLLKRLYRKPFDWLEEFTTGMA 155 (392)
T ss_pred HHHHHHHHhcccCCCCEEEEcCcchHHHH---HHHhc--CCcEEEEEecChHHhcCCCcHHHHHHHHHHHHHHHHHhhCc
Confidence 122358999999864332222 11111 1567777763211 0 01 0 012335678
Q ss_pred CEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCC
Q 006050 363 KLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQ 442 (663)
Q Consensus 363 k~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~ 442 (663)
+.++++|+...+..... .+........+||+|++.+.+.... .. ..++.....++
T Consensus 156 d~ii~~s~~~~~~~~~~---~~~~~~~~~~vi~n~vd~~~~~~~~------------~~----------~~~~~~~~~~~ 210 (392)
T cd03805 156 DKIVVNSNFTASVFKKT---FPSLAKNPREVVYPCVDTDSFESTS------------ED----------PDPGLLIPKSG 210 (392)
T ss_pred eEEEEcChhHHHHHHHH---hcccccCCcceeCCCcCHHHcCccc------------cc----------ccccccccCCC
Confidence 99999999877764322 1111111235899999875431110 00 01223456677
Q ss_pred CEEEEEEecCCCCCCHHHHHHHHHHhHHhC---CCCChhhhhhccccccccccccccccccccccccccccccccccccc
Q 006050 443 DMLVLSLSSINPGKGQLLLVESAQLMIEQE---PSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELS 519 (663)
Q Consensus 443 ~~lVl~VGri~p~KGqdlLLeA~~~l~e~~---P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~ 519 (663)
.++|+++|++.+.||++.+++|+..+.++. |+.
T Consensus 211 ~~~i~~~grl~~~Kg~~~ll~a~~~l~~~~~~~~~~-------------------------------------------- 246 (392)
T cd03805 211 KKTFLSINRFERKKNIALAIEAFAILKDKLAEFKNV-------------------------------------------- 246 (392)
T ss_pred ceEEEEEeeecccCChHHHHHHHHHHHhhcccccCe--------------------------------------------
Confidence 889999999999999999999999997664 221
Q ss_pred cccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCC-CChhHHHHHHHHH
Q 006050 520 VSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS-NKVPYVKEILEFL 598 (663)
Q Consensus 520 ~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~-n~~~y~k~~L~~l 598 (663)
-++++|+..... +..+|.++ ++.+
T Consensus 247 ------------------------------------------------------~l~i~G~~~~~~~~~~~~~~~-l~~~ 271 (392)
T cd03805 247 ------------------------------------------------------RLVIAGGYDPRVAENVEYLEE-LQRL 271 (392)
T ss_pred ------------------------------------------------------EEEEEcCCCCCCchhHHHHHH-HHHH
Confidence 025667633221 12345444 8888
Q ss_pred HHh-CCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 599 SQH-SNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 599 ~~~-~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+++ +++.++|.|+|+.+ ++..+|++||++++||. .|+||++++||||||+|||+|++++..+
T Consensus 272 ~~~~~~l~~~V~f~g~~~~~~~~~~l~~ad~~l~~s~--~E~~g~~~lEAma~G~PvI~s~~~~~~e 336 (392)
T cd03805 272 AEELLLLEDQVIFLPSISDSQKELLLSSARALLYTPS--NEHFGIVPLEAMYAGKPVIACNSGGPLE 336 (392)
T ss_pred HHHhcCCCceEEEeCCCChHHHHHHHhhCeEEEECCC--cCCCCchHHHHHHcCCCEEEECCCCcHH
Confidence 888 99999999999987 57899999999999999 9999999999999999999999998754
No 5
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=99.96 E-value=1.1e-26 Score=231.82 Aligned_cols=284 Identities=19% Similarity=0.231 Sum_probs=201.5
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCc--h------------hhhhcCc
Q 006050 247 LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--S------------FKTSMKA 312 (663)
Q Consensus 247 LI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~--s------------fk~~~k~ 312 (663)
.|..+++.||+++.+.+||++|.++||+|.+++ ..+.+.+.+...|++++...... . +....++
T Consensus 2 ~~~~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 79 (355)
T cd03819 2 QVLPALESGGVERGTLELARALVERGHRSLVAS--AGGRLVAELEAEGSRHIKLPFISKNPLRILLNVARLRRLIREEKV 79 (355)
T ss_pred ccchhhccCcHHHHHHHHHHHHHHcCCEEEEEc--CCCchHHHHHhcCCeEEEccccccchhhhHHHHHHHHHHHHHcCC
Confidence 456789999999999999999999999998775 34556666777788765432110 0 1123589
Q ss_pred cEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcE
Q 006050 313 DLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPA 392 (663)
Q Consensus 313 DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~ 392 (663)
|+||+++... .|...+.... ...++++++|+...... ....++.+++.++++|+...+...+ ..++. ..++.
T Consensus 80 dii~~~~~~~-~~~~~~~~~~--~~~~~i~~~h~~~~~~~-~~~~~~~~~~~vi~~s~~~~~~~~~---~~~~~-~~k~~ 151 (355)
T cd03819 80 DIVHARSRAP-AWSAYLAARR--TRPPFVTTVHGFYSVNF-RYNAIMARGDRVIAVSNFIADHIRE---NYGVD-PDRIR 151 (355)
T ss_pred CEEEECCCch-hHHHHHHHHh--cCCCEEEEeCCchhhHH-HHHHHHHhcCEEEEeCHHHHHHHHH---hcCCC-hhhEE
Confidence 9999987533 2333222221 24567777776432211 2244567899999999987766331 23332 23678
Q ss_pred EeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhC
Q 006050 393 VVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQE 472 (663)
Q Consensus 393 VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~ 472 (663)
++|+|++.+.+... ..... ....+|++++++++.++++++|++.+.||++.+++|+..+.+..
T Consensus 152 ~i~ngi~~~~~~~~---------~~~~~--------~~~~~~~~~~~~~~~~~i~~~Gr~~~~Kg~~~li~~~~~l~~~~ 214 (355)
T cd03819 152 VIPRGVDLDRFDPG---------AVPPE--------RILALAREWPLPKGKPVILLPGRLTRWKGQEVFIEALARLKKDD 214 (355)
T ss_pred EecCCccccccCcc---------ccchH--------HHHHHHHHcCCCCCceEEEEeeccccccCHHHHHHHHHHHHhcC
Confidence 99999875432110 00000 11236888899999999999999999999999999999996653
Q ss_pred CCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccc
Q 006050 473 PSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVS 552 (663)
Q Consensus 473 P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~ 552 (663)
++.
T Consensus 215 ~~~----------------------------------------------------------------------------- 217 (355)
T cd03819 215 PDV----------------------------------------------------------------------------- 217 (355)
T ss_pred CCe-----------------------------------------------------------------------------
Confidence 331
Q ss_pred cCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcC-
Q 006050 553 FGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINS- 631 (663)
Q Consensus 553 ~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS- 631 (663)
-.+++|.... ...+ .+.+.+.+.++++.++|+|+|..+++..+|++||++++||
T Consensus 218 ---------------------~l~ivG~~~~---~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~~ad~~i~ps~ 272 (355)
T cd03819 218 ---------------------HLLIVGDAQG---RRFY-YAELLELIKRLGLQDRVTFVGHCSDMPAAYALADIVVSAST 272 (355)
T ss_pred ---------------------EEEEEECCcc---cchH-HHHHHHHHHHcCCcceEEEcCCcccHHHHHHhCCEEEecCC
Confidence 0266776322 2223 4446778888999999999999989999999999999999
Q ss_pred CCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 632 QGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 632 ~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
. .|+||++++||||||+|||+++.++..
T Consensus 273 ~--~e~~~~~l~EA~a~G~PvI~~~~~~~~ 300 (355)
T cd03819 273 E--PEAFGRTAVEAQAMGRPVIASDHGGAR 300 (355)
T ss_pred C--CCCCchHHHHHHhcCCCEEEcCCCCcH
Confidence 6 899999999999999999999988764
No 6
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.95 E-value=3.2e-26 Score=230.98 Aligned_cols=280 Identities=20% Similarity=0.271 Sum_probs=191.3
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEE--eCCC-----Cc--------h--
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--EDRG-----EP--------S-- 305 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl--~~~~-----~~--------s-- 305 (663)
+||++++|. ..||+++++.+||++|.+.||+|.+++...+..... ...++.+. +... .. .
T Consensus 1 mki~~~~~p-~~gG~~~~~~~la~~L~~~G~~v~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 77 (371)
T cd04962 1 MKIGIVCYP-TYGGSGVVATELGKALARRGHEVHFITSSRPFRLDE--YSPNIFFHEVEVPQYPLFQYPPYDLALASKIA 77 (371)
T ss_pred CceeEEEEe-CCCCccchHHHHHHHHHhcCCceEEEecCCCcchhh--hccCeEEEEecccccchhhcchhHHHHHHHHH
Confidence 588888764 479999999999999999999999887543221111 12233332 1110 00 0
Q ss_pred -hhhhcCccEEEECchhhHHHHHHHHH-h-CCCCCccEEEEEeehh-------hhhHHHHHHHHhcCCEEEEecHHHHHH
Q 006050 306 -FKTSMKADLVIAGSAVCATWIDQYIT-R-FPAGGSQVVWWIMENR-------REYFDRAKLVLDRVKLLVFLSESQTKQ 375 (663)
Q Consensus 306 -fk~~~k~DLVianSav~aswi~~yi~-~-~pa~~~~vvwwi~E~r-------~~yf~r~k~vl~rvk~lIflSes~~k~ 375 (663)
+....++|+||++......+. .++. . ......++++.+|... ..+....+..+.+++.++++|+...+.
T Consensus 78 ~~i~~~~~divh~~~~~~~~~~-~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 156 (371)
T cd04962 78 EVAKRYKLDLLHVHYAVPHAVA-AYLAREILGKKDLPVVTTLHGTDITLVGQDPSFQPATRFSIEKSDGVTAVSESLRQE 156 (371)
T ss_pred HHHhcCCccEEeecccCCccHH-HHHHHHhcCcCCCcEEEEEcCCccccccccccchHHHHHHHhhCCEEEEcCHHHHHH
Confidence 012358999999864321111 1111 1 1111345667777431 112222345577899999999987665
Q ss_pred HHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCC
Q 006050 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPG 455 (663)
Q Consensus 376 w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~ 455 (663)
..+.+ ....++.++|++++...+. +.. ....++++++++++++++++|++.+.
T Consensus 157 ~~~~~-----~~~~~i~vi~n~~~~~~~~--------------~~~--------~~~~~~~~~~~~~~~~il~~g~l~~~ 209 (371)
T cd04962 157 TYELF-----DITKEIEVIPNFVDEDRFR--------------PKP--------DEALKRRLGAPEGEKVLIHISNFRPV 209 (371)
T ss_pred HHHhc-----CCcCCEEEecCCcCHhhcC--------------CCc--------hHHHHHhcCCCCCCeEEEEecccccc
Confidence 43321 2234678999998754211 110 12356788999999999999999999
Q ss_pred CCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccc
Q 006050 456 KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (663)
Q Consensus 456 KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~ 535 (663)
||++.+++|+..+.++.+.
T Consensus 210 K~~~~li~a~~~l~~~~~~------------------------------------------------------------- 228 (371)
T cd04962 210 KRIDDVIRIFAKVRKEVPA------------------------------------------------------------- 228 (371)
T ss_pred cCHHHHHHHHHHHHhcCCc-------------------------------------------------------------
Confidence 9999999999988543211
Q ss_pred cCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc
Q 006050 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT 615 (663)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~ 615 (663)
-.+++|. |+ . .+.++.++++.++.++|.|+|..+
T Consensus 229 --------------------------------------~l~i~G~-g~---~----~~~~~~~~~~~~~~~~v~~~g~~~ 262 (371)
T cd04962 229 --------------------------------------RLLLVGD-GP---E----RSPAERLARELGLQDDVLFLGKQD 262 (371)
T ss_pred --------------------------------------eEEEEcC-Cc---C----HHHHHHHHHHcCCCceEEEecCcc
Confidence 0256665 32 1 233677888899999999999999
Q ss_pred hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 616 dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
++..+|++||++|+||. .|+||++++||||||+|||+|+.+++.+
T Consensus 263 ~~~~~~~~~d~~v~ps~--~E~~~~~~~EAma~g~PvI~s~~~~~~e 307 (371)
T cd04962 263 HVEELLSIADLFLLPSE--KESFGLAALEAMACGVPVVASNAGGIPE 307 (371)
T ss_pred cHHHHHHhcCEEEeCCC--cCCCccHHHHHHHcCCCEEEeCCCCchh
Confidence 99999999999999998 9999999999999999999999988754
No 7
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=99.95 E-value=5e-26 Score=221.18 Aligned_cols=284 Identities=23% Similarity=0.312 Sum_probs=201.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCc---h---------hhhhcC
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP---S---------FKTSMK 311 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~---s---------fk~~~k 311 (663)
||++|++.++.||+++.+.+|+++|.+.|++|.++++...+.+.+.+...+|++....... . +....+
T Consensus 1 ~i~~i~~~~~~gG~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03807 1 KVLHVITGLDVGGAERMLVRLLKGLDRDRFEHVVISLTDRGELGEELEEAGVPVYCLGKRPGRPDPGALLRLYKLIRRLR 80 (365)
T ss_pred CeEEEEeeccCccHHHHHHHHHHHhhhccceEEEEecCcchhhhHHHHhcCCeEEEEecccccccHHHHHHHHHHHHhhC
Confidence 6999999999999999999999999999999999987766666667777788875432211 1 112458
Q ss_pred ccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhh---hHH-----HHHHHHhcCCEEEEecHHHHHHHHHHhHhh
Q 006050 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---YFD-----RAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (663)
Q Consensus 312 ~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~---yf~-----r~k~vl~rvk~lIflSes~~k~w~~~~~~~ 383 (663)
+|+||++..... +........ ....+++|.+|..... ++. ....+....+.++++|....+.+.. .
T Consensus 81 ~div~~~~~~~~-~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~----~ 154 (365)
T cd03807 81 PDVVHTWMYHAD-LYGGLAARL-AGVPPVIWGIRHSDLDLGKKSTRLVARLRRLLSSFIPLIVANSAAAAEYHQA----I 154 (365)
T ss_pred CCEEEecccccc-HHHHHHHHh-cCCCcEEEEecCCcccccchhHhHHHHHHHHhccccCeEEeccHHHHHHHHH----c
Confidence 999998753221 111222221 1355677777654322 111 1223345677778888877666432 2
Q ss_pred cccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 006050 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (663)
Q Consensus 384 ~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLe 463 (663)
++.. .+..++|+|++...+. +... .....+++++++++..+++++|++.+.||++.+++
T Consensus 155 ~~~~-~~~~vi~~~~~~~~~~--------------~~~~------~~~~~~~~~~~~~~~~~i~~~G~~~~~K~~~~li~ 213 (365)
T cd03807 155 GYPP-KKIVVIPNGVDTERFS--------------PDLD------ARARLREELGLPEDTFLIGIVARLHPQKDHATLLR 213 (365)
T ss_pred CCCh-hheeEeCCCcCHHhcC--------------Cccc------chHHHHHhcCCCCCCeEEEEecccchhcCHHHHHH
Confidence 3332 3678899998754221 1000 12345678999999999999999999999999999
Q ss_pred HHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCccc
Q 006050 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (663)
Q Consensus 464 A~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~ 543 (663)
|+..+.++.|+.
T Consensus 214 a~~~l~~~~~~~-------------------------------------------------------------------- 225 (365)
T cd03807 214 AAALLLKKFPNA-------------------------------------------------------------------- 225 (365)
T ss_pred HHHHHHHhCCCe--------------------------------------------------------------------
Confidence 999997664442
Q ss_pred ccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHH-hCCCCCcEEEcCCcchHHHHHH
Q 006050 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQ-HSNLSKAMLWTPATTRVASLYS 622 (663)
Q Consensus 544 ~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~-~~gLs~~V~~~G~~~dv~~lys 622 (663)
+ .+++|.... .++ ++.+.. ..++.++|.|+|..+++..+|+
T Consensus 226 -----------------~-------------l~i~G~~~~----~~~----~~~~~~~~~~~~~~v~~~g~~~~~~~~~~ 267 (365)
T cd03807 226 -----------------R-------------LLLVGDGPD----RAN----LELLALKELGLEDKVILLGERSDVPALLN 267 (365)
T ss_pred -----------------E-------------EEEecCCcc----hhH----HHHHHHHhcCCCceEEEccccccHHHHHH
Confidence 0 255665221 122 333444 7889999999999999999999
Q ss_pred HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 623 AADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 623 aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.||++++||. .|+||++++||||||+|||+++.++..+
T Consensus 268 ~adi~v~ps~--~e~~~~~~~Ea~a~g~PvI~~~~~~~~e 305 (365)
T cd03807 268 ALDVFVLSSL--SEGFPNVLLEAMACGLPVVATDVGDNAE 305 (365)
T ss_pred hCCEEEeCCc--cccCCcHHHHHHhcCCCEEEcCCCChHH
Confidence 9999999999 8999999999999999999999987653
No 8
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=99.95 E-value=2e-25 Score=222.14 Aligned_cols=284 Identities=19% Similarity=0.230 Sum_probs=190.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeE-EEeC-CCCch----------hhhhcC
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIK-VLED-RGEPS----------FKTSMK 311 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIk-Vl~~-~~~~s----------fk~~~k 311 (663)
|||++++.++.||++..+.+|+++|.+.||+|.+++..... .........+. .+.. +.... +....+
T Consensus 1 ~il~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (360)
T cd04951 1 KILYVITGLGLGGAEKQVVDLADQFVAKGHQVAIISLTGES-EVKPPIDATIILNLNMSKNPLSFLLALWKLRKILRQFK 79 (360)
T ss_pred CeEEEecCCCCCCHHHHHHHHHHhcccCCceEEEEEEeCCC-CccchhhccceEEecccccchhhHHHHHHHHHHHHhcC
Confidence 58999999999999999999999999999999998865432 22111111111 1111 11100 112358
Q ss_pred ccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhh--hHHH-HHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCC
Q 006050 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE--YFDR-AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLR 388 (663)
Q Consensus 312 ~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~--yf~r-~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~ 388 (663)
+|+||+++..+. ++..++... ....+++.+.|..... +... .+.....++.++.+|....++. .+.+....
T Consensus 80 pdiv~~~~~~~~-~~~~l~~~~-~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~----~~~~~~~~ 153 (360)
T cd04951 80 PDVVHAHMFHAN-IFARLLRLF-LPSPPLICTAHSKNEGGRLRMLAYRLTDFLSDLTTNVSKEALDYF----IASKAFNA 153 (360)
T ss_pred CCEEEEcccchH-HHHHHHHhh-CCCCcEEEEeeccCchhHHHHHHHHHHhhccCceEEEcHHHHHHH----HhccCCCc
Confidence 999999864332 222222222 2233455555543211 1011 1112233555667777655543 22232223
Q ss_pred CCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHh
Q 006050 389 SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLM 468 (663)
Q Consensus 389 s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l 468 (663)
+++.++|+|++.+.+ .+... ....+++++++++++++++++|++.+.||++.+++|+..+
T Consensus 154 ~~~~~i~ng~~~~~~--------------~~~~~------~~~~~~~~~~~~~~~~~~l~~g~~~~~kg~~~li~a~~~l 213 (360)
T cd04951 154 NKSFVVYNGIDTDRF--------------RKDPA------RRLKIRNALGVKNDTFVILAVGRLVEAKDYPNLLKAFAKL 213 (360)
T ss_pred ccEEEEccccchhhc--------------CcchH------HHHHHHHHcCcCCCCEEEEEEeeCchhcCcHHHHHHHHHH
Confidence 468899999865422 11111 1235788999999999999999999999999999999999
Q ss_pred HHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCc
Q 006050 469 IEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNT 548 (663)
Q Consensus 469 ~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~ 548 (663)
.++.|+.
T Consensus 214 ~~~~~~~------------------------------------------------------------------------- 220 (360)
T cd04951 214 LSDYLDI------------------------------------------------------------------------- 220 (360)
T ss_pred HhhCCCe-------------------------------------------------------------------------
Confidence 7665542
Q ss_pred cccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEE
Q 006050 549 DAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYV 628 (663)
Q Consensus 549 ~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V 628 (663)
+ ++++|. |+ + ++.++++++.+++.++|.|+|+.+++..+|++||+++
T Consensus 221 ------------~-------------l~i~G~-g~------~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v 267 (360)
T cd04951 221 ------------K-------------LLIAGD-GP------L-RATLERLIKALGLSNRVKLLGLRDDIAAYYNAADLFV 267 (360)
T ss_pred ------------E-------------EEEEcC-CC------c-HHHHHHHHHhcCCCCcEEEecccccHHHHHHhhceEE
Confidence 0 256675 33 1 2336677788899999999999999999999999999
Q ss_pred EcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 629 INSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 629 ~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+||. .|+||++++||||+|+|||+++.+++.+
T Consensus 268 ~~s~--~e~~~~~~~Ea~a~G~PvI~~~~~~~~e 299 (360)
T cd04951 268 LSSA--WEGFGLVVAEAMACELPVVATDAGGVRE 299 (360)
T ss_pred eccc--ccCCChHHHHHHHcCCCEEEecCCChhh
Confidence 9999 8999999999999999999999988764
No 9
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.95 E-value=4.1e-26 Score=259.58 Aligned_cols=285 Identities=18% Similarity=0.160 Sum_probs=188.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCC------------eEEEEE--EcC-C--CCChhHHhcCCeEEEeCCCCc--
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGA------------TVSAVV--LSK-R--GGLMPELARRKIKVLEDRGEP-- 304 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~------------~V~vVv--Ls~-~--GgL~~eL~~~gIkVl~~~~~~-- 304 (663)
||++|++++..||||+++++||.+|.+.++ .|.+++ +.. . +.+..+|.+.||+|.......
T Consensus 283 rIl~vi~sl~~GGAEr~~~~La~~l~~~~~~~~~~~g~g~~~~~~V~~~~~~~~~g~~~~~~~L~~~Gv~v~~l~~~~~~ 362 (694)
T PRK15179 283 PVLMINGSLGAGGAERQFVNTAVALQSAIQQGQSIAGYGVLGPVQVVCRSLRSREGADFFAATLADAGIPVSVYSDMQAW 362 (694)
T ss_pred eEEEEeCCCCCCcHHHHHHHHHHHHHhcccCcccccCccCCCCcEEEEEecccccCcchHHHHHHhCCCeEEEeccCCcc
Confidence 899999999999999999999999999865 344444 322 2 347778888998886432110
Q ss_pred ----------------------h---------hhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEE-EEeeh----h
Q 006050 305 ----------------------S---------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVW-WIMEN----R 348 (663)
Q Consensus 305 ----------------------s---------fk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvw-wi~E~----r 348 (663)
. +-...++|+||+++.... ++....... .+. ++++ ..|.. .
T Consensus 363 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~L~~~lk~~kpDIVH~h~~~a~-~lg~lAa~~-~gv-PvIv~t~h~~~~~~~ 439 (694)
T PRK15179 363 GGCEFSSLLAPYREYLRFLPKQIIEGTTKLTDVMRSSVPSVVHIWQDGSI-FACALAALL-AGV-PRIVLSVRTMPPVDR 439 (694)
T ss_pred CcccccccchhhHHHhhhcchhHHHHHHHHHHHHHHcCCcEEEEeCCcHH-HHHHHHHHH-cCC-CEEEEEeCCCccccc
Confidence 0 112357999999864332 222222221 122 3333 22321 0
Q ss_pred hhhH----HHHHHHHhcCCEEEEecHH--HHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhH
Q 006050 349 REYF----DRAKLVLDRVKLLVFLSES--QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM 422 (663)
Q Consensus 349 ~~yf----~r~k~vl~rvk~lIflSes--~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~ 422 (663)
..++ ......+..++.+++++.+ ..+... ...+++ ..++.||||||+.+.+. | .+...
T Consensus 440 ~~~~~~~~~~l~~~l~~~~~~i~Vs~S~~~~~~l~---~~~g~~-~~kI~VI~NGVd~~~f~----------~--~~~~~ 503 (694)
T PRK15179 440 PDRYRVEYDIIYSELLKMRGVALSSNSQFAAHRYA---DWLGVD-ERRIPVVYNGLAPLKSV----------Q--DDACT 503 (694)
T ss_pred hhHHHHHHHHHHHHHHhcCCeEEEeCcHHHHHHHH---HHcCCC-hhHEEEECCCcCHHhcC----------C--Cchhh
Confidence 1111 0111122344555555543 333321 223443 24688999999764321 0 01100
Q ss_pred HHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccc
Q 006050 423 REKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGR 502 (663)
Q Consensus 423 ~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~ 502 (663)
.. +... ...++++.++|+++||+++.||++.||+|+..+.++.|+.
T Consensus 504 -~~----~~~~--~~~~~~~~~vIg~VGRL~~~KG~~~LI~A~a~l~~~~p~~--------------------------- 549 (694)
T PRK15179 504 -AM----MAQF--DARTSDARFTVGTVMRVDDNKRPFLWVEAAQRFAASHPKV--------------------------- 549 (694)
T ss_pred -HH----HHhh--ccccCCCCeEEEEEEeCCccCCHHHHHHHHHHHHHHCcCe---------------------------
Confidence 00 0111 2234566789999999999999999999999997766652
Q ss_pred ccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecC
Q 006050 503 GLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVG 582 (663)
Q Consensus 503 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g 582 (663)
-++++|+ |
T Consensus 550 -----------------------------------------------------------------------~LvIvG~-G 557 (694)
T PRK15179 550 -----------------------------------------------------------------------RFIMVGG-G 557 (694)
T ss_pred -----------------------------------------------------------------------EEEEEcc-C
Confidence 0267776 3
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 583 SKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 583 ~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+ + ++.++.+++++|+.++|+|+|+.+++..+|++||+||+||. .|+||++++||||||+|||+|+++++.+
T Consensus 558 ~------~-~~~L~~l~~~lgL~~~V~flG~~~dv~~ll~aaDv~VlpS~--~Egfp~vlLEAMA~G~PVVat~~gG~~E 628 (694)
T PRK15179 558 P------L-LESVREFAQRLGMGERILFTGLSRRVGYWLTQFNAFLLLSR--FEGLPNVLIEAQFSGVPVVTTLAGGAGE 628 (694)
T ss_pred c------c-hHHHHHHHHHcCCCCcEEEcCCcchHHHHHHhcCEEEeccc--cccchHHHHHHHHcCCeEEEECCCChHH
Confidence 3 2 34488899999999999999999999999999999999999 9999999999999999999999998754
No 10
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=99.95 E-value=1.7e-25 Score=233.89 Aligned_cols=277 Identities=16% Similarity=0.177 Sum_probs=189.0
Q ss_pred eEEEEeCCCC--CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCC--------c---------
Q 006050 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE--------P--------- 304 (663)
Q Consensus 244 KILLI~heLs--~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~--------~--------- 304 (663)
||++|.+... .||+++.+.+||++|.++||+|.+++...++....+....++++...+.. .
T Consensus 1 kI~~v~~~~~p~~GG~e~~~~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~i~v~~~p~~~~~~~~~~~~~~~~~~~l 80 (398)
T cd03796 1 RICMVSDFFYPNLGGVETHIYQLSQCLIKRGHKVVVITHAYGNRVGIRYLTNGLKVYYLPFVVFYNQSTLPTFFGTFPLL 80 (398)
T ss_pred CeeEEeeccccccccHHHHHHHHHHHHHHcCCeeEEEeccCCcCCCcccccCceeEEEecceeccCCccccchhhhHHHH
Confidence 6777776443 68999999999999999999999988543332223334567766532210 0
Q ss_pred -hhhhhcCccEEEECchhhHH-HHHHHHHhCCCCCccEEEEEeehhh------hhHH-HHHHHHhcCCEEEEecHHHHHH
Q 006050 305 -SFKTSMKADLVIAGSAVCAT-WIDQYITRFPAGGSQVVWWIMENRR------EYFD-RAKLVLDRVKLLVFLSESQTKQ 375 (663)
Q Consensus 305 -sfk~~~k~DLVianSav~as-wi~~yi~~~pa~~~~vvwwi~E~r~------~yf~-r~k~vl~rvk~lIflSes~~k~ 375 (663)
.+....++|+||+++..... +....+.. ....+++|..|.... .+.. ..+..+.+++.++++|+...+.
T Consensus 81 ~~~~~~~~~DiIh~~~~~~~~~~~~~~~~~--~~~~~~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~ 158 (398)
T cd03796 81 RNILIRERITIVHGHQAFSALAHEALLHAR--TMGLKTVFTDHSLFGFADASSIHTNKLLRFSLADVDHVICVSHTSKEN 158 (398)
T ss_pred HHHHHhcCCCEEEECCCCchHHHHHHHHhh--hcCCcEEEEecccccccchhhHHhhHHHHHhhccCCEEEEecHhHhhH
Confidence 01124589999999743221 11111111 112346665554210 0111 1233457789999999976654
Q ss_pred HHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCC
Q 006050 376 WLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPG 455 (663)
Q Consensus 376 w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~ 455 (663)
.. ...++. ..++.+||+|++.+.+. +... ..+++.++++++|++.+.
T Consensus 159 ~~---~~~~~~-~~k~~vi~ngvd~~~f~--------------~~~~---------------~~~~~~~~i~~~grl~~~ 205 (398)
T cd03796 159 TV---LRASLD-PERVSVIPNAVDSSDFT--------------PDPS---------------KRDNDKITIVVISRLVYR 205 (398)
T ss_pred HH---HHhCCC-hhhEEEEcCccCHHHcC--------------CCcc---------------cCCCCceEEEEEeccchh
Confidence 32 223333 34678999999764321 1000 023567899999999999
Q ss_pred CCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccc
Q 006050 456 KGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (663)
Q Consensus 456 KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~ 535 (663)
||++.|++|++.+.++.|+.
T Consensus 206 Kg~~~li~a~~~l~~~~~~~------------------------------------------------------------ 225 (398)
T cd03796 206 KGIDLLVGIIPEICKKHPNV------------------------------------------------------------ 225 (398)
T ss_pred cCHHHHHHHHHHHHhhCCCE------------------------------------------------------------
Confidence 99999999999987665542
Q ss_pred cCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc
Q 006050 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT 615 (663)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~ 615 (663)
-++++|. |+ + ++.++++++.++++++|.|+|..+
T Consensus 226 --------------------------------------~l~i~G~-g~------~-~~~l~~~~~~~~l~~~v~~~G~~~ 259 (398)
T cd03796 226 --------------------------------------RFIIGGD-GP------K-RILLEEMREKYNLQDRVELLGAVP 259 (398)
T ss_pred --------------------------------------EEEEEeC-Cc------h-HHHHHHHHHHhCCCCeEEEeCCCC
Confidence 0256675 32 1 344788899999999999999864
Q ss_pred --hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccCC
Q 006050 616 --RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSIM 663 (663)
Q Consensus 616 --dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~~ 663 (663)
++..+|++||++|+||. .|+||++++||||||+|||+|+++++.++
T Consensus 260 ~~~~~~~l~~ad~~v~pS~--~E~~g~~~~EAma~G~PVI~s~~gg~~e~ 307 (398)
T cd03796 260 HERVRDVLVQGHIFLNTSL--TEAFCIAIVEAASCGLLVVSTRVGGIPEV 307 (398)
T ss_pred HHHHHHHHHhCCEEEeCCh--hhccCHHHHHHHHcCCCEEECCCCCchhh
Confidence 89999999999999998 99999999999999999999999998653
No 11
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=99.95 E-value=7.5e-26 Score=233.38 Aligned_cols=285 Identities=14% Similarity=0.189 Sum_probs=189.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChh---HHh--cCCeEE-EeCCCCchh-----------
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELA--RRKIKV-LEDRGEPSF----------- 306 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~---eL~--~~gIkV-l~~~~~~sf----------- 306 (663)
||+++++.+..||++..+++++.+|.+.||+|++++.....+... +.. -.|.++ ++......+
T Consensus 1 ki~~~~~~~~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (372)
T cd03792 1 KVLHVNSTPYGGGVAEILHSLVPLMRDLGVDTRWEVIKGDPEFFNVTKKFHNALQGADIELSEEEKEIYLEWNEENAERP 80 (372)
T ss_pred CeEEEeCCCCCCcHHHHHHHHHHHHHHcCCCceEEecCCChhHHHHHHHhhHhhcCCCCCCCHHHHHHHHHHHHHHhccc
Confidence 689999999999999999999999999999999988654433211 111 113332 111000000
Q ss_pred hhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh----hhHHHHHHHHhcCCEEEEecHHHHHHHHHHhHh
Q 006050 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR----EYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEE 382 (663)
Q Consensus 307 k~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~----~yf~r~k~vl~rvk~lIflSes~~k~w~~~~~~ 382 (663)
....++|+||+|+..... +... .. ....+++++.|.... ..+...+..+.+++.+++.+.. . ..
T Consensus 81 ~~~~~~Dvv~~h~~~~~~-~~~~-~~--~~~~~~i~~~H~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~---~-----~~ 148 (372)
T cd03792 81 LLDLDADVVVIHDPQPLA-LPLF-KK--KRGRPWIWRCHIDLSSPNRRVWDFLQPYIEDYDAAVFHLPE---Y-----VP 148 (372)
T ss_pred cccCCCCEEEECCCCchh-HHHh-hh--cCCCeEEEEeeeecCCCcHHHHHHHHHHHHhCCEEeecHHH---h-----cC
Confidence 013479999999764321 1111 11 213446677775431 1122234456778888876621 1 11
Q ss_pred hcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHH
Q 006050 383 EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLV 462 (663)
Q Consensus 383 ~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLL 462 (663)
.++. .+..++|+|++....+. ..+++++ +..+|+++|++++.++|+++||+.+.||++.|+
T Consensus 149 ~~~~--~~~~vipngvd~~~~~~---------~~~~~~~--------~~~~~~~~~~~~~~~~i~~vgrl~~~Kg~~~ll 209 (372)
T cd03792 149 PQVP--PRKVIIPPSIDPLSGKN---------RELSPAD--------IEYILEKYGIDPERPYITQVSRFDPWKDPFGVI 209 (372)
T ss_pred CCCC--CceEEeCCCCCCCcccc---------CCCCHHH--------HHHHHHHhCCCCCCcEEEEEeccccccCcHHHH
Confidence 2222 23449999997531110 1223321 235678899999999999999999999999999
Q ss_pred HHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcc
Q 006050 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (663)
Q Consensus 463 eA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f 542 (663)
+|+..+.++.|+.
T Consensus 210 ~a~~~l~~~~~~~------------------------------------------------------------------- 222 (372)
T cd03792 210 DAYRKVKERVPDP------------------------------------------------------------------- 222 (372)
T ss_pred HHHHHHHhhCCCC-------------------------------------------------------------------
Confidence 9999987654442
Q ss_pred cccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCc----chHH
Q 006050 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT----TRVA 618 (663)
Q Consensus 543 ~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~----~dv~ 618 (663)
-++++|.... . + +..++.++.+.+..++.++|.|+|.. .++.
T Consensus 223 -------------------------------~l~i~G~g~~-~-~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 268 (372)
T cd03792 223 -------------------------------QLVLVGSGAT-D-D-PEGWIVYEEVLEYAEGDPDIHVLTLPPVSDLEVN 268 (372)
T ss_pred -------------------------------EEEEEeCCCC-C-C-chhHHHHHHHHHHhCCCCCeEEEecCCCCHHHHH
Confidence 0267776322 1 1 11233456666667888899999876 4899
Q ss_pred HHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 619 ~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.+|++||+||+||. .|+||++++||||||+|||+|+.+++.+
T Consensus 269 ~~~~~ad~~v~~s~--~Eg~g~~~lEA~a~G~Pvv~s~~~~~~~ 310 (372)
T cd03792 269 ALQRASTVVLQKSI--REGFGLTVTEALWKGKPVIAGPVGGIPL 310 (372)
T ss_pred HHHHhCeEEEeCCC--ccCCCHHHHHHHHcCCCEEEcCCCCchh
Confidence 99999999999999 9999999999999999999999988653
No 12
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=99.94 E-value=1.3e-24 Score=208.92 Aligned_cols=280 Identities=21% Similarity=0.292 Sum_probs=193.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcC----CeEEEeCCCC--c-------hhhhhc
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR----KIKVLEDRGE--P-------SFKTSM 310 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~----gIkVl~~~~~--~-------sfk~~~ 310 (663)
||+++++....||+++.+.+++++|.+.||+|.+++.............. .......... . .+....
T Consensus 1 kIl~~~~~~~~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (353)
T cd03811 1 KILFVIPSLGGGGAERVLLNLANGLDKRGYDVTLVVLRDEGDYLELLPSNVKLIPVRVLKLKSLRDLLAILRLRRLLRKE 80 (353)
T ss_pred CeEEEeecccCCCcchhHHHHHHHHHhcCceEEEEEcCCCCccccccccchhhhceeeeecccccchhHHHHHHHHHHhc
Confidence 68999999999999999999999999999999998866543321111100 1111111110 0 011235
Q ss_pred CccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHH-------HHHHHHhcCCEEEEecHHHHHHHHHHhHhh
Q 006050 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD-------RAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (663)
Q Consensus 311 k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~-------r~k~vl~rvk~lIflSes~~k~w~~~~~~~ 383 (663)
++|+||.+.. ...++...+.... ..++++|+|......+. .....+..++.++++|+...+......
T Consensus 81 ~~dii~~~~~-~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~~~~--- 154 (353)
T cd03811 81 KPDVVISHLT-TTPNVLALLAARL--GTKLIVWEHNSLSLELKRKLRLLLLIRKLYRRADKIVAVSEGVKEDLLKLL--- 154 (353)
T ss_pred CCCEEEEcCc-cchhHHHHHHhhc--CCceEEEEcCcchhhhccchhHHHHHHhhccccceEEEeccchhhhHHHhh---
Confidence 7999999875 2223333333222 45678888875432221 124456788999999998877654332
Q ss_pred cccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 006050 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (663)
Q Consensus 384 ~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLe 463 (663)
+. ...+..++|++++.+... +... . ...++..++..+++++|++.+.||++.+++
T Consensus 155 ~~-~~~~~~vi~~~~~~~~~~--------------~~~~--~--------~~~~~~~~~~~~i~~~g~~~~~k~~~~~i~ 209 (353)
T cd03811 155 GI-PPDKIEVIYNPIDIEEIR--------------ALAE--E--------PLELGIPPDGPVILAVGRLSPQKGFDTLIR 209 (353)
T ss_pred cC-CccccEEecCCcChhhcC--------------cccc--h--------hhhcCCCCCceEEEEEecchhhcChHHHHH
Confidence 11 134688999998754221 0000 0 003566778899999999999999999999
Q ss_pred HHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCccc
Q 006050 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (663)
Q Consensus 464 A~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~ 543 (663)
|+..+.++.++.
T Consensus 210 ~~~~l~~~~~~~-------------------------------------------------------------------- 221 (353)
T cd03811 210 AFALLRKEGPDA-------------------------------------------------------------------- 221 (353)
T ss_pred HHHHhhhcCCCc--------------------------------------------------------------------
Confidence 999996654331
Q ss_pred ccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHH
Q 006050 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSA 623 (663)
Q Consensus 544 ~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysa 623 (663)
-.+++|. ++ . .+.+..+++.+++.++|.|+|..+++.++|+.
T Consensus 222 ------------------------------~l~i~G~-~~---~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~ 263 (353)
T cd03811 222 ------------------------------RLVILGD-GP---L----REELEALAKELGLADRVHFLGFQSNPYPYLKA 263 (353)
T ss_pred ------------------------------eEEEEcC-Cc---c----HHHHHHHHHhcCCCccEEEecccCCHHHHHHh
Confidence 0255664 22 1 22356788889999999999999999999999
Q ss_pred ccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 624 ADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 624 ADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
||++++||. .|+||++++||||||+|||+++.+++.+
T Consensus 264 ~d~~i~ps~--~e~~~~~~~Ea~~~G~PvI~~~~~~~~e 300 (353)
T cd03811 264 ADLFVLSSR--YEGFPNVLLEAMALGTPVVATDCPGPRE 300 (353)
T ss_pred CCEEEeCcc--cCCCCcHHHHHHHhCCCEEEcCCCChHH
Confidence 999999999 8999999999999999999999998653
No 13
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=99.94 E-value=1.7e-24 Score=224.46 Aligned_cols=279 Identities=19% Similarity=0.234 Sum_probs=188.7
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhH-HhcCCeEEEeCCC-----Cc---------h-----hh---h--
Q 006050 254 MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-LARRKIKVLEDRG-----EP---------S-----FK---T-- 308 (663)
Q Consensus 254 ~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~e-L~~~gIkVl~~~~-----~~---------s-----fk---~-- 308 (663)
.||++.++.+||++|.++||+|++++........+. -...|+++..... .. . ++ .
T Consensus 19 ~GG~e~~v~~la~~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (405)
T TIGR03449 19 AGGMNVYILETATELARRGIEVDIFTRATRPSQPPVVEVAPGVRVRNVVAGPYEGLDKEDLPTQLCAFTGGVLRAEARHE 98 (405)
T ss_pred CCCceehHHHHHHHHhhCCCEEEEEecccCCCCCCccccCCCcEEEEecCCCcccCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 599999999999999999999999885432211111 1135777764311 00 0 00 1
Q ss_pred hcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh---hh-----------HH-HHHHHHhcCCEEEEecHHHH
Q 006050 309 SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR---EY-----------FD-RAKLVLDRVKLLVFLSESQT 373 (663)
Q Consensus 309 ~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~---~y-----------f~-r~k~vl~rvk~lIflSes~~ 373 (663)
..++|+||+|.... .++..++... ...++++.+|.... .+ .. ..+.++..++.++++|+...
T Consensus 99 ~~~~Diih~h~~~~-~~~~~~~~~~--~~~p~v~t~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~d~vi~~s~~~~ 175 (405)
T TIGR03449 99 PGYYDLIHSHYWLS-GQVGWLLRDR--WGVPLVHTAHTLAAVKNAALADGDTPEPEARRIGEQQLVDNADRLIANTDEEA 175 (405)
T ss_pred CCCCCeEEechHHH-HHHHHHHHHh--cCCCEEEeccchHHHHHHhccCCCCCchHHHHHHHHHHHHhcCeEEECCHHHH
Confidence 13699999997432 3333333221 12335555553210 00 01 11335678899999999776
Q ss_pred HHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCC
Q 006050 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (663)
Q Consensus 374 k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~ 453 (663)
+.+... .+.. ..++.+||+|++.+.+. +. .+...++++++++++++|+++|++.
T Consensus 176 ~~~~~~---~~~~-~~ki~vi~ngvd~~~~~--------------~~--------~~~~~~~~~~~~~~~~~i~~~G~l~ 229 (405)
T TIGR03449 176 RDLVRH---YDAD-PDRIDVVAPGADLERFR--------------PG--------DRATERARLGLPLDTKVVAFVGRIQ 229 (405)
T ss_pred HHHHHH---cCCC-hhhEEEECCCcCHHHcC--------------CC--------cHHHHHHhcCCCCCCcEEEEecCCC
Confidence 664321 2332 24678999999764321 10 0123577889988899999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccc
Q 006050 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (663)
Q Consensus 454 p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 533 (663)
+.||++.|++|++.+.++.|+. ++
T Consensus 230 ~~K~~~~li~a~~~l~~~~~~~---~~----------------------------------------------------- 253 (405)
T TIGR03449 230 PLKAPDVLLRAVAELLDRDPDR---NL----------------------------------------------------- 253 (405)
T ss_pred cccCHHHHHHHHHHHHhhCCCc---ce-----------------------------------------------------
Confidence 9999999999999997766541 00
Q ss_pred cccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCC
Q 006050 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (663)
Q Consensus 534 k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~ 613 (663)
-++++|.... ++.++ .+.++.+++.+++.++|.|+|.
T Consensus 254 ----------------------------------------~l~ivG~~~~--~g~~~-~~~l~~~~~~~~l~~~v~~~g~ 290 (405)
T TIGR03449 254 ----------------------------------------RVIVVGGPSG--SGLAT-PDALIELAAELGIADRVRFLPP 290 (405)
T ss_pred ----------------------------------------EEEEEeCCCC--CcchH-HHHHHHHHHHcCCCceEEECCC
Confidence 0256674211 12133 3347888999999999999998
Q ss_pred cc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 614 TT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 614 ~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.+ ++..+|++||++|+||. .|+||++++||||||+|||+++.+++.+
T Consensus 291 ~~~~~~~~~l~~ad~~v~ps~--~E~~g~~~lEAma~G~Pvi~~~~~~~~e 339 (405)
T TIGR03449 291 RPPEELVHVYRAADVVAVPSY--NESFGLVAMEAQACGTPVVAARVGGLPV 339 (405)
T ss_pred CCHHHHHHHHHhCCEEEECCC--CCCcChHHHHHHHcCCCEEEecCCCcHh
Confidence 75 89999999999999999 9999999999999999999999988754
No 14
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=99.94 E-value=1.6e-24 Score=211.41 Aligned_cols=282 Identities=20% Similarity=0.221 Sum_probs=185.8
Q ss_pred eEEEEeCCC--CCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeE-----EE--eCC------CCch---
Q 006050 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIK-----VL--EDR------GEPS--- 305 (663)
Q Consensus 244 KILLI~heL--s~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIk-----Vl--~~~------~~~s--- 305 (663)
||++|++.+ ..||++.++.+||++|.+.||+|++++....... .......+. .. ... ....
T Consensus 1 kIl~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (375)
T cd03821 1 KILHVIPSFDPKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGDP-LLVALNGVPVKLFSINVAYGLNLARYLFPPSLLA 79 (375)
T ss_pred CeEEEcCCCCcccCCeehHHHHHHHHHHhcCCcEEEEecCCCCcc-chhhccCceeeecccchhhhhhhhhhccChhHHH
Confidence 689999999 6899999999999999999999999886543322 211111100 00 000 0000
Q ss_pred --hhhhcCccEEEECchhhH-HHHHHHHHhCCCCCccEEEEEeehhhhh-------------HHHHHHHHhcCCEEEEec
Q 006050 306 --FKTSMKADLVIAGSAVCA-TWIDQYITRFPAGGSQVVWWIMENRREY-------------FDRAKLVLDRVKLLVFLS 369 (663)
Q Consensus 306 --fk~~~k~DLVianSav~a-swi~~yi~~~pa~~~~vvwwi~E~r~~y-------------f~r~k~vl~rvk~lIflS 369 (663)
.....++|+|++++.... .+........ ...++++++|.....+ +.....++...+.+++.|
T Consensus 80 ~~~~~~~~~dii~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s 157 (375)
T cd03821 80 WLRLNIREADIVHVHGLWSYPSLAAARAARK--YGIPYVVSPHGMLDPWALPHKALKKRLAWFLFERRLLQAAAAVHATS 157 (375)
T ss_pred HHHHhCCCCCEEEEecccchHHHHHHHHHHH--hCCCEEEEccccccccccccchhhhHHHHHHHHHHHHhcCCEEEECC
Confidence 112357999998863211 1111111111 1334566665431111 111233445667777777
Q ss_pred HHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEE
Q 006050 370 ESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSL 449 (663)
Q Consensus 370 es~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~V 449 (663)
......... . ....+..++|+|++.+.+ .+... ... |+.++.+++.++++++
T Consensus 158 ~~~~~~~~~-----~-~~~~~~~vi~~~~~~~~~--------------~~~~~-------~~~-~~~~~~~~~~~~i~~~ 209 (375)
T cd03821 158 EQEAAEIRR-----L-GLKAPIAVIPNGVDIPPF--------------AALPS-------RGR-RRKFPILPDKRIILFL 209 (375)
T ss_pred HHHHHHHHh-----h-CCcccEEEcCCCcChhcc--------------Ccchh-------hhh-hhhccCCCCCcEEEEE
Confidence 544333221 1 123467899999875422 11110 011 6778888899999999
Q ss_pred ecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccC
Q 006050 450 SSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLN 529 (663)
Q Consensus 450 Gri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 529 (663)
|++.+.||++.+++|+..+..+.|+.
T Consensus 210 G~~~~~K~~~~li~a~~~l~~~~~~~------------------------------------------------------ 235 (375)
T cd03821 210 GRLHPKKGLDLLIEAFAKLAERFPDW------------------------------------------------------ 235 (375)
T ss_pred eCcchhcCHHHHHHHHHHhhhhcCCe------------------------------------------------------
Confidence 99999999999999999997665542
Q ss_pred cccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEE
Q 006050 530 EPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML 609 (663)
Q Consensus 530 ~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~ 609 (663)
-.+++|.... .+ ...++.+++++++.++|.
T Consensus 236 --------------------------------------------~l~i~G~~~~-----~~-~~~~~~~~~~~~~~~~v~ 265 (375)
T cd03821 236 --------------------------------------------HLVIAGPDEG-----GY-RAELKQIAAALGLEDRVT 265 (375)
T ss_pred --------------------------------------------EEEEECCCCc-----ch-HHHHHHHHHhcCccceEE
Confidence 0256675322 22 344666778899999999
Q ss_pred EcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 610 WTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 610 ~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
|+|..+ ++..+|++||++|+||. .|+||++++||||||+|||+++.+++.+
T Consensus 266 ~~g~~~~~~~~~~~~~adv~v~ps~--~e~~~~~~~Eama~G~PvI~~~~~~~~~ 318 (375)
T cd03821 266 FTGMLYGEDKAAALADADLFVLPSH--SENFGIVVAEALACGTPVVTTDKVPWQE 318 (375)
T ss_pred EcCCCChHHHHHHHhhCCEEEeccc--cCCCCcHHHHHHhcCCCEEEcCCCCHHH
Confidence 999998 89999999999999999 8999999999999999999999988754
No 15
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.93 E-value=2.1e-24 Score=232.83 Aligned_cols=304 Identities=16% Similarity=0.156 Sum_probs=198.9
Q ss_pred CeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhH---------H----------hcCCeEEEe
Q 006050 243 RKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---------L----------ARRKIKVLE 299 (663)
Q Consensus 243 kKILLI~heLs----~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~e---------L----------~~~gIkVl~ 299 (663)
+||++|+.|.. .||...++-+|+++|.+.||+|.+++.. .+.+... + ...||+|+-
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~ 79 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPG-YPAIREKLRDAQVVGRLDLFTVLFGHLEGDGVPVYL 79 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecC-CcchhhhhcCceEEEEeeeEEEEEEeEEcCCceEEE
Confidence 58999998853 6899999999999999999999988743 3333211 1 225677651
Q ss_pred C-------CC------Cch-----hh---------hhcCccEEEECchhhHHHHHHHHHhC---CCCCccEEEEEeehhh
Q 006050 300 D-------RG------EPS-----FK---------TSMKADLVIAGSAVCATWIDQYITRF---PAGGSQVVWWIMENRR 349 (663)
Q Consensus 300 ~-------~~------~~s-----fk---------~~~k~DLVianSav~aswi~~yi~~~---pa~~~~vvwwi~E~r~ 349 (663)
. +. +.. |- ...++|+||+|...++ .+..++.+. .....++++.+|....
T Consensus 80 v~~~~~~~~~~~y~~~d~~~r~~~f~~~~~~~~~~~~~~pDiiH~h~w~~~-~~~~~l~~~~~~~~~~~~~v~TiH~~~~ 158 (466)
T PRK00654 80 IDAPHLFDRPSGYGYPDNGERFAFFSWAAAEFAEGLDPRPDIVHAHDWHTG-LIPALLKEKYWRGYPDIKTVFTIHNLAY 158 (466)
T ss_pred EeCHHHcCCCCCCCCcChHHHHHHHHHHHHHHHHhcCCCCceEEECCcHHH-HHHHHHHHhhhccCCCCCEEEEcCCCcC
Confidence 1 00 000 10 1138999999964332 333333311 1113456777774310
Q ss_pred h----------------hH-----------HHHHHHHhcCCEEEEecHHHHHHHHHHhH------hhcccCCCCcEEeec
Q 006050 350 E----------------YF-----------DRAKLVLDRVKLLVFLSESQTKQWLTWCE------EEKLKLRSQPAVVPL 396 (663)
Q Consensus 350 ~----------------yf-----------~r~k~vl~rvk~lIflSes~~k~w~~~~~------~~~i~l~s~~~VVp~ 396 (663)
. ++ ...+..+..++.++++|+...+...+... ..+.. ..++.+|||
T Consensus 159 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vitvS~~~~~ei~~~~~~~gl~~~~~~~-~~ki~vI~N 237 (466)
T PRK00654 159 QGLFPAEILGELGLPAEAFHLEGLEFYGQISFLKAGLYYADRVTTVSPTYAREITTPEFGYGLEGLLRAR-SGKLSGILN 237 (466)
T ss_pred CCcCCHHHHHHcCCChHHcCchhhhcCCcccHHHHHHHhcCcCeeeCHHHHHHhccccCCcChHHHHHhc-ccCceEecC
Confidence 0 00 11123467789999999987766432100 01111 346889999
Q ss_pred CcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCC-CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCC
Q 006050 397 SVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD-QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSM 475 (663)
Q Consensus 397 gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~-~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~ 475 (663)
||+.+.+... +.......|+++.+. .+...++.+|+++|+++ +.++|+++||+.++||+++|++|+..+.++ +.
T Consensus 238 Gid~~~~~p~--~~~~~~~~~~~~~~~-~k~~~k~~l~~~~gl~~~~~~~i~~vGRl~~~KG~~~li~a~~~l~~~--~~ 312 (466)
T PRK00654 238 GIDYDIWNPE--TDPLLAANYSADDLE-GKAENKRALQERFGLPDDDAPLFAMVSRLTEQKGLDLVLEALPELLEQ--GG 312 (466)
T ss_pred CCCccccCCc--cCcccccccChhhhh-chHHHHHHHHHHhCCCCCCCcEEEEeeccccccChHHHHHHHHHHHhc--CC
Confidence 9998754321 111112245544442 23334567899999985 678999999999999999999999998543 11
Q ss_pred ChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCC
Q 006050 476 DDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGS 555 (663)
Q Consensus 476 ~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~ 555 (663)
T Consensus 313 -------------------------------------------------------------------------------- 312 (466)
T PRK00654 313 -------------------------------------------------------------------------------- 312 (466)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEE-EcCCcch-HHHHHHHccEEEEcCCC
Q 006050 556 GHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAML-WTPATTR-VASLYSAADVYVINSQG 633 (663)
Q Consensus 556 ~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~-~~G~~~d-v~~lysaADV~V~pS~~ 633 (663)
-++++|. |. .+| ++.++.++++++ .+|. +.|+..+ +..+|++||++|+||.
T Consensus 313 ------------------~lvivG~-g~----~~~-~~~l~~l~~~~~--~~v~~~~g~~~~~~~~~~~~aDv~v~PS~- 365 (466)
T PRK00654 313 ------------------QLVLLGT-GD----PEL-EEAFRALAARYP--GKVGVQIGYDEALAHRIYAGADMFLMPSR- 365 (466)
T ss_pred ------------------EEEEEec-Cc----HHH-HHHHHHHHHHCC--CcEEEEEeCCHHHHHHHHhhCCEEEeCCC-
Confidence 0266775 32 123 455888888876 3454 5777654 5689999999999999
Q ss_pred CCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 634 LGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 634 ~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.|+||++++||||||+|||+++++++.+
T Consensus 366 -~E~~gl~~lEAma~G~p~V~~~~gG~~e 393 (466)
T PRK00654 366 -FEPCGLTQLYALRYGTLPIVRRTGGLAD 393 (466)
T ss_pred -CCCchHHHHHHHHCCCCEEEeCCCCccc
Confidence 9999999999999999999999999875
No 16
>PLN02316 synthase/transferase
Probab=99.93 E-value=4.2e-24 Score=250.28 Aligned_cols=306 Identities=13% Similarity=0.116 Sum_probs=202.9
Q ss_pred CCeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChh----HH------------------hcCCe
Q 006050 242 SRKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP----EL------------------ARRKI 295 (663)
Q Consensus 242 ~kKILLI~heLs----~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~----eL------------------~~~gI 295 (663)
.+|||+|+.|.. .||---++-.|+++|++.||+|.+++...+ .+.. .+ ...|+
T Consensus 587 pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~-~i~~~~~~~~~~~~~~~~~~~~~~v~~~~~~GV 665 (1036)
T PLN02316 587 PMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYD-CLNLSHVKDLHYQRSYSWGGTEIKVWFGKVEGL 665 (1036)
T ss_pred CcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCc-ccchhhcccceEEEEeccCCEEEEEEEEEECCc
Confidence 489999998886 467778889999999999999999875433 2111 01 01244
Q ss_pred EEE--eCCC-C-------------chh------------hhhcCccEEEECchhhHHHHHHHHHh----CCCCCccEEEE
Q 006050 296 KVL--EDRG-E-------------PSF------------KTSMKADLVIAGSAVCATWIDQYITR----FPAGGSQVVWW 343 (663)
Q Consensus 296 kVl--~~~~-~-------------~sf------------k~~~k~DLVianSav~aswi~~yi~~----~pa~~~~vvww 343 (663)
.++ +... . ..| ....++|+||+|.... .++..++.. ......+++..
T Consensus 666 ~vyfl~~~~~~F~r~~~Yg~~Dd~~RF~~F~~Aale~l~~~~~~PDIIHaHDW~t-alva~llk~~~~~~~~~~~p~V~T 744 (1036)
T PLN02316 666 SVYFLEPQNGMFWAGCVYGCRNDGERFGFFCHAALEFLLQSGFHPDIIHCHDWSS-APVAWLFKDHYAHYGLSKARVVFT 744 (1036)
T ss_pred EEEEEeccccccCCCCCCCchhHHHHHHHHHHHHHHHHHhcCCCCCEEEECCChH-HHHHHHHHHhhhhhccCCCCEEEE
Confidence 443 1110 0 001 0123799999996422 233333321 11233467777
Q ss_pred EeehhhhhHHHHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccC-CCCcEEeecCcchhhhhhhccccCCCCCCCChhhH
Q 006050 344 IMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM 422 (663)
Q Consensus 344 i~E~r~~yf~r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l-~s~~~VVp~gVndela~vagi~~slntp~~s~ek~ 422 (663)
+|.... .....+..+.+++.++++|+...+.... ...+.. ..++.+|||||+.+.+.... .......|+++.+
T Consensus 745 iHnl~~-~~n~lk~~l~~AD~ViTVS~tya~EI~~---~~~l~~~~~Kl~vI~NGID~~~w~P~t--D~~lp~~y~~~~~ 818 (1036)
T PLN02316 745 IHNLEF-GANHIGKAMAYADKATTVSPTYSREVSG---NSAIAPHLYKFHGILNGIDPDIWDPYN--DNFIPVPYTSENV 818 (1036)
T ss_pred eCCccc-chhHHHHHHHHCCEEEeCCHHHHHHHHh---ccCcccccCCEEEEECCccccccCCcc--cccccccCCchhh
Confidence 884321 1111345577899999999987655332 112222 24689999999876432111 0011123444433
Q ss_pred HHhhHHHHHHHHHHhCCCC-CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccc
Q 006050 423 REKRNLLRDSVRKEMGLTD-QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRG 501 (663)
Q Consensus 423 ~ekr~~lr~~vR~elGL~~-~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~ 501 (663)
.+.+...+..+|+++|+++ +.++|++||||.++||+++|++|+..+++. .. +
T Consensus 819 ~~gK~~~k~~Lr~~lGL~~~d~plVg~VGRL~~qKGvdlLi~Al~~ll~~--~~------------------------q- 871 (1036)
T PLN02316 819 VEGKRAAKEALQQRLGLKQADLPLVGIITRLTHQKGIHLIKHAIWRTLER--NG------------------------Q- 871 (1036)
T ss_pred hhhhhhhHHHHHHHhCCCcccCeEEEEEeccccccCHHHHHHHHHHHhhc--Cc------------------------E-
Confidence 2333444667899999984 678999999999999999999999988642 11 0
Q ss_pred cccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeec
Q 006050 502 RGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSV 581 (663)
Q Consensus 502 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~ 581 (663)
++++|+
T Consensus 872 -------------------------------------------------------------------------lVIvG~- 877 (1036)
T PLN02316 872 -------------------------------------------------------------------------VVLLGS- 877 (1036)
T ss_pred -------------------------------------------------------------------------EEEEeC-
Confidence 266776
Q ss_pred CCCCCChhHHHHHHHHHHHhCCC--CCcEEEcCCcchH--HHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 582 GSKSNKVPYVKEILEFLSQHSNL--SKAMLWTPATTRV--ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 582 g~~~n~~~y~k~~L~~l~~~~gL--s~~V~~~G~~~dv--~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
|+ +.+| ++.++.+++++++ +++|.|++..++. ..+|++||+||+||+ .|+||++++||||||+|+|++++
T Consensus 878 Gp---d~~~-e~~l~~La~~Lg~~~~~rV~f~g~~de~lah~iyaaADiflmPS~--~EP~GLvqLEAMa~GtppVvs~v 951 (1036)
T PLN02316 878 AP---DPRI-QNDFVNLANQLHSSHHDRARLCLTYDEPLSHLIYAGADFILVPSI--FEPCGLTQLTAMRYGSIPVVRKT 951 (1036)
T ss_pred CC---CHHH-HHHHHHHHHHhCccCCCeEEEEecCCHHHHHHHHHhCcEEEeCCc--ccCccHHHHHHHHcCCCeEEEcC
Confidence 33 1233 5568889998876 6799998877754 379999999999999 99999999999999999999999
Q ss_pred CCccC
Q 006050 658 KLLSI 662 (663)
Q Consensus 658 ~~l~~ 662 (663)
|||..
T Consensus 952 GGL~D 956 (1036)
T PLN02316 952 GGLFD 956 (1036)
T ss_pred CCcHh
Confidence 99864
No 17
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=99.93 E-value=2.1e-24 Score=213.82 Aligned_cols=260 Identities=18% Similarity=0.132 Sum_probs=172.7
Q ss_pred CeEEEEeCCC------CCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeC--CC-----C------
Q 006050 243 RKFILIFHEL------SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED--RG-----E------ 303 (663)
Q Consensus 243 kKILLI~heL------s~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~--~~-----~------ 303 (663)
|||++|.+++ ..||+++.+.+|+.+|.+.||+|.+++...... ...+.......... .. .
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSKT-AAPLVPVVPEPLRLDAPGRDRAEAEALALA 79 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCCc-ccceeeccCCCcccccchhhHhhHHHHHHH
Confidence 6999999988 789999999999999999999999987543321 11111100000000 00 0
Q ss_pred chhhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHHHHHHhcCCEEEEecHHHHHHHHHHhHhh
Q 006050 304 PSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (663)
Q Consensus 304 ~sfk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~k~vl~rvk~lIflSes~~k~w~~~~~~~ 383 (663)
..+....++|+||+++.....+ +. .....++++++|.....+...........+.++++|+...+.|...
T Consensus 80 ~~~~~~~~~Divh~~~~~~~~~----~~--~~~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~---- 149 (335)
T cd03802 80 ERALAAGDFDIVHNHSLHLPLP----FA--RPLPVPVVTTLHGPPDPELLKLYYAARPDVPFVSISDAQRRPWPPL---- 149 (335)
T ss_pred HHHHhcCCCCEEEecCcccchh----hh--cccCCCEEEEecCCCCcccchHHHhhCcCCeEEEecHHHHhhcccc----
Confidence 0111346799999998654432 11 1223457777776543333322333455677889998876654321
Q ss_pred cccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH
Q 006050 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE 463 (663)
Q Consensus 384 ~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLe 463 (663)
.+..+||+|++.+.+ .+ .+..+..|+++|++.+.||++.+++
T Consensus 150 -----~~~~vi~ngvd~~~~--------------~~-------------------~~~~~~~i~~~Gr~~~~Kg~~~li~ 191 (335)
T cd03802 150 -----PWVATVHNGIDLDDY--------------PF-------------------RGPKGDYLLFLGRISPEKGPHLAIR 191 (335)
T ss_pred -----cccEEecCCcChhhC--------------CC-------------------CCCCCCEEEEEEeeccccCHHHHHH
Confidence 467899999876432 11 0123457899999999999999999
Q ss_pred HHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCccc
Q 006050 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (663)
Q Consensus 464 A~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~ 543 (663)
|++.. +.
T Consensus 192 ~~~~~-----~~-------------------------------------------------------------------- 198 (335)
T cd03802 192 AARRA-----GI-------------------------------------------------------------------- 198 (335)
T ss_pred HHHhc-----CC--------------------------------------------------------------------
Confidence 86542 11
Q ss_pred ccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCC-CCCcEEEcCCcc--hHHHH
Q 006050 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSN-LSKAMLWTPATT--RVASL 620 (663)
Q Consensus 544 ~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~g-Ls~~V~~~G~~~--dv~~l 620 (663)
+ .+++|.. + ..++... ..+... +.++|.|+|+.+ ++..+
T Consensus 199 -----------------~-------------l~i~G~~-~---~~~~~~~----~~~~~~~~~~~v~~~G~~~~~~~~~~ 240 (335)
T cd03802 199 -----------------P-------------LKLAGPV-S---DPDYFYR----EIAPELLDGPDIEYLGEVGGAEKAEL 240 (335)
T ss_pred -----------------e-------------EEEEeCC-C---CHHHHHH----HHHHhcccCCcEEEeCCCCHHHHHHH
Confidence 0 2567763 2 1223222 222222 678999999987 57899
Q ss_pred HHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccCC
Q 006050 621 YSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSIM 663 (663)
Q Consensus 621 ysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~~ 663 (663)
|++||++|+||. ..|+||++++||||||+|||+++.+++.++
T Consensus 241 ~~~~d~~v~ps~-~~E~~~~~~lEAma~G~PvI~~~~~~~~e~ 282 (335)
T cd03802 241 LGNARALLFPIL-WEEPFGLVMIEAMACGTPVIAFRRGAVPEV 282 (335)
T ss_pred HHhCcEEEeCCc-ccCCcchHHHHHHhcCCCEEEeCCCCchhh
Confidence 999999999996 259999999999999999999999998753
No 18
>PRK10307 putative glycosyl transferase; Provisional
Probab=99.93 E-value=2.1e-23 Score=218.37 Aligned_cols=281 Identities=18% Similarity=0.192 Sum_probs=187.9
Q ss_pred CeEEEEeCCC--CCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCC-----------hhHHhcCCeEEEeCCCC----c-
Q 006050 243 RKFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGL-----------MPELARRKIKVLEDRGE----P- 304 (663)
Q Consensus 243 kKILLI~heL--s~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL-----------~~eL~~~gIkVl~~~~~----~- 304 (663)
+||++|.+.. ..+|++.++.+|+++|.+.||+|++++....... ..+....|++|+..+.. .
T Consensus 1 mkIlii~~~~~P~~~g~~~~~~~l~~~L~~~G~~V~vit~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~r~~~~~~~~~~ 80 (412)
T PRK10307 1 MKILVYGINYAPELTGIGKYTGEMAEWLAARGHEVRVITAPPYYPQWRVGEGYSAWRYRRESEGGVTVWRCPLYVPKQPS 80 (412)
T ss_pred CeEEEEecCCCCCccchhhhHHHHHHHHHHCCCeEEEEecCCCCCCCCCCcccccccceeeecCCeEEEEccccCCCCcc
Confidence 5899998754 3589999999999999999999999985421100 01112357777632210 0
Q ss_pred ---------hh--------hh--hcCccEEEECchhh-HHHHHHHHHhCCCCCccEEEEEeehhh-----------hhHH
Q 006050 305 ---------SF--------KT--SMKADLVIAGSAVC-ATWIDQYITRFPAGGSQVVWWIMENRR-----------EYFD 353 (663)
Q Consensus 305 ---------sf--------k~--~~k~DLVianSav~-aswi~~yi~~~pa~~~~vvwwi~E~r~-----------~yf~ 353 (663)
+| .. ..++|+||+++... ...+..+++.. .+.++++++|+... ..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Div~~~~p~~~~~~~~~~~~~~--~~~~~v~~~~d~~~~~~~~~~~~~~~~~~ 158 (412)
T PRK10307 81 GLKRLLHLGSFALSSFFPLLAQRRWRPDRVIGVVPTLFCAPGARLLARL--SGARTWLHIQDYEVDAAFGLGLLKGGKVA 158 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCEEEEeCCcHHHHHHHHHHHHh--hCCCEEEEeccCCHHHHHHhCCccCcHHH
Confidence 00 11 15799999975321 11111122221 12245555554221 0111
Q ss_pred -----HHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHH
Q 006050 354 -----RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNL 428 (663)
Q Consensus 354 -----r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~ 428 (663)
..+.++..++.++++|+...+.+. ..++. ..++.++|+|++.+.+. +... .
T Consensus 159 ~~~~~~~~~~~~~ad~ii~~S~~~~~~~~----~~~~~-~~~i~vi~ngvd~~~~~--------------~~~~-----~ 214 (412)
T PRK10307 159 RLATAFERSLLRRFDNVSTISRSMMNKAR----EKGVA-AEKVIFFPNWSEVARFQ--------------PVAD-----A 214 (412)
T ss_pred HHHHHHHHHHHhhCCEEEecCHHHHHHHH----HcCCC-cccEEEECCCcCHhhcC--------------CCCc-----c
Confidence 123446779999999998877643 33443 24678999999765321 1000 0
Q ss_pred HHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccc
Q 006050 429 LRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (663)
Q Consensus 429 lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~ 508 (663)
.+..++++++++++.++++++|++.+.||++.|++|++.+. +.|+.
