Query 006051
Match_columns 663
No_of_seqs 409 out of 4098
Neff 8.5
Searched_HMMs 46136
Date Thu Mar 28 17:39:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006051.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006051hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0480 DNA replication licens 100.0 9E-109 2E-113 866.0 43.5 578 11-615 27-650 (764)
2 COG1241 MCM2 Predicted ATPase 100.0 8E-106 2E-110 882.4 50.1 561 39-622 32-606 (682)
3 KOG0481 DNA replication licens 100.0 2E-105 5E-110 818.8 46.5 622 6-650 25-680 (729)
4 KOG0479 DNA replication licens 100.0 7E-103 2E-107 810.8 45.3 586 6-614 10-648 (818)
5 PTZ00111 DNA replication licen 100.0 5E-101 1E-105 861.4 56.9 621 7-648 86-848 (915)
6 KOG0478 DNA replication licens 100.0 9E-102 2E-106 819.2 35.8 586 5-623 129-739 (804)
7 KOG0482 DNA replication licens 100.0 9E-102 2E-106 791.5 31.1 587 5-614 9-644 (721)
8 KOG0477 DNA replication licens 100.0 1E-100 2E-105 799.8 33.0 598 8-634 160-782 (854)
9 smart00350 MCM minichromosome 100.0 3.3E-88 7.2E-93 748.6 47.2 488 114-612 3-508 (509)
10 PF00493 MCM: MCM2/3/5 family 100.0 5E-65 1.1E-69 533.8 7.5 311 303-613 13-331 (331)
11 TIGR00368 Mg chelatase-related 99.9 6.6E-27 1.4E-31 255.8 13.9 260 315-607 193-498 (499)
12 COG0606 Predicted ATPase with 99.9 1E-26 2.2E-31 242.9 10.1 262 313-607 178-484 (490)
13 PRK09862 putative ATP-dependen 99.9 4E-26 8.7E-31 248.1 11.5 260 315-608 192-492 (506)
14 TIGR02442 Cob-chelat-sub cobal 99.9 7.4E-25 1.6E-29 248.9 19.2 261 313-609 3-305 (633)
15 PRK13407 bchI magnesium chelat 99.9 2.1E-24 4.6E-29 224.5 20.1 261 314-608 8-306 (334)
16 PF01078 Mg_chelatase: Magnesi 99.9 3.4E-25 7.4E-30 211.6 10.1 165 314-493 3-201 (206)
17 CHL00081 chlI Mg-protoporyphyr 99.9 3.6E-24 7.7E-29 222.9 18.6 260 314-608 17-322 (350)
18 TIGR02031 BchD-ChlD magnesium 99.9 6E-24 1.3E-28 238.6 20.6 252 320-609 1-259 (589)
19 TIGR02030 BchI-ChlI magnesium 99.9 6.1E-24 1.3E-28 221.6 19.2 259 314-608 4-309 (337)
20 COG1239 ChlI Mg-chelatase subu 99.9 5E-21 1.1E-25 198.0 18.0 252 312-608 15-322 (423)
21 PRK13531 regulatory ATPase Rav 99.9 2.6E-20 5.6E-25 198.9 22.8 271 306-615 12-291 (498)
22 COG3829 RocR Transcriptional r 99.9 1E-21 2.2E-26 208.2 10.9 230 311-602 242-491 (560)
23 PRK13406 bchD magnesium chelat 99.8 2.8E-20 6.1E-25 206.9 17.7 237 319-609 8-251 (584)
24 COG3604 FhlA Transcriptional r 99.8 4.9E-21 1.1E-25 200.1 10.3 203 346-601 245-465 (550)
25 COG2204 AtoC Response regulato 99.8 5E-21 1.1E-25 203.8 9.1 231 311-603 138-386 (464)
26 COG3283 TyrR Transcriptional r 99.8 2E-20 4.3E-25 186.8 10.9 246 348-663 228-487 (511)
27 COG0714 MoxR-like ATPases [Gen 99.8 2.6E-18 5.6E-23 181.6 18.7 277 306-611 16-299 (329)
28 TIGR00764 lon_rel lon-related 99.8 8.3E-18 1.8E-22 189.4 19.5 174 400-612 208-395 (608)
29 PF05496 RuvB_N: Holliday junc 99.8 1.5E-18 3.3E-23 166.8 11.6 203 312-589 22-230 (233)
30 TIGR02902 spore_lonB ATP-depen 99.7 5.2E-17 1.1E-21 181.1 20.8 225 313-606 64-330 (531)
31 COG2255 RuvB Holliday junction 99.7 3.9E-17 8.5E-22 159.6 17.2 216 314-608 26-251 (332)
32 TIGR01650 PD_CobS cobaltochela 99.7 2.5E-16 5.5E-21 161.6 19.8 208 348-587 65-283 (327)
33 TIGR02974 phageshock_pspF psp 99.7 1.2E-16 2.7E-21 167.7 14.2 201 347-588 22-233 (329)
34 TIGR02640 gas_vesic_GvpN gas v 99.7 4.5E-16 9.7E-21 158.9 17.1 207 348-604 22-253 (262)
35 PRK15424 propionate catabolism 99.7 3.1E-16 6.8E-21 173.1 14.6 210 347-601 242-478 (538)
36 TIGR02880 cbbX_cfxQ probable R 99.7 2.3E-16 4.9E-21 162.6 12.0 224 308-593 16-258 (284)
37 PF07726 AAA_3: ATPase family 99.7 1.2E-16 2.5E-21 140.4 7.3 126 349-486 1-130 (131)
38 COG1221 PspF Transcriptional r 99.7 2.5E-16 5.5E-21 165.2 11.0 197 348-591 102-312 (403)
39 CHL00181 cbbX CbbX; Provisiona 99.7 3.8E-16 8.3E-21 160.7 12.1 218 306-588 15-254 (287)
40 COG1222 RPT1 ATP-dependent 26S 99.7 9.4E-16 2E-20 154.6 13.1 217 321-610 162-394 (406)
41 TIGR02329 propionate_PrpR prop 99.6 8.7E-16 1.9E-20 169.8 13.4 211 347-602 235-464 (526)
42 PRK10820 DNA-binding transcrip 99.6 5.9E-16 1.3E-20 172.7 11.0 238 347-648 227-482 (520)
43 PRK11608 pspF phage shock prot 99.6 7.8E-16 1.7E-20 161.9 10.9 202 347-589 29-241 (326)
44 PRK05022 anaerobic nitric oxid 99.6 1.9E-15 4.2E-20 168.6 12.2 236 314-601 187-436 (509)
45 PRK11388 DNA-binding transcrip 99.6 2E-15 4.3E-20 173.7 11.8 206 347-605 348-568 (638)
46 PRK13765 ATP-dependent proteas 99.6 1.1E-14 2.4E-19 163.5 17.3 165 401-606 218-398 (637)
47 PRK00080 ruvB Holliday junctio 99.6 2E-14 4.3E-19 152.0 18.4 224 313-611 24-253 (328)
48 COG2256 MGS1 ATPase related to 99.6 1.4E-14 3E-19 148.6 16.1 172 348-589 49-221 (436)
49 TIGR01817 nifA Nif-specific re 99.6 4.5E-15 9.7E-20 167.2 12.4 210 347-602 219-439 (534)
50 COG1223 Predicted ATPase (AAA+ 99.6 3.9E-15 8.4E-20 143.4 9.8 224 310-607 117-354 (368)
51 KOG0738 AAA+-type ATPase [Post 99.6 8.4E-15 1.8E-19 148.6 12.5 243 314-613 212-474 (491)
52 KOG0736 Peroxisome assembly fa 99.6 1.8E-14 3.8E-19 157.2 15.8 247 315-614 673-938 (953)
53 TIGR00635 ruvB Holliday juncti 99.6 4.1E-14 8.8E-19 148.4 17.9 220 314-608 4-229 (305)
54 PRK05342 clpX ATP-dependent pr 99.6 7.2E-15 1.6E-19 157.8 11.8 226 312-557 69-356 (412)
55 PF07728 AAA_5: AAA domain (dy 99.6 2.9E-15 6.4E-20 138.0 6.6 129 349-485 1-139 (139)
56 KOG0734 AAA+-type ATPase conta 99.6 6.6E-15 1.4E-19 154.3 9.8 228 311-606 301-539 (752)
57 TIGR02881 spore_V_K stage V sp 99.6 2.7E-14 5.9E-19 145.9 13.9 216 315-591 7-241 (261)
58 PRK15429 formate hydrogenlyase 99.5 3.9E-14 8.5E-19 164.0 15.1 218 313-589 375-610 (686)
59 COG3284 AcoR Transcriptional a 99.5 1.3E-14 2.7E-19 157.3 8.3 198 346-601 335-550 (606)
60 KOG0730 AAA+-type ATPase [Post 99.5 7.5E-14 1.6E-18 150.9 13.3 160 313-501 433-608 (693)
61 TIGR00382 clpX endopeptidase C 99.5 3.4E-14 7.4E-19 151.6 10.3 247 308-584 71-380 (413)
62 TIGR02915 PEP_resp_reg putativ 99.5 3.2E-14 7E-19 157.2 10.0 203 347-601 162-382 (445)
63 PF00158 Sigma54_activat: Sigm 99.5 8.1E-15 1.8E-19 138.7 3.9 114 347-462 22-144 (168)
64 KOG0737 AAA+-type ATPase [Post 99.5 6.6E-14 1.4E-18 142.3 10.6 202 313-538 91-307 (386)
65 CHL00195 ycf46 Ycf46; Provisio 99.5 1E-13 2.2E-18 151.8 12.9 221 313-611 227-466 (489)
66 PRK15115 response regulator Gl 99.5 7.8E-14 1.7E-18 154.1 11.4 204 347-603 157-379 (444)
67 PRK10923 glnG nitrogen regulat 99.5 6.7E-14 1.5E-18 155.7 10.6 213 347-604 161-384 (469)
68 COG0466 Lon ATP-dependent Lon 99.5 1.7E-13 3.7E-18 149.5 12.8 205 311-559 320-538 (782)
69 PRK03992 proteasome-activating 99.5 2.2E-13 4.8E-18 146.7 13.5 231 315-615 132-379 (389)
70 PF14551 MCM_N: MCM N-terminal 99.5 2.7E-14 5.8E-19 128.2 4.9 111 11-132 3-121 (121)
71 KOG0733 Nuclear AAA ATPase (VC 99.5 6.6E-13 1.4E-17 141.7 16.1 159 316-509 513-693 (802)
72 PRK11034 clpA ATP-dependent Cl 99.5 5.1E-13 1.1E-17 153.4 14.9 224 306-557 450-693 (758)
73 PRK10787 DNA-binding ATP-depen 99.5 5.1E-13 1.1E-17 154.5 14.5 175 311-508 319-507 (784)
74 PRK11361 acetoacetate metaboli 99.4 3.9E-13 8.4E-18 149.2 11.6 213 348-605 167-390 (457)
75 TIGR02903 spore_lon_C ATP-depe 99.4 1.6E-12 3.5E-17 147.4 16.5 155 310-488 150-348 (615)
76 PTZ00454 26S protease regulato 99.4 1.4E-12 3.1E-17 139.8 14.8 227 315-610 146-388 (398)
77 KOG0733 Nuclear AAA ATPase (VC 99.4 4.8E-13 1E-17 142.7 10.9 180 313-509 189-375 (802)
78 PHA02244 ATPase-like protein 99.4 8.7E-13 1.9E-17 136.9 12.3 136 348-491 120-258 (383)
79 KOG0652 26S proteasome regulat 99.4 8.9E-13 1.9E-17 127.1 11.1 223 315-610 172-414 (424)
80 TIGR00763 lon ATP-dependent pr 99.4 1.2E-12 2.6E-17 153.0 14.5 178 308-507 314-505 (775)
81 TIGR01818 ntrC nitrogen regula 99.4 8.8E-13 1.9E-17 146.6 12.7 214 347-605 157-381 (463)
82 PRK14962 DNA polymerase III su 99.4 3E-12 6.4E-17 140.2 15.6 219 292-607 3-241 (472)
83 KOG0989 Replication factor C, 99.4 2.3E-11 5E-16 120.8 19.4 134 315-487 37-182 (346)
84 TIGR02639 ClpA ATP-dependent C 99.4 2.8E-12 6.1E-17 149.1 15.4 224 306-557 446-689 (731)
85 TIGR01241 FtsH_fam ATP-depende 99.4 1.1E-12 2.3E-17 146.3 11.3 160 314-505 55-235 (495)
86 KOG0739 AAA+-type ATPase [Post 99.4 6.3E-13 1.4E-17 130.5 7.9 168 315-513 134-313 (439)
87 CHL00176 ftsH cell division pr 99.4 1.3E-12 2.9E-17 147.4 11.8 162 313-501 182-359 (638)
88 TIGR01242 26Sp45 26S proteasom 99.4 2.7E-12 5.9E-17 137.7 13.5 224 315-608 123-363 (364)
89 PRK14956 DNA polymerase III su 99.4 1.4E-11 2.9E-16 133.0 18.5 209 314-607 18-245 (484)
90 COG0542 clpA ATP-binding subun 99.4 1.9E-12 4.2E-17 145.5 11.7 223 307-557 484-732 (786)
91 KOG2004 Mitochondrial ATP-depe 99.4 2.9E-12 6.4E-17 139.1 12.5 175 312-508 409-597 (906)
92 PTZ00361 26 proteosome regulat 99.4 3.3E-12 7.1E-17 137.9 12.6 228 315-612 184-428 (438)
93 TIGR03346 chaperone_ClpB ATP-d 99.4 9.2E-12 2E-16 146.9 16.7 239 307-584 558-821 (852)
94 PRK07003 DNA polymerase III su 99.4 2.9E-11 6.2E-16 135.1 19.2 220 292-607 5-243 (830)
95 PRK13342 recombination factor 99.4 2.6E-11 5.7E-16 132.1 18.6 202 315-607 13-218 (413)
96 PRK13341 recombination factor 99.3 3E-11 6.6E-16 138.2 18.9 211 314-605 28-244 (725)
97 PRK10365 transcriptional regul 99.3 3.7E-12 8E-17 140.7 11.0 213 347-604 162-385 (441)
98 COG0464 SpoVK ATPases of the A 99.3 6.7E-12 1.5E-16 140.3 12.5 227 315-611 243-486 (494)
99 PRK14958 DNA polymerase III su 99.3 9.1E-11 2E-15 130.0 20.8 208 315-607 17-243 (509)
100 KOG0731 AAA+-type ATPase conta 99.3 9.9E-12 2.1E-16 138.8 13.1 156 313-497 310-484 (774)
101 CHL00095 clpC Clp protease ATP 99.3 2.4E-11 5.3E-16 142.9 16.7 250 280-557 470-759 (821)
102 PRK14949 DNA polymerase III su 99.3 6E-11 1.3E-15 135.0 18.8 187 315-583 17-223 (944)
103 PRK14960 DNA polymerase III su 99.3 4.6E-11 1E-15 132.2 17.4 205 315-604 16-239 (702)
104 KOG0727 26S proteasome regulat 99.3 1.5E-11 3.3E-16 118.2 11.1 213 321-606 166-394 (408)
105 TIGR02639 ClpA ATP-dependent C 99.3 3.2E-11 7E-16 140.3 16.0 201 312-560 180-404 (731)
106 TIGR03345 VI_ClpV1 type VI sec 99.3 3.4E-11 7.3E-16 141.1 16.0 277 282-596 529-840 (852)
107 PRK14961 DNA polymerase III su 99.3 1.6E-10 3.4E-15 123.8 19.7 140 315-491 17-175 (363)
108 TIGR01243 CDC48 AAA family ATP 99.3 9.7E-12 2.1E-16 145.1 11.3 160 314-503 453-630 (733)
109 CHL00206 ycf2 Ycf2; Provisiona 99.3 2.1E-11 4.6E-16 145.5 13.7 201 345-608 1628-1877(2281)
110 PLN03025 replication factor C 99.3 2.6E-10 5.6E-15 120.2 20.6 138 315-494 14-158 (319)
111 PRK08691 DNA polymerase III su 99.3 3.5E-10 7.5E-15 126.5 22.4 209 315-608 17-244 (709)
112 PRK12323 DNA polymerase III su 99.3 1.1E-10 2.3E-15 129.1 18.0 142 315-493 17-182 (700)
113 COG0465 HflB ATP-dependent Zn 99.3 1.6E-11 3.4E-16 134.9 10.9 153 312-496 148-321 (596)
114 PF07724 AAA_2: AAA domain (Cd 99.3 1.7E-12 3.7E-17 123.2 2.5 114 346-462 2-130 (171)
115 PRK10865 protein disaggregatio 99.3 6.8E-11 1.5E-15 139.0 16.3 266 281-583 530-823 (857)
116 PRK14964 DNA polymerase III su 99.2 2.1E-10 4.6E-15 125.2 17.9 208 314-606 13-239 (491)
117 COG1224 TIP49 DNA helicase TIP 99.2 2.5E-10 5.4E-15 115.3 16.6 151 410-619 292-443 (450)
118 PRK05201 hslU ATP-dependent pr 99.2 9.5E-11 2.1E-15 123.6 13.9 146 409-589 249-407 (443)
119 COG1219 ClpX ATP-dependent pro 99.2 1.8E-11 3.8E-16 121.8 7.7 155 307-461 54-228 (408)
120 TIGR03689 pup_AAA proteasome A 99.2 1.3E-11 2.9E-16 135.0 7.4 165 315-506 183-376 (512)
121 PRK14957 DNA polymerase III su 99.2 3.2E-10 6.9E-15 125.6 17.9 206 315-605 17-241 (546)
122 PRK06645 DNA polymerase III su 99.2 5.4E-10 1.2E-14 123.0 19.4 211 314-606 21-254 (507)
123 PRK07994 DNA polymerase III su 99.2 4.3E-10 9.4E-15 126.3 18.3 144 314-495 16-179 (647)
124 PRK05896 DNA polymerase III su 99.2 7.7E-10 1.7E-14 122.6 19.9 140 315-491 17-175 (605)
125 KOG0735 AAA+-type ATPase [Post 99.2 1.2E-10 2.6E-15 126.6 13.0 197 314-538 667-881 (952)
126 PRK10733 hflB ATP-dependent me 99.2 7.6E-11 1.7E-15 134.8 12.0 188 348-608 186-392 (644)
127 KOG2028 ATPase related to the 99.2 4E-11 8.7E-16 121.0 8.4 150 315-508 139-295 (554)
128 PLN00020 ribulose bisphosphate 99.2 4.5E-11 9.7E-16 123.1 8.9 146 344-505 145-308 (413)
129 TIGR00390 hslU ATP-dependent p 99.2 4.6E-10 1E-14 118.4 15.8 148 408-590 246-406 (441)
130 TIGR03345 VI_ClpV1 type VI sec 99.2 2.5E-10 5.3E-15 134.0 15.2 204 312-563 185-412 (852)
131 PRK08451 DNA polymerase III su 99.2 9.5E-10 2.1E-14 121.2 18.7 140 315-491 15-173 (535)
132 PF00004 AAA: ATPase family as 99.2 1.8E-11 3.9E-16 111.2 4.1 114 350-491 1-130 (132)
133 PRK11034 clpA ATP-dependent Cl 99.2 3.5E-10 7.6E-15 130.2 15.4 201 314-562 186-410 (758)
134 PRK14963 DNA polymerase III su 99.2 1.2E-09 2.5E-14 120.9 18.8 216 292-605 3-237 (504)
135 PRK14959 DNA polymerase III su 99.2 1.4E-09 2.9E-14 121.3 19.1 206 315-605 17-241 (624)
136 PRK14955 DNA polymerase III su 99.2 1.1E-09 2.3E-14 118.7 17.8 210 315-605 17-254 (397)
137 PRK05563 DNA polymerase III su 99.1 1.1E-09 2.3E-14 123.2 18.2 219 291-605 4-241 (559)
138 PRK14969 DNA polymerase III su 99.1 2.4E-09 5.3E-14 119.4 19.6 144 315-495 17-179 (527)
139 PRK14951 DNA polymerase III su 99.1 1.3E-09 2.7E-14 122.4 17.2 144 315-495 17-184 (618)
140 KOG0726 26S proteasome regulat 99.1 7.3E-11 1.6E-15 115.8 6.3 166 315-512 186-369 (440)
141 PRK14952 DNA polymerase III su 99.1 1.2E-09 2.7E-14 122.1 16.6 150 293-491 3-174 (584)
142 PRK06647 DNA polymerase III su 99.1 6.3E-09 1.4E-13 116.5 21.0 206 315-605 17-241 (563)
143 PRK14965 DNA polymerase III su 99.1 4.7E-09 1E-13 118.5 20.2 153 291-491 4-175 (576)
144 TIGR03420 DnaA_homol_Hda DnaA 99.1 1.7E-09 3.6E-14 108.2 14.9 177 348-605 39-225 (226)
145 KOG0740 AAA+-type ATPase [Post 99.1 3.5E-10 7.7E-15 119.5 10.0 174 313-511 152-336 (428)
146 PRK12402 replication factor C 99.1 2E-09 4.2E-14 114.6 15.9 110 314-436 15-152 (337)
147 PRK07133 DNA polymerase III su 99.1 4.4E-09 9.6E-14 118.9 19.4 140 315-491 19-174 (725)
148 PRK00440 rfc replication facto 99.1 3.8E-09 8.1E-14 111.5 17.6 198 315-605 18-223 (319)
149 PRK07764 DNA polymerase III su 99.1 4.3E-09 9.3E-14 122.2 19.0 147 293-486 5-172 (824)
150 cd00009 AAA The AAA+ (ATPases 99.1 4.5E-10 9.7E-15 103.3 8.8 142 318-491 2-149 (151)
151 smart00763 AAA_PrkA PrkA AAA d 99.1 8.5E-10 1.8E-14 114.9 11.3 98 402-509 229-328 (361)
152 PRK08903 DnaA regulatory inact 99.1 4.7E-09 1E-13 105.1 16.4 176 348-605 43-223 (227)
153 CHL00095 clpC Clp protease ATP 99.0 3.1E-09 6.7E-14 125.3 17.1 203 314-564 179-404 (821)
154 COG2812 DnaX DNA polymerase II 99.0 3.8E-09 8.3E-14 115.0 16.1 222 291-609 4-245 (515)
155 PRK14953 DNA polymerase III su 99.0 3.4E-09 7.3E-14 116.9 15.9 206 315-605 17-241 (486)
156 PRK10865 protein disaggregatio 99.0 2.4E-09 5.2E-14 126.1 14.9 203 313-563 177-403 (857)
157 PRK09111 DNA polymerase III su 99.0 1.2E-08 2.7E-13 114.7 18.8 140 315-491 25-188 (598)
158 KOG0729 26S proteasome regulat 99.0 7.9E-10 1.7E-14 107.3 7.9 141 344-513 208-362 (435)
159 PRK11331 5-methylcytosine-spec 99.0 1.2E-09 2.7E-14 116.6 10.1 156 313-490 174-355 (459)
160 COG4650 RtcR Sigma54-dependent 99.0 2.9E-09 6.2E-14 104.8 11.6 115 345-461 206-332 (531)
161 PRK06305 DNA polymerase III su 99.0 1E-08 2.3E-13 112.3 17.4 140 315-491 18-177 (451)
162 PRK14970 DNA polymerase III su 99.0 2.1E-08 4.6E-13 107.9 19.7 134 315-486 18-160 (367)
163 TIGR01243 CDC48 AAA family ATP 99.0 1.3E-09 2.7E-14 127.5 10.8 154 315-499 179-350 (733)
164 PRK14950 DNA polymerase III su 99.0 1.8E-08 3.8E-13 114.5 19.7 124 291-436 4-147 (585)
165 KOG0742 AAA+-type ATPase [Post 99.0 9.1E-10 2E-14 112.8 7.9 135 348-512 385-532 (630)
166 TIGR02397 dnaX_nterm DNA polym 99.0 7.9E-09 1.7E-13 110.8 14.8 137 314-486 14-169 (355)
167 PRK14954 DNA polymerase III su 99.0 1.4E-08 3.1E-13 114.4 17.3 136 315-486 17-179 (620)
168 PHA02544 44 clamp loader, smal 99.0 1.1E-08 2.4E-13 107.8 15.5 130 315-487 22-154 (316)
169 PRK14948 DNA polymerase III su 98.9 2E-08 4.3E-13 113.9 16.1 138 314-487 16-174 (620)
170 TIGR03346 chaperone_ClpB ATP-d 98.9 5.6E-09 1.2E-13 123.5 12.2 202 314-563 173-398 (852)
171 PRK08084 DNA replication initi 98.9 2.5E-08 5.3E-13 100.3 14.9 177 348-606 46-234 (235)
172 TIGR02928 orc1/cdc6 family rep 98.9 4.1E-08 8.9E-13 105.7 17.7 233 314-612 15-278 (365)
173 PRK06620 hypothetical protein; 98.9 2.8E-08 6.2E-13 98.1 14.8 166 348-605 45-213 (214)
174 COG1220 HslU ATP-dependent pro 98.9 1E-08 2.2E-13 103.1 10.9 139 409-582 250-401 (444)
175 PRK00411 cdc6 cell division co 98.9 7E-08 1.5E-12 105.0 18.6 230 314-612 30-286 (394)
176 KOG0728 26S proteasome regulat 98.8 2.1E-08 4.6E-13 96.7 11.1 125 345-495 179-319 (404)
177 PTZ00112 origin recognition co 98.8 7E-08 1.5E-12 108.9 16.8 140 411-612 871-1010(1164)
178 PRK14971 DNA polymerase III su 98.8 1.8E-07 3.9E-12 106.2 20.1 140 315-491 18-177 (614)
179 PRK07940 DNA polymerase III su 98.8 9.2E-09 2E-13 110.3 8.7 156 313-496 4-178 (394)
180 PRK04195 replication factor C 98.8 8.2E-08 1.8E-12 106.9 15.6 107 315-435 15-128 (482)
181 KOG0745 Putative ATP-dependent 98.8 8.9E-09 1.9E-13 106.6 6.4 114 348-461 227-357 (564)
182 PRK06893 DNA replication initi 98.7 1.5E-07 3.2E-12 94.3 14.2 178 348-605 40-227 (229)
183 KOG0743 AAA+-type ATPase [Post 98.7 3.6E-08 7.9E-13 103.7 10.0 128 348-508 236-383 (457)
184 PF14532 Sigma54_activ_2: Sigm 98.7 1.6E-08 3.4E-13 93.0 6.1 105 348-486 22-129 (138)
185 PRK09087 hypothetical protein; 98.7 3.3E-07 7.2E-12 91.3 15.2 175 348-608 45-222 (226)
186 COG1067 LonB Predicted ATP-dep 98.7 3.1E-07 6.7E-12 103.3 16.7 175 397-610 213-401 (647)
187 KOG0730 AAA+-type ATPase [Post 98.7 1.3E-07 2.9E-12 103.2 12.9 164 314-509 184-365 (693)
188 PRK08727 hypothetical protein; 98.7 5.1E-07 1.1E-11 90.6 16.1 176 348-605 42-228 (233)
189 COG5271 MDN1 AAA ATPase contai 98.7 3.2E-07 6.9E-12 107.2 16.0 149 348-503 889-1043(4600)
190 PRK09112 DNA polymerase III su 98.7 1.5E-07 3.2E-12 99.8 12.5 154 313-503 22-209 (351)
191 PRK00149 dnaA chromosomal repl 98.7 6.4E-08 1.4E-12 106.9 10.0 192 348-608 149-349 (450)
192 PRK12422 chromosomal replicati 98.7 2.2E-07 4.7E-12 101.6 13.8 184 348-606 142-341 (445)
193 TIGR02688 conserved hypothetic 98.7 2.2E-07 4.9E-12 98.2 13.2 260 287-607 160-432 (449)
194 COG5271 MDN1 AAA ATPase contai 98.7 2.4E-07 5.2E-12 108.1 13.8 137 348-490 1544-1687(4600)
195 KOG0732 AAA+-type ATPase conta 98.6 8.9E-08 1.9E-12 110.4 10.4 189 313-538 264-485 (1080)
196 TIGR00362 DnaA chromosomal rep 98.6 1.2E-07 2.5E-12 103.5 11.0 190 348-607 137-336 (405)
197 COG0542 clpA ATP-binding subun 98.6 8.5E-07 1.9E-11 100.6 17.4 182 347-564 191-396 (786)
198 PRK14087 dnaA chromosomal repl 98.6 1.4E-07 3E-12 103.5 10.7 191 348-608 142-348 (450)
199 PF13337 Lon_2: Putative ATP-d 98.6 2.7E-06 6E-11 90.6 19.6 258 287-607 159-430 (457)
200 TIGR03015 pepcterm_ATPase puta 98.6 8.5E-07 1.8E-11 91.1 14.9 197 348-609 44-267 (269)
201 PF12775 AAA_7: P-loop contain 98.6 7.6E-08 1.6E-12 98.5 6.9 147 348-511 34-196 (272)
202 KOG0651 26S proteasome regulat 98.6 7.7E-08 1.7E-12 95.9 5.8 118 344-492 163-301 (388)
203 KOG0991 Replication factor C, 98.6 8.2E-08 1.8E-12 91.9 5.5 136 312-489 25-168 (333)
204 PRK14086 dnaA chromosomal repl 98.5 2.6E-07 5.7E-12 102.8 10.2 188 349-606 316-513 (617)
205 KOG0744 AAA+-type ATPase [Post 98.5 1.7E-07 3.6E-12 94.0 7.2 132 344-502 174-335 (423)
206 PRK05642 DNA replication initi 98.5 2.1E-06 4.5E-11 86.3 13.9 177 348-605 46-232 (234)
207 COG1474 CDC6 Cdc6-related prot 98.5 2E-06 4.4E-11 91.5 14.3 208 348-614 43-271 (366)
208 PRK04132 replication factor C 98.5 4.8E-06 1E-10 96.5 17.8 115 347-491 564-686 (846)
209 smart00382 AAA ATPases associa 98.4 3.2E-07 6.9E-12 83.4 6.4 109 348-461 3-125 (148)
210 PF12774 AAA_6: Hydrolytic ATP 98.4 2.1E-06 4.5E-11 85.5 12.5 188 348-589 33-228 (231)
211 KOG1051 Chaperone HSP104 and r 98.4 8.1E-07 1.8E-11 102.1 10.8 150 306-462 554-711 (898)
212 PF05673 DUF815: Protein of un 98.4 5.3E-06 1.1E-10 81.8 14.8 156 315-501 28-201 (249)
213 PF06068 TIP49: TIP49 C-termin 98.4 1.5E-06 3.3E-11 89.9 11.0 117 410-584 279-395 (398)
214 PRK14088 dnaA chromosomal repl 98.4 5.9E-07 1.3E-11 98.5 8.1 24 348-371 131-154 (440)
215 PF13177 DNA_pol3_delta2: DNA 98.4 9.6E-07 2.1E-11 83.3 8.0 134 318-487 1-155 (162)
216 KOG0741 AAA+-type ATPase [Post 98.3 4.5E-07 9.8E-12 96.2 5.2 123 348-497 257-403 (744)
217 PRK05564 DNA polymerase III su 98.3 2.3E-06 4.9E-11 90.1 10.5 143 314-498 4-156 (313)
218 COG0470 HolB ATPase involved i 98.3 7E-07 1.5E-11 94.3 6.7 138 315-489 2-164 (325)
219 PHA01747 putative ATP-dependen 98.3 3E-06 6.5E-11 87.1 10.2 201 305-541 150-371 (425)
220 PF00308 Bac_DnaA: Bacterial d 98.3 6.1E-06 1.3E-10 81.9 11.7 169 348-590 35-218 (219)
221 PRK07471 DNA polymerase III su 98.3 2E-06 4.2E-11 91.8 8.6 154 313-503 18-209 (365)
222 PRK08058 DNA polymerase III su 98.3 1.6E-06 3.4E-11 91.7 7.3 146 315-499 6-174 (329)
223 PRK07399 DNA polymerase III su 98.3 1.9E-06 4.1E-11 90.1 7.6 150 313-501 3-189 (314)
224 KOG1942 DNA helicase, TBP-inte 98.2 8.6E-06 1.9E-10 80.7 11.4 147 409-617 296-447 (456)
225 KOG0736 Peroxisome assembly fa 98.2 1.6E-05 3.5E-10 88.4 14.6 269 341-662 425-702 (953)
226 TIGR02653 Lon_rel_chp conserve 98.2 2.6E-05 5.7E-10 86.6 15.9 260 287-607 167-439 (675)
227 TIGR00678 holB DNA polymerase 98.1 6.3E-06 1.4E-10 79.9 7.4 118 348-491 15-152 (188)
228 COG2607 Predicted ATPase (AAA+ 98.1 4.1E-05 8.9E-10 74.3 12.6 117 315-462 61-184 (287)
229 KOG0990 Replication factor C, 98.1 1E-05 2.2E-10 81.6 8.6 111 348-486 63-183 (360)
230 PRK05707 DNA polymerase III su 98.1 7.8E-06 1.7E-10 85.9 7.4 126 347-498 22-169 (328)
231 PRK15455 PrkA family serine pr 98.0 8.4E-05 1.8E-09 81.7 13.9 77 402-487 248-326 (644)
232 PRK12377 putative replication 97.9 2.1E-06 4.6E-11 86.4 -0.1 99 348-462 102-206 (248)
233 KOG2680 DNA helicase TIP49, TB 97.9 0.00015 3.3E-09 72.3 12.6 183 348-615 253-436 (454)
234 PF00910 RNA_helicase: RNA hel 97.9 1.2E-05 2.6E-10 70.2 4.4 98 350-460 1-106 (107)
235 PRK06526 transposase; Provisio 97.9 5.6E-06 1.2E-10 83.8 1.9 116 322-462 81-201 (254)
236 COG0593 DnaA ATPase involved i 97.8 0.00038 8.2E-09 74.3 15.1 196 348-612 114-317 (408)
237 PRK08116 hypothetical protein; 97.8 1.1E-05 2.3E-10 82.7 2.7 101 348-462 115-221 (268)
238 KOG1808 AAA ATPase containing 97.8 1.4E-05 3.1E-10 97.7 3.6 148 348-502 441-594 (1856)
239 PRK08181 transposase; Validate 97.8 5.3E-06 1.2E-10 84.5 -0.3 118 347-485 106-230 (269)
240 KOG2035 Replication factor C, 97.7 9.6E-05 2.1E-09 73.1 7.5 91 411-539 129-219 (351)
241 TIGR00602 rad24 checkpoint pro 97.7 0.00033 7.1E-09 79.5 12.9 55 313-374 83-137 (637)
242 PF01695 IstB_IS21: IstB-like 97.7 9.5E-06 2.1E-10 77.7 0.4 100 346-462 46-150 (178)
243 PRK08769 DNA polymerase III su 97.7 0.00023 5E-09 74.3 10.4 55 410-489 114-168 (319)
244 PRK06871 DNA polymerase III su 97.6 0.00012 2.7E-09 76.4 7.9 124 346-496 23-168 (325)
245 PF08298 AAA_PrkA: PrkA AAA do 97.6 0.00015 3.3E-09 75.3 8.4 85 402-496 226-312 (358)
246 KOG0735 AAA+-type ATPase [Post 97.6 0.00035 7.5E-09 77.4 11.4 139 347-510 431-588 (952)
247 PRK09183 transposase/IS protei 97.6 2.7E-05 6E-10 79.3 2.9 103 344-462 99-206 (259)
248 PRK06090 DNA polymerase III su 97.6 0.00018 4E-09 75.0 8.5 125 345-495 23-168 (319)
249 PRK06835 DNA replication prote 97.6 2E-05 4.3E-10 82.8 1.2 101 348-462 184-289 (329)
250 PRK07993 DNA polymerase III su 97.6 0.00019 4.1E-09 75.8 8.4 124 345-495 22-168 (334)
251 PRK08699 DNA polymerase III su 97.5 0.00018 3.9E-09 75.6 7.1 61 408-495 112-173 (325)
252 PF05621 TniB: Bacterial TniB 97.5 0.0032 7E-08 64.3 15.6 60 306-373 26-87 (302)
253 PRK06964 DNA polymerase III su 97.5 0.00025 5.3E-09 74.8 7.4 66 409-500 132-197 (342)
254 PRK07952 DNA replication prote 97.4 4.5E-05 9.7E-10 76.6 1.2 100 348-462 100-205 (244)
255 PF13654 AAA_32: AAA domain; P 97.4 0.00034 7.4E-09 77.6 7.5 169 399-607 322-505 (509)
256 COG1484 DnaC DNA replication p 97.4 5.8E-05 1.3E-09 76.5 1.3 123 315-462 80-209 (254)
257 PF05272 VirE: Virulence-assoc 97.4 0.00023 4.9E-09 69.3 5.2 97 347-462 52-150 (198)
258 KOG2170 ATPase of the AAA+ sup 97.4 0.0011 2.3E-08 66.8 9.8 141 306-463 74-226 (344)
259 PRK06921 hypothetical protein; 97.3 6.8E-05 1.5E-09 76.6 1.1 25 348-372 118-142 (266)
260 COG3854 SpoIIIAA ncharacterize 97.3 0.00043 9.3E-09 66.9 5.7 89 347-437 137-244 (308)
261 PRK05917 DNA polymerase III su 97.3 0.00061 1.3E-08 69.8 7.0 115 347-489 19-150 (290)
262 COG1618 Predicted nucleotide k 97.2 0.0017 3.6E-08 59.6 8.5 25 347-371 5-29 (179)
263 PF13401 AAA_22: AAA domain; P 97.2 0.00037 7.9E-09 62.9 4.3 25 347-371 4-28 (131)
264 PF03266 NTPase_1: NTPase; In 97.2 0.00043 9.4E-09 65.6 4.9 23 349-371 1-23 (168)
265 PF13148 DUF3987: Protein of u 97.2 0.0053 1.1E-07 66.4 13.6 184 410-616 150-368 (378)
266 KOG1969 DNA replication checkp 97.1 0.00036 7.8E-09 77.6 4.2 79 348-434 327-412 (877)
267 PRK08939 primosomal protein Dn 97.1 0.00026 5.7E-09 73.7 3.0 24 348-371 157-180 (306)
268 PF13335 Mg_chelatase_2: Magne 97.1 0.0024 5.3E-08 54.3 7.7 67 523-607 29-95 (96)
269 PF06309 Torsin: Torsin; Inte 97.0 0.00064 1.4E-08 60.2 3.8 60 306-370 17-76 (127)
270 PRK08118 topology modulation p 96.9 0.0047 1E-07 58.5 8.7 30 349-378 3-32 (167)
271 KOG1514 Origin recognition com 96.9 0.014 3.1E-07 65.2 13.3 142 409-614 508-661 (767)
272 KOG2545 Conserved membrane pro 96.8 0.065 1.4E-06 56.2 16.9 244 319-608 283-535 (543)
273 cd01120 RecA-like_NTPases RecA 96.7 0.0057 1.2E-07 57.0 7.8 23 349-371 1-23 (165)
274 PHA02774 E1; Provisional 96.7 0.0048 1E-07 68.3 7.9 97 348-462 435-533 (613)
275 PHA02624 large T antigen; Prov 96.7 0.0051 1.1E-07 68.4 8.1 115 348-493 432-561 (647)
276 PF03969 AFG1_ATPase: AFG1-lik 96.6 0.001 2.2E-08 70.8 2.6 28 346-373 61-88 (362)
277 COG5245 DYN1 Dynein, heavy cha 96.5 0.0022 4.7E-08 76.1 4.0 115 347-462 1494-1621(3164)
278 PF13207 AAA_17: AAA domain; P 96.4 0.0018 3.8E-08 57.6 2.4 28 350-377 2-29 (121)
279 PF13173 AAA_14: AAA domain 96.4 0.0046 1E-07 55.8 5.0 81 348-436 3-87 (128)
280 KOG3347 Predicted nucleotide k 96.4 0.0023 5E-08 57.7 2.7 35 345-379 5-39 (176)
281 PRK07132 DNA polymerase III su 96.3 0.0077 1.7E-07 62.5 6.5 112 348-487 19-143 (299)
282 KOG0741 AAA+-type ATPase [Post 96.3 0.003 6.5E-08 68.0 3.5 127 348-496 539-674 (744)
283 PF13604 AAA_30: AAA domain; P 96.2 0.0075 1.6E-07 58.8 5.8 87 349-435 20-119 (196)
284 PF13671 AAA_33: AAA domain; P 96.2 0.003 6.4E-08 57.9 2.8 27 350-376 2-28 (143)
285 COG1936 Predicted nucleotide k 96.2 0.011 2.3E-07 55.2 5.9 26 349-375 2-27 (180)
286 PRK13947 shikimate kinase; Pro 96.2 0.0039 8.4E-08 59.2 3.2 31 349-379 3-33 (171)
287 TIGR01618 phage_P_loop phage n 96.1 0.006 1.3E-07 60.2 4.3 24 345-368 10-33 (220)
288 PRK00131 aroK shikimate kinase 96.1 0.0045 9.8E-08 58.7 3.3 30 348-377 5-34 (175)
289 COG4930 Predicted ATP-dependen 96.1 0.11 2.5E-06 54.3 13.3 130 306-461 193-329 (683)
290 PRK14532 adenylate kinase; Pro 96.0 0.0046 9.9E-08 59.8 3.1 30 349-378 2-31 (188)
291 PRK05818 DNA polymerase III su 96.0 0.0081 1.8E-07 60.4 4.9 117 347-488 7-142 (261)
292 PF05729 NACHT: NACHT domain 96.0 0.009 2E-07 55.9 5.0 21 350-370 3-23 (166)
293 PRK03839 putative kinase; Prov 96.0 0.0044 9.6E-08 59.5 2.9 31 349-379 2-32 (180)
294 PTZ00088 adenylate kinase 1; P 96.0 0.0058 1.3E-07 61.0 3.7 33 347-379 6-38 (229)
295 PRK00625 shikimate kinase; Pro 96.0 0.005 1.1E-07 58.6 2.9 31 349-379 2-32 (173)
296 cd00464 SK Shikimate kinase (S 95.9 0.0059 1.3E-07 56.7 3.1 30 349-378 1-30 (154)
297 PRK10536 hypothetical protein; 95.9 0.02 4.4E-07 57.5 6.8 22 348-369 75-96 (262)
298 PRK13949 shikimate kinase; Pro 95.8 0.0061 1.3E-07 57.9 3.0 30 349-378 3-32 (169)
299 TIGR01613 primase_Cterm phage/ 95.8 0.13 2.8E-06 53.9 12.9 121 348-487 77-198 (304)
300 PRK14530 adenylate kinase; Pro 95.8 0.007 1.5E-07 59.9 3.2 31 348-378 4-34 (215)
301 PRK07261 topology modulation p 95.8 0.0074 1.6E-07 57.5 3.1 29 349-377 2-30 (171)
302 PHA00729 NTP-binding motif con 95.7 0.0054 1.2E-07 60.5 2.1 25 348-372 18-42 (226)
303 PRK04296 thymidine kinase; Pro 95.7 0.025 5.4E-07 54.8 6.8 21 350-370 5-25 (190)
304 COG4178 ABC-type uncharacteriz 95.7 0.017 3.7E-07 64.6 6.3 31 342-372 414-444 (604)
305 COG0563 Adk Adenylate kinase a 95.7 0.0066 1.4E-07 58.1 2.6 30 349-378 2-31 (178)
306 TIGR01359 UMP_CMP_kin_fam UMP- 95.7 0.0086 1.9E-07 57.5 3.2 28 350-377 2-29 (183)
307 PRK07276 DNA polymerase III su 95.6 0.058 1.3E-06 55.6 9.2 55 409-489 104-159 (290)
308 COG3267 ExeA Type II secretory 95.6 0.051 1.1E-06 53.9 8.1 198 348-602 52-267 (269)
309 PRK06217 hypothetical protein; 95.6 0.01 2.2E-07 57.2 3.3 31 349-379 3-33 (183)
310 cd03222 ABC_RNaseL_inhibitor T 95.6 0.017 3.6E-07 55.3 4.7 86 344-435 22-116 (177)
311 PF13245 AAA_19: Part of AAA d 95.6 0.017 3.6E-07 46.9 4.0 22 350-371 13-35 (76)
312 cd01131 PilT Pilus retraction 95.5 0.044 9.5E-07 53.5 7.8 23 350-372 4-26 (198)
313 PF03215 Rad17: Rad17 cell cyc 95.5 0.036 7.7E-07 61.9 7.8 29 349-377 47-75 (519)
314 cd01428 ADK Adenylate kinase ( 95.4 0.012 2.6E-07 57.0 3.3 29 349-377 1-29 (194)
315 PRK14531 adenylate kinase; Pro 95.4 0.011 2.5E-07 56.8 3.1 30 349-378 4-33 (183)
316 COG0703 AroK Shikimate kinase 95.4 0.011 2.3E-07 55.7 2.6 32 348-379 3-34 (172)
317 TIGR02768 TraA_Ti Ti-type conj 95.4 0.018 3.9E-07 67.5 5.2 83 349-434 370-464 (744)
318 TIGR01313 therm_gnt_kin carboh 95.3 0.013 2.8E-07 55.1 3.2 27 350-376 1-27 (163)
319 cd00227 CPT Chloramphenicol (C 95.3 0.011 2.3E-07 56.6 2.6 30 348-377 3-32 (175)
320 PRK05057 aroK shikimate kinase 95.3 0.014 3.1E-07 55.6 3.4 32 348-379 5-36 (172)
321 PF05970 PIF1: PIF1-like helic 95.3 0.013 2.8E-07 63.0 3.5 87 348-434 23-127 (364)
322 cd02021 GntK Gluconate kinase 95.3 0.014 3E-07 54.1 3.0 27 350-376 2-28 (150)
323 PF09848 DUF2075: Uncharacteri 95.2 0.011 2.3E-07 63.4 2.5 23 349-371 3-25 (352)
324 PF00519 PPV_E1_C: Papillomavi 95.2 0.033 7.2E-07 58.5 5.9 95 348-462 263-361 (432)
325 KOG1051 Chaperone HSP104 and r 95.2 0.027 5.8E-07 65.8 5.7 47 312-371 185-232 (898)
326 cd03238 ABC_UvrA The excision 95.2 0.057 1.2E-06 51.6 7.1 27 343-369 17-43 (176)
327 PRK13948 shikimate kinase; Pro 95.2 0.018 3.9E-07 55.3 3.6 34 346-379 9-42 (182)
328 PF13238 AAA_18: AAA domain; P 95.2 0.011 2.3E-07 52.9 2.0 22 350-371 1-22 (129)
329 PF13191 AAA_16: AAA ATPase do 95.1 0.018 3.9E-07 55.1 3.5 26 348-373 25-50 (185)
330 PRK13946 shikimate kinase; Pro 95.1 0.017 3.6E-07 55.7 3.2 34 346-379 9-42 (184)
331 PLN02200 adenylate kinase fami 95.1 0.02 4.4E-07 57.4 3.9 32 346-377 42-73 (234)
332 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.1 0.033 7.2E-07 51.3 5.0 85 345-435 24-115 (144)
333 PRK14528 adenylate kinase; Pro 95.0 0.017 3.8E-07 55.7 3.1 30 349-378 3-32 (186)
334 cd02019 NK Nucleoside/nucleoti 95.0 0.016 3.4E-07 46.1 2.3 22 350-371 2-23 (69)
335 TIGR01351 adk adenylate kinase 95.0 0.017 3.7E-07 56.9 3.0 29 350-378 2-30 (210)
336 cd00267 ABC_ATPase ABC (ATP-bi 95.0 0.05 1.1E-06 50.8 6.0 92 344-435 22-125 (157)
337 TIGR01360 aden_kin_iso1 adenyl 95.0 0.015 3.3E-07 55.9 2.4 29 349-377 5-33 (188)
338 TIGR01447 recD exodeoxyribonuc 94.9 0.062 1.3E-06 61.2 7.5 36 320-370 148-183 (586)
339 COG1102 Cmk Cytidylate kinase 94.9 0.019 4.2E-07 52.8 2.8 31 350-380 3-33 (179)
340 cd02020 CMPK Cytidine monophos 94.9 0.019 4.1E-07 52.7 2.9 30 350-379 2-31 (147)
341 PRK13826 Dtr system oriT relax 94.9 0.052 1.1E-06 65.4 7.1 85 348-435 398-494 (1102)
342 PRK14526 adenylate kinase; Pro 94.9 0.02 4.2E-07 56.5 3.1 31 349-379 2-32 (211)
343 TIGR02858 spore_III_AA stage I 94.9 0.076 1.7E-06 54.3 7.4 26 348-373 112-137 (270)
344 PRK06762 hypothetical protein; 94.8 0.022 4.8E-07 53.7 3.2 27 349-375 4-30 (166)
345 PRK03731 aroL shikimate kinase 94.8 0.023 4.9E-07 53.9 3.2 30 349-378 4-33 (171)
346 PRK02496 adk adenylate kinase; 94.8 0.019 4E-07 55.3 2.6 29 349-377 3-31 (184)
347 COG4619 ABC-type uncharacteriz 94.8 0.023 5.1E-07 52.6 2.9 31 342-372 24-54 (223)
348 KOG2383 Predicted ATPase [Gene 94.8 0.013 2.9E-07 61.3 1.5 102 347-462 114-234 (467)
349 PRK00279 adk adenylate kinase; 94.6 0.025 5.5E-07 55.9 3.2 31 349-379 2-32 (215)
350 PRK10078 ribose 1,5-bisphospho 94.6 0.023 5.1E-07 54.8 2.8 30 348-377 3-32 (186)
351 PRK13889 conjugal transfer rel 94.6 0.043 9.3E-07 65.6 5.5 83 349-434 364-458 (988)
352 PLN02674 adenylate kinase 94.6 0.026 5.7E-07 56.6 3.1 32 348-379 32-63 (244)
353 cd02027 APSK Adenosine 5'-phos 94.5 0.046 1E-06 50.7 4.4 22 350-371 2-23 (149)
354 PF01583 APS_kinase: Adenylyls 94.4 0.041 8.9E-07 51.2 3.7 89 348-436 3-99 (156)
355 cd03216 ABC_Carb_Monos_I This 94.4 0.1 2.2E-06 49.2 6.5 92 344-435 23-127 (163)
356 TIGR01448 recD_rel helicase, p 94.4 0.036 7.7E-07 64.9 4.0 84 348-434 339-441 (720)
357 PF00437 T2SE: Type II/IV secr 94.3 0.17 3.6E-06 52.0 8.5 88 348-438 128-223 (270)
358 COG1126 GlnQ ABC-type polar am 94.3 0.0083 1.8E-07 58.0 -1.1 23 348-370 29-51 (240)
359 PF13086 AAA_11: AAA domain; P 94.3 0.037 8E-07 54.9 3.6 22 350-371 20-41 (236)
360 PLN02459 probable adenylate ki 94.3 0.035 7.6E-07 56.1 3.2 32 348-379 30-61 (261)
361 PF06048 DUF927: Domain of unk 94.2 0.029 6.3E-07 58.1 2.7 69 348-429 194-262 (286)
362 PRK14529 adenylate kinase; Pro 94.2 0.029 6.4E-07 55.5 2.5 30 349-378 2-31 (223)
363 KOG0066 eIF2-interacting prote 94.1 0.18 3.9E-06 53.5 8.1 57 405-461 718-777 (807)
364 TIGR00150 HI0065_YjeE ATPase, 94.1 0.058 1.3E-06 48.7 4.0 26 348-373 23-48 (133)
365 PRK14527 adenylate kinase; Pro 94.1 0.036 7.9E-07 53.7 2.8 28 348-375 7-34 (191)
366 PRK06547 hypothetical protein; 94.0 0.04 8.7E-07 52.4 3.0 30 348-377 16-45 (172)
367 PF01443 Viral_helicase1: Vira 94.0 0.061 1.3E-06 53.7 4.4 21 350-370 1-21 (234)
368 cd01130 VirB11-like_ATPase Typ 94.0 0.064 1.4E-06 51.8 4.3 25 348-372 26-50 (186)
369 TIGR02322 phosphon_PhnN phosph 93.9 0.035 7.6E-07 53.1 2.4 24 349-372 3-26 (179)
370 PRK04040 adenylate kinase; Pro 93.9 0.042 9.1E-07 53.1 2.9 25 348-372 3-27 (188)
371 PRK13900 type IV secretion sys 93.9 0.061 1.3E-06 56.8 4.3 26 348-373 161-186 (332)
372 PRK01184 hypothetical protein; 93.9 0.044 9.4E-07 52.7 2.9 28 349-377 3-30 (184)
373 PRK10875 recD exonuclease V su 93.9 0.04 8.7E-07 62.8 3.0 37 319-370 154-190 (615)
374 KOG1942 DNA helicase, TBP-inte 93.8 0.063 1.4E-06 54.0 3.9 56 309-373 33-90 (456)