T Consensus 215 ~~~~~~~~~~~~~~~~~i~~~G~l~~~kg~~~li~a~~~l~-~~~~~--------------------------------- 260 (412)
T PRK10307 215 DVDALRAQLGLPDGKKIVLYSGNIGEKQGLELVIDAARRLR-DRPDL--------------------------------- 260 (412)
T ss_pred chHHHHHHcCCCCCCEEEEEcCccccccCHHHHHHHHHHhc-cCCCe---------------------------------
Confidence 12346888999999999999999999999999999998772 22321
Q ss_pred ccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCCh
Q 006050 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV 588 (663)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~ 588 (663)
-++++|+ |+
T Consensus 261 -----------------------------------------------------------------~l~ivG~-g~----- 269 (412)
T PRK10307 261 -----------------------------------------------------------------IFVICGQ-GG----- 269 (412)
T ss_pred -----------------------------------------------------------------EEEEECC-Ch-----
Confidence 0266775 33
Q ss_pred hHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCC----CcHHHHHHHHcCCCEEEeCCCC
Q 006050 589 PYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGET----FGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 589 ~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~----FG~ViiEAMA~GlPVVatd~~~ 659 (663)
.++.++.+++.++++ +|.|+|..+ ++..+|++||++|+||. .|+ +|..++||||||+|||+|+.++
T Consensus 270 --~~~~l~~~~~~~~l~-~v~f~G~~~~~~~~~~~~~aDi~v~ps~--~e~~~~~~p~kl~eama~G~PVi~s~~~g 341 (412)
T PRK10307 270 --GKARLEKMAQCRGLP-NVHFLPLQPYDRLPALLKMADCHLLPQK--AGAADLVLPSKLTNMLASGRNVVATAEPG 341 (412)
T ss_pred --hHHHHHHHHHHcCCC-ceEEeCCCCHHHHHHHHHhcCEeEEeec--cCcccccCcHHHHHHHHcCCCEEEEeCCC
Confidence 134588888999996 799999875 89999999999999998 788 5777899999999999999876
No 19
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=99.93 E-value=3.9e-23 Score=199.03 Aligned_cols=264 Identities=23% Similarity=0.293 Sum_probs=181.6
Q ss_pred eEEEEeCCCC-CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCC------------ch---hh
Q 006050 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE------------PS---FK 307 (663)
Q Consensus 244 KILLI~heLs-~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~------------~s---fk 307 (663)
||+++++.+. .||+++.+.+++++|.+.||+|.+++.......... ...++.+...... .. +.
T Consensus 1 kI~i~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 79 (348)
T cd03820 1 KILFVIPSLGNAGGAERVLSNLANALAEKGHEVTIISLDKGEPPFYE-LDPKIKVIDLGDKRDSKLLARFKKLRRLRKLL 79 (348)
T ss_pred CeEEEeccccCCCChHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc-cCCccceeecccccccchhccccchHHHHHhh
Confidence 6899999999 999999999999999999999999986654311111 1233443322110 00 11
Q ss_pred hhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHH----H--HHHHHhcCCEEEEecHHHHHHHHHHhH
Q 006050 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFD----R--AKLVLDRVKLLVFLSESQTKQWLTWCE 381 (663)
Q Consensus 308 ~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~----r--~k~vl~rvk~lIflSes~~k~w~~~~~ 381 (663)
...++|+||.+......++.. +. ....+++.|.|.....+.. . .+..+..++.++++|+.... ..
T Consensus 80 ~~~~~d~i~~~~~~~~~~~~~-~~---~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~-----~~ 150 (348)
T cd03820 80 KNNKPDVVISFLTSLLTFLAS-LG---LKIVKLIVSEHNSPDAYKKRLRRLLLRRLLYRRADAVVVLTEEDRA-----LY 150 (348)
T ss_pred cccCCCEEEEcCchHHHHHHH-Hh---hccccEEEecCCCccchhhhhHHHHHHHHHHhcCCEEEEeCHHHHH-----Hh
Confidence 236899999987431112221 11 1113566666654322111 1 34457789999999987651 11
Q ss_pred hhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHH
Q 006050 382 EEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLL 461 (663)
Q Consensus 382 ~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlL 461 (663)
... ...+..++|++++....... .+.+...++++|++.+.||++.+
T Consensus 151 -~~~-~~~~~~vi~~~~~~~~~~~~--------------------------------~~~~~~~i~~~g~~~~~K~~~~l 196 (348)
T cd03820 151 -YKK-FNKNVVVIPNPLPFPPEEPS--------------------------------SDLKSKRILAVGRLVPQKGFDLL 196 (348)
T ss_pred -hcc-CCCCeEEecCCcChhhcccc--------------------------------CCCCCcEEEEEEeeccccCHHHH
Confidence 112 23468899999865421000 23456789999999999999999
Q ss_pred HHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCc
Q 006050 462 VESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSL 541 (663)
Q Consensus 462 LeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~ 541 (663)
++|++.+.+..|+.
T Consensus 197 ~~~~~~l~~~~~~~------------------------------------------------------------------ 210 (348)
T cd03820 197 IEAWAKIAKKHPDW------------------------------------------------------------------ 210 (348)
T ss_pred HHHHHHHHhcCCCe------------------------------------------------------------------
Confidence 99999996654442
Q ss_pred ccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHH
Q 006050 542 FTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLY 621 (663)
Q Consensus 542 f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~ly 621 (663)
-++++|. +. . ++.+.++++.+++.+.|.|.|..+++..+|
T Consensus 211 --------------------------------~l~i~G~-~~---~----~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~ 250 (348)
T cd03820 211 --------------------------------KLRIVGD-GP---E----REALEALIKELGLEDRVILLGFTKNIEEYY 250 (348)
T ss_pred --------------------------------EEEEEeC-CC---C----HHHHHHHHHHcCCCCeEEEcCCcchHHHHH
Confidence 0256675 22 1 233666788899999999999988999999
Q ss_pred HHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 622 SAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 622 saADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
+.||++++||. .|+||++++||||||+|||+++.++
T Consensus 251 ~~ad~~i~ps~--~e~~~~~~~Ea~a~G~Pvi~~~~~~ 286 (348)
T cd03820 251 AKASIFVLTSR--FEGFPMVLLEAMAFGLPVISFDCPT 286 (348)
T ss_pred HhCCEEEeCcc--ccccCHHHHHHHHcCCCEEEecCCC
Confidence 99999999999 8999999999999999999998754
No 20
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=99.93 E-value=5.7e-24 Score=219.65 Aligned_cols=271 Identities=14% Similarity=0.146 Sum_probs=176.1
Q ss_pred CeEEEEeCCCC-CCCHHHHHHHHHHHHHHC--CCeEEEEEEcCCCCChhHHhcCCe----EEEe---CCCCc------hh
Q 006050 243 RKFILIFHELS-MTGAPLSMMELATELLSC--GATVSAVVLSKRGGLMPELARRKI----KVLE---DRGEP------SF 306 (663)
Q Consensus 243 kKILLI~heLs-~gGAp~smmeLA~~L~s~--G~~V~vVvLs~~GgL~~eL~~~gI----kVl~---~~~~~------sf 306 (663)
|||+++.+.+. .||+++.+++++++|.+. |++|.+++.... .....+...++ .... .+... .+
T Consensus 1 mkI~~~~~~~~~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (359)
T PRK09922 1 MKIAFIGEAVSGFGGMETVISNVINTFEESKINCEMFFFCRNDK-MDKAWLKEIKYAQSFSNIKLSFLRRAKHVYNFSKW 79 (359)
T ss_pred CeeEEecccccCCCchhHHHHHHHHHhhhcCcceeEEEEecCCC-CChHHHHhcchhcccccchhhhhcccHHHHHHHHH
Confidence 68999998875 699999999999999999 788777664322 12222332221 1111 00000 11
Q ss_pred hhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHHHHHHhcCCEEEEecHHHHHHHHHHhHhhccc
Q 006050 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK 386 (663)
Q Consensus 307 k~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~ 386 (663)
....++|+||+++..+. ++............++++|.|-............+..++.++++|+...++.. ..++.
T Consensus 80 l~~~~~Dii~~~~~~~~-~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~d~~i~~S~~~~~~~~----~~~~~ 154 (359)
T PRK09922 80 LKETQPDIVICIDVISC-LYANKARKKSGKQFKIFSWPHFSLDHKKHAECKKITCADYHLAISSGIKEQMM----ARGIS 154 (359)
T ss_pred HHhcCCCEEEEcCHHHH-HHHHHHHHHhCCCCeEEEEecCcccccchhhhhhhhcCCEEEEcCHHHHHHHH----HcCCC
Confidence 23468999999976443 33333332221122455566532111110001113678899999998766633 33443
Q ss_pred CCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCC--CCCCHHHHHHH
Q 006050 387 LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN--PGKGQLLLVES 464 (663)
Q Consensus 387 l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~--p~KGqdlLLeA 464 (663)
.+++.++|++++.+.+.. |. + -.+++.+++++||+. +.||++.+++|
T Consensus 155 -~~ki~vi~N~id~~~~~~---------~~--~-------------------~~~~~~~i~~~Grl~~~~~k~~~~l~~a 203 (359)
T PRK09922 155 -AQRISVIYNPVEIKTIII---------PP--P-------------------ERDKPAVFLYVGRLKFEGQKNVKELFDG 203 (359)
T ss_pred -HHHEEEEcCCCCHHHccC---------CC--c-------------------ccCCCcEEEEEEEEecccCcCHHHHHHH
Confidence 246889999997432110 00 0 012467899999996 46999999999
Q ss_pred HHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccc
Q 006050 465 AQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTS 544 (663)
Q Consensus 465 ~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~ 544 (663)
+..+. ++.
T Consensus 204 ~~~~~---~~~--------------------------------------------------------------------- 211 (359)
T PRK09922 204 LSQTT---GEW--------------------------------------------------------------------- 211 (359)
T ss_pred HHhhC---CCe---------------------------------------------------------------------
Confidence 98762 110
Q ss_pred cCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc----hHHHH
Q 006050 545 IGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT----RVASL 620 (663)
Q Consensus 545 ~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~----dv~~l 620 (663)
-++++|. |+ . ++.++.++++++++++|.|+|+++ .++.+
T Consensus 212 -----------------------------~l~ivG~-g~------~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~ 254 (359)
T PRK09922 212 -----------------------------QLHIIGD-GS------D-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQK 254 (359)
T ss_pred -----------------------------EEEEEeC-Cc------c-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHH
Confidence 0267776 33 1 344788999999999999999875 46777
Q ss_pred HHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC-CCCcc
Q 006050 621 YSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ-KKLLS 661 (663)
Q Consensus 621 ysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd-~~~l~ 661 (663)
|+.||++|+||. .|+||++++||||||+|||+|+ .++..
T Consensus 255 ~~~~d~~v~~s~--~Egf~~~~lEAma~G~Pvv~s~~~~g~~ 294 (359)
T PRK09922 255 IKNVSALLLTSK--FEGFPMTLLEAMSYGIPCISSDCMSGPR 294 (359)
T ss_pred HhcCcEEEECCc--ccCcChHHHHHHHcCCCEEEeCCCCChH
Confidence 888999999999 9999999999999999999999 77764
No 21
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.92 E-value=3e-23 Score=222.97 Aligned_cols=276 Identities=20% Similarity=0.259 Sum_probs=181.7
Q ss_pred cCCCeEEEEeCCC---CCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCC---------Cch--
Q 006050 240 VWSRKFILIFHEL---SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG---------EPS-- 305 (663)
Q Consensus 240 ~~~kKILLI~heL---s~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~---------~~s-- 305 (663)
.+++||+++++.. ..||++..+.+|+++|.+.||+|++++... + ...+ ..++.++.... ..+
T Consensus 56 ~~~mrI~~~~~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~-~-~~~~--~~g~~v~~~~~~~~~~~~~~~~~~~ 131 (465)
T PLN02871 56 SRPRRIALFVEPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDE-G-VPQE--FHGAKVIGSWSFPCPFYQKVPLSLA 131 (465)
T ss_pred CCCceEEEEECCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCC-C-CCcc--ccCceeeccCCcCCccCCCceeecc
Confidence 4579999998753 358999999999999999999999987543 2 2111 13444432110 000
Q ss_pred -------hhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhh-------------HHHHHHHHhcCCEE
Q 006050 306 -------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY-------------FDRAKLVLDRVKLL 365 (663)
Q Consensus 306 -------fk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~y-------------f~r~k~vl~rvk~l 365 (663)
+....++|+||+++.....|....+... . +.+++...|.....| +...+.+...++.+
T Consensus 132 ~~~~l~~~i~~~kpDiIh~~~~~~~~~~~~~~ak~-~-~ip~V~~~h~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ad~i 209 (465)
T PLN02871 132 LSPRIISEVARFKPDLIHASSPGIMVFGALFYAKL-L-CVPLVMSYHTHVPVYIPRYTFSWLVKPMWDIIRFLHRAADLT 209 (465)
T ss_pred CCHHHHHHHHhCCCCEEEECCCchhHHHHHHHHHH-h-CCCEEEEEecCchhhhhcccchhhHHHHHHHHHHHHhhCCEE
Confidence 1123689999998743222322222221 1 223444444321111 01113345678999
Q ss_pred EEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhC-CCCCCE
Q 006050 366 VFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG-LTDQDM 444 (663)
Q Consensus 366 IflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elG-L~~~~~ 444 (663)
+++|+...+... ..+.....++.++|+|++.+.+. |.+.. ...++.+. ..++++
T Consensus 210 i~~S~~~~~~l~----~~~~~~~~kv~vi~nGvd~~~f~----------p~~~~-----------~~~~~~~~~~~~~~~ 264 (465)
T PLN02871 210 LVTSPALGKELE----AAGVTAANRIRVWNKGVDSESFH----------PRFRS-----------EEMRARLSGGEPEKP 264 (465)
T ss_pred EECCHHHHHHHH----HcCCCCcCeEEEeCCccCccccC----------Ccccc-----------HHHHHHhcCCCCCCe
Confidence 999998776633 33433345688999999865321 11111 12344443 345678
Q ss_pred EEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccccccccccccccccc
Q 006050 445 LVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSES 524 (663)
Q Consensus 445 lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~ 524 (663)
+|+++|++.+.||++.|+++++.+ |+.
T Consensus 265 ~i~~vGrl~~~K~~~~li~a~~~~----~~~------------------------------------------------- 291 (465)
T PLN02871 265 LIVYVGRLGAEKNLDFLKRVMERL----PGA------------------------------------------------- 291 (465)
T ss_pred EEEEeCCCchhhhHHHHHHHHHhC----CCc-------------------------------------------------
Confidence 999999999999999999988765 331
Q ss_pred ccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCC
Q 006050 525 FTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL 604 (663)
Q Consensus 525 ~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gL 604 (663)
-++++|+ |+ + ++.++++++.
T Consensus 292 -------------------------------------------------~l~ivG~-G~------~-~~~l~~~~~~--- 311 (465)
T PLN02871 292 -------------------------------------------------RLAFVGD-GP------Y-REELEKMFAG--- 311 (465)
T ss_pred -------------------------------------------------EEEEEeC-Ch------H-HHHHHHHhcc---
Confidence 0267775 43 2 3446666663
Q ss_pred CCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 605 SKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 605 s~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.+|+|+|+.+ ++..+|++||++|+||. .|+||++++||||||+|||+++.+++.+
T Consensus 312 -~~V~f~G~v~~~ev~~~~~~aDv~V~pS~--~E~~g~~vlEAmA~G~PVI~s~~gg~~e 368 (465)
T PLN02871 312 -TPTVFTGMLQGDELSQAYASGDVFVMPSE--SETLGFVVLEAMASGVPVVAARAGGIPD 368 (465)
T ss_pred -CCeEEeccCCHHHHHHHHHHCCEEEECCc--ccccCcHHHHHHHcCCCEEEcCCCCcHh
Confidence 3699999984 89999999999999998 9999999999999999999999998754
No 22
>PRK14099 glycogen synthase; Provisional
Probab=99.92 E-value=2.8e-23 Score=227.19 Aligned_cols=308 Identities=16% Similarity=0.144 Sum_probs=200.5
Q ss_pred cCCCeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHH---------h-------------cC
Q 006050 240 VWSRKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL---------A-------------RR 293 (663)
Q Consensus 240 ~~~kKILLI~heLs----~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL---------~-------------~~ 293 (663)
|.++|||+|..|.. .||--=++-.|..+|.+.||+|.+++. .-+.+.... . ..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVP-GYPAVLAGIEDAEQVHSFPDLFGGPARLLAARAG 79 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeC-CCcchhhhhcCceEEEEEeeeCCceEEEEEEEeC
Confidence 57899999999986 467777888999999999999998764 334332111 0 02
Q ss_pred CeEEE--e------CCC------------Cc--h---hhh-----------hcCccEEEECchhhHHHHHHHHHhCCCCC
Q 006050 294 KIKVL--E------DRG------------EP--S---FKT-----------SMKADLVIAGSAVCATWIDQYITRFPAGG 337 (663)
Q Consensus 294 gIkVl--~------~~~------------~~--s---fk~-----------~~k~DLVianSav~aswi~~yi~~~pa~~ 337 (663)
||+++ + ..+ +. . |-. ..++|+||+|...++ ++..++.......
T Consensus 80 ~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d~~~rf~~f~~a~~~~~~~~~~~~~pDIiH~Hdw~~~-l~~~~l~~~~~~~ 158 (485)
T PRK14099 80 GLDLFVLDAPHLYDRPGNPYVGPDGKDWPDNAQRFAALARAAAAIGQGLVPGFVPDIVHAHDWQAG-LAPAYLHYSGRPA 158 (485)
T ss_pred CceEEEEeChHhhCCCCCCCCCccCCCCCcHHHHHHHHHHHHHHHHhhhccCCCCCEEEECCcHHH-HHHHHHHhCCCCC
Confidence 34432 1 000 00 0 100 247999999974333 3344443211122
Q ss_pred ccEEEEEeehhh----------------hhH--------H---HHHHHHhcCCEEEEecHHHHHHHHHHhHhhccc----
Q 006050 338 SQVVWWIMENRR----------------EYF--------D---RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK---- 386 (663)
Q Consensus 338 ~~vvwwi~E~r~----------------~yf--------~---r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~---- 386 (663)
.+.+..||.... .+| . ..+..+.+++.++++|+...+..++.....++.
T Consensus 159 ~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~i~~ad~vitVS~~~a~ei~~~~~g~gl~~~l~ 238 (485)
T PRK14099 159 PGTVFTIHNLAFQGQFPRELLGALGLPPSAFSLDGVEYYGGIGYLKAGLQLADRITTVSPTYALEIQGPEAGMGLDGLLR 238 (485)
T ss_pred CCEEEeCCCCCCCCcCCHHHHHHcCCChHHcCchhhhhCCCccHHHHHHHhcCeeeecChhHHHHHhcccCCcChHHHHH
Confidence 346666764210 111 0 124456789999999998877643210001110
Q ss_pred -CCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHHHH
Q 006050 387 -LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVE 463 (663)
Q Consensus 387 -l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~--~~~lVl~VGri~p~KGqdlLLe 463 (663)
...++.+|+|||+.+.+.... .......|+.+.+ +.+...+..+|+++|++. +.++++++||+.++||+++|++
T Consensus 239 ~~~~ki~vI~NGID~~~f~p~~--~~~~~~~~~~~~~-~~k~~~k~~l~~~~gl~~~~~~~li~~VgRL~~~KG~d~Li~ 315 (485)
T PRK14099 239 QRADRLSGILNGIDTAVWNPAT--DELIAATYDVETL-AARAANKAALQARFGLDPDPDALLLGVISRLSWQKGLDLLLE 315 (485)
T ss_pred hhCCCeEEEecCCchhhccccc--cchhhhcCChhHH-HhHHHhHHHHHHHcCCCcccCCcEEEEEecCCccccHHHHHH
Confidence 134688999999876543211 1111223444444 333445678899999974 4678999999999999999999
Q ss_pred HHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCccc
Q 006050 464 SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFT 543 (663)
Q Consensus 464 A~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~ 543 (663)
|+..+.++...
T Consensus 316 A~~~l~~~~~~--------------------------------------------------------------------- 326 (485)
T PRK14099 316 ALPTLLGEGAQ--------------------------------------------------------------------- 326 (485)
T ss_pred HHHHHHhcCcE---------------------------------------------------------------------
Confidence 99988542110
Q ss_pred ccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcE-EEcCCcchHHHHHH
Q 006050 544 SIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAM-LWTPATTRVASLYS 622 (663)
Q Consensus 544 ~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V-~~~G~~~dv~~lys 622 (663)
++++|+ |. .+ .++.+++++++++ +++ .|+|+.++++.+|.
T Consensus 327 -------------------------------lvivG~-G~----~~-~~~~l~~l~~~~~--~~v~~~~G~~~~l~~~~~ 367 (485)
T PRK14099 327 -------------------------------LALLGS-GD----AE-LEARFRAAAQAYP--GQIGVVIGYDEALAHLIQ 367 (485)
T ss_pred -------------------------------EEEEec-CC----HH-HHHHHHHHHHHCC--CCEEEEeCCCHHHHHHHH
Confidence 267776 32 12 3555888888764 455 79999889999874
Q ss_pred -HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 623 -AADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 623 -aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+||+||+||. .|+||++++||||||+|+|+++++++.+
T Consensus 368 a~aDifv~PS~--~E~fGl~~lEAma~G~ppVvs~~GGl~d 406 (485)
T PRK14099 368 AGADALLVPSR--FEPCGLTQLCALRYGAVPVVARVGGLAD 406 (485)
T ss_pred hcCCEEEECCc--cCCCcHHHHHHHHCCCCcEEeCCCCccc
Confidence 6999999999 9999999999999999888899999864
No 23
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.92 E-value=2.2e-23 Score=224.09 Aligned_cols=305 Identities=18% Similarity=0.179 Sum_probs=196.0
Q ss_pred CeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHH--------------------------hc
Q 006050 243 RKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL--------------------------AR 292 (663)
Q Consensus 243 kKILLI~heLs----~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL--------------------------~~ 292 (663)
+||++|+.|.. .||...++-.|+++|.++||+|.+++.. .+.+.... ..
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~-y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPA-YGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVV 79 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecC-CcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEE
Confidence 58999999943 5788889999999999999999998743 33332211 11
Q ss_pred CCeEEE--e-----CC-C--C------c--h---hh---------hhcCccEEEECchhhHHHHHHHHHhCCCC-CccEE
Q 006050 293 RKIKVL--E-----DR-G--E------P--S---FK---------TSMKADLVIAGSAVCATWIDQYITRFPAG-GSQVV 341 (663)
Q Consensus 293 ~gIkVl--~-----~~-~--~------~--s---fk---------~~~k~DLVianSav~aswi~~yi~~~pa~-~~~vv 341 (663)
.|++++ + .+ . . . . |. ...++|+||+|..-++ .+..++...... ..+++
T Consensus 80 ~~v~~~~i~~~~~~~r~~~~y~~~~~d~~~r~~~f~~a~~~~~~~~~~~~DiiH~hdw~~~-~~~~~l~~~~~~~~~~~v 158 (473)
T TIGR02095 80 EGVPVYFIDNPSLFDRPGGIYGDDYPDNAERFAFFSRAAAELLSGLGWQPDVVHAHDWHTA-LVPALLKAVYRPNPIKTV 158 (473)
T ss_pred CCceEEEEECHHHcCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEECCcHHH-HHHHHHHhhccCCCCCEE
Confidence 345543 1 01 0 0 0 0 10 1247999999974322 233333322110 24566
Q ss_pred EEEeehh--h----h----------hH-----------HHHHHHHhcCCEEEEecHHHHHHHHHHhHhhccc-----CCC
Q 006050 342 WWIMENR--R----E----------YF-----------DRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLK-----LRS 389 (663)
Q Consensus 342 wwi~E~r--~----~----------yf-----------~r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~-----l~s 389 (663)
+.+|... + . ++ ...+..+.+++.++++|+...+...+.....++. .+.
T Consensus 159 ~TiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~ad~v~tVS~~~~~ei~~~~~~~~l~~~l~~~~~ 238 (473)
T TIGR02095 159 FTIHNLAYQGVFPADDFSELGLPPEYFHMEGLEFYGRVNFLKGGIVYADRVTTVSPTYAREILTPEFGYGLDGVLKARSG 238 (473)
T ss_pred EEcCCCccCCcCCHHHHHHcCCChHHcCchhhhcCCchHHHHHHHHhCCcCeecCHhHHHHhcCCcCCccchhHHHhcCC
Confidence 6666431 0 0 01 0123356788999999998766643210001110 134
Q ss_pred CcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCC--CCEEEEEEecCCCCCCHHHHHHHHHH
Q 006050 390 QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGKGQLLLVESAQL 467 (663)
Q Consensus 390 ~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~--~~~lVl~VGri~p~KGqdlLLeA~~~ 467 (663)
++.+||||++.+.+... ........|+.+.+. .+...+..+|+++|++. +.++|+++||+.++||+++|++|+..
T Consensus 239 ki~~I~NGid~~~~~p~--~~~~~~~~~~~~~~~-~k~~~k~~l~~~~gl~~~~~~~~i~~vGrl~~~Kg~~~li~a~~~ 315 (473)
T TIGR02095 239 KLRGILNGIDTEVWNPA--TDPYLKANYSADDLA-GKAENKEALQEELGLPVDDDVPLFGVISRLTQQKGVDLLLAALPE 315 (473)
T ss_pred CeEEEeCCCCccccCCC--CCcccccCcCccchh-hhhhhHHHHHHHcCCCccCCCCEEEEEecCccccChHHHHHHHHH
Confidence 68899999987754321 111111233443332 23334567899999986 78999999999999999999999999
Q ss_pred hHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCC
Q 006050 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (663)
Q Consensus 468 l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~ 547 (663)
+.++. .
T Consensus 316 l~~~~--~------------------------------------------------------------------------ 321 (473)
T TIGR02095 316 LLELG--G------------------------------------------------------------------------ 321 (473)
T ss_pred HHHcC--c------------------------------------------------------------------------
Confidence 85421 1
Q ss_pred ccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHcc
Q 006050 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAAD 625 (663)
Q Consensus 548 ~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaAD 625 (663)
-++++|. |. .++ ++.++.++++++ .+|.+.+..+ .+..+|++||
T Consensus 322 --------------------------~lvi~G~-g~----~~~-~~~l~~~~~~~~--~~v~~~~~~~~~~~~~~~~~aD 367 (473)
T TIGR02095 322 --------------------------QLVVLGT-GD----PEL-EEALRELAERYP--GNVRVIIGYDEALAHLIYAGAD 367 (473)
T ss_pred --------------------------EEEEECC-CC----HHH-HHHHHHHHHHCC--CcEEEEEcCCHHHHHHHHHhCC
Confidence 0266775 32 123 455888887654 5677666544 4778999999
Q ss_pred EEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 626 VYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 626 V~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
++|+||. .|+||++++||||||+|||+++++++.+
T Consensus 368 v~l~pS~--~E~~gl~~lEAma~G~pvI~s~~gg~~e 402 (473)
T TIGR02095 368 FILMPSR--FEPCGLTQLYAMRYGTVPIVRRTGGLAD 402 (473)
T ss_pred EEEeCCC--cCCcHHHHHHHHHCCCCeEEccCCCccc
Confidence 9999999 9999999999999999999999999865
No 24
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=99.92 E-value=1.8e-23 Score=223.42 Aligned_cols=287 Identities=17% Similarity=0.201 Sum_probs=177.2
Q ss_pred CCCCHHHHHHHHHHHHHHCCC--eEEEEEEcCCC-----CChhHHh--cCCeEEEeCCCCc------------------h
Q 006050 253 SMTGAPLSMMELATELLSCGA--TVSAVVLSKRG-----GLMPELA--RRKIKVLEDRGEP------------------S 305 (663)
Q Consensus 253 s~gGAp~smmeLA~~L~s~G~--~V~vVvLs~~G-----gL~~eL~--~~gIkVl~~~~~~------------------s 305 (663)
..||++.++.+||++|.++|| +|++++....+ ++..... ..|++|+...... .
T Consensus 24 ~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~~~~~~~~~~~~~~~~~~gv~v~r~~~~~~~~~~~~~~~~~~~~~~~~ 103 (439)
T TIGR02472 24 DTGGQTKYVLELARALARRSEVEQVDLVTRLIKDAKVSPDYAQPIERIAPGARIVRLPFGPRRYLRKELLWPYLDELADN 103 (439)
T ss_pred CCCCcchHHHHHHHHHHhCCCCcEEEEEeccccCcCCCCccCCCeeEeCCCcEEEEecCCCCCCcChhhhhhhHHHHHHH
Confidence 358999999999999999997 99988853222 1211222 3577775332100 0
Q ss_pred h----hh-hcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh----h--------------h--HH---HHHH
Q 006050 306 F----KT-SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR----E--------------Y--FD---RAKL 357 (663)
Q Consensus 306 f----k~-~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~----~--------------y--f~---r~k~ 357 (663)
+ +. ..++|+||+|+.. +.++...+... . +.++++.+|.... . | +. ..+.
T Consensus 104 l~~~~~~~~~~~DvIH~h~~~-~~~~~~~~~~~-~-~~p~V~t~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (439)
T TIGR02472 104 LLQHLRQQGHLPDLIHAHYAD-AGYVGARLSRL-L-GVPLIFTGHSLGREKRRRLLAAGLKPQQIEKQYNISRRIEAEEE 180 (439)
T ss_pred HHHHHHHcCCCCCEEEEcchh-HHHHHHHHHHH-h-CCCEEEecccccchhhhhcccCCCChhhhhhhcchHHHHHHHHH
Confidence 1 11 1269999999743 22333223221 1 2234544553110 0 0 00 1234
Q ss_pred HHhcCCEEEEecHHHHHHHHHHhHh-hcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHH
Q 006050 358 VLDRVKLLVFLSESQTKQWLTWCEE-EKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKE 436 (663)
Q Consensus 358 vl~rvk~lIflSes~~k~w~~~~~~-~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~e 436 (663)
.+.+++.+|++|...... .... .+++ +.++.+||+|++.+.+.... ..+ .+...++. +++
T Consensus 181 ~~~~ad~ii~~s~~~~~~---~~~~~~~~~-~~ki~vIpnGvd~~~f~~~~----------~~~----~~~~~~~~-~~~ 241 (439)
T TIGR02472 181 TLAHASLVITSTHQEIEE---QYALYDSYQ-PERMQVIPPGVDLSRFYPPQ----------SSE----ETSEIDNL-LAP 241 (439)
T ss_pred HHHhCCEEEECCHHHHHH---HHHhccCCC-ccceEEECCCcChhhcCCCC----------ccc----cchhHHHH-HHh
Confidence 567889999887532211 1111 1333 35789999999876432110 000 00112222 344
Q ss_pred hCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccccccccc
Q 006050 437 MGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSN 516 (663)
Q Consensus 437 lGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~ 516 (663)
++.++++++|+++||+.+.||+++||+|++.+....+..
T Consensus 242 ~~~~~~~~~i~~vGrl~~~Kg~~~li~A~~~l~~~~~~~----------------------------------------- 280 (439)
T TIGR02472 242 FLKDPEKPPILAISRPDRRKNIPSLVEAYGRSPKLQEMA----------------------------------------- 280 (439)
T ss_pred hccccCCcEEEEEcCCcccCCHHHHHHHHHhChhhhhhc-----------------------------------------
Confidence 566777889999999999999999999998752110000
Q ss_pred ccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCC-----hhHH
Q 006050 517 ELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNK-----VPYV 591 (663)
Q Consensus 517 ~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~-----~~y~ 591 (663)
++.+++|. |+..+. .+|.
T Consensus 281 --------------------------------------------------------~l~li~G~-g~~~~~l~~~~~~~~ 303 (439)
T TIGR02472 281 --------------------------------------------------------NLVLVLGC-RDDIRKMESQQREVL 303 (439)
T ss_pred --------------------------------------------------------cEEEEeCC-ccccccccHHHHHHH
Confidence 01233454 221111 1232
Q ss_pred HHHHHHHHHhCCCCCcEEEcCCc--chHHHHHHHc----cEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 592 KEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAA----DVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 592 k~~L~~l~~~~gLs~~V~~~G~~--~dv~~lysaA----DV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
++ +..+++++++.++|.|+|+. ++++.+|++| |+||+||. .|+||++++||||||+|||+|+.+++.+
T Consensus 304 ~~-~~~~~~~~~l~~~V~f~g~~~~~~~~~~~~~a~~~~Dv~v~pS~--~E~fg~~~lEAma~G~PvV~s~~gg~~e 377 (439)
T TIGR02472 304 QK-VLLLIDRYDLYGKVAYPKHHRPDDVPELYRLAARSRGIFVNPAL--TEPFGLTLLEAAACGLPIVATDDGGPRD 377 (439)
T ss_pred HH-HHHHHHHcCCCceEEecCCCCHHHHHHHHHHHhhcCCEEecccc--cCCcccHHHHHHHhCCCEEEeCCCCcHH
Confidence 22 56678899999999999974 5899999988 99999999 9999999999999999999999998764
No 25
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.92 E-value=2.7e-23 Score=210.67 Aligned_cols=278 Identities=19% Similarity=0.204 Sum_probs=186.2
Q ss_pred CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChh-HHhcCCeEEEeCCCCc--------------hhh-------hhc-
Q 006050 254 MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP-ELARRKIKVLEDRGEP--------------SFK-------TSM- 310 (663)
Q Consensus 254 ~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~-eL~~~gIkVl~~~~~~--------------sfk-------~~~- 310 (663)
.||+++++.+||.+|.+.||+|.+++....++... .....++.+....... .+. ...
T Consensus 20 ~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (398)
T cd03800 20 TGGQNVYVLELARALARLGHEVDIFTRRIDDALPPIVELAPGVRVVRVPAGPAEYLPKEELWPYLDEFADDLLRFLRREG 99 (398)
T ss_pred CCceeehHHHHHHHHhccCceEEEEEecCCcccCCccccccceEEEecccccccCCChhhcchhHHHHHHHHHHHHHhcC
Confidence 68999999999999999999999987544433221 2234566665322100 000 122
Q ss_pred -CccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhh---------------hHHHHHHHHhcCCEEEEecHHHHH
Q 006050 311 -KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---------------YFDRAKLVLDRVKLLVFLSESQTK 374 (663)
Q Consensus 311 -k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~---------------yf~r~k~vl~rvk~lIflSes~~k 374 (663)
++|+||++....+ ++...+.... +.+++++.|..... .+.....++..++.++++|+...+
T Consensus 100 ~~~Div~~~~~~~~-~~~~~~~~~~--~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~~ 176 (398)
T cd03800 100 GRPDLIHAHYWDSG-LVALLLARRL--GIPLVHTFHSLGAVKRRHLGAADTYEPARRIEAEERLLRAADRVIASTPQEAE 176 (398)
T ss_pred CCccEEEEecCccc-hHHHHHHhhc--CCceEEEeecccccCCcccccccccchhhhhhHHHHHHhhCCEEEEcCHHHHH
Confidence 8999999864332 2222222221 23455555542110 011123456789999999987766
Q ss_pred HHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCC
Q 006050 375 QWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINP 454 (663)
Q Consensus 375 ~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p 454 (663)
.... .......+..++|+|++.+.+. +... ....+++++.+.++.+|+++|++.+
T Consensus 177 ~~~~----~~~~~~~~~~vi~ng~~~~~~~--------------~~~~-------~~~~~~~~~~~~~~~~i~~~gr~~~ 231 (398)
T cd03800 177 ELYS----LYGAYPRRIRVVPPGVDLERFT--------------PYGR-------AEARRARLLRDPDKPRILAVGRLDP 231 (398)
T ss_pred HHHH----HccccccccEEECCCCCcccee--------------cccc-------hhhHHHhhccCCCCcEEEEEccccc
Confidence 5332 2222223478999998754321 1100 0112556777888899999999999
Q ss_pred CCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCccccc
Q 006050 455 GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRK 534 (663)
Q Consensus 455 ~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k 534 (663)
.||++.+++|+..+.++.++.
T Consensus 232 ~k~~~~ll~a~~~l~~~~~~~----------------------------------------------------------- 252 (398)
T cd03800 232 RKGIDTLIRAYAELPELRERA----------------------------------------------------------- 252 (398)
T ss_pred ccCHHHHHHHHHHHHHhCCCe-----------------------------------------------------------
Confidence 999999999999997665442
Q ss_pred ccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCc
Q 006050 535 NLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPAT 614 (663)
Q Consensus 535 ~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~ 614 (663)
-++++|.... .+. ++..+.++.+++++++.++|.|+|..
T Consensus 253 ---------------------------------------~l~i~G~~~~-~~~-~~~~~~~~~~~~~~~~~~~v~~~g~~ 291 (398)
T cd03800 253 ---------------------------------------NLVIVGGPRD-DIL-AMDEEELRELARELGVIDRVDFPGRV 291 (398)
T ss_pred ---------------------------------------EEEEEECCCC-cch-hhhhHHHHHHHHhcCCCceEEEeccC
Confidence 0256675332 112 22234478899999999999999997
Q ss_pred c--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 615 T--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 615 ~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
+ ++..+|++||++++||. .|+||++++||||||+|||+++.++..
T Consensus 292 ~~~~~~~~~~~adi~l~ps~--~e~~~~~l~Ea~a~G~Pvi~s~~~~~~ 338 (398)
T cd03800 292 SREDLPALYRAADVFVNPAL--YEPFGLTALEAMACGLPVVATAVGGPR 338 (398)
T ss_pred CHHHHHHHHHhCCEEEeccc--ccccCcHHHHHHhcCCCEEECCCCCHH
Confidence 6 89999999999999998 999999999999999999999988764
No 26
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=99.92 E-value=1.1e-22 Score=208.00 Aligned_cols=279 Identities=16% Similarity=0.208 Sum_probs=182.8
Q ss_pred CeEEEEeCCCC---CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCc----------h----
Q 006050 243 RKFILIFHELS---MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----------S---- 305 (663)
Q Consensus 243 kKILLI~heLs---~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~----------s---- 305 (663)
|||++|.+... .||++..+.+||++|.+. ++|.+++... +. ....++++...+... .
T Consensus 1 mkI~~i~~~~~p~~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (388)
T TIGR02149 1 MKVTVLTREYPPNVYGGAGVHVEELTRELARL-MDVDVRCFGD-QR----FDSEGLTVKGYRPWSELKEANKALGTFSVD 74 (388)
T ss_pred CeeEEEecccCccccccHhHHHHHHHHHHHHh-cCeeEEcCCC-ch----hcCCCeEEEEecChhhccchhhhhhhhhHH
Confidence 58999988775 389999999999999886 6676666432 21 234577765322100 0
Q ss_pred h---hhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh-------------hhHH-HHHHHHhcCCEEEEe
Q 006050 306 F---KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-------------EYFD-RAKLVLDRVKLLVFL 368 (663)
Q Consensus 306 f---k~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~-------------~yf~-r~k~vl~rvk~lIfl 368 (663)
+ ....++|+||+|+...+ ++....... .+.++++.+|.... ..+. ..+..+..++.++++
T Consensus 75 ~~~~~~~~~~divh~~~~~~~-~~~~~~~~~--~~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~ 151 (388)
T TIGR02149 75 LAMANDPVDADVVHSHTWYTF-LAGHLAKKL--YDKPLVVTAHSLEPLRPWKEEQLGGGYKLSSWAEKTAIEAADRVIAV 151 (388)
T ss_pred HHHhhCCCCCCeEeecchhhh-hHHHHHHHh--cCCCEEEEeecccccccccccccccchhHHHHHHHHHHhhCCEEEEc
Confidence 0 11236999999874322 121111111 13345666665310 0011 123456788999999
Q ss_pred cHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEE
Q 006050 369 SESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLS 448 (663)
Q Consensus 369 Ses~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~ 448 (663)
|+...+....+. .++. ..++.++|+|++.+.+ .+. .+...++++|++++.++|++
T Consensus 152 S~~~~~~~~~~~--~~~~-~~~i~vi~ng~~~~~~--------------~~~--------~~~~~~~~~~~~~~~~~i~~ 206 (388)
T TIGR02149 152 SGGMREDILKYY--PDLD-PEKVHVIYNGIDTKEY--------------KPD--------DGNVVLDRYGIDRSRPYILF 206 (388)
T ss_pred cHHHHHHHHHHc--CCCC-cceEEEecCCCChhhc--------------CCC--------chHHHHHHhCCCCCceEEEE
Confidence 998776643321 1222 2457899999875432 111 12346788999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccccccccccccccccccccc
Q 006050 449 LSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQL 528 (663)
Q Consensus 449 VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 528 (663)
+|++.+.||++.|++|++.+. ++. +
T Consensus 207 ~Grl~~~Kg~~~li~a~~~l~---~~~-----~----------------------------------------------- 231 (388)
T TIGR02149 207 VGRITRQKGVPHLLDAVHYIP---KDV-----Q----------------------------------------------- 231 (388)
T ss_pred EcccccccCHHHHHHHHHHHh---hcC-----c-----------------------------------------------
Confidence 999999999999999999872 111 0
Q ss_pred CcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCC-Cc
Q 006050 529 NEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS-KA 607 (663)
Q Consensus 529 ~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs-~~ 607 (663)
.+++|..+. ..++ .+.++.+++.++.. ++
T Consensus 232 ----------------------------------------------l~i~g~g~~---~~~~-~~~~~~~~~~~~~~~~~ 261 (388)
T TIGR02149 232 ----------------------------------------------VVLCAGAPD---TPEV-AEEVRQAVALLDRNRTG 261 (388)
T ss_pred ----------------------------------------------EEEEeCCCC---cHHH-HHHHHHHHHHhccccCc
Confidence 144554222 2233 34466677666653 45
Q ss_pred EEEc-CCc--chHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 608 MLWT-PAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 608 V~~~-G~~--~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
|.|. |.. .++..+|++||++|+||. .|+||++++||||||+|||+|+.++..+
T Consensus 262 v~~~~~~~~~~~~~~~~~~aDv~v~ps~--~e~~g~~~lEA~a~G~PvI~s~~~~~~e 317 (388)
T TIGR02149 262 IIWINKMLPKEELVELLSNAEVFVCPSI--YEPLGIVNLEAMACGTPVVASATGGIPE 317 (388)
T ss_pred eEEecCCCCHHHHHHHHHhCCEEEeCCc--cCCCChHHHHHHHcCCCEEEeCCCCHHH
Confidence 7765 444 489999999999999999 9999999999999999999999998754
No 27
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=99.92 E-value=9.6e-23 Score=214.14 Aligned_cols=276 Identities=18% Similarity=0.262 Sum_probs=186.0
Q ss_pred CeEEEEeCC-C-----CCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCCh-hHHhcCCeEE--EeCCC-C---------
Q 006050 243 RKFILIFHE-L-----SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-PELARRKIKV--LEDRG-E--------- 303 (663)
Q Consensus 243 kKILLI~he-L-----s~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~-~eL~~~gIkV--l~~~~-~--------- 303 (663)
.||+++..+ + ..||+|.++.++|+.|.. +|++++....| |. .+....|+.+ +.... .
T Consensus 3 ~~~~~~~~~~~~~p~~~~g~ve~~~~~~~~~l~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (380)
T PRK15484 3 DKIIFTVTPIFSIPPRGAAAVETWIYQVAKRTSI---PNRIACIKNPG-YPEYTKVNDNCDIHYIGFSRIYKRLFQKWTR 78 (380)
T ss_pred ceEEEEeccCCCCCCccccHHHHHHHHhhhhccC---CeeEEEecCCC-CCchhhccCCCceEEEEeccccchhhhhhhc
Confidence 467666443 3 358999999999999943 89999887664 33 3344444443 32211 0
Q ss_pred ---c--hh-----h---hhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHHHHHHhcCCEEEEecH
Q 006050 304 ---P--SF-----K---TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSE 370 (663)
Q Consensus 304 ---~--sf-----k---~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~k~vl~rvk~lIflSe 370 (663)
. +. . ...++|+|+++... .++..+....| ..+++.++|.. |. ...+.+...+|++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~vi~v~~~~--~~~~~~~~~~~--~~~~v~~~h~~----~~--~~~~~~~~~ii~~S~ 148 (380)
T PRK15484 79 LDPLPYSQRILNIAHKFTITKDSVIVIHNSM--KLYRQIRERAP--QAKLVMHMHNA----FE--PELLDKNAKIIVPSQ 148 (380)
T ss_pred cCchhHHHHHHHHHHhcCCCCCcEEEEeCcH--HhHHHHHhhCC--CCCEEEEEecc----cC--hhHhccCCEEEEcCH
Confidence 0 00 0 12458999988643 22322323333 34566666753 21 123556788999999
Q ss_pred HHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEe
Q 006050 371 SQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLS 450 (663)
Q Consensus 371 s~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VG 450 (663)
...+.+... .. ..++.+||+|++.+.+. +.. +..+++++|+++++.+|+++|
T Consensus 149 ~~~~~~~~~-----~~-~~~i~vIpngvd~~~~~--------------~~~--------~~~~~~~~~~~~~~~~il~~G 200 (380)
T PRK15484 149 FLKKFYEER-----LP-NADISIVPNGFCLETYQ--------------SNP--------QPNLRQQLNISPDETVLLYAG 200 (380)
T ss_pred HHHHHHHhh-----CC-CCCEEEecCCCCHHHcC--------------Ccc--------hHHHHHHhCCCCCCeEEEEec
Confidence 877664321 22 23578999999754321 111 123567889988889999999
Q ss_pred cCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCc
Q 006050 451 SINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (663)
Q Consensus 451 ri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (663)
++.+.||++.|++|++.+.++.|+.
T Consensus 201 rl~~~Kg~~~Li~A~~~l~~~~p~~------------------------------------------------------- 225 (380)
T PRK15484 201 RISPDKGILLLMQAFEKLATAHSNL------------------------------------------------------- 225 (380)
T ss_pred cCccccCHHHHHHHHHHHHHhCCCe-------------------------------------------------------
Confidence 9999999999999999998776652
Q ss_pred ccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCC--CChhHHHHHHHHHHHhCCCCCcE
Q 006050 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS--NKVPYVKEILEFLSQHSNLSKAM 608 (663)
Q Consensus 531 p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~--n~~~y~k~~L~~l~~~~gLs~~V 608 (663)
-++++|+..... +...| .+.++.+++.++ .+|
T Consensus 226 -------------------------------------------~lvivG~g~~~~~~~~~~~-~~~l~~~~~~l~--~~v 259 (380)
T PRK15484 226 -------------------------------------------KLVVVGDPTASSKGEKAAY-QKKVLEAAKRIG--DRC 259 (380)
T ss_pred -------------------------------------------EEEEEeCCccccccchhHH-HHHHHHHHHhcC--CcE
Confidence 026677532111 12345 334777777665 589
Q ss_pred EEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 609 LWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 609 ~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.|+|..+ ++..+|++||++|+||. ..|+||++++||||||+|||+|+.+++.+
T Consensus 260 ~~~G~~~~~~l~~~~~~aDv~v~pS~-~~E~f~~~~lEAma~G~PVI~s~~gg~~E 314 (380)
T PRK15484 260 IMLGGQPPEKMHNYYPLADLVVVPSQ-VEEAFCMVAVEAMAAGKPVLASTKGGITE 314 (380)
T ss_pred EEeCCCCHHHHHHHHHhCCEEEeCCC-CccccccHHHHHHHcCCCEEEeCCCCcHh
Confidence 9999975 89999999999999996 24999999999999999999999998764
No 28
>PLN02939 transferase, transferring glycosyl groups
Probab=99.92 E-value=1.7e-22 Score=234.50 Aligned_cols=308 Identities=16% Similarity=0.169 Sum_probs=205.7
Q ss_pred CCeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCCh-hHH--------------------------
Q 006050 242 SRKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLM-PEL-------------------------- 290 (663)
Q Consensus 242 ~kKILLI~heLs----~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~-~eL-------------------------- 290 (663)
++|||+|..|.. .||-.-++-.|..+|.+.||+|.+++. ..+.+. .+.
T Consensus 481 ~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP-~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~~ 559 (977)
T PLN02939 481 GLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLP-KYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWTG 559 (977)
T ss_pred CCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeC-CCcccChhhhhcccccceEEEEeecCceeEEEEEEE
Confidence 489999999985 477777888999999999999998874 333332 110
Q ss_pred hcCCeEEE--eCCC--------------Cc--hh--------h----hhcCccEEEECchhhHH---H-HHHHHHhCCCC
Q 006050 291 ARRKIKVL--EDRG--------------EP--SF--------K----TSMKADLVIAGSAVCAT---W-IDQYITRFPAG 336 (663)
Q Consensus 291 ~~~gIkVl--~~~~--------------~~--sf--------k----~~~k~DLVianSav~as---w-i~~yi~~~pa~ 336 (663)
...||+++ +... +. .| . ...+||+||+|-.-++. + ...|. .....
T Consensus 560 ~~~GV~vyfId~~~~~~fF~R~~iYg~~Dn~~RF~~FsrAaLe~~~~~~~~PDIIH~HDW~TaLV~pll~~~y~-~~~~~ 638 (977)
T PLN02939 560 TVEGLPVYFIEPQHPSKFFWRAQYYGEHDDFKRFSYFSRAALELLYQSGKKPDIIHCHDWQTAFVAPLYWDLYA-PKGFN 638 (977)
T ss_pred EECCeeEEEEecCCchhccCCCCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHHHHh-hccCC
Confidence 01244443 2100 00 01 0 11479999999643332 1 11221 11223
Q ss_pred CccEEEEEeehh--h--------------hhHH---H-----------HHHHHhcCCEEEEecHHHHHHHHHHhHhhcc-
Q 006050 337 GSQVVWWIMENR--R--------------EYFD---R-----------AKLVLDRVKLLVFLSESQTKQWLTWCEEEKL- 385 (663)
Q Consensus 337 ~~~vvwwi~E~r--~--------------~yf~---r-----------~k~vl~rvk~lIflSes~~k~w~~~~~~~~i- 385 (663)
..++++.||-.. + .+|. + -+.-+.+++.++++|....+..++. ...++
T Consensus 639 ~~ktVfTIHNl~yQG~f~~~~l~~lGL~~~~l~~~d~le~~~~~~iN~LK~GIv~AD~VtTVSptYA~EI~te-~G~GL~ 717 (977)
T PLN02939 639 SARICFTCHNFEYQGTAPASDLASCGLDVHQLDRPDRMQDNAHGRINVVKGAIVYSNIVTTVSPTYAQEVRSE-GGRGLQ 717 (977)
T ss_pred CCcEEEEeCCCcCCCcCCHHHHHHcCCCHHHccChhhhhhccCCchHHHHHHHHhCCeeEeeeHHHHHHHHHH-hccchH
Confidence 345677777532 1 1110 0 0112345789999999888776541 11111
Q ss_pred ---c-CCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCC---CCEEEEEEecCCCCCCH
Q 006050 386 ---K-LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD---QDMLVLSLSSINPGKGQ 458 (663)
Q Consensus 386 ---~-l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~---~~~lVl~VGri~p~KGq 458 (663)
. ...++.+|||||+.+.+..+. ...-...|+.+.+ +.+...+..+|+++|++. +.++|++|||+.++||+
T Consensus 718 ~~L~~~~~Kl~gIlNGID~e~wnPat--D~~L~~~Ys~~dl-~GK~~nK~aLRkelGL~~~d~d~pLIg~VGRL~~QKGi 794 (977)
T PLN02939 718 DTLKFHSKKFVGILNGIDTDTWNPST--DRFLKVQYNANDL-QGKAANKAALRKQLGLSSADASQPLVGCITRLVPQKGV 794 (977)
T ss_pred HHhccccCCceEEecceehhhcCCcc--ccccccccChhhh-hhhhhhhHHHHHHhCCCcccccceEEEEeecCCcccCh
Confidence 1 134678999999987543221 1122345666665 344555678999999985 46899999999999999
Q ss_pred HHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCC
Q 006050 459 LLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLS 538 (663)
Q Consensus 459 dlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~ 538 (663)
++|++|+..+.+. ..
T Consensus 795 DlLleA~~~Ll~~--dv--------------------------------------------------------------- 809 (977)
T PLN02939 795 HLIRHAIYKTAEL--GG--------------------------------------------------------------- 809 (977)
T ss_pred HHHHHHHHHHhhc--CC---------------------------------------------------------------
Confidence 9999999887531 11
Q ss_pred CCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcch--
Q 006050 539 PSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR-- 616 (663)
Q Consensus 539 ~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~d-- 616 (663)
-++++|+ |+ ...| ++.++.+++++++.++|.|+|..++
T Consensus 810 -----------------------------------qLVIvGd-Gp---~~~~-e~eL~~La~~l~l~drV~FlG~~de~l 849 (977)
T PLN02939 810 -----------------------------------QFVLLGS-SP---VPHI-QREFEGIADQFQSNNNIRLILKYDEAL 849 (977)
T ss_pred -----------------------------------EEEEEeC-CC---cHHH-HHHHHHHHHHcCCCCeEEEEeccCHHH
Confidence 0267786 32 1223 5558899999999999999998885
Q ss_pred HHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 617 v~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
...+|++||+||+||+ .|+||++++||||||+|+|++++||+..
T Consensus 850 ah~IYAaADIFLmPSr--~EPfGLvqLEAMAyGtPPVVs~vGGL~D 893 (977)
T PLN02939 850 SHSIYAASDMFIIPSM--FEPCGLTQMIAMRYGSVPIVRKTGGLND 893 (977)
T ss_pred HHHHHHhCCEEEECCC--ccCCcHHHHHHHHCCCCEEEecCCCCcc
Confidence 3589999999999999 9999999999999999999999999863
No 29
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.92 E-value=2e-23 Score=217.93 Aligned_cols=278 Identities=15% Similarity=0.193 Sum_probs=176.7
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCC-----------chh------
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE-----------PSF------ 306 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~-----------~sf------ 306 (663)
|||||...+. -..-+||++|.++||+|++++......... |++++..... ..+
T Consensus 1 ~il~~~~~~p-----~~~~~la~~L~~~G~~v~~~~~~~~~~~~~-----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (396)
T cd03818 1 RILFVHQNFP-----GQFRHLAPALAAQGHEVVFLTEPNAAPPPG-----GVRVVRYRPPRGPTSGTHPYLREFEEAVLR 70 (396)
T ss_pred CEEEECCCCc-----hhHHHHHHHHHHCCCEEEEEecCCCCCCCC-----CeeEEEecCCCCCCCCCCccchhHHHHHHH
Confidence 5677755543 346789999999999999998665443221 6776532211 000
Q ss_pred ------------hhhcCccEEEECchhhHHHHHHHHHhCCCCCccEE---EEEee-hh----------hh---hHHHH--
Q 006050 307 ------------KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVV---WWIME-NR----------RE---YFDRA-- 355 (663)
Q Consensus 307 ------------k~~~k~DLVianSav~aswi~~yi~~~pa~~~~vv---wwi~E-~r----------~~---yf~r~-- 355 (663)
....++|+||+|+.......- -..+|. .+.+. ||... .. .. ...+.
T Consensus 71 ~~~~~~~~~~~~~~~~~pdvi~~h~~~~~~~~l--~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (396)
T cd03818 71 GQAVARALLALRAKGFRPDVIVAHPGWGETLFL--KDVWPD-APLIGYFEFYYRAEGADVGFDPEFPPSLDDALRLRNRN 147 (396)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEECCccchhhhH--HHhCCC-CCEEEEEeeeecCCCCCCCCCCCCCCchhHHHHHHHhh
Confidence 122479999999764322111 012221 11121 11111 00 00 11111
Q ss_pred ---HHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHH
Q 006050 356 ---KLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDS 432 (663)
Q Consensus 356 ---k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~ 432 (663)
...+..++.+|++|+.+.+.+.... ..++.|||+|++.+.+. +... ....
T Consensus 148 ~~~~~~~~~ad~vi~~s~~~~~~~~~~~-------~~ki~vI~ngvd~~~f~--------------~~~~------~~~~ 200 (396)
T cd03818 148 ALILLALAQADAGVSPTRWQRSTFPAEL-------RSRISVIHDGIDTDRLR--------------PDPQ------ARLR 200 (396)
T ss_pred hHhHHHHHhCCEEECCCHHHHhhCcHhh-------ccceEEeCCCccccccC--------------CCch------hhhc
Confidence 1346789999999998877643221 24688999999765321 1110 0011
Q ss_pred HHHHhCCCCCCEEEEEEec-CCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccc
Q 006050 433 VRKEMGLTDQDMLVLSLSS-INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDV 511 (663)
Q Consensus 433 vR~elGL~~~~~lVl~VGr-i~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~ 511 (663)
.+...++++++.+|+++|| +.+.||++.|++|+..+.++.|+.
T Consensus 201 ~~~~~~~~~~~~~i~~vgR~l~~~Kg~~~ll~a~~~l~~~~~~~------------------------------------ 244 (396)
T cd03818 201 LPNGRVLTPGDEVITFVARNLEPYRGFHVFMRALPRLLRARPDA------------------------------------ 244 (396)
T ss_pred ccccccCCCCCeEEEEECCCcccccCHHHHHHHHHHHHHHCCCc------------------------------------
Confidence 2334456778899999997 999999999999999997766653
Q ss_pred cccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCC-----CC
Q 006050 512 GLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSK-----SN 586 (663)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~-----~n 586 (663)
+ ++++|..+.. .+
T Consensus 245 -------------------------------------------------~-------------lvivG~~~~~~g~~~~~ 262 (396)
T cd03818 245 -------------------------------------------------R-------------VVIVGGDGVSYGAPPPD 262 (396)
T ss_pred -------------------------------------------------E-------------EEEEcCCCcccCCCCCC
Confidence 0 2666753210 01
Q ss_pred ChhHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 587 KVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 587 ~~~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
...|.+++++.+...++ .++|+|+|..+ +++.+|++||++|+||. .|+||++++||||||+|||+|+.+++.+
T Consensus 263 ~~~~~~~~~~~~~~~~~-~~~V~f~G~v~~~~~~~~l~~adv~v~~s~--~e~~~~~llEAmA~G~PVIas~~~g~~e 337 (396)
T cd03818 263 GESWKQHMLDELGGRLD-LSRVHFLGRVPYDQYLALLQVSDVHVYLTY--PFVLSWSLLEAMACGCLVVGSDTAPVRE 337 (396)
T ss_pred cccHHHHHHHHhhcccC-cceEEEeCCCCHHHHHHHHHhCcEEEEcCc--ccccchHHHHHHHCCCCEEEcCCCCchh
Confidence 12244444444443333 47899999986 89999999999999999 9999999999999999999999998764
No 30
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.92 E-value=5.9e-23 Score=218.90 Aligned_cols=304 Identities=17% Similarity=0.154 Sum_probs=192.8
Q ss_pred eEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHH--------------------------hcC
Q 006050 244 KFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL--------------------------ARR 293 (663)
Q Consensus 244 KILLI~heLs----~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL--------------------------~~~ 293 (663)
|||+|+.|.. .||...++-.|+++|.++||+|.+++... +...... ...
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKY-GRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVD 79 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCC-cchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeC
Confidence 6899999864 58999999999999999999999987543 3222110 113
Q ss_pred CeEEEeCCC-------C------c-------h---h-------hh--hcCccEEEECchhhHHHHHHHHHhC----CCCC
Q 006050 294 KIKVLEDRG-------E------P-------S---F-------KT--SMKADLVIAGSAVCATWIDQYITRF----PAGG 337 (663)
Q Consensus 294 gIkVl~~~~-------~------~-------s---f-------k~--~~k~DLVianSav~aswi~~yi~~~----pa~~ 337 (663)
|++++-... . . . | .. ..++|+||+|..-++ .+..++... ....
T Consensus 80 gv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~pDviH~hd~~t~-~~~~~l~~~~~~~~~~~ 158 (476)
T cd03791 80 GVPVYFLDNPDYFDRPGLYDDSGYDYEDNAERFALFSRAALELLRRLGWKPDIIHCHDWHTG-LVPALLKEKYADPFFKN 158 (476)
T ss_pred CceEEEEcChHHcCCCCCCCccCCCCccHHHHHHHHHHHHHHHHHhcCCCCcEEEECchHHH-HHHHHHHHhhccccCCC
Confidence 566541110 0 0 0 0 01 258999999964332 222233221 1124
Q ss_pred ccEEEEEeehhhh-----h-----------------------HHHHHHHHhcCCEEEEecHHHHHHHHHH-----hHhhc
Q 006050 338 SQVVWWIMENRRE-----Y-----------------------FDRAKLVLDRVKLLVFLSESQTKQWLTW-----CEEEK 384 (663)
Q Consensus 338 ~~vvwwi~E~r~~-----y-----------------------f~r~k~vl~rvk~lIflSes~~k~w~~~-----~~~~~ 384 (663)
.++++.+|..... + +...+..+..++.++++|....+...+. .....
T Consensus 159 ~~~v~tiH~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~v~~vS~~~~~~i~~~~~~~gl~~~~ 238 (476)
T cd03791 159 IKTVFTIHNLAYQGVFPLEALEDLGLPWEELFHIDGLEFYGQVNFLKAGIVYADAVTTVSPTYAREILTPEFGEGLDGLL 238 (476)
T ss_pred CCEEEEeCCCCCCCCCCHHHHHHcCCCccchhhhcccccCCcccHHHHHHHhcCcCeecCHhHHHHhCCCCCCcchHHHH
Confidence 5678888853110 0 0112334667899999998776653220 00000
Q ss_pred ccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCC--CCCEEEEEEecCCCCCCHHHHH
Q 006050 385 LKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLT--DQDMLVLSLSSINPGKGQLLLV 462 (663)
Q Consensus 385 i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~--~~~~lVl~VGri~p~KGqdlLL 462 (663)
.....++.+||||++.+.+.....+ .+ ...++.+.. +.+...+..+++++|++ ++.++|+++||+.++||+++|+
T Consensus 239 ~~~~~ki~~I~NGid~~~~~p~~~~-~~-~~~~~~~~~-~~~~~~k~~l~~~~g~~~~~~~~~i~~vGrl~~~Kg~~~li 315 (476)
T cd03791 239 RARAGKLSGILNGIDYDVWNPATDP-HL-PANYSADDL-EGKAENKAALQEELGLPVDPDAPLFGFVGRLTEQKGIDLLL 315 (476)
T ss_pred HhccCCeEEEeCCCcCcccCccccc-hh-hhcCCcccc-ccHHHHHHHHHHHcCCCcCCCCCEEEEEeeccccccHHHHH
Confidence 0113478999999986543211100 00 000111111 12233456789999995 7889999999999999999999
Q ss_pred HHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcc
Q 006050 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (663)
Q Consensus 463 eA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f 542 (663)
+|+..+.++. .
T Consensus 316 ~a~~~l~~~~--~------------------------------------------------------------------- 326 (476)
T cd03791 316 EALPELLELG--G------------------------------------------------------------------- 326 (476)
T ss_pred HHHHHHHHcC--c-------------------------------------------------------------------
Confidence 9999885431 1
Q ss_pred cccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEE-cCCcc-hHHHH
Q 006050 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW-TPATT-RVASL 620 (663)
Q Consensus 543 ~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~-~G~~~-dv~~l 620 (663)
-++++|. |. .++ ++.++.+++++ .++|.+ .|... .+..+
T Consensus 327 -------------------------------~lvi~G~-g~----~~~-~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~ 367 (476)
T cd03791 327 -------------------------------QLVILGS-GD----PEY-EEALRELAARY--PGRVAVLIGYDEALAHLI 367 (476)
T ss_pred -------------------------------EEEEEec-CC----HHH-HHHHHHHHHhC--CCcEEEEEeCCHHHHHHH
Confidence 0266776 32 123 45577777765 566765 55554 46789
Q ss_pred HHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 621 YSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 621 ysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
|++||++++||. .|+||++++||||||+|||+++++++.+
T Consensus 368 ~~~aDv~l~pS~--~E~~gl~~lEAma~G~pvI~~~~gg~~e 407 (476)
T cd03791 368 YAGADFFLMPSR--FEPCGLTQMYAMRYGTVPIVRATGGLAD 407 (476)
T ss_pred HHhCCEEECCCC--CCCCcHHHHHHhhCCCCCEECcCCCccc
Confidence 999999999999 9999999999999999999999999875
No 31
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.91 E-value=6.3e-22 Score=196.88 Aligned_cols=276 Identities=21% Similarity=0.218 Sum_probs=183.9
Q ss_pred eEEEEeCCCC--CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCC---------Cchh-----h
Q 006050 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG---------EPSF-----K 307 (663)
Q Consensus 244 KILLI~heLs--~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~---------~~sf-----k 307 (663)
|||+|++... .||++..+.+|+.+|.+.||+|.+++...... ..+....++++..... ...+ .
T Consensus 1 kil~i~~~~~p~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (357)
T cd03795 1 RVLHVGKFYPPDRGGIEQVIRDLAEGLAARGIEVAVLCASPEPK-GRDEERNGHRVIRAPSLLNVASTPFSPSFFKQLKK 79 (357)
T ss_pred CeeEecCCCCCCCCcHHHHHHHHHHHHHhCCCceEEEecCCCCc-chhhhccCceEEEeecccccccccccHHHHHHHHh
Confidence 6888887765 68999999999999999999999988654332 3333334444432211 0111 1
Q ss_pred hhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh-------hhHHHHHHHHhcCCEEEEecHHHHHHHHHHh
Q 006050 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-------EYFDRAKLVLDRVKLLVFLSESQTKQWLTWC 380 (663)
Q Consensus 308 ~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~-------~yf~r~k~vl~rvk~lIflSes~~k~w~~~~ 380 (663)
...++|+||.++......+...+.. ...+.++++|.... .|....+.++..++.++++|+...+...
T Consensus 80 ~~~~~Dii~~~~~~~~~~~~~~~~~---~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~s~~~~~~~~--- 153 (357)
T cd03795 80 LAKKADVIHLHFPNPLADLALLLLP---RKKPVVVHWHSDIVKQKLLLKLYRPLQRRFLRRADAIVATSPNYAETSP--- 153 (357)
T ss_pred cCCCCCEEEEecCcchHHHHHHHhc---cCceEEEEEcChhhccchhhhhhhHHHHHHHHhcCEEEeCcHHHHHHHH---
Confidence 2467999998864332211111111 23345555564211 1111224467789999999987665422
Q ss_pred HhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHH
Q 006050 381 EEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLL 460 (663)
Q Consensus 381 ~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdl 460 (663)
... ....+..++|+|++...+. +... .+. .+.....+.+.|+++|++.+.||++.
T Consensus 154 -~~~-~~~~~~~~i~~gi~~~~~~--------------~~~~------~~~---~~~~~~~~~~~i~~~G~~~~~K~~~~ 208 (357)
T cd03795 154 -VLR-RFRDKVRVIPLGLDPARYP--------------RPDA------LEE---AIWRRAAGRPFFLFVGRLVYYKGLDV 208 (357)
T ss_pred -Hhc-CCccceEEecCCCChhhcC--------------Ccch------hhh---HhhcCCCCCcEEEEecccccccCHHH
Confidence 111 1124688999998754211 1100 000 23345667889999999999999999
Q ss_pred HHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCC
Q 006050 461 LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPS 540 (663)
Q Consensus 461 LLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~ 540 (663)
+++|+..+. +.
T Consensus 209 li~a~~~l~----~~----------------------------------------------------------------- 219 (357)
T cd03795 209 LLEAAAALP----DA----------------------------------------------------------------- 219 (357)
T ss_pred HHHHHHhcc----Cc-----------------------------------------------------------------
Confidence 999999873 11
Q ss_pred cccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc--hHH
Q 006050 541 LFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVA 618 (663)
Q Consensus 541 ~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~ 618 (663)
-++++|. |+ .++.++.++++.++.++|.|+|+.+ ++.
T Consensus 220 ---------------------------------~l~i~G~-g~-------~~~~~~~~~~~~~~~~~V~~~g~v~~~~~~ 258 (357)
T cd03795 220 ---------------------------------PLVIVGE-GP-------LEAELEALAAALGLLDRVRFLGRLDDEEKA 258 (357)
T ss_pred ---------------------------------EEEEEeC-Ch-------hHHHHHHHHHhcCCcceEEEcCCCCHHHHH
Confidence 0256665 32 1334777888889999999999987 689
Q ss_pred HHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 619 SLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 619 ~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
.+|++||++++||....|+||++++|||+||+|||+|+.++..
T Consensus 259 ~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~ 301 (357)
T cd03795 259 ALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGG 301 (357)
T ss_pred HHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCch
Confidence 9999999999999644799999999999999999999988764
No 32
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.91 E-value=8.3e-22 Score=192.89 Aligned_cols=280 Identities=22% Similarity=0.296 Sum_probs=188.4
Q ss_pred eEEEEeCCC--CCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEe------CCCCc---------hh
Q 006050 244 KFILIFHEL--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE------DRGEP---------SF 306 (663)
Q Consensus 244 KILLI~heL--s~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~------~~~~~---------sf 306 (663)
|||++++.. ..||++..+.+++++|.+.||+|.+++....+... ......+.... .+... ..