375 PRK14700 recombination factor 93.8 0.21 4.6E-06 51.1 7.8 103 454-605 10-112 (300)
376 PRK08233 hypothetical protein; 93.8 0.039 8.5E-07 52.7 2.4 26 348-373 4-29 (182)
377 PF13479 AAA_24: AAA domain 93.7 0.035 7.6E-07 54.8 1.9 27 347-377 3-29 (213)
378 TIGR01420 pilT_fam pilus retra 93.7 0.24 5.2E-06 52.8 8.4 25 348-372 123-147 (343)
379 PTZ00301 uridine kinase; Provi 93.6 0.14 3E-06 50.4 6.0 23 349-371 5-27 (210)
380 PF13521 AAA_28: AAA domain; P 93.6 0.049 1.1E-06 51.2 2.7 21 350-370 2-22 (163)
381 PF08477 Miro: Miro-like prote 93.6 0.044 9.6E-07 48.2 2.2 24 349-372 1-24 (119)
382 PRK03846 adenylylsulfate kinas 93.5 0.088 1.9E-06 51.3 4.5 24 348-371 25-48 (198)
383 PF13555 AAA_29: P-loop contai 93.5 0.053 1.1E-06 41.9 2.2 23 349-371 25-47 (62)
384 cd03227 ABC_Class2 ABC-type Cl 93.5 0.14 3E-06 48.2 5.5 87 348-435 22-126 (162)
385 COG1116 TauB ABC-type nitrate/ 93.4 0.042 9E-07 54.5 2.0 25 348-372 30-54 (248)
386 PRK05541 adenylylsulfate kinas 93.4 0.049 1.1E-06 52.0 2.4 27 346-372 6-32 (176)
387 PRK12723 flagellar biosynthesi 93.4 0.48 1E-05 51.0 10.2 24 347-370 174-197 (388)
388 TIGR02173 cyt_kin_arch cytidyl 93.4 0.051 1.1E-06 51.3 2.5 28 350-377 3-30 (171)
389 cd00071 GMPK Guanosine monopho 93.4 0.07 1.5E-06 48.7 3.3 25 350-374 2-26 (137)
390 PF00406 ADK: Adenylate kinase 93.4 0.045 9.8E-07 50.8 2.0 26 352-377 1-26 (151)
391 PRK04182 cytidylate kinase; Pr 93.4 0.061 1.3E-06 51.2 3.0 29 349-377 2-30 (180)
392 COG3910 Predicted ATPase [Gene 93.3 0.28 6.1E-06 46.5 7.0 22 350-371 40-61 (233)
393 PRK08154 anaerobic benzoate ca 93.3 0.1 2.3E-06 54.6 4.8 35 343-377 129-163 (309)
394 PHA02530 pseT polynucleotide k 93.2 0.063 1.4E-06 56.0 3.1 24 349-372 4-27 (300)
395 KOG1970 Checkpoint RAD17-RFC c 93.2 0.14 2.9E-06 56.1 5.5 30 348-377 111-140 (634)
396 PLN02165 adenylate isopentenyl 93.2 0.07 1.5E-06 55.8 3.3 31 348-378 44-74 (334)
397 PLN02199 shikimate kinase 93.2 0.068 1.5E-06 54.8 3.1 32 348-379 103-134 (303)
398 COG4088 Predicted nucleotide k 93.2 0.045 9.8E-07 52.4 1.7 86 350-435 4-99 (261)
399 PRK12339 2-phosphoglycerate ki 93.1 0.07 1.5E-06 51.9 3.0 30 348-377 4-33 (197)
400 KOG0060 Long-chain acyl-CoA tr 93.1 0.048 1E-06 59.9 2.0 29 344-372 458-486 (659)
401 PRK13764 ATPase; Provisional 93.1 0.088 1.9E-06 59.6 4.1 72 348-420 258-335 (602)
402 PF12780 AAA_8: P-loop contain 93.1 0.069 1.5E-06 54.6 3.0 32 348-379 32-63 (268)
403 COG1485 Predicted ATPase [Gene 93.0 0.054 1.2E-06 56.2 2.1 101 347-462 65-171 (367)
404 TIGR03263 guanyl_kin guanylate 93.0 0.052 1.1E-06 51.8 1.9 25 349-373 3-27 (180)
405 PRK13851 type IV secretion sys 92.9 0.1 2.2E-06 55.3 4.1 26 348-373 163-188 (344)
406 PRK00300 gmk guanylate kinase; 92.9 0.07 1.5E-06 52.2 2.6 25 348-372 6-30 (205)
407 PF09439 SRPRB: Signal recogni 92.8 0.17 3.7E-06 48.3 4.9 23 348-370 4-26 (181)
408 TIGR03574 selen_PSTK L-seryl-t 92.7 0.062 1.3E-06 54.5 2.0 23 350-372 2-24 (249)
409 PRK09825 idnK D-gluconate kina 92.7 0.087 1.9E-06 50.3 2.9 27 348-374 4-30 (176)
410 PRK08356 hypothetical protein; 92.6 0.1 2.2E-06 50.8 3.3 22 348-369 6-27 (195)
411 PRK05800 cobU adenosylcobinami 92.6 0.1 2.2E-06 49.5 3.2 29 349-377 3-31 (170)
412 PRK13808 adenylate kinase; Pro 92.5 0.088 1.9E-06 55.2 2.9 30 349-378 2-31 (333)
413 COG3839 MalK ABC-type sugar tr 92.5 0.06 1.3E-06 56.5 1.6 24 348-371 30-53 (338)
414 KOG2227 Pre-initiation complex 92.4 0.15 3.2E-06 54.8 4.4 43 410-462 257-299 (529)
415 TIGR00235 udk uridine kinase. 92.4 0.078 1.7E-06 52.1 2.3 25 348-372 7-31 (207)
416 PRK12338 hypothetical protein; 92.4 0.11 2.3E-06 54.2 3.3 30 347-376 4-33 (319)
417 PRK05480 uridine/cytidine kina 92.4 0.083 1.8E-06 51.9 2.4 26 347-372 6-31 (209)
418 cd02023 UMPK Uridine monophosp 92.4 0.078 1.7E-06 51.6 2.3 22 350-371 2-23 (198)
419 COG0529 CysC Adenylylsulfate k 92.4 0.23 5E-06 46.6 5.1 90 348-437 24-121 (197)
420 PRK13709 conjugal transfer nic 92.4 0.16 3.4E-06 64.2 5.3 88 348-435 985-1088(1747)
421 COG5545 Predicted P-loop ATPas 92.3 0.13 2.8E-06 53.4 3.6 134 309-462 163-301 (517)
422 KOG0058 Peptide exporter, ABC 92.2 0.39 8.5E-06 54.5 7.7 27 344-370 491-517 (716)
423 cd01124 KaiC KaiC is a circadi 92.1 0.085 1.8E-06 50.6 2.1 20 350-369 2-21 (187)
424 cd03281 ABC_MSH5_euk MutS5 hom 92.1 0.39 8.6E-06 47.4 6.8 22 348-369 30-51 (213)
425 cd01129 PulE-GspE PulE/GspE Th 92.1 1 2.2E-05 46.1 9.9 88 348-437 81-175 (264)
426 cd02022 DPCK Dephospho-coenzym 92.0 0.13 2.8E-06 49.3 3.2 29 350-379 2-30 (179)
427 PRK11545 gntK gluconate kinase 92.0 0.13 2.8E-06 48.5 3.0 24 353-376 1-24 (163)
428 PF00485 PRK: Phosphoribulokin 91.9 0.091 2E-06 51.0 2.1 24 350-373 2-25 (194)
429 cd00820 PEPCK_HprK Phosphoenol 91.9 0.094 2E-06 45.4 1.9 21 348-368 16-36 (107)
430 TIGR00017 cmk cytidylate kinas 91.9 0.12 2.7E-06 51.0 3.0 32 348-379 3-34 (217)
431 PF00005 ABC_tran: ABC transpo 91.9 0.07 1.5E-06 48.4 1.2 27 345-371 9-35 (137)
432 TIGR02782 TrbB_P P-type conjug 91.9 0.18 3.8E-06 52.6 4.2 25 348-372 133-157 (299)
433 PF01926 MMR_HSR1: 50S ribosom 91.9 0.09 1.9E-06 46.2 1.8 21 349-369 1-21 (116)
434 TIGR02788 VirB11 P-type DNA tr 91.9 0.16 3.5E-06 53.2 4.0 26 348-373 145-170 (308)
435 COG2274 SunT ABC-type bacterio 91.8 0.35 7.5E-06 56.3 6.9 27 345-371 497-523 (709)
436 COG1120 FepC ABC-type cobalami 91.8 0.098 2.1E-06 52.7 2.1 27 346-372 27-53 (258)
437 COG3842 PotA ABC-type spermidi 91.7 0.084 1.8E-06 55.7 1.6 22 349-370 33-54 (352)
438 KOG0064 Peroxisomal long-chain 91.7 0.096 2.1E-06 56.9 2.1 30 344-373 505-534 (728)
439 cd03239 ABC_SMC_head The struc 91.7 0.45 9.8E-06 45.5 6.6 28 408-435 115-143 (178)
440 PRK00889 adenylylsulfate kinas 91.7 0.1 2.2E-06 49.7 2.1 25 348-372 5-29 (175)
441 PRK14737 gmk guanylate kinase; 91.6 0.13 2.9E-06 49.6 2.8 26 348-373 5-30 (186)
442 TIGR02525 plasmid_TraJ plasmid 91.6 0.48 1E-05 50.8 7.3 87 349-437 151-251 (372)
443 PRK11174 cysteine/glutathione 91.6 0.29 6.3E-06 56.2 6.1 30 343-372 372-401 (588)
444 PRK13833 conjugal transfer pro 91.6 0.2 4.3E-06 52.6 4.2 24 348-371 145-168 (323)
445 PF07931 CPT: Chloramphenicol 91.6 0.14 3E-06 48.7 2.8 31 349-379 3-33 (174)
446 cd03243 ABC_MutS_homologs The 91.6 0.32 7E-06 47.5 5.6 25 345-369 27-51 (202)
447 PRK12678 transcription termina 91.5 0.13 2.9E-06 57.1 2.9 24 348-371 417-440 (672)
448 PRK06581 DNA polymerase III su 91.4 0.38 8.3E-06 47.7 5.7 112 348-488 16-143 (263)
449 PF01637 Arch_ATPase: Archaeal 91.3 0.15 3.4E-06 50.3 3.1 25 348-372 21-45 (234)
450 PRK13894 conjugal transfer ATP 91.3 0.21 4.6E-06 52.4 4.2 23 348-370 149-171 (319)
451 PF10662 PduV-EutP: Ethanolami 91.3 0.11 2.4E-06 47.4 1.8 22 349-370 3-24 (143)
452 PRK14730 coaE dephospho-CoA ki 91.3 0.16 3.4E-06 49.4 3.0 30 349-378 3-32 (195)
453 COG1117 PstB ABC-type phosphat 91.3 0.12 2.6E-06 50.0 2.0 24 348-371 34-57 (253)
454 cd01918 HprK_C HprK/P, the bif 91.3 0.13 2.8E-06 47.4 2.2 23 348-370 15-37 (149)
455 TIGR02237 recomb_radB DNA repa 91.2 0.14 3E-06 50.2 2.6 23 347-369 12-34 (209)
456 TIGR00073 hypB hydrogenase acc 91.2 0.088 1.9E-06 51.7 1.1 26 347-372 22-47 (207)
457 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.2 0.12 2.5E-06 51.2 2.0 28 345-372 28-55 (218)
458 cd03258 ABC_MetN_methionine_tr 91.1 0.12 2.6E-06 51.7 2.1 29 344-372 28-56 (233)
459 PRK06851 hypothetical protein; 91.1 0.31 6.8E-06 51.9 5.2 24 348-371 215-238 (367)
460 KOG3595 Dyneins, heavy chain [ 91.1 0.33 7.2E-06 61.1 6.3 151 348-512 128-290 (1395)
461 cd04177 RSR1 RSR1 subgroup. R 91.1 0.13 2.8E-06 48.4 2.1 23 348-370 2-24 (168)
462 cd01128 rho_factor Transcripti 91.1 0.29 6.3E-06 49.5 4.8 26 348-373 17-42 (249)
463 cd04137 RheB Rheb (Ras Homolog 91.1 0.13 2.7E-06 49.0 2.1 22 348-369 2-23 (180)
464 cd03292 ABC_FtsE_transporter F 91.1 0.12 2.7E-06 50.8 2.0 29 344-372 24-52 (214)
465 PRK06696 uridine kinase; Valid 91.1 0.17 3.8E-06 50.3 3.1 26 347-372 22-47 (223)
466 cd02024 NRK1 Nicotinamide ribo 91.0 0.18 3.8E-06 48.6 3.0 23 350-372 2-24 (187)
467 PRK13477 bifunctional pantoate 91.0 0.17 3.7E-06 56.3 3.2 46 331-377 269-314 (512)
468 cd03269 ABC_putative_ATPase Th 91.0 0.12 2.7E-06 50.7 2.0 29 344-372 23-51 (210)
469 cd03247 ABCC_cytochrome_bd The 91.0 0.13 2.9E-06 49.1 2.1 29 344-372 25-53 (178)
470 PRK13541 cytochrome c biogenes 91.0 0.13 2.8E-06 49.9 2.1 29 344-372 23-51 (195)
471 PRK05439 pantothenate kinase; 90.9 0.2 4.3E-06 52.2 3.5 26 347-372 86-111 (311)
472 cd03228 ABCC_MRP_Like The MRP 90.9 0.14 3E-06 48.6 2.2 29 344-372 25-53 (171)
473 PRK14712 conjugal transfer nic 90.9 0.24 5.3E-06 61.8 4.7 87 348-435 853-956 (1623)
474 cd03264 ABC_drug_resistance_li 90.9 0.13 2.8E-06 50.6 2.0 28 344-372 23-50 (211)
475 PF01745 IPT: Isopentenyl tran 90.8 0.18 3.8E-06 49.0 2.7 30 350-379 4-33 (233)
476 cd04155 Arl3 Arl3 subfamily. 90.8 0.13 2.8E-06 48.5 1.9 24 347-370 14-37 (173)
477 PRK14738 gmk guanylate kinase; 90.8 0.14 3.1E-06 50.2 2.2 25 348-372 14-38 (206)
478 cd03301 ABC_MalK_N The N-termi 90.8 0.14 3E-06 50.5 2.0 29 344-372 23-51 (213)
479 PF00025 Arf: ADP-ribosylation 90.7 0.61 1.3E-05 44.4 6.4 24 346-369 13-36 (175)
480 TIGR02315 ABC_phnC phosphonate 90.7 0.14 3E-06 51.6 2.0 29 344-372 25-53 (243)
481 PRK13975 thymidylate kinase; P 90.7 0.16 3.4E-06 49.3 2.3 25 349-373 4-28 (196)
482 PF01057 Parvo_NS1: Parvovirus 90.7 0.24 5.3E-06 50.5 3.7 95 348-462 114-209 (271)
483 cd04119 RJL RJL (RabJ-Like) su 90.7 0.15 3.2E-06 47.5 2.1 22 349-370 2-23 (168)
484 cd03282 ABC_MSH4_euk MutS4 hom 90.6 0.43 9.4E-06 46.7 5.4 23 348-370 30-52 (204)
485 PRK05537 bifunctional sulfate 90.6 0.27 5.8E-06 55.9 4.4 52 312-373 367-418 (568)
486 TIGR03608 L_ocin_972_ABC putat 90.6 0.15 3.2E-06 49.9 2.1 28 345-372 22-49 (206)
487 PF08303 tRNA_lig_kinase: tRNA 90.6 0.67 1.5E-05 43.2 6.1 73 353-436 5-80 (168)
488 TIGR00231 small_GTP small GTP- 90.5 0.15 3.3E-06 46.4 2.0 23 348-370 2-24 (161)
489 PF00625 Guanylate_kin: Guanyl 90.5 0.21 4.5E-06 48.0 3.0 28 348-375 3-30 (183)
490 smart00487 DEXDc DEAD-like hel 90.5 0.96 2.1E-05 42.9 7.7 24 348-371 25-49 (201)
491 smart00072 GuKc Guanylate kina 90.5 0.22 4.8E-06 47.9 3.2 28 348-375 3-30 (184)
492 smart00175 RAB Rab subfamily o 90.5 0.15 3.4E-06 47.3 2.0 22 349-370 2-23 (164)
493 cd03263 ABC_subfamily_A The AB 90.4 0.15 3.3E-06 50.4 2.0 29 344-372 25-53 (220)
494 TIGR03410 urea_trans_UrtE urea 90.4 0.15 3.2E-06 50.9 1.9 29 344-372 23-51 (230)
495 cd03262 ABC_HisP_GlnQ_permease 90.4 0.16 3.4E-06 50.0 2.1 28 345-372 24-51 (213)
496 TIGR01166 cbiO cobalt transpor 90.4 0.15 3.3E-06 49.2 2.0 29 344-372 15-43 (190)
497 cd04160 Arfrp1 Arfrp1 subfamil 90.4 0.16 3.4E-06 47.5 2.0 22 349-370 1-22 (167)
498 PRK14722 flhF flagellar biosyn 90.4 0.32 7E-06 52.0 4.5 27 344-370 134-160 (374)
499 cd02028 UMPK_like Uridine mono 90.3 0.18 3.8E-06 48.4 2.3 23 350-372 2-24 (179)
500 cd04156 ARLTS1 ARLTS1 subfamil 90.3 0.15 3.3E-06 47.3 1.8 22 349-370 1-22 (160)
No 1
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=100.00 E-value=9.1e-109 Score=866.04 Aligned_cols=578 Identities=36% Similarity=0.532 Sum_probs=491.7
Q ss_pred HHHHHHHHHHhHHHH-----HHhhcCCCCCCceeEEEechhhcc-cCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhh
Q 006051 11 KALAEFVIRHHSDQL-----RSITLSPDPKLHYPLYIDFAELLD-EDPEIAHLVFSKPADYLRFFEDAAIWAHKIVFDEL 84 (663)
Q Consensus 11 ~~f~~Fl~~~~~~~i-----~~~~~~~~~~~~~~l~Vd~~~L~~-~dp~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~~ 84 (663)
+.|.+||+.|+..+- +.+.. .+...+.+|.||+.||.. +++.|+..|.++|.+++|++..|+..+... ..
T Consensus 27 e~~~~Fle~~~~~~~e~~~~~~i~~-~~~~~~~tl~vd~~~l~~~~~~~la~~l~~~~~r~~p~m~~av~~~l~d-~~-- 102 (764)
T KOG0480|consen 27 EEFLQFLESFKVQAGEKKYLQSIEL-LDRPERNTLLVDFQHLSKQYNQNLATALEENYYRVLPCMCRAVHKVLKD-WS-- 102 (764)
T ss_pred HHHHHHHHHhhccccchhhHHHHHh-hccCCCceEEEEHHHHHhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHc-cc--
Confidence 458899888754211 11111 122245799999999999 999999999999999999999999876542 11
Q ss_pred hhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEeeEEEEecCceeEEEEEEEEecCCCCeeeecccc
Q 006051 85 KSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPEL 164 (663)
Q Consensus 85 ~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C~~C~~~~~~~~~~ 164 (663)
.......+.+++|++ |+|.. ..+|+|++..+|+||.|.|+|+|+|+|+|.+++++|.|..||..+.. +
T Consensus 103 --~~~~~~~~~~~v~f~------nlp~~-~~irdlra~~iG~Lv~isGtVvRts~VrPelt~~~F~C~~C~t~i~~---v 170 (764)
T KOG0480|consen 103 --TNSGALVKKIYVRFY------NLPTR-HKIRDLRAARIGKLVRISGTVVRTSPVRPELTKMTFLCEKCGTVIRN---V 170 (764)
T ss_pred --ccccccceeEEEEEe------ccccc-cccccccHhhhcceEEEEEEEEEeecccceeeeeEEEHhhCCCeecc---c
Confidence 112334556888888 45543 57999999999999999999999999999999999999999987543 3
Q ss_pred cccccccCCCCCCCCCCCCCCCC-ceEEecCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcccceeeCCEEEEE
Q 006051 165 ETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVT 243 (663)
Q Consensus 165 ~~~~~~~~p~~Cp~~~~~~C~~~-~f~~~~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~~pGd~V~v~ 243 (663)
++.++|+.|+.||+ ..|.++ .|.++.+++.|.|||+|||||..++.|.|.+||+++|+|++|+|++|+|||+|.+|
T Consensus 171 ~q~fkYt~Pt~C~n---p~C~nrr~f~l~~~~s~f~D~QkIrIQE~~~E~p~GsiPRtvdviLr~dlVe~~~pGD~v~~T 247 (764)
T KOG0480|consen 171 EQQFKYTEPTKCPN---PVCSNRRSFTLDRSSSRFLDWQKIRIQELQAEIPRGSIPRTVDVILRGDLVETAQPGDKVDIT 247 (764)
T ss_pred hhcCccCCCccCCC---ccccCCceeeeecccceeeeeeeeehhhhhhhCCCCCCCceeEEEEhhhhHhhcCCCCEEEEE
Confidence 56789999999997 478884 69999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecC------CCCcCc--cc----ccceEEEeeeeeeccccc--------c------------CCCCCHHHHHHHH
Q 006051 244 GILTAKWS------PDLKDV--RC----DLDPVLIANHVRRTNELK--------S------------DIDIPDDIIMQFK 291 (663)
Q Consensus 244 GIl~~~~~------~~~~~~--~~----~~~~~~~a~~i~~~~~~~--------~------------~~~~~~~~~~~~~ 291 (663)
||+.+... ++.+.. ++ ..=+.++|++|...+... . ...++.++...+.
T Consensus 248 GiliVvpdv~~l~~pgsk~~n~r~~~~~~~i~~lkal~Vrdl~yq~aFlac~~~~~~~~ee~~~~~~~~~~s~~e~~~~~ 327 (764)
T KOG0480|consen 248 GILIVVPDVSQLGGPGSKAENNRGGETGDGITGLKALGVRDLTYQLAFLACHVQSTLAVEEDDEEDMLNSMSSEEFAEIR 327 (764)
T ss_pred EEEEEecChHHhcCCccccccccCCCcccceeeehhcccccchhhhhHhhhhcccccccchhhhHHHhhhccHHHHHHHH
Confidence 99987552 111111 11 223456777776443320 0 0123333333333
Q ss_pred HHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc
Q 006051 292 QFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+. .. ++ +.|..|+.|+||.||||+.+|.+|+|+|+||+.+...+|.++||++|||++|+|||||||++++++..+
T Consensus 328 em---~~-~~-nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fs 402 (764)
T KOG0480|consen 328 EM---SK-DE-NLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFS 402 (764)
T ss_pred HH---hc-Cc-hHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccC
Confidence 22 12 22 357899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEeCCCcccCCceEEEeecC--chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeec
Q 006051 372 NRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTL 449 (663)
Q Consensus 372 ~~~~~~~~~~~~~~gl~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~ 449 (663)
||++|++|..++.+|||++.+++. |++.++||++++||+|||||||||+|...++.+|||+||||+|+|+|+|..+++
T Consensus 403 PR~vYtsGkaSSaAGLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 403 PRSVYTSGKASSAAGLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred CcceEecCcccccccceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEee
Confidence 999999999999999999999987 899999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCH
Q 006051 450 STRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPL 528 (663)
Q Consensus 450 ~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 528 (663)
|+|++||||+||. |+||..+++++|+++++|++|||||+|++.|.+++..|..+++||++.|..-... -.....|+.
T Consensus 483 nARtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~--~~~~~~~~~ 560 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDA--TERVCVYTL 560 (764)
T ss_pred cchhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhcccccc--ccccccccH
Confidence 9999999999997 9999999999999999999999999999999999999999999999998652211 111247999
Q ss_pred HHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcc-c---CCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHH
Q 006051 529 AMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSA-T---QNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITA 604 (663)
Q Consensus 529 ~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~-~---~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~A 604 (663)
+.+++||.||| +++|.++.+|.+.|.++|..+|... . .++|++|+||||+|||||+|.||++++++||++||.+|
T Consensus 561 e~vrkYi~yAR-~~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea 639 (764)
T KOG0480|consen 561 EQVRKYIRYAR-NFKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEA 639 (764)
T ss_pred HHHHHHHHHHH-hcCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHH
Confidence 99999999999 8999999999999999999999865 2 34899999999999999999999999999999999999
Q ss_pred HHHHHhhhhhh
Q 006051 605 ILCIESSMTTS 615 (663)
Q Consensus 605 i~l~~~s~~~~ 615 (663)
++|+..|+-..
T Consensus 640 ~eLlk~Siv~v 650 (764)
T KOG0480|consen 640 VELLKKSIVRV 650 (764)
T ss_pred HHHHHhhheee
Confidence 99999998553
No 2
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=100.00 E-value=7.7e-106 Score=882.43 Aligned_cols=561 Identities=39% Similarity=0.608 Sum_probs=495.8
Q ss_pred eEEEechhhcccCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCccccc
Q 006051 39 PLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGR 118 (663)
Q Consensus 39 ~l~Vd~~~L~~~dp~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~ 118 (663)
++.||+.|+..++++|+..|+++|.+++++|++|+.++....+.+. ......+|+||. + +|. ..++|+
T Consensus 32 s~~v~~~~~~~~~~~la~~l~~~p~~~i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~----~~~-~~~iR~ 99 (682)
T COG1241 32 SLEVDLSDLEEYDPELAGLLLENPEEIIPLFEKALDEIALLLFPEV-----DRSLKKIHVRFK--N----LPN-RLSIRE 99 (682)
T ss_pred EEEEEhHHhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHhcCccc-----cccccceEEEec--C----CcC-CcChhh
Confidence 8999999999999999999999999999999999998876433221 112256888887 3 343 337999
Q ss_pred ccccCCCcEEEEeeEEEEecCceeEEEEEEEEecCCCCeeeecccccccccccCCCCCCCCCCCCCCCCceEEecCeeeE
Q 006051 119 VRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGTNFQFVENSIIC 198 (663)
Q Consensus 119 l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~~f~~~~~~s~~ 198 (663)
|++.++||||+|+|+|+|+|.|+|..++++|.|++||+.+.+... ...+..|..||+| ... +..+|.++.+.|.|
T Consensus 100 l~s~~igkLV~v~GiV~r~s~v~p~~~~~~~~C~~Cg~~~~~~~~---~~~~~~~~~C~~~-~~~-~~~~~~~~~~~s~f 174 (682)
T COG1241 100 LRSEHIGKLVSVEGIVTRASEVRPRLKKAVFECPKCGREVEVEQS---EFRVEPPRECENC-GKF-GKGPLKLVPRKSEF 174 (682)
T ss_pred CchhhCCcEEEEEEEEEecccccceeEEEEEEcCCCCCEEEEEec---cccccCCccCCCc-ccc-CCCceEEecCccee
Confidence 999999999999999999999999999999999999999876532 3446778889864 111 34469999999999
Q ss_pred eeeeEEEEeecccccCCCCcceEEEEEEecCcccceeeCCEEEEEEEEeeecC-CC-CcCcccccceEEEeeeeeecccc
Q 006051 199 HDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVTGILTAKWS-PD-LKDVRCDLDPVLIANHVRRTNEL 276 (663)
Q Consensus 199 ~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~~pGd~V~v~GIl~~~~~-~~-~~~~~~~~~~~~~a~~i~~~~~~ 276 (663)
+|||+|+|||.|+.+|+|++||+++|+|++|||++++|||+|.||||++..+. .. .......++++++|+++.+.+..
T Consensus 175 ~d~Q~vkiQE~pe~~p~g~~Prs~~vil~~dlv~~~~pGdrV~itGi~~~~~~~~~~~~~~~~~~~~~~~a~~v~~~~~~ 254 (682)
T COG1241 175 IDFQKVKIQELPELVPGGELPRSIEVILEDDLVDSVRPGDRVKITGVVRIVPSRSLSGRRKGPVFEIYLEANSVEKLDKR 254 (682)
T ss_pred eeceEEEEecCcccCCCCCCCceEEEEEecCcccccCCCCEEEEEEEEecccccccccccCCceEEEEEEEEEEEeccch
Confidence 99999999999999999999999999999999999999999999999998773 21 12334568999999999986655
Q ss_pred ccCCCCCHHHHHHHHHHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCC
Q 006051 277 KSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDP 356 (663)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~p 356 (663)
....+++++.++|.++.+. + ..++.+++|++|+|||++.+|+||+|+|+||+.+..++|.++||++||||+|+|
T Consensus 255 -~~~~~t~ed~e~i~elak~----~-~i~~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDP 328 (682)
T COG1241 255 -EEVEITEEDEEEIKELAKR----P-DIYDILIKSIAPSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDP 328 (682)
T ss_pred -hhccCCHHHHHHHHHHhcC----C-cHHHHHHHHhcccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCC
Confidence 5677899999999887643 2 357899999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC--chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHH
Q 006051 357 GTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAME 434 (663)
Q Consensus 357 GtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me 434 (663)
|||||+|++++++++|+++|++|.+++++|||++..++. |+|++++|++++||+|||||||||+|+..++.+||++||
T Consensus 329 gtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaME 408 (682)
T COG1241 329 GTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAME 408 (682)
T ss_pred chhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHH
Confidence 999999999999999999999999999999999999986 689999999999999999999999999999999999999
Q ss_pred hceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCC
Q 006051 435 QQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGL 513 (663)
Q Consensus 435 ~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~ 513 (663)
||+|+++|+|+.+++|++|+|+||+||. |+||++++..+|++++++|+||||++|.+.|.++++.|+.+++|+++.|..
T Consensus 409 QQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~ 488 (682)
T COG1241 409 QQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRG 488 (682)
T ss_pred hcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhc
Confidence 9999999999999999999999999998 999999999999999999999999999999999999999999999999964
Q ss_pred CCCCCCC---C--CCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcc----cCCCccccHhHHHHHHHHH
Q 006051 514 SEEKDTE---P--LTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSA----TQNAARTTVRMLESLIRLA 584 (663)
Q Consensus 514 ~~~~~~~---~--~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~----~~~~~~~t~R~Le~lirla 584 (663)
....... . ....=+.++|++||.|||+++.|.+|++|.+.|.+||+.+|+.. ..++.|+|+||||++||||
T Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLa 568 (682)
T COG1241 489 EEPEETISLDGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLA 568 (682)
T ss_pred cccccccccccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHH
Confidence 3221110 0 00001678999999999999999999999999999999999854 3457899999999999999
Q ss_pred HHHHhccCCCccChhhHHHHHHHHHhhhhhhhhhhhhH
Q 006051 585 QAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVG 622 (663)
Q Consensus 585 ~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~~~~~~ 622 (663)
+|||||++++.|+++||.+|++|++.|+.+.+..+..|
T Consensus 569 eA~Ak~rLS~~V~~eD~~eAi~lv~~~l~~v~~dp~~g 606 (682)
T COG1241 569 EAHAKMRLSDVVEEEDVDEAIRLVDFSLKTVAVDPEKG 606 (682)
T ss_pred HHHHhhhccCCCCHHHHHHHHHHHHHHHHHhhcCccCC
Confidence 99999999999999999999999999999977665444
No 3
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=100.00 E-value=2.2e-105 Score=818.80 Aligned_cols=622 Identities=31% Similarity=0.453 Sum_probs=532.2
Q ss_pred hHHHHHHHHHHHHHH-------hHHHHHHhhcCCCCCCceeEEEechhhcccCHHHHHHHHhChHHHHHHHHHHHHHHHH
Q 006051 6 VPAHLKALAEFVIRH-------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHK 78 (663)
Q Consensus 6 ~~~~~~~f~~Fl~~~-------~~~~i~~~~~~~~~~~~~~l~Vd~~~L~~~dp~La~~l~~~P~~~l~~~~~a~~~~~~ 78 (663)
.....++|++|++.| |+++++..+.. ..|+|+|+++||..||.+|+..|...|.++||+|++|+.++.+
T Consensus 25 ~~~v~~~fkefir~f~~~~~f~Yrd~L~~N~~~----~~y~L~v~le~L~~fdedl~~~L~~~P~~~lp~fEeAa~~Vad 100 (729)
T KOG0481|consen 25 KSQVKTKFKEFIRQFRTGTDFKYRDQLKRNYNL----GEYSLEVELEDLISFDEDLADKLSKQPADHLPLFEEAAKEVAD 100 (729)
T ss_pred HHHHHHHHHHHHHHhccccccchHHHHHhcccc----cceEEEEEHHHhhccchHHHHHHHhChHhHHHHHHHHHHHHHh
Confidence 345567799999987 88888876553 5789999999999999999999999999999999999998876
Q ss_pred HHhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEeeEEEEecCceeEEEEEEEEecCCCCee
Q 006051 79 IVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMF 158 (663)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C~~C~~~~ 158 (663)
..-...+.. ......+++-+.. ..+..++|++++.+++|||.|.|+|+.+|.|+.+.+.....|.+|.+..
T Consensus 101 ~i~~~~~~~--E~~~~d~Qv~L~s-------da~p~~iR~l~s~~vsklVki~GIiiaAS~v~~kat~l~l~CrnC~~t~ 171 (729)
T KOG0481|consen 101 EITRPRPSG--EEVLHDIQVLLTS-------DANPISIRQLKSDHVSKLVKISGIIIAASAVSAKATRLSLVCRNCRHTR 171 (729)
T ss_pred hhcCCCcCC--CccceeeEEEEec-------CCCcccHhHhhhHhhhhheeeccEEEEeeeeeecceEEEEEeccccccc
Confidence 321111111 1122235555542 2455679999999999999999999999999999999999999999875
Q ss_pred eec---ccccccccccCCCCCCCC--CCCCCCCCceEEecCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcccc
Q 006051 159 PVY---PELETRNSIVLPSHCPSQ--RSKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDI 233 (663)
Q Consensus 159 ~~~---~~~~~~~~~~~p~~Cp~~--~~~~C~~~~f~~~~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~ 233 (663)
... +++ ..+..|+.|.++ ..+.|+-.+|.+.+++|.|+|+|.+|+||.|+.+|.|++||++.+.+++.|+++
T Consensus 172 ~~~~~~pgl---~g~~lPR~C~~~~~~k~~Cp~DPyii~pdks~~vD~QtLKLQE~pe~VP~GE~PRhl~L~~dRyL~~k 248 (729)
T KOG0481|consen 172 PNVIMRPGL---EGYALPRKCDTPQAGKPKCPLDPYIIMPDKSKCVDQQTLKLQELPEDVPVGEMPRHLQLFCDRYLTNK 248 (729)
T ss_pred cceecCCCc---cccccccccCCcccCCCCCCCCCEEEcccccceeehhheehhhCcccCCcCcCcchhhhhhhHHHhcc
Confidence 322 332 357889999643 257899999999999999999999999999999999999999999999999999
Q ss_pred eeeCCEEEEEEEEeeecCCCCcC----cccccceEEEeeeeeeccccc---cCCCCCHHHHHHHHHHHHhhcCCchhhHH
Q 006051 234 VKAGDDVIVTGILTAKWSPDLKD----VRCDLDPVLIANHVRRTNELK---SDIDIPDDIIMQFKQFWSEFKDTPLKGRN 306 (663)
Q Consensus 234 ~~pGd~V~v~GIl~~~~~~~~~~----~~~~~~~~~~a~~i~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (663)
+.||.+|+|+|||.++......+ .-+.-..|+.+..|+...... .-..+|+++.++|+++... + +.|+
T Consensus 249 vvPG~RvtI~GIYsI~~~~~~~~s~k~~v~iR~PyirVvGi~~ds~~ss~~~~~~ft~eEEEeFk~la~~----~-d~Ye 323 (729)
T KOG0481|consen 249 VVPGNRVTIMGIYSIKKFGSTSSSDKSGVGIRTPYIRVVGIQDDSEGSSRSSATMFTPEEEEEFKKLAAS----P-DVYE 323 (729)
T ss_pred ccCCceEEEEEEEEeeeccccCCCCccceeeecceEEEEEEEeccCCccccCcccCChhHHHHHHHHhcC----c-cHHH
Confidence 99999999999999864322111 111235677777877543322 2346889999999888643 2 3689
Q ss_pred HHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCC
Q 006051 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAG 386 (663)
Q Consensus 307 ~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~g 386 (663)
.|.+||+|+|||++++|+|+.+.||||.++.+++|..+||++||||.|+|||+||||++++.+.+|-++|++|.|++.+|
T Consensus 324 ~is~sIAPSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAG 403 (729)
T KOG0481|consen 324 RISKSIAPSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAG 403 (729)
T ss_pred HHhhccCchhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeecC--chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-C
Q 006051 387 LTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-G 463 (663)
Q Consensus 387 l~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g 463 (663)
||++..++. .++.++.|++++||||||||||||+|.++++.++|++||||+|+|+|+|+.+.+|.+|+|+||+||. |
T Consensus 404 LTASV~RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfG 483 (729)
T KOG0481|consen 404 LTASVIRDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFG 483 (729)
T ss_pred ceeeEEecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccc
Confidence 999999998 5899999999999999999999999999999999999999999999999999999999999999998 9
Q ss_pred CCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCC---CCCCCCCCCHHHHHHHHHHHHc
Q 006051 464 HYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKD---TEPLTDIWPLAMLRRYIYFVKG 540 (663)
Q Consensus 464 ~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~~r~ 540 (663)
+||..++...|+.+.+.++||||+||++.|..+++.|..+++|+++.|....... .....+.++.+.+++||.|||.
T Consensus 484 RyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~YcR~ 563 (729)
T KOG0481|consen 484 RYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQYCRL 563 (729)
T ss_pred cccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998632221 2225567999999999999999
Q ss_pred cCCCccCHHHHHHHHHHHHHHHhcc--------cCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 541 YFKPILTKEAEKVISSYYQLQRRSA--------TQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 541 ~~~p~ls~ea~~~l~~~y~~~r~~~--------~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
++.|.||++|.+.|..+|+.+|+.- .++++|+|+||||++||++++.|||+|+..+|+.||.+|++|+..|.
T Consensus 564 kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF~vST 643 (729)
T KOG0481|consen 564 KCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLFQVST 643 (729)
T ss_pred ccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHHhHhh
Confidence 9999999999999999999998742 34579999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhHhhhhhcCCC-ChhHHHHHHHHHHHHHhcc
Q 006051 613 TTSAIVDSVGNALHSNFTE-NPDLENAKQEKLILDKLRS 650 (663)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 650 (663)
.+.+..+.. +...+|.. +--++++++|.++.++++.
T Consensus 644 mdAa~~g~l--~g~egf~s~e~~e~i~rie~qlkrr~~I 680 (729)
T KOG0481|consen 644 MDAASQGTL--AGVEGFTSPEDQEEIKRIEKQLKRRFAI 680 (729)
T ss_pred HHHHhcCch--hcccccCCHHHHHHHHHHHHHHHHhccc
Confidence 887754432 22234433 3334589999999999843
No 4
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=100.00 E-value=7e-103 Score=810.78 Aligned_cols=586 Identities=31% Similarity=0.445 Sum_probs=512.4
Q ss_pred hHHHHHHHHHHHHHH-----hHHHHHHhhcCCCCCCceeEEEechhhcccCHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Q 006051 6 VPAHLKALAEFVIRH-----HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIV 80 (663)
Q Consensus 6 ~~~~~~~f~~Fl~~~-----~~~~i~~~~~~~~~~~~~~l~Vd~~~L~~~dp~La~~l~~~P~~~l~~~~~a~~~~~~~~ 80 (663)
..+..+.|.+||.++ |.+.|..++.. .+..|.||++||..|++++|..|+.+|.++++.|++|+.++....
T Consensus 10 ~~e~~r~f~efLd~~~D~~iy~e~i~~~~~~----~~~RlIvNv~dlr~~~~~~A~glL~~p~~~~~~f~~AL~~~~~~~ 85 (818)
T KOG0479|consen 10 FRERVRDFIEFLDDEEDADIYQEAIKKLLNE----GQHRLIVNVDDLREFNRERASGLLENPAEEVPPFEDALTDAASRI 85 (818)
T ss_pred HHHHHHHHHHHhcchhhhhHHHHHHHHhhhc----CcceEEEEhHHHHHhHHHHHHhHhhChHhhhhhHHHHHHHHHhcc
Confidence 345556799999984 67778888764 467899999999999999999999999999999999999876531
Q ss_pred hhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEeeEEEEecCceeEEEEEEEEecCCCCeee-
Q 006051 81 FDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFP- 159 (663)
Q Consensus 81 ~~~~~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C~~C~~~~~- 159 (663)
-+ .+...+..++|-|. |+. -..+.++|.|.+.++|++|+++|||+++|-|+|++.+.++.|+..+....
T Consensus 86 d~-----~~~~~~~~~~vGfe--GsF---G~~hv~PRtL~s~~lg~mVcvEGIVTkcSlvRPKvvkSVHYcpaT~~~~~r 155 (818)
T KOG0479|consen 86 DD-----VYAKVKELFFVGFE--GSF---GNRHVNPRTLTSVYLGKMVCVEGIVTKCSLVRPKVVKSVHYCPATNKFHER 155 (818)
T ss_pred cc-----hhhhhccceEEEee--eec---cccccChhhHHHHHhCceEEeeeeeeeeeeechhhhheeeeccccCcchhh
Confidence 11 12334445666554 543 35678899999999999999999999999999999999999999987643
Q ss_pred ecccccccccccCCCCCCCCCCCCCCCCceEEecCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcccceeeCCE
Q 006051 160 VYPELETRNSIVLPSHCPSQRSKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDD 239 (663)
Q Consensus 160 ~~~~~~~~~~~~~p~~Cp~~~~~~C~~~~f~~~~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~~pGd~ 239 (663)
-+.++.....+..+...|. +.-+++++....+.|.|.|+|.|.|||+||..|+|++||+++|+|++||||.|+||||
T Consensus 156 ~Y~D~T~~~~~p~~svYPT---~De~gN~L~TEyGlS~ykDHQtitiQEmPE~APaGQLPRSVDvilddDLVD~~KPGDR 232 (818)
T KOG0479|consen 156 DYRDATMLTTLPTGSVYPT---RDEDGNLLETEYGLSVYKDHQTITIQEMPEKAPAGQLPRSVDVILDDDLVDRVKPGDR 232 (818)
T ss_pred hhcchheecccccCCcCCc---cCCCCCeeeEeecceeeecccEEEeeeccccCCCCCCCcceeEEecccccccCCCCCe
Confidence 2345444344444445553 4566778999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEeeecCCCCcCcccccceEEEeeeeeeccccccCCCCCHHHHHHHHHHHHhhcCCchhhHHHHhhccccccCch
Q 006051 240 VIVTGILTAKWSPDLKDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGL 319 (663)
Q Consensus 240 V~v~GIl~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~i~G~ 319 (663)
|.|+|||+.-..+...+..+.|.+++.||||...++. ....++.+++.+|+++.++ ++ .++.|++|++|+||||
T Consensus 233 V~ivG~yr~Lp~k~~g~tsg~FRTvliaNni~~l~ke-~~~~~t~~Di~~i~klsk~--kd---iFdlLa~SLAPSI~GH 306 (818)
T KOG0479|consen 233 VNIVGIYRSLPGKSNGNTSGTFRTVLIANNIELLSKE-AAPDFTDEDIRNIKKLSKK--KD---IFDLLARSLAPSIYGH 306 (818)
T ss_pred eEEEEEEeeccCccCCcccceeEEEEEeccHHhhccc-ccccCChhhHHHHHHHHhc--CC---HHHHHhhccCcccccH
Confidence 9999999987655444556679999999999876665 3678999999999999763 34 4589999999999999
Q ss_pred hHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC--ch
Q 006051 320 FTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GE 397 (663)
Q Consensus 320 ~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~--~~ 397 (663)
+.+|+||+|.|.||+++..++|.++||++||||+|+|.|+||||+|++.+.+|+++-++|.|+++.|||++...+. |+
T Consensus 307 ~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVTtD~eTGE 386 (818)
T KOG0479|consen 307 DYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVTTDQETGE 386 (818)
T ss_pred HHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEeeccccch
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999988765 99
Q ss_pred hHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccC
Q 006051 398 WMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTT 476 (663)
Q Consensus 398 ~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~ 476 (663)
..+++|++++|++||+||||||+|+.-++.++|++||||+++|+|+|+.+++|++|+|+||+||. |+||..+...+|+.
T Consensus 387 RRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIg 466 (818)
T KOG0479|consen 387 RRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIG 466 (818)
T ss_pred hhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCCChhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999997 99999999999999
Q ss_pred CChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCC--------C--------C---------------------
Q 006051 477 LSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEK--------D--------T--------------------- 519 (663)
Q Consensus 477 l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~--------~--------~--------------------- 519 (663)
|+.+|++||||+|++.|..+.+.|+.++.|+++.|...... . .