T Consensus 1 kil~~~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03817 1 KIGIFTDTYLPQVNGVATSIRRLAEELEKRGHEVYVVAPSYPGAPE-EEEVVVVRPFRVPTFKYPDFRLPLPIPRALIII 79 (374)
T ss_pred CeeEeehhccCCCCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCCc-ccccccccccccccchhhhhhccccHHHHHHHH
Confidence 678887776 46899999999999999999999998755433211 11111111111 00000 01
Q ss_pred hhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhH----------------HHHHHHHhcCCEEEEecH
Q 006050 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYF----------------DRAKLVLDRVKLLVFLSE 370 (663)
Q Consensus 307 k~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf----------------~r~k~vl~rvk~lIflSe 370 (663)
....++|+||+++.....++...+.. ....++++++|.....|. ...+..+..++.+++.|+
T Consensus 80 ~~~~~~Div~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~ 157 (374)
T cd03817 80 LKELGPDIVHTHTPFSLGLLGLRVAR--KLGIPVVATYHTMYEDYTHYVPLGRLLARAVVRRKLSRRFYNRCDAVIAPSE 157 (374)
T ss_pred HhhcCCCEEEECCchhhhhHHHHHHH--HcCCCEEEEecCCHHHHHHHHhcccchhHHHHHHHHHHHHhhhCCEEEeccH
Confidence 12357999999875433332222221 123346666664322111 112344567899999998
Q ss_pred HHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEe
Q 006050 371 SQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLS 450 (663)
Q Consensus 371 s~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VG 450 (663)
...+.+ ...+.. .+..++|++++.+.+. +.. ....++++++.++...|+++|
T Consensus 158 ~~~~~~----~~~~~~--~~~~vi~~~~~~~~~~--------------~~~--------~~~~~~~~~~~~~~~~i~~~G 209 (374)
T cd03817 158 KIADLL----REYGVK--RPIEVIPTGIDLDRFE--------------PVD--------GDDERRKLGIPEDEPVLLYVG 209 (374)
T ss_pred HHHHHH----HhcCCC--CceEEcCCccchhccC--------------ccc--------hhHHHHhcCCCCCCeEEEEEe
Confidence 766553 233332 3478899998764321 110 012266778888899999999
Q ss_pred cCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCc
Q 006050 451 SINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (663)
Q Consensus 451 ri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (663)
++.+.||++.+++|+..+.++.++.
T Consensus 210 ~~~~~k~~~~l~~~~~~~~~~~~~~------------------------------------------------------- 234 (374)
T cd03817 210 RLAKEKNIDFLIRAFARLLKEEPDV------------------------------------------------------- 234 (374)
T ss_pred eeecccCHHHHHHHHHHHHHhCCCe-------------------------------------------------------
Confidence 9999999999999999987654431
Q ss_pred ccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEE
Q 006050 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLW 610 (663)
Q Consensus 531 p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~ 610 (663)
+ .+++|. ++ + .+.++.+++++++.++|.|
T Consensus 235 ------------------------------~-------------l~i~G~-~~------~-~~~~~~~~~~~~~~~~v~~ 263 (374)
T cd03817 235 ------------------------------K-------------LVIVGD-GP------E-REELEELARELGLADRVIF 263 (374)
T ss_pred ------------------------------E-------------EEEEeC-Cc------h-HHHHHHHHHHcCCCCcEEE
Confidence 0 255664 32 2 3347778888999999999
Q ss_pred cCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 611 TPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 611 ~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+|..+ ++..+|+.||++++||. .|+||.+++||||||+|||+++.+++.+
T Consensus 264 ~g~~~~~~~~~~~~~ad~~l~~s~--~e~~~~~~~Ea~~~g~PvI~~~~~~~~~ 315 (374)
T cd03817 264 TGFVPREELPDYYKAADLFVFAST--TETQGLVLLEAMAAGLPVVAVDAPGLPD 315 (374)
T ss_pred eccCChHHHHHHHHHcCEEEeccc--ccCcChHHHHHHHcCCcEEEeCCCChhh
Confidence 99985 89999999999999998 9999999999999999999999998754
No 33
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=99.91 E-value=2.9e-22 Score=199.90 Aligned_cols=260 Identities=20% Similarity=0.233 Sum_probs=169.2
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECchhh
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianSav~ 322 (663)
|||+++.+....||+++...+++++|.++||+|.+++.... .+.. .....++|+||++....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~-~~~~-----------------~~~~~~~diih~~~~~~ 62 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKK-ALIS-----------------KIEIINADIVHLHWIHG 62 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecc-hhhh-----------------ChhcccCCEEEEEcccc
Confidence 68999999988899999999999999999999999886432 1111 12245788888765322
Q ss_pred HHHHHHHHHhCCCCCccEEEEEeehh----------------------------------hhhHHHHHHHH-hcCCEEEE
Q 006050 323 ATWIDQYITRFPAGGSQVVWWIMENR----------------------------------REYFDRAKLVL-DRVKLLVF 367 (663)
Q Consensus 323 aswi~~yi~~~pa~~~~vvwwi~E~r----------------------------------~~yf~r~k~vl-~rvk~lIf 367 (663)
..+....+.... ...++++.+|... ...+.+....+ .....+++
T Consensus 63 ~~~~~~~~~~~~-~~~~~v~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 141 (365)
T cd03825 63 GFLSIEDLSKLL-DRKPVVWTLHDMWPFTGGCHYPGGCDRYKTECGNCPQLGSYPEKDLSRWIWRRKRKAWADLNLTIVA 141 (365)
T ss_pred CccCHHHHHHHH-cCCCEEEEcccCcccccccCCccccccccccCCCCCCCCCCCcccHHHHHHHHHHHHhccCCcEEEe
Confidence 111001111100 1234555555320 01111111112 23445677
Q ss_pred ecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEE
Q 006050 368 LSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVL 447 (663)
Q Consensus 368 lSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl 447 (663)
+|+...+..... ..+. ..+..++|+|++.+.+. +. .+...++.+++++++.+++
T Consensus 142 ~s~~~~~~~~~~---~~~~-~~~~~vi~ngi~~~~~~--------------~~--------~~~~~~~~~~~~~~~~~i~ 195 (365)
T cd03825 142 PSRWLADCARSS---SLFK-GIPIEVIPNGIDTTIFR--------------PR--------DKREARKRLGLPADKKIIL 195 (365)
T ss_pred hhHHHHHHHHhc---cccC-CCceEEeCCCCcccccC--------------CC--------cHHHHHHHhCCCCCCeEEE
Confidence 777666553221 1122 24688999998754321 11 1124577889988888888
Q ss_pred EEecCCC--CCCHHHHHHHHHHhHHh-CCCCChhhhhhcccccccccccccccccccccccccccccccccccccccccc
Q 006050 448 SLSSINP--GKGQLLLVESAQLMIEQ-EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSES 524 (663)
Q Consensus 448 ~VGri~p--~KGqdlLLeA~~~l~e~-~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~ 524 (663)
+.|+... .||++.+++|+..+.++ .++.
T Consensus 196 ~~~~~~~~~~K~~~~ll~a~~~l~~~~~~~~------------------------------------------------- 226 (365)
T cd03825 196 FGAVGGTDPRKGFDELIEALKRLAERWKDDI------------------------------------------------- 226 (365)
T ss_pred EEecCCCccccCHHHHHHHHHHhhhccCCCe-------------------------------------------------
Confidence 7777655 89999999999988554 1211
Q ss_pred ccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCC
Q 006050 525 FTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNL 604 (663)
Q Consensus 525 ~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gL 604 (663)
+ .+++|.... ... .++
T Consensus 227 ------------------------------------~-------------~~i~G~~~~-------~~~--------~~~ 242 (365)
T cd03825 227 ------------------------------------E-------------LVVFGASDP-------EIP--------PDL 242 (365)
T ss_pred ------------------------------------E-------------EEEeCCCch-------hhh--------ccC
Confidence 0 245554211 011 156
Q ss_pred CCcEEEcCCcc---hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 605 SKAMLWTPATT---RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 605 s~~V~~~G~~~---dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
..+|.|+|..+ ++..+|++||++++||. .|+||++++||||||+|||+++.+++.+
T Consensus 243 ~~~v~~~g~~~~~~~~~~~~~~ad~~l~ps~--~e~~g~~~~Eam~~g~PvI~~~~~~~~e 301 (365)
T cd03825 243 PFPVHYLGSLNDDESLALIYSAADVFVVPSL--QENFPNTAIEALACGTPVVAFDVGGIPD 301 (365)
T ss_pred CCceEecCCcCCHHHHHHHHHhCCEEEeccc--cccccHHHHHHHhcCCCEEEecCCCChh
Confidence 67899999987 68899999999999999 9999999999999999999999998764
No 34
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.91 E-value=5.6e-22 Score=198.22 Aligned_cols=272 Identities=17% Similarity=0.218 Sum_probs=174.5
Q ss_pred eEEEEeCC-C--CCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCc------------hhhh
Q 006050 244 KFILIFHE-L--SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP------------SFKT 308 (663)
Q Consensus 244 KILLI~he-L--s~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~------------sfk~ 308 (663)
||++|..+ . ..||++..+.+||.+|.+.||+|.+++.... ....+....||+++...... .+..
T Consensus 1 ~i~~i~~~~~~~~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (363)
T cd04955 1 KIAIIGTRGIPAKYGGFETFVEELAPRLVARGHEVTVYCRSPY-PKQKETEYNGVRLIHIPAPEIGGLGTIIYDILAILH 79 (363)
T ss_pred CeEEEecCcCCcccCcHHHHHHHHHHHHHhcCCCEEEEEccCC-CCCcccccCCceEEEcCCCCccchhhhHHHHHHHHH
Confidence 56676333 2 4699999999999999999999999875432 22223445688876433211 0011
Q ss_pred ----hcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehh----------hhhHHH-HHHHHhcCCEEEEecHHHH
Q 006050 309 ----SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----------REYFDR-AKLVLDRVKLLVFLSESQT 373 (663)
Q Consensus 309 ----~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r----------~~yf~r-~k~vl~rvk~lIflSes~~ 373 (663)
..++|+||........++ ..+.. .+.++++++|... ..++.. .+..+..++.++++|+...
T Consensus 80 ~~~~~~~~~~i~~~~~~~~~~~-~~~~~---~~~~~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~ii~~s~~~~ 155 (363)
T cd04955 80 ALFVKRDIDHVHALGPAIAPFL-PLLRL---KGKKVVVNMDGLEWKRAKWGRPAKRYLKFGEKLAVKFADRLIADSPGIK 155 (363)
T ss_pred HHhccCCeEEEEecCccHHHHH-HHHHh---cCCCEEEEccCcceeecccccchhHHHHHHHHHHHhhccEEEeCCHHHH
Confidence 233455554332221111 11211 1445677766421 111211 1233567889999999887
Q ss_pred HHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCC
Q 006050 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (663)
Q Consensus 374 k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~ 453 (663)
+.... ..+. +..+||+|++.... .+ +...+++++++++. .++++|++.
T Consensus 156 ~~~~~---~~~~----~~~~i~ngv~~~~~--------------~~----------~~~~~~~~~~~~~~-~i~~~G~~~ 203 (363)
T cd04955 156 EYLKE---KYGR----DSTYIPYGADHVVS--------------SE----------EDEILKKYGLEPGR-YYLLVGRIV 203 (363)
T ss_pred HHHHH---hcCC----CCeeeCCCcChhhc--------------ch----------hhhhHHhcCCCCCc-EEEEEeccc
Confidence 77432 2222 23899999875321 11 01234556776555 577999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccc
Q 006050 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (663)
Q Consensus 454 p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 533 (663)
+.||++.|++|++.+.. +.
T Consensus 204 ~~Kg~~~li~a~~~l~~---~~---------------------------------------------------------- 222 (363)
T cd04955 204 PENNIDDLIEAFSKSNS---GK---------------------------------------------------------- 222 (363)
T ss_pred ccCCHHHHHHHHHhhcc---Cc----------------------------------------------------------
Confidence 99999999999987721 10
Q ss_pred cccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCC
Q 006050 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (663)
Q Consensus 534 k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~ 613 (663)
-++++|.... ...| .+.+.+.+++.++|.|+|.
T Consensus 223 ----------------------------------------~l~ivG~~~~---~~~~----~~~~~~~~~~~~~V~~~g~ 255 (363)
T cd04955 223 ----------------------------------------KLVIVGNADH---NTPY----GKLLKEKAAADPRIIFVGP 255 (363)
T ss_pred ----------------------------------------eEEEEcCCCC---cchH----HHHHHHHhCCCCcEEEccc
Confidence 0267776322 1223 2223335778899999999
Q ss_pred cc--hHHHHHHHccEEEEcCCCCC-CCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 614 TT--RVASLYSAADVYVINSQGLG-ETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 614 ~~--dv~~lysaADV~V~pS~~~~-E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.+ ++..+|++||++++||. . |+||++++||||||+|||+|+++++.+
T Consensus 256 ~~~~~~~~~~~~ad~~v~ps~--~~e~~~~~~~EAma~G~PvI~s~~~~~~e 305 (363)
T cd04955 256 IYDQELLELLRYAALFYLHGH--SVGGTNPSLLEAMAYGCPVLASDNPFNRE 305 (363)
T ss_pred cChHHHHHHHHhCCEEEeCCc--cCCCCChHHHHHHHcCCCEEEecCCccce
Confidence 86 68899999999999998 6 999999999999999999999998764
No 35
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=99.91 E-value=1.5e-21 Score=192.76 Aligned_cols=283 Identities=20% Similarity=0.218 Sum_probs=180.9
Q ss_pred eEEEEeCCCC-CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhc-CCeEEEeCCCCc------hhhhhcCccEE
Q 006050 244 KFILIFHELS-MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR-RKIKVLEDRGEP------SFKTSMKADLV 315 (663)
Q Consensus 244 KILLI~heLs-~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~-~gIkVl~~~~~~------sfk~~~k~DLV 315 (663)
||++|.+... .||.+..+.+|+++|.+.||+|.+++............. .+.......... .+....++|+|
T Consensus 1 kI~~v~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dii 80 (366)
T cd03822 1 RIALVSPYPPRKCGIATFTTDLVNALSARGPDVLVVSVAALYPSLLYGGEQEVVRVIVLDNPLDYRRAARAIRLSGPDVV 80 (366)
T ss_pred CeEEecCCCCCCCcHHHHHHHHHHHhhhcCCeEEEEEeecccCcccCCCcccceeeeecCCchhHHHHHHHHhhcCCCEE
Confidence 6889988887 789999999999999999999998876544322211111 112222111111 11234689999
Q ss_pred EECchh--hHHHHHHHHHh-CCCCCccEEEEEeeh-h----hhhHHHHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccC
Q 006050 316 IAGSAV--CATWIDQYITR-FPAGGSQVVWWIMEN-R----REYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL 387 (663)
Q Consensus 316 ianSav--~aswi~~yi~~-~pa~~~~vvwwi~E~-r----~~yf~r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l 387 (663)
|++... .+.+...++.. ......++++++|.. . ..+....+.++..++.++++|....+.+. . .. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~---~-~~--~ 154 (366)
T cd03822 81 VIQHEYGIFGGEAGLYLLLLLRGLGIPVVVTLHTVLLHEPRPGDRALLRLLLRRADAVIVMSSELLRALL---L-RA--Y 154 (366)
T ss_pred EEeeccccccchhhHHHHHHHhhcCCCEEEEEecCCccccchhhhHHHHHHHhcCCEEEEeeHHHHHHHH---h-hc--C
Confidence 986511 11111111111 112345677888874 1 11112234567789999999732222211 1 11 1
Q ss_pred CCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHH
Q 006050 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (663)
Q Consensus 388 ~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~ 467 (663)
..+..++|++++.... .+.. ..++.....+...|+++|++.+.||++.+++|++.
T Consensus 155 ~~~~~~i~~~~~~~~~--------------~~~~-----------~~~~~~~~~~~~~i~~~G~~~~~K~~~~ll~a~~~ 209 (366)
T cd03822 155 PEKIAVIPHGVPDPPA--------------EPPE-----------SLKALGGLDGRPVLLTFGLLRPYKGLELLLEALPL 209 (366)
T ss_pred CCcEEEeCCCCcCccc--------------CCch-----------hhHhhcCCCCCeEEEEEeeccCCCCHHHHHHHHHH
Confidence 3468899999865321 1110 01344556778899999999999999999999999
Q ss_pred hHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCC
Q 006050 468 MIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGN 547 (663)
Q Consensus 468 l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~ 547 (663)
+.++.|+.
T Consensus 210 ~~~~~~~~------------------------------------------------------------------------ 217 (366)
T cd03822 210 LVAKHPDV------------------------------------------------------------------------ 217 (366)
T ss_pred HHhhCCCe------------------------------------------------------------------------
Confidence 97765542
Q ss_pred ccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCC-c--chHHHHHHHc
Q 006050 548 TDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA-T--TRVASLYSAA 624 (663)
Q Consensus 548 ~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~-~--~dv~~lysaA 624 (663)
-++++|..... ...+... ...+++.+++.++|.|.|. . .++..+|+.|
T Consensus 218 --------------------------~l~i~G~~~~~--~~~~~~~-~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~a 268 (366)
T cd03822 218 --------------------------RLLVAGETHPD--LERYRGE-AYALAERLGLADRVIFINRYLPDEELPELFSAA 268 (366)
T ss_pred --------------------------EEEEeccCccc--hhhhhhh-hHhHHHhcCCCCcEEEecCcCCHHHHHHHHhhc
Confidence 02566653221 1011011 1134777899999999987 4 4899999999
Q ss_pred cEEEEcCCCCCC--CCcHHHHHHHHcCCCEEEeCCCCc
Q 006050 625 DVYVINSQGLGE--TFGRVTIEAMAFGVPMLEAQKKLL 660 (663)
Q Consensus 625 DV~V~pS~~~~E--~FG~ViiEAMA~GlPVVatd~~~l 660 (663)
|++++||. .| +||.+++||||||+|||+++.++.
T Consensus 269 d~~v~ps~--~e~~~~~~~~~Ea~a~G~PvI~~~~~~~ 304 (366)
T cd03822 269 DVVVLPYR--SADQTQSGVLAYAIGFGKPVISTPVGHA 304 (366)
T ss_pred CEEEeccc--ccccccchHHHHHHHcCCCEEecCCCCh
Confidence 99999999 88 999999999999999999999873
No 36
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.91 E-value=2.4e-22 Score=223.79 Aligned_cols=287 Identities=17% Similarity=0.199 Sum_probs=183.2
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHH----HHHHCCC--------eEEEEE--EcCCCC---ChhHHhcCCeEEEeCC-----
Q 006050 244 KFILIFHELSMTGAPLSMMELAT----ELLSCGA--------TVSAVV--LSKRGG---LMPELARRKIKVLEDR----- 301 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~----~L~s~G~--------~V~vVv--Ls~~Gg---L~~eL~~~gIkVl~~~----- 301 (663)
++.++..+|..||||+++..+|- +..+.|- .|.+++ +..++| +.+++.+.+|.|.+..
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (578)
T PRK15490 163 RLALCTGSLGSGGAERQISRLAIEIARKYRQKGKIGGLKVEEPVELIIRSLTPELRQDFFLKEVLEEQVEVLEIAKITGN 242 (578)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHHhcccccccccccceeEEEeecCcccCcchhHHHHHhcCCceEEeeccchh
Confidence 57899999999999999995554 4444444 455554 333343 5567777888876421
Q ss_pred ----C----C--ch------------------hhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeeh----hh
Q 006050 302 ----G----E--PS------------------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN----RR 349 (663)
Q Consensus 302 ----~----~--~s------------------fk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~----r~ 349 (663)
. . .+ +-...++|+||++..-+ ++...+....++.+.++...|-. ..
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ir~~rpDIVHt~~~~a--~l~g~laA~lagvpviv~~~h~~~~~~~~ 320 (578)
T PRK15490 243 LFDDATIESPELRLLLSHLPPVCKYGIKHLVPHLCERKLDYLSVWQDGA--CLMIALAALIAGVPRIQLGLRGLPPVVRK 320 (578)
T ss_pred hhhhccccchHHHHHHhcCChHHHHHHHHHHHHHHHcCCCEEEEcCccc--HHHHHHHHHhcCCCEEEEeecccCCcchh
Confidence 0 0 00 11356899999975211 11111211123333333333210 00
Q ss_pred hhHHHHHHHHhcCCE------EEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHH
Q 006050 350 EYFDRAKLVLDRVKL------LVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR 423 (663)
Q Consensus 350 ~yf~r~k~vl~rvk~------lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ 423 (663)
..+.+....+.+... ++..|..+++....++ +++ +.++.+||||++.+.+ .+...
T Consensus 321 r~~~~e~~~~~~a~~i~~~sd~v~~s~~v~~~l~~~l---gip-~~KI~VIyNGVD~~rf--------------~p~~~- 381 (578)
T PRK15490 321 RLFKPEYEPLYQALAVVPGVDFMSNNHCVTRHYADWL---KLE-AKHFQVVYNGVLPPST--------------EPSSE- 381 (578)
T ss_pred hHHHHHHHHhhhhceeEecchhhhccHHHHHHHHHHh---CCC-HHHEEEEeCCcchhhc--------------Cccch-
Confidence 001110111112122 4445666556544332 443 3468999999976432 11110
Q ss_pred HhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccc
Q 006050 424 EKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRG 503 (663)
Q Consensus 424 ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~ 503 (663)
.+...+..+ ..++++++++|+++|++.+.||++.+|+|+..+.++.|+.
T Consensus 382 -~~~~~r~~~--~~~l~~~~~vIg~VgRl~~~Kg~~~LI~A~a~llk~~pdi---------------------------- 430 (578)
T PRK15490 382 -VPHKIWQQF--TQKTQDADTTIGGVFRFVGDKNPFAWIDFAARYLQHHPAT---------------------------- 430 (578)
T ss_pred -hhHHHHHHh--hhccCCCCcEEEEEEEEehhcCHHHHHHHHHHHHhHCCCe----------------------------
Confidence 000011111 2455677789999999999999999999999887765542
Q ss_pred cccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCC
Q 006050 504 LLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGS 583 (663)
Q Consensus 504 ~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~ 583 (663)
-++++|+ |+
T Consensus 431 ----------------------------------------------------------------------rLvIVGd-G~ 439 (578)
T PRK15490 431 ----------------------------------------------------------------------RFVLVGD-GD 439 (578)
T ss_pred ----------------------------------------------------------------------EEEEEeC-ch
Confidence 0267786 43
Q ss_pred CCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 584 KSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 584 ~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.++.++.+++++|+.++|+|+|+.+++..+|++||+||+||. .|+||++++||||||+|||+|++++..+
T Consensus 440 -------~~eeLk~la~elgL~d~V~FlG~~~Dv~~~LaaADVfVlPS~--~EGfp~vlLEAMA~GlPVVATdvGG~~E 509 (578)
T PRK15490 440 -------LRAEAQKRAEQLGILERILFVGASRDVGYWLQKMNVFILFSR--YEGLPNVLIEAQMVGVPVISTPAGGSAE 509 (578)
T ss_pred -------hHHHHHHHHHHcCCCCcEEECCChhhHHHHHHhCCEEEEccc--ccCccHHHHHHHHhCCCEEEeCCCCcHH
Confidence 244588899999999999999999999999999999999999 9999999999999999999999998764
No 37
>PRK10125 putative glycosyl transferase; Provisional
Probab=99.91 E-value=1.1e-22 Score=217.52 Aligned_cols=268 Identities=14% Similarity=0.131 Sum_probs=170.2
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcC-CeEE-EeCC----------------CCc
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKV-LEDR----------------GEP 304 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~-gIkV-l~~~----------------~~~ 304 (663)
||||+|...+.+|||++.+++||+.|.+.||+|.++.....++..+++... ...+ +..+ +..
T Consensus 1 mkil~i~~~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (405)
T PRK10125 1 MNILQFNVRLAEGGAAGVALDLHQRALQQGLASHFVYGYGKGGKESVSHQNYPQVIKHTPRMTAMANIALFRLFNRDLFG 80 (405)
T ss_pred CeEEEEEeeecCCchhHHHHHHHHHHHhcCCeEEEEEecCCCcccccccCCcceEEEecccHHHHHHHHHHHhcchhhcc
Confidence 699999999999999999999999999999999999876655544332111 1111 0000 001
Q ss_pred h-------hhhhcCccEEEECchhh---HH-HHHHHHH--hCCCCCccEEEEEeehhhh---------------------
Q 006050 305 S-------FKTSMKADLVIAGSAVC---AT-WIDQYIT--RFPAGGSQVVWWIMENRRE--------------------- 350 (663)
Q Consensus 305 s-------fk~~~k~DLVianSav~---as-wi~~yi~--~~pa~~~~vvwwi~E~r~~--------------------- 350 (663)
+ +....+||+||.|..-. .- .+..+.. .......+++|..|+....
T Consensus 81 ~~~~~~~~i~~~~~pDviHlH~~~~~~~~~~~l~~~~~~~~~~~~~~piV~TlHd~~~~tg~c~~~~~C~~~~~~c~~Cp 160 (405)
T PRK10125 81 NFNELYRTITRTPGPVVLHFHVLHSYWLNLKSVVRFCEKVKNHKPDVTLVWTLHDHWSVTGRCAFTDGCEGWKTGCQKCP 160 (405)
T ss_pred hHHHHHHHHhhccCCCEEEEecccCceecHHHHHHHHhhhhcccCCCCEEEecccccccCCCcCCCcccccccccCCCCC
Confidence 1 11245899999885322 11 1222211 1223356789977764310
Q ss_pred ----h----HHH-------HHHH----HhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccC
Q 006050 351 ----Y----FDR-------AKLV----LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCS 411 (663)
Q Consensus 351 ----y----f~r-------~k~v----l~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~s 411 (663)
| +++ .+.+ ++....+|..|+...+.+... .. ..++.+||+|++.+..
T Consensus 161 ~l~~~~~~~~d~~~~~~~~k~~~~~~~~~~~~~iV~~S~~l~~~~~~~-----~~-~~~i~vI~NGid~~~~-------- 226 (405)
T PRK10125 161 TLNNYPPVKVDRAHQLVAGKRQLFREMLALGCQFISPSQHVADAFNSL-----YG-PGRCRIINNGIDMATE-------- 226 (405)
T ss_pred CccCCCCCccchHHHHHHHHHHHHHHHhhcCcEEEEcCHHHHHHHHHH-----cC-CCCEEEeCCCcCcccc--------
Confidence 2 121 1222 223457888888766653221 11 2468899999975311
Q ss_pred CCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEec-C-CCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccc
Q 006050 412 LNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS-I-NPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRK 489 (663)
Q Consensus 412 lntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGr-i-~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~ 489 (663)
.+.++.. ..+ .+++..+|+++|+ + .++||++.|++|+..+. ++.
T Consensus 227 ----~~~~~~~---------~~~----~~~~~~~il~v~~~~~~~~Kg~~~li~A~~~l~---~~~-------------- 272 (405)
T PRK10125 227 ----AILAELP---------PVR----ETQGKPKIAVVAHDLRYDGKTDQQLVREMMALG---DKI-------------- 272 (405)
T ss_pred ----ccccccc---------ccc----cCCCCCEEEEEEeccccCCccHHHHHHHHHhCC---CCe--------------
Confidence 0000000 001 1345678999999 4 48899999999998761 110
Q ss_pred cccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccc
Q 006050 490 KSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK 569 (663)
Q Consensus 490 ~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~ 569 (663)
+
T Consensus 273 -----------------------------------------------------------------------~-------- 273 (405)
T PRK10125 273 -----------------------------------------------------------------------E-------- 273 (405)
T ss_pred -----------------------------------------------------------------------E--------
Confidence 0
Q ss_pred cccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc---hHHHHHHHccEEEEcCCCCCCCCcHHHHHHH
Q 006050 570 QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT---RVASLYSAADVYVINSQGLGETFGRVTIEAM 646 (663)
Q Consensus 570 ~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~---dv~~lysaADV~V~pS~~~~E~FG~ViiEAM 646 (663)
++++|. ++. . . .+.|.++|... ++..+|++||+||+||. .|+||++++|||
T Consensus 274 -----L~ivG~-g~~-----~--~-----------~~~v~~~g~~~~~~~l~~~y~~aDvfV~pS~--~Egfp~vilEAm 327 (405)
T PRK10125 274 -----LHTFGK-FSP-----F--T-----------AGNVVNHGFETDKRKLMSALNQMDALVFSSR--VDNYPLILCEAL 327 (405)
T ss_pred -----EEEEcC-CCc-----c--c-----------ccceEEecCcCCHHHHHHHHHhCCEEEECCc--cccCcCHHHHHH
Confidence 266775 321 0 0 24577777653 68999999999999999 999999999999
Q ss_pred HcCCCEEEeCCCCccCC
Q 006050 647 AFGVPMLEAQKKLLSIM 663 (663)
Q Consensus 647 A~GlPVVatd~~~l~~~ 663 (663)
|||+|||+|+++++.++
T Consensus 328 A~G~PVVat~~gG~~Ei 344 (405)
T PRK10125 328 SIGVPVIATHSDAAREV 344 (405)
T ss_pred HcCCCEEEeCCCChHHh
Confidence 99999999999998754
No 38
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=99.91 E-value=8e-22 Score=190.79 Aligned_cols=273 Identities=20% Similarity=0.202 Sum_probs=180.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCc----h---------h---h
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP----S---------F---K 307 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~----s---------f---k 307 (663)
||++|.+. .+|++..+.+++++|.+.||+|.+++....... .+...++.+...+... . + .
T Consensus 1 kIl~i~~~--~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (359)
T cd03808 1 KILHIVTV--DGGLYSFRLPLIKALRAAGYEVHVVAPPGDELE--ELEALGVKVIPIPLDRRGINPFKDLKALLRLYRLL 76 (359)
T ss_pred CeeEEEec--chhHHHHHHHHHHHHHhcCCeeEEEecCCCccc--ccccCCceEEeccccccccChHhHHHHHHHHHHHH
Confidence 68899888 788999999999999999999998875433321 4455677765432211 0 0 1
Q ss_pred hhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhh---------hHH-HHHHHHhcCCEEEEecHHHHHHHH
Q 006050 308 TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE---------YFD-RAKLVLDRVKLLVFLSESQTKQWL 377 (663)
Q Consensus 308 ~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~---------yf~-r~k~vl~rvk~lIflSes~~k~w~ 377 (663)
...++|+||+++.... ++....... ....++++++|..... ++. ..+..+..++.++++|+...+...
T Consensus 77 ~~~~~dvv~~~~~~~~-~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~~ 154 (359)
T cd03808 77 RKERPDIVHTHTPKPG-ILGRLAARL-AGVPKVIYTVHGLGFVFTSGGLKRRLYLLLERLALRFTDKVIFQNEDDRDLAL 154 (359)
T ss_pred HhcCCCEEEEccccch-hHHHHHHHH-cCCCCEEEEecCcchhhccchhHHHHHHHHHHHHHhhccEEEEcCHHHHHHHH
Confidence 2358999999864322 222222221 2344556655542111 111 123445678899999998777644
Q ss_pred HHhHhhcccC-CCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCC
Q 006050 378 TWCEEEKLKL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (663)
Q Consensus 378 ~~~~~~~i~l-~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~K 456 (663)
.. +... .....++|++++.+.+. +... + ..++.+.++++|++.+.|
T Consensus 155 ~~----~~~~~~~~~~~~~~~~~~~~~~--------------~~~~-------------~--~~~~~~~i~~~G~~~~~k 201 (359)
T cd03808 155 KL----GIIKKKKTVLIPGSGVDLDRFS--------------PSPE-------------P--IPEDDPVFLFVARLLKDK 201 (359)
T ss_pred Hh----cCCCcCceEEecCCCCChhhcC--------------cccc-------------c--cCCCCcEEEEEecccccc
Confidence 32 2211 12345566666543211 1000 0 235678999999999999
Q ss_pred CHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCccccccc
Q 006050 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (663)
Q Consensus 457 GqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~ 536 (663)
|++.+++|+..+.++.++.
T Consensus 202 ~~~~li~~~~~l~~~~~~~------------------------------------------------------------- 220 (359)
T cd03808 202 GIDELLEAARILKAKGPNV------------------------------------------------------------- 220 (359)
T ss_pred CHHHHHHHHHHHHhcCCCe-------------------------------------------------------------
Confidence 9999999999986644442
Q ss_pred CCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcch
Q 006050 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTR 616 (663)
Q Consensus 537 ~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~d 616 (663)
-.+++|.... ..+.+. . ++...++.++|.|+|..++
T Consensus 221 -------------------------------------~l~i~G~~~~----~~~~~~-~--~~~~~~~~~~v~~~g~~~~ 256 (359)
T cd03808 221 -------------------------------------RLLLVGDGDE----ENPAAI-L--EIEKLGLEGRVEFLGFRDD 256 (359)
T ss_pred -------------------------------------EEEEEcCCCc----chhhHH-H--HHHhcCCcceEEEeecccc
Confidence 0256665322 111111 1 4666788899999999889
Q ss_pred HHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 617 v~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+..+|++||++++||. .|+||.+++||||||+|||+++.++..+
T Consensus 257 ~~~~~~~adi~i~ps~--~e~~~~~~~Ea~~~G~Pvi~s~~~~~~~ 300 (359)
T cd03808 257 VPELLAAADVFVLPSY--REGLPRVLLEAMAMGRPVIATDVPGCRE 300 (359)
T ss_pred HHHHHHhccEEEecCc--ccCcchHHHHHHHcCCCEEEecCCCchh
Confidence 9999999999999999 8999999999999999999999987654
No 39
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=99.90 E-value=9.5e-22 Score=209.39 Aligned_cols=278 Identities=17% Similarity=0.178 Sum_probs=183.9
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCC--ChhHHh----cCCeEEEeCCC--------------
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG--LMPELA----RRKIKVLEDRG-------------- 302 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~Gg--L~~eL~----~~gIkVl~~~~-------------- 302 (663)
|||.+|.++.- .=.|.-+.+-..+|.++|++|.++++.+... ..+... ...+..++...
T Consensus 1 m~ia~~~~~~P-~~setFi~~ei~~l~~~G~~v~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (406)
T PRK15427 1 MKVGFFLLKFP-LSSETFVLNQITAFIDMGFEVEIVALQKGDTQNTHAAWTKYNLAAKTRWLQDEPQGKVAKLRHRASQT 79 (406)
T ss_pred CeEEEEeccCC-ccchhhHHHHHHHHHHcCceEEEEEccCCCccccccchhhhccccceeecCcCccchHHHHhhhhhhH
Confidence 47888877765 4447778888889999999999998755432 111111 11221111000
Q ss_pred -----------Cch-------h------------hhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh---
Q 006050 303 -----------EPS-------F------------KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR--- 349 (663)
Q Consensus 303 -----------~~s-------f------------k~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~--- 349 (663)
... . ....++|+||+|...++ +....+........+++++.|...-
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diihaH~~~~~-~~~~~~~~~~~~~~~~~~t~Hg~d~~~~ 158 (406)
T PRK15427 80 LRGIHRKNTWKALNLKRYGAESRNLILSAICAQVATPFVADVFIAHFGPAG-VTAAKLRELGVLRGKIATIFHGIDISSR 158 (406)
T ss_pred hhhhcccchhccCChhhhhhhhHHHHHHHHHhhhhccCCCCEEEEcCChHH-HHHHHHHHhCCCCCCeEEEEcccccccc
Confidence 000 0 01346899999976443 2233333322222234556664210
Q ss_pred ----hhHHHHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHh
Q 006050 350 ----EYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREK 425 (663)
Q Consensus 350 ----~yf~r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ek 425 (663)
.|....+..+.+++.++++|+...++. .+.+++ ..++.++|+|++.+.+... +.
T Consensus 159 ~~~~~~~~~~~~~~~~ad~vv~~S~~~~~~l----~~~g~~-~~ki~vi~nGvd~~~f~~~------------~~----- 216 (406)
T PRK15427 159 EVLNHYTPEYQQLFRRGDLMLPISDLWAGRL----QKMGCP-PEKIAVSRMGVDMTRFSPR------------PV----- 216 (406)
T ss_pred hhhhhhhHHHHHHHHhCCEEEECCHHHHHHH----HHcCCC-HHHEEEcCCCCCHHHcCCC------------cc-----
Confidence 121223455678999999999766653 333443 2467899999986543110 00
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccc
Q 006050 426 RNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLL 505 (663)
Q Consensus 426 r~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l 505 (663)
...++...|+++|++.+.||++.|++|++.+.++.++.
T Consensus 217 ------------~~~~~~~~il~vGrl~~~Kg~~~ll~a~~~l~~~~~~~------------------------------ 254 (406)
T PRK15427 217 ------------KAPATPLEIISVARLTEKKGLHVAIEACRQLKEQGVAF------------------------------ 254 (406)
T ss_pred ------------ccCCCCeEEEEEeCcchhcCHHHHHHHHHHHHhhCCCE------------------------------
Confidence 01234567999999999999999999999997665542
Q ss_pred cccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCC
Q 006050 506 QMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKS 585 (663)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~ 585 (663)
-++++|. |+
T Consensus 255 --------------------------------------------------------------------~l~ivG~-G~-- 263 (406)
T PRK15427 255 --------------------------------------------------------------------RYRILGI-GP-- 263 (406)
T ss_pred --------------------------------------------------------------------EEEEEEC-ch--
Confidence 0256775 33
Q ss_pred CChhHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCC----CCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 586 NKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQG----LGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 586 n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~----~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
+ ++.++.+++++|++++|.|+|..+ ++.++|++||+||+||.. ..|+||++++||||||+|||+|+.++
T Consensus 264 ----~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~aDv~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~~g 338 (406)
T PRK15427 264 ----W-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDDADVFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLHSG 338 (406)
T ss_pred ----h-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHhCCEEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCCCC
Confidence 2 445888999999999999999975 899999999999999971 13999999999999999999999998
Q ss_pred ccC
Q 006050 660 LSI 662 (663)
Q Consensus 660 l~~ 662 (663)
+.+
T Consensus 339 ~~E 341 (406)
T PRK15427 339 IPE 341 (406)
T ss_pred chh
Confidence 865
No 40
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=99.90 E-value=1.1e-22 Score=200.65 Aligned_cols=277 Identities=20% Similarity=0.210 Sum_probs=185.2
Q ss_pred eEEEEeCCCCC---CCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEE----eC---CCC-------chh
Q 006050 244 KFILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL----ED---RGE-------PSF 306 (663)
Q Consensus 244 KILLI~heLs~---gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl----~~---~~~-------~sf 306 (663)
||+++.+.+.. ||+++++.+|+++|.+.|+.|.+++.+................. .. ... ...
T Consensus 1 ~ili~~~~~~~~~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (365)
T cd03809 1 RILIDARFLASRRPTGIGRYARELLRALLKLDPEEVLLLLPGAPGLLLLPLRAALRLLLRLPRRLLWGLLFLLRAGDRLL 80 (365)
T ss_pred CEEEechhhhcCCCCcHHHHHHHHHHHHHhcCCceEEEEecCccccccccchhccccccccccccccchhhHHHHHHHHH
Confidence 67888888865 99999999999999999999999887654433222211111100 00 000 001
Q ss_pred hhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh-------------hhHHHHHHHHhcCCEEEEecHHHH
Q 006050 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-------------EYFDRAKLVLDRVKLLVFLSESQT 373 (663)
Q Consensus 307 k~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~-------------~yf~r~k~vl~rvk~lIflSes~~ 373 (663)
....++|+||+++...... .....++++++|+... .+....+.++..++.++++|+...
T Consensus 81 ~~~~~~Dii~~~~~~~~~~--------~~~~~~~i~~~hd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 152 (365)
T cd03809 81 LLLLGLDLLHSPHNTAPLL--------RLRGVPVVVTIHDLIPLRFPEYFSPGFRRYFRRLLRRALRRADAIITVSEATK 152 (365)
T ss_pred hhhcCCCeeeecccccCcc--------cCCCCCEEEEeccchhhhCcccCCHHHHHHHHHHHHHHHHHcCEEEEccHHHH
Confidence 1235799999886433211 1224456666765311 111123455678899999999887
Q ss_pred HHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCC
Q 006050 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (663)
Q Consensus 374 k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~ 453 (663)
+...++. ++. ..+..++|++++.+... +... .. +.......+..+|+++|++.
T Consensus 153 ~~~~~~~---~~~-~~~~~vi~~~~~~~~~~--------------~~~~--------~~-~~~~~~~~~~~~i~~~G~~~ 205 (365)
T cd03809 153 RDLLRYL---GVP-PDKIVVIPLGVDPRFRP--------------PPAE--------AE-VLRALYLLPRPYFLYVGTIE 205 (365)
T ss_pred HHHHHHh---CcC-HHHEEeeccccCccccC--------------CCch--------HH-HHHHhcCCCCCeEEEeCCCc
Confidence 7755432 211 23578899998764321 1100 00 33345566788999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccc
Q 006050 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (663)
Q Consensus 454 p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 533 (663)
+.||++.+++|+..+.++.+..
T Consensus 206 ~~K~~~~~l~~~~~~~~~~~~~---------------------------------------------------------- 227 (365)
T cd03809 206 PRKNLERLLEAFARLPAKGPDP---------------------------------------------------------- 227 (365)
T ss_pred cccCHHHHHHHHHHHHHhcCCC----------------------------------------------------------
Confidence 9999999999999997665431
Q ss_pred cccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCC
Q 006050 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (663)
Q Consensus 534 k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~ 613 (663)
-.+++|..+.. . .. .....+..++.++|+|+|.
T Consensus 228 ----------------------------------------~l~i~G~~~~~---~---~~-~~~~~~~~~~~~~v~~~g~ 260 (365)
T cd03809 228 ----------------------------------------KLVIVGKRGWL---N---EE-LLARLRELGLGDRVRFLGY 260 (365)
T ss_pred ----------------------------------------CEEEecCCccc---c---HH-HHHHHHHcCCCCeEEECCC
Confidence 02566763331 1 12 2222266889999999999
Q ss_pred cc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 614 TT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 614 ~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.+ ++..+|++||++++||. .|+||++++||||+|+|||+++.+++.+
T Consensus 261 ~~~~~~~~~~~~~d~~l~ps~--~e~~~~~~~Ea~a~G~pvI~~~~~~~~e 309 (365)
T cd03809 261 VSDEELAALYRGARAFVFPSL--YEGFGLPVLEAMACGTPVIASNISSLPE 309 (365)
T ss_pred CChhHHHHHHhhhhhhcccch--hccCCCCHHHHhcCCCcEEecCCCCccc
Confidence 95 89999999999999999 9999999999999999999999988764
No 41
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=99.90 E-value=1.3e-21 Score=208.09 Aligned_cols=296 Identities=15% Similarity=0.105 Sum_probs=180.5
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCc--h---------------
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--S--------------- 305 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~--s--------------- 305 (663)
+|+++++. .+.|++..+.++|.+|.+.||+|++++.+..+...+.....||++....... .
T Consensus 4 ~~~~~~~~--~~~~~~~R~~~~a~~L~~~G~~V~ii~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (415)
T cd03816 4 KRVCVLVL--GDIGRSPRMQYHALSLAKHGWKVDLVGYLETPPHDEILSNPNITIHPLPPPPQRLNKLPFLLFAPLKVLW 81 (415)
T ss_pred cEEEEEEe--cccCCCHHHHHHHHHHHhcCceEEEEEecCCCCCHHHhcCCCEEEEECCCCccccccchHHHHHHHHHHH
Confidence 44444433 3577777789999999999999999986644433332567888887543321 0
Q ss_pred --------hhhhcCccEEEECch--hhHHHHHHHHHhCCCCCccEEEEEeehhh----------h----hHHH-HHHHHh
Q 006050 306 --------FKTSMKADLVIAGSA--VCATWIDQYITRFPAGGSQVVWWIMENRR----------E----YFDR-AKLVLD 360 (663)
Q Consensus 306 --------fk~~~k~DLVianSa--v~aswi~~yi~~~pa~~~~vvwwi~E~r~----------~----yf~r-~k~vl~ 360 (663)
+....++|+||+++. ..+.++..++.... ..+++..+|+... . .+.. .+.+..
T Consensus 82 ~~~~~~~~l~~~~~~Dvi~~~~~~~~~~~~~a~~~~~~~--~~~~V~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ 159 (415)
T cd03816 82 QFFSLLWLLYKLRPADYILIQNPPSIPTLLIAWLYCLLR--RTKLIIDWHNYGYTILALKLGENHPLVRLAKWYEKLFGR 159 (415)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHh--CCeEEEEcCCchHHHHhcccCCCCHHHHHHHHHHHHHhh
Confidence 012247999998752 11222222222211 2345544454210 0 1111 123456
Q ss_pred cCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHH---------
Q 006050 361 RVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRD--------- 431 (663)
Q Consensus 361 rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~--------- 431 (663)
+++.+|++|+...++.. +.++. ..++.+||++.. +.+. .+ ... +.+.....
T Consensus 160 ~ad~ii~vS~~~~~~l~----~~~~~-~~ki~vI~Ng~~-~~f~--p~--------~~~----~~~~~~~~~~~~~~~~~ 219 (415)
T cd03816 160 LADYNLCVTKAMKEDLQ----QFNNW-KIRATVLYDRPP-EQFR--PL--------PLE----EKHELFLKLAKTFLTRE 219 (415)
T ss_pred cCCEeeecCHHHHHHHH----hhhcc-CCCeeecCCCCH-HHce--eC--------cHH----HHHHHHHhccccccccc
Confidence 78999999999877643 23443 357889999843 2211 11 000 00000000
Q ss_pred HHHHHhCC-CCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccc
Q 006050 432 SVRKEMGL-TDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDD 510 (663)
Q Consensus 432 ~vR~elGL-~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~ 510 (663)
......++ +++..+++++|++.+.||++.|++|+..+.++..... .|
T Consensus 220 ~~~~~~~~~~~~~~vi~~~grl~~~K~~~~li~A~~~l~~~~~~~~-------------------~~------------- 267 (415)
T cd03816 220 LRIGAVQLSEERPALLVSSTSWTPDEDFGILLDALVAYEKSAATGP-------------------KL------------- 267 (415)
T ss_pred cccccceecCCCceEEEEeccccCCCCHHHHHHHHHHHHHhhcccc-------------------cC-------------
Confidence 00001122 3455688899999999999999999999865422100 00
Q ss_pred ccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhH
Q 006050 511 VGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPY 590 (663)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y 590 (663)
|+ . .++++|+ |+
T Consensus 268 ----------------------------~~-------------------i-------------~l~ivG~-G~------- 279 (415)
T cd03816 268 ----------------------------PK-------------------L-------------LCIITGK-GP------- 279 (415)
T ss_pred ----------------------------CC-------------------E-------------EEEEEec-Cc-------
Confidence 00 0 1266776 43
Q ss_pred HHHHHHHHHHhCCCCCcEEEcCCc--chHHHHHHHccEEEEcCC-CCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 591 VKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAADVYVINSQ-GLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 591 ~k~~L~~l~~~~gLs~~V~~~G~~--~dv~~lysaADV~V~pS~-~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.++.++++++++++++.+.+.|+. ++++.+|++||++|+++. ..+|+||++++||||||+|||+|+++++.+
T Consensus 280 ~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~aDv~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~~~~~~e 354 (415)
T cd03816 280 LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLASADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCALDFKCIDE 354 (415)
T ss_pred cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHhCCEEEEccccccccCCcHHHHHHHHcCCCEEEeCCCCHHH
Confidence 144588889999998767777765 599999999999997542 126889999999999999999999987654
No 42
>PRK14098 glycogen synthase; Provisional
Probab=99.90 E-value=1.1e-21 Score=214.83 Aligned_cols=305 Identities=16% Similarity=0.127 Sum_probs=198.0
Q ss_pred CeEEEEeCCCC----CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhH---Hhc-----------------------
Q 006050 243 RKFILIFHELS----MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE---LAR----------------------- 292 (663)
Q Consensus 243 kKILLI~heLs----~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~e---L~~----------------------- 292 (663)
+|||+|..|.. .||--=++-.|.++|.++||+|.+|+. .-+.+... +..
T Consensus 6 ~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P-~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (489)
T PRK14098 6 FKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMP-KYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHVKVT 84 (489)
T ss_pred cEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcC-CCCchhhhhhccccceEEEEEEEeecCeeEEEEEEEe
Confidence 89999999985 467677788899999999999998764 33333211 000
Q ss_pred ----CCeEEE--e-----CC----CC---------c--hh-----------hh-hcCccEEEECchhhHHHHHHHHHhC-
Q 006050 293 ----RKIKVL--E-----DR----GE---------P--SF-----------KT-SMKADLVIAGSAVCATWIDQYITRF- 333 (663)
Q Consensus 293 ----~gIkVl--~-----~~----~~---------~--sf-----------k~-~~k~DLVianSav~aswi~~yi~~~- 333 (663)
.+++++ + .+ ++ . .| .. ..++|+||+|...+ .++..++...
T Consensus 85 ~~~~~~v~~~~~~~~~~f~r~~~y~~~~~g~~~~d~~~rf~~f~~a~l~~~~~~~~~pDiiH~hdw~t-~l~~~~l~~~~ 163 (489)
T PRK14098 85 ALPSSKIQTYFLYNEKYFKRNGLFTDMSLGGDLKGSAEKVIFFNVGVLETLQRLGWKPDIIHCHDWYA-GLVPLLLKTVY 163 (489)
T ss_pred cccCCCceEEEEeCHHHcCCCCcCCCCccCCCCCcHHHHHHHHHHHHHHHHHhcCCCCCEEEecCcHH-HHHHHHHHHHh
Confidence 022322 0 00 00 0 00 00 13799999997432 3444444311
Q ss_pred ---C-CCCccEEEEEeehhh---------------hhHH----------HHHHHHhcCCEEEEecHHHHHHHHHHhH-hh
Q 006050 334 ---P-AGGSQVVWWIMENRR---------------EYFD----------RAKLVLDRVKLLVFLSESQTKQWLTWCE-EE 383 (663)
Q Consensus 334 ---p-a~~~~vvwwi~E~r~---------------~yf~----------r~k~vl~rvk~lIflSes~~k~w~~~~~-~~ 383 (663)
+ ....+++..+|.... .++. .-+..+.+++.++++|+...+..++... ..
T Consensus 164 ~~~~~~~~~~~V~TiHn~~~qg~~~~~~~~~~~~~~~~~~~~~~~~~~n~lk~~i~~ad~VitVS~~~a~ei~~~~~~~~ 243 (489)
T PRK14098 164 ADHEFFKDIKTVLTIHNVYRQGVLPFKVFQKLLPEEVCSGLHREGDEVNMLYTGVEHADLLTTTSPRYAEEIAGDGEEAF 243 (489)
T ss_pred hhccccCCCCEEEEcCCCcccCCCCHHHHHHhCCHHhhhhhhhcCCcccHHHHHHHhcCcceeeCHHHHHHhCcCCCCCc
Confidence 1 123466777775321 0010 1123456789999999987776432100 01
Q ss_pred ccc-----CCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCC--CCEEEEEEecCCCCC
Q 006050 384 KLK-----LRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTD--QDMLVLSLSSINPGK 456 (663)
Q Consensus 384 ~i~-----l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~--~~~lVl~VGri~p~K 456 (663)
++. ...++.+||||||.+.+..... ......|+.+.+. .+...+..+++++|++. +.++|+++||+.++|
T Consensus 244 gl~~~l~~~~~kl~~I~NGID~~~~~p~~d--~~~~~~~~~~~~~-~k~~~k~~l~~~lgl~~~~~~~~i~~vgRl~~~K 320 (489)
T PRK14098 244 GLDKVLEERKMRLHGILNGIDTRQWNPSTD--KLIKKRYSIERLD-GKLENKKALLEEVGLPFDEETPLVGVIINFDDFQ 320 (489)
T ss_pred ChHHHHHhcCCCeeEEeCCccccccCCccc--ccccccCCcchhh-hHHHHHHHHHHHhCCCCccCCCEEEEeccccccC
Confidence 221 1346889999998875432211 1111234444332 23345678899999974 568999999999999
Q ss_pred CHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCccccccc
Q 006050 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (663)
Q Consensus 457 GqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~ 536 (663)
|+++|++|+..+.+. +.
T Consensus 321 G~d~li~a~~~l~~~--~~------------------------------------------------------------- 337 (489)
T PRK14098 321 GAELLAESLEKLVEL--DI------------------------------------------------------------- 337 (489)
T ss_pred cHHHHHHHHHHHHhc--Cc-------------------------------------------------------------
Confidence 999999999988542 11
Q ss_pred CCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc-
Q 006050 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT- 615 (663)
Q Consensus 537 ~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~- 615 (663)
-++++|+ |+ ..| ++.|+++++++ +++|.|+|..+
T Consensus 338 -------------------------------------~lvivG~-G~----~~~-~~~l~~l~~~~--~~~V~~~g~~~~ 372 (489)
T PRK14098 338 -------------------------------------QLVICGS-GD----KEY-EKRFQDFAEEH--PEQVSVQTEFTD 372 (489)
T ss_pred -------------------------------------EEEEEeC-CC----HHH-HHHHHHHHHHC--CCCEEEEEecCH
Confidence 0267786 32 123 45588888876 57899999876
Q ss_pred -hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 616 -RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 616 -dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.+..+|++||+||+||+ .|+||++.+||||||+|+|+++++++.+
T Consensus 373 ~~~~~~~a~aDi~l~PS~--~E~~Gl~~lEAma~G~ppVv~~~GGl~d 418 (489)
T PRK14098 373 AFFHLAIAGLDMLLMPGK--IESCGMLQMFAMSYGTIPVAYAGGGIVE 418 (489)
T ss_pred HHHHHHHHhCCEEEeCCC--CCCchHHHHHHHhCCCCeEEecCCCCce
Confidence 46899999999999999 9999999999999999999999999853
No 43
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=99.90 E-value=2.2e-21 Score=207.41 Aligned_cols=281 Identities=17% Similarity=0.123 Sum_probs=180.6
Q ss_pred EEEEeCCCCCC-CHHHHHHHHHHHHHHC--CCeEEEEEEcCCCCChhHH----------hcCCeEEEeC--CC---C---
Q 006050 245 FILIFHELSMT-GAPLSMMELATELLSC--GATVSAVVLSKRGGLMPEL----------ARRKIKVLED--RG---E--- 303 (663)
Q Consensus 245 ILLI~heLs~g-GAp~smmeLA~~L~s~--G~~V~vVvLs~~GgL~~eL----------~~~gIkVl~~--~~---~--- 303 (663)
|.|+=+.++.| |||+++++.+.+|++. |++|.+.+-.....-...+ ...+++++.. .. .
T Consensus 3 ~~f~hp~~~~ggg~ervl~~a~~~l~~~~~~~~v~i~t~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 82 (419)
T cd03806 3 VGFFHPYCNAGGGGERVLWCAVRALQKRYPNNIVVIYTGDLDATPEEILEKVESRFNIELDRPRIVFFLLKYRKLVEAST 82 (419)
T ss_pred EEEECCCCCCCCCchHHHHHHHHHHHHhCCCcEEEEECCCCCCCHHHHHHHHHHhcCeecCCCceEEEEecceeeecccc
Confidence 45566677777 9999999999999999 7777766532211100111 1133442221 10 0
Q ss_pred -ch--------------hhh--hcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEee------hhh-----------
Q 006050 304 -PS--------------FKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIME------NRR----------- 349 (663)
Q Consensus 304 -~s--------------fk~--~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E------~r~----------- 349 (663)
.. ++. ..+||++|.++.....+.- ...++ ..++++++|. +..
T Consensus 83 ~~r~~~~~~~~~~~~~~~~~~~~~~pDv~i~~~g~~~~~~~--~~~~~--~~~~i~y~h~P~~~~d~l~~~~~~~~~~~~ 158 (419)
T cd03806 83 YPRFTLLGQALGSMILGLEALLKLVPDIFIDTMGYPFTYPL--VRLLG--GCPVGAYVHYPTISTDMLQKVRSREASYNN 158 (419)
T ss_pred CCceeeHHHHHHHHHHHHHHHHhcCCCEEEEcCCcccHHHH--HHHhc--CCeEEEEecCCcchHHHHHHHhhccccccC
Confidence 00 111 2369999888643322221 11122 3356766662 110
Q ss_pred ---------------hh---HH-HHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhcccc
Q 006050 350 ---------------EY---FD-RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTC 410 (663)
Q Consensus 350 ---------------~y---f~-r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~ 410 (663)
.| |+ -.+..+..++.+++.|+.+.++..+. . ....++.+|+++++.+.+...
T Consensus 159 ~~~~~~~~~~~~~k~~y~~~~~~~~~~~~~~aD~ii~~S~~~~~~~~~~----~-~~~~~~~vi~~gvd~~~~~~~---- 229 (419)
T cd03806 159 SATIARSPVLSKAKLLYYRLFAFLYGLAGSFADVVMVNSTWTRNHIRSL----W-KRNTKPSIVYPPCDVEELLKL---- 229 (419)
T ss_pred ccchhccchHHHHHHHHHHHHHHHHHHHhhcCCEEEECCHHHHHHHHHH----h-CcCCCcEEEcCCCCHHHhccc----
Confidence 00 00 11233567899999999888774332 1 112368999999875422100
Q ss_pred CCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccc
Q 006050 411 SLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKK 490 (663)
Q Consensus 411 slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~ 490 (663)
+ . ....++.+|+++|++.+.||++++|+|++.+.++.|...+
T Consensus 230 ----~-----~----------------~~~~~~~~il~vgr~~~~K~~~~li~A~~~l~~~~~~~~~------------- 271 (419)
T cd03806 230 ----P-----L----------------DEKTRENQILSIAQFRPEKNHPLQLRAFAKLLKRLPEEIK------------- 271 (419)
T ss_pred ----c-----c----------------ccccCCcEEEEEEeecCCCCHHHHHHHHHHHHHhCccccc-------------
Confidence 0 0 0123467899999999999999999999999876654200
Q ss_pred ccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEeccccc
Q 006050 491 SSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQ 570 (663)
Q Consensus 491 ~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~ 570 (663)
..++
T Consensus 272 -------------------------------------------------------------------~~~~--------- 275 (419)
T cd03806 272 -------------------------------------------------------------------EKIK--------- 275 (419)
T ss_pred -------------------------------------------------------------------CceE---------
Confidence 0001
Q ss_pred ccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHc
Q 006050 571 QQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAF 648 (663)
Q Consensus 571 ~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~ 648 (663)
.+++|+... .++.+|.+ .|+++++.++++++|+|+|..+ ++..+|+.||++++||. .|+||++++|||||
T Consensus 276 ----lvivG~~~~-~~~~~~~~-~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~adv~v~~s~--~E~Fgi~~lEAMa~ 347 (419)
T cd03806 276 ----LVLIGSCRN-EDDEKRVE-DLKLLAKELGLEDKVEFVVNAPFEELLEELSTASIGLHTMW--NEHFGIGVVEYMAA 347 (419)
T ss_pred ----EEEEcCCCC-cccHHHHH-HHHHHHHHhCCCCeEEEecCCCHHHHHHHHHhCeEEEECCc--cCCcccHHHHHHHc
Confidence 266776322 23345544 4899999999999999999865 89999999999999999 89999999999999
Q ss_pred CCCEEEeCCCCc
Q 006050 649 GVPMLEAQKKLL 660 (663)
Q Consensus 649 GlPVVatd~~~l 660 (663)
|+|||+++.++.
T Consensus 348 G~pvIa~~~ggp 359 (419)
T cd03806 348 GLIPLAHASGGP 359 (419)
T ss_pred CCcEEEEcCCCC
Confidence 999999998763
No 44
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.90 E-value=4.5e-21 Score=187.35 Aligned_cols=280 Identities=21% Similarity=0.245 Sum_probs=184.6
Q ss_pred eEEEEeCCCCC--CCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhH------HhcCCeEEEeCCCC----c-------
Q 006050 244 KFILIFHELSM--TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE------LARRKIKVLEDRGE----P------- 304 (663)
Q Consensus 244 KILLI~heLs~--gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~e------L~~~gIkVl~~~~~----~------- 304 (663)
|||+|++.... ||++..+.+++++|.++||+|.+++.......... -...++++...... .
T Consensus 1 kIl~i~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (394)
T cd03794 1 KILILSQYFPPELGGGAFRTTELAEELVKRGHEVTVITGSPNYPSGKIYKGYKREEVDGVRVHRVPLPPYKKNGLLKRLL 80 (394)
T ss_pred CEEEEecccCCccCCcceeHHHHHHHHHhCCceEEEEecCCCcccccccccceEEecCCeEEEEEecCCCCccchHHHHH
Confidence 68999998765 89999999999999999999999875543322211 12346665422110 0
Q ss_pred ---hh-------h--hhcCccEEEECch-hhHHHHHHHHHhCCCCCccEEEEEeehhhh-----------------hHHH
Q 006050 305 ---SF-------K--TSMKADLVIAGSA-VCATWIDQYITRFPAGGSQVVWWIMENRRE-----------------YFDR 354 (663)
Q Consensus 305 ---sf-------k--~~~k~DLVianSa-v~aswi~~yi~~~pa~~~~vvwwi~E~r~~-----------------yf~r 354 (663)
++ . ...++|+||+++. .........+... ...++++++|+.... +...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~D~v~~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (394)
T cd03794 81 NYLSFALSALLALLKRRRRPDVIIATSPPLLIALAALLLARL--KGAPFVLEVRDLWPESAVALGLLKNGSLLYRLLRKL 158 (394)
T ss_pred hhhHHHHHHHHHHHhcccCCCEEEEcCChHHHHHHHHHHHHh--cCCCEEEEehhhcchhHHHccCccccchHHHHHHHH
Confidence 00 0 2457999999862 2222222222221 144577777753111 1111
Q ss_pred HHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHH
Q 006050 355 AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVR 434 (663)
Q Consensus 355 ~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR 434 (663)
.+..+..++.++++|+...+.+. ..++. ..+..++|++++.+..... .. ... +
T Consensus 159 ~~~~~~~~d~vi~~s~~~~~~~~----~~~~~-~~~~~~i~~~~~~~~~~~~--------------~~-------~~~-~ 211 (394)
T cd03794 159 ERLIYRRADAIVVISPGMREYLV----RRGVP-PEKISVIPNGVDLELFKPP--------------PA-------DES-L 211 (394)
T ss_pred HHHHHhcCCEEEEECHHHHHHHH----hcCCC-cCceEEcCCCCCHHHcCCc--------------cc-------hhh-h
Confidence 23456788999999998776643 22332 2468899999976532110 00 001 3
Q ss_pred HHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccccccc
Q 006050 435 KEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLS 514 (663)
Q Consensus 435 ~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~ 514 (663)
.+.....+..+++++|++.+.||++.+++|+..+.+. ++.
T Consensus 212 ~~~~~~~~~~~i~~~G~~~~~k~~~~l~~~~~~l~~~-~~~--------------------------------------- 251 (394)
T cd03794 212 RKELGLDDKFVVLYAGNIGRAQGLDTLLEAAALLKDR-PDI--------------------------------------- 251 (394)
T ss_pred hhccCCCCcEEEEEecCcccccCHHHHHHHHHHHhhc-CCe---------------------------------------
Confidence 4456667788999999999999999999999998654 331
Q ss_pred ccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHH
Q 006050 515 SNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEI 594 (663)
Q Consensus 515 ~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~ 594 (663)
+ .+++|. |. . .+.
T Consensus 252 ----------------------------------------------~-------------l~i~G~-~~---~----~~~ 264 (394)
T cd03794 252 ----------------------------------------------R-------------FLIVGD-GP---E----KEE 264 (394)
T ss_pred ----------------------------------------------E-------------EEEeCC-cc---c----HHH
Confidence 0 255665 32 1 222
Q ss_pred HHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCC-----CcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 595 LEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGET-----FGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~-----FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+..++...++ ++|.|+|..+ ++..+|++||++++||. .|+ +|.+++||||||+|||+++.++..+
T Consensus 265 ~~~~~~~~~~-~~v~~~g~~~~~~~~~~~~~~di~i~~~~--~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~ 336 (394)
T cd03794 265 LKELAKALGL-DNVTFLGRVPKEELPELLAAADVGLVPLK--PGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE 336 (394)
T ss_pred HHHHHHHcCC-CcEEEeCCCChHHHHHHHHhhCeeEEecc--CcccccccCchHHHHHHHCCCcEEEecCCCchh
Confidence 4445555666 5799999875 89999999999999998 665 4889999999999999999987653
No 45
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.89 E-value=2.6e-21 Score=195.19 Aligned_cols=269 Identities=20% Similarity=0.186 Sum_probs=178.4
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCC----C-------------chhhhh
Q 006050 247 LIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG----E-------------PSFKTS 309 (663)
Q Consensus 247 LI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~----~-------------~sfk~~ 309 (663)
+++++.-..+++..+.++++.|. |++|.+++....+....+....++.++.... . ..+...
T Consensus 3 ~~~~~~~~~~~e~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (367)
T cd05844 3 LIFRPLLLAPSETFVRNQAEALR--RFRPVYVGGRRLGPAPLGALAVRLADLAGGKAGLRLGALRLLTGSAPQLRRLLRR 80 (367)
T ss_pred EEEeCCCCCCchHHHHHHHHhcc--cCCcEEEEeeccCCCCCcccceeeeecccchhHHHHHHHHhccccccHHHHHHHh
Confidence 44455556669999999999994 8888877755544433333334444331100 0 001234
Q ss_pred cCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh------h-------hHHHHHHHHhcCCEEEEecHHHHHHH
Q 006050 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------E-------YFDRAKLVLDRVKLLVFLSESQTKQW 376 (663)
Q Consensus 310 ~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~------~-------yf~r~k~vl~rvk~lIflSes~~k~w 376 (663)
.++|+||++....+.++. .+... .+.++++++|+... . +......++..++.++++|+...+..
T Consensus 81 ~~~dvvh~~~~~~~~~~~-~~~~~--~~~p~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~~~~~~ 157 (367)
T cd05844 81 HRPDLVHAHFGFDGVYAL-PLARR--LGVPLVVTFHGFDATTSLALLLRSRWALYARRRRRLARRAALFIAVSQFIRDRL 157 (367)
T ss_pred hCCCEEEeccCchHHHHH-HHHHH--cCCCEEEEEeCccccccchhhcccchhHHHHHHHHHHHhcCEEEECCHHHHHHH
Confidence 689999998643332222 12111 12345555553210 0 11112345677899999999877764
Q ss_pred HHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCC
Q 006050 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (663)
Q Consensus 377 ~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~K 456 (663)
.. .+++ ..++.++|+|++.+.+. +.. ...+.+.++++|++.+.|
T Consensus 158 ~~----~~~~-~~~i~vi~~g~d~~~~~--------------~~~-----------------~~~~~~~i~~~G~~~~~K 201 (367)
T cd05844 158 LA----LGFP-PEKVHVHPIGVDTAKFT--------------PAT-----------------PARRPPRILFVGRFVEKK 201 (367)
T ss_pred HH----cCCC-HHHeEEecCCCCHHhcC--------------CCC-----------------CCCCCcEEEEEEeecccc
Confidence 32 3443 23578899998754321 000 013456899999999999
Q ss_pred CHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCccccccc
Q 006050 457 GQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNL 536 (663)
Q Consensus 457 GqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~ 536 (663)
|++.+++|+..+.++.|+.
T Consensus 202 ~~~~li~a~~~l~~~~~~~------------------------------------------------------------- 220 (367)
T cd05844 202 GPLLLLEAFARLARRVPEV------------------------------------------------------------- 220 (367)
T ss_pred ChHHHHHHHHHHHHhCCCe-------------------------------------------------------------
Confidence 9999999999997765542
Q ss_pred CCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc-
Q 006050 537 LSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT- 615 (663)
Q Consensus 537 ~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~- 615 (663)
-++++|. |+ + ++.++.+++++|+.++|.|+|..+
T Consensus 221 -------------------------------------~l~ivG~-g~------~-~~~~~~~~~~~~~~~~v~~~g~~~~ 255 (367)
T cd05844 221 -------------------------------------RLVIIGD-GP------L-LAALEALARALGLGGRVTFLGAQPH 255 (367)
T ss_pred -------------------------------------EEEEEeC-ch------H-HHHHHHHHHHcCCCCeEEECCCCCH
Confidence 0256675 32 3 344888899999999999999985
Q ss_pred -hHHHHHHHccEEEEcCCC----CCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 616 -RVASLYSAADVYVINSQG----LGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 616 -dv~~lysaADV~V~pS~~----~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
++..+|++||++|+||.. ..|+||++++||||||+|||+++.++..+
T Consensus 256 ~~l~~~~~~ad~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~~~~e 307 (367)
T cd05844 256 AEVRELMRRARIFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHGGIPE 307 (367)
T ss_pred HHHHHHHHhCCEEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCCCchh
Confidence 799999999999999962 25999999999999999999999988754
No 46
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=99.89 E-value=3.5e-21 Score=191.46 Aligned_cols=275 Identities=19% Similarity=0.166 Sum_probs=182.4
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCCh--hHHhcCCeEEEeCCCC-------chhh---hhcC
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM--PELARRKIKVLEDRGE-------PSFK---TSMK 311 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~--~eL~~~gIkVl~~~~~-------~sfk---~~~k 311 (663)
||+++++.+. .|++..+.++++.|.++||+|.++++....... ......+..+...... ..+. ...+
T Consensus 1 ki~~~~~~~~-~~~~~~~~~~~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (355)
T cd03799 1 KIAYLVKEFP-RLSETFILREILALEAAGHEVEIFSLRPPEDTLVHPEDRAELARTRYLARSLALLAQALVLARELRRLG 79 (355)
T ss_pred CEEEECCCCC-CcchHHHHHHHHHHHhCCCeEEEEEecCcccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 6888888874 448899999999999999999999876543211 1111111111000000 0011 1368
Q ss_pred ccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhh---HHHHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCC
Q 006050 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREY---FDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLR 388 (663)
Q Consensus 312 ~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~y---f~r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~ 388 (663)
+|+||+++.....++..+..... +.++++.+|.....+ ....+..+..++.+++.|+...+.+.++. +.. .