T Consensus 467 LpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~e~~~et~v~ek~n~llhg 546 (818)
T KOG0479|consen 467 LPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENMEDKKETEVFEKFNTLLHG 546 (818)
T ss_pred CcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccccccccchhHhhhhhhhhc
Confidence 99999999999999999999999999999999988431000 0 0
Q ss_pred ---CCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhccc----CCCccccHhHHHHHHHHHHHHHhccC
Q 006051 520 ---EPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSAT----QNAARTTVRMLESLIRLAQAHARLMF 592 (663)
Q Consensus 520 ---~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~----~~~~~~t~R~Le~lirla~a~A~l~~ 592 (663)
......++.+++|+||.|||..+.|+|+++|.++|.+.|..+|.... ....|+|.|+||+|||||.||||+++
T Consensus 547 ~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTARtLETlIRLaTAhAKaRl 626 (818)
T KOG0479|consen 547 KAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITARTLETLIRLATAHAKARL 626 (818)
T ss_pred cccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcHHHHHHHHHHHHHHHHhhh
Confidence 11235678899999999999989999999999999999999998764 34679999999999999999999999
Q ss_pred CCccChhhHHHHHHHHHhhhhh
Q 006051 593 RNEVTRLDAITAILCIESSMTT 614 (663)
Q Consensus 593 ~~~V~~~Dv~~Ai~l~~~s~~~ 614 (663)
+++|+..|+..|+.|+..++..
T Consensus 627 Sk~V~~~DAe~A~~Ll~fA~f~ 648 (818)
T KOG0479|consen 627 SKVVEKDDAEAAVNLLRFALFK 648 (818)
T ss_pred cceeehhhHHHHHHHHHHHHHh
Confidence 9999999999999999888766
No 5
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=100.00 E-value=4.5e-101 Score=861.38 Aligned_cols=621 Identities=27% Similarity=0.386 Sum_probs=509.6
Q ss_pred HHHHHHHHHHHHHH-----------------------hHHHHHHhhcCC-------CCCCceeEEEechhhcccCHHHHH
Q 006051 7 PAHLKALAEFVIRH-----------------------HSDQLRSITLSP-------DPKLHYPLYIDFAELLDEDPEIAH 56 (663)
Q Consensus 7 ~~~~~~f~~Fl~~~-----------------------~~~~i~~~~~~~-------~~~~~~~l~Vd~~~L~~~dp~La~ 56 (663)
.+..++|-+||++| |...|.+++..+ ++ ...+|.||+.||..|||.|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~-~~~sl~Vd~~~l~~fd~~L~~ 164 (915)
T PTZ00111 86 EELSERFTNFLKNFTEFSDVLEFKDEQQSKPEYTELYYLWKLMNFIKENLRDHSTGYS-RILPFEVDLMHVYSFDKVLYK 164 (915)
T ss_pred HHHHHHHHHHHHHhhhhccccccchhhhhhhhhhHHHHHHHHHHHHHHhhhccccccc-CCceEEEEHHHHHhhhHHHHH
Confidence 34446688888875 556677776542 12 245899999999999999999
Q ss_pred HHHhChHHHHHHHHHHHHHHHHHHhhhhhhh-hhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEeeEEE
Q 006051 57 LVFSKPADYLRFFEDAAIWAHKIVFDELKSC-EKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVI 135 (663)
Q Consensus 57 ~l~~~P~~~l~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G~V~ 135 (663)
+|+++|.+++++|++|+.++....+...... ........++||++ + +| ...++|+|+++++||||+|+|+|+
T Consensus 165 ~l~~~P~e~i~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~vr~~--n----~~-~~~~iR~L~s~~i~kLV~v~GiV~ 237 (915)
T PTZ00111 165 LLVTFPADCIAELDKVLVKLFNELLSKHYSDLSLENNSFFPRARLM--N----KP-VSDCVGNLEPSMADSLVQFSGTVV 237 (915)
T ss_pred HHHHCHHHHHHHHHHHHHHHHHHHhhcccccchhccccceEEEEEe--C----CC-CCCCcccCCHhhCCCeEEEEEEEE
Confidence 9999999999999999988755322211100 00111124688887 2 33 235789999999999999999999
Q ss_pred EecCceeEEEEEEEEecC-----------CCCeeeecccccccccccCCCCCCCCCCCCCCCC-ceEEecCeeeEeeeeE
Q 006051 136 RSGATKMYEGERTYMCRK-----------CKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQE 203 (663)
Q Consensus 136 r~s~vk~~~~~~~f~C~~-----------C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~-~f~~~~~~s~~~d~Q~ 203 (663)
|+|.|+|.++.++|+|.. |++...+. ...+.+..|..|| .|++. +|.++.+.|.|+|||+
T Consensus 238 r~S~v~P~l~~a~f~C~~~~~~~~~~~~~C~~~~~~~---~~~g~~~~P~~C~-----~C~~~~~f~l~~~~s~f~D~Q~ 309 (915)
T PTZ00111 238 RQTWIVPEITMACFRCRGQKKIGLNDYQPCTCEHYEY---VIQGEVNEPLLCN-----ECNSKYTFELNHNMCVYSTKKI 309 (915)
T ss_pred EccCcchhhEEEEEECCCCCcccCCccccCCcccccc---ccCCcccCCCCCC-----CCCCCCCeEEccCccEEEeeeE
Confidence 999999999999999996 66443221 1235677899997 48866 5999999999999999
Q ss_pred EEEeecccccCCCCcc--------------------eEEEEEEecCcccceeeCCEEEEEEEEeeecCCCC---cCcccc
Q 006051 204 IKIQESTQVLGVGVIP--------------------RSILVILKDDLVDIVKAGDDVIVTGILTAKWSPDL---KDVRCD 260 (663)
Q Consensus 204 ikiQE~~~~~~~g~~P--------------------rsi~V~L~~dLv~~~~pGd~V~v~GIl~~~~~~~~---~~~~~~ 260 (663)
|+|||.|+.+|.|++| |+++|+|++||||+|+|||+|+||||++..+.... ......
T Consensus 310 IklQE~pe~vp~G~~P~~~~~~~~~~~~~~~~~~~~rsi~v~l~dDLVD~v~PGDrV~VtGIl~~~~~~~~~~~~~~~~~ 389 (915)
T PTZ00111 310 VKLLQSNSSLNNPDKDGLDNSVDNSGLNGEIYMKDNEVINLNLYDDLIDSVKTGDRVTVVGILKVTPIRTSTTRRTLKSL 389 (915)
T ss_pred EEEeeCcccCCCCCCCccccccccccccccccccCCceEEEEEecchhccCCCCCEEEEEEEEEeccccccccccccccc
Confidence 9999999999999999 99999999999999999999999999998653221 123356
Q ss_pred cceEEEeeeeeecccc------------ccCCCCCHHHHHHHHHHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHH
Q 006051 261 LDPVLIANHVRRTNEL------------KSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVAL 328 (663)
Q Consensus 261 ~~~~~~a~~i~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill 328 (663)
|++++.+++|+..+.. .....+++++++.|+++.+ .+ ..++.|++||||.|+|++.+|+||+|
T Consensus 390 ~~~yl~~~~i~~~~~~~~~~~~~~~~~~~~~~~~t~ed~~~I~~ls~----~p-~i~~~L~~SiaP~I~G~e~vK~ailL 464 (915)
T PTZ00111 390 YTYFVNVIHVKVINSTNANQPEKGLKYLGNENDFSDLQVYKILELSR----NP-MIYRILLDSFAPSIKARNNVKIGLLC 464 (915)
T ss_pred cceEEEEEEEEEeccccccccccccccccccccCCHHHHHHHHHHhc----CH-HHHHHHHHHhCCeEECCHHHHHHHHH
Confidence 8999999999864321 1234689999999988754 33 36789999999999999999999999
Q ss_pred HHhCCceeecC-----CC----CccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe-ec--Cc
Q 006051 329 TLIGGVQHVDA-----SG----TKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV-KD--GG 396 (663)
Q Consensus 329 ~l~~g~~~~~~-----~~----~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~-~~--~~ 396 (663)
+|+||+.+... +| .++|+++||||+|+||||||++|+++++++++..+++|.+.+..|+++... ++ .|
T Consensus 465 ~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG 544 (915)
T PTZ00111 465 QLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNG 544 (915)
T ss_pred HHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccC
Confidence 99999976433 33 789999999999999999999999999999999999999999999988765 33 37
Q ss_pred hhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCcccccc
Q 006051 397 EWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNT 475 (663)
Q Consensus 397 ~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~ 475 (663)
+|.+++|++++|++|+||||||++|++..|.+|+++||+|++++.++|+..+++++|+||||+||. |+||+.+++..|+
T Consensus 545 ~~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni 624 (915)
T PTZ00111 545 RAMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENI 624 (915)
T ss_pred cccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCccccc
Confidence 899999999999999999999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred CCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCC----CCC------------------CCCCCCCCCHHHHHH
Q 006051 476 TLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSE----EKD------------------TEPLTDIWPLAMLRR 533 (663)
Q Consensus 476 ~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~----~~~------------------~~~~~~~~~~~~l~~ 533 (663)
+|+++|+||||++|.+.|.++++.|..++.||++.|.... ... .......++.+.|++
T Consensus 625 ~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrk 704 (915)
T PTZ00111 625 NISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRM 704 (915)
T ss_pred CCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHH
Confidence 9999999999999999999999999999999998753100 000 001124588999999
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhc-------------------------ccCCCccccHhHHHHHHHHHHHHH
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRS-------------------------ATQNAARTTVRMLESLIRLAQAHA 588 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~-------------------------~~~~~~~~t~R~Le~lirla~a~A 588 (663)
||+|||+++.|.||++|.+.|.+||+.+|+. ....+.++|+|+||+|||||+|||
T Consensus 705 YI~YAR~~~~P~Ls~eA~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~A 784 (915)
T PTZ00111 705 YIKFSKLHCFPKLSDEAKKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLA 784 (915)
T ss_pred HHHHHhccCCCCCCHHHHHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999973 112357899999999999999999
Q ss_pred hccCCCccChhhHHHHHHHHHhhhhhhhhhhhhHhh----hhhcCCCChhHHHHHHHHHHHHHh
Q 006051 589 RLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGNA----LHSNFTENPDLENAKQEKLILDKL 648 (663)
Q Consensus 589 ~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 648 (663)
||+|+++|+++||.+||+|++.|+.+.+..+.+|.. +.++...+..+.+..+.+.|.+.+
T Consensus 785 K~rLs~~Vt~~Dv~~Ai~L~~~sl~~~~~DpetG~iD~d~~~~G~s~~~r~~~~~~~~~i~~~~ 848 (915)
T PTZ00111 785 RMRLSTVVTPADALQAVQIVKSSTFQSLVDPTTGKIDFDQLHQGITTNKMQQLNQMYEQVLSVL 848 (915)
T ss_pred hhcCcCcccHHHHHHHHHHHHHHHhhhcccccCCcccceeeccCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998877666643 222333333344555555555544
No 6
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=100.00 E-value=9e-102 Score=819.20 Aligned_cols=586 Identities=32% Similarity=0.473 Sum_probs=513.2
Q ss_pred ChHHHHHHHHHHHHHH---------hHHHHHHhhcCCCCCCceeEEEechhhcccCHHHHHHHHhChHHHHHHHHHHHHH
Q 006051 5 NVPAHLKALAEFVIRH---------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIW 75 (663)
Q Consensus 5 ~~~~~~~~f~~Fl~~~---------~~~~i~~~~~~~~~~~~~~l~Vd~~~L~~~dp~La~~l~~~P~~~l~~~~~a~~~ 75 (663)
++++-.+.|++||.+| |...+.++..- ....+.+|..||..|+..|+..+..+|.++++.|+.++++
T Consensus 129 ~iqe~~~~F~~fl~rf~~~d~~~~~yi~~l~e~~~~----~~~~ln~~~~hl~~~~~~Ly~ql~~ypqevip~~d~t~~~ 204 (804)
T KOG0478|consen 129 NIQECPENFDDFLRRFRGIDPLCPYYIKSLLELKEL----EPEFLNLDAEHLTDFDMDLYRQLVVYPQEVIPIFDETANE 204 (804)
T ss_pred EHHhhhhHHHHHHHhcCCCCccchHHHHHHHHHHHh----hhhhhhhhhhccccccHHHHHhhhhchHhhcccchHHHHH
Confidence 5677888899999998 76666655321 1235789999999999999999999999999999999998
Q ss_pred HHHHHhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEeeEEEEecCceeEEEEEEEEecCCC
Q 006051 76 AHKIVFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCK 155 (663)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C~~C~ 155 (663)
+....+.. ....+.+.||.++. ....++|++++++|.|||+|+|+|+|+|++.|.++++.|+|..|+
T Consensus 205 ~~~e~~~~------~~~~~~i~vRPfn~-------~~~~smr~lNp~dIDkLisI~GmViRss~vipem~~afFrC~vC~ 271 (804)
T KOG0478|consen 205 IVLERYVL------EILEKSIKVRPFNA-------GKTFSMRNLNPNDIDKLISISGMVIRSSEVIPEMVEAFFRCSVCG 271 (804)
T ss_pred HHHhhccc------cchhceeEeeccCc-------ccccccccCChhhhhheEEeeeEEEecCCCCHHHHhHhhhhhhcC
Confidence 75533311 12334566776532 234579999999999999999999999999999999999999999
Q ss_pred CeeeecccccccccccCCCCCCCCCCCCCCCCc-eEEecCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcccce
Q 006051 156 HMFPVYPELETRNSIVLPSHCPSQRSKPCEGTN-FQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIV 234 (663)
Q Consensus 156 ~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~~-f~~~~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~ 234 (663)
+...+..+ ++.+..|..|+ .|+.++ |.++.+.|.|.|.|.||+||.|+.+|.|++|.+|.|++++||||++
T Consensus 272 ~~~~ve~d---rg~i~eP~~C~-----~C~~~~~~~Lihnrs~F~dkQviklqEspd~~p~g~tPhtv~v~~~~dLVD~v 343 (804)
T KOG0478|consen 272 HEIAVESD---RGRIKEPMLCK-----ECGTTNSFQLLHNRSEFADKQVIKLQESPDDMPEGSTPHTVSVVLHNDLVDKV 343 (804)
T ss_pred ceEEEEee---cCccCCCcccc-----cccCcccceeehhhhhhcccceeeeeeccccCcCCCCCceEEEEEehhhhhcc
Confidence 98776543 57889999996 587765 9999999999999999999999999999999999999999999999
Q ss_pred eeCCEEEEEEEEeeecCCCCc---CcccccceEEEeeeeeecccccc--------CCCCCHHHHHHHHHHHHhhcCCchh
Q 006051 235 KAGDDVIVTGILTAKWSPDLK---DVRCDLDPVLIANHVRRTNELKS--------DIDIPDDIIMQFKQFWSEFKDTPLK 303 (663)
Q Consensus 235 ~pGd~V~v~GIl~~~~~~~~~---~~~~~~~~~~~a~~i~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (663)
+|||+|.||||++..|-+... ..++.|.+|+.+.|+.+.+...- +..++.++.+.+..+.. .| .
T Consensus 344 ~pGDrv~VTGi~ra~p~r~np~~r~vkSvyktyldvvh~rk~s~~rl~~~d~~d~~~~~~~~~~e~i~elsk----rp-d 418 (804)
T KOG0478|consen 344 RPGDRVEVTGILRATPVRVNPRMRMVKSVYKTYLDVVHIRKASMKRLEGSDERDVDEVRRIEDLEKIQELSK----RP-D 418 (804)
T ss_pred CCCCeEEEEEEEEeEEeccCcchhhHHHHHHHHhHhhhhhhhhhhhccccccccccccccHHHHHHHHHHhc----Cc-c
Confidence 999999999999998754432 34457899999999986544211 12234444555555532 23 3
Q ss_pred hHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcc
Q 006051 304 GRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST 383 (663)
Q Consensus 304 ~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~ 383 (663)
+|+.|++||||+|||+|++|+|+||+||||+.+....+.++|+++||||+|+||||||++++++++++||++|++|.|++
T Consensus 419 iy~lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsS 498 (804)
T KOG0478|consen 419 IYELLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSS 498 (804)
T ss_pred HHHHHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccc
Confidence 68999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred cCCceEEEeecC--chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC
Q 006051 384 SAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 384 ~~gl~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
.+|||+.+.++. ++|+++.|+++++++|||||||||||+...++.|||+||||+++|+|+|+.+++|++++|+|++||
T Consensus 499 avGLTayVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP 578 (804)
T KOG0478|consen 499 AVGLTAYVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANP 578 (804)
T ss_pred hhcceeeEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeecc
Confidence 999999999965 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C-CCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHc
Q 006051 462 K-GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKG 540 (663)
Q Consensus 462 ~-g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~ 540 (663)
. ++|++++++.+|++|+++|+||||++|.+.|.+++..|+.++.||..++.... .......|+...|+.|++||++
T Consensus 579 ~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~HivsLy~e~~---~~~~~~~~d~~~lr~yi~yArk 655 (804)
T KOG0478|consen 579 IRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHIVALYPETG---EKQGSEAIDMNLLRDYIRYARK 655 (804)
T ss_pred ccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHHHHhccccc---ccchhHHHhHHHHHHHHHHHhc
Confidence 7 89999999999999999999999999999999999999999999999997643 2234567899999999999999
Q ss_pred cCCCccCHHHHHHHHHHHHHHHhcccCCC-ccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhhhhhh
Q 006051 541 YFKPILTKEAEKVISSYYQLQRRSATQNA-ARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVD 619 (663)
Q Consensus 541 ~~~p~ls~ea~~~l~~~y~~~r~~~~~~~-~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~~~ 619 (663)
++.|.+++||.+.+..+|+.+|+...... ...++||||+|+|+++|||++++++.|.+.||.+|+.|.+..+.+.+..+
T Consensus 656 ~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~rQlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~aL~~~a~d~ 735 (804)
T KOG0478|consen 656 NIHPALSPEASQALIQAYVDMRKIGEGAGQITATPRQLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREALKQSATDP 735 (804)
T ss_pred cCCccccHHHHHHHHHHhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHhcccCCCC
Confidence 99999999999999999999998765544 67799999999999999999999999999999999999999999998887
Q ss_pred hhHh
Q 006051 620 SVGN 623 (663)
Q Consensus 620 ~~~~ 623 (663)
.+|.
T Consensus 736 ~tg~ 739 (804)
T KOG0478|consen 736 ATGK 739 (804)
T ss_pred CCCc
Confidence 7663
No 7
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=100.00 E-value=9.1e-102 Score=791.50 Aligned_cols=587 Identities=32% Similarity=0.480 Sum_probs=496.0
Q ss_pred ChHHHHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhcccCH--HHHHHHHhChHHHHHHHHHHHH
Q 006051 5 NVPAHLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDP--EIAHLVFSKPADYLRFFEDAAI 74 (663)
Q Consensus 5 ~~~~~~~~f~~Fl~~~--------~~~~i~~~~~~~~~~~~~~l~Vd~~~L~~~dp--~La~~l~~~P~~~l~~~~~a~~ 74 (663)
+++...++.+.||.+| |.+++.++..+ ....+.||++||.+||. +|...|..|..+|..+|..|+.
T Consensus 9 D~~~dk~~~~~fl~e~~e~~~~~kY~~~L~eia~R----e~~ai~vdldDi~~~d~~~~l~~~i~~Na~ry~~lf~~~vd 84 (721)
T KOG0482|consen 9 DYAADKNKIKKFLDEFYEDNELGKYMNQLQEIANR----EQNAIEVDLDDIAEYDDATELVGAIESNARRYVELFSDAVD 84 (721)
T ss_pred hhhhhhHHHHHHHHhhhccCchhHHHHHHHHHhcc----cceeEEEehHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777776 56777776553 35689999999999983 7999999999999999999998
Q ss_pred HHHHHHhhhhh--hh-----------------hhhc---------ccceEEEEEeeCCCCCCCCCCCcccccccccCCCc
Q 006051 75 WAHKIVFDELK--SC-----------------EKRV---------EKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGV 126 (663)
Q Consensus 75 ~~~~~~~~~~~--~~-----------------~~~~---------~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igk 126 (663)
+.++....+.+ ++ +... ..+...+.+. |. ......++|++++.+||+
T Consensus 85 ellp~~~~~~~~~~d~lDv~~~qR~~~~~~~~p~~~~~~~~fP~~l~rryelyfk----~~-~~~kp~svR~vka~~iG~ 159 (721)
T KOG0482|consen 85 ELLPEPTGEIPYGDDVLDVYMEQRLMRNETRDPELEDKREQFPSELLRRYELYFK----PL-SNNKPYSVREVKADHIGS 159 (721)
T ss_pred HhcCCcccccccCccHHHHHHHHHHHhccccCccccchhhcCCHHHhhhheeeec----cc-ccCCccchhhhhhhhccc
Confidence 87653221111 00 0000 0011111111 10 011235789999999999
Q ss_pred EEEEeeEEEEecCceeEEEEEEEEecCCCCeeeecccccccccccCCCCCCCCCCCCCCCCc----eEEecCeeeEeeee
Q 006051 127 LLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGTN----FQFVENSIICHDYQ 202 (663)
Q Consensus 127 lv~i~G~V~r~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~~----f~~~~~~s~~~d~Q 202 (663)
||+|+|+|+|+|+|||.+..++|.|..||.++ ++.+. +..|.++..||+. .|..++ ..+..-.|+|+.||
T Consensus 160 LvtvrGIVTR~S~VKP~m~VatYtCd~CGaE~--yQeV~-s~~F~pl~~CpS~---eC~~n~~~G~L~lqtRgSKFikfQ 233 (721)
T KOG0482|consen 160 LVTVRGIVTRVSDVKPSMVVATYTCDQCGAET--YQEVN-SRTFTPLSECPSE---ECRTNKAGGRLYLQTRGSKFIKFQ 233 (721)
T ss_pred eEEEEEEEEeccccccceEEEEEecccccHhh--hcccc-CccccchhhCChH---HhhhcccCCeEEEEecccccchhh
Confidence 99999999999999999999999999999874 45443 4678888899974 454331 44444568999999
Q ss_pred EEEEeecccccCCCCcceEEEEEEecCcccceeeCCEEEEEEEEeeecCCCCcCccc--ccceEEEeeeeeeccccccCC
Q 006051 203 EIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVTGILTAKWSPDLKDVRC--DLDPVLIANHVRRTNELKSDI 280 (663)
Q Consensus 203 ~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~~pGd~V~v~GIl~~~~~~~~~~~~~--~~~~~~~a~~i~~~~~~~~~~ 280 (663)
++|+||..+++|.|.+|||++|.++++++.+|+|||.|.|+||+.+....+++..+. .-++|++|..|...|+...+.
T Consensus 234 e~kmQEls~qVPvG~IPRsltv~~~ge~tr~~~PGDvV~vsGiFLP~pytGfr~~~aGLladtYLeAh~v~~~nk~~~~~ 313 (721)
T KOG0482|consen 234 EVKMQELSDQVPVGHIPRSLTVHVYGEMTRKCQPGDVVVVSGIFLPIPYTGFRALKAGLLADTYLEAHRVVQINKKYDNI 313 (721)
T ss_pred hhhHHHHhccCCCCccCceeEEEEecccceecCCCCEEEEeeeecccchhhHHHHHhhhHHHHHHHHhhhhhhccccccc
Confidence 999999999999999999999999999999999999999999999866555444332 248899999888777766665
Q ss_pred CCCHHHHHHHHHHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchH
Q 006051 281 DIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGK 360 (663)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGK 360 (663)
+.+.+...+..++.. ..+ .|+.+++||+|+||||+++|+|+|+.|+||+.+...+|+++||++||||+|+||++|
T Consensus 314 ~~~~~~~~~~~~~~~---~~d--~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAK 388 (721)
T KOG0482|consen 314 EKTGELEPEELELIA---EGD--FYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAK 388 (721)
T ss_pred cccccccHHHHHHhh---ccc--HHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhH
Confidence 555544444433322 222 479999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC--chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhcee
Q 006051 361 SQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTI 438 (663)
Q Consensus 361 s~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i 438 (663)
|||++++.+++||++|++|.|+++.|||++..++. |+.+++.|++++||+|||||||||+|.+.++.++|++||||+|
T Consensus 389 SQLLkyi~rlapRgvYTTGrGSSGVGLTAAVmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTI 468 (721)
T KOG0482|consen 389 SQLLKYISRLAPRGVYTTGRGSSGVGLTAAVMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTI 468 (721)
T ss_pred HHHHHHHHhcCcccceecCCCCCccccchhhhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhh
Confidence 99999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred eeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCC
Q 006051 439 SVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEK 517 (663)
Q Consensus 439 ~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~ 517 (663)
+|+|+|+.+++|++|+|+||+||. |+|+|..+...|++||+||+||||+++.+.|.++.+.|..+++||...|.....+
T Consensus 469 SIaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp 548 (721)
T KOG0482|consen 469 SIAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQP 548 (721)
T ss_pred hhhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCC
Confidence 999999999999999999999997 9999999999999999999999999999999999999999999999998876554
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcc--cCCCccccHhHHHHHHHHHHHHHhccCCCc
Q 006051 518 DTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSA--TQNAARTTVRMLESLIRLAQAHARLMFRNE 595 (663)
Q Consensus 518 ~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~--~~~~~~~t~R~Le~lirla~a~A~l~~~~~ 595 (663)
. ....+++.+.+|.||++||+ ..|.++++..++|...|+.+|+.. .......|+|.|-+++|+|.|+|||++++.
T Consensus 549 ~--~~fepl~~~~mR~yI~~ak~-~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~ 625 (721)
T KOG0482|consen 549 P--LDFEPLDPNLMRRYISLAKR-KNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDS 625 (721)
T ss_pred C--ccCCCCCHHHHHHHHHHHhh-cCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccc
Confidence 3 45678999999999999985 599999999999999999999875 334567899999999999999999999999
Q ss_pred cChhhHHHHHHHHHhhhhh
Q 006051 596 VTRLDAITAILCIESSMTT 614 (663)
Q Consensus 596 V~~~Dv~~Ai~l~~~s~~~ 614 (663)
|.++||.+|++|++.|..+
T Consensus 626 V~~~DV~EALRLme~sK~s 644 (721)
T KOG0482|consen 626 VEEDDVNEALRLMEMSKDS 644 (721)
T ss_pred cchhhHHHHHHHHHhhhcc
Confidence 9999999999999998754
No 8
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=100.00 E-value=1.1e-100 Score=799.75 Aligned_cols=598 Identities=36% Similarity=0.556 Sum_probs=519.8
Q ss_pred HHHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhcccCHHHHHHHHhChHHHHHHHHHHHHHHHHH
Q 006051 8 AHLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKI 79 (663)
Q Consensus 8 ~~~~~f~~Fl~~~--------~~~~i~~~~~~~~~~~~~~l~Vd~~~L~~~dp~La~~l~~~P~~~l~~~~~a~~~~~~~ 79 (663)
+...+|+.||.+| |..-|+.+...+ .-++.|++.||..-.+.||..+-+.|.+++.+|++++.+++..
T Consensus 160 ~i~~~fk~fl~~y~d~~~~~~~~~ri~~~~~~n----~esl~v~y~dla~~~~~la~fl~~ap~e~l~I~dr~a~~~v~~ 235 (854)
T KOG0477|consen 160 EIARRFKNFLREYVDENGHNVYIERIRRMCEEN----RESLEVNYTDLAESEHVLAYFLPEAPEEMLEIFDRAALEVVLL 235 (854)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHhhc----hHHHHHHHHHHHHhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 4446699999998 444566665542 3479999999999999999999999999999999999887664
Q ss_pred HhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEeeEEEEecCceeEEEEEEEEecCCCCeee
Q 006051 80 VFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFP 159 (663)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C~~C~~~~~ 159 (663)
.+.. +......+|+|+. . +| ...++|.+|..|+|+||.+.|+|+|.|.|+|.+....|.|.+||..+
T Consensus 236 ~~p~-----yeri~~~ihvris--~----lP-~~~~lr~lRq~Hln~Lvr~~GvVtr~tgV~pql~~vky~C~KC~~vl- 302 (854)
T KOG0477|consen 236 HYPN-----YERIHNEIHVRIS--D----LP-VCESLRSLRQLHLNQLVRTSGVVTRRTGVFPQLSVVKYDCLKCGFVL- 302 (854)
T ss_pred hCCC-----hhhcccceeeeee--c----CC-ccccHHHHHHhccCceEEeeeEEEecceeehhhHHHhhhHHhhCCcc-
Confidence 4422 2345567899997 2 33 34578999999999999999999999999999999999999999553
Q ss_pred ecccccccccccCCCCCCCCCCCCCCCC-ceEEecCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcccceeeCC
Q 006051 160 VYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGD 238 (663)
Q Consensus 160 ~~~~~~~~~~~~~p~~Cp~~~~~~C~~~-~f~~~~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~~pGd 238 (663)
.+.+++.+....|..||+ |.++ +|.++.+.+.|.+||+|+|||.|..+|.|.+||+.+|+|..||||.|+|||
T Consensus 303 -gPF~qs~n~evkp~~C~~-----cqSkGpf~vn~e~TvyrnYQritiQEspg~v~~GrlPRsk~vILl~DLvD~~kpGd 376 (854)
T KOG0477|consen 303 -GPFVQSSNSEVKPGSCPE-----CQSKGPFEVNVEETVYRNYQRITIQESPGTVPAGRLPRSKEVILLADLVDSCKPGD 376 (854)
T ss_pred -CceeeccCceeCCCCCcc-----ccCCCCCccchhhhhhcccceeeeccCCCcCCCCccccchhheehhhhhhhcCCCc
Confidence 455566677788999996 4444 588888899999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEeeecCCCC--cCcccccceEEEeeeeeeccccccCCCCCHHHHHHHHHHHHhhcCCchhhHHHHhhcccccc
Q 006051 239 DVIVTGILTAKWSPDL--KDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQV 316 (663)
Q Consensus 239 ~V~v~GIl~~~~~~~~--~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~i 316 (663)
.|.|||||...|.... +++.+.|.++++||||.+.+......+++.++ ++.+|+..+..++ .++|++||||+|
T Consensus 377 EievTGIy~nn~d~sLN~kngFpvfatvi~ANhV~~k~~~~~~~~ltded---~k~i~~lskd~~i--~~rIiaSiaPsI 451 (854)
T KOG0477|consen 377 EIEVTGIYTNNFDGSLNTKNGFPVFATVIEANHVVKKDGKFDVDELTDED---FKEIWELSKDPPI--KERIIASIAPSI 451 (854)
T ss_pred ceEEeeeecccccccccccCCccccceeheehhhhhhccccchhHHhHHH---HHHHHHHhcCccH--HHHHHHhhCchh
Confidence 9999999999887554 66778899999999998755433334455554 5556655566665 467999999999
Q ss_pred CchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC-
Q 006051 317 FGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG- 395 (663)
Q Consensus 317 ~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~- 395 (663)
|||+.+|.|+.++|+||++++...|.++||++|+||+|+|||||||++|++++.++|+++++|.|++++|||+++.++.
T Consensus 452 yGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPv 531 (854)
T KOG0477|consen 452 YGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPV 531 (854)
T ss_pred hchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCcccc
Q 006051 396 -GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSV 473 (663)
Q Consensus 396 -~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~ 473 (663)
++|.+++|+|++||+|||+|||||+|+..++..+|++||||.|+|+|+|+++++.++|++|||+||. |+||+...+.+
T Consensus 532 trEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tFaq 611 (854)
T KOG0477|consen 532 TREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTFAQ 611 (854)
T ss_pred cceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccchhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999998 89999999999
Q ss_pred ccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCC-----C-----CCCCCCCCHHHHHHHHHHHHccCC
Q 006051 474 NTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKD-----T-----EPLTDIWPLAMLRRYIYFVKGYFK 543 (663)
Q Consensus 474 ~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~-----~-----~~~~~~~~~~~l~~~i~~~r~~~~ 543 (663)
|.++..|++||||+.+.+.|.-++..|+.+|+++...|....... . ...-.+++.+.|++||.|+|.++.
T Consensus 612 NV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~ 691 (854)
T KOG0477|consen 612 NVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVR 691 (854)
T ss_pred ccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999987765432111 0 011235899999999999999999
Q ss_pred CccCHHHHHHHHHHHHHHHhccc-CCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhhhhhhhhH
Q 006051 544 PILTKEAEKVISSYYQLQRRSAT-QNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVG 622 (663)
Q Consensus 544 p~ls~ea~~~l~~~y~~~r~~~~-~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~~~~~~ 622 (663)
|+|.+--.+.+...|..+|+..- .++.|+|+|.+|+++|+++|||||+||+.|+++|+..||+.+..|+.+ +...+++
T Consensus 692 PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldSfi~-aQk~Sv~ 770 (854)
T KOG0477|consen 692 PKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDSFIS-AQKFSVM 770 (854)
T ss_pred cccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHHHHH-HHHHHHH
Confidence 99999999999999999998643 456899999999999999999999999999999999999999999765 4566777
Q ss_pred hhhhhcCCCChh
Q 006051 623 NALHSNFTENPD 634 (663)
Q Consensus 623 ~~~~~~~~~~~~ 634 (663)
..++..|...+.
T Consensus 771 rslr~tF~~y~~ 782 (854)
T KOG0477|consen 771 RSLRKTFARYLS 782 (854)
T ss_pred HHHHHHHHHhcc
Confidence 888877765444
No 9
>smart00350 MCM minichromosome maintenance proteins.
Probab=100.00 E-value=3.3e-88 Score=748.58 Aligned_cols=488 Identities=37% Similarity=0.587 Sum_probs=432.8
Q ss_pred cccccccccCCCcEEEEeeEEEEecCceeEEEEEEEEecCCCCeeeecccccccccccCCCCCCCCCCCCCCCC-ceEEe
Q 006051 114 PSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFV 192 (663)
Q Consensus 114 ~~ir~l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~-~f~~~ 192 (663)
.++|+|++.++||||+|+|+|+|+|.|+|++++++|+|.+|++.+.+.. ..+.+..|..||+ ..|++. +|.++
T Consensus 3 ~~~r~l~s~~igklV~v~GiV~r~s~v~p~~~~~~f~C~~C~~~~~~~~---~~~~~~~p~~C~~---~~C~~~~~f~l~ 76 (509)
T smart00350 3 SSIRELRADHLGKLVRVSGIVTRTSGVRPKLKRASFTCEKCGATLGPEI---QSGRETEPTVCPP---RECQSPTPFSLN 76 (509)
T ss_pred CCcccCCHhHCCCEEEEEEEEEEccCceEEEEEEEEEecCCCCEEeEEe---cCCcccCCCcCCC---CcCCCCCceEec
Confidence 3579999999999999999999999999999999999999999876653 2457888999985 358876 49999
Q ss_pred cCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcccceeeCCEEEEEEEEeee-cCCCC--cCcccccceEEEeee
Q 006051 193 ENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVTGILTAK-WSPDL--KDVRCDLDPVLIANH 269 (663)
Q Consensus 193 ~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~~pGd~V~v~GIl~~~-~~~~~--~~~~~~~~~~~~a~~ 269 (663)
.+.|.|+|||+|+|||.|+++|.|++||+|+|+|++||||+|+|||+|.|+||++.+ |.... .+....+++++.|++
T Consensus 77 ~~~s~~~D~Q~I~iQE~~e~~p~G~~Prsi~v~l~~dLvd~~~PGD~V~i~Gi~~~~~~~~~~~~~~~~~~~~~~l~a~~ 156 (509)
T smart00350 77 HERSTFIDFQKIKLQESPEEVPAGQLPRSVDVILDGDLVDKAKPGDRVEVTGIYRNIPYGFKLNTVKGLPVFATYIEANH 156 (509)
T ss_pred cCCCeEEEEEEEEEEcCcccCCCCCCCcEEEEEEcccccCcccCCCEEEEEEEEEeeccccccccCCCcceeeEEEEEeE
Confidence 999999999999999999999999999999999999999999999999999999986 43222 222234789999999
Q ss_pred eeecccc--cc-----CCCCCHHHHHHHHHHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCC
Q 006051 270 VRRTNEL--KS-----DIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGT 342 (663)
Q Consensus 270 i~~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~ 342 (663)
|+..+.. .. ...+++++++.|+++++. + ..++.|++|++|.|+|++.+|+|++++|+||+.+...+|.
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~----~-~~~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~ 231 (509)
T smart00350 157 VRKLDYKRSFEDCSFSVQSLSDEEEEEIRKLSKD----P-DIYERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGM 231 (509)
T ss_pred EEEccccccccccccccccCCHHHHHHHHHHhcC----H-HHHHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCc
Confidence 9875432 11 135888988888887642 2 3578999999999999999999999999999999888999
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC--chhHhhhhhhhhccCCeeecccccc
Q 006051 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDS 420 (663)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~ 420 (663)
++|+++||||+|+||||||++||++++++++..++.+.+.+.+|++....++. |+|.+++|++++|++|+|||||+++
T Consensus 232 ~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A~~Gil~iDEi~~ 311 (509)
T smart00350 232 KIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREFTLEGGALVLADNGVCCIDEFDK 311 (509)
T ss_pred cccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceEEecCccEEecCCCEEEEechhh
Confidence 99999999999999999999999999999999999888778888888766663 7889999999999999999999999
Q ss_pred cChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhH
Q 006051 421 MREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEW 499 (663)
Q Consensus 421 l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~ 499 (663)
+++..|.+|+++||+|.+++.++|....+++++++|||+||. |+||+.+++..|+.++++++||||+++.+.|.++.+.
T Consensus 312 l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~ 391 (509)
T smart00350 312 MDDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEER 391 (509)
T ss_pred CCHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHH
Confidence 999999999999999999999999999999999999999997 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccC----CCccccHh
Q 006051 500 DAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQ----NAARTTVR 575 (663)
Q Consensus 500 d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~----~~~~~t~R 575 (663)
|..+++|+++.|..............|+.+.|++|+.|||+++.|.+|+++.++|.+||..+|..... ..+++|+|
T Consensus 392 d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R 471 (509)
T smart00350 392 DRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAREKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVR 471 (509)
T ss_pred HHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHH
Confidence 99999999987753221111223357999999999999998789999999999999999999986543 25789999
Q ss_pred HHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 576 MLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 576 ~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
+|++|+|+|+|+|+|++|+.|+++||.+|++|++.|+
T Consensus 472 ~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~~s~ 508 (509)
T smart00350 472 QLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLRESI 508 (509)
T ss_pred HHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999885
No 10
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=100.00 E-value=5e-65 Score=533.81 Aligned_cols=311 Identities=49% Similarity=0.789 Sum_probs=255.6
Q ss_pred hhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCc
Q 006051 303 KGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS 382 (663)
Q Consensus 303 ~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~ 382 (663)
..++.|++|+||+|+|++.+|+||+|+|+||+.+..++|.+.|+++||||+|+||||||+|++++++++|++++++|.++
T Consensus 13 ~~~~~l~~s~aP~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~~g~~~ 92 (331)
T PF00493_consen 13 NIFDRLANSIAPSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYTSGKGS 92 (331)
T ss_dssp THHHCCHHHCSSTTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEEECCGS
T ss_pred cHHHHHHHHhCCcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEECCCCc
Confidence 36789999999999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred ccCCceEEEeec--CchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeC
Q 006051 383 TSAGLTVTAVKD--GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN 460 (663)
Q Consensus 383 ~~~gl~~~~~~~--~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN 460 (663)
+.+|||++..++ .++|.+++|++++|++|||||||||+|+.+++..|+++||+|+++++++|+.++++++|+|+||+|
T Consensus 93 s~~gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~N 172 (331)
T PF00493_consen 93 SAAGLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAAN 172 (331)
T ss_dssp TCCCCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE-
T ss_pred ccCCccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHh
Confidence 999999998887 488999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCC---CCCCCCCCCCCHHHHHHHHH
Q 006051 461 PK-GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEE---KDTEPLTDIWPLAMLRRYIY 536 (663)
Q Consensus 461 ~~-g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~---~~~~~~~~~~~~~~l~~~i~ 536 (663)
|. |+||+.+...+|++++++|++|||++|.+.|.++++.|..+++|+++.|..... ...+.....|+.+.|++||.
T Consensus 173 P~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~yI~ 252 (331)
T PF00493_consen 173 PKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRKYIA 252 (331)
T ss_dssp -TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHHHHH
T ss_pred hhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHHHHH
Confidence 98 899999999999999999999999999999999999999999999999876531 11112235899999999999
Q ss_pred HHHccCCCccCHHHHHHHHHHHHHHHhccc--CCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhh
Q 006051 537 FVKGYFKPILTKEAEKVISSYYQLQRRSAT--QNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMT 613 (663)
Q Consensus 537 ~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~--~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~ 613 (663)
|||+++.|.+|++|.++|.+||+.+|+... ..+.++|+|+||+|||||+|||||++|++|+++||..|++|++.|+.
T Consensus 253 yar~~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~~Sl~ 331 (331)
T PF00493_consen 253 YARQNIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFEESLK 331 (331)
T ss_dssp HHHHHC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHHHHH-
T ss_pred HHHhhcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHHhhcC
Confidence 999889999999999999999999998762 45689999999999999999999999999999999999999999873
No 11
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.94 E-value=6.6e-27 Score=255.78 Aligned_cols=260 Identities=20% Similarity=0.258 Sum_probs=193.3
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc----eEEeCCCcccCCce--
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS----VITTGLGSTSAGLT-- 388 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~----~~~~~~~~~~~gl~-- 388 (663)
+|+|++.+++++.+++.+| .|++|+||||||||++++.++.+.+.. .+......+.+|..
T Consensus 193 dv~Gq~~~~~al~~aa~~g--------------~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 193 DIKGQQHAKRALEIAAAGG--------------HNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred HhcCcHHHHhhhhhhccCC--------------CEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 6799999999999999886 899999999999999999999876531 11111111111110
Q ss_pred -----------------EEEeecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCC
Q 006051 389 -----------------VTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLST 451 (663)
Q Consensus 389 -----------------~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~ 451 (663)
...+.+ |.+...+|.+.+|++|||||||++.+++..+..|+++||++.+++.+.|....+++
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~g-gg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa 337 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVG-GGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPA 337 (499)
T ss_pred ccccccCCccccccccchhhhhC-CccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccC
Confidence 001111 33557899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeCCC--CCCCCC---------CccccccCCChhhhhhhhhhhhhcCCCChh--------HHHHHHHHHhhhcC
Q 006051 452 RTIIFGATNPK--GHYDPN---------LSLSVNTTLSGPLLSRFDIVLVLLDTKNPE--------WDAVVSSHILAEGG 512 (663)
Q Consensus 452 ~~~iiaatN~~--g~~d~~---------~~~~~~~~l~~aLl~RFdli~~l~d~~~~~--------~d~~i~~~il~~~~ 512 (663)
++++|||+||+ |+|+.. ...++...++.||++|||+++.+.+....+ ....+.+++.....
T Consensus 338 ~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~s~~ir~rV~~Ar~ 417 (499)
T TIGR00368 338 RFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGESSAEVKQRVIKARE 417 (499)
T ss_pred CeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCCHHHHHHHHHHHHH
Confidence 99999999984 888541 123345689999999999999887654332 22334444432221
Q ss_pred CCCCCCCC----CCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHH
Q 006051 513 LSEEKDTE----PLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHA 588 (663)
Q Consensus 513 ~~~~~~~~----~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A 588 (663)
.+...... ..+..++...+++|+ .+++++.++|...|... ..|.|....++|+|+++|
T Consensus 418 ~q~~R~~~~~~~~~N~~l~~~~l~~~~---------~l~~~~~~~l~~a~~~~---------~lS~R~~~rilrvArTiA 479 (499)
T TIGR00368 418 IQNIRYEKFANINKNADLNSDEIEQFC---------KLSAIDANDLEGALNKL---------GLSSRATHRILKVARTIA 479 (499)
T ss_pred HHHHHhcCCCCCcccccCCHHHHHhhc---------CCCHHHHHHHHHHHHhc---------CCCchHHHHHHHHHHHHH
Confidence 11000000 124557788888764 46888999988887543 368999999999999999
Q ss_pred hccCCCccChhhHHHHHHH
Q 006051 589 RLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 589 ~l~~~~~V~~~Dv~~Ai~l 607 (663)
+|++++.|+.+|+.+|+.+
T Consensus 480 dL~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 480 DLKEEKNISREHLAEAIEY 498 (499)
T ss_pred hhcCCCCCCHHHHHHHHhc
Confidence 9999999999999999864
No 12
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1e-26 Score=242.94 Aligned_cols=262 Identities=23% Similarity=0.319 Sum_probs=191.1
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc---------eEEeCCC--
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS---------VITTGLG-- 381 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~---------~~~~~~~-- 381 (663)
+.+|.||+.+|+|+.++.+|| +|+|++||||||||++|+.+..++|.- .+.+-.+
T Consensus 178 ~~DV~GQ~~AKrAleiAAAGg--------------HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~ 243 (490)
T COG0606 178 FKDVKGQEQAKRALEIAAAGG--------------HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDL 243 (490)
T ss_pred hhhhcCcHHHHHHHHHHHhcC--------------CcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccc
Confidence 347899999999999999998 999999999999999999999877641 0000000
Q ss_pred -------------cccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceee
Q 006051 382 -------------STSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTT 448 (663)
Q Consensus 382 -------------~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~ 448 (663)
+.....+...+.++| ...++|.+.+|++||+|+||+-.......++|.+.||+|.+.|++++...+
T Consensus 244 ~~~~~~~~~rPFr~PHHsaS~~aLvGGG-~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ 322 (490)
T COG0606 244 HEGCPLKIHRPFRAPHHSASLAALVGGG-GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVT 322 (490)
T ss_pred cccCccceeCCccCCCccchHHHHhCCC-CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeE
Confidence 001111222233333 566899999999999999999999999999999999999999999999999
Q ss_pred cCCcEEEEEeeCCC--CCCCCC---------CccccccCCChhhhhhhhhhhhhcCCCChhH---------HHHHHHHHh
Q 006051 449 LSTRTIIFGATNPK--GHYDPN---------LSLSVNTTLSGPLLSRFDIVLVLLDTKNPEW---------DAVVSSHIL 508 (663)
Q Consensus 449 ~~~~~~iiaatN~~--g~~d~~---------~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~---------d~~i~~~il 508 (663)
++++|.+++|+||+ |.+... ....+..+++.+|++|+|+.+.+...+..+. ...+...+.
T Consensus 323 ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~ess~~v~~rVa 402 (490)
T COG0606 323 YPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGESSAGVRERVA 402 (490)
T ss_pred EeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCCCcHHHHHHHH
Confidence 99999999999996 655322 2233556899999999999998766541111 222333332
Q ss_pred hhcCCCCCCCCCC-CCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHH
Q 006051 509 AEGGLSEEKDTEP-LTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAH 587 (663)
Q Consensus 509 ~~~~~~~~~~~~~-~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~ 587 (663)
..+..+....... .+..++.+.|++|+ .++.++.+++...... ..++.|....++|+|+++
T Consensus 403 ~AR~~Q~~R~~~~~~Na~l~~~~l~k~~---------~L~~~~~~~L~~al~~---------~~lS~R~~~rILKvarTi 464 (490)
T COG0606 403 KAREAQIARAGRIGINAELSEEALRKFC---------ALQREDADLLKAALER---------LGLSARAYHRILKVARTI 464 (490)
T ss_pred HHHHHHHHHhhccCcchhcCHHHHHHhc---------ccCHhHHHHHHHHHHh---------cchhHHHHHHHHHHHhhh
Confidence 2221110000000 24456677777754 4566777777764332 346789999999999999
Q ss_pred HhccCCCccChhhHHHHHHH
Q 006051 588 ARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 588 A~l~~~~~V~~~Dv~~Ai~l 607 (663)
|+|...+.|...|+.+|+..
T Consensus 465 ADL~g~~~i~~~hl~eAi~y 484 (490)
T COG0606 465 ADLEGSEQIERSHLAEAISY 484 (490)
T ss_pred hcccCcchhhHHHHHHHHhh
Confidence 99999999999999999975
No 13
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.93 E-value=4e-26 Score=248.12 Aligned_cols=260 Identities=24% Similarity=0.344 Sum_probs=188.4
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc----eEEe-------CCCcc
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS----VITT-------GLGST 383 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~----~~~~-------~~~~~ 383 (663)
.++|+..+|+++.+++.+| .|++|+||||+|||++++.++.+.+.. .+.. |....