T Consensus 80 ~Dii~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~s~~~~~~l~~~~---~~~-~ 153 (355)
T cd03799 80 IDHIHAHFGTTPATVAMLASRLG--GIPYSFTAHGKDIFRSPDAIDLDEKLARADFVVAISEYNRQQLIRLL---GCD-P 153 (355)
T ss_pred CCEEEECCCCchHHHHHHHHHhc--CCCEEEEEecccccccCchHHHHHHHhhCCEEEECCHHHHHHHHHhc---CCC-c
Confidence 99999987533333332222221 334455555321111 01335567789999999998777654431 222 2
Q ss_pred CCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHh
Q 006050 389 SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLM 468 (663)
Q Consensus 389 s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l 468 (663)
.++.++|++++.+.+... . .....+...|+++|++.+.||++.+++|+..+
T Consensus 154 ~~~~vi~~~~d~~~~~~~--------------~---------------~~~~~~~~~i~~~g~~~~~k~~~~l~~~~~~l 204 (355)
T cd03799 154 DKIHVVHCGVDLERFPPR--------------P---------------PPPPGEPLRILSVGRLVEKKGLDYLLEALALL 204 (355)
T ss_pred ccEEEEeCCcCHHHcCCc--------------c---------------ccccCCCeEEEEEeeeccccCHHHHHHHHHHH
Confidence 468899999976532100 0 01234567899999999999999999999998
Q ss_pred HHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCc
Q 006050 469 IEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNT 548 (663)
Q Consensus 469 ~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~ 548 (663)
..+.++.
T Consensus 205 ~~~~~~~------------------------------------------------------------------------- 211 (355)
T cd03799 205 KDRGIDF------------------------------------------------------------------------- 211 (355)
T ss_pred hhcCCCe-------------------------------------------------------------------------
Confidence 6553331
Q ss_pred cccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccE
Q 006050 549 DAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADV 626 (663)
Q Consensus 549 ~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV 626 (663)
-.+++|. +. . .+.+..+++.++++++|.|+|..+ ++..+|++||+
T Consensus 212 -------------------------~l~i~G~-~~---~----~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~adi 258 (355)
T cd03799 212 -------------------------RLDIVGD-GP---L----RDELEALIAELGLEDRVTLLGAKSQEEVRELLRAADL 258 (355)
T ss_pred -------------------------EEEEEEC-Cc---c----HHHHHHHHHHcCCCCeEEECCcCChHHHHHHHHhCCE
Confidence 0256675 32 1 233667778889999999999985 89999999999
Q ss_pred EEEcCCCCC------CCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 627 YVINSQGLG------ETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 627 ~V~pS~~~~------E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+++||. . |+||++++||||||+|||+++.++..+
T Consensus 259 ~l~~s~--~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~~ 298 (355)
T cd03799 259 FVLPSV--TAADGDREGLPVVLMEAMAMGLPVISTDVSGIPE 298 (355)
T ss_pred EEecce--ecCCCCccCccHHHHHHHHcCCCEEecCCCCcch
Confidence 999998 7 999999999999999999999987653
No 47
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.89 E-value=2.5e-21 Score=186.00 Aligned_cols=280 Identities=24% Similarity=0.288 Sum_probs=189.0
Q ss_pred eEEEEeCCCCC--CCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEe----CC---CC---------ch
Q 006050 244 KFILIFHELSM--TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE----DR---GE---------PS 305 (663)
Q Consensus 244 KILLI~heLs~--gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~----~~---~~---------~s 305 (663)
||++|.+.... ||+...+..++.+|.+.||+|.+++........... ........ .. .. ..
T Consensus 1 kI~ii~~~~~~~~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (374)
T cd03801 1 KILLVTPEYPPSVGGAERHVLELARALAARGHEVTVLTPGDGGLPDEEE-VGGIVVVRPPPLLRVRRLLLLLLLALRLRR 79 (374)
T ss_pred CeeEEecccCCccCcHhHHHHHHHHHHHhcCceEEEEecCCCCCCceee-ecCcceecCCcccccchhHHHHHHHHHHHH
Confidence 68888888753 799999999999999999999998765433221111 11111110 00 00 00
Q ss_pred hhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhh------------hHHHHHHHHhcCCEEEEecHHHH
Q 006050 306 FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE------------YFDRAKLVLDRVKLLVFLSESQT 373 (663)
Q Consensus 306 fk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~------------yf~r~k~vl~rvk~lIflSes~~ 373 (663)
+....++|+|+.+......+.. ..... ...++++++|..... +.......+..++.++++|+...
T Consensus 80 ~~~~~~~Dii~~~~~~~~~~~~-~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~s~~~~ 156 (374)
T cd03801 80 LLRRERFDVVHAHDWLALLAAA-LAARL--LGIPLVLTVHGLEFGRPGNELGLLLKLARALERRALRRADRIIAVSEATR 156 (374)
T ss_pred HhhhcCCcEEEEechhHHHHHH-HHHHh--cCCcEEEEeccchhhccccchhHHHHHHHHHHHHHHHhCCEEEEecHHHH
Confidence 1124579999998754433221 12222 234566677654321 11223455678899999999877
Q ss_pred HHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCC
Q 006050 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (663)
Q Consensus 374 k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~ 453 (663)
+.+... ......+..++|++++.... .+.. ...+.......+.+.|+++|++.
T Consensus 157 ~~~~~~----~~~~~~~~~~i~~~~~~~~~--------------~~~~---------~~~~~~~~~~~~~~~i~~~g~~~ 209 (374)
T cd03801 157 EELREL----GGVPPEKITVIPNGVDTERF--------------RPAP---------RAARRRLGIPEDEPVILFVGRLV 209 (374)
T ss_pred HHHHhc----CCCCCCcEEEecCccccccc--------------Cccc---------hHHHhhcCCcCCCeEEEEecchh
Confidence 764432 21112468899999865421 1110 12344556667889999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccc
Q 006050 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (663)
Q Consensus 454 p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 533 (663)
+.||++.+++|+..+..+.|+.
T Consensus 210 ~~k~~~~~i~~~~~~~~~~~~~---------------------------------------------------------- 231 (374)
T cd03801 210 PRKGVDLLLEALAKLRKEYPDV---------------------------------------------------------- 231 (374)
T ss_pred hhcCHHHHHHHHHHHhhhcCCe----------------------------------------------------------
Confidence 9999999999999986654431
Q ss_pred cccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCC
Q 006050 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (663)
Q Consensus 534 k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~ 613 (663)
-.+++|. +. + .+.+..++++.++.++|.|+|.
T Consensus 232 ----------------------------------------~l~i~G~-~~------~-~~~~~~~~~~~~~~~~v~~~g~ 263 (374)
T cd03801 232 ----------------------------------------RLVIVGD-GP------L-REELEALAAELGLGDRVTFLGF 263 (374)
T ss_pred ----------------------------------------EEEEEeC-cH------H-HHHHHHHHHHhCCCcceEEEec
Confidence 0255663 22 2 3447777888899999999999
Q ss_pred c--chHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 614 ~--~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
. .++..+|+.||++++||. .|+||.+++||||||+|||+++.+++.+
T Consensus 264 ~~~~~~~~~~~~~di~i~~~~--~~~~~~~~~Ea~~~g~pvI~~~~~~~~~ 312 (374)
T cd03801 264 VPDEDLPALYAAADVFVLPSL--YEGFGLVLLEAMAAGLPVVASDVGGIPE 312 (374)
T ss_pred cChhhHHHHHHhcCEEEecch--hccccchHHHHHHcCCcEEEeCCCChhH
Confidence 9 599999999999999999 7999999999999999999999877654
No 48
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=99.89 E-value=2.3e-21 Score=227.20 Aligned_cols=200 Identities=17% Similarity=0.232 Sum_probs=133.2
Q ss_pred HHHHhcCCEEEEecHHHHH-HHHHHh--H-----------hhccc----CCCCcEEeecCcchhhhhhhccccCCC---C
Q 006050 356 KLVLDRVKLLVFLSESQTK-QWLTWC--E-----------EEKLK----LRSQPAVVPLSVNDELAFVAGFTCSLN---T 414 (663)
Q Consensus 356 k~vl~rvk~lIflSes~~k-~w~~~~--~-----------~~~i~----l~s~~~VVp~gVndela~vagi~~sln---t 414 (663)
..++..++.+|+.|....+ +|.-+- . ..++. ..+++.|||+||+.+.|....-..... .
T Consensus 376 e~~l~~Ad~VIasT~qE~~eq~~lY~~~~~~~~~~~~~~~~~gv~~~g~~~~ri~VIPpGVD~~~F~P~~~~~~~~~~~~ 455 (1050)
T TIGR02468 376 ELSLDASEIVITSTRQEIEEQWGLYDGFDVILERKLRARARRGVSCYGRFMPRMAVIPPGMEFSHIVPHDGDMDGETEGN 455 (1050)
T ss_pred HHHHHhcCEEEEeCHHHHHHHHHHhccCCchhhhhhhhhhcccccccccCCCCeEEeCCCCcHHHccCCCccccchhccc
Confidence 4557889999999877654 454321 0 01111 123789999999987654321000000 0
Q ss_pred C--CCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccc
Q 006050 415 P--TSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSS 492 (663)
Q Consensus 415 p--~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~ 492 (663)
+ ...+. ......++. +...++.++|+++||+.+.||++.||+||..+.+..+..
T Consensus 456 ~~~~~~~~------~~~~~~l~r-~~~~pdkpvIL~VGRL~p~KGi~~LIeAf~~L~~l~~~~----------------- 511 (1050)
T TIGR02468 456 EEHPAKPD------PPIWSEIMR-FFTNPRKPMILALARPDPKKNITTLVKAFGECRPLRELA----------------- 511 (1050)
T ss_pred cccccccc------chhhHHHHh-hcccCCCcEEEEEcCCccccCHHHHHHHHHHhHhhccCC-----------------
Confidence 0 00000 001122333 345678889999999999999999999999985422110
Q ss_pred ccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEeccccccc
Q 006050 493 LTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQ 572 (663)
Q Consensus 493 ~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~K 572 (663)
T Consensus 512 -------------------------------------------------------------------------------- 511 (1050)
T TIGR02468 512 -------------------------------------------------------------------------------- 511 (1050)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceEEEEeecCCCC----CChhHHHHHHHHHHHhCCCCCcEEEcCCc--chHHHHHHHc----cEEEEcCCCCCCCCcHHH
Q 006050 573 ALKILIGSVGSKS----NKVPYVKEILEFLSQHSNLSKAMLWTPAT--TRVASLYSAA----DVYVINSQGLGETFGRVT 642 (663)
Q Consensus 573 dlklliG~~g~~~----n~~~y~k~~L~~l~~~~gLs~~V~~~G~~--~dv~~lysaA----DV~V~pS~~~~E~FG~Vi 642 (663)
++.+++|...... ...++..+ +..+++++++.++|.|+|+. ++++.+|++| ||||+||. .|+||+++
T Consensus 512 nL~LIiG~gdd~d~l~~~~~~~l~~-L~~li~~lgL~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~--~EgFGLvl 588 (1050)
T TIGR02468 512 NLTLIMGNRDDIDEMSSGSSSVLTS-VLKLIDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAF--IEPFGLTL 588 (1050)
T ss_pred CEEEEEecCchhhhhhccchHHHHH-HHHHHHHhCCCCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcc--cCCCCHHH
Confidence 1234555421100 01133344 77899999999999999985 4899999988 69999999 99999999
Q ss_pred HHHHHcCCCEEEeCCCCccC
Q 006050 643 IEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 643 iEAMA~GlPVVatd~~~l~~ 662 (663)
+||||||+|||+|+++++.+
T Consensus 589 LEAMAcGlPVVASdvGG~~E 608 (1050)
T TIGR02468 589 IEAAAHGLPMVATKNGGPVD 608 (1050)
T ss_pred HHHHHhCCCEEEeCCCCcHH
Confidence 99999999999999998754
No 49
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.89 E-value=5.3e-21 Score=188.22 Aligned_cols=271 Identities=19% Similarity=0.239 Sum_probs=173.5
Q ss_pred eEEEEeCCCC--CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEE--eC----------CCCchh---
Q 006050 244 KFILIFHELS--MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--ED----------RGEPSF--- 306 (663)
Q Consensus 244 KILLI~heLs--~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl--~~----------~~~~sf--- 306 (663)
||++|++... .||++..+.+|+.+|.+.||+|.+++...... .. .....+.+. .. .....+
T Consensus 1 kIl~i~~~~~p~~~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (364)
T cd03814 1 RIAIVTDTFLPQVNGVVRTLQRLVEHLRARGHEVLVIAPGPFRE-SE-GPARVVPVPSVPLPGYPEIRLALPPRRRVRRL 78 (364)
T ss_pred CeEEEecccCccccceehHHHHHHHHHHHCCCEEEEEeCCchhh-cc-CCCCceeecccccCcccceEecccchhhHHHH
Confidence 6788876664 38999999999999999999999887443221 11 000111110 00 000111
Q ss_pred hhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhH-------------HHHHHHHhcCCEEEEecHHHH
Q 006050 307 KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYF-------------DRAKLVLDRVKLLVFLSESQT 373 (663)
Q Consensus 307 k~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf-------------~r~k~vl~rvk~lIflSes~~ 373 (663)
....++|+||+++.....+....+.. ....++++++|.....+. ...+.+...++.+++.|+...
T Consensus 79 ~~~~~pdii~~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~s~~~~ 156 (364)
T cd03814 79 LDAFAPDVVHIATPGPLGLAALRAAR--RLGIPVVTSYHTDFPEYLRYYGLGPLSWLAWAYLRWFHNRADRVLVPSPSLA 156 (364)
T ss_pred HHhcCCCEEEEeccchhhHHHHHHHH--HcCCCEEEEEecChHHHhhhcccchHhHhhHHHHHHHHHhCCEEEeCCHHHH
Confidence 12458999998864333233222222 123345666665422211 112344567889999988776
Q ss_pred HHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCC
Q 006050 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (663)
Q Consensus 374 k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~ 453 (663)
+... ..+ ..+..++|+|++.+.+. |.... ...+++++ ..+..+++++|++.
T Consensus 157 ~~~~----~~~---~~~~~~~~~g~~~~~~~----------~~~~~-----------~~~~~~~~-~~~~~~i~~~G~~~ 207 (364)
T cd03814 157 DELR----ARG---FRRVRLWPRGVDTELFH----------PRRRD-----------EALRARLG-PPDRPVLLYVGRLA 207 (364)
T ss_pred HHHh----ccC---CCceeecCCCccccccC----------ccccc-----------HHHHHHhC-CCCCeEEEEEeccc
Confidence 6321 111 23578889998754321 10000 12345555 56678899999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccc
Q 006050 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (663)
Q Consensus 454 p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 533 (663)
+.||++.+++|+..+.++ ++.
T Consensus 208 ~~k~~~~~i~~~~~l~~~-~~~---------------------------------------------------------- 228 (364)
T cd03814 208 PEKNLEALLDADLPLRRR-PPV---------------------------------------------------------- 228 (364)
T ss_pred cccCHHHHHHHHHHhhhc-CCc----------------------------------------------------------
Confidence 999999999999998655 431
Q ss_pred cccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCC
Q 006050 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (663)
Q Consensus 534 k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~ 613 (663)
-.+++|. ++ + ++.++ +..++|.|+|.
T Consensus 229 ----------------------------------------~l~i~G~-~~------~-~~~~~------~~~~~v~~~g~ 254 (364)
T cd03814 229 ----------------------------------------RLVIVGD-GP------A-RARLE------ARYPNVHFLGF 254 (364)
T ss_pred ----------------------------------------eEEEEeC-Cc------h-HHHHh------ccCCcEEEEec
Confidence 0256675 32 1 11122 45689999996
Q ss_pred c--chHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 614 ~--~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
. .++..+|++||++++||. .|+||++++||||||+|||+++.++..+
T Consensus 255 ~~~~~~~~~~~~~d~~l~~s~--~e~~~~~~lEa~a~g~PvI~~~~~~~~~ 303 (364)
T cd03814 255 LDGEELAAAYASADVFVFPSR--TETFGLVVLEAMASGLPVVAPDAGGPAD 303 (364)
T ss_pred cCHHHHHHHHHhCCEEEECcc--cccCCcHHHHHHHcCCCEEEcCCCCchh
Confidence 4 489999999999999998 9999999999999999999999987643
No 50
>PLN02949 transferase, transferring glycosyl groups
Probab=99.89 E-value=1.4e-20 Score=205.60 Aligned_cols=283 Identities=14% Similarity=0.109 Sum_probs=179.1
Q ss_pred CCeEEEEeCCCCCC-CHHHHHHHHHHHHHHCCCeEEEEEEcCC-CCChhH-----HhcCCeEE------EeC--------
Q 006050 242 SRKFILIFHELSMT-GAPLSMMELATELLSCGATVSAVVLSKR-GGLMPE-----LARRKIKV------LED-------- 300 (663)
Q Consensus 242 ~kKILLI~heLs~g-GAp~smmeLA~~L~s~G~~V~vVvLs~~-GgL~~e-----L~~~gIkV------l~~-------- 300 (663)
+++|.++=++++.| |||+++.+.+.+|+++|+++.+++.+.. +.-.++ ..+.+|++ +..
T Consensus 33 ~~~v~f~HP~~~~ggG~ERvl~~a~~~l~~~~~~~~v~iyt~~~d~~~~~~l~~~~~~~~i~~~~~~~~v~l~~~~~~~~ 112 (463)
T PLN02949 33 KRAVGFFHPYTNDGGGGERVLWCAVRAIQEENPDLDCVIYTGDHDASPDSLAARARDRFGVELLSPPKVVHLRKRKWIEE 112 (463)
T ss_pred CcEEEEECCCCCCCCChhhHHHHHHHHHHhhCCCCeEEEEcCCCCCCHHHHHHHHHhhcceecCCCceEEEecccccccc
Confidence 45677777777655 9999999999999999996666655532 111122 22445522 111
Q ss_pred CCCch--------------hhhhc-CccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehh-----------------
Q 006050 301 RGEPS--------------FKTSM-KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR----------------- 348 (663)
Q Consensus 301 ~~~~s--------------fk~~~-k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r----------------- 348 (663)
..... +.... ..|.|+..+.-.+.++. +.+. ...++++++|.-.
T Consensus 113 ~~~~~~t~~~~~~~~~~l~~~~~~~~~p~v~vDt~~~~~~~p--l~~~--~~~~v~~yvH~p~~~~dm~~~v~~~~~~~~ 188 (463)
T PLN02949 113 ETYPRFTMIGQSLGSVYLAWEALCKFTPLYFFDTSGYAFTYP--LARL--FGCKVVCYTHYPTISSDMISRVRDRSSMYN 188 (463)
T ss_pred ccCCceehHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccHHH--HHHh--cCCcEEEEEeCCcchHHHHHHHhhcccccC
Confidence 11000 11111 23445554432222221 1111 2456788888310
Q ss_pred ---------------hhhHHHHH----HHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccc
Q 006050 349 ---------------REYFDRAK----LVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFT 409 (663)
Q Consensus 349 ---------------~~yf~r~k----~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~ 409 (663)
..|+.... .....++.+++.|+.+.+...+. .+ .++++.+++++++.+.+. ..
T Consensus 189 ~~~~~a~~~~~~~~k~~Y~~~~~~l~~~~~~~ad~ii~nS~~t~~~l~~~---~~--~~~~i~vvyp~vd~~~~~--~~- 260 (463)
T PLN02949 189 NDASIARSFWLSTCKILYYRAFAWMYGLVGRCAHLAMVNSSWTKSHIEAL---WR--IPERIKRVYPPCDTSGLQ--AL- 260 (463)
T ss_pred ccchhhccchhHHHHHHHHHHHHHHHHHHcCCCCEEEECCHHHHHHHHHH---cC--CCCCeEEEcCCCCHHHcc--cC-
Confidence 01211111 11256788999999887775331 11 234678899988754210 00
Q ss_pred cCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccc
Q 006050 410 CSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRK 489 (663)
Q Consensus 410 ~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~ 489 (663)
+. .-+.+...++++|++.|.||++++|+||+.+.++.+.. .++
T Consensus 261 ---------~~-----------------~~~~~~~~il~vGR~~~~Kg~~llI~A~~~l~~~~~~~-~~~---------- 303 (463)
T PLN02949 261 ---------PL-----------------ERSEDPPYIISVAQFRPEKAHALQLEAFALALEKLDAD-VPR---------- 303 (463)
T ss_pred ---------Cc-----------------cccCCCCEEEEEEeeeccCCHHHHHHHHHHHHHhcccc-CCC----------
Confidence 00 00134567899999999999999999999987643321 000
Q ss_pred cccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccc
Q 006050 490 KSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGK 569 (663)
Q Consensus 490 ~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~ 569 (663)
.+
T Consensus 304 ----------------------------------------------------------------------~~-------- 305 (463)
T PLN02949 304 ----------------------------------------------------------------------PK-------- 305 (463)
T ss_pred ----------------------------------------------------------------------cE--------
Confidence 01
Q ss_pred cccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHH
Q 006050 570 QQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMA 647 (663)
Q Consensus 570 ~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA 647 (663)
++++|+... .++.+|.++ |+.++++++++++|.|+|..+ ++..+|+.||++|+||. .|+||++++||||
T Consensus 306 -----LvIvG~~~~-~~~~~~~~e-L~~la~~l~L~~~V~f~g~v~~~el~~ll~~a~~~v~~s~--~E~FGivvlEAMA 376 (463)
T PLN02949 306 -----LQFVGSCRN-KEDEERLQK-LKDRAKELGLDGDVEFHKNVSYRDLVRLLGGAVAGLHSMI--DEHFGISVVEYMA 376 (463)
T ss_pred -----EEEEeCCCC-cccHHHHHH-HHHHHHHcCCCCcEEEeCCCCHHHHHHHHHhCcEEEeCCc--cCCCChHHHHHHH
Confidence 267776422 223456555 889999999999999999985 89999999999999998 9999999999999
Q ss_pred cCCCEEEeCCCCc
Q 006050 648 FGVPMLEAQKKLL 660 (663)
Q Consensus 648 ~GlPVVatd~~~l 660 (663)
||+|||+++++|.
T Consensus 377 ~G~PVIa~~~gGp 389 (463)
T PLN02949 377 AGAVPIAHNSAGP 389 (463)
T ss_pred cCCcEEEeCCCCC
Confidence 9999999999874
No 51
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.88 E-value=5.2e-21 Score=187.35 Aligned_cols=268 Identities=15% Similarity=0.132 Sum_probs=171.8
Q ss_pred eEEEEeCCCC---CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeC----CC--------------
Q 006050 244 KFILIFHELS---MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED----RG-------------- 302 (663)
Q Consensus 244 KILLI~heLs---~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~----~~-------------- 302 (663)
||++|.|... .||+++.+.+||++|.+.||+|.+++...... ........+..... ..
T Consensus 1 kIl~i~~~~~~~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (359)
T cd03823 1 RILVVNHLYPPRSVGGAEVVAHDLAEALAKRGHEVAVLTAGEDPP-RQDKEVIGVVVYGRPIDEVLRSALPRDLFHLSDY 79 (359)
T ss_pred CeeEEcccCCcccccchHHHHHHHHHHHHhcCCceEEEeCCCCCC-CcccccccceeeccccccccCCCchhhhhHHHhc
Confidence 6889988875 37999999999999999999999987543322 11111122222111 00
Q ss_pred -C----c---hhhhhcCccEEEECchhhHHHHH-HHHHhCCCCCccEEEEEeehhhhhHHHHHHHHhcCCEEEEecHHHH
Q 006050 303 -E----P---SFKTSMKADLVIAGSAVCATWID-QYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQT 373 (663)
Q Consensus 303 -~----~---sfk~~~k~DLVianSav~aswi~-~yi~~~pa~~~~vvwwi~E~r~~yf~r~k~vl~rvk~lIflSes~~ 373 (663)
. . .+....++|+||+++........ ..... ...++++.+|+...... .........+.++++|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~dii~~~~~~~~~~~~~~~~~~---~~~~~i~~~hd~~~~~~-~~~~~~~~~d~ii~~s~~~~ 155 (359)
T cd03823 80 DNPAVVAEFARLLEDFRPDVVHFHHLQGLGVSILRAARD---RGIPIVLTLHDYWLICP-RQGLFKKGGDAVIAPSRFLL 155 (359)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEECCccchHHHHHHHHHh---cCCCEEEEEeeeeeecc-hhhhhccCCCEEEEeCHHHH
Confidence 0 0 01124589999998742221111 11111 12455666665321111 11112234488899999877
Q ss_pred HHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCC
Q 006050 374 KQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSIN 453 (663)
Q Consensus 374 k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~ 453 (663)
+.+.. .+.. ..+..++|++++.+... +.. . +.+++.++|+++|++.
T Consensus 156 ~~~~~----~~~~-~~~~~vi~n~~~~~~~~--------------~~~--------------~-~~~~~~~~i~~~G~~~ 201 (359)
T cd03823 156 DRYVA----NGLF-AEKISVIRNGIDLDRAK--------------RPR--------------R-APPGGRLRFGFIGQLT 201 (359)
T ss_pred HHHHH----cCCC-ccceEEecCCcChhhcc--------------ccc--------------c-CCCCCceEEEEEecCc
Confidence 66443 3322 34689999998764321 000 0 3456778999999999
Q ss_pred CCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccc
Q 006050 454 PGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (663)
Q Consensus 454 p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 533 (663)
+.||++.+++|+..+.+ ++.
T Consensus 202 ~~k~~~~li~~~~~l~~--~~~---------------------------------------------------------- 221 (359)
T cd03823 202 PHKGVDLLLEAFKRLPR--GDI---------------------------------------------------------- 221 (359)
T ss_pred cccCHHHHHHHHHHHHh--cCc----------------------------------------------------------
Confidence 99999999999999855 221
Q ss_pred cccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCC
Q 006050 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (663)
Q Consensus 534 k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~ 613 (663)
-.+++|.... . .+ ..... +..++|.++|.
T Consensus 222 ----------------------------------------~l~i~G~~~~---~-~~----~~~~~---~~~~~v~~~g~ 250 (359)
T cd03823 222 ----------------------------------------ELVIVGNGLE---L-EE----ESYEL---EGDPRVEFLGA 250 (359)
T ss_pred ----------------------------------------EEEEEcCchh---h-hH----HHHhh---cCCCeEEEeCC
Confidence 0256675322 1 11 11111 56789999999
Q ss_pred c--chHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 614 T--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 614 ~--~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
. .++.++|++||++++||. ..|+||++++||||||+|||+|+.+++.+
T Consensus 251 ~~~~~~~~~~~~ad~~i~ps~-~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~e 300 (359)
T cd03823 251 YPQEEIDDFYAEIDVLVVPSI-WPENFPLVIREALAAGVPVIASDIGGMAE 300 (359)
T ss_pred CCHHHHHHHHHhCCEEEEcCc-ccCCCChHHHHHHHCCCCEEECCCCCHHH
Confidence 8 599999999999999995 36999999999999999999999987643
No 52
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=99.88 E-value=1.4e-20 Score=182.17 Aligned_cols=279 Identities=23% Similarity=0.330 Sum_probs=186.8
Q ss_pred EEEEeCCCCC---CCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcC----------CeEE--EeCCCC------
Q 006050 245 FILIFHELSM---TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR----------KIKV--LEDRGE------ 303 (663)
Q Consensus 245 ILLI~heLs~---gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~----------gIkV--l~~~~~------ 303 (663)
||+|.|.... ||++..+.+++.+|.+.|++|++++.............. .... ......
T Consensus 1 iLii~~~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (377)
T cd03798 1 ILVISSLYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPWGPKLLDLLKGRLVGVERLPVLLPVVPLLKGPLLYLLAA 80 (377)
T ss_pred CeEeccCCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCCCCCchhhcccccccccccccCcchhhccccchhHHHHH
Confidence 5778888875 899999999999999999999998865433221111000 0000 000000
Q ss_pred ---chhhh--hcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhh-------hHHHHHHHHhcCCEEEEecHH
Q 006050 304 ---PSFKT--SMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRRE-------YFDRAKLVLDRVKLLVFLSES 371 (663)
Q Consensus 304 ---~sfk~--~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~-------yf~r~k~vl~rvk~lIflSes 371 (663)
..+.. ..++|+|+++......++...+... ...++++++|..... +....+.++.+++.++++|+.
T Consensus 81 ~~~~~~l~~~~~~~dii~~~~~~~~~~~~~~~~~~--~~~~~i~~~h~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~s~~ 158 (377)
T cd03798 81 RALLKLLKLKRFRPDLIHAHFAYPDGFAAALLKRK--LGIPLVVTLHGSDVNLLPRKRLLRALLRRALRRADAVIAVSEA 158 (377)
T ss_pred HHHHHHHhcccCCCCEEEEeccchHHHHHHHHHHh--cCCCEEEEeecchhcccCchhhHHHHHHHHHhcCCeEEeCCHH
Confidence 01112 5689999988654443333333222 123566666653221 112234567789999999998
Q ss_pred HHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEec
Q 006050 372 QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS 451 (663)
Q Consensus 372 ~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGr 451 (663)
..+..... ++ ...++.++|++++..... +... . .. .+++...+.+.++++|+
T Consensus 159 ~~~~~~~~----~~-~~~~~~~i~~~~~~~~~~--------------~~~~-~------~~--~~~~~~~~~~~i~~~g~ 210 (377)
T cd03798 159 LADELKAL----GI-DPEKVTVIPNGVDTERFS--------------PADR-A------EA--RKLGLPEDKKVILFVGR 210 (377)
T ss_pred HHHHHHHh----cC-CCCceEEcCCCcCcccCC--------------Ccch-H------HH--HhccCCCCceEEEEecc
Confidence 77764432 22 234688999998754221 1110 0 00 44566778899999999
Q ss_pred CCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcc
Q 006050 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (663)
Q Consensus 452 i~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 531 (663)
+.+.||++.+++|+..+.++.++.
T Consensus 211 ~~~~k~~~~li~~~~~~~~~~~~~-------------------------------------------------------- 234 (377)
T cd03798 211 LVPRKGIDYLIEALARLLKKRPDV-------------------------------------------------------- 234 (377)
T ss_pred CccccCHHHHHHHHHHHHhcCCCe--------------------------------------------------------
Confidence 999999999999999986553331
Q ss_pred cccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEc
Q 006050 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT 611 (663)
Q Consensus 532 ~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~ 611 (663)
-.+++|. +. ..+.+..++++.++.++|.+.
T Consensus 235 ------------------------------------------~l~i~g~-~~-------~~~~~~~~~~~~~~~~~v~~~ 264 (377)
T cd03798 235 ------------------------------------------HLVIVGD-GP-------LREALEALAAELGLEDRVTFL 264 (377)
T ss_pred ------------------------------------------EEEEEcC-Cc-------chHHHHHHHHhcCCcceEEEe
Confidence 0144554 22 123366777888999999999
Q ss_pred CCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 612 PATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 612 G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
|..+ ++.++|+.||++++||. .|+||.+++||||||+|||+++.+++.
T Consensus 265 g~~~~~~~~~~~~~ad~~i~~~~--~~~~~~~~~Ea~~~G~pvI~~~~~~~~ 314 (377)
T cd03798 265 GAVPHEEVPAYYAAADVFVLPSL--REGFGLVLLEAMACGLPVVATDVGGIP 314 (377)
T ss_pred CCCCHHHHHHHHHhcCeeecchh--hccCChHHHHHHhcCCCEEEecCCChH
Confidence 9986 79999999999999999 899999999999999999999988764
No 53
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=99.88 E-value=1.5e-20 Score=216.15 Aligned_cols=320 Identities=13% Similarity=0.156 Sum_probs=187.4
Q ss_pred cCCccccccccCCCeEEEEeCCCC-----------CCCHHHHHHHHHHH--------HHHCCC----eEEEEEEcCCC--
Q 006050 230 CDRKGDFARFVWSRKFILIFHELS-----------MTGAPLSMMELATE--------LLSCGA----TVSAVVLSKRG-- 284 (663)
Q Consensus 230 c~~k~~~~~~~~~kKILLI~heLs-----------~gGAp~smmeLA~~--------L~s~G~----~V~vVvLs~~G-- 284 (663)
|.=..=++|..+.+||++|+..-+ .||.-.++.+||++ |+++|+ .|.++|-...+
T Consensus 243 ~~~e~f~~~~p~~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~~~~ 322 (784)
T TIGR02470 243 SVLEAFLGRIPMVFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIPDAE 322 (784)
T ss_pred hHHHHHHhhCCccceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCCCcc
Confidence 333444568888899988865542 36777789999997 479999 56676632221
Q ss_pred C--ChhHHh----cCCeEEEe--CCCC---------ch-----------------hhh--hcCccEEEECchhhHHHHHH
Q 006050 285 G--LMPELA----RRKIKVLE--DRGE---------PS-----------------FKT--SMKADLVIAGSAVCATWIDQ 328 (663)
Q Consensus 285 g--L~~eL~----~~gIkVl~--~~~~---------~s-----------------fk~--~~k~DLVianSav~aswi~~ 328 (663)
+ +.+.++ ..++.|+. .+.. .. +.. ..+||+||+|....+ ++..
T Consensus 323 ~~~~~~~~e~~~~~~~~~I~rvp~g~~~~~~~~~~i~k~~l~p~l~~f~~~~~~~~~~~~~~~pDlIHahy~d~g-lva~ 401 (784)
T TIGR02470 323 GTTCNQRLEKVYGTEHAWILRVPFRTENGIILRNWISRFEIWPYLETFAEDAEKEILAELQGKPDLIIGNYSDGN-LVAS 401 (784)
T ss_pred ccccccccccccCCCceEEEEecCCCCcccccccccCHHHHHHHHHHHHHHHHHHHHHhcCCCCCEEEECCCchH-HHHH
Confidence 1 111111 14555542 2111 00 000 236999999975332 2332
Q ss_pred HHHhCCCCCccEEEEEee---------------h-hhhhHH----HHHHHHhcCCEEEEecHHHHH-------HHHHH--
Q 006050 329 YITRFPAGGSQVVWWIME---------------N-RREYFD----RAKLVLDRVKLLVFLSESQTK-------QWLTW-- 379 (663)
Q Consensus 329 yi~~~pa~~~~vvwwi~E---------------~-r~~yf~----r~k~vl~rvk~lIflSes~~k-------~w~~~-- 379 (663)
.+++. .+.+ .+...|. . .+..|. ....+++.++.+|+.|..... ++...
T Consensus 402 lla~~-lgVP-~v~t~HsL~~~K~~~~g~~~~~~e~~~~~~~r~~ae~~~~~~AD~IItsT~qEi~~~~~~v~qY~s~~~ 479 (784)
T TIGR02470 402 LLARK-LGVT-QCTIAHALEKTKYPDSDIYWQEFEDKYHFSCQFTADLIAMNAADFIITSTYQEIAGTKDSVGQYESHQA 479 (784)
T ss_pred HHHHh-cCCC-EEEECCcchhhcccccccccccchhHHHhhhhhhHHHHHHhcCCEEEECcHHHhhhhhhhhhhhhhccc
Confidence 23211 1111 1111121 1 111222 123557789999998853211 11100
Q ss_pred ------hH-hhcccC-CCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhH------HHHHHHHHHhCC--CCCC
Q 006050 380 ------CE-EEKLKL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRN------LLRDSVRKEMGL--TDQD 443 (663)
Q Consensus 380 ------~~-~~~i~l-~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~------~lr~~vR~elGL--~~~~ 443 (663)
+. ..|+.. ++++.|||.|+|.+.++..... .......+. .-+...++.+|+ ..+.
T Consensus 480 ft~p~Ly~vvnGid~~~~Ki~VVpPGVD~~iF~P~~~~---------~~r~~~~~~~ie~ll~~~~~~~~~~G~l~d~~k 550 (784)
T TIGR02470 480 FTMPGLYRVVHGIDVFDPKFNIVSPGADESIYFPYSDK---------EKRLTNLHPEIEELLFSLEDNDEHYGYLKDPNK 550 (784)
T ss_pred ccccceeeeecCccCCcCCeEEECCCcChhhcCCCCch---------hhhhhhhhcchhhhccchhhHHHHhCCCCCCCC
Confidence 00 123432 3578899999998765432110 000000000 011234577886 5677
Q ss_pred EEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccc
Q 006050 444 MLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSE 523 (663)
Q Consensus 444 ~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~ 523 (663)
++|+++||+.+.||++.|++|+..+.+..+..
T Consensus 551 piIl~VGRL~~~KGid~LIeA~~~l~~l~~~~------------------------------------------------ 582 (784)
T TIGR02470 551 PIIFSMARLDRVKNLTGLVECYGRSPKLRELV------------------------------------------------ 582 (784)
T ss_pred cEEEEEeCCCccCCHHHHHHHHHHhHhhCCCe------------------------------------------------
Confidence 89999999999999999999998763221110
Q ss_pred cccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCC--CCCCh---hHHHHHHHHH
Q 006050 524 SFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGS--KSNKV---PYVKEILEFL 598 (663)
Q Consensus 524 ~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~--~~n~~---~y~k~~L~~l 598 (663)
-++++|.... .+.+. ++.++ +..+
T Consensus 583 --------------------------------------------------~LVIVGGg~~~~~s~d~ee~~~i~~-L~~l 611 (784)
T TIGR02470 583 --------------------------------------------------NLVVVAGKLDAKESKDREEQAEIEK-MHNL 611 (784)
T ss_pred --------------------------------------------------EEEEEeCCcccccccchhHHHHHHH-HHHH
Confidence 0256664221 11111 23334 7889
Q ss_pred HHhCCCCCcEEEcCCc---chHHHHHH----HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 599 SQHSNLSKAMLWTPAT---TRVASLYS----AADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 599 ~~~~gLs~~V~~~G~~---~dv~~lys----aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
++++|+.++|.|+|+. .+..++|+ ++||||+||. .|+||++++||||||+|||+|++||+.+
T Consensus 612 a~~~gL~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~--~EpFGLvvLEAMAcGlPVVAT~~GG~~E 680 (784)
T TIGR02470 612 IDQYQLHGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPAL--YEAFGLTVLEAMTCGLPTFATRFGGPLE 680 (784)
T ss_pred HHHhCCCCeEEEccCcCCcccHHHHHHHhhccCcEEEECCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHH
Confidence 9999999999999975 25667775 2479999999 9999999999999999999999999864
No 54
>PLN02846 digalactosyldiacylglycerol synthase
Probab=99.88 E-value=5.1e-21 Score=209.63 Aligned_cols=271 Identities=16% Similarity=0.115 Sum_probs=172.0
Q ss_pred CCCeEEEEeCCC--CCCCHHHHHHHHHHHHHHCC-CeEEEEEEcCCCC---------------ChhH-----HhcCCeEE
Q 006050 241 WSRKFILIFHEL--SMTGAPLSMMELATELLSCG-ATVSAVVLSKRGG---------------LMPE-----LARRKIKV 297 (663)
Q Consensus 241 ~~kKILLI~heL--s~gGAp~smmeLA~~L~s~G-~~V~vVvLs~~Gg---------------L~~e-----L~~~gIkV 297 (663)
++|||.+++... .++|...++..++.+|.+.| |+|++|....... ..+| -....|-.
T Consensus 3 ~~mrIaivTdt~lP~vnGva~s~~~~a~~L~~~G~heV~vvaP~~~~~~~~~~~~~~~~f~~~~~~e~~~~~~~~~~v~r 82 (462)
T PLN02846 3 KKQHIAIFTTASLPWMTGTAVNPLFRAAYLAKDGDREVTLVIPWLSLKDQKLVYPNKITFSSPSEQEAYVRQWLEERISF 82 (462)
T ss_pred CCCEEEEEEcCCCCCCCCeeccHHHHHHHHHhcCCcEEEEEecCCccccccccccccccccCchhhhhhhhhhccCeEEE
Confidence 468999887665 47999999999999999999 7999987432110 0011 00111111
Q ss_pred ---EeCCCCch-----------------hhhhcCccEEEECchhhHHHH--HHHHHhCCCCCccEEEEEeehhhhhHHHH
Q 006050 298 ---LEDRGEPS-----------------FKTSMKADLVIAGSAVCATWI--DQYITRFPAGGSQVVWWIMENRREYFDRA 355 (663)
Q Consensus 298 ---l~~~~~~s-----------------fk~~~k~DLVianSav~aswi--~~yi~~~pa~~~~vvwwi~E~r~~yf~r~ 355 (663)
++...... .....++|+||+++.....|+ ....... . .. ++...|.+-.+|+...
T Consensus 83 ~~s~~~p~yp~r~~~~~r~~~~~~~i~~~l~~~~pDVIHv~tP~~LG~~~~g~~~~~k-~-~~-vV~tyHT~y~~Y~~~~ 159 (462)
T PLN02846 83 LPKFSIKFYPGKFSTDKRSILPVGDISETIPDEEADIAVLEEPEHLTWYHHGKRWKTK-F-RL-VIGIVHTNYLEYVKRE 159 (462)
T ss_pred ecccccccCcccccccccccCChHHHHHHHHhcCCCEEEEcCchhhhhHHHHHHHHhc-C-Cc-EEEEECCChHHHHHHh
Confidence 11111111 112467999999987666665 2222211 1 22 5555677655554321
Q ss_pred -----H--------HHH--hcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChh
Q 006050 356 -----K--------LVL--DRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPE 420 (663)
Q Consensus 356 -----k--------~vl--~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~e 420 (663)
+ ..+ .+++.++..|....+. . . ...+.+.||+.+++. +.
T Consensus 160 ~~g~~~~~l~~~~~~~~~r~~~d~vi~pS~~~~~l----~-~-------~~i~~v~GVd~~~f~--------------~~ 213 (462)
T PLN02846 160 KNGRVKAFLLKYINSWVVDIYCHKVIRLSAATQDY----P-R-------SIICNVHGVNPKFLE--------------IG 213 (462)
T ss_pred ccchHHHHHHHHHHHHHHHHhcCEEEccCHHHHHH----h-h-------CEEecCceechhhcC--------------CC
Confidence 1 111 2367778778644331 1 1 122234677765331 11
Q ss_pred hHHHhhHHHHHHHHHHhCCCCC--CEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccc
Q 006050 421 KMREKRNLLRDSVRKEMGLTDQ--DMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHH 498 (663)
Q Consensus 421 k~~ekr~~lr~~vR~elGL~~~--~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~ 498 (663)
. |. .++..+ .++ .++++++||+.+.||++.||+|++.+....|+.
T Consensus 214 ~----~~-----~~~~~~-~~~~~~~~~l~vGRL~~eK~~~~Li~a~~~l~~~~~~~----------------------- 260 (462)
T PLN02846 214 K----LK-----LEQQKN-GEQAFTKGAYYIGKMVWSKGYKELLKLLHKHQKELSGL----------------------- 260 (462)
T ss_pred c----cc-----HhhhcC-CCCCcceEEEEEecCcccCCHHHHHHHHHHHHhhCCCe-----------------------
Confidence 1 01 122222 333 357899999999999999999999986554441
Q ss_pred ccccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEE
Q 006050 499 LRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILI 578 (663)
Q Consensus 499 lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~Kdlklli 578 (663)
+ ++++
T Consensus 261 --------------------------------------------------------------~-------------l~iv 265 (462)
T PLN02846 261 --------------------------------------------------------------E-------------VDLY 265 (462)
T ss_pred --------------------------------------------------------------E-------------EEEE
Confidence 0 2667
Q ss_pred eecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 579 GSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 579 G~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
|+ |+ .++.|+.+++++++...| |+|. .+..++|+++||||+||. .|+||+|++||||||+|||+++++
T Consensus 266 Gd-Gp-------~~~~L~~~a~~l~l~~~v-f~G~-~~~~~~~~~~DvFv~pS~--~Et~g~v~lEAmA~G~PVVa~~~~ 333 (462)
T PLN02846 266 GS-GE-------DSDEVKAAAEKLELDVRV-YPGR-DHADPLFHDYKVFLNPST--TDVVCTTTAEALAMGKIVVCANHP 333 (462)
T ss_pred CC-Cc-------cHHHHHHHHHhcCCcEEE-ECCC-CCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCcEEEecCC
Confidence 76 44 144488899999987555 8886 456689999999999999 999999999999999999999998
Q ss_pred Cc
Q 006050 659 LL 660 (663)
Q Consensus 659 ~l 660 (663)
+.
T Consensus 334 ~~ 335 (462)
T PLN02846 334 SN 335 (462)
T ss_pred Cc
Confidence 74
No 55
>PLN02275 transferase, transferring glycosyl groups
Probab=99.86 E-value=1.3e-19 Score=189.65 Aligned_cols=284 Identities=14% Similarity=0.073 Sum_probs=172.1
Q ss_pred CCCCCHHHHHHHHHHHHHHCCC-eEEEEEEcCCCCChhHHhcCCeEEEeCCC--C-------------chh---------
Q 006050 252 LSMTGAPLSMMELATELLSCGA-TVSAVVLSKRGGLMPELARRKIKVLEDRG--E-------------PSF--------- 306 (663)
Q Consensus 252 Ls~gGAp~smmeLA~~L~s~G~-~V~vVvLs~~GgL~~eL~~~gIkVl~~~~--~-------------~sf--------- 306 (663)
+...|++..|.+++..|.++|+ +|++++....+...+.....||+|...+. . .++
T Consensus 12 ~~~~g~~~r~~~~~~~l~~~~~~~v~vi~~~~~~~~~~~~~~~~v~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (371)
T PLN02275 12 LGDFGRSPRMQYHALSLARQASFQVDVVAYGGSEPIPALLNHPSIHIHLMVQPRLLQRLPRVLYALALLLKVAIQFLMLL 91 (371)
T ss_pred ecCCCCCHHHHHHHHHHHhcCCceEEEEEecCCCCCHHHhcCCcEEEEECCCcccccccccchHHHHHHHHHHHHHHHHH
Confidence 3567888889999999999875 79999876555444555566788875531 1 011
Q ss_pred ----hhhcCccEEEECch--hhHHHHHHHHHhCCCCCccEEEEEeehhhh--------------hHH-HHHHHHhcCCEE
Q 006050 307 ----KTSMKADLVIAGSA--VCATWIDQYITRFPAGGSQVVWWIMENRRE--------------YFD-RAKLVLDRVKLL 365 (663)
Q Consensus 307 ----k~~~k~DLVianSa--v~aswi~~yi~~~pa~~~~vvwwi~E~r~~--------------yf~-r~k~vl~rvk~l 365 (663)
....++|+||+++. +.+.++...+... . ..+++.++|..... .+. -.+.+.+.++.+
T Consensus 92 ~~~~~~~~~~DvV~~~~~~~~~~~~~~~~~~~~-~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~ad~i 169 (371)
T PLN02275 92 WFLCVKIPRPDVFLVQNPPSVPTLAVVKLACWL-R-RAKFVIDWHNFGYTLLALSLGRSHPLVRLYRWYERHYGKMADGH 169 (371)
T ss_pred HHHHhhCCCCCEEEEeCCCCcHHHHHHHHHHHH-h-CCCEEEEcCCccHHHHhcccCCCCHHHHHHHHHHHHHHhhCCEE
Confidence 12368999999752 2222222222211 1 22344445542100 011 123345678999
Q ss_pred EEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEE
Q 006050 366 VFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDML 445 (663)
Q Consensus 366 IflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~l 445 (663)
|++|+...++..+ ..+++ +.+||+++ ++.+ . |.... ..+. .+...+
T Consensus 170 i~~S~~~~~~l~~---~~g~~----i~vi~n~~-~~~f--~--------~~~~~---------------~~~~-~~~~~~ 215 (371)
T PLN02275 170 LCVTKAMQHELDQ---NWGIR----ATVLYDQP-PEFF--R--------PASLE---------------IRLR-PNRPAL 215 (371)
T ss_pred EECCHHHHHHHHH---hcCCC----eEEECCCC-HHHc--C--------cCCch---------------hccc-CCCcEE
Confidence 9999988776432 12332 67889874 2221 1 10000 0011 134467
Q ss_pred EEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccc
Q 006050 446 VLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESF 525 (663)
Q Consensus 446 Vl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~ 525 (663)
++++|++.+.||++.|++|+..+..+.... .++. .++
T Consensus 216 i~~~grl~~~k~~~~li~a~~~l~~~~~~~--~~~~---------------------~~~-------------------- 252 (371)
T PLN02275 216 VVSSTSWTPDEDFGILLEAAVMYDRRVAAR--LNES---------------------DSA-------------------- 252 (371)
T ss_pred EEEeCceeccCCHHHHHHHHHHHHhhhhhc--cccc---------------------ccc--------------------
Confidence 889999999999999999999875332211 0000 000
Q ss_pred cccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccce-EEEEeecCCCCCChhHHHHHHHHHHHhCCC
Q 006050 526 TQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQAL-KILIGSVGSKSNKVPYVKEILEFLSQHSNL 604 (663)
Q Consensus 526 ~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~Kdl-klliG~~g~~~n~~~y~k~~L~~l~~~~gL 604 (663)
+ ..+ ....++ ++++|+ |+ .++.++.+++++|+
T Consensus 253 -~--~~~------------------------------------~~~~~i~l~ivG~-G~-------~~~~l~~~~~~~~l 285 (371)
T PLN02275 253 -S--GKQ------------------------------------SLYPRLLFIITGK-GP-------QKAMYEEKISRLNL 285 (371)
T ss_pred -c--ccc------------------------------------ccCCCeEEEEEeC-CC-------CHHHHHHHHHHcCC
Confidence 0 000 000012 266676 44 14458889999999
Q ss_pred CCcEEEcC-C--cchHHHHHHHccEEEEcCC-CCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 605 SKAMLWTP-A--TTRVASLYSAADVYVINSQ-GLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 605 s~~V~~~G-~--~~dv~~lysaADV~V~pS~-~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
++ |.|.+ . .++++.+|++||++|+|+. ..+|+||++++||||||+|||+++.++..+
T Consensus 286 ~~-v~~~~~~~~~~~~~~~l~~aDv~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~gg~~e 346 (371)
T PLN02275 286 RH-VAFRTMWLEAEDYPLLLGSADLGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSYSCIGE 346 (371)
T ss_pred Cc-eEEEcCCCCHHHHHHHHHhCCEEEEeccccccccccHHHHHHHHCCCCEEEecCCChHH
Confidence 87 77654 4 4599999999999998642 226999999999999999999999988754
No 56
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.85 E-value=3.5e-20 Score=200.70 Aligned_cols=213 Identities=20% Similarity=0.208 Sum_probs=151.0
Q ss_pred cCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh-----h-----------------hHH-HHHHHHhcCCEEE
Q 006050 310 MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR-----E-----------------YFD-RAKLVLDRVKLLV 366 (663)
Q Consensus 310 ~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~-----~-----------------yf~-r~k~vl~rvk~lI 366 (663)
.++|+||+++...+.++...+... .+.++++..|.... . +|. ..+..+..++.++
T Consensus 172 ~~~dviH~~s~~~~g~~~~~~~~~--~~~p~I~t~Hg~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ad~Ii 249 (475)
T cd03813 172 PKADVYHAVSTGYAGLLGALAKAR--RGTPFLLTEHGIYTRERKIELLQADWEMSYFRRLWIRFFESLGRLAYQAADRIT 249 (475)
T ss_pred CCCCEEeccCcchHHHHHHHHHHH--hCCCEEEecCCccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 478999999753344444333322 13346666554200 0 011 1233457889999
Q ss_pred EecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEE
Q 006050 367 FLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLV 446 (663)
Q Consensus 367 flSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lV 446 (663)
++|+...+. ....+++ +.++.+||+|++.+.+. +... -...++.++|
T Consensus 250 ~~s~~~~~~----~~~~g~~-~~ki~vIpNgid~~~f~--------------~~~~--------------~~~~~~~~~i 296 (475)
T cd03813 250 TLYEGNRER----QIEDGAD-PEKIRVIPNGIDPERFA--------------PARR--------------ARPEKEPPVV 296 (475)
T ss_pred ecCHHHHHH----HHHcCCC-HHHeEEeCCCcCHHHcC--------------Cccc--------------cccCCCCcEE
Confidence 999876543 2334443 24678999999865321 1000 0224567899
Q ss_pred EEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccccccccccccccccccc
Q 006050 447 LSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFT 526 (663)
Q Consensus 447 l~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~ 526 (663)
+++|++.+.||++.|++|++.+.++.|+.
T Consensus 297 ~~vGrl~~~Kg~~~li~a~~~l~~~~p~~--------------------------------------------------- 325 (475)
T cd03813 297 GLIGRVVPIKDIKTFIRAAAIVRKKIPDA--------------------------------------------------- 325 (475)
T ss_pred EEEeccccccCHHHHHHHHHHHHHhCCCe---------------------------------------------------
Confidence 99999999999999999999998776652
Q ss_pred ccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCC
Q 006050 527 QLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSK 606 (663)
Q Consensus 527 ~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~ 606 (663)
-.+++|... ++.+|.++ ++++++++|+.+
T Consensus 326 -----------------------------------------------~l~IvG~g~---~~~~~~~e-~~~li~~l~l~~ 354 (475)
T cd03813 326 -----------------------------------------------EGWVIGPTD---EDPEYAEE-CRELVESLGLED 354 (475)
T ss_pred -----------------------------------------------EEEEECCCC---cChHHHHH-HHHHHHHhCCCC
Confidence 025667532 23456555 888999999999
Q ss_pred cEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 607 ~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+|.|+| ..++.++|++||++|+||. .|+||++++||||||+|||+|+++++.+
T Consensus 355 ~V~f~G-~~~v~~~l~~aDv~vlpS~--~Eg~p~~vlEAma~G~PVVatd~g~~~e 407 (475)
T cd03813 355 NVKFTG-FQNVKEYLPKLDVLVLTSI--SEGQPLVILEAMAAGIPVVATDVGSCRE 407 (475)
T ss_pred eEEEcC-CccHHHHHHhCCEEEeCch--hhcCChHHHHHHHcCCCEEECCCCChHH
Confidence 999999 7799999999999999999 9999999999999999999999988653
No 57
>PLN02501 digalactosyldiacylglycerol synthase
Probab=99.84 E-value=2.1e-19 Score=203.52 Aligned_cols=206 Identities=17% Similarity=0.133 Sum_probs=141.4
Q ss_pred hcCccEEEECchhhHHHH--HHHHHhCCCCCccEEEEEeehhhhhHHHHH-------------HHHhc--CCEEEEecHH
Q 006050 309 SMKADLVIAGSAVCATWI--DQYITRFPAGGSQVVWWIMENRREYFDRAK-------------LVLDR--VKLLVFLSES 371 (663)
Q Consensus 309 ~~k~DLVianSav~aswi--~~yi~~~pa~~~~vvwwi~E~r~~yf~r~k-------------~vl~r--vk~lIflSes 371 (663)
...+|+||+.+...-.|. ...++..- . +++--+|.+-.+|+.+.+ .++.+ ++.++++|..
T Consensus 432 ~f~PDVVHLatP~~LGw~~~Glr~ArKl--~-PVVasyHTny~eYl~~y~~g~L~~~llk~l~~~v~r~hcD~VIaPS~a 508 (794)
T PLN02501 432 SKDADIAILEEPEHLNWYHHGKRWTDKF--N-HVVGVVHTNYLEYIKREKNGALQAFFVKHINNWVTRAYCHKVLRLSAA 508 (794)
T ss_pred ccCCCEEEECCchhhccHHHHHHHHHHc--C-CeEEEEeCCcHHHHhHhcchhHHHHHHHHHHHHHHHhhCCEEEcCCHH
Confidence 458999999886544454 33333221 2 366667777666665321 12233 6888888865
Q ss_pred HHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEec
Q 006050 372 QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS 451 (663)
Q Consensus 372 ~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGr 451 (663)
+.+. +.+.....+|||.++ |.|.+- ...+.++|+......++++||
T Consensus 509 tq~L------------~~~vI~nVnGVDte~--------------F~P~~r--------~~~~r~lgi~~~~kgiLfVGR 554 (794)
T PLN02501 509 TQDL------------PKSVICNVHGVNPKF--------------LKIGEK--------VAEERELGQQAFSKGAYFLGK 554 (794)
T ss_pred HHHh------------cccceeecccccccc--------------cCCcch--------hHHHHhcCCccccCceEEEEc
Confidence 5421 111111114776543 333221 111256787665566899999
Q ss_pred CCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcc
Q 006050 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (663)
Q Consensus 452 i~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 531 (663)
+.+.||++.||+|++.+..+.|+.
T Consensus 555 La~EKGld~LLeAla~L~~~~pnv-------------------------------------------------------- 578 (794)
T PLN02501 555 MVWAKGYRELIDLLAKHKNELDGF-------------------------------------------------------- 578 (794)
T ss_pred ccccCCHHHHHHHHHHHHhhCCCe--------------------------------------------------------
Confidence 999999999999999986554431
Q ss_pred cccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEc
Q 006050 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWT 611 (663)
Q Consensus 532 ~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~ 611 (663)
-++++|+ |+ .++.|+.+++++++ .|.|+
T Consensus 579 ------------------------------------------rLvIVGD-GP-------~reeLe~la~eLgL--~V~FL 606 (794)
T PLN02501 579 ------------------------------------------NLDVFGN-GE-------DAHEVQRAAKRLDL--NLNFL 606 (794)
T ss_pred ------------------------------------------EEEEEcC-Cc-------cHHHHHHHHHHcCC--EEEec
Confidence 0266776 44 13447888888888 49999
Q ss_pred CCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 612 PATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 612 G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
|..+++..+|+++||||+||. .|+||+|++||||||+|||++++++..
T Consensus 607 G~~dd~~~lyasaDVFVlPS~--sEgFGlVlLEAMA~GlPVVATd~pG~e 654 (794)
T PLN02501 607 KGRDHADDSLHGYKVFINPSI--SDVLCTATAEALAMGKFVVCADHPSNE 654 (794)
T ss_pred CCCCCHHHHHHhCCEEEECCC--cccchHHHHHHHHcCCCEEEecCCCCc
Confidence 999999999999999999999 999999999999999999999998753
No 58
>PLN00142 sucrose synthase
Probab=99.84 E-value=2.9e-19 Score=205.99 Aligned_cols=66 Identities=23% Similarity=0.335 Sum_probs=57.7
Q ss_pred HHHHHHhCCCCCcEEEcCCcc------hHHHHHH-HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 595 LEFLSQHSNLSKAMLWTPATT------RVASLYS-AADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~------dv~~lys-aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+..+++++++.++|.|+|... ++..+|+ ++||||+||. .|+||++++||||||+|||+|++||+.+
T Consensus 631 L~~La~~lgL~~~V~flG~~~~~~~~~eLyr~iadaaDVfVlPS~--~EgFGLvvLEAMA~GlPVVATdvGG~~E 703 (815)
T PLN00142 631 MHSLIEKYNLKGQFRWIAAQTNRVRNGELYRYIADTKGAFVQPAL--YEAFGLTVVEAMTCGLPTFATCQGGPAE 703 (815)
T ss_pred HHHHHHHcCCCCcEEEcCCcCCcccHHHHHHHHHhhCCEEEeCCc--ccCCCHHHHHHHHcCCCEEEcCCCCHHH
Confidence 778899999999999999754 3455555 5799999999 9999999999999999999999999764
No 59
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=99.84 E-value=4.8e-19 Score=180.18 Aligned_cols=57 Identities=25% Similarity=0.386 Sum_probs=52.4
Q ss_pred CCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 603 NLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 603 gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
++.++|.|+|+.+ ++..+|++||++++||. |+||++++||||||+|||+++.++..+
T Consensus 239 ~~~~~V~~~g~~~~~~~~~~~~~ad~~v~ps~---e~~g~~~~Eama~G~Pvi~~~~~~~~e 297 (351)
T cd03804 239 KAGPNVTFLGRVSDEELRDLYARARAFLFPAE---EDFGIVPVEAMASGTPVIAYGKGGALE 297 (351)
T ss_pred hcCCCEEEecCCCHHHHHHHHHhCCEEEECCc---CCCCchHHHHHHcCCCEEEeCCCCCcc
Confidence 5678999999998 49999999999999995 999999999999999999999988764
No 60
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=99.83 E-value=3.9e-19 Score=186.16 Aligned_cols=266 Identities=12% Similarity=0.114 Sum_probs=165.0
Q ss_pred EEEEeCCCC---CCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChh---HHh--cCCeEEEeCCCC-------------
Q 006050 245 FILIFHELS---MTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP---ELA--RRKIKVLEDRGE------------- 303 (663)
Q Consensus 245 ILLI~heLs---~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~---eL~--~~gIkVl~~~~~------------- 303 (663)
||+++|.+- ..|+.+.+.+++++|.+. |+|+++++.....-.+ .+. -..+.+++....
T Consensus 1 iL~~~~~~P~P~~~G~~~r~~~~~~~L~~~-~~v~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 79 (397)
T TIGR03087 1 ILYLVHRIPYPPNKGDKIRSFHLLRHLAAR-HRVHLGTFVDDPEDWQYAAALRPLCEEVCVVPLDPRVARLRSLLGLLTG 79 (397)
T ss_pred CeeecCCCCCCCCCCCcEeHHHHHHHHHhc-CcEEEEEeCCCcccHHHHHHHHHHhheeEEeecCcHHHHHHHHhhhcCC
Confidence 578888775 368889999999999764 8999999875432221 121 123333322100
Q ss_pred ----------chhh-------hhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehh---------------hhh
Q 006050 304 ----------PSFK-------TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR---------------REY 351 (663)
Q Consensus 304 ----------~sfk-------~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r---------------~~y 351 (663)
..+. ...++|+||+++...+.++ .....+. +.++-.|... +.+
T Consensus 80 ~p~~~~~~~~~~~~~~l~~~~~~~~~D~v~~~~~~~~~~~----~~~~~~~-p~i~~~~d~~~~~~~~~~~~~~~~~~~~ 154 (397)
T TIGR03087 80 EPLSLPYYRSRRLARWVNALLAAEPVDAIVVFSSAMAQYV----TPHVRGV-PRIVDFVDVDSDKWLQYARTKRWPLRWI 154 (397)
T ss_pred CCCcchhhCCHHHHHHHHHHHhhCCCCEEEEeccccceec----cccccCC-CeEeehhhHHHHHHHHHHhccCcchhHH
Confidence 0000 1257899999875443322 1111111 2222222110 001
Q ss_pred HH--------HHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHH
Q 006050 352 FD--------RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMR 423 (663)
Q Consensus 352 f~--------r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ 423 (663)
+. -.+.++.+++.++++|+...+.+... ......++.+||+|++.+.+... ..
T Consensus 155 ~~~~~~~~~~~e~~~~~~ad~vi~~S~~~~~~l~~~----~~~~~~~v~vipngvd~~~f~~~--------------~~- 215 (397)
T TIGR03087 155 YRREGRLLLAYERAIAARFDAATFVSRAEAELFRRL----APEAAGRITAFPNGVDADFFSPD--------------RD- 215 (397)
T ss_pred HHHHHHHHHHHHHHHHhhCCeEEEcCHHHHHHHHHh----CCCCCCCeEEeecccchhhcCCC--------------cc-
Confidence 10 12345678999999999887764432 11123467899999986533110 00
Q ss_pred HhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHH----HHHHhHHhCCCCChhhhhhccccccccccccccccc
Q 006050 424 EKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVE----SAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHL 499 (663)
Q Consensus 424 ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLe----A~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~l 499 (663)
. .-.+..+..+|+++|++.+.||++.+++ ++..+.++.|+.
T Consensus 216 ~-----------~~~~~~~~~~ilf~G~l~~~k~~~~l~~~~~~~~~~l~~~~p~~------------------------ 260 (397)
T TIGR03087 216 Y-----------PNPYPPGKRVLVFTGAMDYWPNIDAVVWFAERVFPAVRARRPAA------------------------ 260 (397)
T ss_pred c-----------cCCCCCCCcEEEEEEecCCccCHHHHHHHHHHHHHHHHHHCCCc------------------------
Confidence 0 0012345678999999999999999884 555555544442
Q ss_pred cccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEe
Q 006050 500 RGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIG 579 (663)
Q Consensus 500 r~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG 579 (663)
-++++|
T Consensus 261 --------------------------------------------------------------------------~l~ivG 266 (397)
T TIGR03087 261 --------------------------------------------------------------------------EFYIVG 266 (397)
T ss_pred --------------------------------------------------------------------------EEEEEC
Confidence 026677
Q ss_pred ecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 580 SVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 580 ~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
. |+ . ++ ++. ++..++|+|+|..+++..+|++||++|+||+ .+|+||++++||||||+|||+|+.+
T Consensus 267 ~-g~----~---~~-~~~----l~~~~~V~~~G~v~~~~~~~~~adv~v~Ps~-~~eG~~~~~lEAma~G~PVV~t~~~ 331 (397)
T TIGR03087 267 A-KP----S---PA-VRA----LAALPGVTVTGSVADVRPYLAHAAVAVAPLR-IARGIQNKVLEAMAMAKPVVASPEA 331 (397)
T ss_pred C-CC----h---HH-HHH----hccCCCeEEeeecCCHHHHHHhCCEEEeccc-ccCCcccHHHHHHHcCCCEEecCcc
Confidence 5 32 0 11 333 3345679999999999999999999999996 3699999999999999999999864
No 61
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=99.81 E-value=1.2e-18 Score=192.17 Aligned_cols=161 Identities=17% Similarity=0.237 Sum_probs=124.5
Q ss_pred HhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhC
Q 006050 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (663)
Q Consensus 359 l~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elG 438 (663)
.+.++.+|++|+.+.+.........+.. .+++.++|+|+.+++.. +..
T Consensus 268 ~~~~D~iI~~S~~~~~~l~~~~~~~~~~-~~ki~viP~g~~~~~~~--------------~~~----------------- 315 (500)
T TIGR02918 268 ADYIDFFITATDIQNQILKNQFKKYYNI-EPRIYTIPVGSLDELQY--------------PEQ----------------- 315 (500)
T ss_pred hhhCCEEEECCHHHHHHHHHHhhhhcCC-CCcEEEEcCCCcccccC--------------ccc-----------------
Confidence 4568999999998887766544433332 34678999997543210 000
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccccccccccc
Q 006050 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (663)
Q Consensus 439 L~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~ 518 (663)
......|+++||+.+.||++.||+|+..+.++.|+.
T Consensus 316 -~r~~~~il~vGrl~~~Kg~~~li~A~~~l~~~~p~~------------------------------------------- 351 (500)
T TIGR02918 316 -ERKPFSIITASRLAKEKHIDWLVKAVVKAKKSVPEL------------------------------------------- 351 (500)
T ss_pred -ccCCeEEEEEeccccccCHHHHHHHHHHHHhhCCCe-------------------------------------------
Confidence 112457999999999999999999999998777652
Q ss_pred ccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHH
Q 006050 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFL 598 (663)
Q Consensus 519 ~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l 598 (663)
-++++|+ |+ .++.|+.+
T Consensus 352 -------------------------------------------------------~l~i~G~-G~-------~~~~l~~~ 368 (500)
T TIGR02918 352 -------------------------------------------------------TFDIYGE-GG-------EKQKLQKI 368 (500)
T ss_pred -------------------------------------------------------EEEEEEC-ch-------hHHHHHHH
Confidence 0256776 33 13458889
Q ss_pred HHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC-Ccc
Q 006050 599 SQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK-LLS 661 (663)
Q Consensus 599 ~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~-~l~ 661 (663)
++.+++.+.|.|+|.. ++.++|+.||+||+||. .|+||++++||||||+|||+|+++ +.+
T Consensus 369 i~~~~l~~~V~f~G~~-~~~~~~~~adv~v~pS~--~Egfgl~~lEAma~G~PVI~~dv~~G~~ 429 (500)
T TIGR02918 369 INENQAQDYIHLKGHR-NLSEVYKDYELYLSAST--SEGFGLTLMEAVGSGLGMIGFDVNYGNP 429 (500)
T ss_pred HHHcCCCCeEEEcCCC-CHHHHHHhCCEEEEcCc--cccccHHHHHHHHhCCCEEEecCCCCCH
Confidence 9999999999999975 79999999999999999 999999999999999999999986 554
No 62
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=99.81 E-value=3.8e-19 Score=188.25 Aligned_cols=268 Identities=18% Similarity=0.200 Sum_probs=180.6
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCC-----Cchh-------------hhhcCcc
Q 006050 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRG-----EPSF-------------KTSMKAD 313 (663)
Q Consensus 252 Ls~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~-----~~sf-------------k~~~k~D 313 (663)
.++||.|.++..|++.|.+.||.|.+++...+...-=.....|++|+.... ...| ....+..
T Consensus 12 P~~ggveshiy~lSq~li~lghkVvvithayg~r~girylt~glkVyylp~~v~~n~tT~ptv~~~~Pllr~i~lrE~I~ 91 (426)
T KOG1111|consen 12 PSTGGVESHIYALSQCLIRLGHKVVVITHAYGNRVGIRYLTNGLKVYYLPAVVGYNQTTFPTVFSDFPLLRPILLRERIE 91 (426)
T ss_pred cCCCChhhhHHHhhcchhhcCCeEEEEeccccCccceeeecCCceEEEEeeeeeecccchhhhhccCcccchhhhhhceE
Confidence 478999999999999999999999988866444221112234566653221 1111 1235788
Q ss_pred EEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHH--------HHHHhcCCEEEEecHHHHHHHHHHhHhhcc
Q 006050 314 LVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRA--------KLVLDRVKLLVFLSESQTKQWLTWCEEEKL 385 (663)
Q Consensus 314 LVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~--------k~vl~rvk~lIflSes~~k~w~~~~~~~~i 385 (663)
+||.|+++.+...+..+ |....+-+.++.-|+.-+. .+-. ..-+..++++||+|+...+.- ...-.+
T Consensus 92 ivhghs~fS~lahe~l~-hartMGlktVfTdHSlfGf-ad~~si~~n~ll~~sL~~id~~IcVshtskent---vlr~~L 166 (426)
T KOG1111|consen 92 IVHGHSPFSYLAHEALM-HARTMGLKTVFTDHSLFGF-ADIGSILTNKLLPLSLANIDRIICVSHTSKENT---VLRGAL 166 (426)
T ss_pred EEecCChHHHHHHHHHH-HHHhcCceEEEeccccccc-cchhhhhhcceeeeeecCCCcEEEEeecCCCce---EEEecc
Confidence 99999875543333332 2223346677766652210 0100 111456789999988643320 000111
Q ss_pred cCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCC-EEEEEEecCCCCCCHHHHHHH
Q 006050 386 KLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQD-MLVLSLSSINPGKGQLLLVES 464 (663)
Q Consensus 386 ~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~-~lVl~VGri~p~KGqdlLLeA 464 (663)
.+.++.+|||.+..+ .|.|...+ .+..+ ..|+.+||+-++||.|+|++.
T Consensus 167 -~p~kvsvIPnAv~~~--------------~f~P~~~~---------------~~S~~i~~ivv~sRLvyrKGiDll~~i 216 (426)
T KOG1111|consen 167 -APAKVSVIPNAVVTH--------------TFTPDAAD---------------KPSADIITIVVASRLVYRKGIDLLLEI 216 (426)
T ss_pred -CHhHeeeccceeecc--------------ccccCccc---------------cCCCCeeEEEEEeeeeeccchHHHHHH
Confidence 133567777776544 34443210 13444 788999999999999999999
Q ss_pred HHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccc
Q 006050 465 AQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTS 544 (663)
Q Consensus 465 ~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~ 544 (663)
+.++..+.|+.
T Consensus 217 Ip~vc~~~p~v--------------------------------------------------------------------- 227 (426)
T KOG1111|consen 217 IPSVCDKHPEV--------------------------------------------------------------------- 227 (426)
T ss_pred HHHHHhcCCCe---------------------------------------------------------------------
Confidence 99998887773
Q ss_pred cCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHH
Q 006050 545 IGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYS 622 (663)
Q Consensus 545 ~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lys 622 (663)
.++||.+|++..+ +++..+++.|.++|.++|..+ +|.+.|.
T Consensus 228 ------------------------------rfii~GDGPk~i~-------lee~lEk~~l~~rV~~lG~v~h~~Vr~vl~ 270 (426)
T KOG1111|consen 228 ------------------------------RFIIIGDGPKRID-------LEEMLEKLFLQDRVVMLGTVPHDRVRDVLV 270 (426)
T ss_pred ------------------------------eEEEecCCcccch-------HHHHHHHhhccCceEEecccchHHHHHHHh
Confidence 1344444775432 444556678999999999987 8999999
Q ss_pred HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 623 AADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 623 aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.-|+|+.||. .|+|+++++|||+||+|||+|++||+.+
T Consensus 271 ~G~IFlntSl--TEafc~~ivEAaScGL~VVsTrVGGIpe 308 (426)
T KOG1111|consen 271 RGDIFLNTSL--TEAFCMVIVEAASCGLPVVSTRVGGIPE 308 (426)
T ss_pred cCcEEeccHH--HHHHHHHHHHHHhCCCEEEEeecCCccc
Confidence 9999999999 9999999999999999999999999875
No 63
>PHA01630 putative group 1 glycosyl transferase
Probab=99.79 E-value=1.1e-17 Score=175.35 Aligned_cols=227 Identities=16% Similarity=0.162 Sum_probs=140.5
Q ss_pred HHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEE
Q 006050 264 LATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWW 343 (663)
Q Consensus 264 LA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvww 343 (663)
+-.+|...|++|.++-.. .|.. ..+ .. +++..+.++.....+. .+..+..+..+++-
T Consensus 19 ~~~~l~~~~~~~~~~~~~---~~~~----~~~-----------~~--~~~~~~~~~~~~~~~~---~~~~~~~~~~~v~e 75 (331)
T PHA01630 19 LEEHLKMLGHKVTVFEKP---TLTK----YQL-----------PP--GYPIYIYYTIFNSMLF---WKGIPHVGKNIVFE 75 (331)
T ss_pred HHHHHHHhCCeeEEEecc---chhh----hhc-----------CC--CCceeeehhhhhHHHH---HhhccccCCceEEE
Confidence 446788889988765311 1111 111 11 3344445554333222 23444445566665
Q ss_pred EeehhhhhHHHHHHH-HhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhH
Q 006050 344 IMENRREYFDRAKLV-LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKM 422 (663)
Q Consensus 344 i~E~r~~yf~r~k~v-l~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~ 422 (663)
+|...+....-.... ..+++.++++|+...+.+. ..++..+.++.+||+|++.+.+. +...
T Consensus 76 ~~~~~~l~~~~~~~~~~~~ad~ii~~S~~~~~~l~----~~g~~~~~~i~vIpNGVd~~~f~--------------~~~~ 137 (331)
T PHA01630 76 VADTDAISHTALYFFRNQPVDEIVVPSQWSKNAFY----TSGLKIPQPIYVIPHNLNPRMFE--------------YKPK 137 (331)
T ss_pred EEeechhhHHHHHHHhhccCCEEEECCHHHHHHHH----HcCCCCCCCEEEECCCCCHHHcC--------------CCcc
Confidence 555321111111233 4679999999998887743 34444344688999999865431 0000
Q ss_pred HHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccc
Q 006050 423 REKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGR 502 (663)
Q Consensus 423 ~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~ 502 (663)
+ .....+++++|++.++||++.||+|++.+.++.++.
T Consensus 138 -------------~---~~~~~vl~~~g~~~~~Kg~d~Li~A~~~l~~~~~~~--------------------------- 174 (331)
T PHA01630 138 -------------E---KPHPCVLAILPHSWDRKGGDIVVKIFHELQNEGYDF--------------------------- 174 (331)
T ss_pred -------------c---cCCCEEEEEeccccccCCHHHHHHHHHHHHhhCCCE---------------------------
Confidence 0 123556777889999999999999999997665542
Q ss_pred ccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecC
Q 006050 503 GLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVG 582 (663)
Q Consensus 503 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g 582 (663)
..+++|+ +
T Consensus 175 -----------------------------------------------------------------------~llivG~-~ 182 (331)
T PHA01630 175 -----------------------------------------------------------------------YFLIKSS-N 182 (331)
T ss_pred -----------------------------------------------------------------------EEEEEeC-c
Confidence 0255663 2
Q ss_pred CCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 583 SKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 583 ~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.. +..+ .++.+ +......+++..+|++||+||+||+ .|+||++++||||||+|||+|+++++++
T Consensus 183 ~~-------~~~l------~~~~~-~~~~v~~~~l~~~y~~aDv~v~pS~--~E~fgl~~lEAMA~G~PVIas~~gg~~E 246 (331)
T PHA01630 183 ML-------DPRL------FGLNG-VKTPLPDDDIYSLFAGCDILFYPVR--GGAFEIPVIEALALGLDVVVTEKGAWSE 246 (331)
T ss_pred cc-------chhh------ccccc-eeccCCHHHHHHHHHhCCEEEECCc--cccCChHHHHHHHcCCCEEEeCCCCchh
Confidence 10 1101 12322 2222334699999999999999999 9999999999999999999999998765
No 64
>PHA01633 putative glycosyl transferase group 1
Probab=99.79 E-value=6.3e-18 Score=178.76 Aligned_cols=166 Identities=16% Similarity=0.206 Sum_probs=119.9
Q ss_pred HHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHH
Q 006050 357 LVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKE 436 (663)
Q Consensus 357 ~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~e 436 (663)
.++.+-..+|++|+.+.+.. .+.|++. ..+|++|++.+.+ ++.. .....+|++
T Consensus 88 ~~m~~~~~vIavS~~t~~~L----~~~G~~~---~i~I~~GVD~~~f--------------~p~~------~~~~~~r~~ 140 (335)
T PHA01633 88 KYLLQDVKFIPNSKFSAENL----QEVGLQV---DLPVFHGINFKIV--------------ENAE------KLVPQLKQK 140 (335)
T ss_pred HHHhcCCEEEeCCHHHHHHH----HHhCCCC---ceeeeCCCChhhc--------------Cccc------hhhHHHHHH
Confidence 44555568899999887773 3345542 2457788875532 2211 011245666
Q ss_pred hCCC-CCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccc
Q 006050 437 MGLT-DQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSS 515 (663)
Q Consensus 437 lGL~-~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~ 515 (663)
++.. ++.++++++||+.++||+++|++|++.+.++.|+..
T Consensus 141 ~~~~~~~~~~i~~vGRl~~~KG~~~LI~A~~~L~~~~p~~~--------------------------------------- 181 (335)
T PHA01633 141 LDKDFPDTIKFGIVSGLTKRKNMDLMLQVFNELNTKYPDIA--------------------------------------- 181 (335)
T ss_pred hCcCCCCCeEEEEEeCCccccCHHHHHHHHHHHHHhCCCcc---------------------------------------
Confidence 6654 467889999999999999999999999987766520
Q ss_pred cccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceE-EEEeecCCCCCChhHHHHH
Q 006050 516 NELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALK-ILIGSVGSKSNKVPYVKEI 594 (663)
Q Consensus 516 ~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~Kdlk-lliG~~g~~~n~~~y~k~~ 594 (663)
+++. +++|. .
T Consensus 182 --------------------------------------------------------~~i~l~ivG~-----------~-- 192 (335)
T PHA01633 182 --------------------------------------------------------KKIHFFVISH-----------K-- 192 (335)
T ss_pred --------------------------------------------------------ccEEEEEEcH-----------H--
Confidence 0011 33342 0
Q ss_pred HHHHHHhCCCCCcEEEcC---C--cchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 595 LEFLSQHSNLSKAMLWTP---A--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G---~--~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
..++++++++|+|+| . ..++..+|++||+||+||. .|+||++++||||||+|||+|+++++.+
T Consensus 193 ---~~~~l~l~~~V~f~g~~G~~~~~dl~~~y~~aDifV~PS~--~EgfGlvlLEAMA~G~PVVas~~~~l~E 260 (335)
T PHA01633 193 ---QFTQLEVPANVHFVAEFGHNSREYIFAFYGAMDFTIVPSG--TEGFGMPVLESMAMGTPVIHQLMPPLDE 260 (335)
T ss_pred ---HHHHcCCCCcEEEEecCCCCCHHHHHHHHHhCCEEEECCc--cccCCHHHHHHHHcCCCEEEccCCCcee
Confidence 123467889999995 3 3489999999999999999 9999999999999999999999998765
No 65
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=99.77 E-value=2e-17 Score=169.19 Aligned_cols=157 Identities=20% Similarity=0.285 Sum_probs=121.7
Q ss_pred HhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhC
Q 006050 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (663)
Q Consensus 359 l~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elG 438 (663)
+.+++.+|+.|+.+.+.+..... ...++.++|+|++.+.... .. .
T Consensus 155 ~~~~d~ii~~s~~~~~~l~~~~~-----~~~~v~~ip~g~~~~~~~~--------------~~----------------~ 199 (372)
T cd04949 155 LDKVDGVIVATEQQKQDLQKQFG-----NYNPIYTIPVGSIDPLKLP--------------AQ----------------F 199 (372)
T ss_pred hhhCCEEEEccHHHHHHHHHHhC-----CCCceEEEcccccChhhcc--------------cc----------------h
Confidence 56788999999988777544321 1223779999987543210 00 0
Q ss_pred CCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccccccccccc
Q 006050 439 LTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNEL 518 (663)
Q Consensus 439 L~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~ 518 (663)
.......++++|++.+.||++.+++|+..+.++.|+.
T Consensus 200 ~~~~~~~i~~vgrl~~~K~~~~li~a~~~l~~~~~~~------------------------------------------- 236 (372)
T cd04949 200 KQRKPHKIITVARLAPEKQLDQLIKAFAKVVKQVPDA------------------------------------------- 236 (372)
T ss_pred hhcCCCeEEEEEccCcccCHHHHHHHHHHHHHhCCCc-------------------------------------------
Confidence 1134567899999999999999999999998877763
Q ss_pred ccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHH
Q 006050 519 SVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFL 598 (663)
Q Consensus 519 ~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l 598 (663)
-++++|. |+ .+..+..+
T Consensus 237 -------------------------------------------------------~l~i~G~-g~-------~~~~~~~~ 253 (372)
T cd04949 237 -------------------------------------------------------TLDIYGY-GD-------EEEKLKEL 253 (372)
T ss_pred -------------------------------------------------------EEEEEEe-Cc-------hHHHHHHH
Confidence 0255675 33 12336677
Q ss_pred HHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 599 SQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 599 ~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
++..++++.|.|+|+.+++..+|+.||++|+||. .|+||++++||||||+|||+++++
T Consensus 254 ~~~~~~~~~v~~~g~~~~~~~~~~~ad~~v~~S~--~Eg~~~~~lEAma~G~PvI~~~~~ 311 (372)
T cd04949 254 IEELGLEDYVFLKGYTRDLDEVYQKAQLSLLTSQ--SEGFGLSLMEALSHGLPVISYDVN 311 (372)
T ss_pred HHHcCCcceEEEcCCCCCHHHHHhhhhEEEeccc--ccccChHHHHHHhCCCCEEEecCC
Confidence 7889999999999999999999999999999999 999999999999999999999987
No 66
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=99.76 E-value=6.9e-17 Score=171.70 Aligned_cols=167 Identities=22% Similarity=0.279 Sum_probs=126.7
Q ss_pred HHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHH
Q 006050 355 AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVR 434 (663)
Q Consensus 355 ~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR 434 (663)
.+.++.+++.++++|+...++..+.. +.. ..++.++|+|++.+... +.
T Consensus 177 ~~~~~~~~d~ii~~S~~~~~~l~~~~---~~~-~~ki~vi~~gv~~~~~~--------------~~-------------- 224 (407)
T cd04946 177 RRYLLSSLDAVFPCSEQGRNYLQKRY---PAY-KEKIKVSYLGVSDPGII--------------SK-------------- 224 (407)
T ss_pred HHHHHhcCCEEEECCHHHHHHHHHHC---CCc-cccEEEEECCccccccc--------------CC--------------
Confidence 34457889999999998877754322 222 24678999998653210 00
Q ss_pred HHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccccccc
Q 006050 435 KEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLS 514 (663)
Q Consensus 435 ~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~ 514 (663)
...++.+.|+++|++.+.||++.|++|+..+.++.|+. ++
T Consensus 225 ---~~~~~~~~il~~Grl~~~Kg~~~li~a~~~l~~~~p~~---~l---------------------------------- 264 (407)
T cd04946 225 ---PSKDDTLRIVSCSYLVPVKRVDLIIKALAALAKARPSI---KI---------------------------------- 264 (407)
T ss_pred ---CCCCCCEEEEEeeccccccCHHHHHHHHHHHHHhCCCc---eE----------------------------------
Confidence 01245678999999999999999999999998876652 00
Q ss_pred ccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHH
Q 006050 515 SNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEI 594 (663)
Q Consensus 515 ~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~ 594 (663)
..+++|. |+ ..+.
T Consensus 265 -----------------------------------------------------------~~~iiG~-g~-------~~~~ 277 (407)
T cd04946 265 -----------------------------------------------------------KWTHIGG-GP-------LEDT 277 (407)
T ss_pred -----------------------------------------------------------EEEEEeC-ch-------HHHH
Confidence 0255665 32 1334
Q ss_pred HHHHHHhCCCCCcEEEcCCcc--hHHHHHHH--ccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 595 LEFLSQHSNLSKAMLWTPATT--RVASLYSA--ADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~--dv~~lysa--ADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
++.+++..++.++|.|+|+.+ ++..+|+. ||+|++||. .|+||++++||||||+|||+|+++++.+
T Consensus 278 l~~~~~~~~~~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~--~Eg~p~~llEAma~G~PVIas~vgg~~e 347 (407)
T cd04946 278 LKELAESKPENISVNFTGELSNSEVYKLYKENPVDVFVNLSE--SEGLPVSIMEAMSFGIPVIATNVGGTPE 347 (407)
T ss_pred HHHHHHhcCCCceEEEecCCChHHHHHHHhhcCCCEEEeCCc--cccccHHHHHHHHcCCCEEeCCCCCcHH
Confidence 777887888889999999987 78899976 789999999 9999999999999999999999999865
No 67
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.74 E-value=2.8e-16 Score=144.91 Aligned_cols=64 Identities=31% Similarity=0.355 Sum_probs=55.4
Q ss_pred HHHHhCCCCCcEEEcCCc---chHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 597 FLSQHSNLSKAMLWTPAT---TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 597 ~l~~~~gLs~~V~~~G~~---~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
.++...+..++|.++|.. +.+..++++||++++||. .|+||.+++|||+||+|||+|+.++..+
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~di~l~~~~--~e~~~~~~~Eam~~g~pvi~s~~~~~~e 218 (229)
T cd01635 152 ELLAALLLLDRVIFLGGLDPEELLALLLAAADVFVLPSL--REGFGLVVLEAMACGLPVIATDVGGPPE 218 (229)
T ss_pred HHHHhcCCcccEEEeCCCCcHHHHHHHhhcCCEEEeccc--ccCcChHHHHHHhCCCCEEEcCCCCcce
Confidence 335667888999999994 466777777999999999 9999999999999999999999998764
No 68
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.72 E-value=7.9e-16 Score=156.31 Aligned_cols=255 Identities=15% Similarity=0.148 Sum_probs=155.8
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEE--eCCC---Cch-----------------
Q 006050 248 IFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--EDRG---EPS----------------- 305 (663)
Q Consensus 248 I~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl--~~~~---~~s----------------- 305 (663)
+++....||+...+.+||++|.+.||+|++++... +.....+...++++. +... ...
T Consensus 3 ~~~~~~~gG~~~~~~~la~~l~~~G~ev~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (350)
T cd03785 3 LIAGGGTGGHIFPALALAEELRERGAEVLFLGTKR-GLEARLVPKAGIPLHTIPVGGLRRKGSLKKLKAPFKLLKGVLQA 81 (350)
T ss_pred EEEecCchhhhhHHHHHHHHHHhCCCEEEEEECCC-cchhhcccccCCceEEEEecCcCCCChHHHHHHHHHHHHHHHHH
Confidence 45566678999999999999999999999887542 222222323455543 2211 100
Q ss_pred --hhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHHHHHHhcCCEEEEecHHHHHHHHHHhHhh
Q 006050 306 --FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEE 383 (663)
Q Consensus 306 --fk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~k~vl~rvk~lIflSes~~k~w~~~~~~~ 383 (663)
+....++|+||+++...+ +.....+. ..+. +++.+.+....... .+.+...++.++++|+...++
T Consensus 82 ~~~i~~~~pDvI~~~~~~~~-~~~~~~a~-~~~~-p~v~~~~~~~~~~~--~~~~~~~~~~vi~~s~~~~~~-------- 148 (350)
T cd03785 82 RKILKKFKPDVVVGFGGYVS-GPVGLAAK-LLGI-PLVIHEQNAVPGLA--NRLLARFADRVALSFPETAKY-------- 148 (350)
T ss_pred HHHHHhcCCCEEEECCCCcc-hHHHHHHH-HhCC-CEEEEcCCCCccHH--HHHHHHhhCEEEEcchhhhhc--------
Confidence 012357999998763221 11111111 1122 23333221111111 122344578888888765432
Q ss_pred cccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHH-HHH
Q 006050 384 KLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQL-LLV 462 (663)
Q Consensus 384 ~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqd-lLL 462 (663)
+. ..+..+++++++.+.+.. ... ++++++++++.+|+++|+....|+.. +++
T Consensus 149 -~~-~~~~~~i~n~v~~~~~~~------------------------~~~-~~~~~~~~~~~~i~~~~g~~~~~~~~~~l~ 201 (350)
T cd03785 149 -FP-KDKAVVTGNPVREEILAL------------------------DRE-RARLGLRPGKPTLLVFGGSQGARAINEAVP 201 (350)
T ss_pred -CC-CCcEEEECCCCchHHhhh------------------------hhh-HHhcCCCCCCeEEEEECCcHhHHHHHHHHH
Confidence 11 246788999987653210 011 67789988898998988877777765 556
Q ss_pred HHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcc
Q 006050 463 ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLF 542 (663)
Q Consensus 463 eA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f 542 (663)
+|++.+.+ ++.
T Consensus 202 ~a~~~l~~--~~~------------------------------------------------------------------- 212 (350)
T cd03785 202 EALAELLR--KRL------------------------------------------------------------------- 212 (350)
T ss_pred HHHHHhhc--cCe-------------------------------------------------------------------
Confidence 88777631 110
Q ss_pred cccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHH
Q 006050 543 TSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYS 622 (663)
Q Consensus 543 ~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lys 622 (663)
+ +.+++|. +. .+ .++++++++ .++|+|+|++.++..+|+
T Consensus 213 ------------------~------------~~~i~G~-g~-------~~-~l~~~~~~~--~~~v~~~g~~~~~~~~l~ 251 (350)
T cd03785 213 ------------------Q------------VIHQTGK-GD-------LE-EVKKAYEEL--GVNYEVFPFIDDMAAAYA 251 (350)
T ss_pred ------------------E------------EEEEcCC-cc-------HH-HHHHHHhcc--CCCeEEeehhhhHHHHHH
Confidence 0 0133444 21 22 355566554 578999999999999999
Q ss_pred HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 623 AADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 623 aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
+||++|.+|- +++++|||++|+|||+++.++
T Consensus 252 ~ad~~v~~sg------~~t~~Eam~~G~Pvv~~~~~~ 282 (350)
T cd03785 252 AADLVISRAG------ASTVAELAALGLPAILIPLPY 282 (350)
T ss_pred hcCEEEECCC------HhHHHHHHHhCCCEEEeecCC
Confidence 9999998772 588999999999999987643
No 69
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.71 E-value=1.2e-15 Score=157.09 Aligned_cols=255 Identities=17% Similarity=0.145 Sum_probs=157.9
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCC--C---Cc---------hh--
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDR--G---EP---------SF-- 306 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~--~---~~---------sf-- 306 (663)
+||+++... .||++..+++||++|.+.||+|++++... +.....+...|+++.... . .. .+
T Consensus 2 ~~i~i~~~g--~gG~~~~~~~la~~L~~~g~ev~vv~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (357)
T PRK00726 2 KKILLAGGG--TGGHVFPALALAEELKKRGWEVLYLGTAR-GMEARLVPKAGIEFHFIPSGGLRRKGSLANLKAPFKLLK 78 (357)
T ss_pred cEEEEEcCc--chHhhhHHHHHHHHHHhCCCEEEEEECCC-chhhhccccCCCcEEEEeccCcCCCChHHHHHHHHHHHH
Confidence 678877654 47999999999999999999999887432 211222233576654321 1 00 01
Q ss_pred --------hhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHHHHHHhcCCEEEEecHHHHHHHHH
Q 006050 307 --------KTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFLSESQTKQWLT 378 (663)
Q Consensus 307 --------k~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~k~vl~rvk~lIflSes~~k~w~~ 378 (663)
....++|+||+++...+ |........ . ..+++++.+....... .+.+...++.+++.++.. .+
T Consensus 79 ~~~~~~~~ik~~~pDvv~~~~~~~~-~~~~~~~~~-~-~~p~v~~~~~~~~~~~--~r~~~~~~d~ii~~~~~~--~~-- 149 (357)
T PRK00726 79 GVLQARKILKRFKPDVVVGFGGYVS-GPGGLAARL-L-GIPLVIHEQNAVPGLA--NKLLARFAKKVATAFPGA--FP-- 149 (357)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcch-hHHHHHHHH-c-CCCEEEEcCCCCccHH--HHHHHHHhchheECchhh--hh--
Confidence 12357999999973322 222222222 1 2345543321111111 122345678787776632 11
Q ss_pred HhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCH
Q 006050 379 WCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQ 458 (663)
Q Consensus 379 ~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGq 458 (663)
. + ...+..++|++++++.+.. . ..+++++++++..+|+++|+..+.|++
T Consensus 150 ----~-~-~~~~i~vi~n~v~~~~~~~--------------~-----------~~~~~~~~~~~~~~i~~~gg~~~~~~~ 198 (357)
T PRK00726 150 ----E-F-FKPKAVVTGNPVREEILAL--------------A-----------APPARLAGREGKPTLLVVGGSQGARVL 198 (357)
T ss_pred ----c-c-CCCCEEEECCCCChHhhcc--------------c-----------chhhhccCCCCCeEEEEECCcHhHHHH
Confidence 1 2 2357899999998753210 0 012356777788889999998888887
Q ss_pred HHHH-HHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccC
Q 006050 459 LLLV-ESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLL 537 (663)
Q Consensus 459 dlLL-eA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~ 537 (663)
..++ +|++++... +.
T Consensus 199 ~~~l~~a~~~~~~~-~~--------------------------------------------------------------- 214 (357)
T PRK00726 199 NEAVPEALALLPEA-LQ--------------------------------------------------------------- 214 (357)
T ss_pred HHHHHHHHHHhhhC-cE---------------------------------------------------------------
Confidence 5555 888776321 10
Q ss_pred CCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchH
Q 006050 538 SPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRV 617 (663)
Q Consensus 538 ~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv 617 (663)
..+++|. |. .++.++. .+ +++. |.|+|+++++
T Consensus 215 ------------------------------------~~~~~G~-g~-------~~~~~~~-~~-~~~~--v~~~g~~~~~ 246 (357)
T PRK00726 215 ------------------------------------VIHQTGK-GD-------LEEVRAA-YA-AGIN--AEVVPFIDDM 246 (357)
T ss_pred ------------------------------------EEEEcCC-Cc-------HHHHHHH-hh-cCCc--EEEeehHhhH
Confidence 1244554 22 2343333 35 7774 9999999999
Q ss_pred HHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 618 ASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 618 ~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
+++|++||+++++|- +.+++||||||+|||++..+
T Consensus 247 ~~~~~~~d~~i~~~g------~~~~~Ea~~~g~Pvv~~~~~ 281 (357)
T PRK00726 247 AAAYAAADLVICRAG------ASTVAELAAAGLPAILVPLP 281 (357)
T ss_pred HHHHHhCCEEEECCC------HHHHHHHHHhCCCEEEecCC
Confidence 999999999998772 68999999999999998764
No 70
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.68 E-value=9.8e-15 Score=154.76 Aligned_cols=273 Identities=17% Similarity=0.204 Sum_probs=160.0
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEE--EEEcCCCC-ChhHHhcCCeEEEeCCCCch-----hhhhcCccEEEE
Q 006050 246 ILIFHELSMTGAPLSMMELATELLSCGATVSA--VVLSKRGG-LMPELARRKIKVLEDRGEPS-----FKTSMKADLVIA 317 (663)
Q Consensus 246 LLI~heLs~gGAp~smmeLA~~L~s~G~~V~v--VvLs~~Gg-L~~eL~~~gIkVl~~~~~~s-----fk~~~k~DLVia 317 (663)
++=+|..|.| --.++..|+++|.+++.++.+ .+.+..|. +..+....++.+...+.+.. +-...++|+||.
T Consensus 52 ~iW~Ha~s~G-e~~~~~~l~~~l~~~~~~~~i~~t~~t~~~~~~~~~~~~~~~~~~~~P~d~~~~~~~~l~~~~Pd~v~~ 130 (425)
T PRK05749 52 LIWFHAVSVG-ETRAAIPLIRALRKRYPDLPILVTTMTPTGSERAQALFGDDVEHRYLPYDLPGAVRRFLRFWRPKLVII 130 (425)
T ss_pred eEEEEeCCHH-HHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHhcCCCceEEEecCCcHHHHHHHHHhhCCCEEEE
Confidence 3569999877 446788999999998755433 33233331 22222233455543333322 234578999987
Q ss_pred CchhhHHHHHHHHHhCCCCCccEEEEEeehh---hh---hHHHHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCc
Q 006050 318 GSAVCATWIDQYITRFPAGGSQVVWWIMENR---RE---YFDRAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQP 391 (663)
Q Consensus 318 nSav~aswi~~yi~~~pa~~~~vvwwi~E~r---~~---yf~r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~ 391 (663)
+..- .|...+......+.+.+++..+-.. .. +....+.++.+++.++++|+...+.+. +.|+. ++ +
T Consensus 131 ~~~~--~~~~~l~~~~~~~ip~vl~~~~~~~~s~~~~~~~~~~~r~~~~~~d~ii~~S~~~~~~l~----~~g~~-~~-i 202 (425)
T PRK05749 131 METE--LWPNLIAELKRRGIPLVLANARLSERSFKRYQKFKRFYRLLFKNIDLVLAQSEEDAERFL----ALGAK-NE-V 202 (425)
T ss_pred Eecc--hhHHHHHHHHHCCCCEEEEeccCChhhHHHHHHHHHHHHHHHHhCCEEEECCHHHHHHHH----HcCCC-CC-c
Confidence 6321 2322211111122333333211100 01 111234567789999999998877643 34543 22 5
Q ss_pred EEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHh
Q 006050 392 AVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ 471 (663)
Q Consensus 392 ~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~ 471 (663)
.++++..-+. ....... . .+..+|++++ +++.+++++|+ ..|+.++|++|++.+.++
T Consensus 203 ~vi~n~~~d~-------------~~~~~~~--~----~~~~~r~~~~--~~~~vil~~~~--~~~~~~~ll~A~~~l~~~ 259 (425)
T PRK05749 203 TVTGNLKFDI-------------EVPPELA--A----RAATLRRQLA--PNRPVWIAAST--HEGEEELVLDAHRALLKQ 259 (425)
T ss_pred EecccccccC-------------CCChhhH--H----HHHHHHHHhc--CCCcEEEEeCC--CchHHHHHHHHHHHHHHh
Confidence 5666531110 0001110 1 1234677787 45667777775 368899999999998766
Q ss_pred CCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCcccc
Q 006050 472 EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAV 551 (663)
Q Consensus 472 ~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~ 551 (663)
.|+.
T Consensus 260 ~~~~---------------------------------------------------------------------------- 263 (425)
T PRK05749 260 FPNL---------------------------------------------------------------------------- 263 (425)
T ss_pred CCCc----------------------------------------------------------------------------
Confidence 5552
Q ss_pred ccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCC-------------cEEEcCCcchHH
Q 006050 552 SFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSK-------------AMLWTPATTRVA 618 (663)
Q Consensus 552 ~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~-------------~V~~~G~~~dv~ 618 (663)
.++++|. |+ + ..+.+++++++.|++. .|.+.+...++.
T Consensus 264 ----------------------~liivG~-g~-----~-r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~ 314 (425)
T PRK05749 264 ----------------------LLILVPR-HP-----E-RFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELG 314 (425)
T ss_pred ----------------------EEEEcCC-Ch-----h-hHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHH
Confidence 0256665 32 1 1134777888888852 445555556899
Q ss_pred HHHHHccEEEE-cCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 619 SLYSAADVYVI-NSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 619 ~lysaADV~V~-pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
.+|++||++++ +|. .|++|.+++||||||+|||+++.
T Consensus 315 ~~y~~aDi~~v~~S~--~e~~g~~~lEAma~G~PVI~g~~ 352 (425)
T PRK05749 315 LLYAIADIAFVGGSL--VKRGGHNPLEPAAFGVPVISGPH 352 (425)
T ss_pred HHHHhCCEEEECCCc--CCCCCCCHHHHHHhCCCEEECCC
Confidence 99999999655 676 79999999999999999999753
No 71
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.68 E-value=4.5e-15 Score=150.70 Aligned_cols=253 Identities=17% Similarity=0.183 Sum_probs=153.3
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHH-hcCCeEEEeCCCC--------------ch--
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL-ARRKIKVLEDRGE--------------PS-- 305 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL-~~~gIkVl~~~~~--------------~s-- 305 (663)
|||+++.-+. +|......+||++|.+.||+|++++ . +++...++ ...|+++...... .+
T Consensus 1 ~~i~~~~g~~--~g~~~~~~~La~~L~~~g~eV~vv~-~-~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~l~~~~~~~ 76 (348)
T TIGR01133 1 KKVVLAAGGT--GGHIFPALAVAEELIKRGVEVLWLG-T-KRGLEKRLVPKAGIEFYFIPVGGLRRKGSFRLIKTPLKLL 76 (348)
T ss_pred CeEEEEeCcc--HHHHhHHHHHHHHHHhCCCEEEEEe-C-CCcchhcccccCCCceEEEeccCcCCCChHHHHHHHHHHH
Confidence 3788776554 3555555799999999999999885 2 33333333 3357666432110 00
Q ss_pred --------hhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHH-HHHHhcCCEEEEecHHHHHHH
Q 006050 306 --------FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRA-KLVLDRVKLLVFLSESQTKQW 376 (663)
Q Consensus 306 --------fk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~-k~vl~rvk~lIflSes~~k~w 376 (663)
+....++|+||+++...+ +........ .+. +++.+ +. ..+.... +.+...++.++++|+...++.
T Consensus 77 ~~~~~l~~~i~~~~pDvVi~~~~~~~-~~~~~~~~~-~~~-p~v~~--~~-~~~~~~~~~~~~~~~d~ii~~~~~~~~~~ 150 (348)
T TIGR01133 77 KAVFQARRILKKFKPDAVIGFGGYVS-GPAGLAAKL-LGI-PLFHH--EQ-NAVPGLTNKLLSRFAKKVLISFPGAKDHF 150 (348)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccc-HHHHHHHHH-cCC-CEEEE--CC-CCCccHHHHHHHHHhCeeEECchhHhhcC
Confidence 012357999999864322 121112211 112 23322 21 1111111 334556888988887654331
Q ss_pred HHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCC
Q 006050 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGK 456 (663)
Q Consensus 377 ~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~K 456 (663)
...+++++++++..... ..+++++++++.++|+++|+....|
T Consensus 151 -------------~~~~i~n~v~~~~~~~~-------------------------~~~~~~~~~~~~~~i~~~gg~~~~~ 192 (348)
T TIGR01133 151 -------------EAVLVGNPVRQEIRSLP-------------------------VPRERFGLREGKPTILVLGGSQGAK 192 (348)
T ss_pred -------------CceEEcCCcCHHHhccc-------------------------chhhhcCCCCCCeEEEEECCchhHH
Confidence 23688999876432100 0123578888889999999888888
Q ss_pred CHHH-HHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccccc
Q 006050 457 GQLL-LVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKN 535 (663)
Q Consensus 457 Gqdl-LLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~ 535 (663)
++.. +++|++.+... .. +
T Consensus 193 ~~~~~l~~a~~~l~~~--~~------------------------~----------------------------------- 211 (348)
T TIGR01133 193 ILNELVPKALAKLAEK--GI------------------------Q----------------------------------- 211 (348)
T ss_pred HHHHHHHHHHHHHhhc--Cc------------------------E-----------------------------------
Confidence 8654 55788776331 10 0
Q ss_pred cCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc
Q 006050 536 LLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT 615 (663)
Q Consensus 536 ~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~ 615 (663)
.++++..+. ++.|+..++++++.+.|.|+ ..
T Consensus 212 ---------------------------------------~~~~~g~~~--------~~~l~~~~~~~~l~~~v~~~-~~- 242 (348)
T TIGR01133 212 ---------------------------------------IVHQTGKND--------LEKVKNVYQELGIEAIVTFI-DE- 242 (348)
T ss_pred ---------------------------------------EEEECCcch--------HHHHHHHHhhCCceEEecCc-cc-
Confidence 123332121 23477777888887777777 33
Q ss_pred hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 616 dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
++.++|++||++|.+| + |++++||||+|+|||++++++
T Consensus 243 ~~~~~l~~ad~~v~~~---g---~~~l~Ea~~~g~Pvv~~~~~~ 280 (348)
T TIGR01133 243 NMAAAYAAADLVISRA---G---ASTVAELAAAGVPAILIPYPY 280 (348)
T ss_pred CHHHHHHhCCEEEECC---C---hhHHHHHHHcCCCEEEeeCCC
Confidence 9999999999999876 2 789999999999999998754
No 72
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=99.66 E-value=3.5e-15 Score=162.61 Aligned_cols=235 Identities=16% Similarity=0.190 Sum_probs=144.6
Q ss_pred CccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehh--hhhHH---HHHHH---HhcCCEEEEecHHHHHHHHHHhHh
Q 006050 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENR--REYFD---RAKLV---LDRVKLLVFLSESQTKQWLTWCEE 382 (663)
Q Consensus 311 k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r--~~yf~---r~k~v---l~rvk~lIflSes~~k~w~~~~~~ 382 (663)
..|+|++|..-.. .+.+++... ....++.|+.|--- .+.|. ..+.+ +-.++.+.|-+..-.+...+.|..
T Consensus 131 ~~d~iwihDyhl~-llp~~lr~~-~~~~~i~~f~HipfP~~e~~~~lp~~~~ll~~~l~~D~igF~t~~~~~~Fl~~~~~ 208 (460)
T cd03788 131 PGDLVWVHDYHLL-LLPQMLRER-GPDARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARNFLSCCSR 208 (460)
T ss_pred CCCEEEEeChhhh-HHHHHHHhh-CCCCeEEEEEeCCCCChHHHhhCCChHHHHHHHhcCCEEEECCHHHHHHHHHHHHH
Confidence 4689988864211 123444321 11346777777311 12221 01112 334788888887666666666653
Q ss_pred h-ccc--------C---CCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEe
Q 006050 383 E-KLK--------L---RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLS 450 (663)
Q Consensus 383 ~-~i~--------l---~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VG 450 (663)
. +.. . ..++.++|+||+.+.+..... ++ ..++.+++..+...++.+|+++|
T Consensus 209 ~l~~~~~~~~~i~~~g~~~~i~vip~GID~~~f~~~~~---------~~--------~~~~~~~~~~~~~~~~~~il~vg 271 (460)
T cd03788 209 LLGLEVTDDGGVEYGGRRVRVGAFPIGIDPDAFRKLAA---------SP--------EVQERAAELRERLGGRKLIVGVD 271 (460)
T ss_pred HcCCcccCCceEEECCEEEEEEEEeCeEcHHHHHHHhc---------Cc--------hhHHHHHHHHHhcCCCEEEEEec
Confidence 2 111 0 123678999998765432110 01 11223444456667889999999
Q ss_pred cCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCc
Q 006050 451 SINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNE 530 (663)
Q Consensus 451 ri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (663)
|+.+.||++.+|+|+..++++.|+. +
T Consensus 272 Rl~~~Kgi~~ll~A~~~ll~~~p~~-----~------------------------------------------------- 297 (460)
T cd03788 272 RLDYSKGIPERLLAFERLLERYPEW-----R------------------------------------------------- 297 (460)
T ss_pred CccccCCHHHHHHHHHHHHHhChhh-----c-------------------------------------------------
Confidence 9999999999999999998887763 0
Q ss_pred ccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChh--HHHHHHHHHHHhCCCC---
Q 006050 531 PVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVP--YVKEILEFLSQHSNLS--- 605 (663)
Q Consensus 531 p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~--y~k~~L~~l~~~~gLs--- 605 (663)
.++ .++++|... ..+..+ ..++.++.++.+.|..
T Consensus 298 ---------------------------~~v-------------~Lv~vg~~~-~g~~~~~~~l~~~l~~~v~~in~~~g~ 336 (460)
T cd03788 298 ---------------------------GKV-------------VLVQIAVPS-RTDVPEYQELRREVEELVGRINGKFGT 336 (460)
T ss_pred ---------------------------CCE-------------EEEEEccCC-CcCcHHHHHHHHHHHHHHHHHHhccCC
Confidence 000 124555321 111111 1344466666554321
Q ss_pred ---CcE-EEcCC--cchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCC----EEEeCCCCcc
Q 006050 606 ---KAM-LWTPA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----MLEAQKKLLS 661 (663)
Q Consensus 606 ---~~V-~~~G~--~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlP----VVatd~~~l~ 661 (663)
..| .+.|. .+++..+|++||+||+||. .|+||+|++||||||+| ||+|+.+|.+
T Consensus 337 ~~~~~v~~~~g~v~~~el~~~y~~aDv~v~pS~--~Eg~~lv~lEAma~g~p~~g~vV~S~~~G~~ 400 (460)
T cd03788 337 LDWTPVRYLYRSLPREELAALYRAADVALVTPL--RDGMNLVAKEYVACQDDDPGVLILSEFAGAA 400 (460)
T ss_pred CCceeEEEEeCCCCHHHHHHHHHhccEEEeCcc--ccccCcccceeEEEecCCCceEEEeccccch
Confidence 234 45565 4599999999999999999 99999999999999999 9999877754
No 73
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=99.65 E-value=1e-15 Score=140.89 Aligned_cols=124 Identities=27% Similarity=0.529 Sum_probs=101.9
Q ss_pred HHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHh-CCCCChhhhhhcccccccccccccccccccccccccc
Q 006050 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ-EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (663)
Q Consensus 430 r~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~-~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~ 508 (663)
|+..|...+..+++.+|+++|++.+.||++.+++|+..+.++ .+..
T Consensus 2 ~~~~~~~~~~~~~~~~il~~g~~~~~K~~~~li~a~~~l~~~~~~~~--------------------------------- 48 (172)
T PF00534_consen 2 KDKLREKLKIPDKKKIILFIGRLDPEKGIDLLIEAFKKLKEKKNPNY--------------------------------- 48 (172)
T ss_dssp HHHHHHHTTT-TTSEEEEEESESSGGGTHHHHHHHHHHHHHHHHTTE---------------------------------
T ss_pred hHHHHHHcCCCCCCeEEEEEecCccccCHHHHHHHHHHHHhhcCCCe---------------------------------
Confidence 456788899999999999999999999999999999999764 3331
Q ss_pred ccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCCh
Q 006050 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV 588 (663)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~ 588 (663)
..+++|. +.
T Consensus 49 -----------------------------------------------------------------~l~i~G~-~~----- 57 (172)
T PF00534_consen 49 -----------------------------------------------------------------KLVIVGD-GE----- 57 (172)
T ss_dssp -----------------------------------------------------------------EEEEESH-CC-----
T ss_pred -----------------------------------------------------------------EEEEEcc-cc-----
Confidence 0256663 22
Q ss_pred hHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 589 PYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 589 ~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
+ ...+..+++.+++.++|+|+|..+ ++..+|+.||++|+||. .|+||.+++|||+||+|||+++.++..
T Consensus 58 -~-~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~di~v~~s~--~e~~~~~~~Ea~~~g~pvI~~~~~~~~ 128 (172)
T PF00534_consen 58 -Y-KKELKNLIEKLNLKENIIFLGYVPDDELDELYKSSDIFVSPSR--NEGFGLSLLEAMACGCPVIASDIGGNN 128 (172)
T ss_dssp -H-HHHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHHTSEEEE-BS--SBSS-HHHHHHHHTT-EEEEESSTHHH
T ss_pred -c-ccccccccccccccccccccccccccccccccccceecccccc--ccccccccccccccccceeeccccCCc
Confidence 3 344888999999999999999998 99999999999999999 899999999999999999999987653
No 74
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=99.60 E-value=5.1e-14 Score=154.18 Aligned_cols=188 Identities=15% Similarity=0.200 Sum_probs=123.1
Q ss_pred hcCCEEEEecHHHHHHHHHHhHh-hcccC----------CCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHH
Q 006050 360 DRVKLLVFLSESQTKQWLTWCEE-EKLKL----------RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNL 428 (663)
Q Consensus 360 ~rvk~lIflSes~~k~w~~~~~~-~~i~l----------~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~ 428 (663)
-.++.+.|-+..-.+++...|.. .+... ..++.++|+|||.+.+....- .++. +.
T Consensus 182 l~~dligF~t~~~~~~Fl~~~~~~l~~~~~~~~~~~~g~~~~v~viP~GID~~~f~~~~~---------~~~~-----~~ 247 (456)
T TIGR02400 182 LAYDLVGFQTYDDARNFLSAVSRELGLETLPNGVESGGRTVRVGAFPIGIDVDRFAEQAK---------KPSV-----QK 247 (456)
T ss_pred hcCCEEEECCHHHHHHHHHHHHHHhCCcccCCceEECCcEEEEEEecCcCCHHHHHHHhc---------ChhH-----HH
Confidence 35788889988888888877764 22211 113568899988765432110 0111 01
Q ss_pred HHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccc
Q 006050 429 LRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (663)
Q Consensus 429 lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~ 508 (663)
....+|++++ +..+|++|||+++.||++.+++|++.++++.|+. +
T Consensus 248 ~~~~lr~~~~---~~~vIl~VgRLd~~KGi~~ll~A~~~ll~~~p~~-----~--------------------------- 292 (456)
T TIGR02400 248 RIAELRESLK---GRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEW-----R--------------------------- 292 (456)
T ss_pred HHHHHHHHcC---CCeEEEEccccccccCHHHHHHHHHHHHHhCccc-----c---------------------------
Confidence 1234677763 6789999999999999999999999999888863 0
Q ss_pred ccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCCh
Q 006050 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV 588 (663)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~ 588 (663)
.++ .++++|. ++..+..
T Consensus 293 -------------------------------------------------~~v-------------~Lv~v~~-p~rg~~~ 309 (456)
T TIGR02400 293 -------------------------------------------------GKV-------------VLVQIAV-PSRGDVP 309 (456)
T ss_pred -------------------------------------------------Cce-------------EEEEEec-CCccCch
Confidence 000 1244542 1111122
Q ss_pred hH--HHHHHHHHHHhCC----CCC--cEEEc-CC--cchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCC----EE
Q 006050 589 PY--VKEILEFLSQHSN----LSK--AMLWT-PA--TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP----ML 653 (663)
Q Consensus 589 ~y--~k~~L~~l~~~~g----Ls~--~V~~~-G~--~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlP----VV 653 (663)
+| +++.++.++.+.| ..+ .|+++ +. ..++..+|++|||+|+||. .||||+|++||||||+| ||
T Consensus 310 ~~~~l~~~i~~lv~~in~~~~~~~~~pv~~l~~~~~~~el~aly~aaDv~vv~S~--~EG~~Lv~lEamA~g~P~~g~vV 387 (456)
T TIGR02400 310 EYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPL--RDGMNLVAKEYVAAQDPKDGVLI 387 (456)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCccEEEEcCCCCHHHHHHHHHhCcEEEECcc--ccccCccHHHHHHhcCCCCceEE
Confidence 22 3344555543322 111 14443 43 3589999999999999999 99999999999999999 99
Q ss_pred EeCCCCcc
Q 006050 654 EAQKKLLS 661 (663)
Q Consensus 654 atd~~~l~ 661 (663)
+|+.+|.+
T Consensus 388 lS~~~G~~ 395 (456)
T TIGR02400 388 LSEFAGAA 395 (456)
T ss_pred EeCCCCCh
Confidence 99887754
No 75
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.58 E-value=3e-13 Score=140.98 Aligned_cols=263 Identities=14% Similarity=0.112 Sum_probs=152.7
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCCh---hHHhcC------------------CeEEEeC
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM---PELARR------------------KIKVLED 300 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~---~eL~~~------------------gIkVl~~ 300 (663)
.+|||+++.+. .+|.......|+.+|.+.|++|++++-.. .... ..+.+. .......
T Consensus 4 ~~rili~t~~~-G~GH~~~a~al~~~l~~~g~~~~~~~d~~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~ 81 (380)
T PRK13609 4 NPKVLILTAHY-GNGHVQVAKTLEQTFRQKGIKDVIVCDLF-GESHPVITEITKYLYLKSYTIGKELYRLFYYGVEKIYD 81 (380)
T ss_pred CCeEEEEEcCC-CchHHHHHHHHHHHHHhcCCCcEEEEEhH-HhcchHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccc
Confidence 47888888765 33666678889999999999866554222 1111 111000 0000000
Q ss_pred CCCc---------h---hhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHHHHHHhcCCEEEEe
Q 006050 301 RGEP---------S---FKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLVFL 368 (663)
Q Consensus 301 ~~~~---------s---fk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~k~vl~rvk~lIfl 368 (663)
.... . +....++|+||++....+ +..+... .....+++.+++....+ ...+..+++.+++.
T Consensus 82 ~~~~~~~~~~~~~~l~~~l~~~~pD~Vi~~~~~~~--~~~~~~~-~~~~ip~~~~~td~~~~----~~~~~~~ad~i~~~ 154 (380)
T PRK13609 82 KKIFSWYANFGRKRLKLLLQAEKPDIVINTFPIIA--VPELKKQ-TGISIPTYNVLTDFCLH----KIWVHREVDRYFVA 154 (380)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhCcCEEEEcChHHH--HHHHHHh-cCCCCCeEEEeCCCCCC----cccccCCCCEEEEC
Confidence 0000 0 112358999998765432 2222222 12223344333221111 12235678999999
Q ss_pred cHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCE-EEE
Q 006050 369 SESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDM-LVL 447 (663)
Q Consensus 369 Ses~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~-lVl 447 (663)
|+...+.+ .+.+++. +++.++++.+.+.+. . + . .+..+|+++|++++.. +++
T Consensus 155 s~~~~~~l----~~~gi~~-~ki~v~G~p~~~~f~--~--------~---~---------~~~~~~~~~~l~~~~~~il~ 207 (380)
T PRK13609 155 TDHVKKVL----VDIGVPP-EQVVETGIPIRSSFE--L--------K---I---------NPDIIYNKYQLCPNKKILLI 207 (380)
T ss_pred CHHHHHHH----HHcCCCh-hHEEEECcccChHHc--C--------c---C---------CHHHHHHHcCCCCCCcEEEE
Confidence 98876653 3345532 245555443332210 0 0 0 0124678899987765 455
Q ss_pred EEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccc
Q 006050 448 SLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQ 527 (663)
Q Consensus 448 ~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~ 527 (663)
+.|++...|++..+++++... |+. +
T Consensus 208 ~~G~~~~~k~~~~li~~l~~~----~~~-----~---------------------------------------------- 232 (380)
T PRK13609 208 MAGAHGVLGNVKELCQSLMSV----PDL-----Q---------------------------------------------- 232 (380)
T ss_pred EcCCCCCCcCHHHHHHHHhhC----CCc-----E----------------------------------------------
Confidence 668888889999888876421 321 0
Q ss_pred cCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCc
Q 006050 528 LNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKA 607 (663)
Q Consensus 528 ~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~ 607 (663)
.+++|..+ .+ .++.++.++++.+ ++
T Consensus 233 -----------------------------------------------~viv~G~~-----~~-~~~~l~~~~~~~~--~~ 257 (380)
T PRK13609 233 -----------------------------------------------VVVVCGKN-----EA-LKQSLEDLQETNP--DA 257 (380)
T ss_pred -----------------------------------------------EEEEeCCC-----HH-HHHHHHHHHhcCC--Cc
Confidence 13443211 12 3455777777654 78
Q ss_pred EEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 608 V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
|+|+|+++++.++|++||++|. . +.|++++||||||+|||+++
T Consensus 258 v~~~g~~~~~~~l~~~aD~~v~--~----~gg~t~~EA~a~g~PvI~~~ 300 (380)
T PRK13609 258 LKVFGYVENIDELFRVTSCMIT--K----PGGITLSEAAALGVPVILYK 300 (380)
T ss_pred EEEEechhhHHHHHHhccEEEe--C----CCchHHHHHHHhCCCEEECC
Confidence 9999999999999999999884 2 45899999999999999986
No 76
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=99.57 E-value=2.1e-13 Score=153.03 Aligned_cols=44 Identities=16% Similarity=0.238 Sum_probs=42.1
Q ss_pred hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 616 dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
+..++|++||++|+||. .|+||++++||||||+|||+|+.+++.
T Consensus 467 ~y~E~~~g~dl~v~PS~--yE~fG~~~lEAma~G~PvI~t~~~gf~ 510 (590)
T cd03793 467 DYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSITTNLSGFG 510 (590)
T ss_pred chHHHhhhceEEEeccc--cCCCCcHHHHHHHcCCCEEEccCcchh
Confidence 68999999999999999 999999999999999999999999884
No 77
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.53 E-value=3.2e-13 Score=142.29 Aligned_cols=160 Identities=17% Similarity=0.147 Sum_probs=111.2
Q ss_pred HHhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHh
Q 006050 358 VLDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEM 437 (663)
Q Consensus 358 vl~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~el 437 (663)
+...++.+++.|+...+. +.+.|++ ++++.+++++++.+.. . +. . .+..+|+++
T Consensus 147 ~~~~~d~~~~~s~~~~~~----l~~~g~~-~~ki~v~g~~v~~~f~--~--------~~--~---------~~~~~r~~~ 200 (382)
T PLN02605 147 FHKGVTRCFCPSEEVAKR----ALKRGLE-PSQIRVYGLPIRPSFA--R--------AV--R---------PKDELRREL 200 (382)
T ss_pred ccCCCCEEEECCHHHHHH----HHHcCCC-HHHEEEECcccCHhhc--c--------CC--C---------CHHHHHHHc
Confidence 346788898888877665 3445654 3467777777654321 0 00 0 124578999
Q ss_pred CCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHh----CCCCChhhhhhccccccccccccccccccccccccccccccc
Q 006050 438 GLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQ----EPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGL 513 (663)
Q Consensus 438 GL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~----~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~ 513 (663)
|++++.++|+++|+....|++..+++++..+... .++.
T Consensus 201 gl~~~~~~il~~Gg~~g~~~~~~li~~l~~~~~~~~~~~~~~-------------------------------------- 242 (382)
T PLN02605 201 GMDEDLPAVLLMGGGEGMGPLEETARALGDSLYDKNLGKPIG-------------------------------------- 242 (382)
T ss_pred CCCCCCcEEEEECCCcccccHHHHHHHHHHhhccccccCCCc--------------------------------------
Confidence 9999999999999999999999999998765311 1110
Q ss_pred cccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHH
Q 006050 514 SSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKE 593 (663)
Q Consensus 514 ~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~ 593 (663)
.+.+++|. + .. .++
T Consensus 243 -----------------------------------------------------------~~~vi~G~-~-----~~-~~~ 256 (382)
T PLN02605 243 -----------------------------------------------------------QVVVICGR-N-----KK-LQS 256 (382)
T ss_pred -----------------------------------------------------------eEEEEECC-C-----HH-HHH
Confidence 01244453 1 12 233
Q ss_pred HHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 594 ILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 594 ~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
.|+.+ ....+|+|+|++++++++|++||++|.++- |.+++||||||+|||+++.
T Consensus 257 ~L~~~----~~~~~v~~~G~~~~~~~l~~aaDv~V~~~g------~~ti~EAma~g~PvI~~~~ 310 (382)
T PLN02605 257 KLESR----DWKIPVKVRGFVTNMEEWMGACDCIITKAG------PGTIAEALIRGLPIILNGY 310 (382)
T ss_pred HHHhh----cccCCeEEEeccccHHHHHHhCCEEEECCC------cchHHHHHHcCCCEEEecC
Confidence 34433 223579999999999999999999998762 7899999999999999983
No 78
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=9e-12 Score=138.11 Aligned_cols=192 Identities=19% Similarity=0.157 Sum_probs=132.9
Q ss_pred HHhcCCEEEEecHHHHHHHHHHhHhh---cc-cC-CCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHH
Q 006050 358 VLDRVKLLVFLSESQTKQWLTWCEEE---KL-KL-RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDS 432 (663)
Q Consensus 358 vl~rvk~lIflSes~~k~w~~~~~~~---~i-~l-~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~ 432 (663)
.+..++.+.++|.+-++...+-.-.+ ++ .. ..+..-|-||++.++-.....+ . -.-.|+.+... +|...+..
T Consensus 205 gi~~ad~vttVSptYa~Ei~t~~~g~gl~g~l~~~~~~l~GI~NgiD~~~wnp~~d~-~-~~~~y~~~~~~-~k~~nk~~ 281 (487)
T COG0297 205 GLYYADAVTTVSPTYAGEIYTPEYGEGLEGLLSWRSGKLSGILNGIDYDLWNPETDP-Y-IAANYSAEVLP-AKAENKVA 281 (487)
T ss_pred hheeccEEEEECHHHHHhhccccccccchhhhhhccccEEEEEeeEEecccCccccc-c-hhccCCccchh-hhHHHHHH
Confidence 34567788888877655433110001 10 00 1235667778776543222111 1 11334444442 34566788
Q ss_pred HHHHhCCCC--CCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccccc
Q 006050 433 VRKEMGLTD--QDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDD 510 (663)
Q Consensus 433 vR~elGL~~--~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~ 510 (663)
+++++||+. +.+++.++|||..+||.|++++|+..++++.-.
T Consensus 282 L~~~~gL~~~~~~pl~~~vsRl~~QKG~dl~~~~i~~~l~~~~~------------------------------------ 325 (487)
T COG0297 282 LQERLGLDVDLPGPLFGFVSRLTAQKGLDLLLEAIDELLEQGWQ------------------------------------ 325 (487)
T ss_pred HHHHhCCCCCCCCcEEEEeeccccccchhHHHHHHHHHHHhCce------------------------------------
Confidence 999999983 569999999999999999999999999775411
Q ss_pred ccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhH
Q 006050 511 VGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPY 590 (663)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y 590 (663)
.+++|... +.
T Consensus 326 ----------------------------------------------------------------~vilG~gd------~~ 335 (487)
T COG0297 326 ----------------------------------------------------------------LVLLGTGD------PE 335 (487)
T ss_pred ----------------------------------------------------------------EEEEecCc------HH
Confidence 37788732 34
Q ss_pred HHHHHHHHHHhCCCCCcEEEcCCcc-hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 591 VKEILEFLSQHSNLSKAMLWTPATT-RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 591 ~k~~L~~l~~~~gLs~~V~~~G~~~-dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
+++.+..+++.+.. .-....|+.. -...+|+.||++++||+ +|+||++-++||++|++.|+..+|||.
T Consensus 336 le~~~~~la~~~~~-~~~~~i~~~~~la~~i~agaD~~lmPSr--fEPcGL~ql~amryGtvpIv~~tGGLa 404 (487)
T COG0297 336 LEEALRALASRHPG-RVLVVIGYDEPLAHLIYAGADVILMPSR--FEPCGLTQLYAMRYGTLPIVRETGGLA 404 (487)
T ss_pred HHHHHHHHHHhcCc-eEEEEeeecHHHHHHHHhcCCEEEeCCc--CcCCcHHHHHHHHcCCcceEcccCCcc
Confidence 57779999987644 2334455554 56789999999999999 999999999999999999999999986
No 79
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=99.47 E-value=4.3e-12 Score=133.23 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=48.3
Q ss_pred CCcEEEcCCcc--hHHHHHHHccEEEEcCCC---CCCCCcHHHHHHHHcCCCEEEeCCCCc
Q 006050 605 SKAMLWTPATT--RVASLYSAADVYVINSQG---LGETFGRVTIEAMAFGVPMLEAQKKLL 660 (663)
Q Consensus 605 s~~V~~~G~~~--dv~~lysaADV~V~pS~~---~~E~FG~ViiEAMA~GlPVVatd~~~l 660 (663)
.++|+|+|..+ +++.+|++|||+++|+.. ..+++|+.++||||||+|||+|+.+.+
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~~~~ 313 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPLPEV 313 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCcHHH
Confidence 36899999985 999999999999999861 245789999999999999999987543
No 80
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=99.41 E-value=6.1e-12 Score=146.37 Aligned_cols=186 Identities=15% Similarity=0.233 Sum_probs=120.9
Q ss_pred hcCCEEEEecHHHHHHHHHHhHh-hccc-------CC---CCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHH
Q 006050 360 DRVKLLVFLSESQTKQWLTWCEE-EKLK-------LR---SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNL 428 (663)
Q Consensus 360 ~rvk~lIflSes~~k~w~~~~~~-~~i~-------l~---s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~ 428 (663)
-.++.|-|.+..-.+++.+.|.. .+.. .. .++.++|+||+.+.+.... .+++. ++
T Consensus 202 l~aDligF~t~~y~r~Fl~~~~r~l~~~~~~~~i~~~gr~~~I~viP~GID~~~f~~~~---------~~~~~----~~- 267 (797)
T PLN03063 202 LTADLIGFHTYDFARHFLSACTRILGVEGTHEGVVDQGKVTRVAVFPIGIDPERFINTC---------ELPEV----KQ- 267 (797)
T ss_pred hcCCEEEeCCHHHHHHHHHHHHHHhCccccCCceEECCeEEEEEEEecccCHHHHHHHh---------cChhH----HH-
Confidence 35788888888888888777754 2211 11 2367899999876442110 01110 11
Q ss_pred HHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccc
Q 006050 429 LRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (663)
Q Consensus 429 lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~ 508 (663)
....+|+.++ +..+|++|||+++.||++.+|+||..++++.|+. +
T Consensus 268 ~~~~lr~~~~---~~~lIl~VgRLd~~KGi~~lL~Afe~lL~~~P~~-----~--------------------------- 312 (797)
T PLN03063 268 HMKELKRFFA---GRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEW-----R--------------------------- 312 (797)
T ss_pred HHHHHHHhcC---CCeEEEEecccccccCHHHHHHHHHHHHHhCccc-----c---------------------------
Confidence 1224555554 5789999999999999999999999999988874 0
Q ss_pred ccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCCh
Q 006050 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKV 588 (663)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~ 588 (663)
+++ +++.|+. ++..+..
T Consensus 313 -------------------------------------------------~kv-------------vLvqia~-psr~~~~ 329 (797)
T PLN03063 313 -------------------------------------------------DKV-------------MLVQIAV-PTRNDVP 329 (797)
T ss_pred -------------------------------------------------CcE-------------EEEEEec-CCCCchH
Confidence 000 1133332 2222223
Q ss_pred hHHHHHHHHHHHhCC--CCC---cEEEcC------Cc--chHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCC----
Q 006050 589 PYVKEILEFLSQHSN--LSK---AMLWTP------AT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP---- 651 (663)
Q Consensus 589 ~y~k~~L~~l~~~~g--Ls~---~V~~~G------~~--~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlP---- 651 (663)
+| ++ |+..++++. +.. .+.|+| .. .++..+|++|||||+||. .||||+|++||||||+|
T Consensus 330 ~y-~~-l~~~v~~l~g~In~~~g~~~~~pv~~l~~~v~~~el~aly~~ADvfvvtSl--rEGmnLv~lEamA~g~p~~gv 405 (797)
T PLN03063 330 EY-QK-LKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSL--RDGMNLVSYEFVACQKAKKGV 405 (797)
T ss_pred HH-HH-HHHHHHHHHHHhhcccccCCCceeEEecCCCCHHHHHHHHHhCCEEEeCcc--ccccCcchhhHheeecCCCCC
Confidence 33 33 444444332 222 234443 33 489999999999999999 99999999999999999
Q ss_pred EEEeCCCCcc
Q 006050 652 MLEAQKKLLS 661 (663)
Q Consensus 652 VVatd~~~l~ 661 (663)
+|.|+..|.+
T Consensus 406 lVlSe~~G~~ 415 (797)
T PLN03063 406 LVLSEFAGAG 415 (797)
T ss_pred EEeeCCcCch
Confidence 9999888764
No 81
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.38 E-value=2.4e-11 Score=129.09 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=45.2
Q ss_pred HHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 598 LSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 598 l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
+.+..+..++|+++|++++++++|++||++|.. +.|++++||||+|+|||+++.
T Consensus 248 l~~~~~~~~~v~~~G~~~~~~~~~~~aDl~I~k------~gg~tl~EA~a~G~PvI~~~~ 301 (391)
T PRK13608 248 LTAKFKSNENVLILGYTKHMNEWMASSQLMITK------PGGITISEGLARCIPMIFLNP 301 (391)
T ss_pred HHHHhccCCCeEEEeccchHHHHHHhhhEEEeC------CchHHHHHHHHhCCCEEECCC
Confidence 333344556899999999999999999999963 358899999999999999964
No 82
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.37 E-value=3e-11 Score=125.38 Aligned_cols=51 Identities=25% Similarity=0.252 Sum_probs=40.8
Q ss_pred HHHHHHHhC-CCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 594 ILEFLSQHS-NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 594 ~L~~l~~~~-gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.++.+++.. ++. |.+.. .++..+|++||++|++| |.+++||||||+|||++
T Consensus 235 ~~~~~~~~~~~~~--v~~~~--~~~~~~~~~aDl~v~~s-------G~~~lEa~a~G~PvI~~ 286 (380)
T PRK00025 235 QIEEALAEYAGLE--VTLLD--GQKREAMAAADAALAAS-------GTVTLELALLKVPMVVG 286 (380)
T ss_pred HHHHHHhhcCCCC--eEEEc--ccHHHHHHhCCEEEECc-------cHHHHHHHHhCCCEEEE
Confidence 355666666 554 55543 48999999999999998 68999999999999976
No 83
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=99.34 E-value=8e-12 Score=143.51 Aligned_cols=187 Identities=17% Similarity=0.233 Sum_probs=120.0
Q ss_pred hcCCEEEEecHHHHHHHHHHhHh-hc-------ccCC---CCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHH
Q 006050 360 DRVKLLVFLSESQTKQWLTWCEE-EK-------LKLR---SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNL 428 (663)
Q Consensus 360 ~rvk~lIflSes~~k~w~~~~~~-~~-------i~l~---s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~ 428 (663)
-.++.+-|-+..-.+.+.+.|.. .+ +.+. .++.++|+||+.+.+....- +++ . +.
T Consensus 188 l~~Dligf~t~~~~r~Fl~~~~~~l~~~~~~~~~~~~gr~~~v~v~p~GID~~~f~~~~~---------~~~-~----~~ 253 (726)
T PRK14501 188 LGADLIGFHTYDYVRHFLSSVLRVLGYETELGEIRLGGRIVRVDAFPMGIDYDKFHNSAQ---------DPE-V----QE 253 (726)
T ss_pred hcCCeEEeCCHHHHHHHHHHHHHHcCCccCCCeEEECCEEEEEEEEECeEcHHHHHHHhc---------Cch-H----HH
Confidence 35677778877777777776664 22 1111 13677899988765532210 011 1 01
Q ss_pred HHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccccc
Q 006050 429 LRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMS 508 (663)
Q Consensus 429 lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~ 508 (663)
..+.+|+.+ .+.++|++|||+++.||+..+|+||..++++.|+. +
T Consensus 254 ~~~~lr~~~---~~~~~il~VgRl~~~Kgi~~~l~A~~~ll~~~p~~-----~--------------------------- 298 (726)
T PRK14501 254 EIRRLRQDL---RGRKIILSIDRLDYTKGIPRRLLAFERFLEKNPEW-----R--------------------------- 298 (726)
T ss_pred HHHHHHHHc---CCCEEEEEecCcccccCHHHHHHHHHHHHHhCccc-----c---------------------------
Confidence 123355553 46789999999999999999999999999888863 0
Q ss_pred ccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCC-
Q 006050 509 DDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNK- 587 (663)
Q Consensus 509 ~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~- 587 (663)
++. .++++|. ++. ++
T Consensus 299 -------------------------------------------------~~v-------------~lv~v~~-~sr-~~~ 314 (726)
T PRK14501 299 -------------------------------------------------GKV-------------RLVQVAV-PSR-TGV 314 (726)
T ss_pred -------------------------------------------------CCE-------------EEEEEec-CCC-cch
Confidence 000 1245542 221 12
Q ss_pred hhH--HHHHHHHHHHhCC----C---CCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHc-----CCC
Q 006050 588 VPY--VKEILEFLSQHSN----L---SKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAF-----GVP 651 (663)
Q Consensus 588 ~~y--~k~~L~~l~~~~g----L---s~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~-----GlP 651 (663)
.+| ++..+..++.+.| . ..-+.|.|..+ +++.+|++|||||+||. .||||+|++||||| |+|
T Consensus 315 ~~~~~l~~~~~~~v~~in~~~~~~~~~pv~~~~~~~~~~~l~~ly~~aDv~v~~S~--~EG~~lv~~Eama~~~~~~g~~ 392 (726)
T PRK14501 315 PQYQEMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPL--RDGMNLVAKEYVASRTDGDGVL 392 (726)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCcceEEEEeCCCCHHHHHHHHHhccEEEeccc--ccccCcccceEEEEcCCCCceE
Confidence 122 3344555554432 1 12345667654 89999999999999998 99999999999999 557
Q ss_pred EEEeCCCCcc
Q 006050 652 MLEAQKKLLS 661 (663)
Q Consensus 652 VVatd~~~l~ 661 (663)
|++..+|+..
T Consensus 393 vls~~~G~~~ 402 (726)
T PRK14501 393 ILSEMAGAAA 402 (726)
T ss_pred EEecccchhH
Confidence 7777766543
No 84
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=99.29 E-value=1.5e-10 Score=118.81 Aligned_cols=160 Identities=16% Similarity=0.168 Sum_probs=107.9
Q ss_pred HhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhC
Q 006050 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMG 438 (663)
Q Consensus 359 l~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elG 438 (663)
...++.+++.++...++ +..+|+. +.++.++++++-|...+.... . .....+++++
T Consensus 139 ~~~ad~~~~~s~~~~~~----l~~~G~~-~~kI~vign~v~d~~~~~~~~-----------~--------~~~~~~~~~~ 194 (363)
T cd03786 139 DKLSDLHFAPTEEARRN----LLQEGEP-PERIFVVGNTMIDALLRLLEL-----------A--------KKELILELLG 194 (363)
T ss_pred HHHhhhccCCCHHHHHH----HHHcCCC-cccEEEECchHHHHHHHHHHh-----------h--------ccchhhhhcc
Confidence 34567667777776655 3445664 346778888865543322110 0 0112356788
Q ss_pred CCCCCEEEEEEecCCC---CCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccc
Q 006050 439 LTDQDMLVLSLSSINP---GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSS 515 (663)
Q Consensus 439 L~~~~~lVl~VGri~p---~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~ 515 (663)
++++..++++.|+... .||++.+++|++.+.+. +.