T Consensus 192 ~v~Gq~~~~~al~laa~~G--------------~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~ 257 (506)
T PRK09862 192 DVIGQEQGKRGLEITAAGG--------------HNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESV 257 (506)
T ss_pred EEECcHHHHhhhheeccCC--------------cEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccc
Confidence 5789999999999888876 899999999999999999999876632 1111 11000
Q ss_pred cCCc------------eEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCC
Q 006051 384 SAGL------------TVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLST 451 (663)
Q Consensus 384 ~~gl------------~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~ 451 (663)
..++ +...+.+ |.+...+|.+.+|++|++|+||++.+++..+..|+++||+|.+++.+.|....+++
T Consensus 258 ~~~~~~rPfr~ph~~~s~~~l~G-Gg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~~pa 336 (506)
T PRK09862 258 QKQWRQRPFRSPHHSASLTAMVG-GGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKITYPA 336 (506)
T ss_pred cCCcCCCCccCCCccchHHHHhC-CCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCcceeccC
Confidence 0111 1111222 44567899999999999999999999999999999999999999999999999999
Q ss_pred cEEEEEeeCCC--CCCCCC-------CccccccCCChhhhhhhhhhhhhcCCCCh---------hHHHHHHHHHhhhcCC
Q 006051 452 RTIIFGATNPK--GHYDPN-------LSLSVNTTLSGPLLSRFDIVLVLLDTKNP---------EWDAVVSSHILAEGGL 513 (663)
Q Consensus 452 ~~~iiaatN~~--g~~d~~-------~~~~~~~~l~~aLl~RFdli~~l~d~~~~---------~~d~~i~~~il~~~~~ 513 (663)
++.+|||+||+ |.|+.. ...++...++.++++|||+.+.+...+.. +....+.+.+......
T Consensus 337 ~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~~i~~rV~~ar~~ 416 (506)
T PRK09862 337 RFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSATVKQRVMAARER 416 (506)
T ss_pred CEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChHHHHHHHhhHHHH
Confidence 99999999995 677432 12234467999999999999988655321 1111222222211110
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCC
Q 006051 514 SEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFR 593 (663)
Q Consensus 514 ~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~ 593 (663)
.... ....+..++...+++|+ .+++++.+.+..++... ..|.|....++|+|+++|+|+++
T Consensus 417 q~~r-~~~~n~~l~~~~l~~~~---------~l~~~~~~~l~~~~~~~---------~lS~Ra~~rlLrvARTiADL~g~ 477 (506)
T PRK09862 417 QFKR-QNKLNAWLDSPEIRQFC---------KLESEDARWLEETLIHL---------GLSIRAWQRLLKVARTIADIDQS 477 (506)
T ss_pred HHHH-HHHHhcccCHHHHHHHh---------CCCHHHHHHHHHHHHHc---------CCCHHHHHHHHHHHHHHHHHcCC
Confidence 0000 00112334556666654 36788888888876543 36799999999999999999999
Q ss_pred CccChhhHHHHHHHH
Q 006051 594 NEVTRLDAITAILCI 608 (663)
Q Consensus 594 ~~V~~~Dv~~Ai~l~ 608 (663)
+.|+.+|+.+|+.+-
T Consensus 478 ~~V~~~hv~eAl~yR 492 (506)
T PRK09862 478 DIITRQHLQEAVSYR 492 (506)
T ss_pred CCCCHHHHHHHHHhh
Confidence 999999999999874
No 14
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.93 E-value=7.4e-25 Score=248.88 Aligned_cols=261 Identities=23% Similarity=0.255 Sum_probs=198.9
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC--------------------
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN-------------------- 372 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~-------------------- 372 (663)
+..|+||+.+|++++++++.+ ...+|||.|+||||||++||++++++|
T Consensus 3 f~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~ 70 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEW 70 (633)
T ss_pred cchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCcccc
Confidence 357999999999999999874 114699999999999999999999985
Q ss_pred ---------------CceEEeCCCcccCCceEEE----eecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHH
Q 006051 373 ---------------RSVITTGLGSTSAGLTVTA----VKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAM 433 (663)
Q Consensus 373 ---------------~~~~~~~~~~~~~gl~~~~----~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~m 433 (663)
.+++....+.+...+.... ....|.+...+|.+..|++||+||||++++++..++.|+++|
T Consensus 71 ~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~l 150 (633)
T TIGR02442 71 CEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAA 150 (633)
T ss_pred ChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHH
Confidence 2333333333322222211 011245667799999999999999999999999999999999
Q ss_pred HhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCC
Q 006051 434 EQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGL 513 (663)
Q Consensus 434 e~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~ 513 (663)
++|.+.+.+.|....+++++.+|||+||.. ..++++|++||++.+.+.+..+.+.+..+..+.+.....
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~e-----------g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~ 219 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEE-----------GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDAD 219 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCC-----------CCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccC
Confidence 999999999999999999999999999851 146779999999999887766655555555554432211
Q ss_pred CCCCCCCCCCCCCC--HHHHHHHHHHHHccCC-CccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhc
Q 006051 514 SEEKDTEPLTDIWP--LAMLRRYIYFVKGYFK-PILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARL 590 (663)
Q Consensus 514 ~~~~~~~~~~~~~~--~~~l~~~i~~~r~~~~-p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l 590 (663)
. ......|. ...+.+.+..++.... ..+++++.++|..++...+.. +.|....++|+|+|+|.|
T Consensus 220 ~-----~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~--------s~Ra~i~~~r~Ara~AaL 286 (633)
T TIGR02442 220 P-----EAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVD--------GHRADIVMARAARALAAL 286 (633)
T ss_pred c-----HHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCC--------CccHHHHHHHHHHHHHHH
Confidence 0 00011122 2467788888875533 358999999999998776432 489999999999999999
Q ss_pred cCCCccChhhHHHHHHHHH
Q 006051 591 MFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 591 ~~~~~V~~~Dv~~Ai~l~~ 609 (663)
++++.|+.+|+.+|+.++-
T Consensus 287 ~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 287 DGRRRVTAEDVREAAELVL 305 (633)
T ss_pred cCCCcCCHHHHHHHHHHHh
Confidence 9999999999999998864
No 15
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.92 E-value=2.1e-24 Score=224.48 Aligned_cols=261 Identities=21% Similarity=0.193 Sum_probs=185.9
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCC--------Cc---
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL--------GS--- 382 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~--------~~--- 382 (663)
..|.|++.+|++++++++.. +..|+||.|+||||||+++|++++++|.--...++ +.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~ 75 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW 75 (334)
T ss_pred HHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccc
Confidence 47899999999999887521 01689999999999999999999998641111110 00
Q ss_pred -----------------ccCCceEEEeec---------CchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhc
Q 006051 383 -----------------TSAGLTVTAVKD---------GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQ 436 (663)
Q Consensus 383 -----------------~~~gl~~~~~~~---------~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~ 436 (663)
...+.+...+.+ .|++..++|.+..|++|++|+||++.++++.++.|+++|+++
T Consensus 76 ~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~ 155 (334)
T PRK13407 76 AHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSG 155 (334)
T ss_pred ccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcC
Confidence 001111111222 266778899999999999999999999999999999999999
Q ss_pred eeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCC
Q 006051 437 TISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEE 516 (663)
Q Consensus 437 ~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~ 516 (663)
.+++.+.|....+++++.++|++||.. ..++++|++||.+.+.+..+.+.+....+.............
T Consensus 156 ~v~v~r~G~~~~~p~rfiviAt~NP~e-----------~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~ 224 (334)
T PRK13407 156 ENVVEREGLSIRHPARFVLVGSGNPEE-----------GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDA 224 (334)
T ss_pred CeEEEECCeEEecCCCEEEEecCCccc-----------CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchh
Confidence 999999999999999999999999951 147789999999999886665534333332221111000000
Q ss_pred -CCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCc
Q 006051 517 -KDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNE 595 (663)
Q Consensus 517 -~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~ 595 (663)
...-........+.+...-..++ ...++++..+++.+.....|.. ++|.-..+++.|+++|-+++|+.
T Consensus 225 ~~~~~~~~~~~~~~~i~~a~~~~~---~V~v~~~~~~yi~~l~~~~~~~--------s~Ra~i~l~~aA~a~A~l~Gr~~ 293 (334)
T PRK13407 225 FMAKWGAEDMQLRGRILGARARLP---QLKTPNTVLHDCAALCIALGSD--------GLRGELTLLRAARALAAFEGAEA 293 (334)
T ss_pred hhccccccccCCHHHHHHHHHhcC---CcccCHHHHHHHHHHHHHHCCC--------CchHHHHHHHHHHHHHHHcCCCe
Confidence 00000012344455555543333 3458899999999988777652 47888889999999999999999
Q ss_pred cChhhHHHHHHHH
Q 006051 596 VTRLDAITAILCI 608 (663)
Q Consensus 596 V~~~Dv~~Ai~l~ 608 (663)
|+.+|+..+..++
T Consensus 294 V~~~Di~~~~~~v 306 (334)
T PRK13407 294 VGRSHLRSVATMA 306 (334)
T ss_pred eCHHHHHHHHHHh
Confidence 9999998877554
No 16
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.92 E-value=3.4e-25 Score=211.59 Aligned_cols=165 Identities=28% Similarity=0.448 Sum_probs=99.6
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEe----CCCcccCC---
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT----GLGSTSAG--- 386 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~----~~~~~~~g--- 386 (663)
.+|.||+.+|+|++++.+|+ .|+||+||||||||++|+.+..++|.--... ....+.+|
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~--------------h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~ 68 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG--------------HHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGP 68 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC----------------EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S-
T ss_pred hhhcCcHHHHHHHHHHHcCC--------------CCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCC
Confidence 58999999999999999997 8999999999999999999999887522111 11111111
Q ss_pred ---c-------------eEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecC
Q 006051 387 ---L-------------TVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLS 450 (663)
Q Consensus 387 ---l-------------~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~ 450 (663)
+ +...+.+ |.....+|.+.+|++||+|+||+..+++...++|++.||+|.+++.++|...++|
T Consensus 69 ~~~~~~~~Pfr~phhs~s~~~liG-gg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~P 147 (206)
T PF01078_consen 69 DEGLIRQRPFRAPHHSASEAALIG-GGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYP 147 (206)
T ss_dssp --EEEE---EEEE-TT--HHHHHE-EGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB
T ss_pred CCceecCCCcccCCCCcCHHHHhC-CCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEe
Confidence 0 1111112 3346789999999999999999999999999999999999999999999999999
Q ss_pred CcEEEEEeeCCC--CCCC-CC--------CccccccCCChhhhhhhhhhhhhcC
Q 006051 451 TRTIIFGATNPK--GHYD-PN--------LSLSVNTTLSGPLLSRFDIVLVLLD 493 (663)
Q Consensus 451 ~~~~iiaatN~~--g~~d-~~--------~~~~~~~~l~~aLl~RFdli~~l~d 493 (663)
+++.+|||+||+ |.|. +. ...++..+++.||++|||+.+.+..
T Consensus 148 a~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~ 201 (206)
T PF01078_consen 148 ARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPR 201 (206)
T ss_dssp --EEEEEEE-S-------------------------------------------
T ss_pred cccEEEEEeccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999996 7653 22 3345667899999999999998744
No 17
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.92 E-value=3.6e-24 Score=222.90 Aligned_cols=260 Identities=22% Similarity=0.221 Sum_probs=188.2
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCC-------------
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL------------- 380 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~------------- 380 (663)
..|.||+.+|+|++++++.. +-.++||.|++|||||+++|.++++++..-...+.
T Consensus 17 ~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMS 84 (350)
T ss_pred HHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhc
Confidence 47899999999999999874 11469999999999999999999887641110000
Q ss_pred --------C--------------cccCCceEEEeec---------CchhHhhhhhhhhccCCeeecccccccChhhHHhH
Q 006051 381 --------G--------------STSAGLTVTAVKD---------GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATI 429 (663)
Q Consensus 381 --------~--------------~~~~gl~~~~~~~---------~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L 429 (663)
+ ....|.+...+.+ +|.+.+++|.+..|++|++|+||++.+++..|..|
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~L 164 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDIL 164 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHH
Confidence 0 0001112111111 24556679999999999999999999999999999
Q ss_pred HHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhh
Q 006051 430 HEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILA 509 (663)
Q Consensus 430 ~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~ 509 (663)
+++|++|.+++.+.|....+++++.++++.||.. ..++++|++||.+.+.+..+.+.+.+..+.++...
T Consensus 165 Leam~e~~~~ier~G~s~~~p~rfiviaT~np~e-----------g~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 165 LDSAASGWNTVEREGISIRHPARFVLVGSGNPEE-----------GELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred HHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc-----------CCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhc
Confidence 9999999999999999999999999999999961 14777999999999999776655555544433221
Q ss_pred hcCCCCC--CCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHH
Q 006051 510 EGGLSEE--KDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAH 587 (663)
Q Consensus 510 ~~~~~~~--~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~ 587 (663)
....... .... .......+.+...-..++ ...++++..++|.+.....|.. ++|....++|.|+|+
T Consensus 234 ~~~~~~~~~~~~~-~~~~~~~~~I~~ar~~~~---~V~v~~~~~~yi~~l~~~~~~~--------s~Ra~i~l~raArA~ 301 (350)
T CHL00081 234 FDKNPQEFREKYE-ESQEELRSKIVAAQNLLP---KVEIDYDLRVKISQICSELDVD--------GLRGDIVTNRAAKAL 301 (350)
T ss_pred cccChhhhhhhhc-cccccCHHHHHHHHHhcC---CCccCHHHHHHHHHHHHHHCCC--------CChHHHHHHHHHHHH
Confidence 1100000 0000 011223444444433332 3458999999999998877652 589999999999999
Q ss_pred HhccCCCccChhhHHHHHHHH
Q 006051 588 ARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 588 A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
|.|++|+.|+++|+..|..++
T Consensus 302 Aal~GR~~V~pdDv~~~a~~v 322 (350)
T CHL00081 302 AAFEGRTEVTPKDIFKVITLC 322 (350)
T ss_pred HHHcCCCCCCHHHHHHHHHHH
Confidence 999999999999999998775
No 18
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.92 E-value=6e-24 Score=238.63 Aligned_cols=252 Identities=19% Similarity=0.188 Sum_probs=198.9
Q ss_pred hHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc--eEEeCCCcccCCceEEE----ee
Q 006051 320 FTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGLGSTSAGLTVTA----VK 393 (663)
Q Consensus 320 ~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~--~~~~~~~~~~~gl~~~~----~~ 393 (663)
+.+|+|++|..+.+. --||||.|+||||||++++++++++++. +.....+.+...+.... ..
T Consensus 1 ~~~~~Al~l~av~p~------------~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~ 68 (589)
T TIGR02031 1 ERAKLALTLLAVDPS------------LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESL 68 (589)
T ss_pred ChHHHHHHHhccCCC------------cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhh
Confidence 468999999998751 2589999999999999999999998864 66555444444333321 11
Q ss_pred cCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCcccc
Q 006051 394 DGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSV 473 (663)
Q Consensus 394 ~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~ 473 (663)
..|.+..++|.+..|++|++||||++.+++..++.|+++|++|.+++.+.|....+++++.+|||+||.. .
T Consensus 69 ~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e---------~ 139 (589)
T TIGR02031 69 AGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAE---------G 139 (589)
T ss_pred hcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcc---------c
Confidence 2366778899999999999999999999999999999999999999999999999999999999999962 1
Q ss_pred ccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCC-ccCHHHHH
Q 006051 474 NTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKP-ILTKEAEK 552 (663)
Q Consensus 474 ~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p-~ls~ea~~ 552 (663)
...++++|++||++.+.+.+.++.+.+..+.++.+..... ........+++.+..++..+.. .+++++.+
T Consensus 140 ~g~L~~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~---------~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~ 210 (589)
T TIGR02031 140 GGGLPDHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVF---------RMNDELELLRGQIEAARELLPQVTISAEQVK 210 (589)
T ss_pred cCCCCHHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhh---------hcchhhHHHHHHHHHHHHhcCCccCCHHHHH
Confidence 1368889999999999887777766555555554422110 0112456788888888865443 48899999
Q ss_pred HHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHH
Q 006051 553 VISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 553 ~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~ 609 (663)
.|..++..++. .+.|....++|.|+|+|.|++|+.|+++|+..|+.++-
T Consensus 211 ~l~~~~~~~gv--------~s~Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lvl 259 (589)
T TIGR02031 211 ELVLTAASLGI--------SGHRADLFAVRAAKAHAALHGRTEVTEEDLKLAVELVL 259 (589)
T ss_pred HHHHHHHHcCC--------CCccHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Confidence 99988865443 14899999999999999999999999999999999874
No 19
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.92 E-value=6.1e-24 Score=221.58 Aligned_cols=259 Identities=21% Similarity=0.234 Sum_probs=187.1
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEe---------------
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--------------- 378 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~--------------- 378 (663)
..|.||+.+|+|++++++.+ +.-|+||.|+||+|||+++|+++.+.+..-...
T Consensus 4 ~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMC 71 (337)
T ss_pred cccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccC
Confidence 47899999999999999873 115799999999999999999998875311000
Q ss_pred -------------------------CCCcccCCceEEEe----ecCchhHhhhhhhhhccCCeeecccccccChhhHHhH
Q 006051 379 -------------------------GLGSTSAGLTVTAV----KDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATI 429 (663)
Q Consensus 379 -------------------------~~~~~~~gl~~~~~----~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L 429 (663)
-.+.+...++.... -..|++.+++|.+..|++|++||||++.+++..|..|
T Consensus 72 ~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~L 151 (337)
T TIGR02030 72 EEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVL 151 (337)
T ss_pred hHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHH
Confidence 00111112222211 1136777889999999999999999999999999999
Q ss_pred HHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhh
Q 006051 430 HEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILA 509 (663)
Q Consensus 430 ~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~ 509 (663)
+++|++|.+++.+.|....+++++.+++++||.. ..++++|++||.+.+.+..+.+.+.+..+.+....
T Consensus 152 l~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e-----------g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~ 220 (337)
T TIGR02030 152 LDVAASGWNVVEREGISIRHPARFVLVGSGNPEE-----------GELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTE 220 (337)
T ss_pred HHHHHhCCeEEEECCEEEEcCCCEEEEecccccc-----------CCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhh
Confidence 9999999888899999989999999999999861 24778999999999988766553333333222111
Q ss_pred hcCCCCCCCCCCCCCCC--CHHHHHHHHHHHHccCC-CccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHH
Q 006051 510 EGGLSEEKDTEPLTDIW--PLAMLRRYIYFVKGYFK-PILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQA 586 (663)
Q Consensus 510 ~~~~~~~~~~~~~~~~~--~~~~l~~~i~~~r~~~~-p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a 586 (663)
.... . ......+ ....+.+-|..+++.+. ..+++++.+++.+.....|.. ++|....++|.|+|
T Consensus 221 ~~~~---~--~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~--------s~Ra~i~l~raArA 287 (337)
T TIGR02030 221 YDAD---P--HAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVD--------GLRGELTLNRAAKA 287 (337)
T ss_pred cccC---c--hhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCC--------CCcHHHHHHHHHHH
Confidence 1000 0 0000001 11234455555554433 348899999999988776632 57999999999999
Q ss_pred HHhccCCCccChhhHHHHHHHH
Q 006051 587 HARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 587 ~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
+|.+++|+.|+++|+..|+.++
T Consensus 288 ~Aal~GR~~V~~dDv~~~a~~v 309 (337)
T TIGR02030 288 LAAFEGRTEVTVDDIRRVAVLA 309 (337)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999998876
No 20
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.86 E-value=5e-21 Score=197.98 Aligned_cols=252 Identities=24% Similarity=0.265 Sum_probs=185.6
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCC-----------
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL----------- 380 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~----------- 380 (663)
.+..+.|++.+|+|+++..+.. .-.++|+.|+.|||||+++|+++.++|.-....|+
T Consensus 15 pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred chhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhh
Confidence 3557899999999999986553 11469999999999999999999998764433333
Q ss_pred -----------------------------CcccCCceEE----EeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 381 -----------------------------GSTSAGLTVT----AVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 381 -----------------------------~~~~~gl~~~----~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
+++..-+..+ .....|...+++|.|..|++||+++||++.++...++
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd 162 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVD 162 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHH
Confidence 1111111111 0011256678899999999999999999999999999
Q ss_pred hHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHH
Q 006051 428 TIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSH 506 (663)
Q Consensus 428 ~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~ 506 (663)
.|+.+++.|...+.+.|+..++|+++.+|||+||. | .|.++|++||.+.+.+..+.+.+....+..+
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeG------------eLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r 230 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEG------------ELRPQLLDRFGLEVDTHYPLDLEERVEIIRR 230 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCccEEEEeecCcccc------------ccchhhHhhhcceeeccCCCCHHHHHHHHHH
Confidence 99999999988889999999999999999999997 5 4566999999999998777776666555444
Q ss_pred HhhhcCCCCCCCCCCCCCCCCHH----------HHHHHHHHHHccCC-CccCHHHHHHHHHHHHHHHhcccCCCccccHh
Q 006051 507 ILAEGGLSEEKDTEPLTDIWPLA----------MLRRYIYFVKGYFK-PILTKEAEKVISSYYQLQRRSATQNAARTTVR 575 (663)
Q Consensus 507 il~~~~~~~~~~~~~~~~~~~~~----------~l~~~i~~~r~~~~-p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R 575 (663)
-+... ..|.. .|+.-+.-+++.+. ..+++++...+.......--. ..|
T Consensus 231 ~~~f~-------------~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~--------g~r 289 (423)
T COG1239 231 RLAFE-------------AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVD--------GHR 289 (423)
T ss_pred HHHhh-------------cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccC--------CCc
Confidence 43321 12333 34433333443222 236666666666654332211 266
Q ss_pred HHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 576 MLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 576 ~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
.-..+.|.++|+|.+.++.+|+.+|+.+|..+.
T Consensus 290 adi~~~r~a~a~aa~~Gr~~v~~~Di~~a~~l~ 322 (423)
T COG1239 290 ADIVVVRAAKALAALRGRTEVEEEDIREAAELA 322 (423)
T ss_pred hhhHHHHHHHHHHHhcCceeeehhhHHHHHhhh
Confidence 777889999999999999999999999999886
No 21
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.86 E-value=2.6e-20 Score=198.88 Aligned_cols=271 Identities=18% Similarity=0.145 Sum_probs=186.1
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc--eEEeCC-Cc
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGL-GS 382 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~--~~~~~~-~~ 382 (663)
..+.+.+...|+|++.+.+.++.++..| .||||.||||||||++|+++++.+.+. +..... .+
T Consensus 12 ~~l~~~l~~~i~gre~vI~lll~aalag--------------~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~ft 77 (498)
T PRK13531 12 SRLSSALEKGLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFS 77 (498)
T ss_pred HHHHHHHhhhccCcHHHHHHHHHHHccC--------------CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeec
Confidence 4577788889999999888888888776 799999999999999999999987642 221111 11
Q ss_pred ccCCceEE----EeecCchhH-hhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEE
Q 006051 383 TSAGLTVT----AVKDGGEWM-LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (663)
Q Consensus 383 ~~~gl~~~----~~~~~~~~~-~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iia 457 (663)
+...++.. ..++.|.+. ...|.+..++ ++|+|||+++++..+++|+++|+++.+++ +|....++.++.++|
T Consensus 78 tp~DLfG~l~i~~~~~~g~f~r~~~G~L~~A~--lLfLDEI~rasp~~QsaLLeam~Er~~t~--g~~~~~lp~rfiv~A 153 (498)
T PRK13531 78 TPEEVFGPLSIQALKDEGRYQRLTSGYLPEAE--IVFLDEIWKAGPAILNTLLTAINERRFRN--GAHEEKIPMRLLVTA 153 (498)
T ss_pred CcHHhcCcHHHhhhhhcCchhhhcCCcccccc--EEeecccccCCHHHHHHHHHHHHhCeEec--CCeEEeCCCcEEEEE
Confidence 22222221 111123332 4456665555 99999999999999999999999999865 677778888866665
Q ss_pred eeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHH
Q 006051 458 ATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEW-DAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIY 536 (663)
Q Consensus 458 atN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~-d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 536 (663)
+ |+-.. .....+++++||-+.+.+..+.+.+. ...+.. ....... .......++.+++.....
T Consensus 154 T-N~LPE---------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~-----~~~~~~~-~~~~~~vis~eel~~lq~ 217 (498)
T PRK13531 154 S-NELPE---------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS-----QQDENDN-PVPASLQITDEEYQQWQK 217 (498)
T ss_pred C-CCCcc---------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHc-----ccccccC-CCcccCCCCHHHHHHHHH
Confidence 5 86310 11334589999966666744443332 333322 1110011 111245688888888877
Q ss_pred HHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhh
Q 006051 537 FVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTS 615 (663)
Q Consensus 537 ~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~ 615 (663)
.++ ...++++..++|.+.....|... +...+|+|....++++++|+|-+++|+.|+++|+..|...+-..+.+.
T Consensus 218 ~v~---~V~v~d~v~eyI~~L~~~lr~~r--~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ll~~vL~HRl~~~ 291 (498)
T PRK13531 218 EIG---KITLPDHVFELIFQLRQQLDALP--NAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLILLKDCLWHDAQSL 291 (498)
T ss_pred Hhc---ceeCCHHHHHHHHHHHHHHhcCC--CCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHHHhHHHhccCHHHH
Confidence 775 34678888888888776666432 123489999999999999999999999999999996666555444443
No 22
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=1e-21 Score=208.18 Aligned_cols=230 Identities=21% Similarity=0.255 Sum_probs=171.7
Q ss_pred ccccccCchh-HHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCC
Q 006051 311 GICPQVFGLF-TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAG 386 (663)
Q Consensus 311 si~p~i~G~~-~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~g 386 (663)
.=+++|.|.. .+..++.++--. -+.+.+||+.|++||||..+|+++|+.++| +|+..++++....
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~-----------A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~ 310 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRI-----------AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPET 310 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhh-----------cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHH
Confidence 3467788866 444444444332 134589999999999999999999999886 7888888776655
Q ss_pred ceEEEeecC--chhH-----hhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEee
Q 006051 387 LTVTAVKDG--GEWM-----LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (663)
Q Consensus 387 l~~~~~~~~--~~~~-----~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat 459 (663)
|..+.+++. |.++ .++|.+.+|+||.+|+|||+.|+...|..|+++++++.+ .+-|.....+.+++|||||
T Consensus 311 LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei--~rvG~t~~~~vDVRIIAAT 388 (560)
T COG3829 311 LLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEI--ERVGGTKPIPVDVRIIAAT 388 (560)
T ss_pred HHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceE--EecCCCCceeeEEEEEecc
Confidence 554444432 2221 268999999999999999999999999999999999987 7788888999999999999
Q ss_pred CCC-------CCCCCCCcccccc-CC-ChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHH
Q 006051 460 NPK-------GHYDPNLSLSVNT-TL-SGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAM 530 (663)
Q Consensus 460 N~~-------g~~d~~~~~~~~~-~l-~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~ 530 (663)
|.. |+|..+.+|+.|. .+ -|||+.|-+.|..+ +.+++..+..
T Consensus 389 N~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L------------~~~Fl~k~s~----------------- 439 (560)
T COG3829 389 NRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLL------------AEYFLDKFSR----------------- 439 (560)
T ss_pred CcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHH------------HHHHHHHHHH-----------------
Confidence 983 8999999999984 22 37888898877755 4455443221
Q ss_pred HHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHH
Q 006051 531 LRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAI 602 (663)
Q Consensus 531 l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~ 602 (663)
.|- ...+.++++|.+.|.+| .||+|+|+|+++|.-+-- -+.-...|+..|.-
T Consensus 440 -----~~~--~~v~~ls~~a~~~L~~y-----------~WPGNVRELeNviER~v~--~~~~~~~I~~~~lp 491 (560)
T COG3829 440 -----RYG--RNVKGLSPDALALLLRY-----------DWPGNVRELENVIERAVN--LVESDGLIDADDLP 491 (560)
T ss_pred -----HcC--CCcccCCHHHHHHHHhC-----------CCCchHHHHHHHHHHHHh--ccCCcceeehhhcc
Confidence 111 12456999999999999 899999999999986543 22223345555544
No 23
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=99.84 E-value=2.8e-20 Score=206.87 Aligned_cols=237 Identities=16% Similarity=0.092 Sum_probs=182.7
Q ss_pred hhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC--ceEEeCCCcccCCceEEE----e
Q 006051 319 LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLGSTSAGLTVTA----V 392 (663)
Q Consensus 319 ~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~--~~~~~~~~~~~~gl~~~~----~ 392 (663)
++.+|.|++|..+.+.. --.||+.|++|||||++++.++.++|. ++.....+.+...+.... .
T Consensus 8 ~~~~~~Al~l~av~p~~-----------~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~ 76 (584)
T PRK13406 8 WADAALAAALLAVDPAG-----------LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAAT 76 (584)
T ss_pred HHHHHHHHHHhCcCccc-----------cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhH
Confidence 78999999998876411 135999999999999999999999886 777766666665544332 1
Q ss_pred ecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccc
Q 006051 393 KDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLS 472 (663)
Q Consensus 393 ~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~ 472 (663)
-..|....++|.+.+|++||+|+||++.+++..++.|+++|++|.++|.++|...++|++|.+||+.|+. .
T Consensus 77 l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~-~-------- 147 (584)
T PRK13406 77 LRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGA-E-------- 147 (584)
T ss_pred hhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCCh-h--------
Confidence 1124555789999999999999999999999999999999999999999999999999999999986653 1
Q ss_pred cccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHH
Q 006051 473 VNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEK 552 (663)
Q Consensus 473 ~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~ 552 (663)
+...++++|++||++.+.+......+... ...+.+.+...-... -...++++..+
T Consensus 148 ~~~~L~~~lLDRf~l~v~v~~~~~~~~~~----------------------~~~~~~~I~~AR~rl---~~v~v~~~~l~ 202 (584)
T PRK13406 148 EDERAPAALADRLAFHLDLDGLALRDARE----------------------IPIDADDIAAARARL---PAVGPPPEAIA 202 (584)
T ss_pred cccCCCHHhHhheEEEEEcCCCChHHhcc----------------------cCCCHHHHHHHHHHH---ccCCCCHHHHH
Confidence 12479999999999999986655433210 112233333332221 13457888777
Q ss_pred HHHHHHHHHHhcccCCCccc-cHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHH
Q 006051 553 VISSYYQLQRRSATQNAART-TVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 553 ~l~~~y~~~r~~~~~~~~~~-t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~ 609 (663)
.+...+... .+ +.|....++|.|+++|.|++++.|+.+|+.+|+.++-
T Consensus 203 ~i~~~~~~~---------gv~S~Ra~i~llraARa~AaL~Gr~~V~~~dv~~Aa~lvL 251 (584)
T PRK13406 203 ALCAAAAAL---------GIASLRAPLLALRAARAAAALAGRTAVEEEDLALAARLVL 251 (584)
T ss_pred HHHHHHHHh---------CCCCcCHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 766555432 23 7899999999999999999999999999999998863
No 24
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.84 E-value=4.9e-21 Score=200.07 Aligned_cols=203 Identities=24% Similarity=0.278 Sum_probs=160.4
Q ss_pred cccccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeecc
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCID 416 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iD 416 (663)
.+.+|||.|++||||..+||+||++++| +++..++.+....+..+.+++. |...-..|.+.+||||.+|+|
T Consensus 245 Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLD 324 (550)
T COG3604 245 SDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKGAFTGAINTRRGRFELADGGTLFLD 324 (550)
T ss_pred CCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcccccccccchhccCcceeecCCCeEech
Confidence 3489999999999999999999999885 7888888777666655555554 444556899999999999999
Q ss_pred cccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCcccccc-C-CChhhhhhhhh
Q 006051 417 EFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNT-T-LSGPLLSRFDI 487 (663)
Q Consensus 417 Eid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~-~-l~~aLl~RFdl 487 (663)
||..|+.+.|.+|++++.+|.+ .+-|...+++.+++||||||.. |+|..+.+++.+. . .-|||+.|=+.
T Consensus 325 EIGelPL~lQaKLLRvLQegEi--eRvG~~r~ikVDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~D 402 (550)
T COG3604 325 EIGELPLALQAKLLRVLQEGEI--ERVGGDRTIKVDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPED 402 (550)
T ss_pred hhccCCHHHHHHHHHHHhhcce--eecCCCceeEEEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCcc
Confidence 9999999999999999999987 7889999999999999999983 8999888887774 2 23677777776
Q ss_pred hhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccC
Q 006051 488 VLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQ 567 (663)
Q Consensus 488 i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~ 567 (663)
+..+ +.|.+.... ..-. .-.-.++++|.+.|.+|
T Consensus 403 IplL------------A~~Fle~~~-----------------------~~~g-r~~l~ls~~Al~~L~~y---------- 436 (550)
T COG3604 403 IPLL------------AGYFLEKFR-----------------------RRLG-RAILSLSAEALELLSSY---------- 436 (550)
T ss_pred HHHH------------HHHHHHHHH-----------------------HhcC-CcccccCHHHHHHHHcC----------
Confidence 6654 554443221 1111 01346899999999999
Q ss_pred CCccccHhHHHHHHHHHHHHHhccCCCccChhhH
Q 006051 568 NAARTTVRMLESLIRLAQAHARLMFRNEVTRLDA 601 (663)
Q Consensus 568 ~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv 601 (663)
.||+|+|+||++++-|...| ...++.+|.
T Consensus 437 -~wPGNVRELen~veRavlla----~~~~~~~d~ 465 (550)
T COG3604 437 -EWPGNVRELENVVERAVLLA----GRLTRRGDL 465 (550)
T ss_pred -CCCCcHHHHHHHHHHHHHHh----cccCCCcce
Confidence 89999999999999876666 345566664
No 25
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.83 E-value=5e-21 Score=203.82 Aligned_cols=231 Identities=19% Similarity=0.229 Sum_probs=176.8
Q ss_pred ccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCc
Q 006051 311 GICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGL 387 (663)
Q Consensus 311 si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl 387 (663)
.....++|....-..+.-.+..- -..+.+||+.|++||||..+||++|+.++| +|+..++++....+
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kv----------A~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKV----------APSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 35667888765444443322110 123489999999999999999999999887 89998888877666
Q ss_pred eEEEeecC------chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC
Q 006051 388 TVTAVKDG------GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 388 ~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
..+.+++. |...-..|.+..|+||++|||||..|+.+.|..|+++++++.+ .+-|...+.+.+++||||||.
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~--~rvG~~~~i~vdvRiIaaT~~ 285 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEMPLELQVKLLRVLQEREF--ERVGGNKPIKVDVRIIAATNR 285 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccCCHHHHHHHHHHHHcCee--EecCCCcccceeeEEEeecCc
Confidence 65555553 3344567899999999999999999999999999999999987 778888889999999999998
Q ss_pred C-------CCCCCCCcccccc-CC-ChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHH
Q 006051 462 K-------GHYDPNLSLSVNT-TL-SGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLR 532 (663)
Q Consensus 462 ~-------g~~d~~~~~~~~~-~l-~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~ 532 (663)
. |+|.++.+++.|. .+ -|||+.|=+.|..+ ++|+++..
T Consensus 286 dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L------------~~hfl~~~--------------------- 332 (464)
T COG2204 286 DLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLL------------AEHFLKRF--------------------- 332 (464)
T ss_pred CHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHH------------HHHHHHHH---------------------
Confidence 3 8999988888884 22 26788888777755 55555433
Q ss_pred HHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHH
Q 006051 533 RYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAIT 603 (663)
Q Consensus 533 ~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~ 603 (663)
..... .-.+.++++|...|..| +||+|+|+|+++++.+...+. .+.++.+|+..
T Consensus 333 --~~~~~-~~~~~~s~~a~~~L~~y-----------~WPGNVREL~N~ver~~il~~---~~~i~~~~l~~ 386 (464)
T COG2204 333 --AAELG-RPPKGFSPEALAALLAY-----------DWPGNVRELENVVERAVILSE---GPEIEVEDLPL 386 (464)
T ss_pred --HHHcC-CCCCCCCHHHHHHHHhC-----------CCChHHHHHHHHHHHHHhcCC---ccccchhhccc
Confidence 22221 23567999999999999 899999999999987655544 56677777653
No 26
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.83 E-value=2e-20 Score=186.83 Aligned_cols=246 Identities=21% Similarity=0.239 Sum_probs=183.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecCc-hhHhhhhhhhhccCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDGG-EWMLEAGALVLADGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~~-~~~~~~g~l~~a~~gvl~iDEid~l~~ 423 (663)
.++|+.|++||||..+||+++..++| +++..++.+.......+.+++.. ....+.|.+..|+||.+|+|||..|++
T Consensus 228 APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeIgEmSp 307 (511)
T COG3283 228 APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEIGEMSP 307 (511)
T ss_pred CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehhhhcCH
Confidence 68999999999999999999999886 57776665554443333444331 123357889999999999999999999
Q ss_pred hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCcccccc---CCChhhhhhhhhhhhhcC
Q 006051 424 HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNT---TLSGPLLSRFDIVLVLLD 493 (663)
Q Consensus 424 ~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~---~l~~aLl~RFdli~~l~d 493 (663)
..|.+|++++.+|++ .+-|.......+++||+||..+ |.|..+..++.|. ++ |||++|-+.+..+
T Consensus 308 ~lQaKLLRFL~DGtF--RRVGee~Ev~vdVRVIcatq~nL~~lv~~g~fReDLfyRLNVLtl~~-PpLRer~~di~pL-- 382 (511)
T COG3283 308 RLQAKLLRFLNDGTF--RRVGEDHEVHVDVRVICATQVNLVELVQKGKFREDLFYRLNVLTLNL-PPLRERPQDIMPL-- 382 (511)
T ss_pred HHHHHHHHHhcCCce--eecCCcceEEEEEEEEecccccHHHHHhcCchHHHHHHHhheeeecC-CccccCcccchHH--
Confidence 999999999999987 6778888888999999999762 7887777776663 22 5677776655543
Q ss_pred CCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCcccc
Q 006051 494 TKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTT 573 (663)
Q Consensus 494 ~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t 573 (663)
+++. +.++..... ...|+++++....|.+| .||++
T Consensus 383 ----------~e~F-----------------------v~q~s~elg-~p~pkl~~~~~~~L~~y-----------~WpGN 417 (511)
T COG3283 383 ----------AELF-----------------------VQQFSDELG-VPRPKLAADLLTVLTRY-----------AWPGN 417 (511)
T ss_pred ----------HHHH-----------------------HHHHHHHhC-CCCCccCHHHHHHHHHc-----------CCCcc
Confidence 3333 333333332 46799999999999999 89999
Q ss_pred HhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhhhhhhhhHhhhhhcCCCChhHHHHHHHHHHHHHhccCCc
Q 006051 574 VRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGNALHSNFTENPDLENAKQEKLILDKLRSFDE 653 (663)
Q Consensus 574 ~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 653 (663)
+|+|.+.+--|.+. +. ...++.+|+..+-. + ... ..+......+.+.-+..+|+++|++|
T Consensus 418 VRqL~N~iyRA~s~--~E-g~~l~i~~i~Lp~~-------~--~~~---~~~~~~~~gsLdei~~~fE~~VL~rl----- 477 (511)
T COG3283 418 VRQLKNAIYRALTL--LE-GYELRIEDILLPDY-------D--AAT---VVGEDALEGSLDEIVSRFERSVLTRL----- 477 (511)
T ss_pred HHHHHHHHHHHHHH--hc-cCccchhhcccCCc-------c--ccc---ccchhhccCCHHHHHHHHHHHHHHHH-----
Confidence 99999999755443 33 56778887763221 1 111 12234456788888999999999999
Q ss_pred ccccccccCC
Q 006051 654 FPDIISTQEL 663 (663)
Q Consensus 654 ~~~~~~~~~~ 663 (663)
|-+|||||+|
T Consensus 478 y~~yPStRkL 487 (511)
T COG3283 478 YRSYPSTRKL 487 (511)
T ss_pred HHhCCcHHHH
Confidence 9999999975
No 27
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.79 E-value=2.6e-18 Score=181.56 Aligned_cols=277 Identities=21% Similarity=0.179 Sum_probs=194.4
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCccc-
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS- 384 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~- 384 (663)
..+...+.+.++|.+.++..++.++..| .|+||.|+||||||++++.+|+..+.+++...+....
T Consensus 16 ~~~~~~~~~~~~g~~~~~~~~l~a~~~~--------------~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~ 81 (329)
T COG0714 16 GKIRSELEKVVVGDEEVIELALLALLAG--------------GHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLL 81 (329)
T ss_pred HHHHhhcCCeeeccHHHHHHHHHHHHcC--------------CCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 3456667778999999999999999887 7999999999999999999999999888876654322
Q ss_pred -CCceEEEeec-----CchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 385 -AGLTVTAVKD-----GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 385 -~gl~~~~~~~-----~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
..++...... .+.+.+..|.+..+.++++++|||++.+++.+++|+++|+++.+++...+. ..++..+.++||
T Consensus 82 p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~-~~~~~~f~viaT 160 (329)
T COG0714 82 PSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTT-IRLPPPFIVIAT 160 (329)
T ss_pred HHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCC-cCCCCCCEEEEc
Confidence 1222221111 344555677887776689999999999999999999999999987764443 677889999999
Q ss_pred eCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFV 538 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 538 (663)
+||... .....++.|+++||.+.+.+..+........+..+....... .........++...+.+.-...
T Consensus 161 ~Np~e~-------~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~ 230 (329)
T COG0714 161 QNPGEY-------EGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDEL---DLESLVKPVLSDEELLRLQKEV 230 (329)
T ss_pred cCcccc-------CCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCcccccc---ccchhhhhhhCHHHHHHHHhhh
Confidence 998411 112468899999998777774443544444433332211100 0111223344444444443332
Q ss_pred HccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhh
Q 006051 539 KGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESS 611 (663)
Q Consensus 539 r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s 611 (663)
+ ...++++..+.+.......|.... ..+..+.|....++..+++.|.+..+..+..+|+.......-.+
T Consensus 231 ~---~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~ 299 (329)
T COG0714 231 K---KVPVSDEVIDYIVTLVAALREAPD-VALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAH 299 (329)
T ss_pred c---cCCchHHHHHHHHHHHHhhccccc-hhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhh
Confidence 2 456778888888777766665422 23456789999999999999999999999999998766554333
No 28
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.77 E-value=8.3e-18 Score=189.40 Aligned_cols=174 Identities=21% Similarity=0.184 Sum_probs=131.2
Q ss_pred hhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCc--------eeecCCcEEEEEeeCCCCCCCCCCcc
Q 006051 400 LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGL--------VTTLSTRTIIFGATNPKGHYDPNLSL 471 (663)
Q Consensus 400 ~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~--------~~~~~~~~~iiaatN~~g~~d~~~~~ 471 (663)
.++|.+..|++|++||||++.|++..|..|+++|+++.+.+..... ....++++.+|+++|+.
T Consensus 208 i~~G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~--------- 278 (608)
T TIGR00764 208 VEAGAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD--------- 278 (608)
T ss_pred CCCCceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH---------
Confidence 4689999999999999999999999999999999999987754311 23467899999999985
Q ss_pred ccccCCChhhhhhhh---hhhhhcCCC--ChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHcc-CCCc
Q 006051 472 SVNTTLSGPLLSRFD---IVLVLLDTK--NPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGY-FKPI 545 (663)
Q Consensus 472 ~~~~~l~~aLl~RFd---li~~l~d~~--~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~-~~p~ 545 (663)
....+.++|++||+ +.+.+.+.. +++....++.++.+ .++++ ..|.
T Consensus 279 -~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~---------------------------~~~r~G~l~~ 330 (608)
T TIGR00764 279 -DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQ---------------------------EVKKDGRIPH 330 (608)
T ss_pred -HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHH---------------------------HHHHhCCCCc
Confidence 11246679999999 655554432 22333333333322 22222 4678
Q ss_pred cCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 546 LTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 546 ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
++++|...|.++|... ...++.++++.|+|.+++|.|.++|+.+.++.|+.+||.+|+.......
T Consensus 331 ~s~~Av~~Li~~~~R~--ag~r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~ 395 (608)
T TIGR00764 331 FTRDAVEEIVREAQRR--AGRKDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLE 395 (608)
T ss_pred CCHHHHHHHHHHHHHH--HhcccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHH
Confidence 9999999998886543 4445578899999999999999999999999999999999998766543
No 29
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.77 E-value=1.5e-18 Score=166.81 Aligned_cols=203 Identities=24% Similarity=0.330 Sum_probs=126.2
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~ 391 (663)
-..+++||+.++..+-..+-....+ -..-.|+||+||||+|||+||+.+|+..+..+..+... .
T Consensus 22 ~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~---------~ 85 (233)
T PF05496_consen 22 SLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGP---------A 85 (233)
T ss_dssp SCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECC---------C
T ss_pred CHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccch---------h
Confidence 3457899999988765444321000 01126999999999999999999999998877543111 1
Q ss_pred eecCchhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeee-ccC---ceeecC-CcEEEEEeeCCCCCC
Q 006051 392 VKDGGEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVA-KAG---LVTTLS-TRTIIFGATNPKGHY 465 (663)
Q Consensus 392 ~~~~~~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~-k~g---~~~~~~-~~~~iiaatN~~g~~ 465 (663)
+...++. ++.+ .+..+-|+|||||+++++..++.|+.+||++.+.+. ..| ....++ ..+++|+||+..|
T Consensus 86 i~k~~dl---~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g-- 160 (233)
T PF05496_consen 86 IEKAGDL---AAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAG-- 160 (233)
T ss_dssp --SCHHH---HHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGC--
T ss_pred hhhHHHH---HHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccc--
Confidence 1111211 1112 134677999999999999999999999999998653 223 222232 5789999999875
Q ss_pred CCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCc
Q 006051 466 DPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPI 545 (663)
Q Consensus 466 d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ 545 (663)
.+++||++||.++..+.. ++.+.|.+.+......+.-.
T Consensus 161 ----------~ls~pLrdRFgi~~~l~~--------------------------------Y~~~el~~Iv~r~a~~l~i~ 198 (233)
T PF05496_consen 161 ----------LLSSPLRDRFGIVLRLEF--------------------------------YSEEELAKIVKRSARILNIE 198 (233)
T ss_dssp ----------CTSHCCCTTSSEEEE------------------------------------THHHHHHHHHHCCHCTT-E
T ss_pred ----------ccchhHHhhcceecchhc--------------------------------CCHHHHHHHHHHHHHHhCCC
Confidence 567799999998876633 34555566665554556777
Q ss_pred cCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHh
Q 006051 546 LTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHAR 589 (663)
Q Consensus 546 ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~ 589 (663)
+++++...|... .++|+|-...|+|-...+|.
T Consensus 199 i~~~~~~~Ia~r------------srGtPRiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 199 IDEDAAEEIARR------------SRGTPRIANRLLRRVRDFAQ 230 (233)
T ss_dssp E-HHHHHHHHHC------------TTTSHHHHHHHHHHHCCCCC
T ss_pred cCHHHHHHHHHh------------cCCChHHHHHHHHHHHHHHH
Confidence 888888877754 46789999888887655443
No 30
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.75 E-value=5.2e-17 Score=181.05 Aligned_cols=225 Identities=18% Similarity=0.206 Sum_probs=154.6
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc----------CCceEEeCCCc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLGS 382 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~----------~~~~~~~~~~~ 382 (663)
+.+++|++...+++..+++++ .+.|+||+||||||||++|+++++.+ ..+++...+.+
T Consensus 64 f~~iiGqs~~i~~l~~al~~~------------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~ 131 (531)
T TIGR02902 64 FDEIIGQEEGIKALKAALCGP------------NPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATT 131 (531)
T ss_pred HHHeeCcHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEcccc
Confidence 347999998888888777653 23799999999999999999998742 13455544322
Q ss_pred c---cCCce----EEE---------ee-cCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccC-
Q 006051 383 T---SAGLT----VTA---------VK-DGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAG- 444 (663)
Q Consensus 383 ~---~~gl~----~~~---------~~-~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g- 444 (663)
. ..++. .+. .. ..|....++|.+..|++|++||||++.|++..|+.|+++||++.+.+..+.
T Consensus 132 ~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~ 211 (531)
T TIGR02902 132 ARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYY 211 (531)
T ss_pred ccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccc
Confidence 1 11110 000 00 012223457888899999999999999999999999999999887653110
Q ss_pred --------------ceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhh
Q 006051 445 --------------LVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAE 510 (663)
Q Consensus 445 --------------~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~ 510 (663)
....+++++.+|+||+.. + ..+++++++|+..+. +.....
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~----p-------~~L~paLrsR~~~I~-f~pL~~-------------- 265 (531)
T TIGR02902 212 NSENPNIPSHIHDIFQNGLPADFRLIGATTRN----P-------EEIPPALRSRCVEIF-FRPLLD-------------- 265 (531)
T ss_pred cccCcccccchhhhcccCcccceEEEEEecCC----c-------ccCChHHhhhhheee-CCCCCH--------------
Confidence 013467889999888753 1 247789999985433 433332
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhc
Q 006051 511 GGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARL 590 (663)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l 590 (663)
+++..++...-+.....+++++.+.|..|. | +.|++.++++.|...|..
T Consensus 266 ------------------eei~~Il~~~a~k~~i~is~~al~~I~~y~-----------~--n~Rel~nll~~Aa~~A~~ 314 (531)
T TIGR02902 266 ------------------EEIKEIAKNAAEKIGINLEKHALELIVKYA-----------S--NGREAVNIVQLAAGIALG 314 (531)
T ss_pred ------------------HHHHHHHHHHHHHcCCCcCHHHHHHHHHhh-----------h--hHHHHHHHHHHHHHHHhh
Confidence 222222222212234578999988888762 3 479999999999988888
Q ss_pred cCCCccChhhHHHHHH
Q 006051 591 MFRNEVTRLDAITAIL 606 (663)
Q Consensus 591 ~~~~~V~~~Dv~~Ai~ 606 (663)
+.+..|+.+|+..++.
T Consensus 315 ~~~~~It~~dI~~vl~ 330 (531)
T TIGR02902 315 EGRKRILAEDIEWVAE 330 (531)
T ss_pred CCCcEEcHHHHHHHhC
Confidence 8888999999999975
No 31
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.75 E-value=3.9e-17 Score=159.62 Aligned_cols=216 Identities=22% Similarity=0.257 Sum_probs=159.8
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
.+.+||+.+|.-+-+.+-+...+ -..-=|+||+||||.|||+||..+|+..+..+-.+..
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r-------~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsG------------- 85 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKR-------GEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSG------------- 85 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhc-------CCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEeccc-------------
Confidence 36789999999988888663111 1122499999999999999999999987765543211
Q ss_pred cCchhHhhhhhhh-----hccCCeeecccccccChhhHHhHHHHHHhceeeeec--c--CceeecC-CcEEEEEeeCCCC
Q 006051 394 DGGEWMLEAGALV-----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAK--A--GLVTTLS-TRTIIFGATNPKG 463 (663)
Q Consensus 394 ~~~~~~~~~g~l~-----~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k--~--g~~~~~~-~~~~iiaatN~~g 463 (663)
....++|.+. +..+-|+|||||+++++..-+.|..+||+-.+.+.- . .....++ +.|++|+||...|
T Consensus 86 ---p~leK~gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G 162 (332)
T COG2255 86 ---PALEKPGDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAG 162 (332)
T ss_pred ---ccccChhhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeeccccc
Confidence 1111233332 346789999999999999999999999998876641 1 1222232 5789999999886
Q ss_pred CCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCC
Q 006051 464 HYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFK 543 (663)
Q Consensus 464 ~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~ 543 (663)
.++.||.+||.++..+..+..+ +|.+.+......+.
T Consensus 163 ------------~lt~PLrdRFGi~~rlefY~~~--------------------------------eL~~Iv~r~a~~l~ 198 (332)
T COG2255 163 ------------MLTNPLRDRFGIIQRLEFYTVE--------------------------------ELEEIVKRSAKILG 198 (332)
T ss_pred ------------cccchhHHhcCCeeeeecCCHH--------------------------------HHHHHHHHHHHHhC
Confidence 4667999999999887554444 44444433334567
Q ss_pred CccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 544 PILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 544 p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
-.+++++...|.+. .++|+|-...|+|-.+-.|..+....++..-+..|...+
T Consensus 199 i~i~~~~a~eIA~r------------SRGTPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 199 IEIDEEAALEIARR------------SRGTPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred CCCChHHHHHHHHh------------ccCCcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 77888888887764 467899999999999999999999999998888887665
No 32
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.72 E-value=2.5e-16 Score=161.58 Aligned_cols=208 Identities=18% Similarity=0.200 Sum_probs=138.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCC--ceEE---EeecC-chhHhhhhhhhhc--cCCeeeccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAG--LTVT---AVKDG-GEWMLEAGALVLA--DGGLCCIDEFD 419 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~g--l~~~---~~~~~-~~~~~~~g~l~~a--~~gvl~iDEid 419 (663)
.||||.|+||||||++++.+|+.++.+++.......... +... .++++ +......|.+..| .|+++++||+|
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEin 144 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEYD 144 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechhh
Confidence 689999999999999999999999988887654433221 2221 12232 2234467777654 67889999999
Q ss_pred ccChhhHHhHHHHHH-hceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChh
Q 006051 420 SMREHDRATIHEAME-QQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPE 498 (663)
Q Consensus 420 ~l~~~~~~~L~~~me-~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~ 498 (663)
..+++.+..|+.++| .+.+++...+....-+..+.+|||+||.|.-|..-.+.-...++.++++||-+++.+ ++++++
T Consensus 145 ~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~-~Yp~~e 223 (327)
T TIGR01650 145 AGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTL-NYLEHD 223 (327)
T ss_pred ccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEeeC-CCCCHH
Confidence 999999999999999 468877766666555678999999999865555445566678999999999877767 445544
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcc--cCCCccccHhH
Q 006051 499 WDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSA--TQNAARTTVRM 576 (663)
Q Consensus 499 ~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~--~~~~~~~t~R~ 576 (663)
....|.... ... + ....+++..+.+.+.....|... ..-...+|+|.
T Consensus 224 ~E~~Il~~~---~~~------------~----------------~~~~~~~i~~~mV~la~~tR~~~~~~~i~~~~SpR~ 272 (327)
T TIGR01650 224 NEAAIVLAK---AKG------------F----------------DDTEGKDIINAMVRVADMTRNAFINGDISTVMSPRT 272 (327)
T ss_pred HHHHHHHhh---ccC------------C----------------CccchHHHHHHHHHHHHHHHhhhccCCccccccHHH
Confidence 433332111 000 0 00012334444455555555421 12256789999
Q ss_pred HHHHHHHHHHH
Q 006051 577 LESLIRLAQAH 587 (663)
Q Consensus 577 Le~lirla~a~ 587 (663)
+..+.+.+...
T Consensus 273 li~w~~~~~~f 283 (327)
T TIGR01650 273 VITWAENAEIF 283 (327)
T ss_pred HHHHHHHHHhh
Confidence 98888776543
No 33
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.70 E-value=1.2e-16 Score=167.71 Aligned_cols=201 Identities=20% Similarity=0.243 Sum_probs=133.1
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
+.+|||.|++||||+.+|++++..++ .+++...+......+....+++. |......|.+..|++|++||||
T Consensus 22 ~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~~~g~~~ga~~~~~G~~~~a~gGtL~Lde 101 (329)
T TIGR02974 22 DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGHEAGAFTGAQKRHQGRFERADGGTLFLDE 101 (329)
T ss_pred CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhccccccccCcccccCCchhhCCCCEEEeCC
Confidence 37999999999999999999999876 47877776654332222222211 1112346778899999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh-hhhhcCCCC
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI-VLVLLDTKN 496 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl-i~~l~d~~~ 496 (663)
++.|+.+.|..|+++++++.+ .+.|.....+.++++|+|||..- ........+.+.|+.|+.. .+.++...+
T Consensus 102 i~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiI~at~~~l-----~~~~~~g~fr~dL~~rl~~~~i~lPpLRe 174 (329)
T TIGR02974 102 LATASLLVQEKLLRVIEYGEF--ERVGGSQTLQVDVRLVCATNADL-----PALAAEGRFRADLLDRLAFDVITLPPLRE 174 (329)
T ss_pred hHhCCHHHHHHHHHHHHcCcE--EecCCCceeccceEEEEechhhH-----HHHhhcCchHHHHHHHhcchhcCCCchhh
Confidence 999999999999999999876 45566667788999999999740 0001112344467777743 333422222
Q ss_pred hhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHh
Q 006051 497 PEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVR 575 (663)
Q Consensus 497 ~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R 575 (663)
...|- .++.|+ +.++.......+.+.++++|.+.|..| +||+|+|
T Consensus 175 R~eDI~~L~~~f-----------------------l~~~~~~~~~~~~~~ls~~a~~~L~~y-----------~WPGNvr 220 (329)
T TIGR02974 175 RQEDIMLLAEHF-----------------------AIRMARELGLPLFPGFTPQAREQLLEY-----------HWPGNVR 220 (329)
T ss_pred hhhhHHHHHHHH-----------------------HHHHHHHhCCCCCCCcCHHHHHHHHhC-----------CCCchHH
Confidence 11111 112222 222211111111157999999999999 8999999
Q ss_pred HHHHHHHHHHHHH
Q 006051 576 MLESLIRLAQAHA 588 (663)
Q Consensus 576 ~Le~lirla~a~A 588 (663)
+|+++++.+-..+
T Consensus 221 EL~n~i~~~~~~~ 233 (329)
T TIGR02974 221 ELKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHHHHHhC
Confidence 9999998765554
No 34
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.69 E-value=4.5e-16 Score=158.87 Aligned_cols=207 Identities=14% Similarity=0.138 Sum_probs=134.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCccc--CCceEEEe----------------ec--CchhHhhhhhhhh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS--AGLTVTAV----------------KD--GGEWMLEAGALVL 407 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~--~gl~~~~~----------------~~--~~~~~~~~g~l~~ 407 (663)
.|+||.||||||||++|+++|+..+.+++...+.... ..+..... +. ........|.+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 7899999999999999999999888887765443211 11111000 00 0001123566654
Q ss_pred --ccCCeeecccccccChhhHHhHHHHHHhceeeeeccC---ceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhh
Q 006051 408 --ADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAG---LVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLL 482 (663)
Q Consensus 408 --a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g---~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl 482 (663)
+.|++++|||+++++++.++.|+++|+++.+++...+ .....+.++.+|+|+||.. +.....++++|+
T Consensus 102 A~~~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~-------~~g~~~l~~aL~ 174 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVE-------YAGVHETQDALL 174 (262)
T ss_pred HHHcCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCcc-------ccceecccHHHH
Confidence 5789999999999999999999999999988775432 3344677899999999851 111124578999
Q ss_pred hhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHH
Q 006051 483 SRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQR 562 (663)
Q Consensus 483 ~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r 562 (663)
+||- .+.+ +.++.+....|. ..+ ..++++..+.+.+.+...|
T Consensus 175 ~R~~-~i~i-~~P~~~~e~~Il----~~~--------------------------------~~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 175 DRLI-TIFM-DYPDIDTETAIL----RAK--------------------------------TDVAEDSAATIVRLVREFR 216 (262)
T ss_pred hhcE-EEEC-CCCCHHHHHHHH----HHh--------------------------------hCCCHHHHHHHHHHHHHHH
Confidence 9994 3444 445544333221 111 1245566777777777788
Q ss_pred hcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHH
Q 006051 563 RSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITA 604 (663)
Q Consensus 563 ~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~A 604 (663)
.. ......++|++..+.| +.+.+.++..|+++|+...
T Consensus 217 ~~--~~~~~~~~r~~i~~~~---~~~~~~~~~~~~~~~~~~~ 253 (262)
T TIGR02640 217 AS--GDEITSGLRASLMIAE---VATQQDIPVDVDDEDFVDL 253 (262)
T ss_pred hh--CCccCCcHHHHHHHHH---HHHHcCCCCCCCcHHHHHH
Confidence 32 1123445777755554 5555577999999998754
No 35
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.68 E-value=3.1e-16 Score=173.07 Aligned_cols=210 Identities=17% Similarity=0.222 Sum_probs=133.0
Q ss_pred ccccccccCCCchHHHHHHHHHHh--------cC---CceEEeCCCcccCCceEEEeecC--chh-----Hhhhhhhhhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL--------SN---RSVITTGLGSTSAGLTVTAVKDG--GEW-----MLEAGALVLA 408 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~--------~~---~~~~~~~~~~~~~gl~~~~~~~~--~~~-----~~~~g~l~~a 408 (663)
+.+|||.|++||||+.+|+++++. ++ .+++..+++.....+..+.+++. |.+ ...+|.+..|
T Consensus 242 ~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A 321 (538)
T PRK15424 242 SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIA 321 (538)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCccccccCccccccCCchhcc
Confidence 379999999999999999999987 44 47888777654433322223321 211 1246888899
Q ss_pred cCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCcccccc-CC-Ch
Q 006051 409 DGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNT-TL-SG 479 (663)
Q Consensus 409 ~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~-~l-~~ 479 (663)
++|++|||||+.|+...|..|+++++++.+ .+.|.....+.++++|+|||.. |.|.++..++.+. .+ -|
T Consensus 322 ~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~--~r~G~~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lP 399 (538)
T PRK15424 322 HGGTLFLDEIGEMPLPLQTRLLRVLEEKEV--TRVGGHQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLP 399 (538)
T ss_pred CCCEEEEcChHhCCHHHHHHHHhhhhcCeE--EecCCCceeccceEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCC
Confidence 999999999999999999999999999886 4567667778999999999974 4454433222221 00 13
Q ss_pred hhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHH
Q 006051 480 PLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQ 559 (663)
Q Consensus 480 aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~ 559 (663)
||.+|-+.+..+ +.|+++. + ++ .....+++++...+..+..
T Consensus 400 PLReR~eDI~~L------------~~~fl~~-----------------------~---~~-~~~~~~~~~a~~~~~~a~~ 440 (538)
T PRK15424 400 PLRERVADILPL------------AESFLKQ-----------------------S---LA-ALSAPFSAALRQGLQQCET 440 (538)
T ss_pred ChhhchhHHHHH------------HHHHHHH-----------------------H---HH-HcCCCCCHHHHHhhHHHHH
Confidence 344443332222 3333322 1 11 1222366666644444333
Q ss_pred HHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhH
Q 006051 560 LQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDA 601 (663)
Q Consensus 560 ~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv 601 (663)
.+..- +||+|+|+|+++++.+...+.-.-...++.+|+
T Consensus 441 ~L~~y----~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 441 LLLHY----DWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred HHHhC----CCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 33222 899999999999987655433221234555554
No 36
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.67 E-value=2.3e-16 Score=162.55 Aligned_cols=224 Identities=18% Similarity=0.165 Sum_probs=136.2
Q ss_pred HhhccccccCchhHHHHHHHHHHhC--CceeecCCCCc-cccccccccccCCCchHHHHHHHHHHhcCC-------ceEE
Q 006051 308 ILRGICPQVFGLFTVKLAVALTLIG--GVQHVDASGTK-VRGESHLLLVGDPGTGKSQFLKFAAKLSNR-------SVIT 377 (663)
Q Consensus 308 l~~si~p~i~G~~~~K~aill~l~~--g~~~~~~~~~~-~r~~~~iLL~G~pGtGKs~lar~ia~~~~~-------~~~~ 377 (663)
+.+.+.-++.|++.+|+.+.-.... -.+.....|.. ..+..|+||+||||||||++|+++++.+.. +++.
T Consensus 16 ~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~ 95 (284)
T TIGR02880 16 VLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVS 95 (284)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEE
Confidence 4444555679999999987432111 00111112222 123469999999999999999888876432 2333
Q ss_pred eCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeeccccccc---------ChhhHHhHHHHHHhceeeeeccCceee
Q 006051 378 TGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSM---------REHDRATIHEAMEQQTISVAKAGLVTT 448 (663)
Q Consensus 378 ~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l---------~~~~~~~L~~~me~~~i~i~k~g~~~~ 448 (663)
.... .+... ..+... ....+.+..|.+||+||||++.+ +.+.++.|++.|+++.
T Consensus 96 v~~~----~l~~~-~~g~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~----------- 158 (284)
T TIGR02880 96 VTRD----DLVGQ-YIGHTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQR----------- 158 (284)
T ss_pred ecHH----HHhHh-hcccch-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCC-----------
Confidence 2211 01100 011111 11234566788999999999987 3455778899998653
Q ss_pred cCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCH
Q 006051 449 LSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPL 528 (663)
Q Consensus 449 ~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 528 (663)
.++.+|+|+++.. ...-..+.++|.+||+..+.++++..++...+ ..++++
T Consensus 159 --~~~~vI~a~~~~~-------~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I-~~~~l~------------------- 209 (284)
T TIGR02880 159 --DDLVVILAGYKDR-------MDSFFESNPGFSSRVAHHVDFPDYSEAELLVI-AGLMLK------------------- 209 (284)
T ss_pred --CCEEEEEeCCcHH-------HHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH-HHHHHH-------------------
Confidence 3567888887640 00112356799999998888866653333222 222221
Q ss_pred HHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCC
Q 006051 529 AMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFR 593 (663)
Q Consensus 529 ~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~ 593 (663)
...+.+++++.+.+.+|....+. .+|++|.|++.++++.+......++.
T Consensus 210 ------------~~~~~l~~~a~~~L~~~l~~~~~----~~~~GN~R~lrn~ve~~~~~~~~r~~ 258 (284)
T TIGR02880 210 ------------EQQYRFSAEAEEAFADYIALRRT----QPHFANARSIRNAIDRARLRQANRLF 258 (284)
T ss_pred ------------HhccccCHHHHHHHHHHHHHhCC----CCCCChHHHHHHHHHHHHHHHHHHHh
Confidence 12346778888888887654443 37999999999999988776655543
No 37
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.66 E-value=1.2e-16 Score=140.40 Aligned_cols=126 Identities=24% Similarity=0.363 Sum_probs=82.3
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEeCCCc--ccCCceEEEeec--CchhHhhhhhhhhccCCeeecccccccChh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS--TSAGLTVTAVKD--GGEWMLEAGALVLADGGLCCIDEFDSMREH 424 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~--~~~gl~~~~~~~--~~~~~~~~g~l~~a~~gvl~iDEid~l~~~ 424 (663)
||||.|+||+|||++++++|+..+..+....... ..+.++...+.+ .+++.+..|.+. .+|+++|||++.++.
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif---~~ill~DEiNrappk 77 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF---TNILLADEINRAPPK 77 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT----SSEEEEETGGGS-HH
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh---hceeeecccccCCHH
Confidence 8999999999999999999999988776554321 112233333333 256666777776 469999999999999
Q ss_pred hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh
Q 006051 425 DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 425 ~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd 486 (663)
.|++|+++|+++.+++ .|....++..+.||||.||... .....++.|+++||-
T Consensus 78 tQsAlLeam~Er~Vt~--~g~~~~lp~pf~ViATqNp~e~-------~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 78 TQSALLEAMEERQVTI--DGQTYPLPDPFFVIATQNPVEQ-------EGTYPLPEAQLDRFM 130 (131)
T ss_dssp HHHHHHHHHHHSEEEE--TTEEEE--SS-EEEEEE-TT---------S------HHHHTTSS
T ss_pred HHHHHHHHHHcCeEEe--CCEEEECCCcEEEEEecCcccc-------CceecCCHHHhcccc
Confidence 9999999999999865 6888899999999999999621 122478999999994
No 38
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.66 E-value=2.5e-16 Score=165.17 Aligned_cols=197 Identities=20% Similarity=0.230 Sum_probs=139.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC----ceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~----~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
.|||++|++||||+.+|+.++..+.+ +++..+++.....+..+.+++. |...-++|.+..|+||++|+||
T Consensus 102 ~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDE 181 (403)
T COG1221 102 LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDE 181 (403)
T ss_pred CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchheecCCCEEehhh
Confidence 79999999999999999999987665 6777777766555444334432 4444568999999999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-C-CCCCCCccccccCCChhhhh-hhhhhhhhcCC
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-G-HYDPNLSLSVNTTLSGPLLS-RFDIVLVLLDT 494 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g-~~d~~~~~~~~~~l~~aLl~-RFdli~~l~d~ 494 (663)
|..|++..|..|+.+||+|.+ .+-|.....+.++++++|||-. + ..-. ...|.+ |+.+++.+++.
T Consensus 182 I~~LP~~~Q~kLl~~le~g~~--~rvG~~~~~~~dVRli~AT~~~l~~~~~~----------g~dl~~rl~~~~I~LPpL 249 (403)
T COG1221 182 IHRLPPEGQEKLLRVLEEGEY--RRVGGSQPRPVDVRLICATTEDLEEAVLA----------GADLTRRLNILTITLPPL 249 (403)
T ss_pred hhhCCHhHHHHHHHHHHcCce--EecCCCCCcCCCceeeeccccCHHHHHHh----------hcchhhhhcCceecCCCh
Confidence 999999999999999999987 5566677889999999999964 1 0000 013444 55555555333
Q ss_pred CChhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCcccc
Q 006051 495 KNPEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTT 573 (663)
Q Consensus 495 ~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t 573 (663)
.....|. .+++|. ++.+..... .-.+..+++|...|..| +||+|
T Consensus 250 rER~~Di~~L~e~F-----------------------l~~~~~~l~-~~~~~~~~~a~~~L~~y-----------~~pGN 294 (403)
T COG1221 250 RERKEDILLLAEHF-----------------------LKSEARRLG-LPLSVDSPEALRALLAY-----------DWPGN 294 (403)
T ss_pred hhchhhHHHHHHHH-----------------------HHHHHHHcC-CCCCCCCHHHHHHHHhC-----------CCCCc
Confidence 3221111 122333 333322221 12334557899999988 89999
Q ss_pred HhHHHHHHHHHHHHHhcc
Q 006051 574 VRMLESLIRLAQAHARLM 591 (663)
Q Consensus 574 ~R~Le~lirla~a~A~l~ 591 (663)
+|+|++++..+.+.+...
T Consensus 295 irELkN~Ve~~~~~~~~~ 312 (403)
T COG1221 295 IRELKNLVERAVAQASGE 312 (403)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 999999999999888643
No 39
>CHL00181 cbbX CbbX; Provisional
Probab=99.66 E-value=3.8e-16 Score=160.70 Aligned_cols=218 Identities=21% Similarity=0.195 Sum_probs=133.8
Q ss_pred HHHhhccccccCchhHHHHHHHHHH----hCCceeecCCCC-ccccccccccccCCCchHHHHHHHHHHhcCC-------
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTL----IGGVQHVDASGT-KVRGESHLLLVGDPGTGKSQFLKFAAKLSNR------- 373 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l----~~g~~~~~~~~~-~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~------- 373 (663)
..+.+.+.++++|++.+|+.|.-.. ...... ..|. ..++..|+||+||||||||++|+++++.+..
T Consensus 15 ~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~--~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~ 92 (287)
T CHL00181 15 QEVLDILDEELVGLAPVKTRIREIAALLLIDRLRK--NLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKG 92 (287)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHH--HcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCC
Confidence 5677888899999999998764221 111111 1122 1234578999999999999999999986432
Q ss_pred ceEEeCCCcccCCceEEEeecCchh-HhhhhhhhhccCCeeeccccccc---------ChhhHHhHHHHHHhceeeeecc
Q 006051 374 SVITTGLGSTSAGLTVTAVKDGGEW-MLEAGALVLADGGLCCIDEFDSM---------REHDRATIHEAMEQQTISVAKA 443 (663)
Q Consensus 374 ~~~~~~~~~~~~gl~~~~~~~~~~~-~~~~g~l~~a~~gvl~iDEid~l---------~~~~~~~L~~~me~~~i~i~k~ 443 (663)
+++..... .+... .. |+. ....+.+..|.+||+||||++.+ ..+.+..|++.|+++.
T Consensus 93 ~~~~v~~~----~l~~~-~~--g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~------ 159 (287)
T CHL00181 93 HLLTVTRD----DLVGQ-YI--GHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQR------ 159 (287)
T ss_pred ceEEecHH----HHHHH-Hh--ccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCC------
Confidence 12221100 00000 00 111 11134556688999999999986 4556778889998643
Q ss_pred CceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCC
Q 006051 444 GLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLT 523 (663)
Q Consensus 444 g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 523 (663)
.++.||+|+++.. +..-..+.|+|.+||+.++.+.++..++...++ .++++.
T Consensus 160 -------~~~~vI~ag~~~~-------~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~-~~~l~~------------- 211 (287)
T CHL00181 160 -------DDLVVIFAGYKDR-------MDKFYESNPGLSSRIANHVDFPDYTPEELLQIA-KIMLEE------------- 211 (287)
T ss_pred -------CCEEEEEeCCcHH-------HHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHH-HHHHHH-------------
Confidence 3467888877530 001123457999999999988776554443332 222211
Q ss_pred CCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHH
Q 006051 524 DIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHA 588 (663)
Q Consensus 524 ~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A 588 (663)
....+++++...+..++...+. .++.++.|.+.+++.-+....
T Consensus 212 ------------------~~~~l~~~~~~~L~~~i~~~~~----~~~~GNaR~vrn~ve~~~~~~ 254 (287)
T CHL00181 212 ------------------QQYQLTPEAEKALLDYIKKRME----QPLFANARSVRNALDRARMRQ 254 (287)
T ss_pred ------------------hcCCCChhHHHHHHHHHHHhCC----CCCCccHHHHHHHHHHHHHHH
Confidence 1335677777777777654332 257788999999997665543
No 40
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=9.4e-16 Score=154.62 Aligned_cols=217 Identities=24% Similarity=0.216 Sum_probs=134.6
Q ss_pred HHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHh
Q 006051 321 TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWML 400 (663)
Q Consensus 321 ~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 400 (663)
.+++++.|.|..+ .......+.++..||||||||||||+|||++|+.....|+....+. |....+-+ |. .+
T Consensus 162 EirE~VELPL~~P---ElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSE----lVqKYiGE-Ga-Rl 232 (406)
T COG1222 162 EIREVVELPLKNP---ELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSE----LVQKYIGE-GA-RL 232 (406)
T ss_pred HHHHHhcccccCH---HHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHH----HHHHHhcc-ch-HH
Confidence 4555666655432 1112234677889999999999999999999999888887642211 11111111 11 11
Q ss_pred hhhhhhhc---cCCeeecccccccC-----------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCC
Q 006051 401 EAGALVLA---DGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 401 ~~g~l~~a---~~gvl~iDEid~l~-----------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d 466 (663)
--..+.+| .+.|+||||||.+. .+.|-.|++.+.|- +|-. -..++-||+|||+...+|
T Consensus 233 VRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql------DGFD--~~~nvKVI~ATNR~D~LD 304 (406)
T COG1222 233 VRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL------DGFD--PRGNVKVIMATNRPDILD 304 (406)
T ss_pred HHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc------cCCC--CCCCeEEEEecCCccccC
Confidence 12223334 57899999999973 34677788887652 1221 135678999999986555
Q ss_pred CCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCC
Q 006051 467 PNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKP 544 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p 544 (663)
|||++ |||-.+.++ .|+.+-+ ..|++.|.....- .+.++.+.|-+.
T Consensus 305 ------------PALLRPGR~DRkIEfp-lPd~~gR----~~Il~IHtrkM~l-----~~dvd~e~la~~---------- 352 (406)
T COG1222 305 ------------PALLRPGRFDRKIEFP-LPDEEGR----AEILKIHTRKMNL-----ADDVDLELLARL---------- 352 (406)
T ss_pred ------------hhhcCCCcccceeecC-CCCHHHH----HHHHHHHhhhccC-----ccCcCHHHHHHh----------
Confidence 48998 999999885 5554443 3445555432111 111222211111
Q ss_pred ccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHh
Q 006051 545 ILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIES 610 (663)
Q Consensus 545 ~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~ 610 (663)
....|--++.+++.-|-..|--.-|..|+.+|...|+.-+..
T Consensus 353 ------------------------~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 353 ------------------------TEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVK 394 (406)
T ss_pred ------------------------cCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHh
Confidence 112344567777777788888888999999999999977644
No 41
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.65 E-value=8.7e-16 Score=169.84 Aligned_cols=211 Identities=17% Similarity=0.221 Sum_probs=135.9
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC--chhH-----hhhhhhhhccCCeeecc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG--GEWM-----LEAGALVLADGGLCCID 416 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~--~~~~-----~~~g~l~~a~~gvl~iD 416 (663)
+.+|||.|++||||+++|++++..++ .+++..+++.....+..+.+++. |.+. ..+|.+..|++|++|||
T Consensus 235 ~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLd 314 (526)
T TIGR02329 235 DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLD 314 (526)
T ss_pred CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhcCCcccccccccccccccchhhcCCceEEec
Confidence 37999999999999999999998765 47888777655433322223321 2221 24678889999999999
Q ss_pred cccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCccccccCCChhhhhhhh-hh
Q 006051 417 EFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNTTLSGPLLSRFD-IV 488 (663)
Q Consensus 417 Eid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~~l~~aLl~RFd-li 488 (663)
|++.|+...|..|+++++++.+ .+.|.....+.++++|+|||.. |.|.+ .|+.|+. +.
T Consensus 315 eI~~Lp~~~Q~~Ll~~L~~~~~--~r~g~~~~~~~dvRiIaat~~~l~~~v~~g~fr~------------dL~~rL~~~~ 380 (526)
T TIGR02329 315 EIGEMPLPLQTRLLRVLEEREV--VRVGGTEPVPVDVRVVAATHCALTTAVQQGRFRR------------DLFYRLSILR 380 (526)
T ss_pred ChHhCCHHHHHHHHHHHhcCcE--EecCCCceeeecceEEeccCCCHHHHhhhcchhH------------HHHHhcCCcE
Confidence 9999999999999999999886 4556666678899999999974 33333 4444443 22
Q ss_pred hhhcCCCChhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccC
Q 006051 489 LVLLDTKNPEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQ 567 (663)
Q Consensus 489 ~~l~d~~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~ 567 (663)
+.+++..+...|- .++.|++.. + ++ .....++++|.+.+...+..+..-
T Consensus 381 I~lPPLReR~eDI~~L~~~fl~~-----------------------~---~~-~~~~~~~~~a~~~~~~~~~~L~~y--- 430 (526)
T TIGR02329 381 IALPPLRERPGDILPLAAEYLVQ-----------------------A---AA-ALRLPDSEAAAQVLAGVADPLQRY--- 430 (526)
T ss_pred EeCCCchhchhHHHHHHHHHHHH-----------------------H---HH-HcCCCCCHHHHHHhHHHHHHHHhC---
Confidence 2222211111111 123333322 1 11 122348888888733322222221
Q ss_pred CCccccHhHHHHHHHHHHHHHhccCCCccChhhHH
Q 006051 568 NAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAI 602 (663)
Q Consensus 568 ~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~ 602 (663)
+||+|+|+|+++++.+...+.-.-...++.+|+.
T Consensus 431 -~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 431 -PWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred -CCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 8999999999999877665432224577888764
No 42
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.64 E-value=5.9e-16 Score=172.70 Aligned_cols=238 Identities=21% Similarity=0.284 Sum_probs=149.0
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecC--ch----hHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG--GE----WMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~--~~----~~~~~g~l~~a~~gvl~iDE 417 (663)
+.+|||.|++||||+.+|++++..+.+ +++...+.........+.+++. |. .....|.+..|++|++||||
T Consensus 227 ~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~Lde 306 (520)
T PRK10820 227 DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDE 306 (520)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeC
Confidence 378999999999999999999987653 5677666543321111111211 11 11235778889999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCccccccCCChhhhhhhh-hhh
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNTTLSGPLLSRFD-IVL 489 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~~l~~aLl~RFd-li~ 489 (663)
++.|+...|..|+++++++.+ .+.|.....+.++++|+||+.. |.|.+ .|+.|+. +.+
T Consensus 307 I~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~vRiI~st~~~l~~l~~~g~f~~------------dL~~rL~~~~i 372 (520)
T PRK10820 307 IGEMSPRMQAKLLRFLNDGTF--RRVGEDHEVHVDVRVICATQKNLVELVQKGEFRE------------DLYYRLNVLTL 372 (520)
T ss_pred hhhCCHHHHHHHHHHHhcCCc--ccCCCCcceeeeeEEEEecCCCHHHHHHcCCccH------------HHHhhcCeeEE
Confidence 999999999999999999875 4455555567788999999863 34443 4555544 222
Q ss_pred hhcCCCChhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCC
Q 006051 490 VLLDTKNPEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQN 568 (663)
Q Consensus 490 ~l~d~~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~ 568 (663)
.++...+...|. .++.|+ ++++.... ..-.|.++++|.+.|..|
T Consensus 373 ~lPpLreR~~Di~~L~~~f-----------------------l~~~~~~~-g~~~~~ls~~a~~~L~~y----------- 417 (520)
T PRK10820 373 NLPPLRDRPQDIMPLTELF-----------------------VARFADEQ-GVPRPKLAADLNTVLTRY----------- 417 (520)
T ss_pred eCCCcccChhHHHHHHHHH-----------------------HHHHHHHc-CCCCCCcCHHHHHHHhcC-----------
Confidence 232222111111 112222 23322111 112468999999999998
Q ss_pred CccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhhhhhhhhHhhhhhcCCCChhHHHHHHHHHHHHHh
Q 006051 569 AARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGNALHSNFTENPDLENAKQEKLILDKL 648 (663)
Q Consensus 569 ~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 648 (663)
+||+|+|+|++++.-+-..+. ...++.+|+... .. .... ..+ ......+.++.++++|+.+++.+
T Consensus 418 ~WPGNvreL~nvl~~a~~~~~---~~~i~~~~~~l~----~~-~~~~----~~~---~~~~~~~L~~~~~~~E~~~i~~~ 482 (520)
T PRK10820 418 GWPGNVRQLKNAIYRALTQLE---GYELRPQDILLP----DY-DAAV----AVG---EDAMEGSLDEITSRFERSVLTRL 482 (520)
T ss_pred CCCCHHHHHHHHHHHHHHhCC---CCcccHHHcCCc----cc-cccc----ccc---cccccCCHHHHHHHHHHHHHHHH
Confidence 899999999999986655443 457788885310 00 0000 000 01122345566888999988887
No 43
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.63 E-value=7.8e-16 Score=161.87 Aligned_cols=202 Identities=18% Similarity=0.232 Sum_probs=131.9
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
+.+|||+|++||||+.+|++++..++ .+++...+...........+++. |......|.+..|++|++||||
T Consensus 29 ~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~ 108 (326)
T PRK11608 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDE 108 (326)
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHccccccccCCcccccCCchhccCCCeEEeCC
Confidence 37999999999999999999999876 46777776654322111111111 1112236778889999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh-hhhhcCCCC
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI-VLVLLDTKN 496 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl-i~~l~d~~~ 496 (663)
++.++...|..|+++++.+.+ .+.|.....+.++.+|+|+|..- ........+.+.|+.||.. .+.++....
T Consensus 109 i~~L~~~~Q~~L~~~l~~~~~--~~~g~~~~~~~~~RiI~~s~~~l-----~~l~~~g~f~~dL~~~l~~~~i~lPpLRe 181 (326)
T PRK11608 109 LATAPMLVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADL-----PAMVAEGKFRADLLDRLAFDVVQLPPLRE 181 (326)
T ss_pred hhhCCHHHHHHHHHHHhcCcE--EeCCCCceeeccEEEEEeCchhH-----HHHHHcCCchHHHHHhcCCCEEECCChhh
Confidence 999999999999999999875 34455566778899999998740 0001112344567777743 333432222
Q ss_pred hhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHh
Q 006051 497 PEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVR 575 (663)
Q Consensus 497 ~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R 575 (663)
...|- .++.|+ ++++.......+.|.++++|.+.|..| +||+|+|
T Consensus 182 R~eDI~~L~~~f-----------------------l~~~~~~~~~~~~~~~s~~al~~L~~y-----------~WPGNvr 227 (326)
T PRK11608 182 RQSDIMLMAEHF-----------------------AIQMCRELGLPLFPGFTERARETLLNY-----------RWPGNIR 227 (326)
T ss_pred hhhhHHHHHHHH-----------------------HHHHHHHhCCCCCCCCCHHHHHHHHhC-----------CCCcHHH
Confidence 11111 112222 222211111112367999999999999 8999999
Q ss_pred HHHHHHHHHHHHHh
Q 006051 576 MLESLIRLAQAHAR 589 (663)
Q Consensus 576 ~Le~lirla~a~A~ 589 (663)
+|+++++.+...+.
T Consensus 228 EL~~vl~~a~~~~~ 241 (326)
T PRK11608 228 ELKNVVERSVYRHG 241 (326)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999997665443
No 44
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.61 E-value=1.9e-15 Score=168.59 Aligned_cols=236 Identities=17% Similarity=0.178 Sum_probs=145.5
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEE
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~ 390 (663)
..++|+...-+.+.-.+..- -..+.+|||+|++||||+.+|++++..++ .+++..++......+..+
T Consensus 187 ~~iig~s~~~~~~~~~i~~~----------a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~ 256 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVV----------AASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAES 256 (509)
T ss_pred CceeecCHHHHHHHHHHHHH----------hCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHH
Confidence 45788775444443333211 11247999999999999999999999876 467776665443222111
Q ss_pred EeecC------chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCC
Q 006051 391 AVKDG------GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGH 464 (663)
Q Consensus 391 ~~~~~------~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~ 464 (663)
.+++. |...-..|.+..|+||++||||++.|+.+.|..|+++++++.+ .+.|.....+.++++|+|||..-
T Consensus 257 ~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiI~~t~~~l- 333 (509)
T PRK05022 257 ELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEI--QRVGSDRSLRVDVRVIAATNRDL- 333 (509)
T ss_pred HhcCccccccCCCcccCCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCE--eeCCCCcceecceEEEEecCCCH-
Confidence 22221 1111246778889999999999999999999999999999876 44455566778999999999740
Q ss_pred CCCCCccccccCCChhhhhhhhhh-hhhcCCCChhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccC
Q 006051 465 YDPNLSLSVNTTLSGPLLSRFDIV-LVLLDTKNPEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYF 542 (663)
Q Consensus 465 ~d~~~~~~~~~~l~~aLl~RFdli-~~l~d~~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~ 542 (663)
........+...|+.|+..+ +.++...+...|. .++.|++. ++..... .-
T Consensus 334 ----~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~-----------------------~~~~~~~-~~ 385 (509)
T PRK05022 334 ----REEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLE-----------------------QNRARLG-LR 385 (509)
T ss_pred ----HHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHH-----------------------HHHHHcC-CC
Confidence 00001112333455555432 2222211111111 12333332 2211100 12
Q ss_pred CCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCC---ccChhhH
Q 006051 543 KPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRN---EVTRLDA 601 (663)
Q Consensus 543 ~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~---~V~~~Dv 601 (663)
.+.++++|.+.|..| +||+|+|+|+++++.+...|.-...+ .++.+|+
T Consensus 386 ~~~~s~~a~~~L~~y-----------~WPGNvrEL~~~i~ra~~~~~~~~~~~~~~i~~~~l 436 (509)
T PRK05022 386 SLRLSPAAQAALLAY-----------DWPGNVRELEHVISRAALLARARGAGRIVTLEAQHL 436 (509)
T ss_pred CCCCCHHHHHHHHhC-----------CCCCcHHHHHHHHHHHHHhcCCCccCccceecHHHc
Confidence 467999999999999 89999999999999887776633211 4555554
No 45
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.61 E-value=2e-15 Score=173.73 Aligned_cols=206 Identities=14% Similarity=0.128 Sum_probs=138.7
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC---chhHhhhhhhhhccCCeeecccccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG---GEWMLEAGALVLADGGLCCIDEFDS 420 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~---~~~~~~~g~l~~a~~gvl~iDEid~ 420 (663)
+.+|||.|++||||+.+|+++++.++ .+++...+......+..+.+++. +.....+|.+..|++|++||||++.
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~ 427 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEY 427 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhh
Confidence 47899999999999999999999876 47877776654322211112211 1112246778889999999999999
Q ss_pred cChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCccccccC--CChhhhhhhhhhhhh
Q 006051 421 MREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNTT--LSGPLLSRFDIVLVL 491 (663)
Q Consensus 421 l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~~--l~~aLl~RFdli~~l 491 (663)
|+.+.|..|+++++++.+ .+.|.....+.++++|+|||.. |.|.++..+..+.. --|||.+|-+.+..+
T Consensus 428 l~~~~Q~~Ll~~l~~~~~--~~~~~~~~~~~~~riI~~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L 505 (638)
T PRK11388 428 LSPELQSALLQVLKTGVI--TRLDSRRLIPVDVRVIATTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPAL 505 (638)
T ss_pred CCHHHHHHHHHHHhcCcE--EeCCCCceEEeeEEEEEeccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHH
Confidence 999999999999999876 3455555667889999999973 45555433333211 114455543322221
Q ss_pred cCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCcc
Q 006051 492 LDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAAR 571 (663)
Q Consensus 492 ~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~ 571 (663)
..+++ +++.... ...+.++++|.+.|..| +||
T Consensus 506 ------------~~~~l-----------------------~~~~~~~--~~~~~~s~~a~~~L~~y-----------~WP 537 (638)
T PRK11388 506 ------------VNNKL-----------------------RSLEKRF--STRLKIDDDALARLVSY-----------RWP 537 (638)
T ss_pred ------------HHHHH-----------------------HHHHHHh--CCCCCcCHHHHHHHHcC-----------CCC
Confidence 22222 2221111 11357999999999999 899
Q ss_pred ccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 572 TTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 572 ~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
+|+|+|+++++.+...+. ...++.+|+...+
T Consensus 538 GNvreL~~~l~~~~~~~~---~~~i~~~~lp~~~ 568 (638)
T PRK11388 538 GNDFELRSVIENLALSSD---NGRIRLSDLPEHL 568 (638)
T ss_pred ChHHHHHHHHHHHHHhCC---CCeecHHHCchhh
Confidence 999999999997665443 4578888876554
No 46
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.61 E-value=1.1e-14 Score=163.47 Aligned_cols=165 Identities=21% Similarity=0.205 Sum_probs=121.2
Q ss_pred hhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccC--------ceeecCCcEEEEEeeCCCCCCCCCCccc
Q 006051 401 EAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAG--------LVTTLSTRTIIFGATNPKGHYDPNLSLS 472 (663)
Q Consensus 401 ~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g--------~~~~~~~~~~iiaatN~~g~~d~~~~~~ 472 (663)
++|.+..|+||++||||++.|++..|..|+++|+++.+.+.... .....+.++.+|+++|+.-
T Consensus 218 ~~G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l--------- 288 (637)
T PRK13765 218 EAGAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA--------- 288 (637)
T ss_pred CCCceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH---------
Confidence 78999999999999999999999999999999999998663221 1334678999999999851
Q ss_pred cccCCChhhhhhhh---hhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHcc-----CCC
Q 006051 473 VNTTLSGPLLSRFD---IVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGY-----FKP 544 (663)
Q Consensus 473 ~~~~l~~aLl~RFd---li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~-----~~p 544 (663)
...+.+.|++||. ..+.+.+.. .-+.+..+.|+.+..+. -.|
T Consensus 289 -l~~~dpdL~~rfk~~~v~v~f~~~~-----------------------------~d~~e~~~~~~~~iaqe~~~~G~l~ 338 (637)
T PRK13765 289 -LENMHPALRSRIKGYGYEVYMRDTM-----------------------------EDTPENRRKLVRFVAQEVKRDGKIP 338 (637)
T ss_pred -HHhhhHHHHHHhccCeEEEEccccc-----------------------------CCCHHHHHHHHHHHHHHhhhccCCC
Confidence 1123567888885 233232111 12334455555544322 356
Q ss_pred ccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 545 ILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 545 ~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
.++++|...|.+||... ...++......|+|..|+|.|...|+...++.|+.+|+..|+.
T Consensus 339 ~f~~eAVa~LI~~~~R~--ag~r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~ 398 (637)
T PRK13765 339 HFDRDAVEEIIREAKRR--AGRKGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKK 398 (637)
T ss_pred CCCHHHHHHHHHHHHHH--hCCccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHH
Confidence 89999999999987643 3333445566899999999999999999999999999998874
No 47
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=2e-14 Score=152.04 Aligned_cols=224 Identities=23% Similarity=0.264 Sum_probs=141.6
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
..+++|++.+++.+...+..... .-.+..|+||+||||||||++|+++++.....+....... .
T Consensus 24 ~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~---------~ 87 (328)
T PRK00080 24 LDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPA---------L 87 (328)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEeccc---------c
Confidence 34689999999888766643100 0122368999999999999999999998876554321110 0
Q ss_pred ecCchhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeee--ccCc---eeecCCcEEEEEeeCCCCCCC
Q 006051 393 KDGGEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVA--KAGL---VTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 393 ~~~~~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~--k~g~---~~~~~~~~~iiaatN~~g~~d 466 (663)
...+. + .+.+ .+..++|+||||++.++....+.++.+|++..+.+. .... ....-..+.+|+|||+.+
T Consensus 88 ~~~~~--l-~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~--- 161 (328)
T PRK00080 88 EKPGD--L-AAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG--- 161 (328)
T ss_pred cChHH--H-HHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc---
Confidence 00011 0 1111 134678999999999999888889999998765432 1111 111113478899998763
Q ss_pred CCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCcc
Q 006051 467 PNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPIL 546 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~l 546 (663)
.++++|.+||+.++.+..+..++....+.. .-......+
T Consensus 162 ---------~l~~~L~sRf~~~~~l~~~~~~e~~~il~~--------------------------------~~~~~~~~~ 200 (328)
T PRK00080 162 ---------LLTSPLRDRFGIVQRLEFYTVEELEKIVKR--------------------------------SARILGVEI 200 (328)
T ss_pred ---------cCCHHHHHhcCeeeecCCCCHHHHHHHHHH--------------------------------HHHHcCCCc
Confidence 356689999988777754443333332221 111234456
Q ss_pred CHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhh
Q 006051 547 TKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESS 611 (663)
Q Consensus 547 s~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s 611 (663)
++++...|... ...++|.+..+++.....|.......|+.+++..+...++..
T Consensus 201 ~~~~~~~ia~~------------~~G~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~~~~ 253 (328)
T PRK00080 201 DEEGALEIARR------------SRGTPRIANRLLRRVRDFAQVKGDGVITKEIADKALDMLGVD 253 (328)
T ss_pred CHHHHHHHHHH------------cCCCchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCC
Confidence 77776666654 234568788888777777766556678888888887665333
No 48
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.60 E-value=1.4e-14 Score=148.59 Aligned_cols=172 Identities=25% Similarity=0.288 Sum_probs=113.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhh-ccCCeeecccccccChhhH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL-ADGGLCCIDEFDSMREHDR 426 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~-a~~gvl~iDEid~l~~~~~ 426 (663)
.+++|+||||||||+||+.+++.....|....... + .+++-.+..-++-.... -.+-|+||||+.+++..+|
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~--~-----gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQ 121 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT--S-----GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQ 121 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc--c-----cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhh
Confidence 68999999999999999999999888887643211 1 12222222222212221 2356999999999999999
Q ss_pred HhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHH
Q 006051 427 ATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSH 506 (663)
Q Consensus 427 ~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~ 506 (663)
++++..||+|++ .+||||...- .+.+.+||+||. .+|.+....+++..+.+.+-
T Consensus 122 D~lLp~vE~G~i---------------ilIGATTENP----------sF~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra 175 (436)
T COG2256 122 DALLPHVENGTI---------------ILIGATTENP----------SFELNPALLSRA-RVFELKPLSSEDIKKLLKRA 175 (436)
T ss_pred hhhhhhhcCCeE---------------EEEeccCCCC----------CeeecHHHhhhh-heeeeecCCHHHHHHHHHHH
Confidence 999999999997 7888884431 146778999998 56667676666666665543
Q ss_pred HhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHH
Q 006051 507 ILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQA 586 (663)
Q Consensus 507 il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a 586 (663)
+......- ....+.++++|.+.|... ..+..|..-+++.++.-
T Consensus 176 ~~~~~rgl-------------------------~~~~~~i~~~a~~~l~~~------------s~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 176 LLDEERGL-------------------------GGQIIVLDEEALDYLVRL------------SNGDARRALNLLELAAL 218 (436)
T ss_pred HhhhhcCC-------------------------CcccccCCHHHHHHHHHh------------cCchHHHHHHHHHHHHH
Confidence 33322110 011345777787777765 23446666666666655
Q ss_pred HHh
Q 006051 587 HAR 589 (663)
Q Consensus 587 ~A~ 589 (663)
.++
T Consensus 219 ~~~ 221 (436)
T COG2256 219 SAE 221 (436)
T ss_pred hcC
Confidence 554
No 49
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.59 E-value=4.5e-15 Score=167.15 Aligned_cols=210 Identities=23% Similarity=0.264 Sum_probs=138.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
+.+|||.|++||||+.+|++++..++ .+++...+......+....+++. |......|.+..|++|++||||
T Consensus 219 ~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~lde 298 (534)
T TIGR01817 219 NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDE 298 (534)
T ss_pred CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEec
Confidence 47999999999999999999999865 47777776554322211112211 1111235678889999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhh-hhhcCCCC
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIV-LVLLDTKN 496 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli-~~l~d~~~ 496 (663)
++.++.+.|..|+++++++.+. +.|.....+.++++|+|||..- ........+.+.|+.|+..+ +.++...+
T Consensus 299 i~~L~~~~Q~~Ll~~l~~~~~~--~~~~~~~~~~~~riI~~s~~~l-----~~~~~~~~f~~~L~~rl~~~~i~lPpLre 371 (534)
T TIGR01817 299 IGEISPAFQAKLLRVLQEGEFE--RVGGNRTLKVDVRLVAATNRDL-----EEAVAKGEFRADLYYRINVVPIFLPPLRE 371 (534)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--ECCCCceEeecEEEEEeCCCCH-----HHHHHcCCCCHHHHHHhcCCeeeCCCccc
Confidence 9999999999999999998763 3444455677899999998740 00111223445677777543 22322221
Q ss_pred hhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHh
Q 006051 497 PEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVR 575 (663)
Q Consensus 497 ~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R 575 (663)
...|- .++.|++ +++... ....+.++++|.+.|..| +||+|+|
T Consensus 372 R~eDi~~L~~~~l-----------------------~~~~~~--~~~~~~~s~~a~~~L~~~-----------~WPGNvr 415 (534)
T TIGR01817 372 RREDIPLLAEAFL-----------------------EKFNRE--NGRPLTITPSAIRVLMSC-----------KWPGNVR 415 (534)
T ss_pred ccccHHHHHHHHH-----------------------HHHHHH--cCCCCCCCHHHHHHHHhC-----------CCCChHH
Confidence 11111 2233332 222111 112367999999999999 8999999
Q ss_pred HHHHHHHHHHHHHhccCCCccChhhHH
Q 006051 576 MLESLIRLAQAHARLMFRNEVTRLDAI 602 (663)
Q Consensus 576 ~Le~lirla~a~A~l~~~~~V~~~Dv~ 602 (663)
+|+++++.+-..+. ...|+.+|+.