T Consensus 195 ~~~~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~--~~---------------------------------------- 232 (363)
T cd03786 195 LLPKKYILVTLHRVENVDDGEQLEEILEALAELAEE--DV---------------------------------------- 232 (363)
T ss_pred cCCCCEEEEEeCCccccCChHHHHHHHHHHHHHHhc--CC----------------------------------------
Confidence 9888888889998764 79999999999887321 11
Q ss_pred cccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHH
Q 006050 516 NELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEIL 595 (663)
Q Consensus 516 ~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L 595 (663)
.+++...+. .++.+
T Consensus 233 -----------------------------------------------------------~vi~~~~~~-------~~~~l 246 (363)
T cd03786 233 -----------------------------------------------------------PVVFPNHPR-------TRPRI 246 (363)
T ss_pred -----------------------------------------------------------EEEEECCCC-------hHHHH
Confidence 122221121 23446
Q ss_pred HHHHHhCCC-CCcEEEcCCc--chHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 596 EFLSQHSNL-SKAMLWTPAT--TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 596 ~~l~~~~gL-s~~V~~~G~~--~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
++.++.+++ .++|+|+|.. .++..+|++||++|.+|- | ++.|||++|+|||+++.
T Consensus 247 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~ad~~v~~Sg------g-i~~Ea~~~g~PvI~~~~ 304 (363)
T cd03786 247 REAGLEFLGHHPNVLLISPLGYLYFLLLLKNADLVLTDSG------G-IQEEASFLGVPVLNLRD 304 (363)
T ss_pred HHHHHhhccCCCCEEEECCcCHHHHHHHHHcCcEEEEcCc------c-HHhhhhhcCCCEEeeCC
Confidence 667777776 6789999764 589999999999999992 3 57999999999999863
No 85
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=4.8e-11 Score=112.26 Aligned_cols=65 Identities=32% Similarity=0.468 Sum_probs=57.9
Q ss_pred HHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 595 LEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
+..++...+..+.|.|+|..+ ++..+|+.||++++||. .|+||++++||||+|+|||+++.++..
T Consensus 246 ~~~~~~~~~~~~~v~~~g~~~~~~~~~~~~~~~~~v~ps~--~e~~~~~~~Ea~a~g~pvi~~~~~~~~ 312 (381)
T COG0438 246 LEKLAKKLGLEDNVKFLGYVPDEELAELLASADVFVLPSL--SEGFGLVLLEAMAAGTPVIASDVGGIP 312 (381)
T ss_pred HHHHHHHhCCCCcEEEecccCHHHHHHHHHhCCEEEeccc--cccchHHHHHHHhcCCcEEECCCCChH
Confidence 444777788888999999987 78889999999999999 799999999999999999999998654
No 86
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.26 E-value=4.6e-10 Score=119.99 Aligned_cols=258 Identities=17% Similarity=0.183 Sum_probs=147.8
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhH-HhcCCe-----EEEeCCCC----c--------
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE-LARRKI-----KVLEDRGE----P-------- 304 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~e-L~~~gI-----kVl~~~~~----~-------- 304 (663)
.||+++ ..-||+-+.--.||++|.+.|+++.++... |+.|++ ....++ .+...... .
T Consensus 6 ~ki~i~---aGgtsGhi~paal~~~l~~~~~~~~~~g~g--g~~m~~~g~~~~~~~~~l~v~G~~~~l~~~~~~~~~~~~ 80 (385)
T TIGR00215 6 PTIALV---AGEASGDILGAGLRQQLKEHYPNARFIGVA--GPRMAAEGCEVLYSMEELSVMGLREVLGRLGRLLKIRKE 80 (385)
T ss_pred CeEEEE---eCCccHHHHHHHHHHHHHhcCCCcEEEEEc--cHHHHhCcCccccChHHhhhccHHHHHHHHHHHHHHHHH
Confidence 466666 334677777569999999999998877532 322322 111111 11110000 0
Q ss_pred --hhhhhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEE------EeehhhhhHHHHHHHHhcCCEEEEecHHHHHHH
Q 006050 305 --SFKTSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWW------IMENRREYFDRAKLVLDRVKLLVFLSESQTKQW 376 (663)
Q Consensus 305 --sfk~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvww------i~E~r~~yf~r~k~vl~rvk~lIflSes~~k~w 376 (663)
.+-...+||+|+....++..+.-...++. .+ -+++++ ..+. .+.+.+...++.+++.++...+.+
T Consensus 81 ~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~-~g-ip~v~~i~P~~waw~~-----~~~r~l~~~~d~v~~~~~~e~~~~ 153 (385)
T TIGR00215 81 VVQLAKQAKPDLLVGIDAPDFNLTKELKKKD-PG-IKIIYYISPQVWAWRK-----WRAKKIEKATDFLLAILPFEKAFY 153 (385)
T ss_pred HHHHHHhcCCCEEEEeCCCCccHHHHHHHhh-CC-CCEEEEeCCcHhhcCc-----chHHHHHHHHhHhhccCCCcHHHH
Confidence 01124689999986544433322112221 22 334432 2221 123344456788877777655553
Q ss_pred HHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEE--ecCCC
Q 006050 377 LTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSL--SSINP 454 (663)
Q Consensus 377 ~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~V--Gri~p 454 (663)
. ..++ +..++.+.+.++... +.+ .+...|+++|++++.++|+.+ ||..+
T Consensus 154 ~----~~g~----~~~~vGnPv~~~~~~------------~~~---------~~~~~r~~lgl~~~~~~Ilvl~GSR~ae 204 (385)
T TIGR00215 154 Q----KKNV----PCRFVGHPLLDAIPL------------YKP---------DRKSAREKLGIDHNGETLALLPGSRGSE 204 (385)
T ss_pred H----hcCC----CEEEECCchhhhccc------------cCC---------CHHHHHHHcCCCCCCCEEEEECCCCHHH
Confidence 2 2222 234455554333210 001 123467889998888877665 36666
Q ss_pred -CCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcccc
Q 006050 455 -GKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVR 533 (663)
Q Consensus 455 -~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 533 (663)
.|++..+++|++.+.+..|+. +
T Consensus 205 i~k~~~~ll~a~~~l~~~~p~~-----~---------------------------------------------------- 227 (385)
T TIGR00215 205 VEKLFPLFLKAAQLLEQQEPDL-----R---------------------------------------------------- 227 (385)
T ss_pred HHHhHHHHHHHHHHHHHhCCCe-----E----------------------------------------------------
Confidence 799999999999997665542 0
Q ss_pred cccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCC
Q 006050 534 KNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPA 613 (663)
Q Consensus 534 k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~ 613 (663)
.++.+..+. + ++.++.+.+.++....|.+.+.
T Consensus 228 -----------------------------------------~vi~~~~~~------~-~~~~~~~~~~~~~~~~v~~~~~ 259 (385)
T TIGR00215 228 -----------------------------------------RVLPVVNFK------R-RLQFEQIKAEYGPDLQLHLIDG 259 (385)
T ss_pred -----------------------------------------EEEEeCCch------h-HHHHHHHHHHhCCCCcEEEECc
Confidence 123332221 1 2335556666666667776643
Q ss_pred cchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 614 TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 614 ~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
++..+|++||++|++| |.+++||||||+|+|..
T Consensus 260 --~~~~~l~aADl~V~~S-------Gt~tlEa~a~G~P~Vv~ 292 (385)
T TIGR00215 260 --DARKAMFAADAALLAS-------GTAALEAALIKTPMVVG 292 (385)
T ss_pred --hHHHHHHhCCEEeecC-------CHHHHHHHHcCCCEEEE
Confidence 6778999999999999 67889999999998876
No 87
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=99.24 E-value=5.1e-10 Score=124.38 Aligned_cols=188 Identities=14% Similarity=0.142 Sum_probs=130.9
Q ss_pred cCCEEEEecHHHHHHHHHHhHhh-cccCC----------------------------C---CcEEeecCcchhhhhhhcc
Q 006050 361 RVKLLVFLSESQTKQWLTWCEEE-KLKLR----------------------------S---QPAVVPLSVNDELAFVAGF 408 (663)
Q Consensus 361 rvk~lIflSes~~k~w~~~~~~~-~i~l~----------------------------s---~~~VVp~gVndela~vagi 408 (663)
.++.+=|-+..-.+.+...|.+. +.... . .+.++|.||+.+.+....
T Consensus 188 ~aDliGFqt~~y~~~Fl~~~~r~lg~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~gr~v~v~~~PiGID~~~f~~~~- 266 (487)
T TIGR02398 188 CCDYIGFHIPRYVENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDPERIRSAL- 266 (487)
T ss_pred cCCeEEeCCHHHHHHHHHHHHHHhCCccccccccccccccccccccccccccceeECCEEEEEEEEECEecHHHHHHHh-
Confidence 46777788887777777777642 22110 1 146788888776542211
Q ss_pred ccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccc
Q 006050 409 TCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGR 488 (663)
Q Consensus 409 ~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~ 488 (663)
. +++. +...+.+|+++| +..+|++|+|+++.||+...|+||..+++++|+. +
T Consensus 267 ----~----~~~~-----~~~~~~lr~~~~---~~kiIl~VDRLDy~KGI~~kl~Afe~~L~~~Pe~-----~------- 318 (487)
T TIGR02398 267 ----A----AASI-----REMMERIRSELA---GVKLILSAERVDYTKGILEKLNAYERLLERRPEL-----L------- 318 (487)
T ss_pred ----c----CchH-----HHHHHHHHHHcC---CceEEEEecccccccCHHHHHHHHHHHHHhCccc-----c-------
Confidence 0 1111 112356788888 6789999999999999999999999999999984 0
Q ss_pred ccccccccccccccccccccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEeccc
Q 006050 489 KKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDG 568 (663)
Q Consensus 489 ~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~ 568 (663)
++.
T Consensus 319 ---------------------------------------------------------------------gkv-------- 321 (487)
T TIGR02398 319 ---------------------------------------------------------------------GKV-------- 321 (487)
T ss_pred ---------------------------------------------------------------------Cce--------
Confidence 011
Q ss_pred ccccceEEEEeecCCCCCChhH--HHHHHHHHHHhC-------CCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCC
Q 006050 569 KQQQALKILIGSVGSKSNKVPY--VKEILEFLSQHS-------NLSKAMLWTPATT--RVASLYSAADVYVINSQGLGET 637 (663)
Q Consensus 569 ~~~KdlklliG~~g~~~n~~~y--~k~~L~~l~~~~-------gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~ 637 (663)
.++.||. ++..+-.+| .++.++.++.+. +...-+.+.+..+ ++..+|++|||+++||. .||
T Consensus 322 -----~Lvqi~~-psr~~v~~y~~l~~~v~~~v~~IN~~fg~~~~~pv~~~~~~v~~~el~alYr~ADV~lvT~l--rDG 393 (487)
T TIGR02398 322 -----TLVTACV-PAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWFAMADVMWITPL--RDG 393 (487)
T ss_pred -----EEEEEeC-CCcccchHHHHHHHHHHHHHHHHhhccCCCCCccEEEEcCCCCHHHHHHHHHhCCEEEECcc--ccc
Confidence 1255553 322211222 244466766663 5556678888876 89999999999999999 999
Q ss_pred CcHHHHHHHHcCC----CEEEeCCCCccC
Q 006050 638 FGRVTIEAMAFGV----PMLEAQKKLLSI 662 (663)
Q Consensus 638 FG~ViiEAMA~Gl----PVVatd~~~l~~ 662 (663)
|++|..|+|||+. |+|.|...|.+.
T Consensus 394 mNLVa~Eyva~~~~~~GvLILSefaGaa~ 422 (487)
T TIGR02398 394 LNLVAKEYVAAQGLLDGVLVLSEFAGAAV 422 (487)
T ss_pred cCcchhhHHhhhcCCCCCEEEeccccchh
Confidence 9999999999998 999999888753
No 88
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=99.10 E-value=4.3e-09 Score=109.64 Aligned_cols=54 Identities=22% Similarity=0.235 Sum_probs=44.1
Q ss_pred HhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe-CCCCc
Q 006050 600 QHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA-QKKLL 660 (663)
Q Consensus 600 ~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat-d~~~l 660 (663)
+..+..++|+|+|... +...+|++||+++.+| |.+++||||||+|||++ ++++.
T Consensus 249 ~~~~~~~~v~~~~~~~~~~~~~~l~~ad~vv~~S-------g~~~~EA~a~g~PvI~~~~~~~~ 305 (365)
T TIGR00236 249 KHLGDSKRVHLIEPLEYLDFLNLAANSHLILTDS-------GGVQEEAPSLGKPVLVLRDTTER 305 (365)
T ss_pred HHhCCCCCEEEECCCChHHHHHHHHhCCEEEECC-------hhHHHHHHHcCCCEEECCCCCCC
Confidence 3345667899999765 7889999999999988 45689999999999996 55543
No 89
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=99.06 E-value=3.1e-10 Score=100.86 Aligned_cols=51 Identities=27% Similarity=0.409 Sum_probs=39.9
Q ss_pred CcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 606 ~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
.+|+|.|..+++..+|++||+.++|+. ..|+++..++|||++|+|||+++.
T Consensus 53 ~~v~~~g~~~e~~~~l~~~dv~l~p~~-~~~~~~~k~~e~~~~G~pvi~~~~ 103 (135)
T PF13692_consen 53 PNVRFHGFVEELPEILAAADVGLIPSR-FNEGFPNKLLEAMAAGKPVIASDN 103 (135)
T ss_dssp CTEEEE-S-HHHHHHHHC-SEEEE-BS-S-SCC-HHHHHHHCTT--EEEEHH
T ss_pred CCEEEcCCHHHHHHHHHhCCEEEEEee-CCCcCcHHHHHHHHhCCCEEECCc
Confidence 589999999999999999999999984 378999999999999999999987
No 90
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=98.93 E-value=1.4e-07 Score=101.02 Aligned_cols=80 Identities=23% Similarity=0.286 Sum_probs=71.0
Q ss_pred EEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEE
Q 006050 576 ILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPML 653 (663)
Q Consensus 576 lliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVV 653 (663)
+++|++.+. ++.++++. |+.++.+++++++|.|--..+ ++..+|..|-+-|..-. .|.||+.++|+||+|+=.|
T Consensus 309 ~ivGScRne-eD~ervk~-Lkd~a~~L~i~~~v~F~~N~Py~~lv~lL~~a~iGvh~Mw--NEHFGIsVVEyMAAGlIpi 384 (465)
T KOG1387|consen 309 IIVGSCRNE-EDEERVKS-LKDLAEELKIPKHVQFEKNVPYEKLVELLGKATIGVHTMW--NEHFGISVVEYMAAGLIPI 384 (465)
T ss_pred EEEeccCCh-hhHHHHHH-HHHHHHhcCCccceEEEecCCHHHHHHHhccceeehhhhh--hhhcchhHHHHHhcCceEE
Confidence 677887764 35677776 999999999999999988877 89999999999999987 9999999999999999999
Q ss_pred EeCCCC
Q 006050 654 EAQKKL 659 (663)
Q Consensus 654 atd~~~ 659 (663)
+-+.+|
T Consensus 385 ~h~SgG 390 (465)
T KOG1387|consen 385 VHNSGG 390 (465)
T ss_pred EeCCCC
Confidence 988876
No 91
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=98.78 E-value=4.4e-08 Score=88.13 Aligned_cols=142 Identities=16% Similarity=0.128 Sum_probs=75.3
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEe-----CCC--Cch---------hhhhcC
Q 006050 248 IFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE-----DRG--EPS---------FKTSMK 311 (663)
Q Consensus 248 I~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~-----~~~--~~s---------fk~~~k 311 (663)
..+....||+++++.+|+++|.++||+|++++....+....+ .+.... ... ... .....+
T Consensus 5 ~~~~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 80 (177)
T PF13439_consen 5 NIFLPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPIEEE----LVKIFVKIPYPIRKRFLRSFFFMRRLRRLIKKEK 80 (177)
T ss_dssp CC-TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-SST----EEEE---TT-SSTSS--HHHHHHHHHHHHHHHHT
T ss_pred EecCCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccchhh----ccceeeeeecccccccchhHHHHHHHHHHHHHcC
Confidence 345556899999999999999999999999875544433333 111111 001 011 112358
Q ss_pred ccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhh------------hhH-HH-HHHHHhcCCEEEEecHHHHHHHH
Q 006050 312 ADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRR------------EYF-DR-AKLVLDRVKLLVFLSESQTKQWL 377 (663)
Q Consensus 312 ~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~------------~yf-~r-~k~vl~rvk~lIflSes~~k~w~ 377 (663)
+|+||++......+...... ..++++.+|.... .++ .. ...+.++++.+|++|+.+.+...
T Consensus 81 ~DiVh~~~~~~~~~~~~~~~-----~~~~v~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~vS~~~~~~l~ 155 (177)
T PF13439_consen 81 PDIVHIHGPPAFWIALLACR-----KVPIVYTIHGPYFERRFLKSKLSPYSYLNFRIERKLYKKADRIIAVSESTKDELI 155 (177)
T ss_dssp -SEEECCTTHCCCHHHHHHH-----CSCEEEEE-HHH--HHTTTTSCCCHHHHHHCTTHHHHCCSSEEEESSHHHHHHHH
T ss_pred CCeEEecccchhHHHHHhcc-----CCCEEEEeCCCcccccccccccchhhhhhhhhhhhHHhcCCEEEEECHHHHHHHH
Confidence 99999887433212111111 3456777775431 011 11 12335789999999999888754
Q ss_pred HHhHhhcccCCCCcEEeecCcchhhh
Q 006050 378 TWCEEEKLKLRSQPAVVPLSVNDELA 403 (663)
Q Consensus 378 ~~~~~~~i~l~s~~~VVp~gVndela 403 (663)
+ .+++. .++.|||+||+++.+
T Consensus 156 ~----~~~~~-~ki~vI~ngid~~~F 176 (177)
T PF13439_consen 156 K----FGIPP-EKIHVIYNGIDTDRF 176 (177)
T ss_dssp H----HT--S-S-EEE----B-CCCH
T ss_pred H----hCCcc-cCCEEEECCccHHHc
Confidence 3 45543 579999999988654
No 92
>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=98.60 E-value=2.4e-06 Score=101.61 Aligned_cols=98 Identities=14% Similarity=0.272 Sum_probs=65.4
Q ss_pred cCCEEEEecHHHHHHHHHHhHh-hccc-------CCC---CcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHH
Q 006050 361 RVKLLVFLSESQTKQWLTWCEE-EKLK-------LRS---QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLL 429 (663)
Q Consensus 361 rvk~lIflSes~~k~w~~~~~~-~~i~-------l~s---~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~l 429 (663)
.++.|=|-+..-..++...|.. .+.. ... ++.+.|.||+.+.+...- .. ++ . +..
T Consensus 287 ~aDlIGFqT~~y~rhFl~~c~rlLg~~~~~~~v~~~Gr~v~V~~~PiGID~~~f~~~~-----~~----~~-v----~~~ 352 (934)
T PLN03064 287 AADLVGFHTYDYARHFVSACTRILGLEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRAL-----ET----PQ-V----QQH 352 (934)
T ss_pred cCCeEEeCCHHHHHHHHHHHHHHhCccccCCeEEECCEEEEEEEEeCEEcHHHHHHHh-----cC----hh-H----HHH
Confidence 4677778888777777777764 2221 111 244668888765443210 11 11 1 112
Q ss_pred HHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCC
Q 006050 430 RDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSM 475 (663)
Q Consensus 430 r~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~ 475 (663)
.+.+|+.++ +..+|++|+|+++.||+...|+||..+++++|+.
T Consensus 353 ~~~lr~~~~---g~kiIlgVDRLD~~KGI~~kL~AfE~fL~~~Pe~ 395 (934)
T PLN03064 353 IKELKERFA---GRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEW 395 (934)
T ss_pred HHHHHHHhC---CceEEEEeeccccccCHHHHHHHHHHHHHhCccc
Confidence 345777776 5679999999999999999999999999999984
No 93
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=98.53 E-value=2.9e-05 Score=80.13 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=44.0
Q ss_pred HHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 595 LEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
++.+++.. .+|.+.+++++++++|++||++|.++ |.++.||+|+|+|+|.-.
T Consensus 216 l~~~~~~~---~~i~~~~~~~~m~~lm~~aDl~Is~~-------G~T~~E~~a~g~P~i~i~ 267 (279)
T TIGR03590 216 LKKFAKEY---PNIILFIDVENMAELMNEADLAIGAA-------GSTSWERCCLGLPSLAIC 267 (279)
T ss_pred HHHHHHhC---CCEEEEeCHHHHHHHHHHCCEEEECC-------chHHHHHHHcCCCEEEEE
Confidence 66666643 47999999999999999999999864 478999999999999753
No 94
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=98.45 E-value=1.7e-05 Score=82.95 Aligned_cols=57 Identities=11% Similarity=-0.013 Sum_probs=43.8
Q ss_pred CCCcEEEcCCcc--hHHHHHHHccEEEEcCC---------CCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 604 LSKAMLWTPATT--RVASLYSAADVYVINSQ---------GLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 604 Ls~~V~~~G~~~--dv~~lysaADV~V~pS~---------~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
..++|.|+|..+ +++.+|+. |+.+++.. .+.-++|..+.|+||||+|||+++.+++.
T Consensus 205 ~~~~V~f~G~~~~eel~~~l~~-~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~~~~~~~ 272 (333)
T PRK09814 205 NSANISYKGWFDPEELPNELSK-GFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVWSKAAIA 272 (333)
T ss_pred cCCCeEEecCCCHHHHHHHHhc-CcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEECCCccHH
Confidence 457899999987 78899988 65444331 01236788999999999999999988764
No 95
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=98.26 E-value=4.5e-06 Score=93.84 Aligned_cols=45 Identities=16% Similarity=0.247 Sum_probs=44.1
Q ss_pred CcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEE
Q 006050 606 KAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPML 653 (663)
Q Consensus 606 ~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVV 653 (663)
++|+|.|.++ ++.+.|..|.++|.+|. .|+|+ ..||||++|+|+|
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~arl~id~s~--~eg~~-~~ieAiS~GiPqI 455 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLRLIIDLSK--EPDLY-TQISGISAGIPQI 455 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhheEEEECCC--CCChH-HHHHHHHcCCCee
Confidence 7999999999 99999999999999999 99999 9999999999999
No 96
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=98.26 E-value=7.3e-06 Score=72.56 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=70.7
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCC--CCc----------hhh-----hhcCccEEEE
Q 006050 255 TGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDR--GEP----------SFK-----TSMKADLVIA 317 (663)
Q Consensus 255 gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~--~~~----------sfk-----~~~k~DLVia 317 (663)
||+++.+.+||++|.++||+|.+++....+. .++....++.+.... ... .+. ...++|+||+
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~Dvv~~ 79 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPE-DDEEEEDGVRVHRLPLPRRPWPLRLLRFLRRLRRLLAARRERPDVVHA 79 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GG-G-SEEETTEEEEEE--S-SSSGGGHCCHHHHHHHHCHHCT---SEEEE
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCc-ccccccCCceEEeccCCccchhhhhHHHHHHHHHHHhhhccCCeEEEe
Confidence 7999999999999999999999998654433 334556777765321 111 011 2358999999
Q ss_pred CchhhHHHHHHHHHhCCCCCccEEEEEeehhh--------hhHH-HHHHHHhcCCEEEEecHHHHHHHHHHhHhhcccCC
Q 006050 318 GSAVCATWIDQYITRFPAGGSQVVWWIMENRR--------EYFD-RAKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKLR 388 (663)
Q Consensus 318 nSav~aswi~~yi~~~pa~~~~vvwwi~E~r~--------~yf~-r~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l~ 388 (663)
++.. +.++...+. ... ..++++.+|.... .++. -...++.+++.++++|+...+... +.+++ +
T Consensus 80 ~~~~-~~~~~~~~~-~~~-~~p~v~~~h~~~~~~~~~~~~~~~~~~~~~~~~~ad~vi~~S~~~~~~l~----~~g~~-~ 151 (160)
T PF13579_consen 80 HSPT-AGLVAALAR-RRR-GIPLVVTVHGTLFRRGSRWKRRLYRWLERRLLRRADRVIVVSEAMRRYLR----RYGVP-P 151 (160)
T ss_dssp EHHH-HHHHHHHHH-HHH-T--EEEE-SS-T------HHHHHHHHHHHHHHHH-SEEEESSHHHHHHHH----HH----G
T ss_pred cccc-hhHHHHHHH-Hcc-CCcEEEEECCCchhhccchhhHHHHHHHHHHHhcCCEEEECCHHHHHHHH----HhCCC-C
Confidence 9843 223332222 111 3456666665311 1111 123557789999999999887744 34543 3
Q ss_pred CCcEEeecC
Q 006050 389 SQPAVVPLS 397 (663)
Q Consensus 389 s~~~VVp~g 397 (663)
+++.|||||
T Consensus 152 ~ri~vipnG 160 (160)
T PF13579_consen 152 DRIHVIPNG 160 (160)
T ss_dssp GGEEE----
T ss_pred CcEEEeCcC
Confidence 478999986
No 97
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=98.22 E-value=0.00025 Score=75.62 Aligned_cols=44 Identities=11% Similarity=0.144 Sum_probs=36.3
Q ss_pred cEEEcCCc-chHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 607 AMLWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 607 ~V~~~G~~-~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
.+...++. ++++++|++||++|.-+= +.++.|++++|+|+|.-.
T Consensus 235 ~~~~~~f~~~~m~~~~~~adlvIsr~G------~~t~~E~~~~g~P~I~iP 279 (352)
T PRK12446 235 GYRQFEYVHGELPDILAITDFVISRAG------SNAIFEFLTLQKPMLLIP 279 (352)
T ss_pred CcEEecchhhhHHHHHHhCCEEEECCC------hhHHHHHHHcCCCEEEEc
Confidence 34456887 589999999999888763 568899999999999764
No 98
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=98.16 E-value=1.4e-05 Score=88.40 Aligned_cols=61 Identities=20% Similarity=0.340 Sum_probs=55.1
Q ss_pred HHHHHHHHhCCCCCcEEEcCCcc-hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 593 EILEFLSQHSNLSKAMLWTPATT-RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 593 ~~L~~l~~~~gLs~~V~~~G~~~-dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
+.|..+ +++ ++.+++.|.++ ++.++|..||+|+-.|. +|+|+.++.|||+.|+||||++..
T Consensus 319 ~kL~~L-~~y--~nvvly~~~~~~~l~~ly~~~dlyLdin~--~e~~~~al~eA~~~G~pI~afd~t 380 (438)
T TIGR02919 319 SKLMSL-DKY--DNVKLYPNITTQKIQELYQTCDIYLDINH--GNEILNAVRRAFEYNLLILGFEET 380 (438)
T ss_pred HHHHHH-Hhc--CCcEEECCcChHHHHHHHHhccEEEEccc--cccHHHHHHHHHHcCCcEEEEecc
Confidence 347677 555 78899999888 99999999999999999 999999999999999999999876
No 99
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=98.12 E-value=5.4e-05 Score=86.77 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=58.8
Q ss_pred EEEeecCCCCCC-hhHHHHHHHHHHHhCCCCCcEEEcCCcc-h-HHHHHHHccEEEE-cCCCCCCCCcHHHHHHHHcCCC
Q 006050 576 ILIGSVGSKSNK-VPYVKEILEFLSQHSNLSKAMLWTPATT-R-VASLYSAADVYVI-NSQGLGETFGRVTIEAMAFGVP 651 (663)
Q Consensus 576 lliG~~g~~~n~-~~y~k~~L~~l~~~~gLs~~V~~~G~~~-d-v~~lysaADV~V~-pS~~~~E~FG~ViiEAMA~GlP 651 (663)
|+.|...+.... .+| .+.+..++++...+++|.|+..-+ . ...++++||++++ ||++ .|+.|..-+=||..|.+
T Consensus 428 V~~Gka~p~d~~gk~~-i~~i~~la~~~~~~~kv~f~~~Yd~~lA~~i~aG~Dv~L~~Psr~-~EacGtsqMka~~nGgL 505 (601)
T TIGR02094 428 VFAGKAHPADGEGKEI-IQRIVEFSKRPEFRGRIVFLENYDINLARYLVSGVDVWLNNPRRP-LEASGTSGMKAAMNGVL 505 (601)
T ss_pred EEEEecCcccchHHHH-HHHHHHHHhcccCCCCEEEEcCCCHHHHHHHhhhheeEEeCCCCC-cCCchHHHHHHHHcCCc
Confidence 566764432111 124 444777888766778887766544 4 4578999999999 8864 89999999999999999
Q ss_pred EEEeCCC
Q 006050 652 MLEAQKK 658 (663)
Q Consensus 652 VVatd~~ 658 (663)
.+++--|
T Consensus 506 ~~sv~DG 512 (601)
T TIGR02094 506 NLSILDG 512 (601)
T ss_pred eeecccC
Confidence 9887654
No 100
>PF05693 Glycogen_syn: Glycogen synthase; InterPro: IPR008631 This family consists of the eukaryotic glycogen synthase proteins GYS1, GYS2 and GYS3. Glycogen synthase (GS) is the enzyme responsible for the synthesis of -1,4-linked glucose chains in glycogen. It is the rate limiting enzyme in the synthesis of the polysaccharide, and its activity is highly regulated through phosphorylation at multiple sites and also by allosteric effectors, mainly glucose 6-phosphate (G6P) [].; GO: 0004373 glycogen (starch) synthase activity, 0005978 glycogen biosynthetic process; PDB: 3NB0_C 3RT1_C 3RSZ_D 3O3C_B 3NAZ_B 3NCH_D.
Probab=97.64 E-value=0.0012 Score=75.85 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=35.3
Q ss_pred hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCc
Q 006050 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLL 660 (663)
Q Consensus 616 dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l 660 (663)
+..+++..+|+-|+||. +|++|-+.+|+.|+|+|.|.||..|+
T Consensus 462 ~Y~dfv~GcdLgvFPSY--YEPWGYTPlE~~a~gVPsITTnLsGF 504 (633)
T PF05693_consen 462 DYYDFVRGCDLGVFPSY--YEPWGYTPLECTAFGVPSITTNLSGF 504 (633)
T ss_dssp -HHHHHHHSSEEEE--S--SBSS-HHHHHHHHTT--EEEETTBHH
T ss_pred CHHHHhccCceeeeccc--cccccCChHHHhhcCCceeeccchhH
Confidence 78999999999999999 99999999999999999999998764
No 101
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=97.64 E-value=0.032 Score=60.05 Aligned_cols=44 Identities=32% Similarity=0.341 Sum_probs=37.2
Q ss_pred CCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 605 SKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 605 s~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.++|.+++..+ +...+++.||++|-.|- | .+.||+++|+|||.-
T Consensus 261 ~~~v~l~~~l~~~~~l~Ll~~a~~vitdSS------g-gi~EA~~lg~Pvv~l 306 (365)
T TIGR03568 261 HPNFRLFKSLGQERYLSLLKNADAVIGNSS------S-GIIEAPSFGVPTINI 306 (365)
T ss_pred CCCEEEECCCChHHHHHHHHhCCEEEEcCh------h-HHHhhhhcCCCEEee
Confidence 35799999776 99999999999999984 1 338999999999953
No 102
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=97.44 E-value=0.04 Score=56.34 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=41.9
Q ss_pred CCcEEEcCCc-chHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 605 SKAMLWTPAT-TRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 605 s~~V~~~G~~-~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
.++|++.++. .+..+++++||++|..+ |++ .+.||+++|+|+|.-...+
T Consensus 231 ~~ni~~~~~~~~~~~~~m~~ad~vIs~~-----G~~-t~~Ea~~~g~P~l~ip~~~ 280 (318)
T PF13528_consen 231 PGNIHVRPFSTPDFAELMAAADLVISKG-----GYT-TISEALALGKPALVIPRPG 280 (318)
T ss_pred CCCEEEeecChHHHHHHHHhCCEEEECC-----CHH-HHHHHHHcCCCEEEEeCCC
Confidence 5789999987 79999999999999887 444 5799999999999876543
No 103
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=97.40 E-value=0.052 Score=57.46 Aligned_cols=48 Identities=19% Similarity=0.131 Sum_probs=39.8
Q ss_pred CCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 603 NLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 603 gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
.++++|++.++.+ ...+|..||++|.-. | ..++.|||++|+|+|....
T Consensus 285 ~~~~~v~~~~~~p-~~~ll~~~d~~I~hg-----G-~~t~~eal~~GvP~v~~P~ 332 (401)
T cd03784 285 DLPDNVRVVDFVP-HDWLLPRCAAVVHHG-----G-AGTTAAALRAGVPQLVVPF 332 (401)
T ss_pred CCCCceEEeCCCC-HHHHhhhhheeeecC-----C-chhHHHHHHcCCCEEeeCC
Confidence 4678999999975 678999999999655 3 3688999999999998754
No 104
>PF00982 Glyco_transf_20: Glycosyltransferase family 20; InterPro: IPR001830 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 20 GT20 from CAZY comprises enzymes with only one known activity; alpha, alpha-trehalose-phosphate synthase [UDP-forming] (2.4.1.15 from EC). Synthesis of trehalose in the yeast Saccharomyces cerevisiae is catalysed by the trehalose-6-phosphate (Tre6P) synthase/phosphatase complex, which is composed of at least three different subunits encoded by the genes TPS1, TPS2, and TSL1. Tps1 and Tps2 carry the catalytic activities of trehalose synthesis, namely Tre6P synthase (Tps1) and Tre6P phosphatase (Tps2), while TsI1 has regulatory functions. There is some evidence that TsI1 and Tps3 may share a common function with respect to regulation and/or structural stabilisation of the Tre6P synthase/phosphatase complex in exponentially growing, heat-shocked cells []. OtsA (trehalose-6-phosphate synthase) from Escherichia coli has homology to the full-length TPS1, the N-terminal part of TPS2 and an internal region of TPS3 (TSL1) of yeast [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1UQU_A 2WTX_A 1UQT_B 1GZ5_B.
Probab=97.36 E-value=0.0059 Score=68.59 Aligned_cols=177 Identities=18% Similarity=0.304 Sum_probs=95.6
Q ss_pred cCCEEEEecHHHHHHHHHHhHh-hcccCCCC------------cEEeecCcchhhhh-hhccccCCCCCCCChhhHHHhh
Q 006050 361 RVKLLVFLSESQTKQWLTWCEE-EKLKLRSQ------------PAVVPLSVNDELAF-VAGFTCSLNTPTSSPEKMREKR 426 (663)
Q Consensus 361 rvk~lIflSes~~k~w~~~~~~-~~i~l~s~------------~~VVp~gVndela~-vagi~~slntp~~s~ek~~ekr 426 (663)
.++.|-|-+..-...+++.|.. .+....+. +.+.|.||+.+.+. .+. .|. .
T Consensus 197 ~aDlIgFqt~~~~~nFl~~~~r~lg~~~~~~~~~v~~~Gr~v~v~~~pigId~~~~~~~~~------~~~-----v---- 261 (474)
T PF00982_consen 197 GADLIGFQTFEYARNFLSCCKRLLGLEVDSDRGTVEYNGRRVRVGVFPIGIDPDAFAQLAR------SPE-----V---- 261 (474)
T ss_dssp TSSEEEESSHHHHHHHHHHHHHHS-EEEEETTE-EEETTEEEEEEE------HHHHHHHHH-------S-----------
T ss_pred cCCEEEEecHHHHHHHHHHHHHHcCCcccCCCceEEECCEEEEEEEeeccCChHHHHhhcc------ChH-----H----
Confidence 5788889898888888888875 23332222 45567777654321 111 010 0
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCCChhhhhhcccccccccccccccccccccccc
Q 006050 427 NLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQ 506 (663)
Q Consensus 427 ~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~ 506 (663)
......++++++ ++..+|+.+.|++.-||+..=++||..++++.|+. +
T Consensus 262 ~~~~~~l~~~~~--~~~~ii~gvDrld~~kGi~~kl~Afe~fL~~~P~~-----~------------------------- 309 (474)
T PF00982_consen 262 QERAEELREKFK--GKRKIIVGVDRLDYTKGIPEKLRAFERFLERYPEY-----R------------------------- 309 (474)
T ss_dssp -HHHHHHHHHTT--T-SEEEEEE--B-GGG-HHHHHHHHHHHHHH-GGG-----T-------------------------
T ss_pred HHHHHHHHHhcC--CCcEEEEEeccchhhcCHHHHHHHHHHHHHhCcCc-----c-------------------------
Confidence 112345677775 23489999999999999999999999999999984 1
Q ss_pred ccccccccccccccccccccccCcccccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCC
Q 006050 507 MSDDVGLSSNELSVSSESFTQLNEPVRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSN 586 (663)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~p~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n 586 (663)
+++ .++-|+. .+..+
T Consensus 310 ---------------------------------------------------~kv-------------~liQi~~-psr~~ 324 (474)
T PF00982_consen 310 ---------------------------------------------------GKV-------------VLIQIAV-PSRED 324 (474)
T ss_dssp ---------------------------------------------------TTE-------------EEEEE---B-STT
T ss_pred ---------------------------------------------------CcE-------------EEEEEee-ccCcc
Confidence 000 1233333 22222
Q ss_pred ChhH--HHHHHHHHHHh----CCCCC--cEEEc-CCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCC
Q 006050 587 KVPY--VKEILEFLSQH----SNLSK--AMLWT-PATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVP 651 (663)
Q Consensus 587 ~~~y--~k~~L~~l~~~----~gLs~--~V~~~-G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlP 651 (663)
..+| .++.+..++.+ +|-.+ -|.+. +..+ +...+|++|||++++|. .+|+-+|..|+.||..+
T Consensus 325 ~~~y~~~~~~v~~~v~~IN~~~g~~~~~PI~~~~~~~~~~~~~aly~~aDv~lvTsl--rDGmNLva~Eyva~q~~ 398 (474)
T PF00982_consen 325 VPEYQELRREVEELVGRINGKYGTPDWTPIIYIYRSLSFEELLALYRAADVALVTSL--RDGMNLVAKEYVACQDD 398 (474)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH-BTTB-SEEEE-S---HHHHHHHHHH-SEEEE--S--SBS--HHHHHHHHHS-T
T ss_pred chhHHHHHHHHHHHHHHHHhhcccCCceeEEEEecCCCHHHHHHHHHhhhhEEecch--hhccCCcceEEEEEecC
Confidence 2222 23335555544 44333 24443 3333 89999999999999999 99999999999999765
No 105
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=97.28 E-value=0.037 Score=60.20 Aligned_cols=43 Identities=26% Similarity=0.352 Sum_probs=38.5
Q ss_pred EEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 608 V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
+...++.+|++.+|++||+.+.=+= +.++.|+.|+|+|+|--.
T Consensus 237 ~~v~~f~~dm~~~~~~ADLvIsRaG------a~Ti~E~~a~g~P~IliP 279 (357)
T COG0707 237 VRVLPFIDDMAALLAAADLVISRAG------ALTIAELLALGVPAILVP 279 (357)
T ss_pred EEEeeHHhhHHHHHHhccEEEeCCc------ccHHHHHHHhCCCEEEeC
Confidence 9999999999999999999998773 679999999999998543
No 106
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.27 E-value=0.003 Score=74.72 Aligned_cols=84 Identities=14% Similarity=0.163 Sum_probs=61.7
Q ss_pred EEEeecCCCCCC-hhHHHHHHHHHHHhCCCCCcEEEcCCcc-h-HHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCE
Q 006050 576 ILIGSVGSKSNK-VPYVKEILEFLSQHSNLSKAMLWTPATT-R-VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPM 652 (663)
Q Consensus 576 lliG~~g~~~n~-~~y~k~~L~~l~~~~gLs~~V~~~G~~~-d-v~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPV 652 (663)
|+.|...+..+. ..+.+. +..+++....+++|.|+..-+ . ...++++|||+++||+--.|+.|..-+=||.-|.+-
T Consensus 517 IfaGKAhP~d~~gK~iIk~-i~~~a~~p~~~~kVvfle~Yd~~lA~~LvaG~DvwLn~prrp~EAsGTSgMKA~~NG~Ln 595 (778)
T cd04299 517 IFAGKAHPADEPGKELIQE-IVEFSRRPEFRGRIVFLEDYDMALARHLVQGVDVWLNTPRRPLEASGTSGMKAALNGGLN 595 (778)
T ss_pred EEEEecCccchHHHHHHHH-HHHHHhCcCCCCcEEEEcCCCHHHHHHHHhhhhhcccCCCCCCCCCccchHHHHHcCCee
Confidence 556775543322 233333 666677667778888877655 4 457899999999999866899999999999999999
Q ss_pred EEeCCCCc
Q 006050 653 LEAQKKLL 660 (663)
Q Consensus 653 Vatd~~~l 660 (663)
+++--|-.
T Consensus 596 lSvlDGww 603 (778)
T cd04299 596 LSVLDGWW 603 (778)
T ss_pred eecccCcc
Confidence 88766543
No 107
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.074 Score=58.34 Aligned_cols=69 Identities=22% Similarity=0.223 Sum_probs=50.0
Q ss_pred HHHHHHHHHhCCCCCcEEE-cCC--cchHHHHHHHccEE--EEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCccC
Q 006050 592 KEILEFLSQHSNLSKAMLW-TPA--TTRVASLYSAADVY--VINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLSI 662 (663)
Q Consensus 592 k~~L~~l~~~~gLs~~V~~-~G~--~~dv~~lysaADV~--V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~~ 662 (663)
+|...+.+.+.++. +|.+ ++- .+|.+.+++.||+- +.+|- -+=-+|+-+++-+-||+||+|-+-+-|.+
T Consensus 305 kE~Y~~~I~~~~~~-~v~~~tpWL~aEDYP~ll~saDlGVcLHtSS-SGLDLPMKVVDMFGcglPvcA~~fkcl~E 378 (444)
T KOG2941|consen 305 KEKYSQEIHEKNLQ-HVQVCTPWLEAEDYPKLLASADLGVCLHTSS-SGLDLPMKVVDMFGCGLPVCAVNFKCLDE 378 (444)
T ss_pred hHHHHHHHHHhccc-ceeeeecccccccchhHhhccccceEeeecC-cccCcchhHHHhhcCCCceeeecchhHHH
Confidence 45566677778885 4433 332 45999999999954 44552 26678999999999999999988766543
No 108
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=97.18 E-value=0.056 Score=59.28 Aligned_cols=52 Identities=27% Similarity=0.314 Sum_probs=37.6
Q ss_pred HHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 595 LEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
+....+..+..-.+... ..+..++|++||+.+..| |-+++||+.+|+|.|..
T Consensus 234 i~~~~~~~~~~~~~~~~--~~~~~~~m~~ad~al~~S-------GTaTLE~Al~g~P~Vv~ 285 (373)
T PF02684_consen 234 IEEILAEYPPDVSIVII--EGESYDAMAAADAALAAS-------GTATLEAALLGVPMVVA 285 (373)
T ss_pred HHHHHHhhCCCCeEEEc--CCchHHHHHhCcchhhcC-------CHHHHHHHHhCCCEEEE
Confidence 44455545443344332 346778999999999999 57999999999997653
No 109
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=97.12 E-value=0.34 Score=54.18 Aligned_cols=201 Identities=16% Similarity=0.195 Sum_probs=108.6
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEcCCCC-ChhHHhcCCeEEEeCCCCch-----hhhhcCcc
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGG-LMPELARRKIKVLEDRGEPS-----FKTSMKAD 313 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~--G~~V~vVvLs~~Gg-L~~eL~~~gIkVl~~~~~~s-----fk~~~k~D 313 (663)
+..=++-+|..|.| --+....|.++|.+. +..+.+.+.+..|. ...++-...+.+...+.+.. |-...++|
T Consensus 47 ~~~p~vWiHaaSVG-Ev~a~~pLv~~l~~~~P~~~ilvTt~T~Tg~e~a~~~~~~~v~h~YlP~D~~~~v~rFl~~~~P~ 125 (419)
T COG1519 47 PEGPLVWIHAASVG-EVLAALPLVRALRERFPDLRILVTTMTPTGAERAAALFGDSVIHQYLPLDLPIAVRRFLRKWRPK 125 (419)
T ss_pred CCCCeEEEEecchh-HHHHHHHHHHHHHHhCCCCCEEEEecCccHHHHHHHHcCCCeEEEecCcCchHHHHHHHHhcCCC
Confidence 33457788998864 446778899999988 77776665554441 22333334466654444433 34467899
Q ss_pred EEEECchhhHHHHHHHHHhCCCCCccEEEEEeeh-h--hhhHHH---HHHHHhcCCEEEEecHHHHHHHHHHhHhhcccC
Q 006050 314 LVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN-R--REYFDR---AKLVLDRVKLLVFLSESQTKQWLTWCEEEKLKL 387 (663)
Q Consensus 314 LVianSav~aswi~~yi~~~pa~~~~vvwwi~E~-r--~~yf~r---~k~vl~rvk~lIflSes~~k~w~~~~~~~~i~l 387 (663)
++|.--.- -|..-..+....+.+.++--..-. | ..|-.+ .+.++..++.++.-|+...+.+ ...|++.
T Consensus 126 l~Ii~EtE--lWPnli~e~~~~~~p~~LvNaRLS~rS~~~y~k~~~~~~~~~~~i~li~aQse~D~~Rf----~~LGa~~ 199 (419)
T COG1519 126 LLIIMETE--LWPNLINELKRRGIPLVLVNARLSDRSFARYAKLKFLARLLFKNIDLILAQSEEDAQRF----RSLGAKP 199 (419)
T ss_pred EEEEEecc--ccHHHHHHHHHcCCCEEEEeeeechhhhHHHHHHHHHHHHHHHhcceeeecCHHHHHHH----HhcCCcc
Confidence 98754221 144333333233344332211000 0 112111 3456778888888888766553 3455532
Q ss_pred CCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHH
Q 006050 388 RSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQL 467 (663)
Q Consensus 388 ~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~ 467 (663)
|.-.|. +.|.. .++ +.. ....+..|+.++.+ .++++..|. + ..--.+++++++.
T Consensus 200 -----v~v~GN---lKfd~------~~~---~~~-----~~~~~~~r~~l~~~--r~v~iaaST-H-~GEeei~l~~~~~ 253 (419)
T COG1519 200 -----VVVTGN---LKFDI------EPP---PQL-----AAELAALRRQLGGH--RPVWVAAST-H-EGEEEIILDAHQA 253 (419)
T ss_pred -----eEEecc---eeecC------CCC---hhh-----HHHHHHHHHhcCCC--CceEEEecC-C-CchHHHHHHHHHH
Confidence 222221 11111 111 111 12345678888865 566666666 3 3345678999999
Q ss_pred hHHhCCCC
Q 006050 468 MIEQEPSM 475 (663)
Q Consensus 468 l~e~~P~~ 475 (663)
++++.|+.
T Consensus 254 l~~~~~~~ 261 (419)
T COG1519 254 LKKQFPNL 261 (419)
T ss_pred HHhhCCCc
Confidence 99988874
No 110
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=97.09 E-value=0.019 Score=51.59 Aligned_cols=95 Identities=16% Similarity=0.123 Sum_probs=59.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCc--hh-----------hhhc
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEP--SF-----------KTSM 310 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~--sf-----------k~~~ 310 (663)
|||+|.... ...++++|.+|.+.|++|++++.. ++........++++++..... .+ -...
T Consensus 1 KIl~i~~~~-----~~~~~~~~~~L~~~g~~V~ii~~~--~~~~~~~~~~~i~~~~~~~~~k~~~~~~~~~~l~k~ik~~ 73 (139)
T PF13477_consen 1 KILLIGNTP-----STFIYNLAKELKKRGYDVHIITPR--NDYEKYEIIEGIKVIRLPSPRKSPLNYIKYFRLRKIIKKE 73 (139)
T ss_pred CEEEEecCc-----HHHHHHHHHHHHHCCCEEEEEEcC--CCchhhhHhCCeEEEEecCCCCccHHHHHHHHHHHHhccC
Confidence 677886655 346889999999999999999863 222444456788887654111 11 1235
Q ss_pred CccEEEECchhhHHHHHHHHHhCCCCCccEEEEEee
Q 006050 311 KADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIME 346 (663)
Q Consensus 311 k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E 346 (663)
++|+||+++......+..+++... +..++++..|.
T Consensus 74 ~~DvIh~h~~~~~~~~~~l~~~~~-~~~~~i~~~hg 108 (139)
T PF13477_consen 74 KPDVIHCHTPSPYGLFAMLAKKLL-KNKKVIYTVHG 108 (139)
T ss_pred CCCEEEEecCChHHHHHHHHHHHc-CCCCEEEEecC
Confidence 899999998644333333333332 22467777764
No 111
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=97.07 E-value=0.085 Score=60.73 Aligned_cols=282 Identities=14% Similarity=0.115 Sum_probs=160.6
Q ss_pred ccccccccCCccccccccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC-CChhH-HhcCCeEEEeC
Q 006050 223 PEKRSGTCDRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPE-LARRKIKVLED 300 (663)
Q Consensus 223 ~~~~~~~c~~k~~~~~~~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G-gL~~e-L~~~gIkVl~~ 300 (663)
+.-|--.|+ +.-++..++.||=+|+|.|.-.-.--.+..+-+++.+.-++|.+..+...+ +.+++ +...--++++.
T Consensus 242 ~~~~~~~~~--~~~~~~~~rlRvGylS~dlr~Havg~l~~~v~e~hDRdkfEvfay~~g~~~~dal~~rI~a~~~~~~~~ 319 (620)
T COG3914 242 ELVRFPIRD--ENIKRNGKRLRVGYLSSDLRSHAVGFLLRWVFEYHDRDKFEVFAYSLGPPHTDALQERISAAVEKWYPI 319 (620)
T ss_pred Cccccccch--hhccccccceeEEEeccccccchHHHHHHHHHHHhchhheEEEEEecCCCCchhHHHHHHHhhhheecc
Confidence 344445555 224455567899999999987666667778888888888999988776322 22322 22222234444
Q ss_pred CC--Cchhh---hhcCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeehhhhhHHHHHHHHhcCCEEE----EecHH
Q 006050 301 RG--EPSFK---TSMKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMENRREYFDRAKLVLDRVKLLV----FLSES 371 (663)
Q Consensus 301 ~~--~~sfk---~~~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~r~~yf~r~k~vl~rvk~lI----flSes 371 (663)
++ +.... ..-..||.+--+....--..+.++|.|+- -+|-| . -|+. ..-....+.+| .+.+.
T Consensus 320 ~~~dd~e~a~~I~~d~IdILvDl~g~T~d~r~~v~A~RpAP-iqvsw-l-----Gy~a--T~g~p~~DY~I~D~y~vPp~ 390 (620)
T COG3914 320 GRMDDAEIANAIRTDGIDILVDLDGHTVDTRCQVFAHRPAP-IQVSW-L-----GYPA--TTGSPNMDYFISDPYTVPPT 390 (620)
T ss_pred CCcCHHHHHHHHHhcCCeEEEeccCceeccchhhhhcCCCc-eEEee-c-----cccc--ccCCCcceEEeeCceecCch
Confidence 32 11111 12346666532211111133566677753 23444 3 1211 00011223222 23455
Q ss_pred HHHHHHHHhHhhcccCCCCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHHHHHHHHHHhCCCCCCEEEEEEec
Q 006050 372 QTKQWLTWCEEEKLKLRSQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNLLRDSVRKEMGLTDQDMLVLSLSS 451 (663)
Q Consensus 372 ~~k~w~~~~~~~~i~l~s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~lr~~vR~elGL~~~~~lVl~VGr 451 (663)
...+|.+... +++ -....++. .- .-||. + -|.++||+++.++++|.++
T Consensus 391 ae~yysEkl~----RLp----~cy~p~d~-~~--------~v~p~--~-------------sR~~lglp~~avVf~c~~n 438 (620)
T COG3914 391 AEEYYSEKLW----RLP----QCYQPVDG-FE--------PVTPP--P-------------SRAQLGLPEDAVVFCCFNN 438 (620)
T ss_pred HHHHHHHHHH----hcc----cccCCCCC-cc--------cCCCC--c-------------chhhcCCCCCeEEEEecCC
Confidence 5566654332 221 01111211 10 01121 1 2678999999988777765
Q ss_pred CCCCCCHHHHHHHHHHhHHhCCCCChhhhhhccccccccccccccccccccccccccccccccccccccccccccccCcc
Q 006050 452 INPGKGQLLLVESAQLMIEQEPSMDDSKIRKSRNVGRKKSSLTSRHHLRGRGLLQMSDDVGLSSNELSVSSESFTQLNEP 531 (663)
Q Consensus 452 i~p~KGqdlLLeA~~~l~e~~P~~~~~k~~~~~~~~~~~~~~~~~h~lr~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p 531 (663)
..|=..-+..-+-+++..-|+-
T Consensus 439 --~~K~~pev~~~wmqIL~~vP~S-------------------------------------------------------- 460 (620)
T COG3914 439 --YFKITPEVFALWMQILSAVPNS-------------------------------------------------------- 460 (620)
T ss_pred --cccCCHHHHHHHHHHHHhCCCc--------------------------------------------------------
Confidence 5566666777777787777761
Q ss_pred cccccCCCCcccccCCccccccCCCCCcceEEEecccccccceEEEEeecCCCCCChhHHHHHHHHHHHhCCCC-CcEEE
Q 006050 532 VRKNLLSPSLFTSIGNTDAVSFGSGHLRRKVLSKSDGKQQQALKILIGSVGSKSNKVPYVKEILEFLSQHSNLS-KAMLW 610 (663)
Q Consensus 532 ~~k~~~~~~~f~~~~~~~~~~~~~~~~r~kvl~~gr~~~~KdlklliG~~g~~~n~~~y~k~~L~~l~~~~gLs-~~V~~ 610 (663)
++++.|. | ++ +-+...|+.++++.|+. ++..|
T Consensus 461 ------------------------------------------vl~L~~~-~---~~-~~~~~~l~~la~~~Gv~~eRL~f 493 (620)
T COG3914 461 ------------------------------------------VLLLKAG-G---DD-AEINARLRDLAEREGVDSERLRF 493 (620)
T ss_pred ------------------------------------------EEEEecC-C---Cc-HHHHHHHHHHHHHcCCChhheee
Confidence 1233332 2 12 34677899999999995 78999
Q ss_pred cCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 611 TPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 611 ~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.|... +....|..||+|+=+-- =+=.-+++||+-+|+|||+-
T Consensus 494 ~p~~~~~~h~a~~~iADlvLDTyP---Y~g~TTa~daLwm~vPVlT~ 537 (620)
T COG3914 494 LPPAPNEDHRARYGIADLVLDTYP---YGGHTTASDALWMGVPVLTR 537 (620)
T ss_pred cCCCCCHHHHHhhchhheeeeccc---CCCccchHHHHHhcCceeee
Confidence 99876 77899999999986642 12335789999999999974
No 112
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=96.83 E-value=0.0058 Score=68.71 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=39.5
Q ss_pred HHHHHHHHHhCCCC-CcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 592 KEILEFLSQHSNLS-KAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 592 k~~L~~l~~~~gLs-~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
++.++...++.|++ +++.|.+..+ +-...|+.+||++=+.- =+=|.+++||+.+|+|||+-...
T Consensus 327 ~~~l~~~~~~~Gv~~~Ri~f~~~~~~~ehl~~~~~~DI~LDT~p---~nG~TTt~dALwmGVPvVTl~G~ 393 (468)
T PF13844_consen 327 EARLRRRFAAHGVDPDRIIFSPVAPREEHLRRYQLADICLDTFP---YNGGTTTLDALWMGVPVVTLPGE 393 (468)
T ss_dssp HHHHHHHHHHTTS-GGGEEEEE---HHHHHHHGGG-SEEE--SS---S--SHHHHHHHHHT--EEB---S
T ss_pred HHHHHHHHHHcCCChhhEEEcCCCCHHHHHHHhhhCCEEeeCCC---CCCcHHHHHHHHcCCCEEeccCC
Confidence 34577777778886 7899998765 45567889999998763 13367899999999999986544
No 113
>PRK10117 trehalose-6-phosphate synthase; Provisional
Probab=96.79 E-value=0.016 Score=65.37 Aligned_cols=97 Identities=16% Similarity=0.218 Sum_probs=64.2
Q ss_pred cCCEEEEecHHHHHHHHHHhHhh-cccCCC-----------CcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhhHH
Q 006050 361 RVKLLVFLSESQTKQWLTWCEEE-KLKLRS-----------QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKRNL 428 (663)
Q Consensus 361 rvk~lIflSes~~k~w~~~~~~~-~i~l~s-----------~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr~~ 428 (663)
.++.|=|-+..-...+...|... +..... .+.+.|.||+.+.+.-.. .+| . . +
T Consensus 179 ~aDlIGFqt~~y~rnFl~~~~~~lg~~~~~~~~v~~~gr~v~v~~~PigID~~~~~~~a-----~~~----~-~----~- 243 (474)
T PRK10117 179 DYDLLGFQTENDRLAFLDCLSNLTRVTTRSGKSHTAWGKAFRTEVYPIGIEPDEIAKQA-----AGP----L-P----P- 243 (474)
T ss_pred hCccceeCCHHHHHHHHHHHHHHcCCcccCCCeEEECCeEEEEEEEECeEcHHHHHHHh-----hch----H-H----H-
Confidence 45667777777777777777642 222111 245567777765432111 011 1 0 1
Q ss_pred HHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCC
Q 006050 429 LRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSM 475 (663)
Q Consensus 429 lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~ 475 (663)
..+.+|++++ +..+|+.|-|++.-||+..=++||..+++++|+.
T Consensus 244 ~~~~lr~~~~---~~~lilgVDRLDytKGi~~rl~Afe~fL~~~Pe~ 287 (474)
T PRK10117 244 KLAQLKAELK---NVQNIFSVERLDYSKGLPERFLAYEALLEKYPQH 287 (474)
T ss_pred HHHHHHHHcC---CCeEEEEecccccccCHHHHHHHHHHHHHhChhh
Confidence 1245677775 5679999999999999999999999999999985
No 114
>COG0380 OtsA Trehalose-6-phosphate synthase [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.062 Score=60.90 Aligned_cols=100 Identities=19% Similarity=0.326 Sum_probs=68.0
Q ss_pred hcCCEEEEecHHHHHHHHHHhHhhc-------ccCC------CCcEEeecCcchhhhhhhccccCCCCCCCChhhHHHhh
Q 006050 360 DRVKLLVFLSESQTKQWLTWCEEEK-------LKLR------SQPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREKR 426 (663)
Q Consensus 360 ~rvk~lIflSes~~k~w~~~~~~~~-------i~l~------s~~~VVp~gVndela~vagi~~slntp~~s~ek~~ekr 426 (663)
-.++.+=|-+++-...+...|.... +... .+....|.|++.+.+.-+. ..|... .+
T Consensus 202 l~~dligFqt~~y~~nF~~~~~r~~~~~~~~~~~~~~~~~~~v~v~a~PIgID~~~~~~~~-----~~~~v~-~~----- 270 (486)
T COG0380 202 LGADLIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERAL-----KSPSVQ-EK----- 270 (486)
T ss_pred hcCCeeEecCHHHHHHHHHHHHHhccccccccccccccCCceEEEEEEeeecCHHHHHHhh-----cCCchh-hH-----
Confidence 3567777888888888887777532 2211 2346678888776443222 222221 11
Q ss_pred HHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCC
Q 006050 427 NLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSM 475 (663)
Q Consensus 427 ~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~ 475 (663)
-.+++++++ .+..+|+++-|++.-||...=+.||.++++++|+.
T Consensus 271 ---~~el~~~~~--~~~kiivgvDRlDy~kGi~~rl~Afe~lL~~~Pe~ 314 (486)
T COG0380 271 ---VLELKAELG--RNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEW 314 (486)
T ss_pred ---HHHHHHHhc--CCceEEEEehhcccccCcHHHHHHHHHHHHhChhh
Confidence 134556655 34789999999999999999999999999999985
No 115
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=96.58 E-value=0.39 Score=56.01 Aligned_cols=31 Identities=16% Similarity=0.248 Sum_probs=28.2
Q ss_pred HHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEE
Q 006050 617 VASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLE 654 (663)
Q Consensus 617 v~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVa 654 (663)
-.+++++||+.+..| |-|++||+.+|+|.|.
T Consensus 482 ~~~~m~aaD~aLaaS-------GTaTLEaAL~g~PmVV 512 (608)
T PRK01021 482 RYELMRECDCALAKC-------GTIVLETALNQTPTIV 512 (608)
T ss_pred hHHHHHhcCeeeecC-------CHHHHHHHHhCCCEEE
Confidence 379999999999999 6799999999999776
No 116
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=96.55 E-value=0.29 Score=53.11 Aligned_cols=44 Identities=18% Similarity=0.234 Sum_probs=35.3
Q ss_pred EEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 608 MLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 608 V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
+...+..-+..+++.-||++|--+. --..||-..|+|.|.+-.+
T Consensus 233 ~~i~~~~vd~~~Ll~~a~l~Ig~gg-------TMa~EAA~LGtPaIs~~~g 276 (335)
T PF04007_consen 233 VIIPPEPVDGLDLLYYADLVIGGGG-------TMAREAALLGTPAISCFPG 276 (335)
T ss_pred ccccCCCCCHHHHHHhcCEEEeCCc-------HHHHHHHHhCCCEEEecCC
Confidence 5555555588899999999998875 4569999999999987554
No 117
>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]
Probab=96.55 E-value=0.023 Score=68.17 Aligned_cols=100 Identities=17% Similarity=0.272 Sum_probs=66.2
Q ss_pred cCCEEEEecHHHHHHHHHHhHh-hcccCCC--------------CcEEeecCcchhhhhhhccccCCCCCCCChhhHHHh
Q 006050 361 RVKLLVFLSESQTKQWLTWCEE-EKLKLRS--------------QPAVVPLSVNDELAFVAGFTCSLNTPTSSPEKMREK 425 (663)
Q Consensus 361 rvk~lIflSes~~k~w~~~~~~-~~i~l~s--------------~~~VVp~gVndela~vagi~~slntp~~s~ek~~ek 425 (663)
.++.|=|-+..-..+++..|.. .|+.... .+.+.|.||+.+.+.-. ..+ ++.. +
T Consensus 257 ~aDlIGFht~~yar~Fl~~~~r~lgl~~~~~~g~~~~~~~Gr~v~v~~~PigId~~~~~~~-----~~~----~~~~-~- 325 (854)
T PLN02205 257 NSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSV-----LSL----PETE-A- 325 (854)
T ss_pred cCCeEEecCHHHHHHHHHHHHHHhCCcccCCCcceeEEECCcEEEEEEEeCeEcHHHHHHH-----hcC----hhHH-H-
Confidence 4677778888888888887764 2332211 14567778776543211 111 1111 1
Q ss_pred hHHHHHHHHHHhCCCCCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCC
Q 006050 426 RNLLRDSVRKEMGLTDQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSM 475 (663)
Q Consensus 426 r~~lr~~vR~elGL~~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~ 475 (663)
..+.+++.++- ++..+|+.|-|++.-||+..=|+||.++++++|+.
T Consensus 326 ---~~~~l~~~~~~-~~~~~ilgVDrlD~~KGi~~kl~A~e~~L~~~P~~ 371 (854)
T PLN02205 326 ---KVKELIKQFCD-QDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEW 371 (854)
T ss_pred ---HHHHHHHHhcc-CCCEEEEEccCcccccCHHHHHHHHHHHHHhCccc
Confidence 12346666652 35689999999999999999999999999999985
No 118
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=96.37 E-value=0.32 Score=53.75 Aligned_cols=33 Identities=36% Similarity=0.485 Sum_probs=28.8
Q ss_pred hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 616 dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.-...+.+||+-+..| |-+++|+|.+|+|.|.+
T Consensus 257 ~~~~a~~~aD~al~aS-------GT~tLE~aL~g~P~Vv~ 289 (381)
T COG0763 257 EKRKAFAAADAALAAS-------GTATLEAALAGTPMVVA 289 (381)
T ss_pred hHHHHHHHhhHHHHhc-------cHHHHHHHHhCCCEEEE
Confidence 5567899999999999 57999999999997754
No 119
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=95.48 E-value=0.008 Score=51.29 Aligned_cols=33 Identities=24% Similarity=0.263 Sum_probs=28.0
Q ss_pred EEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 627 YVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 627 ~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
++-|+. .++++..++||||||+|||+.+..++.
T Consensus 2 ~Ln~~~--~~~~~~r~~E~~a~G~~vi~~~~~~~~ 34 (92)
T PF13524_consen 2 NLNPSR--SDGPNMRIFEAMACGTPVISDDSPGLR 34 (92)
T ss_pred EeeCCC--CCCCchHHHHHHHCCCeEEECChHHHH
Confidence 456777 799999999999999999999876543
No 120
>PF09314 DUF1972: Domain of unknown function (DUF1972); InterPro: IPR015393 This domain is functionally uncharacterised and found in bacterial glycosyltransferases and rhamnosyltransferases.
Probab=95.12 E-value=0.94 Score=45.57 Aligned_cols=149 Identities=15% Similarity=0.151 Sum_probs=84.3
Q ss_pred CeEEEEeCC---CCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeC--CCCc---h-------hh
Q 006050 243 RKFILIFHE---LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED--RGEP---S-------FK 307 (663)
Q Consensus 243 kKILLI~he---Ls~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~--~~~~---s-------fk 307 (663)
+||.+|-+- -..||-|..+=+|+..|.++|++|+|.+.+...+. .+-.-.|++++.. .... + +.
T Consensus 2 kkIaIiGtrGIPa~YGGfET~ve~L~~~l~~~g~~v~Vyc~~~~~~~-~~~~y~gv~l~~i~~~~~g~~~si~yd~~sl~ 80 (185)
T PF09314_consen 2 KKIAIIGTRGIPARYGGFETFVEELAPRLVSKGIDVTVYCRSDYYPY-KEFEYNGVRLVYIPAPKNGSAESIIYDFLSLL 80 (185)
T ss_pred ceEEEEeCCCCCcccCcHHHHHHHHHHHHhcCCceEEEEEccCCCCC-CCcccCCeEEEEeCCCCCCchHHHHHHHHHHH
Confidence 677777665 34789999999999999999999998875543322 2222356665432 2211 1 11
Q ss_pred hh--------cCccEEEECchhhHHHHHHHHHhCCCCCccEEEEEeeh----------hhhhHHHHHHH-HhcCCEEEEe
Q 006050 308 TS--------MKADLVIAGSAVCATWIDQYITRFPAGGSQVVWWIMEN----------RREYFDRAKLV-LDRVKLLVFL 368 (663)
Q Consensus 308 ~~--------~k~DLVianSav~aswi~~yi~~~pa~~~~vvwwi~E~----------r~~yf~r~k~v-l~rvk~lIfl 368 (663)
.+ .+.|+|+....-.+.++.-++..+...+.+++--++.. .+.|+.-++.+ ...++.+|+.
T Consensus 81 ~al~~~~~~~~~~~ii~ilg~~~g~~~~~~~r~~~~~g~~v~vN~DGlEWkR~KW~~~~k~~lk~~E~~avk~ad~lIaD 160 (185)
T PF09314_consen 81 HALRFIKQDKIKYDIILILGYGIGPFFLPFLRKLRKKGGKVVVNMDGLEWKRAKWGRPAKKYLKFSEKLAVKYADRLIAD 160 (185)
T ss_pred HHHHHHhhccccCCEEEEEcCCccHHHHHHHHhhhhcCCcEEECCCcchhhhhhcCHHHHHHHHHHHHHHHHhCCEEEEc
Confidence 11 14567764332112222233333333333444322111 12344444433 4678999999
Q ss_pred cHHHHHHHHHHhHhhcccCCCCcEEeecCc
Q 006050 369 SESQTKQWLTWCEEEKLKLRSQPAVVPLSV 398 (663)
Q Consensus 369 Ses~~k~w~~~~~~~~i~l~s~~~VVp~gV 398 (663)
|....+++.+.. + +.+..+||.|-
T Consensus 161 s~~I~~y~~~~y---~---~~~s~~IaYGa 184 (185)
T PF09314_consen 161 SKGIQDYIKERY---G---RKKSTFIAYGA 184 (185)
T ss_pred CHHHHHHHHHHc---C---CCCcEEecCCC
Confidence 999999976543 2 24578888874
No 121
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=94.98 E-value=3.7 Score=45.74 Aligned_cols=50 Identities=18% Similarity=0.202 Sum_probs=39.4
Q ss_pred HhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 600 QHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 600 ~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
+.++-.++|+++.+.. +...|+..|-+.+-.|-| ..=||-.+|+||+.-.
T Consensus 256 ~~L~~~~~v~li~pl~~~~f~~L~~~a~~iltDSGg-------iqEEAp~lg~Pvl~lR 307 (383)
T COG0381 256 KRLKNVERVKLIDPLGYLDFHNLMKNAFLILTDSGG-------IQEEAPSLGKPVLVLR 307 (383)
T ss_pred HHhCCCCcEEEeCCcchHHHHHHHHhceEEEecCCc-------hhhhHHhcCCcEEeec
Confidence 3344456798888877 899999999888888853 4459999999999754
No 122
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=94.69 E-value=0.19 Score=54.86 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=37.3
Q ss_pred cEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 607 AMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 607 ~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
.+.+..+..++..+|++||++|..| |-++.|+|++|+|+|...
T Consensus 280 ~~~v~~~~~~~~~~l~~ADlvI~rS-------Gt~T~E~a~lg~P~Ilip 322 (396)
T TIGR03492 280 TLEVLLGRGAFAEILHWADLGIAMA-------GTATEQAVGLGKPVIQLP 322 (396)
T ss_pred ceEEEechHhHHHHHHhCCEEEECc-------CHHHHHHHHhCCCEEEEe
Confidence 3667777889999999999999998 357799999999999875
No 123
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=94.31 E-value=9.2 Score=41.20 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=40.2
Q ss_pred HHHhCCCCCcE-EEcCCcc-hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 598 LSQHSNLSKAM-LWTPATT-RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 598 l~~~~gLs~~V-~~~G~~~-dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
|.+...-...+ .|-+.-. -+..+|+.||.++++.- .-.+ +-||.+.|+||......+
T Consensus 201 L~~~~~~~~~~~~~~~~~~nPy~~~La~ad~i~VT~D----SvSM-vsEA~~tG~pV~v~~l~~ 259 (311)
T PF06258_consen 201 LRELLKDNPGVYIWDGTGENPYLGFLAAADAIVVTED----SVSM-VSEAAATGKPVYVLPLPG 259 (311)
T ss_pred HHHhhcCCCceEEecCCCCCcHHHHHHhCCEEEEcCc----cHHH-HHHHHHcCCCEEEecCCC
Confidence 33333233455 6644333 58899999999999864 4454 489999999999887664
No 124
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=93.95 E-value=0.089 Score=49.56 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=35.8
Q ss_pred CcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 606 ~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
.+|.+.++.+++.++|+.||+.|.-+= +.++.||+++|+|.|.-.