T Consensus 416 EL~~v~~~a~~~~~---~~~I~~~~l~ 439 (534)
T TIGR01817 416 ELENCLERTATLSR---SGTITRSDFS 439 (534)
T ss_pred HHHHHHHHHHHhCC---CCcccHHHCc
Confidence 99999997765544 5678888864
No 50
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.59 E-value=3.9e-15 Score=143.37 Aligned_cols=224 Identities=19% Similarity=0.167 Sum_probs=128.4
Q ss_pred hccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceE
Q 006051 310 RGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (663)
Q Consensus 310 ~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~ 389 (663)
+....+|+||+.+|+..-+-+--- .....-|.| .+.|||++||||||||++|+++|..+..+++...... |..
T Consensus 117 ~it~ddViGqEeAK~kcrli~~yL-enPe~Fg~W--APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~----liG 189 (368)
T COG1223 117 DITLDDVIGQEEAKRKCRLIMEYL-ENPERFGDW--APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE----LIG 189 (368)
T ss_pred cccHhhhhchHHHHHHHHHHHHHh-hChHHhccc--CcceeEEECCCCccHHHHHHHHhcccCCceEEechHH----HHH
Confidence 334678999999988654432110 000111222 2479999999999999999999999988887753211 111
Q ss_pred EEeecCchhHhh-hhhhhhccCCeeecccccccChh------------hHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 390 TAVKDGGEWMLE-AGALVLADGGLCCIDEFDSMREH------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 390 ~~~~~~~~~~~~-~g~l~~a~~gvl~iDEid~l~~~------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
..+-++....-+ -.....+.++|+||||+|.+.-+ ..++|+.-|+ |+. -+-.+..|
T Consensus 190 ehVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelD---------gi~--eneGVvtI 258 (368)
T COG1223 190 EHVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELD---------GIK--ENEGVVTI 258 (368)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhcc---------Ccc--cCCceEEE
Confidence 111111000000 01112357899999999997533 2345555554 222 24456789
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHH
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIY 536 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 536 (663)
||||.+..+ .++++|||.--+.+.-+.+++...++...
T Consensus 259 aaTN~p~~L------------D~aiRsRFEeEIEF~LP~~eEr~~ile~y------------------------------ 296 (368)
T COG1223 259 AATNRPELL------------DPAIRSRFEEEIEFKLPNDEERLEILEYY------------------------------ 296 (368)
T ss_pred eecCChhhc------------CHHHHhhhhheeeeeCCChHHHHHHHHHH------------------------------
Confidence 999987444 45999999988887555544443333221
Q ss_pred HHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhH-HHHHHHHHHHHHhccCCCccChhhHHHHHHH
Q 006051 537 FVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRM-LESLIRLAQAHARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 537 ~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~-Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l 607 (663)
++.. .-.+... .+.+.+- ...+|-|. -|.+++.|--.|-...++.|+.+|+..|..-
T Consensus 297 -~k~~-Plpv~~~-~~~~~~~-----------t~g~SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 297 -AKKF-PLPVDAD-LRYLAAK-----------TKGMSGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred -HHhC-CCccccC-HHHHHHH-----------hCCCCchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 1211 1111111 1111111 11122332 3567777777788889999999999998864
No 51
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=8.4e-15 Score=148.57 Aligned_cols=243 Identities=19% Similarity=0.160 Sum_probs=135.5
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
.+|.|++.+|+-|-.+.+-...-......-.|+...||++||||||||+||+++|...+-.||.+... .++. ..+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSss----tltS-KwR 286 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSS----TLTS-KWR 286 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechh----hhhh-hhc
Confidence 46789887665444443332211111112356678899999999999999999999998877764321 1221 112
Q ss_pred cCchhHhhhhhhhh---ccCCeeecccccccC------------hhhHHhHHHHHHhceeeeeccCceeec--CCcEEEE
Q 006051 394 DGGEWMLEAGALVL---ADGGLCCIDEFDSMR------------EHDRATIHEAMEQQTISVAKAGLVTTL--STRTIIF 456 (663)
Q Consensus 394 ~~~~~~~~~g~l~~---a~~gvl~iDEid~l~------------~~~~~~L~~~me~~~i~i~k~g~~~~~--~~~~~ii 456 (663)
+..+.... =.+.+ ..+.++||||||.+- ....+.|+--|+- ...++ ...+.|+
T Consensus 287 GeSEKlvR-lLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG---------~~~t~e~~k~VmVL 356 (491)
T KOG0738|consen 287 GESEKLVR-LLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDG---------VQGTLENSKVVMVL 356 (491)
T ss_pred cchHHHHH-HHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhc---------cccccccceeEEEE
Confidence 22211111 11122 257899999999973 1233445555542 11111 2457899
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCC---CCCCCCCCHHHHHH
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDT---EPLTDIWPLAMLRR 533 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~---~~~~~~~~~~~l~~ 533 (663)
||||.+... ..||++||.-.+++ ..|+.+.+..+.+..+........... ......++.+++..
T Consensus 357 AATN~PWdi------------DEAlrRRlEKRIyI-PLP~~~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~n 423 (491)
T KOG0738|consen 357 AATNFPWDI------------DEALRRRLEKRIYI-PLPDAEARSALIKILLRSVELDDPVNLEDLAERSEGYSGADITN 423 (491)
T ss_pred eccCCCcch------------HHHHHHHHhhheee-eCCCHHHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHHH
Confidence 999998544 45999999998888 556666666555544443322111000 01112233333333
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhh
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMT 613 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~ 613 (663)
.+.-| + ...+|+. -...+.+++ ...|+=....-|+.+|++.|++-+..|..
T Consensus 424 vCreA-----------s-------m~~mRR~----i~g~~~~ei-------~~lakE~~~~pv~~~Dfe~Al~~v~pSvs 474 (491)
T KOG0738|consen 424 VCREA-----------S-------MMAMRRK----IAGLTPREI-------RQLAKEEPKMPVTNEDFEEALRKVRPSVS 474 (491)
T ss_pred HHHHH-----------H-------HHHHHHH----HhcCCcHHh-------hhhhhhccccccchhhHHHHHHHcCcCCC
Confidence 33221 1 1223322 122345554 23355555578999999999998887764
No 52
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.8e-14 Score=157.19 Aligned_cols=247 Identities=23% Similarity=0.231 Sum_probs=147.9
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeec
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD 394 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~ 394 (663)
+|.|.+.+|..|+-.+--+.++..--+..+|....||||||||||||.+||++|....-.|+...... |....+-+
T Consensus 673 DVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPE----LLNMYVGq 748 (953)
T KOG0736|consen 673 DVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPE----LLNMYVGQ 748 (953)
T ss_pred cccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHH----HHHHHhcc
Confidence 45799999999997765544443333444566689999999999999999999998877776642110 11000111
Q ss_pred CchhHhh-hhhhhhccCCeeecccccccChhh-------------HHhHHHHHHhceeeeeccCceeecCCcEEEEEeeC
Q 006051 395 GGEWMLE-AGALVLADGGLCCIDEFDSMREHD-------------RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN 460 (663)
Q Consensus 395 ~~~~~~~-~g~l~~a~~gvl~iDEid~l~~~~-------------~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN 460 (663)
+.+.+-+ ....-.|.++|+|+||+|.+.+.. ...|+.-|+ |....-..++.||||||
T Consensus 749 SE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELD---------gls~~~s~~VFViGATN 819 (953)
T KOG0736|consen 749 SEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELD---------GLSDSSSQDVFVIGATN 819 (953)
T ss_pred hHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhh---------cccCCCCCceEEEecCC
Confidence 1111111 011123678999999999986542 223333333 33333456789999999
Q ss_pred CCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 006051 461 PKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFV 538 (663)
Q Consensus 461 ~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 538 (663)
++...|| +|++ |||-.+.+....+.+....+.+.+.+....+.. ++ |. ..|
T Consensus 820 RPDLLDp------------ALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLded---------Vd---L~---eiA 872 (953)
T KOG0736|consen 820 RPDLLDP------------ALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDED---------VD---LV---EIA 872 (953)
T ss_pred CccccCh------------hhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCC---------cC---HH---HHH
Confidence 9866665 8888 999999998777777766666666555443211 22 22 223
Q ss_pred HccCCCccCHHHH-HHHHHHH-HHHHhcccCCCccccHhHHHHHHHHHHHHHhc-cCCCccChhhHHHHHHHHHhhhhh
Q 006051 539 KGYFKPILTKEAE-KVISSYY-QLQRRSATQNAARTTVRMLESLIRLAQAHARL-MFRNEVTRLDAITAILCIESSMTT 614 (663)
Q Consensus 539 r~~~~p~ls~ea~-~~l~~~y-~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l-~~~~~V~~~Dv~~Ai~l~~~s~~~ 614 (663)
+ .+.|.+|-.-. .+..+.. .++++. ++.+++.+ .+++.. ..+=.|+.+|...|..-+..|+..
T Consensus 873 k-~cp~~~TGADlYsLCSdA~l~AikR~---------i~~ie~g~---~~~~e~~~~~v~V~~eDflks~~~l~PSvS~ 938 (953)
T KOG0736|consen 873 K-KCPPNMTGADLYSLCSDAMLAAIKRT---------IHDIESGT---ISEEEQESSSVRVTMEDFLKSAKRLQPSVSE 938 (953)
T ss_pred h-hCCcCCchhHHHHHHHHHHHHHHHHH---------HHHhhhcc---ccccccCCceEEEEHHHHHHHHHhcCCcccH
Confidence 3 56788886433 3333322 222221 22232222 222222 223357999999999888777755
No 53
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.58 E-value=4.1e-14 Score=148.38 Aligned_cols=220 Identities=25% Similarity=0.305 Sum_probs=136.9
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
.+++|++.++..+...+.+... ......|++|+||||||||++++.+++.....+....... ..
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~---------~~ 67 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPA---------LE 67 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccch---------hc
Confidence 3689999999887776643100 0122358999999999999999999998765543321110 00
Q ss_pred cCchhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeee-ccC----ceeecCCcEEEEEeeCCCCCCCC
Q 006051 394 DGGEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVA-KAG----LVTTLSTRTIIFGATNPKGHYDP 467 (663)
Q Consensus 394 ~~~~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~-k~g----~~~~~~~~~~iiaatN~~g~~d~ 467 (663)
..+.. .+.+ ....++++||||++.++++.++.|+.+|++....+. .++ ........+.++++||..+
T Consensus 68 ~~~~l---~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~---- 140 (305)
T TIGR00635 68 KPGDL---AAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAG---- 140 (305)
T ss_pred CchhH---HHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCcc----
Confidence 00111 1111 124578999999999999999999999997664332 111 1111123477888888763
Q ss_pred CCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccC
Q 006051 468 NLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILT 547 (663)
Q Consensus 468 ~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls 547 (663)
.+.+++++||..++.+..+..++....+. ..-......++
T Consensus 141 --------~l~~~l~sR~~~~~~l~~l~~~e~~~il~--------------------------------~~~~~~~~~~~ 180 (305)
T TIGR00635 141 --------MLTSPLRDRFGIILRLEFYTVEELAEIVS--------------------------------RSAGLLNVEIE 180 (305)
T ss_pred --------ccCHHHHhhcceEEEeCCCCHHHHHHHHH--------------------------------HHHHHhCCCcC
Confidence 35568999998777664443333322222 11112244577
Q ss_pred HHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 548 KEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 548 ~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
+++.+.|.+. ...++|.+..+++.+...|.......++.+++..++..+
T Consensus 181 ~~al~~ia~~------------~~G~pR~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~l 229 (305)
T TIGR00635 181 PEAALEIARR------------SRGTPRIANRLLRRVRDFAQVRGQKIINRDIALKALEML 229 (305)
T ss_pred HHHHHHHHHH------------hCCCcchHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 7777666654 123467777777776667766555678888888877654
No 54
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.58 E-value=7.2e-15 Score=157.80 Aligned_cols=226 Identities=19% Similarity=0.217 Sum_probs=135.4
Q ss_pred cccccCchhHHHHHHHHHHhCCceeec---CC-CCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcc-cCC
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVD---AS-GTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST-SAG 386 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~---~~-~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~-~~g 386 (663)
+...|+|++.+|+++..++.....+.. .. ........|+||+||||||||++|+++|+.++.+++....... ..|
T Consensus 69 L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~g 148 (412)
T PRK05342 69 LDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAG 148 (412)
T ss_pred HhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCC
Confidence 334589999999999887742111110 00 0112245799999999999999999999999888877654321 112
Q ss_pred ceEEEeecC--chhHhhhhhhhhccCCeeecccccccChh--------------hHHhHHHHHHhceeeeeccCceeecC
Q 006051 387 LTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLS 450 (663)
Q Consensus 387 l~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~~--------------~~~~L~~~me~~~i~i~k~g~~~~~~ 450 (663)
......... +......+.+..+.+||+||||+|+++.. .|.+|+++||...+.+...|....-.
T Consensus 149 yvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~ 228 (412)
T PRK05342 149 YVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQ 228 (412)
T ss_pred cccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCC
Confidence 111000000 00001123455678999999999999753 78999999997666665545443334
Q ss_pred CcEEEEEeeCC----CCCCCC------------------C-Cc---------cc--------cccCCChhhhhhhhhhhh
Q 006051 451 TRTIIFGATNP----KGHYDP------------------N-LS---------LS--------VNTTLSGPLLSRFDIVLV 490 (663)
Q Consensus 451 ~~~~iiaatN~----~g~~d~------------------~-~~---------~~--------~~~~l~~aLl~RFdli~~ 490 (663)
.++.+|+|+|. .|.|.- . .. +. ....+.|.|+.|+|.++.
T Consensus 229 ~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~ 308 (412)
T PRK05342 229 QEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVAT 308 (412)
T ss_pred CCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeee
Confidence 67888999998 254421 0 00 00 001256788888888877
Q ss_pred hcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHH-HHHccCCCccCHHHHHHHHHH
Q 006051 491 LLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIY-FVKGYFKPILTKEAEKVISSY 557 (663)
Q Consensus 491 l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~r~~~~p~ls~ea~~~l~~~ 557 (663)
+.....+...+++.... ...+++|.. +..+.+...+++++.+.|.+.
T Consensus 309 f~~L~~~~L~~Il~~~~--------------------~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~ 356 (412)
T PRK05342 309 LEELDEEALVRILTEPK--------------------NALVKQYQKLFEMDGVELEFTDEALEAIAKK 356 (412)
T ss_pred cCCCCHHHHHHHHHHHH--------------------HHHHHHHHHHHHhCCcEEEECHHHHHHHHHh
Confidence 75555544444332110 022333332 233456778999998888764
No 55
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.57 E-value=2.9e-15 Score=137.98 Aligned_cols=129 Identities=29% Similarity=0.433 Sum_probs=90.2
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEeCCCc--ccCCceEEEeecCchhHhhhhhhhhc--cCCeeecccccccChh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS--TSAGLTVTAVKDGGEWMLEAGALVLA--DGGLCCIDEFDSMREH 424 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~--~~~gl~~~~~~~~~~~~~~~g~l~~a--~~gvl~iDEid~l~~~ 424 (663)
||||+||||||||++++.+++..+.+++...... +...+........+......|.+..+ ++++++|||+++++++
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~ 80 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPE 80 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHH
Confidence 6899999999999999999999988876654433 22233333332234444556666654 7899999999999999
Q ss_pred hHHhHHHHHHhceeeeeccCceeecCC------cEEEEEeeCCCCCCCCCCccccccCCChhhhhhh
Q 006051 425 DRATIHEAMEQQTISVAKAGLVTTLST------RTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRF 485 (663)
Q Consensus 425 ~~~~L~~~me~~~i~i~k~g~~~~~~~------~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RF 485 (663)
.+..|+.+++++.+.+...+.....+. .+.+|||+|+.+ .....+++||++||
T Consensus 81 v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~--------~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 81 VLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD--------KGRKELSPALLDRF 139 (139)
T ss_dssp HHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST----------TTTTCHHHHTT-
T ss_pred HHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC--------CCcCcCCHHHHhhC
Confidence 999999999999987665554444443 499999999974 12247889999998
No 56
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.6e-15 Score=154.32 Aligned_cols=228 Identities=19% Similarity=0.140 Sum_probs=127.4
Q ss_pred ccccccCchhHHHHHHHHH---HhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCc
Q 006051 311 GICPQVFGLFTVKLAVALT---LIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGL 387 (663)
Q Consensus 311 si~p~i~G~~~~K~aill~---l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl 387 (663)
--+.++.|.+++|..+..- |-.+ .+...-|.+ -+..|||+||||||||+|||++|..++.+||......... .
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP-~kftrLGGK--LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdE-m 376 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDP-TKFTRLGGK--LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDE-M 376 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCc-HHhhhccCc--CCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhh-h
Confidence 3367889999888776532 2221 111112222 2468999999999999999999999999998743221110 0
Q ss_pred eEEEeecCchhHhh--hhhhhhccCCeeecccccccChh----hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC
Q 006051 388 TVTAVKDGGEWMLE--AGALVLADGGLCCIDEFDSMREH----DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 388 ~~~~~~~~~~~~~~--~g~l~~a~~gvl~iDEid~l~~~----~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
.-+-|....+ ..+.-...++|+||||||.+... ++....+.+.|--+ .-+|- .-+..+.||||||.
T Consensus 377 ----~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLv--EmDGF--~qNeGiIvigATNf 448 (752)
T KOG0734|consen 377 ----FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLV--EMDGF--KQNEGIIVIGATNF 448 (752)
T ss_pred ----hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHH--HhcCc--CcCCceEEEeccCC
Confidence 0011111110 00011125799999999997432 22111122221111 11221 12567799999998
Q ss_pred CCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 006051 462 KGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVK 539 (663)
Q Consensus 462 ~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r 539 (663)
+..+| +||.+ |||..+.++.+.-.-+.+++..|+-+... ... ++...| ||
T Consensus 449 pe~LD------------~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~-~~~---------VD~~ii------AR 500 (752)
T KOG0734|consen 449 PEALD------------KALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL-DED---------VDPKII------AR 500 (752)
T ss_pred hhhhh------------HHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCc-ccC---------CCHhHh------cc
Confidence 85544 47887 99999988443333333333333322111 100 111110 11
Q ss_pred ccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 540 GYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 540 ~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
+...+|--.|++|+-.|.-.|..++...|+..|.+.|-.
T Consensus 501 ----------------------------GT~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~akD 539 (752)
T KOG0734|consen 501 ----------------------------GTPGFSGADLANLVNQAALKAAVDGAEMVTMKHLEFAKD 539 (752)
T ss_pred ----------------------------CCCCCchHHHHHHHHHHHHHHHhcCcccccHHHHhhhhh
Confidence 122345567888888888888888888888888877754
No 57
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.56 E-value=2.7e-14 Score=145.94 Aligned_cols=216 Identities=21% Similarity=0.215 Sum_probs=125.0
Q ss_pred ccCchhHHHHHHHHHHhCC--ceeecCCCCc-cccccccccccCCCchHHHHHHHHHHhcCC-------ceEEeCCCccc
Q 006051 315 QVFGLFTVKLAVALTLIGG--VQHVDASGTK-VRGESHLLLVGDPGTGKSQFLKFAAKLSNR-------SVITTGLGSTS 384 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g--~~~~~~~~~~-~r~~~~iLL~G~pGtGKs~lar~ia~~~~~-------~~~~~~~~~~~ 384 (663)
+++|++.+|+.+--..... .......|.. ..+..|+||+||||||||++|+++++.+.. .++.....
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 5789999998775221110 0111112222 223479999999999999999999986421 11111000
Q ss_pred CCceEEEeecCchhH-hhhhhhhhccCCeeecccccccC--------hhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 385 AGLTVTAVKDGGEWM-LEAGALVLADGGLCCIDEFDSMR--------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 385 ~gl~~~~~~~~~~~~-~~~g~l~~a~~gvl~iDEid~l~--------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
.+..... |+.. ...+.+..|.+||+||||++.+. .+.+..|+..|++.. .++.+
T Consensus 84 -~l~~~~~---g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~-------------~~~~v 146 (261)
T TIGR02881 84 -DLVGEYI---GHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNR-------------NEFVL 146 (261)
T ss_pred -Hhhhhhc---cchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhccC-------------CCEEE
Confidence 0100000 1111 11344556789999999999975 335567888887642 34566
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
++++++.. ...-..+.++|.+||+..+.+.++..++....+. + ++
T Consensus 147 ila~~~~~-------~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~-~---------------------------~~ 191 (261)
T TIGR02881 147 ILAGYSDE-------MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAE-R---------------------------MV 191 (261)
T ss_pred EecCCcch-------hHHHHhcChHHHhccceEEEECCCCHHHHHHHHH-H---------------------------HH
Confidence 66665531 0011246689999998877775544333322221 1 11
Q ss_pred HHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhcc
Q 006051 536 YFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLM 591 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~ 591 (663)
+ .....+++++...|..++...+.. ....+++.|.+.+++..|..+...+
T Consensus 192 ---~-~~~~~l~~~a~~~l~~~~~~~~~~--~~~~~gn~R~~~n~~e~a~~~~~~r 241 (261)
T TIGR02881 192 ---K-EREYKLTEEAKWKLREHLYKVDQL--SSREFSNARYVRNIIEKAIRRQAVR 241 (261)
T ss_pred ---H-HcCCccCHHHHHHHHHHHHHHHhc--cCCCCchHHHHHHHHHHHHHHHHHH
Confidence 1 123358888888888777655431 1134678999999999887776433
No 58
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.55 E-value=3.9e-14 Score=164.01 Aligned_cols=218 Identities=20% Similarity=0.232 Sum_probs=138.4
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceE
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTV 389 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~ 389 (663)
+.+++|.....+.+.-.+..- ...+.||||+|++|||||.+|++++..+. .+++...+.....++..
T Consensus 375 ~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~ 444 (686)
T PRK15429 375 FGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLE 444 (686)
T ss_pred ccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhh
Confidence 346888876555554333210 12247999999999999999999999765 46766665544333222
Q ss_pred EEeecC------chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-
Q 006051 390 TAVKDG------GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK- 462 (663)
Q Consensus 390 ~~~~~~------~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~- 462 (663)
..+++. |......|.+..|++|++||||++.++.+.|..|+++++++.+ .+.|.....+.++++|++||..
T Consensus 445 ~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~--~~~g~~~~~~~~~RiI~~t~~~l 522 (686)
T PRK15429 445 SDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEF--ERLGSNKIIQTDVRLIAATNRDL 522 (686)
T ss_pred hhhcCcccccccccccchhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCE--EeCCCCCcccceEEEEEeCCCCH
Confidence 222221 1122346778889999999999999999999999999999875 3445555567889999999974
Q ss_pred ------CCCCCCCccccccC--CChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHH
Q 006051 463 ------GHYDPNLSLSVNTT--LSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRY 534 (663)
Q Consensus 463 ------g~~d~~~~~~~~~~--l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~ 534 (663)
|.|..+..+..+.. --|||.+|-+.+..+ ++|+ +.++
T Consensus 523 ~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L------------~~~~-----------------------l~~~ 567 (686)
T PRK15429 523 KKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLL------------VKAF-----------------------TFKI 567 (686)
T ss_pred HHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHH------------HHHH-----------------------HHHH
Confidence 33433222211100 013333333322221 2222 2222
Q ss_pred HHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHh
Q 006051 535 IYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHAR 589 (663)
Q Consensus 535 i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~ 589 (663)
..... .-.+.++++|.+.|..| +||+|+|+|+++++.+-..+.
T Consensus 568 ~~~~~-~~~~~~s~~al~~L~~y-----------~WPGNvrEL~~~i~~a~~~~~ 610 (686)
T PRK15429 568 ARRMG-RNIDSIPAETLRTLSNM-----------EWPGNVRELENVIERAVLLTR 610 (686)
T ss_pred HHHcC-CCCCCcCHHHHHHHHhC-----------CCCCcHHHHHHHHHHHHHhCC
Confidence 11111 11246999999999999 899999999999997766544
No 59
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.53 E-value=1.3e-14 Score=157.32 Aligned_cols=198 Identities=20% Similarity=0.285 Sum_probs=143.1
Q ss_pred cccccccccCCCchHHHHHHHHHHhcC--CceEEeCCCcccCCceEEEeecC--chhH-----hhhhhhhhccCCeeecc
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSN--RSVITTGLGSTSAGLTVTAVKDG--GEWM-----LEAGALVLADGGLCCID 416 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~--~~~~~~~~~~~~~gl~~~~~~~~--~~~~-----~~~g~l~~a~~gvl~iD 416 (663)
.+.++|+.|+|||||..++|++++.+. .+++...++.....+..+.+++. |.+. ...|.+..|++|.+|+|
T Consensus 335 ~~~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFld 414 (606)
T COG3284 335 TDLPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLD 414 (606)
T ss_pred cCCCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHH
Confidence 358999999999999999999998765 34555555444333333333322 1111 22567788999999999
Q ss_pred cccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCccccccC-C-Chhhhhhhhh
Q 006051 417 EFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNTT-L-SGPLLSRFDI 487 (663)
Q Consensus 417 Eid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~~-l-~~aLl~RFdl 487 (663)
||..|+-+.|..|++++++|.| ..-|... .+.++.||+||+.. |+|.++.+|+.|.. + -|||..|=|.
T Consensus 415 eIgd~p~~~Qs~LLrVl~e~~v--~p~g~~~-~~vdirvi~ath~dl~~lv~~g~fredLyyrL~~~~i~lP~lr~R~d~ 491 (606)
T COG3284 415 EIGDMPLALQSRLLRVLQEGVV--TPLGGTR-IKVDIRVIAATHRDLAQLVEQGRFREDLYYRLNAFVITLPPLRERSDR 491 (606)
T ss_pred HhhhchHHHHHHHHHHHhhCce--eccCCcc-eeEEEEEEeccCcCHHHHHHcCCchHHHHHHhcCeeeccCchhccccc
Confidence 9999999999999999999997 4556666 78999999999983 89998888888742 2 1667777776
Q ss_pred hhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccC
Q 006051 488 VLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQ 567 (663)
Q Consensus 488 i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~ 567 (663)
+..+ .+++..+. ...-.+++++.+.|..|
T Consensus 492 ~~~l-------------~~~~~~~~----------------------------~~~~~l~~~~~~~l~~~---------- 520 (606)
T COG3284 492 IPLL-------------DRILKREN----------------------------DWRLQLDDDALARLLAY---------- 520 (606)
T ss_pred HHHH-------------HHHHHHcc----------------------------CCCccCCHHHHHHHHhC----------
Confidence 6544 22332221 11346899999999988
Q ss_pred CCccccHhHHHHHHHHHHHHHhccCCCccChhhH
Q 006051 568 NAARTTVRMLESLIRLAQAHARLMFRNEVTRLDA 601 (663)
Q Consensus 568 ~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv 601 (663)
.||+|+|+|.++++.+.+.+. ...|...|.
T Consensus 521 -~WPGNirel~~v~~~~~~l~~---~g~~~~~dl 550 (606)
T COG3284 521 -RWPGNIRELDNVIERLAALSD---GGRIRVSDL 550 (606)
T ss_pred -CCCCcHHHHHHHHHHHHHcCC---CCeeEcccC
Confidence 899999999999998766654 334444443
No 60
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=7.5e-14 Score=150.93 Aligned_cols=160 Identities=18% Similarity=0.202 Sum_probs=104.4
Q ss_pred ccccCchhHHHHHHHHHHhCCceeec-CCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~ 391 (663)
..+|.|++.+|+.+.-+...+..... ..+..+.++..|||+||||||||++||++|..+...|+...... |...+
T Consensus 433 W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpE----L~sk~ 508 (693)
T KOG0730|consen 433 WDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPE----LFSKY 508 (693)
T ss_pred hhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHH----HHHHh
Confidence 44678899999998877776554421 23344677789999999999999999999999998887642211 11111
Q ss_pred eecCchhHhhh--hhhhhccCCeeecccccccChhh-----------HHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 392 VKDGGEWMLEA--GALVLADGGLCCIDEFDSMREHD-----------RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 392 ~~~~~~~~~~~--g~l~~a~~gvl~iDEid~l~~~~-----------~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
+-+ ++..+.. ...-.+...|+|+||||.+.... .+.|+.-|+-.. . ..++.||||
T Consensus 509 vGe-SEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~--~k~V~ViAA 576 (693)
T KOG0730|consen 509 VGE-SERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------A--LKNVLVIAA 576 (693)
T ss_pred cCc-hHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------c--cCcEEEEec
Confidence 111 1111110 00112356999999999985432 344555554221 1 246799999
Q ss_pred eCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHH
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDA 501 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~ 501 (663)
||++.. |.+||++ |||.++++ +.|+.+.+.
T Consensus 577 TNRpd~------------ID~ALlRPGRlD~iiyV-plPD~~aR~ 608 (693)
T KOG0730|consen 577 TNRPDM------------IDPALLRPGRLDRIIYV-PLPDLEARL 608 (693)
T ss_pred cCChhh------------cCHHHcCCcccceeEee-cCccHHHHH
Confidence 999854 4459999 99999998 556555444
No 61
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.52 E-value=3.4e-14 Score=151.63 Aligned_cols=247 Identities=20% Similarity=0.205 Sum_probs=142.4
Q ss_pred HhhccccccCchhHHHHHHHHHHhC---Ccee--ecCC-CCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCC
Q 006051 308 ILRGICPQVFGLFTVKLAVALTLIG---GVQH--VDAS-GTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG 381 (663)
Q Consensus 308 l~~si~p~i~G~~~~K~aill~l~~---g~~~--~~~~-~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~ 381 (663)
|.+.+...|+||+.+|+++..++.. +... .... ..-..+..|+||+||||||||++|+++|+..+.++......
T Consensus 71 i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~ 150 (413)
T TIGR00382 71 IKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADAT 150 (413)
T ss_pred HHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechh
Confidence 4444555689999999999988742 1111 0000 00112346999999999999999999999888777654432
Q ss_pred c-ccCCceEEEeecC--chhHhhhhhhhhccCCeeecccccccCh--------------hhHHhHHHHHHhceee-eecc
Q 006051 382 S-TSAGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMRE--------------HDRATIHEAMEQQTIS-VAKA 443 (663)
Q Consensus 382 ~-~~~gl~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~--------------~~~~~L~~~me~~~i~-i~k~ 443 (663)
. +..|+........ .......+.+..+.+||+||||+|++++ ..|+.|+++|| |.+. +...
T Consensus 151 ~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~ 229 (413)
T TIGR00382 151 TLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQ 229 (413)
T ss_pred hccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhh-ccceecccC
Confidence 2 1112111100000 0001123455677899999999999976 58899999996 5543 3333
Q ss_pred CceeecCCcEEEEEeeCC----CCCCCCC-------------------C--c-----cc--------cccCCChhhhhhh
Q 006051 444 GLVTTLSTRTIIFGATNP----KGHYDPN-------------------L--S-----LS--------VNTTLSGPLLSRF 485 (663)
Q Consensus 444 g~~~~~~~~~~iiaatN~----~g~~d~~-------------------~--~-----~~--------~~~~l~~aLl~RF 485 (663)
|....-..++.+|.|+|. .|.|+-. . . .. .+..+.|+|+.|+
T Consensus 230 ~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRl 309 (413)
T TIGR00382 230 GGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRL 309 (413)
T ss_pred CCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCC
Confidence 332222357788999998 2444210 0 0 00 0113668888888
Q ss_pred hhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHH-HHHccCCCccCHHHHHHHHHHHHHHHhc
Q 006051 486 DIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIY-FVKGYFKPILTKEAEKVISSYYQLQRRS 564 (663)
Q Consensus 486 dli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~r~~~~p~ls~ea~~~l~~~y~~~r~~ 564 (663)
|.++.+.....++..+++.... ...+++|-. +..+.+.-.++++|.+.|.+.-.
T Consensus 310 d~Iv~f~pL~~~~L~~Il~~~~--------------------n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~----- 364 (413)
T TIGR00382 310 PVIATLEKLDEEALIAILTKPK--------------------NALVKQYQALFKMDNVELDFEEEALKAIAKKAL----- 364 (413)
T ss_pred CeEeecCCCCHHHHHHHHHHHH--------------------HHHHHHHHHHhccCCeEEEECHHHHHHHHHhCC-----
Confidence 8887775555555444433211 012333332 22234566789999888776411
Q ss_pred ccCCCccccHhHHHHHHHHH
Q 006051 565 ATQNAARTTVRMLESLIRLA 584 (663)
Q Consensus 565 ~~~~~~~~t~R~Le~lirla 584 (663)
....-.|.|.++++-.
T Consensus 365 ----~~~~GAR~Lr~iie~~ 380 (413)
T TIGR00382 365 ----ERKTGARGLRSIVEGL 380 (413)
T ss_pred ----CCCCCchHHHHHHHHh
Confidence 1123367777777643
No 62
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.51 E-value=3.2e-14 Score=157.19 Aligned_cols=203 Identities=21% Similarity=0.295 Sum_probs=133.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
+.++++.|++||||+.+|++++..++ .+++...+......+..+.+++. |......|.+..|++|++||||
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 241 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDE 241 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCccCCCCceeECCCCEEEEec
Confidence 37899999999999999999999875 36666655543222211122221 1112346778889999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCccccccCCChhhhhhhhhh-h
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNTTLSGPLLSRFDIV-L 489 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~~l~~aLl~RFdli-~ 489 (663)
++.|+...|..|+++++++.+ .+.|.....+.++++|+|||.. |.|.+ .|+.|+... +
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~--~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~------------~L~~~l~~~~i 307 (445)
T TIGR02915 242 IGDLPLNLQAKLLRFLQERVI--ERLGGREEIPVDVRIVCATNQDLKRMIAEGTFRE------------DLFYRIAEISI 307 (445)
T ss_pred hhhCCHHHHHHHHHHHhhCeE--EeCCCCceeeeceEEEEecCCCHHHHHHcCCccH------------HHHHHhcccee
Confidence 999999999999999999875 4445555677899999999974 34443 455554322 2
Q ss_pred hhcCCCChhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCC
Q 006051 490 VLLDTKNPEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQN 568 (663)
Q Consensus 490 ~l~d~~~~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~ 568 (663)
.++.......|- .++.|+ +++|.... ..-.+.++++|.+.|..|
T Consensus 308 ~lPpLr~R~~Di~~l~~~~-----------------------l~~~~~~~-~~~~~~~~~~a~~~L~~~----------- 352 (445)
T TIGR02915 308 TIPPLRSRDGDAVLLANAF-----------------------LERFAREL-KRKTKGFTDDALRALEAH----------- 352 (445)
T ss_pred cCCCchhchhhHHHHHHHH-----------------------HHHHHHHh-CCCCCCCCHHHHHHHHhC-----------
Confidence 221111111010 122222 22221111 112357999999999999
Q ss_pred CccccHhHHHHHHHHHHHHHhccCCCccChhhH
Q 006051 569 AARTTVRMLESLIRLAQAHARLMFRNEVTRLDA 601 (663)
Q Consensus 569 ~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv 601 (663)
+||+|+|+|+++++.+...+. ...++.+|+
T Consensus 353 ~wpgNvreL~~~i~~a~~~~~---~~~i~~~~l 382 (445)
T TIGR02915 353 AWPGNVRELENKVKRAVIMAE---GNQITAEDL 382 (445)
T ss_pred CCCChHHHHHHHHHHHHHhCC---CCcccHHHc
Confidence 899999999999997765554 456776665
No 63
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.51 E-value=8.1e-15 Score=138.67 Aligned_cols=114 Identities=20% Similarity=0.303 Sum_probs=83.6
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
+.||||+|++||||+.+|+++++.+++ +++...+...........+++. +......|.+..|++|++||||
T Consensus 22 ~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~ 101 (168)
T PF00158_consen 22 DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGHEKGAFTGARSDKKGLLEQANGGTLFLDE 101 (168)
T ss_dssp TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEBCSSSSTTTSSEBEHHHHHTTTSEEEEET
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhccccccccccccccCCceeeccceEEeecc
Confidence 489999999999999999999998764 7888777654322211112221 1222357999999999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
|+.|+++.|..|+++|+++.+ .+.|.....+.++++|+|||..
T Consensus 102 I~~L~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~RiI~st~~~ 144 (168)
T PF00158_consen 102 IEDLPPELQAKLLRVLEEGKF--TRLGSDKPVPVDVRIIASTSKD 144 (168)
T ss_dssp GGGS-HHHHHHHHHHHHHSEE--ECCTSSSEEE--EEEEEEESS-
T ss_pred hhhhHHHHHHHHHHHHhhchh--ccccccccccccceEEeecCcC
Confidence 999999999999999999987 4445556678899999999974
No 64
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=6.6e-14 Score=142.26 Aligned_cols=202 Identities=28% Similarity=0.331 Sum_probs=134.2
Q ss_pred ccccCchhHHHHHHHHHHhCCceee--cCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHV--DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~--~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
+-+|.|.+.+|.++.-...-..+.. -..|.-.+++.+|||+||||||||++|+++|+.++..+...+.++ ++
T Consensus 91 f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~----lt-- 164 (386)
T KOG0737|consen 91 FDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSN----LT-- 164 (386)
T ss_pred hhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccc----cc--
Confidence 4468899988877765544333221 114555788899999999999999999999999998887654432 22
Q ss_pred EeecCchhHhhhhhhhhc--------cCCeeecccccccChhhHHhHHHHHHh--ceeeeeccCceeecCCcEEEEEeeC
Q 006051 391 AVKDGGEWMLEAGALVLA--------DGGLCCIDEFDSMREHDRATIHEAMEQ--QTISVAKAGLVTTLSTRTIIFGATN 460 (663)
Q Consensus 391 ~~~~~~~~~~~~g~l~~a--------~~gvl~iDEid~l~~~~~~~L~~~me~--~~i~i~k~g~~~~~~~~~~iiaatN 460 (663)
+.|+.++-.++.| .+.|+||||+|.+-...+..=||+|.. ..+-..-+|..+.-..++.|+||||
T Consensus 165 -----~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATN 239 (386)
T KOG0737|consen 165 -----SKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATN 239 (386)
T ss_pred -----hhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCC
Confidence 2566555555433 578999999999754445566666532 1121234666666677899999999
Q ss_pred CCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCC---CCCCCCCCCHHHHHHHHHH
Q 006051 461 PKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKD---TEPLTDIWPLAMLRRYIYF 537 (663)
Q Consensus 461 ~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~ 537 (663)
++. .+..|+++|+.-.|.+ ..|+.+.+..|.+-+++.-.-+..-+ .......++..+|+..+..
T Consensus 240 RP~------------DlDeAiiRR~p~rf~V-~lP~~~qR~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLkelC~~ 306 (386)
T KOG0737|consen 240 RPF------------DLDEAIIRRLPRRFHV-GLPDAEQRRKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLKELCRL 306 (386)
T ss_pred CCc------------cHHHHHHHhCcceeee-CCCchhhHHHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHHHHHHH
Confidence 984 4445999999999988 55666666666666665433211111 1233456777788877655
Q ss_pred H
Q 006051 538 V 538 (663)
Q Consensus 538 ~ 538 (663)
|
T Consensus 307 A 307 (386)
T KOG0737|consen 307 A 307 (386)
T ss_pred H
Confidence 4
No 65
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.50 E-value=1e-13 Score=151.75 Aligned_cols=221 Identities=20% Similarity=0.143 Sum_probs=130.5
Q ss_pred ccccCchhHHHHHHHHHH--hCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 313 CPQVFGLFTVKLAVALTL--IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l--~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
..+|.|++.+|..+.... +. ..... ..++.+.+|||+||||||||++|+++|+..+.+++....+...++..
T Consensus 227 ~~dvgGl~~lK~~l~~~~~~~~--~~~~~--~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v-- 300 (489)
T CHL00195 227 ISDIGGLDNLKDWLKKRSTSFS--KQASN--YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV-- 300 (489)
T ss_pred HHHhcCHHHHHHHHHHHHHHhh--HHHHh--cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc--
Confidence 457899999998765321 11 00011 12345578999999999999999999999999888765433221111
Q ss_pred EeecCchhHhhhhhh---hhccCCeeecccccccChh------------hHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 391 AVKDGGEWMLEAGAL---VLADGGLCCIDEFDSMREH------------DRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 391 ~~~~~~~~~~~~g~l---~~a~~gvl~iDEid~l~~~------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
+.++..+. ..+ ....++|+||||||++... ....++.+|++. ...+.|
T Consensus 301 ---Gese~~l~-~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~-------------~~~V~v 363 (489)
T CHL00195 301 ---GESESRMR-QMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK-------------KSPVFV 363 (489)
T ss_pred ---ChHHHHHH-HHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC-------------CCceEE
Confidence 11111110 111 1236799999999986321 122344555431 345689
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRR 533 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (663)
|||||... .+++++++ |||.++.+ +.|+.+.+..|.+..+...... .+....+
T Consensus 364 IaTTN~~~------------~Ld~allR~GRFD~~i~v-~lP~~~eR~~Il~~~l~~~~~~----------~~~~~dl-- 418 (489)
T CHL00195 364 VATANNID------------LLPLEILRKGRFDEIFFL-DLPSLEEREKIFKIHLQKFRPK----------SWKKYDI-- 418 (489)
T ss_pred EEecCChh------------hCCHHHhCCCcCCeEEEe-CCcCHHHHHHHHHHHHhhcCCC----------cccccCH--
Confidence 99999874 45568887 99999988 5555444444433333221100 0000011
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhh
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESS 611 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s 611 (663)
+.|.+. ....|-+.++.+++-|..+|-... ..++.+|+..|+.-+..+
T Consensus 419 ------------------~~La~~-----------T~GfSGAdI~~lv~eA~~~A~~~~-~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 419 ------------------KKLSKL-----------SNKFSGAEIEQSIIEAMYIAFYEK-REFTTDDILLALKQFIPL 466 (489)
T ss_pred ------------------HHHHhh-----------cCCCCHHHHHHHHHHHHHHHHHcC-CCcCHHHHHHHHHhcCCC
Confidence 111111 234567888888888777776554 468999999999777654
No 66
>PRK15115 response regulator GlrR; Provisional
Probab=99.50 E-value=7.8e-14 Score=154.13 Aligned_cols=204 Identities=19% Similarity=0.257 Sum_probs=133.8
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
+.++++.|++||||+.+|+++++.++ .+++...+......+....+++. |......|.+..|++|++||||
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 37899999999999999999999876 46666655433221111111111 2222346778889999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCccccc---cCCChhhhhhhhh
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVN---TTLSGPLLSRFDI 487 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~---~~l~~aLl~RFdl 487 (663)
++.|+.+.|..|+++++++.+ ...|.......++.+|+||+.. |.|+++..+..+ +.+ |||.+|-+.
T Consensus 237 i~~l~~~~q~~L~~~l~~~~~--~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~l-PpLr~R~eD 313 (444)
T PRK15115 237 IGDMPAPLQVKLLRVLQERKV--RPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRLNVVSLKI-PALAERTED 313 (444)
T ss_pred cccCCHHHHHHHHHHHhhCCE--EeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhhceeeecC-CChHhcccc
Confidence 999999999999999999876 3445555667789999999863 445443332222 111 334444432
Q ss_pred hhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccC
Q 006051 488 VLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQ 567 (663)
Q Consensus 488 i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~ 567 (663)
+..+ +.|++ +++..- .....+.++++|.+.|..|
T Consensus 314 i~~l------------~~~~l-----------------------~~~~~~-~~~~~~~~~~~a~~~L~~~---------- 347 (444)
T PRK15115 314 IPLL------------ANHLL-----------------------RQAAER-HKPFVRAFSTDAMKRLMTA---------- 347 (444)
T ss_pred HHHH------------HHHHH-----------------------HHHHHH-hCCCCCCcCHHHHHHHHhC----------
Confidence 2211 22222 221110 0112346999999999999
Q ss_pred CCccccHhHHHHHHHHHHHHHhccCCCccChhhHHH
Q 006051 568 NAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAIT 603 (663)
Q Consensus 568 ~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~ 603 (663)
+||+|+|+|+++++.+...+. ...++.+|+..
T Consensus 348 -~WpgNvreL~~~i~~~~~~~~---~~~i~~~~l~~ 379 (444)
T PRK15115 348 -SWPGNVRQLVNVIEQCVALTS---SPVISDALVEQ 379 (444)
T ss_pred -CCCChHHHHHHHHHHHHHhCC---CCccChhhhhh
Confidence 899999999999997765543 45677777653
No 67
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.49 E-value=6.7e-14 Score=155.71 Aligned_cols=213 Identities=21% Similarity=0.229 Sum_probs=138.7
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
+.++|+.|++||||+.+|++++..+++ +++...+...........+++. |......|.+..|++|++||||
T Consensus 161 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~ 240 (469)
T PRK10923 161 SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE 240 (469)
T ss_pred CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEec
Confidence 478999999999999999999998763 6666665443222211122221 1122346778889999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh-hhhhhcCCCC
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD-IVLVLLDTKN 496 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd-li~~l~d~~~ 496 (663)
++.|+...|..|+++++++.+. +.|.....+.++++|+||+..- ........+.+.|+.||. ..+.++....
T Consensus 241 i~~l~~~~q~~L~~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~l-----~~~~~~~~~~~~L~~~l~~~~i~~PpLre 313 (469)
T PRK10923 241 IGDMPLDVQTRLLRVLADGQFY--RVGGYAPVKVDVRIIAATHQNL-----EQRVQEGKFREDLFHRLNVIRVHLPPLRE 313 (469)
T ss_pred cccCCHHHHHHHHHHHhcCcEE--eCCCCCeEEeeEEEEEeCCCCH-----HHHHHcCCchHHHHHHhcceeecCCCccc
Confidence 9999999999999999998763 3444445567899999998740 001111234456777774 3333433222
Q ss_pred hhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHh
Q 006051 497 PEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVR 575 (663)
Q Consensus 497 ~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R 575 (663)
...|. .++.|++ +++.... ..-.+.++++|.+.|..| +||+|+|
T Consensus 314 R~~Di~~l~~~~l-----------------------~~~~~~~-~~~~~~~~~~a~~~L~~~-----------~wpgNv~ 358 (469)
T PRK10923 314 RREDIPRLARHFL-----------------------QVAAREL-GVEAKLLHPETEAALTRL-----------AWPGNVR 358 (469)
T ss_pred chhhHHHHHHHHH-----------------------HHHHHHc-CCCCCCcCHHHHHHHHhC-----------CCCChHH
Confidence 11111 1222322 2221110 111246999999999999 8999999
Q ss_pred HHHHHHHHHHHHHhccCCCccChhhHHHH
Q 006051 576 MLESLIRLAQAHARLMFRNEVTRLDAITA 604 (663)
Q Consensus 576 ~Le~lirla~a~A~l~~~~~V~~~Dv~~A 604 (663)
+|+++++.+-..+. ...++.+|+...
T Consensus 359 eL~~~i~~~~~~~~---~~~i~~~~l~~~ 384 (469)
T PRK10923 359 QLENTCRWLTVMAA---GQEVLIQDLPGE 384 (469)
T ss_pred HHHHHHHHHHHhCC---CCcccHHHCcHh
Confidence 99999987766555 557888887543
No 68
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.49 E-value=1.7e-13 Score=149.54 Aligned_cols=205 Identities=21% Similarity=0.286 Sum_probs=131.6
Q ss_pred ccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 311 GICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 311 si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
-+-.+-||++.+|+-|+-.|+-+..... ..| .-+||+||||+|||+|++.+|+.++|.++....|+.... +
T Consensus 320 iLd~dHYGLekVKeRIlEyLAV~~l~~~-----~kG-pILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDE---A 390 (782)
T COG0466 320 ILDKDHYGLEKVKERILEYLAVQKLTKK-----LKG-PILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDE---A 390 (782)
T ss_pred HhcccccCchhHHHHHHHHHHHHHHhcc-----CCC-cEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccH---H
Confidence 3566779999999999988876533322 223 568999999999999999999999999998776654321 2
Q ss_pred EeecCchhH--hhhhhhhhc------cCCeeecccccccChh----hHHhHHHHHHh-ceeeeeccCceeecC-CcEEEE
Q 006051 391 AVKDGGEWM--LEAGALVLA------DGGLCCIDEFDSMREH----DRATIHEAMEQ-QTISVAKAGLVTTLS-TRTIIF 456 (663)
Q Consensus 391 ~~~~~~~~~--~~~g~l~~a------~~gvl~iDEid~l~~~----~~~~L~~~me~-~~i~i~k~g~~~~~~-~~~~ii 456 (663)
.++++...+ .-||.+..+ .+-+++|||||+|+.+ -.++|+++++- |..+....-....+. .++.||
T Consensus 391 EIRGHRRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFi 470 (782)
T COG0466 391 EIRGHRRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFI 470 (782)
T ss_pred HhccccccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEE
Confidence 233331111 125665542 5679999999999754 34789999963 221111111111121 578999
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHH
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIY 536 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 536 (663)
||+|.. ..+|.||++|...|- +..+...+.-.+..+|++.......+-
T Consensus 471 aTANsl------------~tIP~PLlDRMEiI~-lsgYt~~EKl~IAk~~LiPk~~~~~gL------------------- 518 (782)
T COG0466 471 ATANSL------------DTIPAPLLDRMEVIR-LSGYTEDEKLEIAKRHLIPKQLKEHGL------------------- 518 (782)
T ss_pred eecCcc------------ccCChHHhcceeeee-ecCCChHHHHHHHHHhcchHHHHHcCC-------------------
Confidence 999975 258999999998654 445555555455455554322110000
Q ss_pred HHHccCCCccCHHHHHHHHHHHH
Q 006051 537 FVKGYFKPILTKEAEKVISSYYQ 559 (663)
Q Consensus 537 ~~r~~~~p~ls~ea~~~l~~~y~ 559 (663)
..-.-.++++|...|.+||.
T Consensus 519 ---~~~el~i~d~ai~~iI~~YT 538 (782)
T COG0466 519 ---KKGELTITDEAIKDIIRYYT 538 (782)
T ss_pred ---CccceeecHHHHHHHHHHHh
Confidence 00123578888888888875
No 69
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.48 E-value=2.2e-13 Score=146.73 Aligned_cols=231 Identities=19% Similarity=0.139 Sum_probs=131.5
Q ss_pred ccCchhHHHHHHHHHHhCCceee-cCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
+|.|.+..|+.+.-.+....... ......+.++.++||+||||||||++|+++++.+...++....... .... .
T Consensus 132 di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l----~~~~-~ 206 (389)
T PRK03992 132 DIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSEL----VQKF-I 206 (389)
T ss_pred HhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHH----hHhh-c
Confidence 56676665555544332211110 0011123456789999999999999999999988877766432211 1000 0
Q ss_pred cCchhHhhhhhhhh---ccCCeeecccccccC-----------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEee
Q 006051 394 DGGEWMLEAGALVL---ADGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (663)
Q Consensus 394 ~~~~~~~~~g~l~~---a~~gvl~iDEid~l~-----------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat 459 (663)
+.+.+.. ...+.. ..++|+||||+|.+. .+.+..+.+.+.+-. +.. -..++.||+||
T Consensus 207 g~~~~~i-~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld------~~~--~~~~v~VI~aT 277 (389)
T PRK03992 207 GEGARLV-RELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMD------GFD--PRGNVKIIAAT 277 (389)
T ss_pred cchHHHH-HHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcc------ccC--CCCCEEEEEec
Confidence 1111111 112222 246899999999973 223344555543211 100 12367899999
Q ss_pred CCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 006051 460 NPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYF 537 (663)
Q Consensus 460 N~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 537 (663)
|... .+++++++ |||..+.+.. |+.+....+.+..+....
T Consensus 278 n~~~------------~ld~allRpgRfd~~I~v~~-P~~~~R~~Il~~~~~~~~------------------------- 319 (389)
T PRK03992 278 NRID------------ILDPAILRPGRFDRIIEVPL-PDEEGRLEILKIHTRKMN------------------------- 319 (389)
T ss_pred CChh------------hCCHHHcCCccCceEEEECC-CCHHHHHHHHHHHhccCC-------------------------
Confidence 9863 34568886 9999888844 444333333222211110
Q ss_pred HHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhh
Q 006051 538 VKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTS 615 (663)
Q Consensus 538 ~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~ 615 (663)
+.+.+. ...|... ....+.+.++++++.|...|--+.+..|+.+|+..|+.-+..+....
T Consensus 320 ----~~~~~~---~~~la~~-----------t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 320 ----LADDVD---LEELAEL-----------TEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred ----CCCcCC---HHHHHHH-----------cCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhcccccc
Confidence 000011 0111111 12356788999999998888777888999999999999987766553
No 70
>PF14551 MCM_N: MCM N-terminal domain; PDB: 2VL6_C 3F9V_A 1LTL_E.
Probab=99.48 E-value=2.7e-14 Score=128.23 Aligned_cols=111 Identities=30% Similarity=0.443 Sum_probs=81.7
Q ss_pred HHHHHHHHHH-----hHHHHHHhhcCCCCCCceeEEEechhhcccCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhh--
Q 006051 11 KALAEFVIRH-----HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIVFDE-- 83 (663)
Q Consensus 11 ~~f~~Fl~~~-----~~~~i~~~~~~~~~~~~~~l~Vd~~~L~~~dp~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~-- 83 (663)
++|.+||.+| |.++|++++.. ...+|.|||+||.+|||+||..|+++|.+++++|++|+.+++......
T Consensus 3 ~~F~~Fl~~f~~~~~Y~~~l~~~~~~----~~~~l~Vd~~dL~~f~~~L~~~l~~~P~~~l~~~~~a~~~~~~~~~~~~~ 78 (121)
T PF14551_consen 3 RRFREFLREFKEEPKYMDQLREMIQR----NKKSLYVDLDDLREFDPDLAEALIENPYRYLPLFEEALKEVVKELFPSEQ 78 (121)
T ss_dssp HHHHHHCCCH-TS-CCHHHHHHHHHH----T-SCEEEEHHHHHHH-HHHHHHHHHCCCCCHHHHHHHHHHCHHTT-----
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHc----CCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 6799999986 89999999875 357999999999999999999999999999999999999876532110
Q ss_pred -hhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEee
Q 006051 84 -LKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKG 132 (663)
Q Consensus 84 -~~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G 132 (663)
............+++++. + .| ...++|+|++.++||||+|+|
T Consensus 79 ~~~~~~~~~~~~~~~v~~~--~----~~-~~~~iR~L~s~~igkLV~v~G 121 (121)
T PF14551_consen 79 QSSFPPELKRRKEIQVRFY--N----LP-KSTSIRELRSSHIGKLVSVSG 121 (121)
T ss_dssp -----GCCTTTS--EEEEE--S-----S--EE-GGG-SGGGTTSEEEEEE
T ss_pred ccCCchhhccceeEEEEEc--C----CC-CCcCcCCCChHHCCCEEEEeC
Confidence 000111223456888887 2 22 456899999999999999999
No 71
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=6.6e-13 Score=141.66 Aligned_cols=159 Identities=19% Similarity=0.261 Sum_probs=105.3
Q ss_pred cCchhHHHHHHHHHHhCCceeecC-CCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeec
Q 006051 316 VFGLFTVKLAVALTLIGGVQHVDA-SGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD 394 (663)
Q Consensus 316 i~G~~~~K~aill~l~~g~~~~~~-~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~ 394 (663)
|.|++.++..+..++...+++.+- ....++.+..|||+||||||||.||+++|+.++..|+...... |.
T Consensus 513 IGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPE----Ll------ 582 (802)
T KOG0733|consen 513 IGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPE----LL------ 582 (802)
T ss_pred cccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHH----HH------
Confidence 578999999999999887665332 2234566789999999999999999999999888777642110 11
Q ss_pred CchhHhhhh----h-hhh---ccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 395 GGEWMLEAG----A-LVL---ADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 395 ~~~~~~~~g----~-l~~---a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
+.|+.+.. . +.. +.++|+|+||+|.|-+. ..+.|+.-|+-. .. ...+.|
T Consensus 583 -NkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl---------~~--R~gV~v 650 (802)
T KOG0733|consen 583 -NKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGL---------EE--RRGVYV 650 (802)
T ss_pred -HHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhccc---------cc--ccceEE
Confidence 12222211 1 112 35799999999998432 334455555421 11 235689
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhh
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILA 509 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~ 509 (663)
|||||++.-.| ||+++ |||-+.++ +.|+.+.+..|.+.+.+
T Consensus 651 iaATNRPDiID------------pAiLRPGRlDk~LyV-~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 651 IAATNRPDIID------------PAILRPGRLDKLLYV-GLPNAEERVAILKTITK 693 (802)
T ss_pred EeecCCCcccc------------hhhcCCCccCceeee-cCCCHHHHHHHHHHHhc
Confidence 99999985444 58888 99998888 55665554444444443
No 72
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.46 E-value=5.1e-13 Score=153.39 Aligned_cols=224 Identities=13% Similarity=0.121 Sum_probs=139.2
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccC
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA 385 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~ 385 (663)
..+.+.+.-.|+||+.+++.+.-++..... .-....++..++||+||||||||.+|+.+|+....+++...+.....
T Consensus 450 ~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~---gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~ 526 (758)
T PRK11034 450 KNLGDRLKMLVFGQDKAIEALTEAIKMSRA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_pred HHHHHHhcceEeCcHHHHHHHHHHHHHHhc---cccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcc
Confidence 356677888999999988888776652100 00111233457999999999999999999999888877665543321
Q ss_pred CceEEEeecC--chh-Hhhhhhhh----hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 386 GLTVTAVKDG--GEW-MLEAGALV----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 386 gl~~~~~~~~--~~~-~~~~g~l~----~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
....+.+.+. |.. ....|.+. ....+|++||||++++++.++.|+++|++|.++.. .|.... -.++.+|+|
T Consensus 527 ~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~-~g~~vd-~rn~iiI~T 604 (758)
T PRK11034 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDN-NGRKAD-FRNVVLVMT 604 (758)
T ss_pred cccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecC-CCceec-CCCcEEEEe
Confidence 1111111111 100 01123332 33568999999999999999999999999998643 233222 246789999
Q ss_pred eCCCC------C--CCCCCc-----cccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCC
Q 006051 459 TNPKG------H--YDPNLS-----LSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDI 525 (663)
Q Consensus 459 tN~~g------~--~d~~~~-----~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 525 (663)
||... . |..... -.....+.|.|+.|+|.++.+.....++..+++.. .+.
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~-~l~---------------- 667 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDK-FIV---------------- 667 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHH-HHH----------------
Confidence 99531 0 110000 01123588999999999988866666565444432 221
Q ss_pred CCHHHHHHHHHHHHccCCCccCHHHHHHHHHH
Q 006051 526 WPLAMLRRYIYFVKGYFKPILTKEAEKVISSY 557 (663)
Q Consensus 526 ~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~ 557 (663)
.+.+-+ .++.+.-.+++++.++|...
T Consensus 668 ----~~~~~l--~~~~i~l~~~~~~~~~l~~~ 693 (758)
T PRK11034 668 ----ELQAQL--DQKGVSLEVSQEARDWLAEK 693 (758)
T ss_pred ----HHHHHH--HHCCCCceECHHHHHHHHHh
Confidence 111211 23456778899998887743
No 73
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.45 E-value=5.1e-13 Score=154.53 Aligned_cols=175 Identities=22% Similarity=0.342 Sum_probs=110.2
Q ss_pred ccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 311 GICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 311 si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
-+..+.||++.+|+.|+..+....... ..++ ..++|+||||+|||++++.+++..++.++....++.....
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~-----~~~g-~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~--- 389 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVN-----KIKG-PILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEA--- 389 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcc-----cCCC-ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHH---
Confidence 456679999999999985555321111 1223 4699999999999999999999999888766544332211
Q ss_pred EeecCc-hhH-hhhhhhh----h--ccCCeeecccccccChhh----HHhHHHHHHhce-eeeeccCceeec-CCcEEEE
Q 006051 391 AVKDGG-EWM-LEAGALV----L--ADGGLCCIDEFDSMREHD----RATIHEAMEQQT-ISVAKAGLVTTL-STRTIIF 456 (663)
Q Consensus 391 ~~~~~~-~~~-~~~g~l~----~--a~~gvl~iDEid~l~~~~----~~~L~~~me~~~-i~i~k~g~~~~~-~~~~~ii 456 (663)
.+.+.. .+. ..+|.+. . ..+.|++|||+|+++.+. .++|+++|+.++ .+....-....+ -.++.+|
T Consensus 390 ~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i 469 (784)
T PRK10787 390 EIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFV 469 (784)
T ss_pred HhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceEEE
Confidence 111110 000 0133332 1 245699999999998765 489999998543 222211111111 2577899
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
||+|.. .+++||++||++ +.+..+..++..+++..|+.
T Consensus 470 ~TaN~~-------------~i~~aLl~R~~i-i~~~~~t~eek~~Ia~~~L~ 507 (784)
T PRK10787 470 ATSNSM-------------NIPAPLLDRMEV-IRLSGYTEDEKLNIAKRHLL 507 (784)
T ss_pred EcCCCC-------------CCCHHHhcceee-eecCCCCHHHHHHHHHHhhh
Confidence 999863 588999999974 55656665555555555543
No 74
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.44 E-value=3.9e-13 Score=149.19 Aligned_cols=213 Identities=18% Similarity=0.210 Sum_probs=135.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeecccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDEF 418 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDEi 418 (663)
.++|+.|++||||+.+|++++..+. .+++..++......+....+++. |......|.+..|++|++||||+
T Consensus 167 ~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i 246 (457)
T PRK11361 167 ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEI 246 (457)
T ss_pred cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEech
Confidence 7899999999999999999998765 45666655543322211112211 22223467888899999999999
Q ss_pred cccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhh-hhcCCCCh
Q 006051 419 DSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVL-VLLDTKNP 497 (663)
Q Consensus 419 d~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~-~l~d~~~~ 497 (663)
+.++...|..|+++++++.+ .+.|.....+.++.+|+|||..- ..+.....+.+.|+.|+..+. .++.....
T Consensus 247 ~~l~~~~q~~L~~~l~~~~~--~~~~~~~~~~~~~rii~~t~~~l-----~~~~~~g~~~~~l~~~l~~~~i~~ppLreR 319 (457)
T PRK11361 247 GEMPLVLQAKLLRILQEREF--ERIGGHQTIKVDIRIIAATNRDL-----QAMVKEGTFREDLFYRLNVIHLILPPLRDR 319 (457)
T ss_pred hhCCHHHHHHHHHHHhcCcE--EeCCCCceeeeceEEEEeCCCCH-----HHHHHcCCchHHHHHHhccceecCCChhhc
Confidence 99999999999999999875 34455566778899999999740 000011123334555553321 12111111
Q ss_pred hHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhH
Q 006051 498 EWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRM 576 (663)
Q Consensus 498 ~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~ 576 (663)
..|. .++.+ ++.++-... ..-.+.++++|.+.|..| +||+|+|+
T Consensus 320 ~~di~~l~~~-----------------------~l~~~~~~~-~~~~~~~~~~a~~~L~~~-----------~wpgNv~e 364 (457)
T PRK11361 320 REDISLLANH-----------------------FLQKFSSEN-QRDIIDIDPMAMSLLTAW-----------SWPGNIRE 364 (457)
T ss_pred hhhHHHHHHH-----------------------HHHHHHHHc-CCCCCCcCHHHHHHHHcC-----------CCCCcHHH
Confidence 1110 11222 222321110 111357999999999999 89999999
Q ss_pred HHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 577 LESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 577 Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
|+++++.+...+. ...++.+|+...+
T Consensus 365 L~~~~~~~~~~~~---~~~i~~~~l~~~~ 390 (457)
T PRK11361 365 LSNVIERAVVMNS---GPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHHHHHHhCC---CCcccHHHChHhh
Confidence 9999987665544 4567888775433
No 75
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.44 E-value=1.6e-12 Score=147.35 Aligned_cols=155 Identities=19% Similarity=0.228 Sum_probs=99.4
Q ss_pred hccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC----------CceEEeC
Q 006051 310 RGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN----------RSVITTG 379 (663)
Q Consensus 310 ~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~----------~~~~~~~ 379 (663)
..-+++++|++...++++-.+..+ .+.+++|+||||||||++|+.+++... .+++...
T Consensus 150 p~~~~~iiGqs~~~~~l~~~ia~~------------~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~ 217 (615)
T TIGR02903 150 PRAFSEIVGQERAIKALLAKVASP------------FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVD 217 (615)
T ss_pred cCcHHhceeCcHHHHHHHHHHhcC------------CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEe
Confidence 345667899998888776666442 125799999999999999999987652 2344433
Q ss_pred CCcccC-------CceEEEeec------------CchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeee
Q 006051 380 LGSTSA-------GLTVTAVKD------------GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISV 440 (663)
Q Consensus 380 ~~~~~~-------gl~~~~~~~------------~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i 440 (663)
...... .+... ..+ .|......|.+..+++|++||||++.|+...|..|+.+|+++.+.+
T Consensus 218 ~~~l~~d~~~i~~~llg~-~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~ 296 (615)
T TIGR02903 218 GTTLRWDPREVTNPLLGS-VHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEF 296 (615)
T ss_pred chhccCCHHHHhHHhcCC-ccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEe
Confidence 221100 00000 000 0111123455667889999999999999999999999999988755
Q ss_pred eccCc---------------eeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhh
Q 006051 441 AKAGL---------------VTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIV 488 (663)
Q Consensus 441 ~k~g~---------------~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli 488 (663)
..+.. ....+.++.++++|+... ..++++|++||..+
T Consensus 297 ~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~-----------~~l~~aLrSR~~~i 348 (615)
T TIGR02903 297 SSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP-----------EEINPALRSRCAEV 348 (615)
T ss_pred ecceeccCCcccchhhhhhcccCccceEEEEEeccccc-----------cccCHHHHhceeEE
Confidence 42210 112345677777776430 13567999999754
No 76
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.43 E-value=1.4e-12 Score=139.82 Aligned_cols=227 Identities=18% Similarity=0.136 Sum_probs=130.0
Q ss_pred ccCchhHHHHHHHHHHhCCcee-ecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
+|.|++..|+.+.-.+...... .......+..+.++||+||||||||++++++++....+++....... .....
T Consensus 146 digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l----~~k~~- 220 (398)
T PTZ00454 146 DIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEF----VQKYL- 220 (398)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH----HHHhc-
Confidence 6778877666554433221111 01111224456789999999999999999999988877765422110 00000
Q ss_pred cCchhHhh-h-hhhhhccCCeeecccccccCh-----------hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeC
Q 006051 394 DGGEWMLE-A-GALVLADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN 460 (663)
Q Consensus 394 ~~~~~~~~-~-g~l~~a~~gvl~iDEid~l~~-----------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN 460 (663)
+.+...+. . .......++|+||||+|.+.. ..+..+.+.+.+-. |.. -..++.+|+|||
T Consensus 221 ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld------~~~--~~~~v~VI~aTN 292 (398)
T PTZ00454 221 GEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD------GFD--QTTNVKVIMATN 292 (398)
T ss_pred chhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh------ccC--CCCCEEEEEecC
Confidence 01111110 0 011123578999999998732 12233444443211 110 124678999999
Q ss_pred CCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 006051 461 PKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFV 538 (663)
Q Consensus 461 ~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 538 (663)
... .+++++++ |||..+.+ +.|+.+....+.+.++....
T Consensus 293 ~~d------------~LDpAllR~GRfd~~I~~-~~P~~~~R~~Il~~~~~~~~-------------------------- 333 (398)
T PTZ00454 293 RAD------------TLDPALLRPGRLDRKIEF-PLPDRRQKRLIFQTITSKMN-------------------------- 333 (398)
T ss_pred Cch------------hCCHHHcCCCcccEEEEe-CCcCHHHHHHHHHHHHhcCC--------------------------
Confidence 874 45568887 99999888 45555444444433332111
Q ss_pred HccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHh
Q 006051 539 KGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIES 610 (663)
Q Consensus 539 r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~ 610 (663)
+.+.+. . ..+... ....|.+.+.++++-|...|-.+.+..|+.+|+..|+..+..
T Consensus 334 ---l~~dvd--~-~~la~~-----------t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~ 388 (398)
T PTZ00454 334 ---LSEEVD--L-EDFVSR-----------PEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVR 388 (398)
T ss_pred ---CCcccC--H-HHHHHH-----------cCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHh
Confidence 011111 0 011100 234578899999999998888888899999999999987643
No 77
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.43 E-value=4.8e-13 Score=142.68 Aligned_cols=180 Identities=20% Similarity=0.188 Sum_probs=108.0
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
+.+|.|++..-..+.-.+..-..........++++..|||.||||||||+||+++|..++-+++.....+.-+|.....-
T Consensus 189 f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESE 268 (802)
T KOG0733|consen 189 FSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESE 268 (802)
T ss_pred hhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccH
Confidence 34566766443333322222111111223346788899999999999999999999999999998655444444432211
Q ss_pred ecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeee---eccC--ceeecCCcEEEEEeeCCCCCCCC
Q 006051 393 KDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISV---AKAG--LVTTLSTRTIIFGATNPKGHYDP 467 (663)
Q Consensus 393 ~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i---~k~g--~~~~~~~~~~iiaatN~~g~~d~ 467 (663)
+...+.+-++ ....++|+||||||.+.+.... -.+-||++.|.- .-++ ...+....+.||||||++..+|
T Consensus 269 kkiRelF~~A---~~~aPcivFiDeIDAI~pkRe~-aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD- 343 (802)
T KOG0733|consen 269 KKIRELFDQA---KSNAPCIVFIDEIDAITPKREE-AQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD- 343 (802)
T ss_pred HHHHHHHHHH---hccCCeEEEeecccccccchhh-HHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC-
Confidence 1111111111 2245799999999999875433 344455443311 0111 1122346789999999986555
Q ss_pred CCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhh
Q 006051 468 NLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILA 509 (663)
Q Consensus 468 ~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~ 509 (663)
++|++ |||--+-+ ..|++..+..|.+-+.+
T Consensus 344 -----------paLRRaGRFdrEI~l-~vP~e~aR~~IL~~~~~ 375 (802)
T KOG0733|consen 344 -----------PALRRAGRFDREICL-GVPSETAREEILRIICR 375 (802)
T ss_pred -----------HHHhccccccceeee-cCCchHHHHHHHHHHHh
Confidence 48887 99988877 55665555555544444
No 78
>PHA02244 ATPase-like protein
Probab=99.43 E-value=8.7e-13 Score=136.87 Aligned_cols=136 Identities=20% Similarity=0.245 Sum_probs=98.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhh--hccCCeeecccccccChhh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV--LADGGLCCIDEFDSMREHD 425 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~--~a~~gvl~iDEid~l~~~~ 425 (663)
.||||.||||||||++|+++++..+.+++..........+.. .....+.| ..|.+. .++||+|+|||++.++++.
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~--~dgpLl~A~~~GgvLiLDEId~a~p~v 196 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKF--HETPFYEAFKKGGLFFIDEIDASIPEA 196 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccc--cchHHHHHhhcCCEEEEeCcCcCCHHH
Confidence 799999999999999999999999988887642211111111 11112333 445554 3589999999999999999
Q ss_pred HHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCC-CCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 426 RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKG-HYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 426 ~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g-~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
+..|+.+++++.+. ..|.....+.++++|+|+|+.+ .|+. .+.....+++++++||- .+.+
T Consensus 197 q~~L~~lLd~r~l~--l~g~~i~~h~~FRlIATsN~~~~G~~~--~y~G~k~L~~AllDRFv-~I~~ 258 (383)
T PHA02244 197 LIIINSAIANKFFD--FADERVTAHEDFRVISAGNTLGKGADH--IYVARNKIDGATLDRFA-PIEF 258 (383)
T ss_pred HHHHHHHhccCeEE--ecCcEEecCCCEEEEEeeCCCccCccc--ccCCCcccCHHHHhhcE-EeeC
Confidence 99999999988664 3455666678999999999963 2322 22234578999999995 4545
No 79
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=8.9e-13 Score=127.10 Aligned_cols=223 Identities=23% Similarity=0.242 Sum_probs=128.5
Q ss_pred ccCchhH----HHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 315 QVFGLFT----VKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 315 ~i~G~~~----~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
+|.|.+. +.+||.+.+.. +.......++++..+|+|||||||||.+||++|......|+.... ..|..-
T Consensus 172 DiGGldkQIqELvEAiVLpmth---~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg----PQLVQM 244 (424)
T KOG0652|consen 172 DIGGLDKQIQELVEAIVLPMTH---KEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAG----PQLVQM 244 (424)
T ss_pred ccccHHHHHHHHHHHhcccccc---HHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcc----hHHHhh
Confidence 5566653 34455554432 222234567889999999999999999999999876655543210 011111
Q ss_pred EeecCchhHhhhhhhhhc---cCCeeecccccccC-----------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 391 AVKDGGEWMLEAGALVLA---DGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 391 ~~~~~~~~~~~~g~l~~a---~~gvl~iDEid~l~-----------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
.+-+ |. .+...++.+| .+.|+||||+|.+. .+.|..+++.+.|-. |. .-+.++-||
T Consensus 245 fIGd-GA-kLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLD------GF--ss~~~vKvi 314 (424)
T KOG0652|consen 245 FIGD-GA-KLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLD------GF--SSDDRVKVI 314 (424)
T ss_pred hhcc-hH-HHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhc------CC--CCccceEEE
Confidence 1111 21 1223334444 46899999999873 345677888887632 21 235678999
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHH
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRY 534 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~ 534 (663)
||||+..-+| |+|++ |.|..+.++- |+++.+ .+|++.|...... .+.+..+.|
T Consensus 315 AATNRvDiLD------------PALlRSGRLDRKIEfP~-Pne~aR----arIlQIHsRKMnv-----~~DvNfeEL--- 369 (424)
T KOG0652|consen 315 AATNRVDILD------------PALLRSGRLDRKIEFPH-PNEEAR----ARILQIHSRKMNV-----SDDVNFEEL--- 369 (424)
T ss_pred eecccccccC------------HHHhhcccccccccCCC-CChHHH----HHHHHHhhhhcCC-----CCCCCHHHH---
Confidence 9999975555 47877 8998888744 443332 2334444321111 011111111
Q ss_pred HHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHh
Q 006051 535 IYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIES 610 (663)
Q Consensus 535 i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~ 610 (663)
+| . .-.++-.|+.++.--|-..|--+...+|+-+|..++|.-+..
T Consensus 370 ---aR-----------------------s-----TddFNGAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqa 414 (424)
T KOG0652|consen 370 ---AR-----------------------S-----TDDFNGAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQA 414 (424)
T ss_pred ---hh-----------------------c-----ccccCchhheeeehhhhHHHHhcccccccHHHHHHHHHHHHH
Confidence 11 1 011223345555555566677777889999999988866543
No 80
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.42 E-value=1.2e-12 Score=153.02 Aligned_cols=178 Identities=22% Similarity=0.260 Sum_probs=107.5
Q ss_pred HhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccC--
Q 006051 308 ILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA-- 385 (663)
Q Consensus 308 l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~-- 385 (663)
+-+.+..+++|++.+|+.+.-.+....... ..++ .++||+||||||||++|+++++.+..+++....+....
T Consensus 314 ~~~~l~~~~~G~~~~k~~i~~~~~~~~~~~-----~~~~-~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~ 387 (775)
T TIGR00763 314 AKEILDEDHYGLKKVKERILEYLAVQKLRG-----KMKG-PILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEA 387 (775)
T ss_pred HHHHhhhhcCChHHHHHHHHHHHHHHHhhc-----CCCC-ceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHH
Confidence 455677889999999999887554321110 1122 47999999999999999999999988887765432211
Q ss_pred CceE---EEeecCchhHhhhhhhhh--ccCCeeecccccccChhh----HHhHHHHHHhc---eeeeeccCceeecCCcE
Q 006051 386 GLTV---TAVKDGGEWMLEAGALVL--ADGGLCCIDEFDSMREHD----RATIHEAMEQQ---TISVAKAGLVTTLSTRT 453 (663)
Q Consensus 386 gl~~---~~~~~~~~~~~~~g~l~~--a~~gvl~iDEid~l~~~~----~~~L~~~me~~---~i~i~k~g~~~~~~~~~ 453 (663)
.+.. ........... ..+.. ..+.|++|||||++.++. .++|++.|+.. .+.-...+.... -.++
T Consensus 388 ~i~g~~~~~~g~~~g~i~--~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d-~s~v 464 (775)
T TIGR00763 388 EIRGHRRTYVGAMPGRII--QGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFD-LSKV 464 (775)
T ss_pred HHcCCCCceeCCCCchHH--HHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceec-cCCE
Confidence 0000 00000000111 11222 245699999999997643 37899998752 221111111111 1467
Q ss_pred EEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHH
Q 006051 454 IIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHI 507 (663)
Q Consensus 454 ~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~i 507 (663)
.+|+|||... .++++|++||+. +.+..+..++...++..++
T Consensus 465 ~~I~TtN~~~------------~i~~~L~~R~~v-i~~~~~~~~e~~~I~~~~l 505 (775)
T TIGR00763 465 IFIATANSID------------TIPRPLLDRMEV-IELSGYTEEEKLEIAKKYL 505 (775)
T ss_pred EEEEecCCch------------hCCHHHhCCeeE-EecCCCCHHHHHHHHHHHH
Confidence 8899999862 567899999974 5665555445544444444
No 81
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.42 E-value=8.8e-13 Score=146.57 Aligned_cols=214 Identities=21% Similarity=0.239 Sum_probs=138.0
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
..++++.|++||||+++|+++++.+++ +++...+......+..+.+++. +......|.+..|++|++||||
T Consensus 157 ~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~e 236 (463)
T TIGR01818 157 DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGHEKGAFTGANTRRQGRFEQADGGTLFLDE 236 (463)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEc
Confidence 378999999999999999999998653 6666665543222211112111 1111235667789999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh-hhhhcCCCC
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI-VLVLLDTKN 496 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl-i~~l~d~~~ 496 (663)
++.++.+.|..|+++++++.+. +.|.....+.++.+|+|+|..-. .......+.+.|+.|+.. .+.++...+
T Consensus 237 i~~l~~~~q~~ll~~l~~~~~~--~~~~~~~~~~~~rii~~~~~~l~-----~~~~~~~f~~~L~~rl~~~~i~lPpLr~ 309 (463)
T TIGR01818 237 IGDMPLDAQTRLLRVLADGEFY--RVGGRTPIKVDVRIVAATHQNLE-----ALVRQGKFREDLFHRLNVIRIHLPPLRE 309 (463)
T ss_pred hhhCCHHHHHHHHHHHhcCcEE--ECCCCceeeeeeEEEEeCCCCHH-----HHHHcCCcHHHHHHHhCcceecCCCccc
Confidence 9999999999999999998863 34544556678899999997400 001112233467777653 333433222
Q ss_pred hhHHH-HHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHh
Q 006051 497 PEWDA-VVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVR 575 (663)
Q Consensus 497 ~~~d~-~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R 575 (663)
...|- .++.|++ +++.... ..-.+.++++|.+.|..| +||+|+|
T Consensus 310 R~~Di~~l~~~~l-----------------------~~~~~~~-~~~~~~~~~~a~~~L~~~-----------~wpgNvr 354 (463)
T TIGR01818 310 RREDIPRLARHFL-----------------------ALAAREL-DVEPKLLDPEALERLKQL-----------RWPGNVR 354 (463)
T ss_pred chhhHHHHHHHHH-----------------------HHHHHHh-CCCCCCcCHHHHHHHHhC-----------CCCChHH
Confidence 11111 1222222 2221100 111247999999999999 8999999
Q ss_pred HHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 576 MLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 576 ~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
+|+++++.+-..|. ...++.+|+...+
T Consensus 355 eL~~~~~~~~~~~~---~~~i~~~~l~~~~ 381 (463)
T TIGR01818 355 QLENLCRWLTVMAS---GDEVLVSDLPAEL 381 (463)
T ss_pred HHHHHHHHHHHhCC---CCcccHHhchHHH
Confidence 99999997766554 5678888876544
No 82
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=3e-12 Score=140.25 Aligned_cols=219 Identities=16% Similarity=0.163 Sum_probs=126.4
Q ss_pred HHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc
Q 006051 292 QFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+|+++++..+ .+|+||+.++..+..++..| +-+..+||+||||||||++|+++++..
T Consensus 3 ~l~~kyRP~~~-----------~divGq~~i~~~L~~~i~~~-----------~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 3 ALYRKYRPKTF-----------SEVVGQDHVKKLIINALKKN-----------SISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred hhHHHHCCCCH-----------HHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45666655544 37899999988888877664 122458999999999999999999875
Q ss_pred CCceEE----eC---------CCcccCCceEEEeecCch-hHhh----hhhh-hhccCCeeecccccccChhhHHhHHHH
Q 006051 372 NRSVIT----TG---------LGSTSAGLTVTAVKDGGE-WMLE----AGAL-VLADGGLCCIDEFDSMREHDRATIHEA 432 (663)
Q Consensus 372 ~~~~~~----~~---------~~~~~~gl~~~~~~~~~~-~~~~----~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~ 432 (663)
...-.. ++ .+....-+........|. ...+ .... ..++..|++|||++.+..+.++.|+..
T Consensus 61 ~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~ 140 (472)
T PRK14962 61 NCENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKT 140 (472)
T ss_pred ccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHH
Confidence 431100 00 000000011111001110 0000 1100 224567999999999999999999999
Q ss_pred HHhceeeeeccCceeecCCcEEEEEee-CCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhc
Q 006051 433 MEQQTISVAKAGLVTTLSTRTIIFGAT-NPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEG 511 (663)
Q Consensus 433 me~~~i~i~k~g~~~~~~~~~~iiaat-N~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~ 511 (663)
|++. +..+.+|++| |+. .+.+++.+||. ++.+....
T Consensus 141 LE~p-------------~~~vv~Ilattn~~-------------kl~~~L~SR~~-vv~f~~l~---------------- 177 (472)
T PRK14962 141 LEEP-------------PSHVVFVLATTNLE-------------KVPPTIISRCQ-VIEFRNIS---------------- 177 (472)
T ss_pred HHhC-------------CCcEEEEEEeCChH-------------hhhHHHhcCcE-EEEECCcc----------------
Confidence 9862 2234555554 442 45678999995 34442322
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhcc
Q 006051 512 GLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLM 591 (663)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~ 591 (663)
.+.+..++..+-..-...++++|.+.|..+. .+++|.+.+++..+.+.+
T Consensus 178 ----------------~~el~~~L~~i~~~egi~i~~eal~~Ia~~s------------~GdlR~aln~Le~l~~~~--- 226 (472)
T PRK14962 178 ----------------DELIIKRLQEVAEAEGIEIDREALSFIAKRA------------SGGLRDALTMLEQVWKFS--- 226 (472)
T ss_pred ----------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh------------CCCHHHHHHHHHHHHHhc---
Confidence 2333333332222223467888888877652 234666666655433322
Q ss_pred CCCccChhhHHHHHHH
Q 006051 592 FRNEVTRLDAITAILC 607 (663)
Q Consensus 592 ~~~~V~~~Dv~~Ai~l 607 (663)
...|+.+||..++..
T Consensus 227 -~~~It~e~V~~~l~~ 241 (472)
T PRK14962 227 -EGKITLETVHEALGL 241 (472)
T ss_pred -CCCCCHHHHHHHHcC
Confidence 234899999887754
No 83
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.40 E-value=2.3e-11 Score=120.78 Aligned_cols=134 Identities=25% Similarity=0.255 Sum_probs=88.9
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC-ceEEeC----CCcccCCceE
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-SVITTG----LGSTSAGLTV 389 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~-~~~~~~----~~~~~~gl~~ 389 (663)
++.|++.++.++.-++.++ .-.|+||+||||||||+.+++.++.+.. ..+.++ +.+...|...
T Consensus 37 e~~gQe~vV~~L~~a~~~~------------~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGisv 104 (346)
T KOG0989|consen 37 ELAGQEHVVQVLKNALLRR------------ILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGISV 104 (346)
T ss_pred hhcchHHHHHHHHHHHhhc------------CCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhcccccccccc
Confidence 7789999999999998762 2379999999999999999999975433 222222 2222233321
Q ss_pred EEeecC-chhHhhhhhhh------hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 390 TAVKDG-GEWMLEAGALV------LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 390 ~~~~~~-~~~~~~~g~l~------~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
.+.. ..+..-..... ...-.|++|||.|.|..+.|++|.+.||+- +-.++++.-||..
T Consensus 105 --vr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~-------------s~~trFiLIcnyl 169 (346)
T KOG0989|consen 105 --VREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDF-------------SRTTRFILICNYL 169 (346)
T ss_pred --hhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhcc-------------ccceEEEEEcCCh
Confidence 1111 11110011110 011269999999999999999999999972 2234777778865
Q ss_pred CCCCCCCccccccCCChhhhhhhhh
Q 006051 463 GHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 463 g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
..++.++.||+.-
T Consensus 170 ------------srii~pi~SRC~K 182 (346)
T KOG0989|consen 170 ------------SRIIRPLVSRCQK 182 (346)
T ss_pred ------------hhCChHHHhhHHH
Confidence 3677899999854
No 84
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.40 E-value=2.8e-12 Score=149.14 Aligned_cols=224 Identities=15% Similarity=0.206 Sum_probs=138.5
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccC
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA 385 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~ 385 (663)
..+.+.+-..|+||+.+++++..++..... ......++..++||+||||||||.+|+++|+.+..+++...++....
T Consensus 446 ~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~---g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~ 522 (731)
T TIGR02639 446 KNLEKNLKAKIFGQDEAIDSLVSSIKRSRA---GLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYME 522 (731)
T ss_pred HHHHHHHhcceeCcHHHHHHHHHHHHHHhc---CCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhh
Confidence 456778888999999999988877753200 01111233346899999999999999999999887777665543221
Q ss_pred CceEEEeecC--chh-Hhhhh----hhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 386 GLTVTAVKDG--GEW-MLEAG----ALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 386 gl~~~~~~~~--~~~-~~~~g----~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
....+.+.+. |.. .-+.| ++.....+|++|||++++.++.++.|+++|++|.++.. .|....+ .++.+|+|
T Consensus 523 ~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~-~g~~vd~-~~~iii~T 600 (731)
T TIGR02639 523 KHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDN-NGRKADF-RNVILIMT 600 (731)
T ss_pred cccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecC-CCcccCC-CCCEEEEC
Confidence 1111111110 100 00122 22334678999999999999999999999999998643 2333222 36789999
Q ss_pred eCCCC-C-------CCCCC-----ccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCC
Q 006051 459 TNPKG-H-------YDPNL-----SLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDI 525 (663)
Q Consensus 459 tN~~g-~-------~d~~~-----~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 525 (663)
+|... . |.... .......+.|+|++|||.++.+.....++..+++...+ +.
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L-~~--------------- 664 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFV-DE--------------- 664 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHH-HH---------------
Confidence 99741 1 11100 00011347899999999999887766666655544322 11
Q ss_pred CCHHHHHHHHHHHHccCCCccCHHHHHHHHHH
Q 006051 526 WPLAMLRRYIYFVKGYFKPILTKEAEKVISSY 557 (663)
Q Consensus 526 ~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~ 557 (663)
+.+.+ ..+.+.-.+++++.+.|...
T Consensus 665 -----l~~~l--~~~~~~l~i~~~a~~~La~~ 689 (731)
T TIGR02639 665 -----LSKQL--NEKNIKLELTDDAKKYLAEK 689 (731)
T ss_pred -----HHHHH--HhCCCeEEeCHHHHHHHHHh
Confidence 11111 12234567888888877764
No 85
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.39 E-value=1.1e-12 Score=146.35 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=90.2
Q ss_pred cccCchhHHHHHHHHHHhC--CceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE
Q 006051 314 PQVFGLFTVKLAVALTLIG--GVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~--g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~ 391 (663)
.+|.|++.+|..+.-.+.- ........| .+.+.++||+||||||||++++++++.+..+++...........
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g--~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~---- 128 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLG--AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF---- 128 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcC--CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHH----
Confidence 3678888888766533221 000000111 34456899999999999999999999988887764321110000
Q ss_pred eecCchhHhhhhhhh---hccCCeeecccccccChhhH--------------HhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 392 VKDGGEWMLEAGALV---LADGGLCCIDEFDSMREHDR--------------ATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 392 ~~~~~~~~~~~g~l~---~a~~gvl~iDEid~l~~~~~--------------~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
.+.+...+ ...+. ...++|+||||+|.+..... +.++..|+. . .-...+.
T Consensus 129 -~g~~~~~l-~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~---------~--~~~~~v~ 195 (495)
T TIGR01241 129 -VGVGASRV-RDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDG---------F--GTNTGVI 195 (495)
T ss_pred -hcccHHHH-HHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhcc---------c--cCCCCeE
Confidence 00011000 01111 23468999999999754321 122222321 0 0123578
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHH
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSS 505 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~ 505 (663)
||+|||++.. +.+++++ |||..+.+. .|+.+.+..+.+
T Consensus 196 vI~aTn~~~~------------ld~al~r~gRfd~~i~i~-~Pd~~~R~~il~ 235 (495)
T TIGR01241 196 VIAATNRPDV------------LDPALLRPGRFDRQVVVD-LPDIKGREEILK 235 (495)
T ss_pred EEEecCChhh------------cCHHHhcCCcceEEEEcC-CCCHHHHHHHHH
Confidence 9999998743 4458887 999998884 455444444433
No 86
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.39 E-value=6.3e-13 Score=130.51 Aligned_cols=168 Identities=23% Similarity=0.264 Sum_probs=100.5
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeec
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD 394 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~ 394 (663)
+|.|.+.+|+|+--+.+-.+.-..-...+.++...|||+||||||||.||+++|..+...|+... ++.|.
T Consensus 134 DVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvS----SSDLv------ 203 (439)
T KOG0739|consen 134 DVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVS----SSDLV------ 203 (439)
T ss_pred hhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEee----hHHHH------
Confidence 67899988888877665544332111123345578999999999999999999999887666532 12222
Q ss_pred CchhHhhhhh-----hhhc---cCCeeecccccccChh----hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 395 GGEWMLEAGA-----LVLA---DGGLCCIDEFDSMREH----DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 395 ~~~~~~~~g~-----l~~a---~~gvl~iDEid~l~~~----~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
..|..+... +.+| .+.|+||||||.+... ...+-.++--+-.+.+.-.|. -+..+.|++|||.+
T Consensus 204 -SKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~---d~~gvLVLgATNiP 279 (439)
T KOG0739|consen 204 -SKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGN---DNDGVLVLGATNIP 279 (439)
T ss_pred -HHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhcccc---CCCceEEEecCCCc
Confidence 223333222 2233 5789999999987321 111211111111111111121 14567899999988
Q ss_pred CCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCC
Q 006051 463 GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGL 513 (663)
Q Consensus 463 g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~ 513 (663)
..+| .|+++||+-.+.+ ..|+... ..++.+.|.+
T Consensus 280 w~LD------------sAIRRRFekRIYI-PLPe~~A----R~~MF~lhlG 313 (439)
T KOG0739|consen 280 WVLD------------SAIRRRFEKRIYI-PLPEAHA----RARMFKLHLG 313 (439)
T ss_pred hhHH------------HHHHHHhhcceec-cCCcHHH----hhhhheeccC
Confidence 5544 4999999998887 3343332 3456666654
No 87
>CHL00176 ftsH cell division protein; Validated
Probab=99.39 E-value=1.3e-12 Score=147.44 Aligned_cols=162 Identities=19% Similarity=0.194 Sum_probs=90.8
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
+.+|.|.+.+|+.+.-.+.--...........+.+.++||+||||||||++|++++..+..+++...........
T Consensus 182 f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~----- 256 (638)
T CHL00176 182 FRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF----- 256 (638)
T ss_pred HHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh-----
Confidence 457889998887665432211000000111234457899999999999999999999988887764332110000
Q ss_pred ecCchhHhhhhhhhh---ccCCeeecccccccCh-----------hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 393 KDGGEWMLEAGALVL---ADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 393 ~~~~~~~~~~g~l~~---a~~gvl~iDEid~l~~-----------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
.+.+...+ ...+.. ..++|+||||+|.+.. ..+..+.+.+..- .|. .-+.++.||||
T Consensus 257 ~g~~~~~v-r~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~------dg~--~~~~~ViVIaa 327 (638)
T CHL00176 257 VGVGAARV-RDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEM------DGF--KGNKGVIVIAA 327 (638)
T ss_pred hhhhHHHH-HHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhh------ccc--cCCCCeeEEEe
Confidence 00010000 011112 2467999999998842 1223333333221 011 01346789999
Q ss_pred eCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHH
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDA 501 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~ 501 (663)
||.... +.++|++ |||..+.+ +.|+.+.+.
T Consensus 328 TN~~~~------------LD~ALlRpGRFd~~I~v-~lPd~~~R~ 359 (638)
T CHL00176 328 TNRVDI------------LDAALLRPGRFDRQITV-SLPDREGRL 359 (638)
T ss_pred cCchHh------------hhhhhhccccCceEEEE-CCCCHHHHH
Confidence 998743 3457886 89998888 445544433
No 88
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.39 E-value=2.7e-12 Score=137.69 Aligned_cols=224 Identities=20% Similarity=0.180 Sum_probs=125.6
Q ss_pred ccCchhHHHHHHHHHHhCCceeec-CCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
+|.|++..++.+.-.+.....+.. .....+..+.++||+||||||||++|+++++.+...++...... +.... .
T Consensus 123 di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~----l~~~~-~ 197 (364)
T TIGR01242 123 DIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSE----LVRKY-I 197 (364)
T ss_pred HhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHH----HHHHh-h
Confidence 567777766666554432211100 00111334567999999999999999999998887776542111 11000 0
Q ss_pred cCchhHhhhhhhhh---ccCCeeecccccccCh-----------hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEee
Q 006051 394 DGGEWMLEAGALVL---ADGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (663)
Q Consensus 394 ~~~~~~~~~g~l~~---a~~gvl~iDEid~l~~-----------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat 459 (663)
+.+.... ...+.. ..++|+||||+|.+.. ..+..+.+.+.+-. +. .-..++.||+||
T Consensus 198 g~~~~~i-~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld------~~--~~~~~v~vI~tt 268 (364)
T TIGR01242 198 GEGARLV-REIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD------GF--DPRGNVKVIAAT 268 (364)
T ss_pred hHHHHHH-HHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh------CC--CCCCCEEEEEec
Confidence 0011111 111112 2457999999999732 23344555543311 10 012467899999
Q ss_pred CCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 006051 460 NPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYF 537 (663)
Q Consensus 460 N~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 537 (663)
|.... +++++++ |||..+.+..+..++...++..|.....
T Consensus 269 n~~~~------------ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~-------------------------- 310 (364)
T TIGR01242 269 NRPDI------------LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMK-------------------------- 310 (364)
T ss_pred CChhh------------CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCC--------------------------
Confidence 98643 4457776 9998887744333333333322211110
Q ss_pred HHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 538 VKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 538 ~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
+.+.++ ...+... ....+.+.+.++++.|..+|-.+.+..|+.+|+..|+.-+
T Consensus 311 ----l~~~~~---~~~la~~-----------t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 311 ----LAEDVD---LEAIAKM-----------TEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred ----CCccCC---HHHHHHH-----------cCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 011111 0111111 1234678889999999999988889999999999998653
No 89
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.38 E-value=1.4e-11 Score=132.98 Aligned_cols=209 Identities=17% Similarity=0.142 Sum_probs=125.7
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce----EEeCC---------
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV----ITTGL--------- 380 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~----~~~~~--------- 380 (663)
.++.|++.+...|..++..| +-...+||+||||||||++|+.+++.....- ..++.
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~-----------ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~ 86 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSG-----------KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITK 86 (484)
T ss_pred HHHhChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHc
Confidence 37899999999988888765 1113489999999999999999998764321 01110
Q ss_pred CcccCC--ceEEEeecCch-hHhhhhhhh---hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 381 GSTSAG--LTVTAVKDGGE-WMLEAGALV---LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 381 ~~~~~g--l~~~~~~~~~~-~~~~~g~l~---~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
+....- +.++...+... ..+...... .....|++|||+++|+.+.+++|+..||+- +..+.