T Consensus 55 ~~v~~~~~~~~m~~~m~~aDlvIs~aG------~~Ti~E~l~~g~P~I~ip 99 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAADLVISHAG------AGTIAEALALGKPAIVIP 99 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHSEEEECS-------CHHHHHHHHCT--EEEE-
T ss_pred CcEEEEechhhHHHHHHHcCEEEeCCC------ccHHHHHHHcCCCeeccC
Confidence 689999999999999999998777552 357899999999988643
No 125
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=92.95 E-value=0.88 Score=48.52 Aligned_cols=46 Identities=22% Similarity=0.342 Sum_probs=38.1
Q ss_pred CCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 604 Ls~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
++++|.+.+..+. ..+|.+||++|..+ |. .++.|||++|+|+|+..
T Consensus 273 ~~~~v~~~~~~p~-~~ll~~~~~~I~hg-----G~-~t~~Eal~~G~P~v~~p 318 (392)
T TIGR01426 273 LPPNVEVRQWVPQ-LEILKKADAFITHG-----GM-NSTMEALFNGVPMVAVP 318 (392)
T ss_pred CCCCeEEeCCCCH-HHHHhhCCEEEECC-----Cc-hHHHHHHHhCCCEEecC
Confidence 5678999988876 48999999999877 23 37899999999999864
No 126
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=92.92 E-value=4.5 Score=43.86 Aligned_cols=62 Identities=27% Similarity=0.374 Sum_probs=45.0
Q ss_pred eEEEEeecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCE
Q 006050 574 LKILIGSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPM 652 (663)
Q Consensus 574 lklliG~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPV 652 (663)
+.+++|+..+ ..+. ++..+.. .+++.+.-.++|++.++..||+.+... |..+-||...|+|.
T Consensus 188 l~iV~gs~~p------~l~~-l~k~~~~---~~~i~~~~~~~dma~LMke~d~aI~Aa-------GstlyEa~~lgvP~ 249 (318)
T COG3980 188 LHIVVGSSNP------TLKN-LRKRAEK---YPNINLYIDTNDMAELMKEADLAISAA-------GSTLYEALLLGVPS 249 (318)
T ss_pred EEEEecCCCc------chhH-HHHHHhh---CCCeeeEecchhHHHHHHhcchheecc-------chHHHHHHHhcCCc
Confidence 3477775222 2344 4444443 367888888999999999999887665 56899999999993
No 127
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=91.44 E-value=2.8 Score=42.95 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=35.5
Q ss_pred CcEEEcCCcchHHHHHHHcc-EEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 606 KAMLWTPATTRVASLYSAAD-VYVINSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 606 ~~V~~~G~~~dv~~lysaAD-V~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
..+.+.....++.+++..|| |+.++|. |-+|||.+|+||++.-.
T Consensus 182 ~~~~~~~~~~~~~~Ll~~s~~VvtinSt--------vGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 182 PNVVIIDDDVNLYELLEQSDAVVTINST--------VGLEALLHGKPVIVFGR 226 (269)
T ss_pred CCeEEECCCCCHHHHHHhCCEEEEECCH--------HHHHHHHcCCceEEecC
Confidence 45566666678999999999 5667776 88999999999998654
No 128
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=91.01 E-value=0.38 Score=50.33 Aligned_cols=49 Identities=18% Similarity=0.317 Sum_probs=41.1
Q ss_pred CCCcEEEcCCcc-hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 604 LSKAMLWTPATT-RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 604 Ls~~V~~~G~~~-dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
+++++.+.+..+ ++..+|++||++|..+- ++ ++.||+++|+|+|.....
T Consensus 227 ~~~~v~~~~~~~~~~~~~l~~ad~vI~~~G-----~~-t~~Ea~~~g~P~l~ip~~ 276 (321)
T TIGR00661 227 YNENVEIRRITTDNFKELIKNAELVITHGG-----FS-LISEALSLGKPLIVIPDL 276 (321)
T ss_pred cCCCEEEEECChHHHHHHHHhCCEEEECCC-----hH-HHHHHHHcCCCEEEEcCC
Confidence 357888888885 89999999999999983 32 589999999999997764
No 129
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=89.42 E-value=22 Score=37.88 Aligned_cols=48 Identities=13% Similarity=0.360 Sum_probs=32.5
Q ss_pred CCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 602 SNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 602 ~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
....++|.+.....++.+++..||+++.= ++-++.|++.++.|||-..
T Consensus 248 ~~~~~~i~~~~~~~~~~~ll~~aDiLITD-------ySSi~fD~~~l~KPiify~ 295 (369)
T PF04464_consen 248 KEDNSNIIFVSDNEDIYDLLAAADILITD-------YSSIIFDFLLLNKPIIFYQ 295 (369)
T ss_dssp TT-TTTEEE-TT-S-HHHHHHT-SEEEES-------S-THHHHHGGGT--EEEE-
T ss_pred hccCCcEEECCCCCCHHHHHHhcCEEEEe-------chhHHHHHHHhCCCEEEEe
Confidence 34567899988888999999999998853 3448999999999999653
No 130
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=78.37 E-value=28 Score=36.56 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=31.0
Q ss_pred EEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEE
Q 006050 608 MLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLE 654 (663)
Q Consensus 608 V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVa 654 (663)
+.+.|.++ +++.+++.||++|-+-- | ..==|-|.|+|+|+
T Consensus 234 ~~l~g~~sL~el~ali~~a~l~I~~DS------G-p~HlAaA~~~P~i~ 275 (334)
T TIGR02195 234 RNLAGETSLDEAVDLIALAKAVVTNDS------G-LMHVAAALNRPLVA 275 (334)
T ss_pred ccCCCCCCHHHHHHHHHhCCEEEeeCC------H-HHHHHHHcCCCEEE
Confidence 44778765 99999999999999875 2 22236689999997
No 131
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=78.24 E-value=17 Score=37.16 Aligned_cols=54 Identities=24% Similarity=0.337 Sum_probs=37.2
Q ss_pred HHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 595 LEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.+.+.+..+-...+.+.|.++ ++..+++.||++|-+-- |.+-+ |.|+|+|+|+-
T Consensus 168 ~~~i~~~~~~~~~~~~~~~~~l~e~~~li~~~~l~I~~Ds------g~~Hl-A~a~~~p~i~l 223 (279)
T cd03789 168 AEEIAAALGGPRVVNLAGKTSLRELAALLARADLVVTNDS------GPMHL-AAALGTPTVAL 223 (279)
T ss_pred HHHHHHhcCCCccccCcCCCCHHHHHHHHHhCCEEEeeCC------HHHHH-HHHcCCCEEEE
Confidence 444444443234456777764 89999999999998863 44444 45999999874
No 132
>PRK14986 glycogen phosphorylase; Provisional
Probab=77.47 E-value=20 Score=43.75 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=46.9
Q ss_pred CCCC--cEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 603 NLSK--AMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 603 gLs~--~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
.+.+ +|.|++.-. -...++++|||....|.--.|.-|-.=+=||.-|.+-++|--|.
T Consensus 617 ~v~~~lkVVFlenY~vslAe~lipg~Dv~eqis~ag~EASGTsnMK~alNGaLtlgtlDG~ 677 (815)
T PRK14986 617 QIGDKLKVVFIPNYSVSLAQLIIPAADLSEQISLAGTEASGTSNMKFALNGALTIGTLDGA 677 (815)
T ss_pred hhcCceeEEEeCCCCHHHHHHhhhhhhhhhhCCCCCccccCcchhhHHhcCceeeeccCCc
Confidence 4445 788888654 45578999999999998668999999999999999999887664
No 133
>PF00343 Phosphorylase: Carbohydrate phosphorylase; InterPro: IPR000811 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 35 GT35 from CAZY comprises enzymes with only one known activity; glycogen and starch phosphorylase (2.4.1.1 from EC). The main role of glycogen phosphorylase (GPase) is to provide phosphorylated glucose molecules (G-1-P) []. GPase is a highly regulated allosteric enzyme. The net effect of the regulatory site allows the enzyme to operate at a variety of rates; the enzyme is not simply regulated as "on" or "off", but rather it can be thought of being set to operate at an ideal rate based on changing conditions at in the cell. The most important allosteric effector is the phosphate molecule covalently attached to Ser14. This switches GPase from the b (inactive) state to the a (active) state. Upon phosphorylation, GPase attains about 80% of its Vmax. When the enzyme is not phosphorylated, GPase activity is practically non-existent at low AMP levels. There is some apparent controversy as to the structure of GPase. All sources agree that the enzyme is multimeric, but there is apparent controversy as to the enzyme being a tetramer or a dimer. Apparently, GPase (in the a form) forms tetramers in the crystal form. The consensus seems to be that `regardless of the a or b form, GPase functions as a dimer in vivo []. The GPase monomer is best described as consisting of two domains, an N-terminal domain and a C-terminal domain []. The C-terminal domain is often referred to as the catalytic domain. It consists of a beta-sheet core surrounded by layers of helical segments []. The vitamin cofactor pyridoxal phosphate (PLP) is covalently attached to the amino acid backbone. The N-terminal domain also consists of a central beta-sheet core and is surrounded by layers of helical segments. The N-terminal domain contains different allosteric effector sites to regulate the enzyme. Bacterial phosphorylases follow the same catalytic mechanisms as their plant and animal counterparts, but differ considerably in terms of their substrate specificity and regulation. The catalytic domains are highly conserved while the regulatory sites are only poorly conserved. For maltodextrin phosphorylase from Escherichia coli the physiological role of the enzyme in the utilisation of maltidextrins is known in detail; that of all the other bacterial phosphorylases is still unclear. Roles in regulatuon of endogenous glycogen metabolism in periods of starvation, and sporulation, stress response or quick adaptation to changing environments are possible [].; GO: 0004645 phosphorylase activity, 0005975 carbohydrate metabolic process; PDB: 1YGP_B 2AW3_B 2AV6_B 1AHP_B 1QM5_A 1L5W_A 2ECP_A 2ASV_A 1L5V_B 1E4O_B ....
Probab=75.86 E-value=79 Score=38.29 Aligned_cols=57 Identities=14% Similarity=0.144 Sum_probs=40.9
Q ss_pred CCCC--cEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 603 NLSK--AMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 603 gLs~--~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
.+.+ +|.|++.-+ -...+++++||....|+--.|.-|-.-+=||.-|.+-+++--|.
T Consensus 518 ~v~~~lkVvFlenYdvslA~~lipg~DVwln~p~~p~EASGTSgMK~~~NGaL~lstlDG~ 578 (713)
T PF00343_consen 518 EVGDRLKVVFLENYDVSLAEKLIPGVDVWLNIPTRPKEASGTSGMKAAMNGALNLSTLDGW 578 (713)
T ss_dssp TTCCGEEEEEETT-SHHHHHHHGGG-SEEEE---TTSSSS-SHHHHHHHTT-EEEEESSTC
T ss_pred hhccceeEEeecCCcHHHHHHHhhhhhhhhhCCCCCccccCCCcchhhcCCCeEEecccch
Confidence 4555 688888755 45578899999999998668999999999999999999986553
No 134
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=75.15 E-value=27 Score=37.22 Aligned_cols=53 Identities=15% Similarity=0.158 Sum_probs=36.8
Q ss_pred HHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 596 EFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 596 ~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
+++++...-+..+.+.|.++ +.+.+++.||+||-+-- | ..==|-|+|+|+|+-
T Consensus 233 ~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~v~nDS------G-p~HlAaA~g~P~v~l 287 (352)
T PRK10422 233 NEIAQGCQTPPVTALAGKTTFPELGALIDHAQLFIGVDS------A-PAHIAAAVNTPLICL 287 (352)
T ss_pred HHHHHhcCCCccccccCCCCHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEE
Confidence 34444333333466788776 99999999999999875 2 222355899999973
No 135
>cd04300 GT1_Glycogen_Phosphorylase This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=73.77 E-value=25 Score=42.88 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=46.2
Q ss_pred CCC--cEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 604 LSK--AMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 604 Ls~--~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
+.+ +|.|++.-. -...++++|||....|.--.|.-|-.=+=||.-|.+-++|--|.
T Consensus 605 v~~~lkVVFlenY~VslAe~iipaaDvseqis~ag~EASGTsnMK~~lNGaltlgtlDGa 664 (797)
T cd04300 605 VGDKLKVVFLPNYNVSLAEKIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGA 664 (797)
T ss_pred cCCceEEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCCchhhHHhcCceeeecccch
Confidence 445 688888654 55678999999999998668999999999999999999996553
No 136
>TIGR02093 P_ylase glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources.
Probab=73.74 E-value=16 Score=44.39 Aligned_cols=56 Identities=16% Similarity=0.138 Sum_probs=46.2
Q ss_pred CCC--cEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 604 LSK--AMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 604 Ls~--~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
+.+ +|.|++.-. -...++++|||....|.--.|.-|-.=+=||.-|.+-++|--|.
T Consensus 602 v~~~lkVVFlenY~VslAe~iipaaDvseqistag~EASGTsnMK~alNGaltlgtlDGa 661 (794)
T TIGR02093 602 VGDKLKVVFVPNYNVSLAELIIPAADLSEQISTAGKEASGTGNMKFMLNGALTIGTLDGA 661 (794)
T ss_pred hCCceeEEEeCCCChHHHHHhhhhhhhhhhCCCCCccccCcchhHHHhcCcceeecccch
Confidence 445 688888654 56678999999999998668999999999999999999985543
No 137
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=73.61 E-value=5.5 Score=35.91 Aligned_cols=45 Identities=16% Similarity=0.220 Sum_probs=33.4
Q ss_pred CHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCC
Q 006050 256 GAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE 303 (663)
Q Consensus 256 GAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~ 303 (663)
|--.=++.||++|.++||+|.+++ ...+.+.+...|+...+....
T Consensus 10 Ghv~P~lala~~L~~rGh~V~~~~---~~~~~~~v~~~Gl~~~~~~~~ 54 (139)
T PF03033_consen 10 GHVYPFLALARALRRRGHEVRLAT---PPDFRERVEAAGLEFVPIPGD 54 (139)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEE---TGGGHHHHHHTT-EEEESSSC
T ss_pred hHHHHHHHHHHHHhccCCeEEEee---cccceecccccCceEEEecCC
Confidence 333457899999999999998665 356788888999999876554
No 138
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=73.20 E-value=20 Score=39.75 Aligned_cols=49 Identities=16% Similarity=0.170 Sum_probs=38.3
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCe
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKI 295 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gI 295 (663)
+|||+++..-. .|--.-.+.|+++|.+.||+|+..+ .+.+.+.+...|+
T Consensus 1 ~mkil~~~~~~--~Ghv~p~~aL~~eL~~~gheV~~~~---~~~~~~~ve~ag~ 49 (406)
T COG1819 1 RMKILFVVCGA--YGHVNPCLALGKELRRRGHEVVFAS---TGKFKEFVEAAGL 49 (406)
T ss_pred CceEEEEeccc--cccccchHHHHHHHHhcCCeEEEEe---CHHHHHHHHHhCc
Confidence 47888887665 6766678999999999999998876 3456677777783
No 139
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=68.58 E-value=2.1e+02 Score=32.24 Aligned_cols=69 Identities=10% Similarity=0.149 Sum_probs=52.5
Q ss_pred ChhHHHHHHHHHHHhCCCCCcEEEc-CCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 587 KVPYVKEILEFLSQHSNLSKAMLWT-PATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 587 ~~~y~k~~L~~l~~~~gLs~~V~~~-G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
+.+|.++ +.+.++++--.+++..+ .+.+ +-.++++.||+.+++.. ..+++|+. +=.+.+|+||+-+...
T Consensus 227 n~~Yi~~-V~~~~~~lF~~~~~~iL~e~mpf~eYl~lL~~cDl~if~~~-RQQgiGnI-~lLl~~G~~v~L~~~n 298 (360)
T PF07429_consen 227 NQAYIQQ-VIQAGKELFGAENFQILTEFMPFDEYLALLSRCDLGIFNHN-RQQGIGNI-CLLLQLGKKVFLSRDN 298 (360)
T ss_pred hHHHHHH-HHHHHHHhcCccceeEhhhhCCHHHHHHHHHhCCEEEEeec-hhhhHhHH-HHHHHcCCeEEEecCC
Confidence 4578776 77777776455677654 4544 88999999999999984 48999965 7799999999987653
No 140
>PRK14985 maltodextrin phosphorylase; Provisional
Probab=64.15 E-value=22 Score=43.21 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=44.5
Q ss_pred cEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 607 AMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 607 ~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
+|.|++.-. -...++++|||....|.--.|.-|-.=+=||.-|.+-++|--|.
T Consensus 609 kVVFlenY~VslAe~lipaaDvseqis~ag~EASGTsnMK~amNGaLtlgtlDGa 663 (798)
T PRK14985 609 KVVFLPDYCVSAAELLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDGA 663 (798)
T ss_pred eEEEeCCCChHHHHHHhhhhhhhhhCCCCCccccCcchhHHHhcCceeeecccch
Confidence 688888654 55678999999999998668999999999999999999886553
No 141
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=63.75 E-value=4.4 Score=44.22 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=28.9
Q ss_pred hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEE
Q 006050 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLE 654 (663)
Q Consensus 616 dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVa 654 (663)
+..++|++||+.+..| |-+++|++++|+|.|.
T Consensus 228 ~~~~~m~~aDlal~~S-------GT~TLE~al~g~P~Vv 259 (347)
T PRK14089 228 DTHKALLEAEFAFICS-------GTATLEAALIGTPFVL 259 (347)
T ss_pred cHHHHHHhhhHHHhcC-------cHHHHHHHHhCCCEEE
Confidence 6678999999999999 5799999999999876
No 142
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=63.18 E-value=48 Score=36.54 Aligned_cols=79 Identities=14% Similarity=0.184 Sum_probs=56.1
Q ss_pred ceEEEE--eecCCCCCChhHHHHHHHHHHHhCCCCCcEEEcC-Ccc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHH
Q 006050 573 ALKILI--GSVGSKSNKVPYVKEILEFLSQHSNLSKAMLWTP-ATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMA 647 (663)
Q Consensus 573 dlklli--G~~g~~~n~~~y~k~~L~~l~~~~gLs~~V~~~G-~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA 647 (663)
++.|++ |+. .++..|.++ +++.++++--++++..+- ..+ +-..+++.||+.++.-. ..+++|+. +=.+.
T Consensus 175 ~v~ii~PlsYp---~gn~~Yi~~-V~~~~~~lF~~~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~-RQQgiGnl-~lLi~ 248 (322)
T PRK02797 175 NVKIIVPMGYP---ANNQAYIEE-VRQAGLALFGAENFQILTEKLPFDDYLALLRQCDLGYFIFA-RQQGIGTL-CLLIQ 248 (322)
T ss_pred CeEEEEECCcC---CCCHHHHHH-HHHHHHHhcCcccEEehhhhCCHHHHHHHHHhCCEEEEeec-hhhHHhHH-HHHHH
Confidence 566665 552 124678777 666777665446665544 333 89999999999998873 47999965 67899
Q ss_pred cCCCEEEeCC
Q 006050 648 FGVPMLEAQK 657 (663)
Q Consensus 648 ~GlPVVatd~ 657 (663)
+|+||+-+..
T Consensus 249 ~G~~v~l~r~ 258 (322)
T PRK02797 249 LGKPVVLSRD 258 (322)
T ss_pred CCCcEEEecC
Confidence 9999987743
No 143
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=62.59 E-value=15 Score=39.83 Aligned_cols=53 Identities=21% Similarity=0.172 Sum_probs=36.7
Q ss_pred HHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHH-HHHHcCCCEEEe
Q 006050 592 KEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTI-EAMAFGVPMLEA 655 (663)
Q Consensus 592 k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~Vii-EAMA~GlPVVat 655 (663)
...+.+..+++ ++|.+..... +...+++.|+++|-.|- -++ ||.++|+|||.-
T Consensus 228 ~~~i~~~l~~~---~~v~~~~~l~~~~~l~ll~~a~~vvgdSs--------GI~eEa~~lg~P~v~i 283 (346)
T PF02350_consen 228 SDIIIEKLKKY---DNVRLIEPLGYEEYLSLLKNADLVVGDSS--------GIQEEAPSLGKPVVNI 283 (346)
T ss_dssp HHHHHHHHTT----TTEEEE----HHHHHHHHHHESEEEESSH--------HHHHHGGGGT--EEEC
T ss_pred HHHHHHHhccc---CCEEEECCCCHHHHHHHHhcceEEEEcCc--------cHHHHHHHhCCeEEEe
Confidence 44455555554 3899998876 89999999999999992 456 999999999975
No 144
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=60.59 E-value=2.6e+02 Score=30.72 Aligned_cols=56 Identities=20% Similarity=0.331 Sum_probs=40.1
Q ss_pred HhCCCCCcEEEcCCcc---hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCc
Q 006050 600 QHSNLSKAMLWTPATT---RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLL 660 (663)
Q Consensus 600 ~~~gLs~~V~~~G~~~---dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l 660 (663)
.+++-+.-+.|-+.-+ -..+++++||.++.+-- .-. -.-||.|.|.||.+.--...
T Consensus 218 ~~l~s~~~i~w~~~d~g~NPY~~~La~Adyii~TaD----Sin-M~sEAasTgkPv~~~~~~~~ 276 (329)
T COG3660 218 NNLNSSPGIVWNNEDTGYNPYIDMLAAADYIISTAD----SIN-MCSEAASTGKPVFILEPPNF 276 (329)
T ss_pred hccccCceeEeCCCCCCCCchHHHHhhcceEEEecc----hhh-hhHHHhccCCCeEEEecCCc
Confidence 4455556677877643 57799999999998864 222 34799999999988765443
No 145
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=60.33 E-value=27 Score=38.29 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=43.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCC---hhHHhcCCeEEEeCCCCchhhhhcCccEEEE
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGL---MPELARRKIKVLEDRGEPSFKTSMKADLVIA 317 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL---~~eL~~~gIkVl~~~~~~sfk~~~k~DLVia 317 (663)
..++++++ |++. .-+.+|..|++.|++|+++.......+ ..++...|++++...... .....+|+|+.
T Consensus 4 ~~k~v~ii------G~g~-~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~d~vv~ 74 (450)
T PRK14106 4 KGKKVLVV------GAGV-SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPE--EFLEGVDLVVV 74 (450)
T ss_pred CCCEEEEE------CCCH-HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcch--hHhhcCCEEEE
Confidence 34666655 5555 556999999999999987643221222 244555688876433222 12346899988
Q ss_pred Cch
Q 006050 318 GSA 320 (663)
Q Consensus 318 nSa 320 (663)
++.
T Consensus 75 ~~g 77 (450)
T PRK14106 75 SPG 77 (450)
T ss_pred CCC
Confidence 654
No 146
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=59.76 E-value=1e+02 Score=32.72 Aligned_cols=40 Identities=23% Similarity=0.259 Sum_probs=31.1
Q ss_pred EEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEE
Q 006050 608 MLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLE 654 (663)
Q Consensus 608 V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVa 654 (663)
+.+.|.++ +++.+++.||+||-+-- | .+==|-|.|+|+|+
T Consensus 244 ~~l~g~~sL~el~ali~~a~l~I~nDT------G-p~HlAaA~g~P~va 285 (348)
T PRK10916 244 RNLAGETQLEQAVILIAACKAIVTNDS------G-LMHVAAALNRPLVA 285 (348)
T ss_pred eeccCCCCHHHHHHHHHhCCEEEecCC------h-HHHHHHHhCCCEEE
Confidence 55677765 99999999999999875 2 22336689999996
No 147
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=59.22 E-value=31 Score=38.43 Aligned_cols=79 Identities=19% Similarity=0.269 Sum_probs=48.4
Q ss_pred cccccccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCC---ChhHHhcCCeEEEeCCCCchhhhhc
Q 006050 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG---LMPELARRKIKVLEDRGEPSFKTSM 310 (663)
Q Consensus 234 ~~~~~~~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~Gg---L~~eL~~~gIkVl~~~~~~sfk~~~ 310 (663)
.+|..+...+||+++ |.-.+-+.+|+.|.+.|++|.+.-...... ...++...|+.+....... ....
T Consensus 6 ~~~~~~~~~~~i~v~-------G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~--~~~~ 76 (458)
T PRK01710 6 NEFKKFIKNKKVAVV-------GIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYL--DKLD 76 (458)
T ss_pred HHHhhhhcCCeEEEE-------cccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCCh--HHhc
Confidence 356666677888766 222244588899999999987643221111 1235777898887543221 1125
Q ss_pred CccEEEECchh
Q 006050 311 KADLVIAGSAV 321 (663)
Q Consensus 311 k~DLVianSav 321 (663)
++|+|+..+.+
T Consensus 77 ~~dlVV~Spgi 87 (458)
T PRK01710 77 GFDVIFKTPSM 87 (458)
T ss_pred cCCEEEECCCC
Confidence 68999887654
No 148
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=57.41 E-value=18 Score=37.21 Aligned_cols=38 Identities=18% Similarity=0.224 Sum_probs=28.9
Q ss_pred eEEEEeCCCCC----CCHHHHHHHHHHHHHHCCCeEEEEEEc
Q 006050 244 KFILIFHELSM----TGAPLSMMELATELLSCGATVSAVVLS 281 (663)
Q Consensus 244 KILLI~heLs~----gGAp~smmeLA~~L~s~G~~V~vVvLs 281 (663)
|||+|+.|... ||-.-.+-.|+++|+++|++|.+++..
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~ 42 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPK 42 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEcc
Confidence 68999888753 677778889999999999999988754
No 149
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=57.27 E-value=1.3e+02 Score=31.72 Aligned_cols=53 Identities=17% Similarity=0.197 Sum_probs=36.4
Q ss_pred HHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 596 EFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 596 ~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
+++.+..+-+.-+.++|.++ +++.+++.||++|-+-- | ..==|-|+|+|+|+=
T Consensus 231 ~~i~~~~~~~~~~~l~g~~sL~el~ali~~a~l~Vs~DS------G-p~HlAaA~g~p~v~L 285 (344)
T TIGR02201 231 NEIAQGCQTPRVTSLAGKLTLPQLAALIDHARLFIGVDS------V-PMHMAAALGTPLVAL 285 (344)
T ss_pred HHHHhhCCCCcccccCCCCCHHHHHHHHHhCCEEEecCC------H-HHHHHHHcCCCEEEE
Confidence 34444333223355788776 99999999999999875 2 223366899999973
No 150
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=56.93 E-value=42 Score=33.84 Aligned_cols=69 Identities=23% Similarity=0.270 Sum_probs=39.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcC-CeEEEeCCCCchhhhhcCccEEEECc
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~-gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
..+++|+| ||++. ....++.|.++|++|.++.......+ .++... .+.+...... -.....+|+|++-+
T Consensus 9 ~~k~vLVI------GgG~v-a~~ka~~Ll~~ga~V~VIs~~~~~~l-~~l~~~~~i~~~~~~~~--~~~l~~adlViaaT 78 (202)
T PRK06718 9 SNKRVVIV------GGGKV-AGRRAITLLKYGAHIVVISPELTENL-VKLVEEGKIRWKQKEFE--PSDIVDAFLVIAAT 78 (202)
T ss_pred CCCEEEEE------CCCHH-HHHHHHHHHHCCCeEEEEcCCCCHHH-HHHHhCCCEEEEecCCC--hhhcCCceEEEEcC
Confidence 46788887 55544 36678899999999987742111112 233333 3555432211 11235789998764
No 151
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=53.51 E-value=48 Score=33.54 Aligned_cols=70 Identities=23% Similarity=0.194 Sum_probs=42.2
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcC-CeEEEeCCCCchhhhhcCccEEEECc
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~-gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
.++++|+| ||++ +...-++.|.++|+.|+++... ...-..++... +|.++..... ......+|+|++.+
T Consensus 8 ~gk~vlVv------GgG~-va~rk~~~Ll~~ga~VtVvsp~-~~~~l~~l~~~~~i~~~~~~~~--~~dl~~~~lVi~at 77 (205)
T TIGR01470 8 EGRAVLVV------GGGD-VALRKARLLLKAGAQLRVIAEE-LESELTLLAEQGGITWLARCFD--ADILEGAFLVIAAT 77 (205)
T ss_pred CCCeEEEE------CcCH-HHHHHHHHHHHCCCEEEEEcCC-CCHHHHHHHHcCCEEEEeCCCC--HHHhCCcEEEEECC
Confidence 46788887 5554 4466678999999999877532 22222334443 5666553322 12345789998765
Q ss_pred h
Q 006050 320 A 320 (663)
Q Consensus 320 a 320 (663)
.
T Consensus 78 ~ 78 (205)
T TIGR01470 78 D 78 (205)
T ss_pred C
Confidence 3
No 152
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=52.85 E-value=22 Score=31.47 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=45.3
Q ss_pred HHHHHHHHhCCCCCcEEE---cCCcc---hHHHHHHHccEEEEcCCCC-CCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 593 EILEFLSQHSNLSKAMLW---TPATT---RVASLYSAADVYVINSQGL-GETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 593 ~~L~~l~~~~gLs~~V~~---~G~~~---dv~~lysaADV~V~pS~~~-~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
..++.+++++|..- +++ -|..+ .++..+..||+.|++.... -...-.+--+|-..|+|++-+...+++
T Consensus 13 ~~~~~~~~~~G~~~-~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~~~~~~~ 87 (97)
T PF10087_consen 13 RRYKRILEKYGGKL-IHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYSRSRGVS 87 (97)
T ss_pred HHHHHHHHHcCCEE-EEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEECCCCHH
Confidence 33677778888853 333 22222 3888999999888876511 234455666777889999999876654
No 153
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=51.20 E-value=95 Score=30.87 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=31.1
Q ss_pred cEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 607 AMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 607 ~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.+.++|.++ +++.+++.||++|-+-- . .+==|.|+|+|+|+-
T Consensus 165 ~~~~~~~~~l~e~~ali~~a~~~I~~Dt-----g--~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 165 VINLAGKTSLRELAALISRADLVIGNDT-----G--PMHLAAALGTPTVAL 208 (247)
T ss_dssp TEEETTTS-HHHHHHHHHTSSEEEEESS-----H--HHHHHHHTT--EEEE
T ss_pred eEeecCCCCHHHHHHHHhcCCEEEecCC-----h--HHHHHHHHhCCEEEE
Confidence 688888776 89999999999999875 2 223477899999974
No 154
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=51.03 E-value=1.1e+02 Score=32.13 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=33.3
Q ss_pred cEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 607 AMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 607 ~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.+.++|.++ +.+.+++.||++|-+-- | ..==|-|+|+|+|+-
T Consensus 235 ~~~l~g~~sL~elaali~~a~l~I~nDS------G-p~HlA~A~g~p~val 278 (322)
T PRK10964 235 YVEVLPKLSLEQVARVLAGAKAVVSVDT------G-LSHLTAALDRPNITL 278 (322)
T ss_pred cceecCCCCHHHHHHHHHhCCEEEecCC------c-HHHHHHHhCCCEEEE
Confidence 477778776 99999999999999975 1 233467899999973
No 155
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=49.45 E-value=1.2e+02 Score=31.61 Aligned_cols=67 Identities=13% Similarity=0.106 Sum_probs=47.9
Q ss_pred ChhHHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCc-----------HHHHHHHHcCCCEEEe
Q 006050 587 KVPYVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFG-----------RVTIEAMAFGVPMLEA 655 (663)
Q Consensus 587 ~~~y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG-----------~ViiEAMA~GlPVVat 655 (663)
..+|+++ .++.-+.+|+. |..+-...+..+.+..||++.++- +++|- ..+-|+...|+|++++
T Consensus 46 ~~~y~~~-~~~af~~lG~~--v~~l~~~~d~~~~l~~ad~I~v~G---Gnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~ 119 (233)
T PRK05282 46 WDDYTAK-VAEALAPLGIE--VTGIHRVADPVAAIENAEAIFVGG---GNTFQLLKQLYERGLLAPIREAVKNGTPYIGW 119 (233)
T ss_pred HHHHHHH-HHHHHHHCCCE--EEEeccchhhHHHHhcCCEEEECC---ccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEE
Confidence 4567766 55555667775 555554466778899999888876 55543 3467898999999998
Q ss_pred CCCC
Q 006050 656 QKKL 659 (663)
Q Consensus 656 d~~~ 659 (663)
-.|.
T Consensus 120 SAGA 123 (233)
T PRK05282 120 SAGA 123 (233)
T ss_pred CHHH
Confidence 8765
No 156
>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses []. Mutations in two homologous genes, EXT1 and EXT2, are responsible for the EXT syndrome. The human and mouse EXT genes have at least two homologs in the invertebrate Caenorhabditis elegans, indicating that they do not function exclusively as regulators of bone growth. EXT1 and EXT2 have both been shown to encode glycosyltransferases involved in the chain elongation step of heparan sulphate biosynthesis [].; GO: 0016020 membrane
Probab=48.27 E-value=64 Score=32.97 Aligned_cols=42 Identities=17% Similarity=0.265 Sum_probs=33.3
Q ss_pred hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCC-CEEEeCCCC
Q 006050 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGV-PMLEAQKKL 659 (663)
Q Consensus 616 dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~Gl-PVVatd~~~ 659 (663)
+....|+.+...++|.- .-.+..-+.|||++|+ |||.++.-.
T Consensus 229 ~~~~~l~~S~FCL~p~G--~~~~s~Rl~eal~~GcIPVii~d~~~ 271 (302)
T PF03016_consen 229 EYMELLRNSKFCLCPRG--DGPWSRRLYEALAAGCIPVIISDDYV 271 (302)
T ss_pred HHHHhcccCeEEEECCC--CCcccchHHHHhhhceeeEEecCccc
Confidence 68899999998888773 3348889999999985 999877443
No 157
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=48.24 E-value=70 Score=33.33 Aligned_cols=78 Identities=10% Similarity=0.095 Sum_probs=45.0
Q ss_pred ccccccccC--CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhc
Q 006050 233 KGDFARFVW--SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSM 310 (663)
Q Consensus 233 k~~~~~~~~--~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~ 310 (663)
+.-|.=++. .+++|+| ||++.. ..=+..|++.|++|++|...-...+........|+++....... ...
T Consensus 14 ~~~~pi~l~~~~~~VLVV------GGG~VA-~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~--dl~ 84 (223)
T PRK05562 14 NKYMFISLLSNKIKVLII------GGGKAA-FIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKE--FIK 84 (223)
T ss_pred CCEeeeEEECCCCEEEEE------CCCHHH-HHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChH--HhC
Confidence 444444444 4566666 666655 44457888899999988643222232222334677775433322 235
Q ss_pred CccEEEECc
Q 006050 311 KADLVIAGS 319 (663)
Q Consensus 311 k~DLVianS 319 (663)
.+++|++-+
T Consensus 85 g~~LViaAT 93 (223)
T PRK05562 85 DKHLIVIAT 93 (223)
T ss_pred CCcEEEECC
Confidence 789998765
No 158
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=48.21 E-value=62 Score=31.41 Aligned_cols=66 Identities=20% Similarity=0.205 Sum_probs=38.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcC-CeEEEeCCCCchhhhhcCccEEEECc
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~-gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
.+++||+| ||++ .-...++.|.+.|++|.++. . .+.+++... .+.+....... .....+|+|++-+
T Consensus 12 ~~~~vlVv------GGG~-va~rka~~Ll~~ga~V~VIs--p--~~~~~l~~l~~i~~~~~~~~~--~dl~~a~lViaaT 78 (157)
T PRK06719 12 HNKVVVII------GGGK-IAYRKASGLKDTGAFVTVVS--P--EICKEMKELPYITWKQKTFSN--DDIKDAHLIYAAT 78 (157)
T ss_pred CCCEEEEE------CCCH-HHHHHHHHHHhCCCEEEEEc--C--ccCHHHHhccCcEEEecccCh--hcCCCceEEEECC
Confidence 46788887 5544 44778899999999998773 2 234444432 33333211111 1235688888754
No 159
>COG1647 Esterase/lipase [General function prediction only]
Probab=47.39 E-value=34 Score=36.23 Aligned_cols=51 Identities=25% Similarity=0.354 Sum_probs=38.8
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCC
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRK 294 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~g 294 (663)
+.+-+|++|. .||.|.-+-.|+++|.++|++|++=.+..-|-+.+++..-+
T Consensus 14 G~~AVLllHG--FTGt~~Dvr~Lgr~L~e~GyTv~aP~ypGHG~~~e~fl~t~ 64 (243)
T COG1647 14 GNRAVLLLHG--FTGTPRDVRMLGRYLNENGYTVYAPRYPGHGTLPEDFLKTT 64 (243)
T ss_pred CCEEEEEEec--cCCCcHHHHHHHHHHHHCCceEecCCCCCCCCCHHHHhcCC
Confidence 4677888887 58999999999999999999999865544444554554444
No 160
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=45.77 E-value=31 Score=34.25 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=29.0
Q ss_pred HHHHHHH-ccEEEEcCCCCCC----CCcHHHHHHHHcCCCEEEe
Q 006050 617 VASLYSA-ADVYVINSQGLGE----TFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 617 v~~lysa-ADV~V~pS~~~~E----~FG~ViiEAMA~GlPVVat 655 (663)
+...+.. +|++|+|-.|..| +|--.+.|||+.|+|||.+
T Consensus 86 l~~al~~~~DLlivNkFGk~Ea~G~Glr~~i~~A~~~giPVLt~ 129 (159)
T PF10649_consen 86 LRRALAEGADLLIVNKFGKQEAEGRGLRDEIAAALAAGIPVLTA 129 (159)
T ss_pred HHHHHhcCCCEEEEcccHHhhhcCCCHHHHHHHHHHCCCCEEEE
Confidence 3444444 9999999764444 5556788999999999986
No 161
>TIGR03264 met_CoM_red_C methyl-coenzyme M reductase I operon protein C. has several modified sites, so accessory proteins are expected. Several methanogens have encode two such enzymes, designated I and II; this protein occurs only operons of type I. The precise function is unknown.
Probab=44.80 E-value=38 Score=34.66 Aligned_cols=59 Identities=19% Similarity=0.294 Sum_probs=49.0
Q ss_pred CCccccccccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHH
Q 006050 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL 290 (663)
Q Consensus 231 ~~k~~~~~~~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL 290 (663)
-..|+|++. +..-|+.|..++...=.|.-+-+++.+|++.|..++.++|..+.|..+..
T Consensus 22 AQRGT~ae~-~~~eV~vVamSpgrrHitkpvCdIt~~LRr~Gi~ts~lvLnaG~GvP~da 80 (194)
T TIGR03264 22 AQRGTFAEC-GRNDVVAVAMSPGRRHITKPVCEITYALREAGIQTSVLVLNAGSGIPPDA 80 (194)
T ss_pred ccceehhhc-cCCCEEEEecCcccccCCCcHHHHHHHHHHcCCccceEEEecCCCCCCcc
Confidence 346788875 45679999999998888999999999999999999999999877755443
No 162
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=43.47 E-value=42 Score=28.15 Aligned_cols=42 Identities=29% Similarity=0.275 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEEEcCCCC----------ChhHHhcCCeEEEeC
Q 006050 259 LSMMELATELLSCGATVSAVVLSKRGG----------LMPELARRKIKVLED 300 (663)
Q Consensus 259 ~smmeLA~~L~s~G~~V~vVvLs~~Gg----------L~~eL~~~gIkVl~~ 300 (663)
..-+|+|..|.+.|.+|+++.....-. +.+.+.+.||+++..
T Consensus 9 ~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~~ 60 (80)
T PF00070_consen 9 FIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHTN 60 (80)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEES
T ss_pred HHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEeC
Confidence 356899999999999999876432211 223466788888754
No 163
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures]
Probab=42.59 E-value=1.6e+02 Score=33.64 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=45.4
Q ss_pred HHHHHHHHHHh-CCCCCcEEEcCC------cchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcC-CCEEEeCCC
Q 006050 591 VKEILEFLSQH-SNLSKAMLWTPA------TTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFG-VPMLEAQKK 658 (663)
Q Consensus 591 ~k~~L~~l~~~-~gLs~~V~~~G~------~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~G-lPVVatd~~ 658 (663)
++..|..+... .+....+..... .....+.++.|-..+.|.- .+.-...++||+.+| +|||-++.-
T Consensus 304 iR~~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~m~~S~FCL~p~G--d~~ts~R~fdai~~gCvPViisd~~ 377 (464)
T KOG1021|consen 304 IRSILLDLWKKDPDTEVFVNCPRGKVSCDRPLNYMEGMQDSKFCLCPPG--DTPTSPRLFDAIVSGCVPVIISDGI 377 (464)
T ss_pred HHHHHHHHhhcCcCccccccCCCCccccCCcchHHHHhhcCeEEECCCC--CCcccHhHHHHHHhCCccEEEcCCc
Confidence 55555555554 444444444433 2367888888888888884 677777899999997 599998863
No 164
>COG0058 GlgP Glucan phosphorylase [Carbohydrate transport and metabolism]
Probab=42.27 E-value=2.1e+02 Score=35.00 Aligned_cols=62 Identities=19% Similarity=0.149 Sum_probs=48.7
Q ss_pred HHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCC
Q 006050 598 LSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKL 659 (663)
Q Consensus 598 l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~ 659 (663)
.++..+--.+|.|++.-+ -..-++.+|||-...|.--.|.-|-.=+=||.-|.+-|+|--|.
T Consensus 549 ~a~~in~~lkVvFl~nYdvslA~~iipa~Dvweqis~a~~EASGTsnMK~alNGaltigtlDGa 612 (750)
T COG0058 549 VADVINNKLKVVFLPNYDVSLAELLIPAADVWEQIPTAGKEASGTSNMKAALNGALTLGTLDGA 612 (750)
T ss_pred HHHhhcccceEEEeCCCChhHHHhhcccccccccCCCCCccccCcCcchHHhcCCceeeccccH
Confidence 344444456788887654 45578899999999998667999999999999999999986553
No 165
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=40.83 E-value=82 Score=35.13 Aligned_cols=70 Identities=21% Similarity=0.163 Sum_probs=43.8
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC---CChhHHhcCCeEEEeCCCCchhhhhcCccEEEEC
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG---GLMPELARRKIKVLEDRGEPSFKTSMKADLVIAG 318 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G---gL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVian 318 (663)
++++++| |++. .-+++|..|.+.|++|+++-..... .+.+.+...||++....... ....+|+|+..
T Consensus 16 ~~~v~vi------G~G~-~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~---~~~~~D~Vv~s 85 (480)
T PRK01438 16 GLRVVVA------GLGV-SGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPT---LPEDTDLVVTS 85 (480)
T ss_pred CCEEEEE------CCCH-HHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCcc---ccCCCCEEEEC
Confidence 4677776 4333 4456899999999998765322111 13355778899987533221 23468999876
Q ss_pred chh
Q 006050 319 SAV 321 (663)
Q Consensus 319 Sav 321 (663)
+.+
T Consensus 86 ~Gi 88 (480)
T PRK01438 86 PGW 88 (480)
T ss_pred CCc
Confidence 543
No 166
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=40.19 E-value=70 Score=29.61 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=31.9
Q ss_pred CeEEEEeCCCCCCCHHHHHHH-HHHHHHHCCCeEEEEEEcC
Q 006050 243 RKFILIFHELSMTGAPLSMME-LATELLSCGATVSAVVLSK 282 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smme-LA~~L~s~G~~V~vVvLs~ 282 (663)
|||++|..+....|--..+++ ++..|.+.|++|.++-+..
T Consensus 1 Mkilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 699999999988888887776 6666777899999887654
No 167
>TIGR00460 fmt methionyl-tRNA formyltransferase. The top-scoring characterized proteins other than methionyl-tRNA formyltransferase (fmt) itself are formyltetrahydrofolate dehydrogenases. The mitochondrial methionyl-tRNA formyltransferases are so divergent that, in a multiple alignment of bacterial fmt, mitochondrial fmt, and formyltetrahydrofolate dehydrogenases, the mitochondrial fmt appears the most different. However, because both bacterial and mitochondrial fmt are included in the seed alignment, all credible fmt sequences score higher than any non-fmt sequence. This enzyme modifies Met on initiator tRNA to f-Met.
Probab=40.00 E-value=84 Score=33.75 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=42.9
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC-----------CChhHHhcCCeEEEeCCCCc-----hh
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRGEP-----SF 306 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G-----------gL~~eL~~~gIkVl~~~~~~-----sf 306 (663)
+||+|+ |.+...+...++|.+.||+|..|+...+. .+.+...+.+|+++...... ..
T Consensus 1 mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~pd~~~~r~~~~~~~~v~~~A~~~~Ipv~~~~~~~~~~~~~~ 73 (313)
T TIGR00460 1 LRIVFF-------GTPTFSLPVLEELREDNFEVVGVVTQPDKPAGRGKKLTPPPVKVLAEEKGIPVFQPEKQRQLEELPL 73 (313)
T ss_pred CEEEEE-------CCCHHHHHHHHHHHhCCCcEEEEEcCCCCccCCCCCCCCChHHHHHHHcCCCEEecCCCCcHHHHHH
Confidence 467776 44445567778888899999877643321 13344556799987543221 12
Q ss_pred hhhcCccEEEEC
Q 006050 307 KTSMKADLVIAG 318 (663)
Q Consensus 307 k~~~k~DLVian 318 (663)
....++|++++.
T Consensus 74 l~~~~~Dliv~~ 85 (313)
T TIGR00460 74 VRELKPDVIVVV 85 (313)
T ss_pred HHhhCCCEEEEc
Confidence 235689999864
No 168
>PRK06988 putative formyltransferase; Provisional
Probab=39.96 E-value=57 Score=35.11 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=42.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC--------CChhHHhcCCeEEEeCCCC--c---hhhhh
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGE--P---SFKTS 309 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G--------gL~~eL~~~gIkVl~~~~~--~---sfk~~ 309 (663)
+||+++ |.+..-+...+.|.+.|++|.+|+...+. .+.+...+.||+++..... . ..-..
T Consensus 3 mkIvf~-------Gs~~~a~~~L~~L~~~~~~i~~Vvt~~d~~~~~~~~~~v~~~A~~~gip~~~~~~~~~~~~~~~l~~ 75 (312)
T PRK06988 3 PRAVVF-------AYHNVGVRCLQVLLARGVDVALVVTHEDNPTENIWFGSVAAVAAEHGIPVITPADPNDPELRAAVAA 75 (312)
T ss_pred cEEEEE-------eCcHHHHHHHHHHHhCCCCEEEEEcCCCCCccCcCCCHHHHHHHHcCCcEEccccCCCHHHHHHHHh
Confidence 688887 33334556667788889999877644321 1234455679998753211 1 12235
Q ss_pred cCccEEEEC
Q 006050 310 MKADLVIAG 318 (663)
Q Consensus 310 ~k~DLVian 318 (663)
.++|++++-
T Consensus 76 ~~~Dliv~~ 84 (312)
T PRK06988 76 AAPDFIFSF 84 (312)
T ss_pred cCCCEEEEe
Confidence 689999753
No 169
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=39.60 E-value=39 Score=37.44 Aligned_cols=66 Identities=24% Similarity=0.294 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECchh
Q 006050 252 LSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (663)
Q Consensus 252 Ls~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianSav 321 (663)
+..||+ -|..||..|.+.|++|++.-.........+|...||++........+ ...+|+|+..+++
T Consensus 5 igigG~--gm~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~--~~~~d~vV~SpgI 70 (448)
T TIGR01081 5 LGICGT--FMGGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQL--EPKPDLVVIGNAM 70 (448)
T ss_pred EEECHH--hHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHC--CCCCCEEEECCCC
Confidence 455777 67889999999999987532111111223577779988753221111 1358999987765
No 170
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=39.00 E-value=38 Score=39.39 Aligned_cols=48 Identities=25% Similarity=0.331 Sum_probs=40.5
Q ss_pred CCCCcEEEcCCcchHHHHHHHcc-EEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 603 NLSKAMLWTPATTRVASLYSAAD-VYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 603 gLs~~V~~~G~~~dv~~lysaAD-V~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
-.+.+|+.+..--+..++++..| ||+.+|+ +| .||+.||+||+++...
T Consensus 205 ~~~~r~~ll~edfnpisll~~~dkvy~~ts~-----mg---feall~~~~~~~fg~p 253 (671)
T COG3563 205 SQQHRVHLLAEDFNPISLLQNVDKVYCVTSQ-----MG---FEALLCGKPLTTFGLP 253 (671)
T ss_pred ccCceEEEecccCChHHHHHhcceeEEeecc-----cc---HHHHhcCCceeeecch
Confidence 35678999988888999999999 9999996 22 7999999999987653
No 171
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=37.87 E-value=96 Score=35.02 Aligned_cols=43 Identities=21% Similarity=0.255 Sum_probs=37.3
Q ss_pred CcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEE
Q 006050 606 KAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLE 654 (663)
Q Consensus 606 ~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVa 654 (663)
.+|....++.+..+|+.+||..|.-+ || +++.|=+.+|+|.+.
T Consensus 277 p~i~I~~f~~~~~~ll~gA~~vVSm~-----GY-NTvCeILs~~k~aLi 319 (400)
T COG4671 277 PHISIFEFRNDFESLLAGARLVVSMG-----GY-NTVCEILSFGKPALI 319 (400)
T ss_pred CCeEEEEhhhhHHHHHHhhheeeecc-----cc-hhhhHHHhCCCceEE
Confidence 68999999999999999999988655 33 578999999999875
No 172
>KOG3742 consensus Glycogen synthase [Carbohydrate transport and metabolism]
Probab=37.75 E-value=10 Score=43.59 Aligned_cols=43 Identities=16% Similarity=0.233 Sum_probs=41.1
Q ss_pred hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCc
Q 006050 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLL 660 (663)
Q Consensus 616 dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l 660 (663)
|..++.+.|.+-|+||. .|++|-+..|.--+|+|-|.|+..|+
T Consensus 493 DYeeFVRGCHLGVFPSY--YEPWGYTPAECTVMGiPSvtTNlSGF 535 (692)
T KOG3742|consen 493 DYEEFVRGCHLGVFPSY--YEPWGYTPAECTVMGIPSVTTNLSGF 535 (692)
T ss_pred CHHHHhccccccccccc--cCCCCCCchheEEeccccccccccch
Confidence 88999999999999999 99999999999999999999998875
No 173
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=37.58 E-value=45 Score=38.20 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=31.4
Q ss_pred CCCcEEEcCCcchHHHHH--HHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 604 LSKAMLWTPATTRVASLY--SAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 604 Ls~~V~~~G~~~dv~~ly--saADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
++++|.+.+..+. .+++ ..+++||.-. |.| .+.||+.+|+|+|+-..
T Consensus 344 ~p~Nv~i~~w~Pq-~~lL~hp~v~~fItHG-----G~~-s~~Eal~~GvP~v~iP~ 392 (507)
T PHA03392 344 LPANVLTQKWFPQ-RAVLKHKNVKAFVTQG-----GVQ-STDEAIDALVPMVGLPM 392 (507)
T ss_pred CCCceEEecCCCH-HHHhcCCCCCEEEecC-----Ccc-cHHHHHHcCCCEEECCC
Confidence 4556655555442 4566 4477777655 333 67999999999998643
No 174
>PF04230 PS_pyruv_trans: Polysaccharide pyruvyl transferase; InterPro: IPR007345 Pyruvyl-transferases are involved in peptidoglycan-associated polymer biosynthesis. CsaB in Bacillus anthracis is necessary for the non-covalent anchoring of proteins containing an SLH (S-layer homology) domain to peptidoglycan-associated pyruvylated polysaccharides. WcaK and AmsJ are involved in the biosynthesis of colanic acid in Escherichia coli and of amylovoran in Erwinia amylovora [, ].
Probab=37.00 E-value=56 Score=31.47 Aligned_cols=35 Identities=26% Similarity=0.366 Sum_probs=31.2
Q ss_pred hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCC
Q 006050 616 RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQK 657 (663)
Q Consensus 616 dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~ 657 (663)
++..+|+.||++|-... -..+=||++|+|+|+-+.
T Consensus 250 ~~~~~~~~~~~~Is~Rl-------H~~I~a~~~g~P~i~i~y 284 (286)
T PF04230_consen 250 ELLELISQADLVISMRL-------HGAILALSLGVPVIAISY 284 (286)
T ss_pred HHHHHHhcCCEEEecCC-------HHHHHHHHcCCCEEEEec
Confidence 89999999999999987 478899999999998654
No 175
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=36.84 E-value=3.5e+02 Score=28.19 Aligned_cols=40 Identities=25% Similarity=0.164 Sum_probs=30.7
Q ss_pred EEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 609 LWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 609 ~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.+.|.++ +...+++.||++|-+-- -++ ==|-|+|+|+|+-
T Consensus 238 ~l~g~~sL~el~ali~~a~l~I~~DS-----gp~--HlAaa~g~P~i~l 279 (319)
T TIGR02193 238 VVLPKMSLAEVAALLAGADAVVGVDT-----GLT--HLAAALDKPTVTL 279 (319)
T ss_pred eecCCCCHHHHHHHHHcCCEEEeCCC-----hHH--HHHHHcCCCEEEE
Confidence 5678766 89999999999999875 222 2355889999973
No 176
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=36.65 E-value=44 Score=37.19 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=35.2
Q ss_pred CCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCC
Q 006050 604 LSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKK 658 (663)
Q Consensus 604 Ls~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~ 658 (663)
+++++...+..+ -..++..||++|... |+| .+.||+.+|+|+|+-...
T Consensus 282 ~p~n~~v~~~~p-~~~~l~~ad~vI~hG-----G~g-tt~eaL~~gvP~vv~P~~ 329 (406)
T COG1819 282 VPDNVIVADYVP-QLELLPRADAVIHHG-----GAG-TTSEALYAGVPLVVIPDG 329 (406)
T ss_pred CCCceEEecCCC-HHHHhhhcCEEEecC-----Ccc-hHHHHHHcCCCEEEecCC
Confidence 344444444443 335999999999998 455 679999999999987554
No 177
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=36.57 E-value=1.1e+02 Score=30.12 Aligned_cols=56 Identities=21% Similarity=0.244 Sum_probs=36.7
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEE--EEEcCCCCChhHHhcCCeEEEe
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSA--VVLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~v--VvLs~~GgL~~eL~~~gIkVl~ 299 (663)
.++++++|-.-++.|| ++...++.|.+.|++|.- +++.+..+-.+.+...|+++..
T Consensus 103 ~g~~VlIVDDvi~TG~---T~~~~~~~l~~~Ga~v~~~~~~vdr~~g~~~~l~~~gv~~~s 160 (170)
T PRK13811 103 KGKRVLLVEDVTTSGG---SALYGIEQLRAAGAVVDDVVTVVDREQGAEELLAELGITLTP 160 (170)
T ss_pred CCCEEEEEEecccccH---HHHHHHHHHHHCCCeEEEEEEEEECCccHHHHHHhcCCcEEE
Confidence 4678887766665444 456666777789998743 3345544545566678888764
No 178
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=35.07 E-value=85 Score=34.98 Aligned_cols=71 Identities=24% Similarity=0.294 Sum_probs=42.6
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHH-HHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECc
Q 006050 241 WSRKFILIFHELSMTGAPLSMME-LATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smme-LA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
..++|++| .+|| +-|. +|+.|.++|++|++.-. +......+|.+.||.+.... .. .....+|+|+..+
T Consensus 6 ~~~~v~vi----G~G~---sG~s~~a~~L~~~G~~V~~~D~-~~~~~~~~l~~~gi~~~~~~-~~--~~~~~~d~vv~sp 74 (461)
T PRK00421 6 RIKRIHFV----GIGG---IGMSGLAEVLLNLGYKVSGSDL-KESAVTQRLLELGAIIFIGH-DA--ENIKDADVVVYSS 74 (461)
T ss_pred CCCEEEEE----EEch---hhHHHHHHHHHhCCCeEEEECC-CCChHHHHHHHCCCEEeCCC-CH--HHCCCCCEEEECC
Confidence 34666655 3333 4455 78999999999875421 11123456777799886422 11 1223689999876
Q ss_pred hhh
Q 006050 320 AVC 322 (663)
Q Consensus 320 av~ 322 (663)
.+.
T Consensus 75 gi~ 77 (461)
T PRK00421 75 AIP 77 (461)
T ss_pred CCC
Confidence 543
No 179
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=34.21 E-value=79 Score=31.68 Aligned_cols=37 Identities=16% Similarity=0.150 Sum_probs=25.1
Q ss_pred HhcCCEEEEecHHHHHHHHHHhHhhcccCCCCcEEeecCcchhh
Q 006050 359 LDRVKLLVFLSESQTKQWLTWCEEEKLKLRSQPAVVPLSVNDEL 402 (663)
Q Consensus 359 l~rvk~lIflSes~~k~w~~~~~~~~i~l~s~~~VVp~gVndel 402 (663)
+..++..+.-++.|.+++-.++ ++++.|++-|||.+.
T Consensus 133 l~~~D~~isPT~wQ~~~fP~~~-------r~kI~VihdGiDt~~ 169 (171)
T PF12000_consen 133 LEQADAGISPTRWQRSQFPAEF-------RSKISVIHDGIDTDR 169 (171)
T ss_pred HHhCCcCcCCCHHHHHhCCHHH-------HcCcEEeecccchhh
Confidence 3456777777777776654433 357899999998653
No 180
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=34.02 E-value=1.1e+02 Score=28.12 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=31.1
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCC
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~Gg 285 (663)
|++-|+...+..|.....++||..|.++|..|.++-+....+
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~~~~~Vllid~~~~~~ 42 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALARKGKKVLLIDFDFFSP 42 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTT-EEEEE--SSS-
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHhcCCCeEEEECCCCCC
Confidence 566666666778898999999999999999988887665554
No 181
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=33.54 E-value=1.5e+02 Score=32.64 Aligned_cols=72 Identities=21% Similarity=0.146 Sum_probs=41.3
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCC--CCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECc
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--GGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~--GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
.++++++ |++. .-+..|..|++.|++|.+.-.... .....++...|+++.......... ...+|+|+.++
T Consensus 5 ~k~v~v~------G~g~-~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-~~~~d~vV~s~ 76 (447)
T PRK02472 5 NKKVLVL------GLAK-SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELL-DEDFDLMVKNP 76 (447)
T ss_pred CCEEEEE------eeCH-HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHh-cCcCCEEEECC
Confidence 4555554 3333 556679999999999876532111 122355777788876432221111 11389998876
Q ss_pred hh
Q 006050 320 AV 321 (663)
Q Consensus 320 av 321 (663)
++
T Consensus 77 gi 78 (447)
T PRK02472 77 GI 78 (447)
T ss_pred CC
Confidence 44
No 182
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=33.42 E-value=72 Score=35.43 Aligned_cols=80 Identities=21% Similarity=0.304 Sum_probs=48.5
Q ss_pred cccccccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCC-C-hhHHh--cCCeEEEeCCCCc---hh
Q 006050 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-L-MPELA--RRKIKVLEDRGEP---SF 306 (663)
Q Consensus 234 ~~~~~~~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~Gg-L-~~eL~--~~gIkVl~~~~~~---sf 306 (663)
.++.....+||++++ |.+-....+++.|.++|.+|..+....... . .+.+. ..+..|++..... .+
T Consensus 266 ~~~~~~l~Gkrv~i~-------gd~~~~~~l~~~L~elGm~~v~~~t~~~~~~~~~~~~~~l~~~~~v~~~~d~~~l~~~ 338 (407)
T TIGR01279 266 EPHTQLLRGKKIFFF-------GDNLLELPLARFLKRCGMEVVECGTPYIHRRFHAAELALLEGGVRIVEQPDFHRQLQR 338 (407)
T ss_pred HHHHHhcCCCEEEEE-------CCchHHHHHHHHHHHCCCEEEEecCCCCChHHHHHHHhhcCCCCeEEeCCCHHHHHHH
Confidence 345555678887775 224577889999999999997665332211 1 22221 1255666543322 22
Q ss_pred hhhcCccEEEECch
Q 006050 307 KTSMKADLVIAGSA 320 (663)
Q Consensus 307 k~~~k~DLVianSa 320 (663)
-...++|+++.|+.
T Consensus 339 i~~~~pDllig~~~ 352 (407)
T TIGR01279 339 IRATRPDLVVTGLG 352 (407)
T ss_pred HHhcCCCEEecCcc
Confidence 24568999999873
No 183
>KOG1050 consensus Trehalose-6-phosphate synthase component TPS1 and related subunits [Carbohydrate transport and metabolism]
Probab=32.62 E-value=2.9e+02 Score=33.79 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.2
Q ss_pred CCCEEEEEEecCCCCCCHHHHHHHHHHhHHhCCCC
Q 006050 441 DQDMLVLSLSSINPGKGQLLLVESAQLMIEQEPSM 475 (663)
Q Consensus 441 ~~~~lVl~VGri~p~KGqdlLLeA~~~l~e~~P~~ 475 (663)
.+..+++.+-++..-||+-.=+.|+.+.+++.|.+
T Consensus 274 ~g~klilgvD~~d~~kg~~~Kl~a~e~~L~~~pe~ 308 (732)
T KOG1050|consen 274 KGKKLILGVDRLDSIKGIQLKLLAFEQFLEEYPEW 308 (732)
T ss_pred cCCceEecccccccccCchHHHHHHHHHHHhChhh
Confidence 46789999999999999999999999999999985
No 184
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=32.43 E-value=2.2e+02 Score=31.61 Aligned_cols=47 Identities=28% Similarity=0.309 Sum_probs=28.2
Q ss_pred CCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 605 s~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
+++++.....+. .++++...+-++=+.| | -+.+.||+.+|+|+|+-.
T Consensus 322 ~~n~~~~~W~PQ-~~lL~hp~v~~fitHg---G-~~s~~Ea~~~gvP~l~~P 368 (500)
T PF00201_consen 322 PKNVLIVKWLPQ-NDLLAHPRVKLFITHG---G-LNSTQEALYHGVPMLGIP 368 (500)
T ss_dssp HTTEEEESS--H-HHHHTSTTEEEEEES------HHHHHHHHHCT--EEE-G
T ss_pred cceEEEeccccc-hhhhhcccceeeeecc---c-cchhhhhhhccCCccCCC
Confidence 456666666654 3778776665555552 2 457899999999999853
No 185
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB. The CsaB protein (cell surface anchoring B) of Bacillus anthracis adds a pyruvoyl group to peptidoglycan-associated polysaccharide. This addition is required for proteins with an S-layer homology domain (pfam00395) to bind. Within the larger group of proteins described by Pfam model pfam04230, this model represents a distinct clade that nearly exactly follows the phylogenetic distribution of the S-layer homology domain (pfam00395).
Probab=32.22 E-value=1.4e+02 Score=31.00 Aligned_cols=54 Identities=19% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 595 LEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.+.+.+...-+..|.-.....++.++++.||++|-... ..+|=|+++|+|+|+-
T Consensus 222 ~~~l~~~~~~~~~i~~~~~~~e~~~~i~~~~~vI~~Rl-------H~~I~A~~~gvP~i~i 275 (298)
T TIGR03609 222 ARALRDQLLGPAEVLSPLDPEELLGLFASARLVIGMRL-------HALILAAAAGVPFVAL 275 (298)
T ss_pred HHHHHHhcCCCcEEEecCCHHHHHHHHhhCCEEEEech-------HHHHHHHHcCCCEEEe
Confidence 34444444323345422233488899999998777765 4788999999999975
No 186
>PRK05569 flavodoxin; Provisional
Probab=32.13 E-value=1.7e+02 Score=26.99 Aligned_cols=56 Identities=21% Similarity=0.265 Sum_probs=37.1
Q ss_pred CeEEEEeCCCCCCCHHHHHH-HHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECchh
Q 006050 243 RKFILIFHELSMTGAPLSMM-ELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smm-eLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianSav 321 (663)
.|+++|.++ ++|.-..+. .++..+.+.|++|.+.-+..... .....+|.|+.++++
T Consensus 2 ~ki~iiY~S--~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~---------------------~~~~~~d~iilgsPt 58 (141)
T PRK05569 2 KKVSIIYWS--CGGNVEVLANTIADGAKEAGAEVTIKHVADAKV---------------------EDVLEADAVAFGSPS 58 (141)
T ss_pred CeEEEEEEC--CCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCH---------------------HHHhhCCEEEEECCC
Confidence 478888776 477766655 47888988999887664432110 134578888887653
No 187
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=32.08 E-value=1.6e+02 Score=28.69 Aligned_cols=73 Identities=19% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChh-------HHhcCCeEEEeCCCCchh-hhhcCcc
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMP-------ELARRKIKVLEDRGEPSF-KTSMKAD 313 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~-------eL~~~gIkVl~~~~~~sf-k~~~k~D 313 (663)
.++|+++.-.-+ .|+ --+-+|++|...|++|.++.+.....+.+ .+...+++++........ .....+|
T Consensus 25 ~~~v~il~G~Gn-NGg--Dgl~~AR~L~~~G~~V~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d 101 (169)
T PF03853_consen 25 GPRVLILCGPGN-NGG--DGLVAARHLANRGYNVTVYLVGPPEKLSEDAKQQLEILKKMGIKIIELDSDEDLSEALEPAD 101 (169)
T ss_dssp T-EEEEEE-SSH-HHH--HHHHHHHHHHHTTCEEEEEEEESSSSTSHHHHHHHHHHHHTT-EEESSCCGSGGGHHGSCES
T ss_pred CCeEEEEECCCC-ChH--HHHHHHHHHHHCCCeEEEEEEeccccCCHHHHHHHHHHHhcCCcEeeccccchhhccccccc
Confidence 466766654432 233 45778999999999999977655444332 356688988865443322 2234789
Q ss_pred EEEE
Q 006050 314 LVIA 317 (663)
Q Consensus 314 LVia 317 (663)
+||-
T Consensus 102 lIID 105 (169)
T PF03853_consen 102 LIID 105 (169)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9874
No 188
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=32.02 E-value=1.3e+02 Score=27.32 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=38.9
Q ss_pred cCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEe
Q 006050 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 240 ~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~ 299 (663)
+.+..++++ .|..|-...+++.++..+++|..|.+++ ..+.+.+...+.++.+++
T Consensus 41 ~~~~dl~I~---iS~SG~t~e~i~~~~~a~~~g~~iI~IT--~~~~l~~~~~~~~~~~~~ 95 (119)
T cd05017 41 VDRKTLVIA---VSYSGNTEETLSAVEQAKERGAKIVAIT--SGGKLLEMAREHGVPVII 95 (119)
T ss_pred CCCCCEEEE---EECCCCCHHHHHHHHHHHHCCCEEEEEe--CCchHHHHHHHcCCcEEE
Confidence 334556666 5567888888999999999999987776 345566655556777665
No 189
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=32.01 E-value=99 Score=26.72 Aligned_cols=35 Identities=23% Similarity=0.189 Sum_probs=27.5
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVv 279 (663)
+-+|+|+|.+. .--...-++|..|.++|+.|...-
T Consensus 16 k~~v~i~HG~~--eh~~ry~~~a~~L~~~G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFG--EHSGRYAHLAEFLAEQGYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcH--HHHHHHHHHHHHHHhCCCEEEEEC
Confidence 77899999973 222357789999999999987654
No 190
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=31.99 E-value=2.1e+02 Score=31.71 Aligned_cols=71 Identities=11% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhc--CCeEEEeCCCCchhhhhcCccEEEECc
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~--~gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
.++|+++ ..| ..-+..|+.|.+.|+.|.+.-.........+|.. .||++........ ....+|+|+..+
T Consensus 5 ~~~~~v~----G~g---~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~--~~~~~d~vv~sp 75 (445)
T PRK04308 5 NKKILVA----GLG---GTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDA--LDNGFDILALSP 75 (445)
T ss_pred CCEEEEE----CCC---HHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHH--HHhCCCEEEECC
Confidence 4566555 222 3445569999999999876542221112345544 4887765332211 224689999876
Q ss_pred hh
Q 006050 320 AV 321 (663)
Q Consensus 320 av 321 (663)
++
T Consensus 76 gi 77 (445)
T PRK04308 76 GI 77 (445)
T ss_pred CC
Confidence 54
No 191
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=31.83 E-value=49 Score=35.41 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEe
Q 006050 259 LSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 259 ~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~ 299 (663)
.-++.||++|.++||+|.+++. ....+.+...|+.++.
T Consensus 10 ~P~l~lA~~L~~~Gh~V~~~~~---~~~~~~v~~~G~~~~~ 47 (392)
T TIGR01426 10 NPTLGVVEELVARGHRVTYATT---EEFAERVEAAGAEFVL 47 (392)
T ss_pred cccHHHHHHHHhCCCeEEEEeC---HHHHHHHHHcCCEEEe
Confidence 3478999999999999998763 3355666677777653
No 192
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=31.72 E-value=79 Score=31.05 Aligned_cols=25 Identities=16% Similarity=0.052 Sum_probs=18.3
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEE
Q 006050 255 TGAPLSMMELATELLSCGATVSAVV 279 (663)
Q Consensus 255 gGAp~smmeLA~~L~s~G~~V~vVv 279 (663)
||+.-.-..+|.+|.+.|++|.++.
T Consensus 12 Gas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 12 GANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEc
Confidence 3333356789999999999987654
No 193
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=31.36 E-value=5.6e+02 Score=27.12 Aligned_cols=42 Identities=12% Similarity=0.071 Sum_probs=30.1
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G 284 (663)
++|++|...=..-|.......||.+|.+.|..|.++-.....
T Consensus 2 ~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n 43 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVN 43 (241)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCC
Confidence 456666655444566667788999999999999877655434
No 194
>PRK13809 orotate phosphoribosyltransferase; Provisional
Probab=31.27 E-value=1.7e+02 Score=29.99 Aligned_cols=56 Identities=23% Similarity=0.298 Sum_probs=33.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEE--EEcCCCCChhHHhcCCeEEEe
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAV--VLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vV--vLs~~GgL~~eL~~~gIkVl~ 299 (663)
.++++++|-.-+ .||+ ++.+.++.|.+.|++|..+ .+.+..+-.+.+...|+++..
T Consensus 117 ~g~~VlIVDDVi-TTG~--Ti~~a~~~L~~~G~~vv~v~vlvdr~~~~~~~l~~~gi~v~s 174 (206)
T PRK13809 117 PGQTCLVINDMV-SSGK--SIIETAVALEEEGLVVREALVFLDRQKGACQPLGPQGIKLSS 174 (206)
T ss_pred CCCEEEEEEecc-ccCH--HHHHHHHHHHHCCCEEEEEEEEEECcccHHHHHHhcCCCEEE
Confidence 456766665544 4666 5677888888999887433 233322334445556766643
No 195
>PRK00005 fmt methionyl-tRNA formyltransferase; Reviewed
Probab=30.44 E-value=1.5e+02 Score=31.84 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=42.4
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC-----------CChhHHhcCCeEEEeCCC--Cch---h
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-----------GLMPELARRKIKVLEDRG--EPS---F 306 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G-----------gL~~eL~~~gIkVl~~~~--~~s---f 306 (663)
+||+|+ |.+...+...+.|.+.|+++..|+...+. .+.+...+.+|+++.... ... .
T Consensus 1 mkIvf~-------G~~~~a~~~L~~L~~~~~~i~~Vvt~~~~~~~r~~~~~~~~v~~~a~~~~Ip~~~~~~~~~~~~~~~ 73 (309)
T PRK00005 1 MRIVFM-------GTPEFAVPSLKALLESGHEVVAVVTQPDRPAGRGKKLTPSPVKQLALEHGIPVLQPEKLRDPEFLAE 73 (309)
T ss_pred CEEEEE-------CCCHHHHHHHHHHHHCCCcEEEEECCCCCCCCCCCCCCCCHHHHHHHHcCCCEECcCCCCCHHHHHH
Confidence 467776 44445567778888889998877643321 124455678999975332 111 2
Q ss_pred hhhcCccEEEEC
Q 006050 307 KTSMKADLVIAG 318 (663)
Q Consensus 307 k~~~k~DLVian 318 (663)
-...++|++++-
T Consensus 74 l~~~~~Dliv~~ 85 (309)
T PRK00005 74 LAALNADVIVVV 85 (309)
T ss_pred HHhcCcCEEEEe
Confidence 235689999863
No 196
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=30.29 E-value=2.1e+02 Score=28.40 Aligned_cols=74 Identities=19% Similarity=0.212 Sum_probs=43.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHH-HHHHHHH-CCCeEEEEEEcCCCCChhHHh-cCCeEEEeCCCCchhhhhcCccEEEECc
Q 006050 243 RKFILIFHELSMTGAPLSMME-LATELLS-CGATVSAVVLSKRGGLMPELA-RRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smme-LA~~L~s-~G~~V~vVvLs~~GgL~~eL~-~~gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
+||++|.++. +|.-..|.+ +++.+.+ .|++|.++.+... +..++. ..+......-..........+|.|+.++
T Consensus 2 ~kilIvy~S~--~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gs 77 (200)
T PRK03767 2 AKVLVLYYSM--YGHIETMAEAVAEGAREVAGAEVTIKRVPET--VPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGT 77 (200)
T ss_pred CeEEEEEcCC--CCHHHHHHHHHHHHHhhcCCcEEEEEecccc--CCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEe
Confidence 4899998886 676666655 7777777 8999998877532 223222 1121110000001134456789998876
Q ss_pred h
Q 006050 320 A 320 (663)
Q Consensus 320 a 320 (663)
.
T Consensus 78 P 78 (200)
T PRK03767 78 P 78 (200)
T ss_pred c
Confidence 4
No 197
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=30.29 E-value=1.1e+02 Score=32.84 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=39.2
Q ss_pred HHHHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 592 KEILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 592 k~~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
++..+++.+..+ ..+.+.|.++ ++..+++.||++|-+.- |.+ ==|-|.|+|+|+--
T Consensus 220 ~e~~~~i~~~~~--~~~~l~~k~sL~e~~~li~~a~l~I~~DS------g~~-HlAaA~~~P~I~iy 277 (334)
T COG0859 220 EERAEEIAKGLP--NAVILAGKTSLEELAALIAGADLVIGNDS------GPM-HLAAALGTPTIALY 277 (334)
T ss_pred HHHHHHHHHhcC--CccccCCCCCHHHHHHHHhcCCEEEccCC------hHH-HHHHHcCCCEEEEE
Confidence 344556666542 2333778777 99999999999999886 222 23669999999853
No 198
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=30.18 E-value=85 Score=35.06 Aligned_cols=79 Identities=18% Similarity=0.310 Sum_probs=47.4
Q ss_pred ccccccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHH-CCCeEEEEEEcCCC-CC-hhHHh--cCCeEEEeCCCC---chh
Q 006050 235 DFARFVWSRKFILIFHELSMTGAPLSMMELATELLS-CGATVSAVVLSKRG-GL-MPELA--RRKIKVLEDRGE---PSF 306 (663)
Q Consensus 235 ~~~~~~~~kKILLI~heLs~gGAp~smmeLA~~L~s-~G~~V~vVvLs~~G-gL-~~eL~--~~gIkVl~~~~~---~sf 306 (663)
++.....++|+.++ |.+-..+.+++.|.+ +|.+|..+...... .. .+++. ..++.|++.... ...
T Consensus 283 ~~~~~l~Gkrvai~-------g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~~D~~~l~~~ 355 (427)
T PRK02842 283 PYRELLRGKRVFFL-------PDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEGQDVERQLDR 355 (427)
T ss_pred HhhhhcCCcEEEEE-------CCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEECCCHHHHHHH
Confidence 34445677887665 233567889999998 99999766532221 11 22222 236667665332 122
Q ss_pred hhhcCccEEEECch
Q 006050 307 KTSMKADLVIAGSA 320 (663)
Q Consensus 307 k~~~k~DLVianSa 320 (663)
-...++|+++.|+.
T Consensus 356 i~~~~pDllig~~~ 369 (427)
T PRK02842 356 IRALRPDLVVCGLG 369 (427)
T ss_pred HHHcCCCEEEccCc
Confidence 24568999999974
No 199
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=29.91 E-value=81 Score=36.20 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=28.2
Q ss_pred CCCeEEEEeCCCCCCCHHH-HHHHHHHHHHHCCCeEEEEEE
Q 006050 241 WSRKFILIFHELSMTGAPL-SMMELATELLSCGATVSAVVL 280 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~-smmeLA~~L~s~G~~V~vVvL 280 (663)
.+-||+.+++. .++... .+-.++++|.++||+|++++.
T Consensus 19 ~~~kIl~~~P~--~~~SH~~~~~~l~~~La~rGH~VTvi~p 57 (507)
T PHA03392 19 RAARILAVFPT--PAYSHHSVFKVYVEALAERGHNVTVIKP 57 (507)
T ss_pred CcccEEEEcCC--CCCcHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34567777665 355554 456799999999999999864
No 200
>PRK13054 lipid kinase; Reviewed
Probab=29.54 E-value=1.5e+02 Score=31.29 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=30.2
Q ss_pred cCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC
Q 006050 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (663)
Q Consensus 240 ~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G 284 (663)
|+.+++++|.+.- +|+....-++...|.+.|+++.+......+
T Consensus 1 ~~~~~~~~i~N~~--~~~~~~~~~~~~~l~~~g~~~~v~~t~~~~ 43 (300)
T PRK13054 1 MTFPKSLLILNGK--SAGNEELREAVGLLREEGHTLHVRVTWEKG 43 (300)
T ss_pred CCCceEEEEECCC--ccchHHHHHHHHHHHHcCCEEEEEEecCCC
Confidence 5678999998833 334456677888899999998775533333
No 201
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.08 E-value=3.1e+02 Score=29.30 Aligned_cols=59 Identities=14% Similarity=0.157 Sum_probs=43.5
Q ss_pred HHHHHHHhCCCCCcEEEcCCcc-hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHH-cCCCEEEeCC
Q 006050 594 ILEFLSQHSNLSKAMLWTPATT-RVASLYSAADVYVINSQGLGETFGRVTIEAMA-FGVPMLEAQK 657 (663)
Q Consensus 594 ~L~~l~~~~gLs~~V~~~G~~~-dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA-~GlPVVatd~ 657 (663)
+|....++.|++ +.-..+.. ++..+...+|++=++|. +..-.-+++|+| .|+||+.+.-
T Consensus 70 ~L~~~~~~~Gl~--~~Tev~d~~~v~~~~e~vdilqIgs~---~~~n~~LL~~va~tgkPVilk~G 130 (250)
T PRK13397 70 YLHEVCQEFGLL--SVSEIMSERQLEEAYDYLDVIQVGAR---NMQNFEFLKTLSHIDKPILFKRG 130 (250)
T ss_pred HHHHHHHHcCCC--EEEeeCCHHHHHHHHhcCCEEEECcc---cccCHHHHHHHHccCCeEEEeCC
Confidence 388889999996 44444433 66666678999999995 555566788876 4999998765
No 202
>PRK06179 short chain dehydrogenase; Provisional
Probab=29.08 E-value=1.4e+02 Score=29.98 Aligned_cols=35 Identities=17% Similarity=0.055 Sum_probs=22.6
Q ss_pred cCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Q 006050 240 VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (663)
Q Consensus 240 ~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVv 279 (663)
|+..+.++|+ ||.--.-..+|.+|.+.|++|.++.
T Consensus 1 m~~~~~vlVt-----Gasg~iG~~~a~~l~~~g~~V~~~~ 35 (270)
T PRK06179 1 MSNSKVALVT-----GASSGIGRATAEKLARAGYRVFGTS 35 (270)
T ss_pred CCCCCEEEEe-----cCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4444555663 2222345678899999999987664
No 203
>PF12038 DUF3524: Domain of unknown function (DUF3524); InterPro: IPR022701 This domain is functionally uncharacterised and is found in bacteria and eukaryotes. It is about 170 amino acids in length and is found associated with PF00534 from PFAM. Two conserved sequence motifs are found within this entry: HENQ and FNS. There is also a single completely conserved residue S that may be functionally important.
Probab=28.96 E-value=5e+02 Score=26.39 Aligned_cols=125 Identities=16% Similarity=0.108 Sum_probs=65.3
Q ss_pred CeEEEEeCCCCCCCHHHHHHH-HHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECchh
Q 006050 243 RKFILIFHELSMTGAPLSMME-LATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smme-LA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianSav 321 (663)
||||++..- .||.-+...+ |+.++ .|++++++|..+.- . -.-+|-.+.-. ..+.....+|+|++.+.+
T Consensus 1 M~ILlle~y--~ggSHk~~~~~L~~~~---~~~~~lltLP~r~w-~--WRmRg~AL~~a---~~~~~~~~~dll~aTsml 69 (168)
T PF12038_consen 1 MRILLLEPY--YGGSHKQWADGLAAHS---EHEWTLLTLPARKW-H--WRMRGAALYFA---QQIPLSHSYDLLFATSML 69 (168)
T ss_pred CeEEEEccc--cccCHHHHHHHHHHhc---cCCEEEEEcCCCcc-c--cccCCCHHHHh---hccccccCCCEEEeeccc
Confidence 578888554 5788887665 44444 57888888864321 0 01111111000 011223457999998743
Q ss_pred hHHHHHHHHHhCCC-CCccEEEEEeehhhhhHHHH----------HHH--HhcCCEEEEecHHHHHHHHHHhH
Q 006050 322 CATWIDQYITRFPA-GGSQVVWWIMENRREYFDRA----------KLV--LDRVKLLVFLSESQTKQWLTWCE 381 (663)
Q Consensus 322 ~aswi~~yi~~~pa-~~~~vvwwi~E~r~~yf~r~----------k~v--l~rvk~lIflSes~~k~w~~~~~ 381 (663)
- +..+..-.|. +..+.+-+.|||.-.|-.+. ..+ .-.++.++|-|....+.+..-+.
T Consensus 70 d---La~l~gL~p~l~~~p~ilYFHENQl~YP~~~~~~rd~~~~~~ni~saLaAD~v~FNS~~nr~sFL~~~~ 139 (168)
T PF12038_consen 70 D---LATLRGLRPDLANVPKILYFHENQLAYPVSPGQERDFQYGMNNIYSALAADRVVFNSAFNRDSFLDGIP 139 (168)
T ss_pred c---HHHHHhhccCCCCCCEEEEEecCcccCCCCCCccccccHHHHHHHHHHhceeeeecchhhHHHHHHHHH
Confidence 2 1222332332 22334445799864432110 011 12368899999988887765444
No 204
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=28.66 E-value=1.9e+02 Score=32.12 Aligned_cols=75 Identities=11% Similarity=0.111 Sum_probs=42.5
Q ss_pred ccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhc--CCeEEEeCCCCchhhhhcCccEEE
Q 006050 239 FVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELAR--RKIKVLEDRGEPSFKTSMKADLVI 316 (663)
Q Consensus 239 ~~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~--~gIkVl~~~~~~sfk~~~k~DLVi 316 (663)
+|++--.++| +..||. -|.+|+.|.+.|++|.+.-.........+|.. .||++....... ....++|+|+
T Consensus 2 ~~~~~~~~~v---~G~G~s---G~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~--~~~~~~d~vV 73 (448)
T PRK03803 2 LMQSDGLHIV---VGLGKT---GLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDC--ELLVQASEII 73 (448)
T ss_pred ccccCCeEEE---EeecHh---HHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCCh--HHhcCCCEEE
Confidence 4566555555 344543 33499999999999876432211112234655 388876432111 1224689998
Q ss_pred ECchh
Q 006050 317 AGSAV 321 (663)
Q Consensus 317 anSav 321 (663)
..+++
T Consensus 74 ~sp~i 78 (448)
T PRK03803 74 ISPGL 78 (448)
T ss_pred ECCCC
Confidence 87654
No 205
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=28.51 E-value=8.9e+02 Score=27.27 Aligned_cols=38 Identities=18% Similarity=0.032 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEe
Q 006050 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 261 mmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~ 299 (663)
.-++..+|.+.||+|.+.+ -+.|.+.+-|..-|++...
T Consensus 16 Fk~lI~elekkG~ev~iT~-rd~~~v~~LLd~ygf~~~~ 53 (346)
T COG1817 16 FKNLIWELEKKGHEVLITC-RDFGVVTELLDLYGFPYKS 53 (346)
T ss_pred HHHHHHHHHhCCeEEEEEE-eecCcHHHHHHHhCCCeEe
Confidence 5679999999999997654 5567777777777877644
No 206
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=28.29 E-value=1.8e+02 Score=28.45 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=34.8
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G 284 (663)
..+|++.|+..-...|......+||..|++.|+.|.+|-+...+
T Consensus 15 ~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~G~rVllID~D~~~ 58 (204)
T TIGR01007 15 AEIKVLLITSVKPGEGKSTTSANIAVAFAQAGYKTLLIDGDMRN 58 (204)
T ss_pred CCCcEEEEecCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 45788888777666788888999999999999999877654333
No 207
>COG0461 PyrE Orotate phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=28.03 E-value=1.2e+02 Score=31.30 Aligned_cols=70 Identities=24% Similarity=0.350 Sum_probs=45.0
Q ss_pred ccccccCC-ccccccccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEE--EEEcCCCCChhHHhcCCeEEEeC
Q 006050 225 KRSGTCDR-KGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSA--VVLSKRGGLMPELARRKIKVLED 300 (663)
Q Consensus 225 ~~~~~c~~-k~~~~~~~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~v--VvLs~~GgL~~eL~~~gIkVl~~ 300 (663)
|+.||=.. .|.+. .++|+++|-.=. .||. ++++-+..|.+.|.+|.- +++.+..+-.+.+.+.|+++++.
T Consensus 97 K~hG~~~~ieG~~~---~G~kVvvVEDVi-TTG~--Si~eai~~l~~~G~~V~gv~~ivDR~~~~~~~~~~~g~~~~sl 169 (201)
T COG0461 97 KDHGTGGLIEGGEV---KGEKVVVVEDVI-TTGG--SILEAVEALREAGAEVVGVAVIVDRQSGAKEVLKEYGVKLVSL 169 (201)
T ss_pred ccCCCcceeEecCC---CCCEEEEEEecc-cCCH--hHHHHHHHHHHcCCeEEEEEEEEecchhHHHHHHhcCCceEEE
Confidence 44566422 33333 577877775444 4555 678888888999999843 34455555566677788887654
No 208
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=27.79 E-value=1.6e+02 Score=29.76 Aligned_cols=56 Identities=13% Similarity=0.230 Sum_probs=36.6
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEE--EEEcCCCCChhHHhcCCeEEEe
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSA--VVLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~v--VvLs~~GgL~~eL~~~gIkVl~ 299 (663)
...|+++|-.=+..||. +.+.++.+.+.|++|.. +++.+..+-.+.+...||++..
T Consensus 121 ~g~rVlIVDDVitTGgS---~~~~i~~l~~~Ga~V~~v~vlvdr~~g~~~~l~~~gi~~~s 178 (187)
T PRK13810 121 PEDRIVMLEDVTTSGGS---VREAIEVVREAGAYIKYVITVVDREEGAEENLKEADVELVP 178 (187)
T ss_pred CcCEEEEEEeccCCChH---HHHHHHHHHHCCCEEEEEEEEEECCcChHHHHHHcCCcEEE
Confidence 46788888766665554 45566666778998743 3344544556677788888764
No 209
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=27.77 E-value=2.2e+02 Score=30.16 Aligned_cols=60 Identities=15% Similarity=0.170 Sum_probs=43.8
Q ss_pred HHHHHHHhCCCCCcEEEcCCcc-hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHc-CCCEEEeCCC
Q 006050 594 ILEFLSQHSNLSKAMLWTPATT-RVASLYSAADVYVINSQGLGETFGRVTIEAMAF-GVPMLEAQKK 658 (663)
Q Consensus 594 ~L~~l~~~~gLs~~V~~~G~~~-dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~-GlPVVatd~~ 658 (663)
+|++.+++.|++ +.-..+.. .+..+...+|++-++|. +..-.-++++.|. |+||+.+.--
T Consensus 80 ~l~~~~~~~Gl~--~~t~~~d~~~~~~l~~~~d~lkI~s~---~~~n~~LL~~~a~~gkPVilk~G~ 141 (260)
T TIGR01361 80 LLRRAADEHGLP--VVTEVMDPRDVEIVAEYADILQIGAR---NMQNFELLKEVGKQGKPVLLKRGM 141 (260)
T ss_pred HHHHHHHHhCCC--EEEeeCChhhHHHHHhhCCEEEECcc---cccCHHHHHHHhcCCCcEEEeCCC
Confidence 378889999986 44444433 56666677999999994 6666668888765 9999987653
No 210
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=27.76 E-value=2.5e+02 Score=31.86 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=41.6
Q ss_pred cCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHC--CCeEEEEEEcCCCCChhHHh-cCCeEEE
Q 006050 240 VWSRKFILIFHELSMTGAPLSMMELATELLSC--GATVSAVVLSKRGGLMPELA-RRKIKVL 298 (663)
Q Consensus 240 ~~~kKILLI~heLs~gGAp~smmeLA~~L~s~--G~~V~vVvLs~~GgL~~eL~-~~gIkVl 298 (663)
+..+||++-+|++..-|--+.+..+|..|.+. |++|.+++ ++.....+. ..||..+
T Consensus 7 ~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~Is---G~~~~~~F~~~~gVd~V 65 (400)
T COG4671 7 SKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIIS---GGPPAGGFPGPAGVDFV 65 (400)
T ss_pred hccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEe---CCCccCCCCCcccCceE
Confidence 33569999999998889999999999999998 99998775 232222222 3566655
No 211
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=27.14 E-value=1.4e+02 Score=36.20 Aligned_cols=64 Identities=23% Similarity=0.313 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECchhh
Q 006050 253 SMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAVC 322 (663)
Q Consensus 253 s~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianSav~ 322 (663)
.+||. -|-.||+.|.+.|++|++.-. +......+|...||++...... .....+|+|+..+++.
T Consensus 11 G~G~s--G~salA~~L~~~G~~V~~sD~-~~~~~~~~L~~~gi~~~~g~~~---~~~~~~d~vV~SpgI~ 74 (809)
T PRK14573 11 GIGGI--GMSALAHILLDRGYSVSGSDL-SEGKTVEKLKAKGARFFLGHQE---EHVPEDAVVVYSSSIS 74 (809)
T ss_pred EecHH--hHHHHHHHHHHCCCeEEEECC-CCChHHHHHHHCCCEEeCCCCH---HHcCCCCEEEECCCcC
Confidence 44443 234468889999999875422 1122456688889998754321 1223689999877543
No 212
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.13 E-value=1e+02 Score=27.05 Aligned_cols=52 Identities=15% Similarity=0.261 Sum_probs=40.1
Q ss_pred HHHHHHhCCCCCcEEEcCCcchHHHHHH--HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEe
Q 006050 595 LEFLSQHSNLSKAMLWTPATTRVASLYS--AADVYVINSQGLGETFGRVTIEAMAFGVPMLEA 655 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~dv~~lys--aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVat 655 (663)
.+..++.++++ ..++..++++ ..|+.++.+. .+.-.-.+.+|+..|++|++-
T Consensus 39 ~~~~~~~~~~~-------~~~~~~~ll~~~~~D~V~I~tp--~~~h~~~~~~~l~~g~~v~~E 92 (120)
T PF01408_consen 39 AEAFAEKYGIP-------VYTDLEELLADEDVDAVIIATP--PSSHAEIAKKALEAGKHVLVE 92 (120)
T ss_dssp HHHHHHHTTSE-------EESSHHHHHHHTTESEEEEESS--GGGHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHhccc-------chhHHHHHHHhhcCCEEEEecC--CcchHHHHHHHHHcCCEEEEE
Confidence 55667888776 3345778888 6898888887 666677889999999999863
No 213
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=26.38 E-value=2.1e+02 Score=31.39 Aligned_cols=69 Identities=17% Similarity=0.258 Sum_probs=41.3
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCC-----------ChhHHhcCCeEEEeCCCCc--hh---
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-----------LMPELARRKIKVLEDRGEP--SF--- 306 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~Gg-----------L~~eL~~~gIkVl~~~~~~--sf--- 306 (663)
+||+|+ |.|-.-....+.|..+||+|.+|+...+.. ......+.||+|+....-. -+
T Consensus 2 mkivF~-------GTp~fa~~~L~~L~~~~~eivaV~Tqpdkp~gR~~~l~~spVk~~A~~~~ipv~qP~~l~~~e~~~~ 74 (307)
T COG0223 2 MRIVFF-------GTPEFAVPSLEALIEAGHEIVAVVTQPDKPAGRGKKLTPSPVKRLALELGIPVFQPEKLNDPEFLEE 74 (307)
T ss_pred cEEEEE-------cCchhhHHHHHHHHhCCCceEEEEeCCCCccCCCCcCCCChHHHHHHHcCCceeccccCCcHHHHHH
Confidence 577776 334333444567778999999887554321 2344567899988543211 12
Q ss_pred hhhcCccEEEEC
Q 006050 307 KTSMKADLVIAG 318 (663)
Q Consensus 307 k~~~k~DLVian 318 (663)
-...++|++++-
T Consensus 75 l~~l~~D~ivvv 86 (307)
T COG0223 75 LAALDPDLIVVV 86 (307)
T ss_pred HhccCCCEEEEE
Confidence 234578999863
No 214
>COG2327 WcaK Polysaccharide pyruvyl transferase family protein [Cell wall/membrane/envelope biogenesis]
Probab=26.02 E-value=2e+02 Score=32.58 Aligned_cols=56 Identities=23% Similarity=0.302 Sum_probs=42.9
Q ss_pred HHHHHHHhCCCCCcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 594 ILEFLSQHSNLSKAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 594 ~L~~l~~~~gLs~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
.++.++++..-+.++++..... .+-..++++|+.|-.=. ..+|=||++|+|+|+=.
T Consensus 254 va~~ia~~~~~~~~i~~~~d~~~~~~~~~l~~~dl~Vg~R~-------HsaI~al~~g~p~i~i~ 311 (385)
T COG2327 254 VADAIAQLVLDSAEILVSSDEYAEELGGILAACDLIVGMRL-------HSAIMALAFGVPAIAIA 311 (385)
T ss_pred HHHHHHhhcCCccceEeecchHHHHHHHHhccCceEEeehh-------HHHHHHHhcCCCeEEEe
Confidence 3566777776668898887766 56669999999876654 47789999999998743
No 215
>CHL00073 chlN photochlorophyllide reductase subunit N
Probab=25.91 E-value=1.7e+02 Score=33.77 Aligned_cols=82 Identities=20% Similarity=0.307 Sum_probs=50.1
Q ss_pred CCccccccccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC-CChhH----Hhc-------CCeEEE
Q 006050 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG-GLMPE----LAR-------RKIKVL 298 (663)
Q Consensus 231 ~~k~~~~~~~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G-gL~~e----L~~-------~gIkVl 298 (663)
|.=.++.....+||+. + .|.|-..+.|++.|.++|.+|..+.....+ .+.+. +.. .+..++
T Consensus 303 dal~d~~~~L~GKrva-i------~Gdp~~~i~LarfL~elGmevV~vgt~~~~~~~~~~d~~~l~~~~~~~~~~~~viv 375 (457)
T CHL00073 303 ESLKDYLDLVRGKSVF-F------MGDNLLEISLARFLIRCGMIVYEIGIPYMDKRYQAAELALLEDTCRKMNVPMPRIV 375 (457)
T ss_pred HHHHHHHHHHCCCEEE-E------ECCCcHHHHHHHHHHHCCCEEEEEEeCCCChhhhHHHHHHHHHHhhhcCCCCcEEE
Confidence 4445666667889996 3 455667889999999999999877543322 22221 222 244445
Q ss_pred eCCCCch---hhhhcCccEEEECc
Q 006050 299 EDRGEPS---FKTSMKADLVIAGS 319 (663)
Q Consensus 299 ~~~~~~s---fk~~~k~DLVianS 319 (663)
++....- +-...++||+|+|-
T Consensus 376 e~~D~~el~~~i~~~~pDLlIgG~ 399 (457)
T CHL00073 376 EKPDNYNQIQRIRELQPDLAITGM 399 (457)
T ss_pred eCCCHHHHHHHHhhCCCCEEEccc
Confidence 5432211 22456899999883
No 216
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=25.91 E-value=1.1e+02 Score=26.63 Aligned_cols=54 Identities=28% Similarity=0.316 Sum_probs=33.9
Q ss_pred HHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEE--eCC---CCc---hhhhhcCccEEEECc
Q 006050 261 MMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVL--EDR---GEP---SFKTSMKADLVIAGS 319 (663)
Q Consensus 261 mmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl--~~~---~~~---sfk~~~k~DLVianS 319 (663)
++++|+.|.+.|+++++ + +|-...|++.||++- ..+ +.. ..-...++|+||..+
T Consensus 2 ~~~~~~~l~~lG~~i~A-T----~gTa~~L~~~Gi~~~~~~~ki~~~~~~i~~~i~~g~id~VIn~~ 63 (90)
T smart00851 2 LVELAKRLAELGFELVA-T----GGTAKFLREAGLPVKTLHPKVHGGILAILDLIKNGEIDLVINTL 63 (90)
T ss_pred HHHHHHHHHHCCCEEEE-c----cHHHHHHHHCCCcceeccCCCCCCCHHHHHHhcCCCeEEEEECC
Confidence 46899999999999864 2 234667778898752 111 111 122345788888653
No 217
>PRK06194 hypothetical protein; Provisional
Probab=25.80 E-value=1.9e+02 Score=29.27 Aligned_cols=25 Identities=12% Similarity=-0.096 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHHHHHHCCCeEEEEE
Q 006050 255 TGAPLSMMELATELLSCGATVSAVV 279 (663)
Q Consensus 255 gGAp~smmeLA~~L~s~G~~V~vVv 279 (663)
||+--.-..+|+.|.++|++|.++.
T Consensus 13 GasggIG~~la~~l~~~G~~V~~~~ 37 (287)
T PRK06194 13 GAASGFGLAFARIGAALGMKLVLAD 37 (287)
T ss_pred CCccHHHHHHHHHHHHCCCEEEEEe
Confidence 4444455789999999999987653
No 218
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=25.44 E-value=1.2e+02 Score=27.35 Aligned_cols=65 Identities=9% Similarity=0.081 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHhCCCCCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHH--cCCCEEEeCCC
Q 006050 590 YVKEILEFLSQHSNLSKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMA--FGVPMLEAQKK 658 (663)
Q Consensus 590 y~k~~L~~l~~~~gLs~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA--~GlPVVatd~~ 658 (663)
.+-+.+++.+++.|++-.|.-.+ ..++.+.+..+|++++..+. .|-.--++..+ .|+||..-+..
T Consensus 18 ~l~~k~~~~~~~~gi~~~v~a~~-~~~~~~~~~~~Dvill~pqi---~~~~~~i~~~~~~~~ipv~~I~~~ 84 (95)
T TIGR00853 18 LLVNKMNKAAEEYGVPVKIAAGS-YGAAGEKLDDADVVLLAPQV---AYMLPDLKKETDKKGIPVEVINGA 84 (95)
T ss_pred HHHHHHHHHHHHCCCcEEEEEec-HHHHHhhcCCCCEEEECchH---HHHHHHHHHHhhhcCCCEEEeChh
Confidence 34556888899999975444433 33577778889999999871 22233345444 46799886643
No 219
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=25.02 E-value=1.6e+02 Score=30.73 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeC-CCCchh--hhhcCccEEEE
Q 006050 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLED-RGEPSF--KTSMKADLVIA 317 (663)
Q Consensus 260 smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~-~~~~sf--k~~~k~DLVia 317 (663)
.--.++.+..++||+|++++- ....++++ .++.++.. -.++.- ......|.||.
T Consensus 12 ~Gs~i~~EA~~RGHeVTAivR--n~~K~~~~--~~~~i~q~Difd~~~~a~~l~g~DaVIs 68 (211)
T COG2910 12 AGSRILKEALKRGHEVTAIVR--NASKLAAR--QGVTILQKDIFDLTSLASDLAGHDAVIS 68 (211)
T ss_pred hHHHHHHHHHhCCCeeEEEEe--ChHhcccc--ccceeecccccChhhhHhhhcCCceEEE
Confidence 345788899999999999983 22223222 45555431 122211 23345777764
No 220
>PF04609 MCR_C: Methyl-coenzyme M reductase operon protein C; InterPro: IPR007687 Methyl-coenzyme M reductase (MCR) catalyses the reduction of methyl-coenzyme M (CH3-SCoM) and coenzyme B (HS-CoB) to methane and the corresponding heterosulphide CoM-S-S-CoB (2.8.4.1 from EC), the final step in methane biosynthesis. This reaction proceeds under anaerobic conditions by methanogenic Archaea [], and requires a nickel-porphinoid prosthetic group, coenzyme F430, which is in the EPR-detectable Ni(I) oxidation state in the active enzyme. Studies on a catalytically inactive enzyme aerobically co-crystallized with coenzyme M displayed a fully occupied coenzyme M-binding site with no alternate conformations. The binding of coenzyme M appears to induce specific conformational changes that suggests a molecular mechanism by which the enzyme ensures that methyl-coenzyme M enters the substrate channel prior to coenzyme B, as required by the active-site geometry []. MCR is a hexamer composed of 2 alpha, 2 beta, and 2 gamma subunits with two identical nickel porphinoid active sites, which form two long active site channels with F430 embedded at the bottom [, ]. Genes encoding the beta (mcrB) and gamma (mcrG) subunits of MCR are separated by two open reading frames coding for two proteins C and D [, ]. The function of proteins C and D is unknown. This entry represents protein C.; GO: 0003824 catalytic activity, 0015948 methanogenesis
Probab=24.77 E-value=89 Score=33.63 Aligned_cols=53 Identities=13% Similarity=0.243 Sum_probs=46.5
Q ss_pred ccccccc-cCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCC
Q 006050 233 KGDFARF-VWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG 285 (663)
Q Consensus 233 k~~~~~~-~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~Gg 285 (663)
+|+|++. +.+.-|+.|..++...=-|..+.+++.+|++.|+.++.++|.++.|
T Consensus 60 ~Gt~~e~Pl~g~eV~vVamS~gr~Hl~~pvCdIt~~LRr~G~~tn~i~L~~G~G 113 (268)
T PF04609_consen 60 RGTISEAPLAGTEVAVVAMSPGRRHLPKPVCDITEYLRRAGAKTNMIGLARGSG 113 (268)
T ss_pred ccEEEEccCCCCcEEEEeCCcccccCCCcHHHHHHHHHHcCCccceEEEeccCC
Confidence 6788876 4567899999999998999999999999999999999999987654
No 221
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=24.71 E-value=1.4e+02 Score=29.30 Aligned_cols=21 Identities=29% Similarity=0.135 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHCCCeEEEEE
Q 006050 259 LSMMELATELLSCGATVSAVV 279 (663)
Q Consensus 259 ~smmeLA~~L~s~G~~V~vVv 279 (663)
-.-.++|++|.++|++|.++.
T Consensus 15 ~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 15 GIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred hHHHHHHHHHHHCCCeEEEEe
Confidence 345789999999999987654
No 222
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=24.44 E-value=77 Score=29.31 Aligned_cols=37 Identities=22% Similarity=0.228 Sum_probs=25.3
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCC
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR 283 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~ 283 (663)
|||++++.. +++-....++.+.|.+.|++|.++. ++.
T Consensus 1 k~i~l~vtG---s~~~~~~~~~l~~L~~~g~~v~vv~-S~~ 37 (129)
T PF02441_consen 1 KRILLGVTG---SIAAYKAPDLLRRLKRAGWEVRVVL-SPS 37 (129)
T ss_dssp -EEEEEE-S---SGGGGGHHHHHHHHHTTTSEEEEEE-SHH
T ss_pred CEEEEEEEC---HHHHHHHHHHHHHHhhCCCEEEEEE-CCc
Confidence 577777443 3333348899999999999999764 543
No 223
>PRK09739 hypothetical protein; Provisional
Probab=24.43 E-value=1.8e+02 Score=28.70 Aligned_cols=43 Identities=14% Similarity=0.175 Sum_probs=31.6
Q ss_pred cCCCeEEEEeCCCCCCCHHHHHHH-HHHHHHHCCCeEEEEEEcC
Q 006050 240 VWSRKFILIFHELSMTGAPLSMME-LATELLSCGATVSAVVLSK 282 (663)
Q Consensus 240 ~~~kKILLI~heLs~gGAp~smme-LA~~L~s~G~~V~vVvLs~ 282 (663)
|.++|||+|.-+...+|.-..+.+ +++++.+.|++|.++-|..
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~~ 44 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLYR 44 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 346889999777766665555554 6777888999998877654
No 224
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=24.15 E-value=2e+02 Score=33.91 Aligned_cols=69 Identities=14% Similarity=0.058 Sum_probs=40.7
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC--------CChhHHhcCCeEEEeCCCCc-----hhhhh
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG--------GLMPELARRKIKVLEDRGEP-----SFKTS 309 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G--------gL~~eL~~~gIkVl~~~~~~-----sfk~~ 309 (663)
+||+++ |.|.......+.|.+.||+|.+|+...+. .+.....+.||+++...... ..-..
T Consensus 1 mkivf~-------g~~~~a~~~l~~L~~~~~~i~~V~t~pd~~~~~~~~~~v~~~a~~~~ip~~~~~~~~~~~~~~~l~~ 73 (660)
T PRK08125 1 MKAVVF-------AYHDIGCVGIEALLAAGYEIAAVFTHTDNPGENHFFGSVARLAAELGIPVYAPEDVNHPLWVERIRE 73 (660)
T ss_pred CeEEEE-------CCCHHHHHHHHHHHHCCCcEEEEEeCCCCCcCCCCcCHHHHHHHHcCCcEEeeCCCCcHHHHHHHHh
Confidence 466665 44444455557788899999866543221 12344566899997533211 12234
Q ss_pred cCccEEEEC
Q 006050 310 MKADLVIAG 318 (663)
Q Consensus 310 ~k~DLVian 318 (663)
.++|++++-
T Consensus 74 ~~~D~iv~~ 82 (660)
T PRK08125 74 LAPDVIFSF 82 (660)
T ss_pred cCCCEEEEc
Confidence 689998753
No 225
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=23.93 E-value=1.5e+02 Score=26.49 Aligned_cols=44 Identities=18% Similarity=0.237 Sum_probs=32.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCCh
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLM 287 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~ 287 (663)
....+++++ |..|....+++.++.++++|..|.+++-.....+.
T Consensus 46 ~~~d~vi~i---S~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la 89 (128)
T cd05014 46 TPGDVVIAI---SNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLA 89 (128)
T ss_pred CCCCEEEEE---eCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence 345677774 66788888999999999999999888744333343
No 226
>PHA02518 ParA-like protein; Provisional
Probab=23.91 E-value=2.5e+02 Score=27.09 Aligned_cols=45 Identities=22% Similarity=0.192 Sum_probs=32.8
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhH
Q 006050 245 FILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPE 289 (663)
Q Consensus 245 ILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~e 289 (663)
|+-|...=...|-.....+||.+|.+.|+.|.++-+...+.+...
T Consensus 2 ii~v~~~KGGvGKTT~a~~la~~la~~g~~vlliD~D~q~~~~~~ 46 (211)
T PHA02518 2 IIAVLNQKGGAGKTTVATNLASWLHADGHKVLLVDLDPQGSSTDW 46 (211)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCChHHH
Confidence 455555544557777789999999999999998877666555443
No 227
>PRK06182 short chain dehydrogenase; Validated
Probab=23.61 E-value=2.4e+02 Score=28.39 Aligned_cols=38 Identities=26% Similarity=0.202 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEe
Q 006050 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 260 smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~ 299 (663)
.-..+|.+|.+.|++|.++. +...-.+++...++.++.
T Consensus 15 iG~~la~~l~~~G~~V~~~~--r~~~~l~~~~~~~~~~~~ 52 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAA--RRVDKMEDLASLGVHPLS 52 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEe--CCHHHHHHHHhCCCeEEE
Confidence 45678999999999987654 322212344445666553
No 228
>PLN02173 UDP-glucosyl transferase family protein
Probab=23.60 E-value=88 Score=35.53 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCcEEEcCCcchHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEE
Q 006050 605 SKAMLWTPATTRVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLE 654 (663)
Q Consensus 605 s~~V~~~G~~~dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVa 654 (663)
++++.+.+-.+... +++..+|-++-+. +=.+.++||+++|+|+|+
T Consensus 316 ~~~~~i~~W~PQ~~-iL~H~~v~~FvtH----cGwnS~~Eai~~GVP~l~ 360 (449)
T PLN02173 316 KDKSLVLKWSPQLQ-VLSNKAIGCFMTH----CGWNSTMEGLSLGVPMVA 360 (449)
T ss_pred CCceEEeCCCCHHH-HhCCCccceEEec----CccchHHHHHHcCCCEEe
No 229
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=23.24 E-value=1.6e+02 Score=30.28 Aligned_cols=70 Identities=27% Similarity=0.283 Sum_probs=38.2
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECc
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
.++++|+| ||+.. ...=|+-|.++|.+|+++...-...+.....+.+|..+....... ....+++|++-+
T Consensus 11 ~~k~Vlvv------GgG~v-a~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~--~~~~~~lviaAt 80 (210)
T COG1648 11 EGKKVLVV------GGGSV-ALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAE--DLDDAFLVIAAT 80 (210)
T ss_pred CCCEEEEE------CCCHH-HHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChh--hhcCceEEEEeC
Confidence 35677777 55543 344567889999999987643211122222345555555322222 223388887644
No 230
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=23.19 E-value=3.3e+02 Score=27.09 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEe
Q 006050 260 SMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 260 smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~ 299 (663)
.-..+|+.|.+.|++|.++. .+......++...++..+.
T Consensus 19 IG~~~a~~l~~~G~~v~~~~-~~~~~~~~~l~~~~~~~~~ 57 (255)
T PRK06463 19 IGRAIAEAFLREGAKVAVLY-NSAENEAKELREKGVFTIK 57 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEe-CCcHHHHHHHHhCCCeEEE
Confidence 44678999999999987543 3333334455545555543
No 231
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=23.17 E-value=32 Score=30.87 Aligned_cols=45 Identities=24% Similarity=0.252 Sum_probs=34.7
Q ss_pred chHHHHHH--HccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeCCCCcc
Q 006050 615 TRVASLYS--AADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQKKLLS 661 (663)
Q Consensus 615 ~dv~~lys--aADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd~~~l~ 661 (663)
+++.+++. ..||+|=..- .|...-...+|+..|+.||.++++.++
T Consensus 49 ~~~~~~~~~~~~dvvVE~t~--~~~~~~~~~~~L~~G~~VVt~nk~ala 95 (117)
T PF03447_consen 49 TDLEELIDDPDIDVVVECTS--SEAVAEYYEKALERGKHVVTANKGALA 95 (117)
T ss_dssp SSHHHHHTHTT-SEEEE-SS--CHHHHHHHHHHHHTTCEEEES-HHHHH
T ss_pred CCHHHHhcCcCCCEEEECCC--chHHHHHHHHHHHCCCeEEEECHHHhh
Confidence 45666666 8999998865 788888889999999999999988765
No 232
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=22.63 E-value=40 Score=31.58 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=15.1
Q ss_pred hhHHHHHHHHHHHHhheeE
Q 006050 67 RLVYWLLLITLWTYLGFYV 85 (663)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~ 85 (663)
-.++|+||+.-|+..+.|+
T Consensus 83 ~~LPW~LL~lSW~gF~~Y~ 101 (103)
T PF11169_consen 83 SWLPWGLLVLSWIGFIAYI 101 (103)
T ss_pred cchhHHHHHHHHHHHHHHH
Confidence 4689999999998766664
No 233
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=22.47 E-value=1.5e+02 Score=30.73 Aligned_cols=40 Identities=13% Similarity=0.016 Sum_probs=27.3
Q ss_pred cCCCeEEEEeCCCCCC-C-HHHHHHHHHHHHHHCCCeEEEEE
Q 006050 240 VWSRKFILIFHELSMT-G-APLSMMELATELLSCGATVSAVV 279 (663)
Q Consensus 240 ~~~kKILLI~heLs~g-G-Ap~smmeLA~~L~s~G~~V~vVv 279 (663)
|++++|.+++-.-+.- . ...+...++.+|.+.||+|.++.
T Consensus 2 ~~~~~v~~~~g~~~~~~~~~~~s~~~i~~al~~~g~~v~~i~ 43 (304)
T PRK01372 2 KMFGKVAVLMGGTSAEREVSLNSGAAVLAALREAGYDAHPID 43 (304)
T ss_pred CCCcEEEEEeCCCCCCceEeHHhHHHHHHHHHHCCCEEEEEe
Confidence 5678999988222211 1 12355789999999999998774
No 234
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=22.45 E-value=4.1e+02 Score=28.08 Aligned_cols=77 Identities=19% Similarity=0.281 Sum_probs=45.8
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCC--C---CChhHHhcCCeEEEeCCCC--c-h--hh----
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKR--G---GLMPELARRKIKVLEDRGE--P-S--FK---- 307 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~--G---gL~~eL~~~gIkVl~~~~~--~-s--fk---- 307 (663)
..+++.++ .....|-......||..|.+.|+.|.++..... + .+.....+.++.++..... . . +.
T Consensus 71 ~~~vi~l~-G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 71 KPNVILFV-GVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 45666665 444445556688999999999999988764421 1 1222346678887753221 1 1 11
Q ss_pred -hhcCccEEEECc
Q 006050 308 -TSMKADLVIAGS 319 (663)
Q Consensus 308 -~~~k~DLVianS 319 (663)
....+|+|+.-+
T Consensus 150 ~~~~~~D~ViIDT 162 (272)
T TIGR00064 150 AKARNIDVVLIDT 162 (272)
T ss_pred HHHCCCCEEEEeC
Confidence 124578887655
No 235
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=22.41 E-value=2.3e+02 Score=28.33 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=21.3
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVv 279 (663)
|.++|+ ||+.-.-..+|++|.+.|++|.++.
T Consensus 11 k~~lIt-----G~~~gIG~a~a~~l~~~G~~vv~~~ 41 (253)
T PRK08993 11 KVAVVT-----GCDTGLGQGMALGLAEAGCDIVGIN 41 (253)
T ss_pred CEEEEE-----CCCchHHHHHHHHHHHCCCEEEEec
Confidence 455552 3333455789999999999987653
No 236
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=22.37 E-value=1.4e+02 Score=29.15 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=28.3
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G 284 (663)
+...|+|+|+. .|-.-.+.++|..|.++|+.|.+.-+-.+.
T Consensus 13 ~~~~Vvv~~d~--~G~~~~~~~~ad~lA~~Gy~v~~pD~f~~~ 53 (218)
T PF01738_consen 13 PRPAVVVIHDI--FGLNPNIRDLADRLAEEGYVVLAPDLFGGR 53 (218)
T ss_dssp SEEEEEEE-BT--TBS-HHHHHHHHHHHHTT-EEEEE-CCCCT
T ss_pred CCCEEEEEcCC--CCCchHHHHHHHHHHhcCCCEEecccccCC
Confidence 46788888985 455577889999999999988776554433
No 237
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=22.32 E-value=1.8e+02 Score=30.24 Aligned_cols=52 Identities=17% Similarity=0.238 Sum_probs=39.6
Q ss_pred HHHHHHhCCCCCcEEEcCCcchHHHHHHH--ccEEEEcCCCCCCCCcHHHHHHHHcCCCEEE
Q 006050 595 LEFLSQHSNLSKAMLWTPATTRVASLYSA--ADVYVINSQGLGETFGRVTIEAMAFGVPMLE 654 (663)
Q Consensus 595 L~~l~~~~gLs~~V~~~G~~~dv~~lysa--ADV~V~pS~~~~E~FG~ViiEAMA~GlPVVa 654 (663)
.+.++++++++ -..++..++++. .|++++.+- ...-.-.++.|+.+|++|++
T Consensus 43 a~~~a~~~~~~------~~~~~~~~ll~~~~iD~V~Iatp--~~~H~e~~~~AL~aGkhVl~ 96 (342)
T COG0673 43 AEAFAEEFGIA------KAYTDLEELLADPDIDAVYIATP--NALHAELALAALEAGKHVLC 96 (342)
T ss_pred HHHHHHHcCCC------cccCCHHHHhcCCCCCEEEEcCC--ChhhHHHHHHHHhcCCEEEE
Confidence 77888989886 334578888887 488888875 44444456999999999986
No 238
>PRK10637 cysG siroheme synthase; Provisional
Probab=22.30 E-value=2.8e+02 Score=31.44 Aligned_cols=66 Identities=23% Similarity=0.333 Sum_probs=40.6
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHH---h-cCCeEEEeCCCCchhhhhcCccEEE
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPEL---A-RRKIKVLEDRGEPSFKTSMKADLVI 316 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL---~-~~gIkVl~~~~~~sfk~~~k~DLVi 316 (663)
..+++|+| ||++...-. +..|.++|+.|+++... +.+++ . ..+|+.+...... .....+++|+
T Consensus 11 ~~~~vlvv------GgG~vA~rk-~~~ll~~ga~v~visp~----~~~~~~~l~~~~~i~~~~~~~~~--~dl~~~~lv~ 77 (457)
T PRK10637 11 RDRDCLLV------GGGDVAERK-ARLLLDAGARLTVNALA----FIPQFTAWADAGMLTLVEGPFDE--SLLDTCWLAI 77 (457)
T ss_pred CCCEEEEE------CCCHHHHHH-HHHHHHCCCEEEEEcCC----CCHHHHHHHhCCCEEEEeCCCCh--HHhCCCEEEE
Confidence 46888887 666655444 46788899999887522 33333 2 3456666543322 2235789998
Q ss_pred ECc
Q 006050 317 AGS 319 (663)
Q Consensus 317 anS 319 (663)
+.+
T Consensus 78 ~at 80 (457)
T PRK10637 78 AAT 80 (457)
T ss_pred ECC
Confidence 765
No 239
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=22.17 E-value=2.1e+02 Score=25.49 Aligned_cols=63 Identities=25% Similarity=0.361 Sum_probs=38.4
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECc
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
.++++|+| ||++. ...=++.|.+.|++|+++... . +..+..+++...... .....+|+|++.+
T Consensus 6 ~~~~vlVv------GgG~v-a~~k~~~Ll~~gA~v~vis~~--~----~~~~~~i~~~~~~~~---~~l~~~~lV~~at 68 (103)
T PF13241_consen 6 KGKRVLVV------GGGPV-AARKARLLLEAGAKVTVISPE--I----EFSEGLIQLIRREFE---EDLDGADLVFAAT 68 (103)
T ss_dssp TT-EEEEE------EESHH-HHHHHHHHCCCTBEEEEEESS--E----HHHHTSCEEEESS-G---GGCTTESEEEE-S
T ss_pred CCCEEEEE------CCCHH-HHHHHHHHHhCCCEEEEECCc--h----hhhhhHHHHHhhhHH---HHHhhheEEEecC
Confidence 46788887 55544 346668899999999987622 1 233466666654332 2245689998765
No 240
>TIGR01082 murC UDP-N-acetylmuramate--alanine ligase. UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081.
Probab=22.04 E-value=1.3e+02 Score=33.49 Aligned_cols=58 Identities=22% Similarity=0.236 Sum_probs=36.3
Q ss_pred HHHH-HHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCCchhhhhcCccEEEECchh
Q 006050 260 SMME-LATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGEPSFKTSMKADLVIAGSAV 321 (663)
Q Consensus 260 smme-LA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~~sfk~~~k~DLVianSav 321 (663)
+-|. +|+.|.+.|++|.+.-.. ......+|...||++... ... .....+|+|+..+++
T Consensus 10 sGm~~la~~L~~~G~~v~~~D~~-~~~~~~~l~~~gi~~~~g-~~~--~~~~~~d~vV~spgi 68 (448)
T TIGR01082 10 IGMSGIAEILLNRGYQVSGSDIA-ENATTKRLEALGIPIYIG-HSA--ENLDDADVVVVSAAI 68 (448)
T ss_pred HHHHHHHHHHHHCCCeEEEECCC-cchHHHHHHHCcCEEeCC-CCH--HHCCCCCEEEECCCC
Confidence 3354 999999999998753211 112335577789988754 211 122368999987654
No 241
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=21.89 E-value=1.5e+02 Score=26.36 Aligned_cols=38 Identities=13% Similarity=0.124 Sum_probs=28.5
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEc
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLS 281 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs 281 (663)
.+..++++ +|..|-...+++.++..+++|+.|.+++-.
T Consensus 45 ~~~d~~I~---iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~ 82 (126)
T cd05008 45 DEDTLVIA---ISQSGETADTLAALRLAKEKGAKTVAITNV 82 (126)
T ss_pred CCCcEEEE---EeCCcCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 34556665 445677778899999999999999888743
No 242
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=21.88 E-value=2.3e+02 Score=28.12 Aligned_cols=56 Identities=23% Similarity=0.340 Sum_probs=36.5
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEE--EEEcCCCCChhHHhcCCeEEEe
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSA--VVLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~v--VvLs~~GgL~~eL~~~gIkVl~ 299 (663)
..+++++|-.-++ ||. ++.+.++.|.+.|++|.- +++.+..+-.+.+...|+++..
T Consensus 106 ~g~~VlIVDDvit-TG~--Tl~~~~~~l~~~Ga~vv~~~vlvdr~~~~~~~l~~~g~~v~s 163 (176)
T PRK13812 106 EGEEVVVLEDIAT-TGQ--SAVDAVEALREAGATVNRVLVVVDREEGARENLADHDVELEA 163 (176)
T ss_pred CcCEEEEEEEeeC-CCH--HHHHHHHHHHHCCCeEEEEEEEEECCcchHHHHHhcCCcEEE
Confidence 4578888766665 444 567777888889988633 2334443445666777887764
No 243
>TIGR01285 nifN nitrogenase molybdenum-iron cofactor biosynthesis protein NifN. This protein forms a complex with NifE, and appears as a NifEN in some species. NifEN is a required for producing the molybdenum-iron cofactor of molybdenum-requiring nitrogenases. NifN is closely related to the nitrogenase molybdenum-iron protein beta chain NifK. This model describes most examples of NifN but excludes some cases, such as the putative NifN of Chlorobium tepidum, for which a separate model may be created.
Probab=21.80 E-value=1.7e+02 Score=32.98 Aligned_cols=82 Identities=26% Similarity=0.291 Sum_probs=48.4
Q ss_pred CCccccccccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEeCCCC-chhhhh
Q 006050 231 DRKGDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLEDRGE-PSFKTS 309 (663)
Q Consensus 231 ~~k~~~~~~~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~~~~~-~sfk~~ 309 (663)
|.=.++.....++|+.+.. .+.....+++.|.+.|.+|.+++.........++....+ +..+... ......
T Consensus 300 ~~l~~~~~~l~Gkrvai~~-------~~~~~~~l~~~l~elGm~v~~~~~~~~~~~~~~~~~~~~-~~~D~~~l~~~i~~ 371 (432)
T TIGR01285 300 DAMLDTHFFLGGKKVAIAA-------EPDLLAAWATFFTSMGAQIVAAVTTTGSPLLQKLPVETV-VIGDLEDLEDLACA 371 (432)
T ss_pred HHHHHHHHhhCCCEEEEEc-------CHHHHHHHHHHHHHCCCEEEEEEeCCCCHHHHhCCcCcE-EeCCHHHHHHHHhh
Confidence 3344555566688887652 334678899999999999988876655444433322222 2222111 111233
Q ss_pred cCccEEEECch
Q 006050 310 MKADLVIAGSA 320 (663)
Q Consensus 310 ~k~DLVianSa 320 (663)
.++|+++.++.
T Consensus 372 ~~~dliig~s~ 382 (432)
T TIGR01285 372 AGADLLITNSH 382 (432)
T ss_pred cCCCEEEECcc
Confidence 57999999873
No 244
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.72 E-value=1.3e+02 Score=26.56 Aligned_cols=36 Identities=19% Similarity=0.270 Sum_probs=28.9
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVV 279 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVv 279 (663)
.+..+++++. ..|....++++++.+++.|..|.+++
T Consensus 52 ~~~d~vi~is---~sg~~~~~~~~~~~ak~~g~~vi~iT 87 (131)
T PF01380_consen 52 DPDDLVIIIS---YSGETRELIELLRFAKERGAPVILIT 87 (131)
T ss_dssp STTEEEEEEE---SSSTTHHHHHHHHHHHHTTSEEEEEE
T ss_pred cccceeEeee---ccccchhhhhhhHHHHhcCCeEEEEe
Confidence 4556777744 67888899999999999999997766
No 245
>PRK05993 short chain dehydrogenase; Provisional
Probab=21.65 E-value=1.9e+02 Score=29.40 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=30.5
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcCCeEEEe
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARRKIKVLE 299 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~gIkVl~ 299 (663)
.|.++|+ ||+.-.-..+|+.|.+.|++|.++. +...-.+++...++.++.
T Consensus 4 ~k~vlIt-----GasggiG~~la~~l~~~G~~Vi~~~--r~~~~~~~l~~~~~~~~~ 53 (277)
T PRK05993 4 KRSILIT-----GCSSGIGAYCARALQSDGWRVFATC--RKEEDVAALEAEGLEAFQ 53 (277)
T ss_pred CCEEEEe-----CCCcHHHHHHHHHHHHCCCEEEEEE--CCHHHHHHHHHCCceEEE
Confidence 4455553 3333345678999999999987654 333334456556766654
No 246
>PRK00207 sulfur transfer complex subunit TusD; Validated
Probab=21.47 E-value=1.7e+02 Score=27.64 Aligned_cols=37 Identities=16% Similarity=0.220 Sum_probs=28.3
Q ss_pred CeEEEEeCCCCCCCH-HHHHHHHHHHHHHCCCeE-EEEE
Q 006050 243 RKFILIFHELSMTGA-PLSMMELATELLSCGATV-SAVV 279 (663)
Q Consensus 243 kKILLI~heLs~gGA-p~smmeLA~~L~s~G~~V-~vVv 279 (663)
|||++|++.--.++. .+..+++|..+...||+| .++.
T Consensus 1 m~~~iv~~~~Py~~~~~~~al~~A~aa~~~gh~v~~vFf 39 (128)
T PRK00207 1 MRYAIAVTGPAYGTQQASSAYQFAQALLAEGHELVSVFF 39 (128)
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHHHHhCCCCeeEEEE
Confidence 578899888766433 357899999999999995 5543
No 247
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=21.35 E-value=2.1e+02 Score=32.58 Aligned_cols=80 Identities=18% Similarity=0.280 Sum_probs=47.2
Q ss_pred cccccccCCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCC-Chh---HHhcCCeEEEeCCCCchh---
Q 006050 234 GDFARFVWSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGG-LMP---ELARRKIKVLEDRGEPSF--- 306 (663)
Q Consensus 234 ~~~~~~~~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~Gg-L~~---eL~~~gIkVl~~~~~~sf--- 306 (663)
.++.....++|+.+. +|+ -....+++.|.+.|.+|..+....... ..+ .+...+..++.+.....+
T Consensus 316 ~~~~~~l~Gk~vaI~------~~~-~~~~~la~~l~ElGm~v~~~~~~~~~~~~~~~l~~~~~~~~~v~~d~~~~e~~~~ 388 (475)
T PRK14478 316 EPYRPRLEGKRVLLY------TGG-VKSWSVVKALQELGMEVVGTSVKKSTDEDKERIKELMGPDAHMIDDANPRELYKM 388 (475)
T ss_pred HHHHHHhCCCEEEEE------cCC-chHHHHHHHHHHCCCEEEEEEEECCCHHHHHHHHHHcCCCcEEEeCCCHHHHHHH
Confidence 455666678888663 222 355678888999999998776543221 111 222235555555322222
Q ss_pred hhhcCccEEEECch
Q 006050 307 KTSMKADLVIAGSA 320 (663)
Q Consensus 307 k~~~k~DLVianSa 320 (663)
-...++|+++.++.
T Consensus 389 i~~~~pDliig~s~ 402 (475)
T PRK14478 389 LKEAKADIMLSGGR 402 (475)
T ss_pred HhhcCCCEEEecCc
Confidence 13457999999863
No 248
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=21.30 E-value=1.1e+02 Score=34.99 Aligned_cols=37 Identities=22% Similarity=0.358 Sum_probs=29.4
Q ss_pred eEEEEeCCCCCCCH-------HHHHHHHHHHHHHCC-CeEEEEEE
Q 006050 244 KFILIFHELSMTGA-------PLSMMELATELLSCG-ATVSAVVL 280 (663)
Q Consensus 244 KILLI~heLs~gGA-------p~smmeLA~~L~s~G-~~V~vVvL 280 (663)
|||||.+....+|+ |+.+.-||..|.+.| |+|.++-.
T Consensus 1 ~illi~P~~~~~~~~~~~~~pPlgl~~lAa~L~~~G~~~V~iiD~ 45 (497)
T TIGR02026 1 RILILNPNYHAGGAEIAGQWPPLWVAYIGGALLDAGYHDVTFLDA 45 (497)
T ss_pred CeEEEcCCCCccccccCCCcCCHHHHHHHHHHHhcCCcceEEecc
Confidence 68888877665554 677889999999999 89988743
No 249
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=21.22 E-value=1.9e+02 Score=28.93 Aligned_cols=31 Identities=23% Similarity=0.144 Sum_probs=21.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAV 278 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vV 278 (663)
.|.++|+ ||+.-.-..+|+.|.+.|++|.++
T Consensus 8 ~k~~lIt-----Gas~gIG~aia~~l~~~G~~vv~~ 38 (251)
T PRK12481 8 GKVAIIT-----GCNTGLGQGMAIGLAKAGADIVGV 38 (251)
T ss_pred CCEEEEe-----CCCchHHHHHHHHHHHCCCEEEEe
Confidence 3555562 333334578999999999998664
No 250
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=21.18 E-value=3.7e+02 Score=23.06 Aligned_cols=38 Identities=11% Similarity=-0.013 Sum_probs=29.3
Q ss_pred EEEEeCCCCCC-CHHHHHHHHHHHHHHC--CCeEEEEEEcC
Q 006050 245 FILIFHELSMT-GAPLSMMELATELLSC--GATVSAVVLSK 282 (663)
Q Consensus 245 ILLI~heLs~g-GAp~smmeLA~~L~s~--G~~V~vVvLs~ 282 (663)
+|++.|..... .....+.+++..|.+. +..|.+...+.
T Consensus 2 lllv~HGs~~~s~~~~~~~~~~~~l~~~~~~~~v~~a~~~~ 42 (101)
T cd03409 2 LLVVGHGSPYKDPYKKDIEAQAHNLAESLPDFPYYVGFQSG 42 (101)
T ss_pred EEEEECCCCCCccHHHHHHHHHHHHHHHCCCCCEEEEEECC
Confidence 78999998876 7777888899999775 46777666555
No 251
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=21.11 E-value=2e+02 Score=28.52 Aligned_cols=42 Identities=26% Similarity=0.201 Sum_probs=32.0
Q ss_pred CeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCC
Q 006050 243 RKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRG 284 (663)
Q Consensus 243 kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~G 284 (663)
+|++.|+..-...|-....++||..|++.|+.|.++-+...+
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~~g~~VlliD~D~q~ 42 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKLLGEPVLAIDLDPQN 42 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 356666665555677778899999999999999888765543
No 252
>PRK06128 oxidoreductase; Provisional
Probab=21.02 E-value=3.7e+02 Score=27.77 Aligned_cols=21 Identities=19% Similarity=0.063 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHCCCeEEEEEE
Q 006050 260 SMMELATELLSCGATVSAVVL 280 (663)
Q Consensus 260 smmeLA~~L~s~G~~V~vVvL 280 (663)
.-..+|..|.+.|++|.++..
T Consensus 67 IG~~~a~~l~~~G~~V~i~~~ 87 (300)
T PRK06128 67 IGRATAIAFAREGADIALNYL 87 (300)
T ss_pred HHHHHHHHHHHcCCEEEEEeC
Confidence 446789999999999876543
No 253
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=20.69 E-value=2.4e+02 Score=31.94 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=39.3
Q ss_pred CCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcC--CeEEEeCCCCchhhhhcCccEEEECc
Q 006050 242 SRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLSKRGGLMPELARR--KIKVLEDRGEPSFKTSMKADLVIAGS 319 (663)
Q Consensus 242 ~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~--gIkVl~~~~~~sfk~~~k~DLVianS 319 (663)
.++|+++ ..||.- |.+|+.|.+.|+.|.+.-.........+|... |+++........ ....+|+|+..+
T Consensus 7 ~~~i~v~----G~G~sG---~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~--~~~~~d~vv~sp 77 (498)
T PRK02006 7 GPMVLVL----GLGESG---LAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPA--LLDGVDLVALSP 77 (498)
T ss_pred CCEEEEE----eecHhH---HHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchh--HhcCCCEEEECC
Confidence 4566555 345544 34899999999998754311111122446555 555543211111 123689999876
Q ss_pred hh
Q 006050 320 AV 321 (663)
Q Consensus 320 av 321 (663)
++
T Consensus 78 ~I 79 (498)
T PRK02006 78 GL 79 (498)
T ss_pred CC
Confidence 54
No 254
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=20.34 E-value=6.7e+02 Score=26.54 Aligned_cols=57 Identities=16% Similarity=0.261 Sum_probs=35.2
Q ss_pred HHHHHHHHHHCCCeEEEEEEcCCCCChhHHhcC-CeEEEeCCCCc----hhhhhcCccEEEECc
Q 006050 261 MMELATELLSCGATVSAVVLSKRGGLMPELARR-KIKVLEDRGEP----SFKTSMKADLVIAGS 319 (663)
Q Consensus 261 mmeLA~~L~s~G~~V~vVvLs~~GgL~~eL~~~-gIkVl~~~~~~----sfk~~~k~DLVianS 319 (663)
--.||..|.+.||+|.+.+.+..+. +.+... +++|+....+. .+-...++|+|+--+
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~--~~~~~~g~~~v~~g~l~~~~l~~~l~~~~i~~VIDAt 73 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGK--HLYPIHQALTVHTGALDPQELREFLKRHSIDILVDAT 73 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCcc--ccccccCCceEEECCCCHHHHHHHHHhcCCCEEEEcC
Confidence 6788999999999998877554432 223333 45666544321 233456789887543
No 255
>PRK11914 diacylglycerol kinase; Reviewed
Probab=20.21 E-value=2.1e+02 Score=30.08 Aligned_cols=43 Identities=23% Similarity=0.192 Sum_probs=32.3
Q ss_pred cCCCeEEEEeCCCCCCCH-HHHHHHHHHHHHHCCCeEEEEEEcC
Q 006050 240 VWSRKFILIFHELSMTGA-PLSMMELATELLSCGATVSAVVLSK 282 (663)
Q Consensus 240 ~~~kKILLI~heLs~gGA-p~smmeLA~~L~s~G~~V~vVvLs~ 282 (663)
|..+|+++|.+..+.+|. ...+-++...|.+.|+++.++....
T Consensus 6 ~~~~~~~iI~NP~sG~g~~~~~~~~~~~~l~~~g~~~~~~~t~~ 49 (306)
T PRK11914 6 HEIGKVTVLTNPLSGHGAAPHAAERAIARLHHRGVDVVEIVGTD 49 (306)
T ss_pred CCCceEEEEECCCCCCCcHHHHHHHHHHHHHHcCCeEEEEEeCC
Confidence 445889999998886554 4556678889999999987765444
No 256
>PLN00414 glycosyltransferase family protein
Probab=20.19 E-value=1.9e+02 Score=32.72 Aligned_cols=40 Identities=18% Similarity=0.226 Sum_probs=30.3
Q ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHHHHHHCCCeEEEEEEc
Q 006050 241 WSRKFILIFHELSMTGAPLSMMELATELLSCGATVSAVVLS 281 (663)
Q Consensus 241 ~~kKILLI~heLs~gGAp~smmeLA~~L~s~G~~V~vVvLs 281 (663)
.++.-+++++-.. .|--.-|++||+.|.++|++|++++..
T Consensus 2 ~~~~HVvlvPfpa-qGHi~PmL~LAk~Las~G~~VT~vtt~ 41 (446)
T PLN00414 2 GSKFHAFMYPWFG-FGHMIPYLHLANKLAEKGHRVTFFLPK 41 (446)
T ss_pred CCCCEEEEecCcc-cchHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 3444456666653 477778999999999999999998744
No 257
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.19 E-value=4.7e+02 Score=32.08 Aligned_cols=59 Identities=20% Similarity=0.330 Sum_probs=41.9
Q ss_pred HHHHHHhCCCC-CcEEEcCCcc--hHHHHHHHccEEEEcCCCCCCCCcHHHHHHHHcCCCEEEeC
Q 006050 595 LEFLSQHSNLS-KAMLWTPATT--RVASLYSAADVYVINSQGLGETFGRVTIEAMAFGVPMLEAQ 656 (663)
Q Consensus 595 L~~l~~~~gLs-~~V~~~G~~~--dv~~lysaADV~V~pS~~~~E~FG~ViiEAMA~GlPVVatd 656 (663)
++..+++.||+ ++|.|++-.. +-..-++.|||.+=+..--+-|-| .|-+-+|+|+|.-.
T Consensus 804 f~ty~~~~Gl~p~riifs~va~k~eHvrr~~LaDv~LDTplcnGhTTg---~dvLw~GvPmVTmp 865 (966)
T KOG4626|consen 804 FRTYAEQLGLEPDRIIFSPVAAKEEHVRRGQLADVCLDTPLCNGHTTG---MDVLWAGVPMVTMP 865 (966)
T ss_pred HHHHHHHhCCCccceeeccccchHHHHHhhhhhhhcccCcCcCCcccc---hhhhccCCceeecc
Confidence 66677778884 7888887543 556678889998876652233433 67789999999754
No 258
>PLN03004 UDP-glycosyltransferase
Probab=20.05 E-value=85 Score=35.67 Aligned_cols=37 Identities=22% Similarity=0.421 Sum_probs=25.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHHHHHHHHCC--CeEEEEEEc
Q 006050 244 KFILIFHELSMTGAPLSMMELATELLSCG--ATVSAVVLS 281 (663)
Q Consensus 244 KILLI~heLs~gGAp~smmeLA~~L~s~G--~~V~vVvLs 281 (663)
+-+++++-.. -|--.-|++||+.|.++| +.|++++.+
T Consensus 4 ~Hvvl~P~p~-qGHi~P~l~LA~~La~~g~~~~vti~~~~ 42 (451)
T PLN03004 4 EAIVLYPAPP-IGHLVSMVELGKTILSKNPSLSIHIILVP 42 (451)
T ss_pred cEEEEeCCcc-cchHHHHHHHHHHHHhCCCceEEEEEEec
Confidence 3455556654 477778999999999998 556655444
Done!