T Consensus 87 g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEP-------------p~~vi 153 (484)
T PRK14956 87 GISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEP-------------PAHIV 153 (484)
T ss_pred cCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcC-------------CCceE
Confidence 000000 00000000000 000011111 122349999999999999999999999862 34556
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHH
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRY 534 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~ 534 (663)
+|.+||.. ..++++++||+.. +.+.. ++.+.+..|
T Consensus 154 FILaTte~------------~kI~~TI~SRCq~-~~f~~--------------------------------ls~~~i~~~ 188 (484)
T PRK14956 154 FILATTEF------------HKIPETILSRCQD-FIFKK--------------------------------VPLSVLQDY 188 (484)
T ss_pred EEeecCCh------------hhccHHHHhhhhe-eeecC--------------------------------CCHHHHHHH
Confidence 77666643 2677899999842 33322 334444444
Q ss_pred HHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHH
Q 006051 535 IYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 535 i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l 607 (663)
+...-..-...++++|..+|..+ ..+++|...+++..+.+.+ ...|+.++|..++.+
T Consensus 189 L~~i~~~Egi~~e~eAL~~Ia~~------------S~Gd~RdAL~lLeq~i~~~----~~~it~~~V~~~lg~ 245 (484)
T PRK14956 189 SEKLCKIENVQYDQEGLFWIAKK------------GDGSVRDMLSFMEQAIVFT----DSKLTGVKIRKMIGY 245 (484)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH------------cCChHHHHHHHHHHHHHhC----CCCcCHHHHHHHhCC
Confidence 44332222446788888888876 3456888888876544332 235888888776544
No 90
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=1.9e-12 Score=145.50 Aligned_cols=223 Identities=17% Similarity=0.187 Sum_probs=145.6
Q ss_pred HHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcc
Q 006051 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGST 383 (663)
Q Consensus 307 ~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~ 383 (663)
.+-+.+...|+||+.+..++.-++--. ...-+...|+.-..||.||+|+|||.||+++|..+. ..++..+++..
T Consensus 484 ~le~~L~~rViGQd~AV~avs~aIrra---RaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy 560 (786)
T COG0542 484 NLERRLKKRVIGQDEAVEAVSDAIRRA---RAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEY 560 (786)
T ss_pred HHHHHHhcceeChHHHHHHHHHHHHHH---hcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHH
Confidence 456678899999998777666555311 111233445556789999999999999999999766 56777666655
Q ss_pred cCCceEEEeecC--ch-hHhhhhhhhhc----cCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 384 SAGLTVTAVKDG--GE-WMLEAGALVLA----DGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 384 ~~gl~~~~~~~~--~~-~~~~~g~l~~a----~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
...-+.+.+.+. |- -+-+.|.|..| ...|+++|||++..++..+.|+++|++|.++-.+...+ . -.++.||
T Consensus 561 ~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~V-d-FrNtiII 638 (786)
T COG0542 561 MEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRTV-D-FRNTIII 638 (786)
T ss_pred HHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCEE-e-cceeEEE
Confidence 433333333332 11 11235556544 35799999999999999999999999999876544322 2 2467899
Q ss_pred EeeCCCC-----CC--CC---CCc------cccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCC
Q 006051 457 GATNPKG-----HY--DP---NLS------LSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTE 520 (663)
Q Consensus 457 aatN~~g-----~~--d~---~~~------~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~ 520 (663)
.|+|-.. .. +. ... ...+..++|.|++|+|-++.+.....+...+++...+-.
T Consensus 639 mTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~----------- 707 (786)
T COG0542 639 MTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNR----------- 707 (786)
T ss_pred EecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHH-----------
Confidence 9999731 11 00 001 122245889999999998888666655555554433221
Q ss_pred CCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHH
Q 006051 521 PLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSY 557 (663)
Q Consensus 521 ~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~ 557 (663)
+.+-+. ++.+.-.+++++.+.|..-
T Consensus 708 ----------l~~~L~--~~~i~l~~s~~a~~~l~~~ 732 (786)
T COG0542 708 ----------LAKRLA--ERGITLELSDEAKDFLAEK 732 (786)
T ss_pred ----------HHHHHH--hCCceEEECHHHHHHHHHh
Confidence 222222 4467778999998887754
No 91
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.9e-12 Score=139.09 Aligned_cols=175 Identities=21% Similarity=0.319 Sum_probs=114.0
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~ 391 (663)
+-.+-||++++|+-|+-.++-|.-+.. .+| .-+||+||||+|||+++|.||+.++|-|+....|+.. ..+.
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs-----~qG-kIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~t---DvAe 479 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGS-----VQG-KILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMT---DVAE 479 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhccc-----CCC-cEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccc---cHHh
Confidence 456779999999999988876533222 222 4599999999999999999999999999876544322 2233
Q ss_pred eecCch-hH-hhhhhhhhc------cCCeeecccccccCh----hhHHhHHHHHHhceee-eeccCceeec-CCcEEEEE
Q 006051 392 VKDGGE-WM-LEAGALVLA------DGGLCCIDEFDSMRE----HDRATIHEAMEQQTIS-VAKAGLVTTL-STRTIIFG 457 (663)
Q Consensus 392 ~~~~~~-~~-~~~g~l~~a------~~gvl~iDEid~l~~----~~~~~L~~~me~~~i~-i~k~g~~~~~-~~~~~iia 457 (663)
++++.. ++ .-||.++.+ .+-+++|||+|++.. +-.++|+++|+--+-. ....-....+ -.++.|||
T Consensus 480 IkGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFic 559 (906)
T KOG2004|consen 480 IKGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFIC 559 (906)
T ss_pred hcccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEE
Confidence 444321 11 126666543 567999999999864 3457899999632211 1111111111 14779999
Q ss_pred eeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 458 ATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 458 atN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
|+|.. -.+|+||++|..+|- +..+..++.-.+..+|++
T Consensus 560 TAN~i------------dtIP~pLlDRMEvIe-lsGYv~eEKv~IA~~yLi 597 (906)
T KOG2004|consen 560 TANVI------------DTIPPPLLDRMEVIE-LSGYVAEEKVKIAERYLI 597 (906)
T ss_pred ecccc------------ccCChhhhhhhheee-ccCccHHHHHHHHHHhhh
Confidence 99986 368899999998654 434444444344344444
No 92
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.37 E-value=3.3e-12 Score=137.91 Aligned_cols=228 Identities=18% Similarity=0.125 Sum_probs=126.8
Q ss_pred ccCchhHHHHHHHHHHhCCcee-ecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
+|.|++..++.+--++.-.... .......+..+.++||+||||||||++|+++|+.+...++...... +.....
T Consensus 184 DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se----L~~k~~- 258 (438)
T PTZ00361 184 DIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE----LIQKYL- 258 (438)
T ss_pred HhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch----hhhhhc-
Confidence 5688876655544333211110 0001122455678999999999999999999998887776542211 111010
Q ss_pred cCchhHhhhhhhhhc---cCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEee
Q 006051 394 DGGEWMLEAGALVLA---DGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (663)
Q Consensus 394 ~~~~~~~~~g~l~~a---~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat 459 (663)
+.+... ....+..| .++|+||||+|.+... .+..+.+.+.+-. |.. -..++.||+||
T Consensus 259 Ge~~~~-vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld------g~~--~~~~V~VI~AT 329 (438)
T PTZ00361 259 GDGPKL-VRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD------GFD--SRGDVKVIMAT 329 (438)
T ss_pred chHHHH-HHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh------hhc--ccCCeEEEEec
Confidence 111111 11122222 4579999999987321 2333444443211 110 12357899999
Q ss_pred CCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 006051 460 NPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYF 537 (663)
Q Consensus 460 N~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 537 (663)
|... .+.+++++ |||..+.+. .++.+....|.+..+..... ...+ .+..++.
T Consensus 330 Nr~d------------~LDpaLlRpGRfd~~I~~~-~Pd~~~R~~Il~~~~~k~~l---------~~dv---dl~~la~- 383 (438)
T PTZ00361 330 NRIE------------SLDPALIRPGRIDRKIEFP-NPDEKTKRRIFEIHTSKMTL---------AEDV---DLEEFIM- 383 (438)
T ss_pred CChH------------HhhHHhccCCeeEEEEEeC-CCCHHHHHHHHHHHHhcCCC---------CcCc---CHHHHHH-
Confidence 9763 34457875 999998884 44444333332222111100 0000 0111110
Q ss_pred HHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 538 VKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 538 ~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
. ....|...+.++++-|...|--+.+..|+.+|+..|+.-+....
T Consensus 384 -------------------~-----------t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~~ 428 (438)
T PTZ00361 384 -------------------A-----------KDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYRK 428 (438)
T ss_pred -------------------h-----------cCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhhc
Confidence 0 12356777888898888888888889999999999998875543
No 93
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.36 E-value=9.2e-12 Score=146.90 Aligned_cols=239 Identities=15% Similarity=0.162 Sum_probs=146.0
Q ss_pred HHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcc
Q 006051 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGST 383 (663)
Q Consensus 307 ~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~ 383 (663)
.+-+.+...|+|++.+..++.-++...... -....|+...+||+||||||||.+|+++|+.+. .+++..+++..
T Consensus 558 ~l~~~l~~~v~GQ~~av~~v~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~ 634 (852)
T TIGR03346 558 HMEEVLHERVVGQDEAVEAVSDAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEY 634 (852)
T ss_pred HHHHHhhcccCCChHHHHHHHHHHHHHhcc---CCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhh
Confidence 455667788999998888877766532000 001123445799999999999999999998753 34555444332
Q ss_pred cCCceEEEeecC--chh-Hhhhhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 384 SAGLTVTAVKDG--GEW-MLEAGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 384 ~~gl~~~~~~~~--~~~-~~~~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
......+.+.+. |-. ..+.|.+ ......|++||||++++++.++.|+++|++|.++.. .|....+ .++.||
T Consensus 635 ~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~-~g~~vd~-rn~iiI 712 (852)
T TIGR03346 635 MEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDG-QGRTVDF-RNTVII 712 (852)
T ss_pred cccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecC-CCeEEec-CCcEEE
Confidence 211111111110 000 0012333 223456999999999999999999999999998643 2333333 357899
Q ss_pred EeeCCC-CCCCC---C---Ccc------ccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCC
Q 006051 457 GATNPK-GHYDP---N---LSL------SVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLT 523 (663)
Q Consensus 457 aatN~~-g~~d~---~---~~~------~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 523 (663)
+|||.. ..+.. . ... .....+.|.|+.|+|.++.+.....++...++. ..+.
T Consensus 713 ~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~-l~L~-------------- 777 (852)
T TIGR03346 713 MTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVE-IQLG-------------- 777 (852)
T ss_pred EeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHH-HHHH--------------
Confidence 999984 11100 0 000 123457899999999988886655555444332 2221
Q ss_pred CCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCc--cccHhHHHHHHHHH
Q 006051 524 DIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAA--RTTVRMLESLIRLA 584 (663)
Q Consensus 524 ~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~--~~t~R~Le~lirla 584 (663)
.+.+.+ ..+.+...+++++.+.|.++ .| +...|.|+.+++-.
T Consensus 778 ------~l~~~l--~~~~~~l~i~~~a~~~L~~~-----------~~~~~~gaR~L~~~i~~~ 821 (852)
T TIGR03346 778 ------RLRKRL--AERKITLELSDAALDFLAEA-----------GYDPVYGARPLKRAIQRE 821 (852)
T ss_pred ------HHHHHH--HHCCCeecCCHHHHHHHHHh-----------CCCCCCCchhHHHHHHHH
Confidence 222222 12245678999999998876 33 67788888888643
No 94
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.35 E-value=2.9e-11 Score=135.09 Aligned_cols=220 Identities=21% Similarity=0.221 Sum_probs=126.8
Q ss_pred HHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc
Q 006051 292 QFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-++++|+...| .+|+||+.+++.|.-.+.+| |-.+-+||+|++|||||++++.+++.+
T Consensus 5 vLarKYRPqtF-----------dEVIGQe~Vv~~L~~aL~~g-----------RL~HAyLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 5 VLARKWRPKDF-----------ASLVGQEHVVRALTHALDGG-----------RLHHAYLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred hHHHHhCCCcH-----------HHHcCcHHHHHHHHHHHhcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35566655554 37899999999999888765 122345999999999999999999865
Q ss_pred CCceEE--eCCCc------ccCC--ceEEEee---cCc--hh--Hhhhhhh--hhccCCeeecccccccChhhHHhHHHH
Q 006051 372 NRSVIT--TGLGS------TSAG--LTVTAVK---DGG--EW--MLEAGAL--VLADGGLCCIDEFDSMREHDRATIHEA 432 (663)
Q Consensus 372 ~~~~~~--~~~~~------~~~g--l~~~~~~---~~~--~~--~~~~g~l--~~a~~gvl~iDEid~l~~~~~~~L~~~ 432 (663)
....-. ..++. ...| .....+. ..+ +. .++.-.. ......|++|||+++|+...++.|+..
T Consensus 63 nCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKt 142 (830)
T PRK07003 63 NCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKT 142 (830)
T ss_pred cCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHH
Confidence 421100 00100 0000 0110110 001 00 0110000 113457999999999999999999999
Q ss_pred HHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcC
Q 006051 433 MEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGG 512 (663)
Q Consensus 433 me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~ 512 (663)
||+- +..+.||.+||.. .+|+++++||| ..|.|....
T Consensus 143 LEEP-------------P~~v~FILaTtd~------------~KIp~TIrSRC-q~f~Fk~Ls----------------- 179 (830)
T PRK07003 143 LEEP-------------PPHVKFILATTDP------------QKIPVTVLSRC-LQFNLKQMP----------------- 179 (830)
T ss_pred HHhc-------------CCCeEEEEEECCh------------hhccchhhhhe-EEEecCCcC-----------------
Confidence 9973 2355677777754 25677999999 444443322
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccC
Q 006051 513 LSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMF 592 (663)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~ 592 (663)
.+.+..++...-..-...+++++...|.+. ..+++|...+++..+.++.
T Consensus 180 ---------------~eeIv~~L~~Il~~EgI~id~eAL~lIA~~------------A~GsmRdALsLLdQAia~~---- 228 (830)
T PRK07003 180 ---------------AGHIVSHLERILGEERIAFEPQALRLLARA------------AQGSMRDALSLTDQAIAYS---- 228 (830)
T ss_pred ---------------HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHHhc----
Confidence 333333332221122335677777777665 2345777777766544432
Q ss_pred CCccChhhHHHHHHH
Q 006051 593 RNEVTRLDAITAILC 607 (663)
Q Consensus 593 ~~~V~~~Dv~~Ai~l 607 (663)
...|+.++|...+.+
T Consensus 229 ~~~It~~~V~~~LG~ 243 (830)
T PRK07003 229 ANEVTETAVSGMLGA 243 (830)
T ss_pred cCCcCHHHHHHHhCC
Confidence 245677666654433
No 95
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.35 E-value=2.6e-11 Score=132.10 Aligned_cols=202 Identities=22% Similarity=0.238 Sum_probs=118.5
Q ss_pred ccCchhHHHH--H-HHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE
Q 006051 315 QVFGLFTVKL--A-VALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 315 ~i~G~~~~K~--a-ill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~ 391 (663)
+++|++.+.. . +.-.+.++ ...+++|+||||||||++|+.+++.....++....... +
T Consensus 13 d~vGq~~~v~~~~~L~~~i~~~------------~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~--~----- 73 (413)
T PRK13342 13 EVVGQEHLLGPGKPLRRMIEAG------------RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS--G----- 73 (413)
T ss_pred HhcCcHHHhCcchHHHHHHHcC------------CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc--c-----
Confidence 6788886632 2 44444332 12589999999999999999999988776665432211 1
Q ss_pred eecCchhHhhhh-hhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCc
Q 006051 392 VKDGGEWMLEAG-ALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLS 470 (663)
Q Consensus 392 ~~~~~~~~~~~g-~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~ 470 (663)
..+-........ ......++|+||||++.+....++.|+..|+++.+ .++++++...
T Consensus 74 ~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~i---------------ilI~att~n~------- 131 (413)
T PRK13342 74 VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTI---------------TLIGATTENP------- 131 (413)
T ss_pred HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcE---------------EEEEeCCCCh-------
Confidence 000011111110 01122567999999999999999999999987654 5666654321
Q ss_pred cccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHH
Q 006051 471 LSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEA 550 (663)
Q Consensus 471 ~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea 550 (663)
...+.++|++|| .++.+.....++....+. +++... ...+ ..+++++
T Consensus 132 ---~~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~-~~l~~~---------------------------~~~~-i~i~~~a 178 (413)
T PRK13342 132 ---SFEVNPALLSRA-QVFELKPLSEEDIEQLLK-RALEDK---------------------------ERGL-VELDDEA 178 (413)
T ss_pred ---hhhccHHHhccc-eeeEeCCCCHHHHHHHHH-HHHHHh---------------------------hcCC-CCCCHHH
Confidence 024567999999 445554433333322222 111110 0011 2466777
Q ss_pred HHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHH
Q 006051 551 EKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 551 ~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l 607 (663)
.+.|..+ ..+++|.+.+++..+... ...|+.+++..++.-
T Consensus 179 l~~l~~~------------s~Gd~R~aln~Le~~~~~-----~~~It~~~v~~~~~~ 218 (413)
T PRK13342 179 LDALARL------------ANGDARRALNLLELAALG-----VDSITLELLEEALQK 218 (413)
T ss_pred HHHHHHh------------CCCCHHHHHHHHHHHHHc-----cCCCCHHHHHHHHhh
Confidence 6666654 134677777777654432 456788887777654
No 96
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.34 E-value=3e-11 Score=138.22 Aligned_cols=211 Identities=21% Similarity=0.186 Sum_probs=122.6
Q ss_pred cccCchhHHHH--HHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE
Q 006051 314 PQVFGLFTVKL--AVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 314 p~i~G~~~~K~--aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~ 391 (663)
.+++|++.+.. ..+..++.. ....|++|+||||||||++|+++++.....++..... ..++
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~-----------~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~--~~~i---- 90 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA-----------DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAV--LAGV---- 90 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhh--hhhh----
Confidence 36789987653 333333331 1125899999999999999999999876555443221 1111
Q ss_pred eecCchhHhhh-hhhh-hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCC
Q 006051 392 VKDGGEWMLEA-GALV-LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (663)
Q Consensus 392 ~~~~~~~~~~~-g~l~-~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~ 469 (663)
.+..+....+ ..+. ...++++||||++.++...++.|+..||++.+ .+|++|++...
T Consensus 91 -~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~I---------------iLI~aTTenp~----- 149 (725)
T PRK13341 91 -KDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGTI---------------TLIGATTENPY----- 149 (725)
T ss_pred -HHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCceE---------------EEEEecCCChH-----
Confidence 1111111111 0111 12457999999999999999999999987654 56776654310
Q ss_pred ccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHH
Q 006051 470 SLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKE 549 (663)
Q Consensus 470 ~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~e 549 (663)
..+.++++||+. ++.+.....++....+. +++..... .+. .-...++++
T Consensus 150 -----~~l~~aL~SR~~-v~~l~pLs~edi~~IL~-~~l~~~~~----------------------~~g--~~~v~I~de 198 (725)
T PRK13341 150 -----FEVNKALVSRSR-LFRLKSLSDEDLHQLLK-RALQDKER----------------------GYG--DRKVDLEPE 198 (725)
T ss_pred -----hhhhhHhhcccc-ceecCCCCHHHHHHHHH-HHHHHHHh----------------------hcC--CcccCCCHH
Confidence 245578999974 45554444333333322 22110000 000 123468888
Q ss_pred HHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCC--ccChhhHHHHH
Q 006051 550 AEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRN--EVTRLDAITAI 605 (663)
Q Consensus 550 a~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~--~V~~~Dv~~Ai 605 (663)
+.+.|.++ .++++|.+.++++.+...+...... .++.+++.+++
T Consensus 199 aL~~La~~------------s~GD~R~lln~Le~a~~~~~~~~~~~i~It~~~~~e~l 244 (725)
T PRK13341 199 AEKHLVDV------------ANGDARSLLNALELAVESTPPDEDGLIDITLAIAEESI 244 (725)
T ss_pred HHHHHHHh------------CCCCHHHHHHHHHHHHHhcccCCCCceeccHHHHHHHH
Confidence 88888876 2567999999998765443322221 26666666655
No 97
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.34 E-value=3.7e-12 Score=140.69 Aligned_cols=213 Identities=19% Similarity=0.237 Sum_probs=133.1
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
..++++.|++||||+.++++++..++ .+++...+...........+++. |......|.+..|++|++||||
T Consensus 162 ~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 162 EATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 241 (441)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEec
Confidence 37899999999999999999998766 45777666543322211112211 1112246778889999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhh-hhcCCCC
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVL-VLLDTKN 496 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~-~l~d~~~ 496 (663)
++.|++..|..|+++++++.+ .+.|.....+.++.+|+||+..-. .......+.+.|+.|+...- .++....
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~--~~~~~~~~~~~~~rii~~t~~~~~-----~~~~~~~~~~~l~~~l~~~~i~~ppLre 314 (441)
T PRK10365 242 IGDISPMMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAATHRDLA-----AEVNAGRFRQDLYYRLNVVAIEVPSLRQ 314 (441)
T ss_pred cccCCHHHHHHHHHHHccCcE--EeCCCCceeeeceEEEEeCCCCHH-----HHHHcCCchHHHHHHhccceecCCChhh
Confidence 999999999999999999886 444555666788899999987400 00001123334554543221 1211111
Q ss_pred hhHH-HHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHh
Q 006051 497 PEWD-AVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVR 575 (663)
Q Consensus 497 ~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R 575 (663)
...| ..++.++ +.++.... ..-.+.++++|.+.|..| +||+++|
T Consensus 315 R~~Di~~l~~~~-----------------------l~~~~~~~-~~~~~~~~~~a~~~L~~~-----------~wpgN~r 359 (441)
T PRK10365 315 RREDIPLLAGHF-----------------------LQRFAERN-RKAVKGFTPQAMDLLIHY-----------DWPGNIR 359 (441)
T ss_pred cchhHHHHHHHH-----------------------HHHHHHHh-CCCCCCcCHHHHHHHHhC-----------CCCCHHH
Confidence 0000 0112222 22221111 111346999999999998 8999999
Q ss_pred HHHHHHHHHHHHHhccCCCccChhhHHHH
Q 006051 576 MLESLIRLAQAHARLMFRNEVTRLDAITA 604 (663)
Q Consensus 576 ~Le~lirla~a~A~l~~~~~V~~~Dv~~A 604 (663)
+|+++++.+-..+. ...++.+|+...
T Consensus 360 eL~~~~~~~~~~~~---~~~i~~~~l~~~ 385 (441)
T PRK10365 360 ELENAVERAVVLLT---GEYISERELPLA 385 (441)
T ss_pred HHHHHHHHHHHhCC---CCccchHhCchh
Confidence 99999997655433 456787777543
No 98
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=6.7e-12 Score=140.33 Aligned_cols=227 Identities=21% Similarity=0.164 Sum_probs=129.6
Q ss_pred ccCchhHHHHHHHHHHhCCceeecC-CCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDA-SGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~-~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
++.|++.+|..+.-.+-........ .+..++.+..+||+||||||||++|++++..+...++....+. +...++-
T Consensus 243 diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~----l~sk~vG 318 (494)
T COG0464 243 DIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSE----LLSKWVG 318 (494)
T ss_pred hhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHH----Hhccccc
Confidence 5677887777666555443322111 1123566679999999999999999999999888888754432 2211111
Q ss_pred cCchhHhhhhhhh-hccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC
Q 006051 394 DGGEWMLEAGALV-LADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 394 ~~~~~~~~~g~l~-~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
......-+.-... ...++|+||||+|.+.+. ..+.++..|+... -..++.+|||||+
T Consensus 319 esek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e-----------~~~~v~vi~aTN~ 387 (494)
T COG0464 319 ESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE-----------KAEGVLVIAATNR 387 (494)
T ss_pred hHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC-----------ccCceEEEecCCC
Confidence 1111111111111 245799999999997432 2333444443211 1234689999999
Q ss_pred CCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCH-HHHHHHHHHH
Q 006051 462 KGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPL-AMLRRYIYFV 538 (663)
Q Consensus 462 ~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~-~~l~~~i~~~ 538 (663)
+.. +++++++ |||-++.+. .++.+.+..+..+.++... . .+.. -.++.+...
T Consensus 388 p~~------------ld~a~lR~gRfd~~i~v~-~pd~~~r~~i~~~~~~~~~----~-------~~~~~~~~~~l~~~- 442 (494)
T COG0464 388 PDD------------LDPALLRPGRFDRLIYVP-LPDLEERLEIFKIHLRDKK----P-------PLAEDVDLEELAEI- 442 (494)
T ss_pred ccc------------cCHhhcccCccceEeecC-CCCHHHHHHHHHHHhcccC----C-------cchhhhhHHHHHHH-
Confidence 854 4458999 999999884 4444443333332222111 0 0111 111111110
Q ss_pred HccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccC-CCccChhhHHHHHHHHHhh
Q 006051 539 KGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMF-RNEVTRLDAITAILCIESS 611 (663)
Q Consensus 539 r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~-~~~V~~~Dv~~Ai~l~~~s 611 (663)
....+-..+..+++-|...|.... +..|+..|...|+.-...|
T Consensus 443 ------------------------------t~~~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~p~ 486 (494)
T COG0464 443 ------------------------------TEGYSGADIAALVREAALEALREARRREVTLDDFLDALKKIKPS 486 (494)
T ss_pred ------------------------------hcCCCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcCCC
Confidence 011345667777777766666665 7789999999999875544
No 99
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.32 E-value=9.1e-11 Score=129.96 Aligned_cols=208 Identities=18% Similarity=0.111 Sum_probs=123.2
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEE--eCCCc------ccCC
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT--TGLGS------TSAG 386 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~--~~~~~------~~~g 386 (663)
+|+||+.+++.+.-++..+ |-++.+||+||||||||++|+.+++.+...-.. ..++. ...|
T Consensus 17 divGq~~v~~~L~~~~~~~-----------~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g 85 (509)
T PRK14958 17 EVIGQAPVVRALSNALDQQ-----------YLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEG 85 (509)
T ss_pred HhcCCHHHHHHHHHHHHhC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcC
Confidence 7899999999999988765 222347999999999999999999865421100 00000 0000
Q ss_pred c--eEEEee---cCchhHhh--hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 387 L--TVTAVK---DGGEWMLE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 387 l--~~~~~~---~~~~~~~~--~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
- ....+. ..+....+ ...+ ..+...|++|||+++|+.+..++|+..||+- +..+.+
T Consensus 86 ~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEep-------------p~~~~f 152 (509)
T PRK14958 86 RFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEP-------------PSHVKF 152 (509)
T ss_pred CCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhcc-------------CCCeEE
Confidence 0 000000 00110000 0001 1124469999999999999999999999962 344566
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
|.+||.. ..++++++||+ ..+.+.. ++.+.+.+++
T Consensus 153 Ilattd~------------~kl~~tI~SRc-~~~~f~~--------------------------------l~~~~i~~~l 187 (509)
T PRK14958 153 ILATTDH------------HKLPVTVLSRC-LQFHLAQ--------------------------------LPPLQIAAHC 187 (509)
T ss_pred EEEECCh------------HhchHHHHHHh-hhhhcCC--------------------------------CCHHHHHHHH
Confidence 6666532 24667899998 4444432 2333333333
Q ss_pred HHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHH
Q 006051 536 YFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l 607 (663)
...-+.-...+++++.+.|.+. ..+++|...+++.-+.+. ....|+.+||...+..
T Consensus 188 ~~il~~egi~~~~~al~~ia~~------------s~GslR~al~lLdq~ia~----~~~~It~~~V~~~lg~ 243 (509)
T PRK14958 188 QHLLKEENVEFENAALDLLARA------------ANGSVRDALSLLDQSIAY----GNGKVLIADVKTMLGT 243 (509)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH------------cCCcHHHHHHHHHHHHhc----CCCCcCHHHHHHHHCC
Confidence 2222222345677777777665 235688888887644333 3567899888876543
No 100
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=9.9e-12 Score=138.77 Aligned_cols=156 Identities=24% Similarity=0.283 Sum_probs=96.3
Q ss_pred ccccCchhHHHHHHHHHH--hCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 313 CPQVFGLFTVKLAVALTL--IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l--~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
+.++.|.+.+|.-|.--. ..+......-| .+-+..+||+||||||||.||+++|..++-||+.........
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lG--AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE----- 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELG--AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE----- 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcC--CcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH-----
Confidence 668899999998776432 22222222233 345678999999999999999999999999998853221110
Q ss_pred EeecCchhHhhhhhhhhc---cCCeeecccccccChhhH------------HhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 391 AVKDGGEWMLEAGALVLA---DGGLCCIDEFDSMREHDR------------ATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 391 ~~~~~~~~~~~~g~l~~a---~~gvl~iDEid~l~~~~~------------~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
...+......-..+..| .+.|+||||||.+..... ..|.+.+- .-+|... ...+.+
T Consensus 383 -~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~------emDgf~~--~~~vi~ 453 (774)
T KOG0731|consen 383 -MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLV------EMDGFET--SKGVIV 453 (774)
T ss_pred -HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHH------HhcCCcC--CCcEEE
Confidence 00010011111222223 468999999998754321 12222221 1223222 256899
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCCh
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNP 497 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~ 497 (663)
+|+||..+-.|+ ||++ |||-.+.+ +.|+.
T Consensus 454 ~a~tnr~d~ld~------------allrpGRfdr~i~i-~~p~~ 484 (774)
T KOG0731|consen 454 LAATNRPDILDP------------ALLRPGRFDRQIQI-DLPDV 484 (774)
T ss_pred EeccCCccccCH------------HhcCCCccccceec-cCCch
Confidence 999999865554 8888 99999988 54543
No 101
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.31 E-value=2.4e-11 Score=142.94 Aligned_cols=250 Identities=14% Similarity=0.163 Sum_probs=148.0
Q ss_pred CCCCHHHHHHHHHHHHhh-----cCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCcccccccccccc
Q 006051 280 IDIPDDIIMQFKQFWSEF-----KDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVG 354 (663)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G 354 (663)
..++.+++..+-.-|... ..+.......+.+.+...|+||+.+..++.-++...... -....|+...+||+|
T Consensus 470 ~~v~~~~i~~~~~~~tgip~~~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~lf~G 546 (821)
T CHL00095 470 PVVTEEDIAEIVSAWTGIPVNKLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVG---LKNPNRPIASFLFSG 546 (821)
T ss_pred CccCHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhc---ccCCCCCceEEEEEC
Confidence 346677776665555322 111111123567788899999999998887777532100 011123334589999
Q ss_pred CCCchHHHHHHHHHHhc---CCceEEeCCCcccCCceEEEeecC--chh-Hhhhh----hhhhccCCeeecccccccChh
Q 006051 355 DPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDG--GEW-MLEAG----ALVLADGGLCCIDEFDSMREH 424 (663)
Q Consensus 355 ~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~~gl~~~~~~~~--~~~-~~~~g----~l~~a~~gvl~iDEid~l~~~ 424 (663)
|||||||.+|+++|+.+ ..+++..+.+........+.+.+. |-. ..+.| .+.....+|++|||++++.++
T Consensus 547 p~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~ 626 (821)
T CHL00095 547 PTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPD 626 (821)
T ss_pred CCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHH
Confidence 99999999999999875 234544443322111111111110 000 00112 222334579999999999999
Q ss_pred hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCC----------CCCCC------cc---c------cccCCCh
Q 006051 425 DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGH----------YDPNL------SL---S------VNTTLSG 479 (663)
Q Consensus 425 ~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~----------~d~~~------~~---~------~~~~l~~ 479 (663)
.++.|+++||+|.++... |....+ .++.+|.|+|.... |.... .+ . ....+.|
T Consensus 627 v~~~Llq~le~g~~~d~~-g~~v~~-~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 704 (821)
T CHL00095 627 IFNLLLQILDDGRLTDSK-GRTIDF-KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRP 704 (821)
T ss_pred HHHHHHHHhccCceecCC-CcEEec-CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCH
Confidence 999999999999987543 444333 47899999997411 22100 00 0 0123789
Q ss_pred hhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHH
Q 006051 480 PLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSY 557 (663)
Q Consensus 480 aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~ 557 (663)
.|++|+|.++.+.....++..+++...+-. +.+- ...+.+...+++++.+.|...
T Consensus 705 eflnRid~ii~F~pL~~~~l~~Iv~~~l~~---------------------l~~r--l~~~~i~l~~~~~~~~~La~~ 759 (821)
T CHL00095 705 EFLNRLDEIIVFRQLTKNDVWEIAEIMLKN---------------------LFKR--LNEQGIQLEVTERIKTLLIEE 759 (821)
T ss_pred HHhccCCeEEEeCCCCHHHHHHHHHHHHHH---------------------HHHH--HHHCCcEEEECHHHHHHHHHh
Confidence 999999999888776666665544332211 1111 123346677899998877764
No 102
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=6e-11 Score=135.04 Aligned_cols=187 Identities=19% Similarity=0.141 Sum_probs=111.0
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccc-cccccCCCchHHHHHHHHHHhcCCceEEeC--CCc------ccC
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESH-LLLVGDPGTGKSQFLKFAAKLSNRSVITTG--LGS------TSA 385 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~-iLL~G~pGtGKs~lar~ia~~~~~~~~~~~--~~~------~~~ 385 (663)
+|+||+.++..|.-++..| |- .| +||+||||||||++||.+++.+...-...+ ++. ...
T Consensus 17 dIIGQe~Iv~~LknaI~~~-----------rl-~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~ 84 (944)
T PRK14949 17 QMVGQSHVLHALTNALTQQ-----------RL-HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQ 84 (944)
T ss_pred HhcCcHHHHHHHHHHHHhC-----------CC-CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhc
Confidence 7889999999988887664 11 45 589999999999999999987654211000 000 000
Q ss_pred Cc--eEEEeec---CchhHhh--hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 386 GL--TVTAVKD---GGEWMLE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 386 gl--~~~~~~~---~~~~~~~--~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
|. ....+.. .+...++ ...+ ..+...|++|||+++|+.+.+++|+..||+- +..+.
T Consensus 85 g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEP-------------P~~vr 151 (944)
T PRK14949 85 GRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEP-------------PEHVK 151 (944)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcc-------------CCCeE
Confidence 10 0110100 0100000 0001 1134569999999999999999999999972 33445
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHH
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRY 534 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~ 534 (663)
+|.+||.. ..+.+++++|+ .+|.+. .++.+.+..|
T Consensus 152 FILaTTe~------------~kLl~TIlSRC-q~f~fk--------------------------------pLs~eEI~~~ 186 (944)
T PRK14949 152 FLLATTDP------------QKLPVTVLSRC-LQFNLK--------------------------------SLTQDEIGTQ 186 (944)
T ss_pred EEEECCCc------------hhchHHHHHhh-eEEeCC--------------------------------CCCHHHHHHH
Confidence 66656543 14667899998 334332 3455555555
Q ss_pred HHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHH
Q 006051 535 IYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRL 583 (663)
Q Consensus 535 i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirl 583 (663)
+...-..-...+++++.+.|..+ ..+++|...+++..
T Consensus 187 L~~il~~EgI~~edeAL~lIA~~------------S~Gd~R~ALnLLdQ 223 (944)
T PRK14949 187 LNHILTQEQLPFEAEALTLLAKA------------ANGSMRDALSLTDQ 223 (944)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHH
Confidence 54432222345677777777765 23557766666653
No 103
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=4.6e-11 Score=132.19 Aligned_cols=205 Identities=20% Similarity=0.161 Sum_probs=119.0
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce-EE-eCCC----------c
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-IT-TGLG----------S 382 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~-~~-~~~~----------~ 382 (663)
+|+|++.+++.|.-++..| |-...+||+||||+|||++|+.+|+.....- .. ..++ +
T Consensus 16 dVIGQe~vv~~L~~aI~~g-----------rl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g 84 (702)
T PRK14960 16 ELVGQNHVSRALSSALERG-----------RLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEG 84 (702)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcC
Confidence 7899999999999888765 2235679999999999999999998754211 00 0000 0
Q ss_pred ccCCce-EEE-eecC-chh--Hhhhhhh--hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 383 TSAGLT-VTA-VKDG-GEW--MLEAGAL--VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 383 ~~~gl~-~~~-~~~~-~~~--~~~~g~l--~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
....+. ... ...+ .+. .+..... ..+...|++|||+++|+....++|+..||+- +..+.+
T Consensus 85 ~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEP-------------P~~v~F 151 (702)
T PRK14960 85 RFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEP-------------PEHVKF 151 (702)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcC-------------CCCcEE
Confidence 000110 000 0001 111 0111111 1134569999999999999999999999962 233355
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
|.+||.. ..+++++++|+. ++.+.. ++.+.+.+++
T Consensus 152 ILaTtd~------------~kIp~TIlSRCq-~feFkp--------------------------------Ls~eEI~k~L 186 (702)
T PRK14960 152 LFATTDP------------QKLPITVISRCL-QFTLRP--------------------------------LAVDEITKHL 186 (702)
T ss_pred EEEECCh------------HhhhHHHHHhhh-eeeccC--------------------------------CCHHHHHHHH
Confidence 5555533 135568899983 444422 3334444444
Q ss_pred HHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHH
Q 006051 536 YFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITA 604 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~A 604 (663)
...-..-...++++|...|... ..+++|...+++.-+-+. ....|+.+||...
T Consensus 187 ~~Il~kEgI~id~eAL~~IA~~------------S~GdLRdALnLLDQaIay----g~g~IT~edV~~l 239 (702)
T PRK14960 187 GAILEKEQIAADQDAIWQIAES------------AQGSLRDALSLTDQAIAY----GQGAVHHQDVKEM 239 (702)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHH
Confidence 3322222345677777777655 235677777776533332 3456777777654
No 104
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=1.5e-11 Score=118.17 Aligned_cols=213 Identities=22% Similarity=0.192 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHh
Q 006051 321 TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWML 400 (663)
Q Consensus 321 ~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 400 (663)
.+++|+.+.|..+ .......+.++..+||+||||||||+|++++|+....+|+....+... ...+-+ |.. .
T Consensus 166 eireavelplt~~---~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv----qkylge-gpr-m 236 (408)
T KOG0727|consen 166 EIREAVELPLTHA---DLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV----QKYLGE-GPR-M 236 (408)
T ss_pred HHHHHHhccchHH---HHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH----HHHhcc-CcH-H
Confidence 4556666655432 111112356678899999999999999999999877777654221110 000001 110 0
Q ss_pred hhhhhhhc---cCCeeecccccccC-----------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCC
Q 006051 401 EAGALVLA---DGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 401 ~~g~l~~a---~~gvl~iDEid~l~-----------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d 466 (663)
....+-+| .+.|+||||+|.+. .+.|..|++.+.+-. |.. -.+++-+|.|||+...+|
T Consensus 237 vrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmd------gfd--q~~nvkvimatnradtld 308 (408)
T KOG0727|consen 237 VRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMD------GFD--QTTNVKVIMATNRADTLD 308 (408)
T ss_pred HHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhcc------CcC--cccceEEEEecCcccccC
Confidence 11112222 46899999999873 345566777776521 221 245678999999985555
Q ss_pred CCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCC
Q 006051 467 PNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKP 544 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p 544 (663)
|+|++ |.|-.+.++ .++....+.+...|......+ +.-+|..|+. .
T Consensus 309 ------------pallrpgrldrkiefp-lpdrrqkrlvf~titskm~ls------------~~vdle~~v~------r- 356 (408)
T KOG0727|consen 309 ------------PALLRPGRLDRKIEFP-LPDRRQKRLVFSTITSKMNLS------------DEVDLEDLVA------R- 356 (408)
T ss_pred ------------HhhcCCccccccccCC-CCchhhhhhhHHhhhhcccCC------------cccCHHHHhc------C-
Confidence 47887 888888774 454444343433333221100 1112223321 1
Q ss_pred ccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 545 ILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 545 ~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
+-.++-..+.+++.-|-.+|--..|-.|...|.++|-.
T Consensus 357 ------------------------pdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay~ 394 (408)
T KOG0727|consen 357 ------------------------PDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAYK 394 (408)
T ss_pred ------------------------ccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHH
Confidence 22344556667777777788777788889999888764
No 105
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.29 E-value=3.2e-11 Score=140.33 Aligned_cols=201 Identities=18% Similarity=0.147 Sum_probs=121.0
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc----------CCceEEeCCC
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLG 381 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~----------~~~~~~~~~~ 381 (663)
-...++|++.....++-.|..+ ...|+||+||||||||.+++++++.. ...++....+
T Consensus 180 ~l~~~igr~~ei~~~~~~L~~~------------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~ 247 (731)
T TIGR02639 180 KIDPLIGREDELERTIQVLCRR------------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG 247 (731)
T ss_pred CCCcccCcHHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH
Confidence 3446789987666666555332 23689999999999999999999864 2334443322
Q ss_pred cccCCceEEEeecCchhHhhhhhhh----hccCCeeecccccccC---------hhhHHhHHHHHHhceeeeeccCceee
Q 006051 382 STSAGLTVTAVKDGGEWMLEAGALV----LADGGLCCIDEFDSMR---------EHDRATIHEAMEQQTISVAKAGLVTT 448 (663)
Q Consensus 382 ~~~~gl~~~~~~~~~~~~~~~g~l~----~a~~gvl~iDEid~l~---------~~~~~~L~~~me~~~i~i~k~g~~~~ 448 (663)
...+| .+..|+|......+. ...+.|+||||++.+. .+..+.|...|++|.+
T Consensus 248 ~l~a~-----~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i---------- 312 (731)
T TIGR02639 248 SLLAG-----TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKL---------- 312 (731)
T ss_pred HHhhh-----ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCe----------
Confidence 21111 111133433322222 1246799999999874 2345667777776655
Q ss_pred cCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCH
Q 006051 449 LSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPL 528 (663)
Q Consensus 449 ~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 528 (663)
.+|+|||+.. +...+...++|.+||. .+.+..+..++...+ .+.+...... ...-.++.
T Consensus 313 -----~~IgaTt~~e-------~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~i-l~~~~~~~e~-------~~~v~i~~ 371 (731)
T TIGR02639 313 -----RCIGSTTYEE-------YKNHFEKDRALSRRFQ-KIDVGEPSIEETVKI-LKGLKEKYEE-------FHHVKYSD 371 (731)
T ss_pred -----EEEEecCHHH-------HHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHH-HHHHHHHHHh-------ccCcccCH
Confidence 7999999841 1122456689999998 456644443343333 3333332211 11234778
Q ss_pred HHHHHHHHHHHccCCCc-cCHHHHHHHHHHHHH
Q 006051 529 AMLRRYIYFVKGYFKPI-LTKEAEKVISSYYQL 560 (663)
Q Consensus 529 ~~l~~~i~~~r~~~~p~-ls~ea~~~l~~~y~~ 560 (663)
+.+...+..+.+++... +++.|.++|......
T Consensus 372 ~al~~~~~ls~ryi~~r~~P~kai~lld~a~a~ 404 (731)
T TIGR02639 372 EALEAAVELSARYINDRFLPDKAIDVIDEAGAS 404 (731)
T ss_pred HHHHHHHHhhhcccccccCCHHHHHHHHHhhhh
Confidence 88888888887765543 577788887765543
No 106
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=3.4e-11 Score=141.14 Aligned_cols=277 Identities=16% Similarity=0.191 Sum_probs=156.9
Q ss_pred CCHHHHHHHHHHHHhh-----cCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCC
Q 006051 282 IPDDIIMQFKQFWSEF-----KDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDP 356 (663)
Q Consensus 282 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~p 356 (663)
++.+++..+-.-|... ..+.......+.+.+...|+||+.+..++.-++...... ....-++...+||+|||
T Consensus 529 v~~~~i~~vv~~~tgip~~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~g---l~~~~~p~~~~lf~Gp~ 605 (852)
T TIGR03345 529 VDAQAVAEVVADWTGIPVGRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAG---LEDPRKPLGVFLLVGPS 605 (852)
T ss_pred ecHHHHHHHHHHHHCCCchhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCC
Confidence 5566666655445321 111111123466788999999998888887766431000 01111222358999999
Q ss_pred CchHHHHHHHHHHhc---CCceEEeCCCcccCCceEEEeecC--chh-Hhhhhhh----hhccCCeeecccccccChhhH
Q 006051 357 GTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDG--GEW-MLEAGAL----VLADGGLCCIDEFDSMREHDR 426 (663)
Q Consensus 357 GtGKs~lar~ia~~~---~~~~~~~~~~~~~~gl~~~~~~~~--~~~-~~~~g~l----~~a~~gvl~iDEid~l~~~~~ 426 (663)
|||||.+|+++++.+ ...++...++.....-..+.+.+. |.. ..+.|.+ -....+|++||||+++.++.+
T Consensus 606 GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~ 685 (852)
T TIGR03345 606 GVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVL 685 (852)
T ss_pred CCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHH
Confidence 999999999999876 234555444332211111122211 100 0123333 234678999999999999999
Q ss_pred HhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCC-----CCC-----Cccc------cccCCChhhhhhhhhhh
Q 006051 427 ATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHY-----DPN-----LSLS------VNTTLSGPLLSRFDIVL 489 (663)
Q Consensus 427 ~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~-----d~~-----~~~~------~~~~l~~aLl~RFdli~ 489 (663)
+.|+++|++|.++.. .|....+. ++.||.|||-. +.| +.. ..+. ....+.|+|++|++ ++
T Consensus 686 ~~Llq~ld~g~l~d~-~Gr~vd~~-n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI 762 (852)
T TIGR03345 686 ELFYQVFDKGVMEDG-EGREIDFK-NTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VI 762 (852)
T ss_pred HHHHHHhhcceeecC-CCcEEecc-ccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EE
Confidence 999999999998654 34444443 68999999974 111 111 0000 11348899999998 56
Q ss_pred hhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHc-cCCCccCHHHHHHHHHHHHHHHhcccCC
Q 006051 490 VLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKG-YFKPILTKEAEKVISSYYQLQRRSATQN 568 (663)
Q Consensus 490 ~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~-~~~p~ls~ea~~~l~~~y~~~r~~~~~~ 568 (663)
.+.....++..+++...+-.. .++ +..+ .+...+++++.+.|.....
T Consensus 763 ~F~pLs~e~l~~Iv~~~L~~l--------------------~~r---l~~~~gi~l~i~d~a~~~La~~g~--------- 810 (852)
T TIGR03345 763 PYLPLDDDVLAAIVRLKLDRI--------------------ARR---LKENHGAELVYSEALVEHIVARCT--------- 810 (852)
T ss_pred EeCCCCHHHHHHHHHHHHHHH--------------------HHH---HHHhcCceEEECHHHHHHHHHHcC---------
Confidence 665555555544443322111 111 1112 3455789999988876521
Q ss_pred CccccHhHHHHHHHH--HHHHHhccCCCcc
Q 006051 569 AARTTVRMLESLIRL--AQAHARLMFRNEV 596 (663)
Q Consensus 569 ~~~~t~R~Le~lirl--a~a~A~l~~~~~V 596 (663)
....-.|.|..+|+. ....|..-+...+
T Consensus 811 ~~~~GAR~L~r~Ie~~i~~~la~~~l~~~~ 840 (852)
T TIGR03345 811 EVESGARNIDAILNQTLLPELSRQILERLA 840 (852)
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHHhChh
Confidence 112236667666643 2344544444443
No 107
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=1.6e-10 Score=123.78 Aligned_cols=140 Identities=21% Similarity=0.235 Sum_probs=82.9
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce-EE-eCCCc------ccCC
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-IT-TGLGS------TSAG 386 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~-~~-~~~~~------~~~g 386 (663)
+|+||+.+++.+.-++..| +-++.+||+||||+|||++|+.+++...... .. ..++. ...|
T Consensus 17 ~iiGq~~~~~~l~~~~~~~-----------~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~ 85 (363)
T PRK14961 17 DIIGQKHIVTAISNGLSLG-----------RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKG 85 (363)
T ss_pred hccChHHHHHHHHHHHHcC-----------CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Confidence 7899999999988888765 1224469999999999999999998654211 00 00000 0000
Q ss_pred --ceEEEeec---CchhHhh--hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 387 --LTVTAVKD---GGEWMLE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 387 --l~~~~~~~---~~~~~~~--~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
.....+.. .+..... ...+ ..+...|++|||+++++...+++|+..||+- +..+.+
T Consensus 86 ~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~-------------~~~~~f 152 (363)
T PRK14961 86 LCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PQHIKF 152 (363)
T ss_pred CCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEE
Confidence 01100000 0000000 0010 1124469999999999999999999999863 234455
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
|.+||.. ..+.+++.+|+ ..+.+
T Consensus 153 Il~t~~~------------~~l~~tI~SRc-~~~~~ 175 (363)
T PRK14961 153 ILATTDV------------EKIPKTILSRC-LQFKL 175 (363)
T ss_pred EEEcCCh------------HhhhHHHHhhc-eEEeC
Confidence 5555432 14667899998 34444
No 108
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.29 E-value=9.7e-12 Score=145.11 Aligned_cols=160 Identities=22% Similarity=0.248 Sum_probs=96.8
Q ss_pred cccCchhHHHHHHHHHHhCCceeec-CCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.+|.|++.+|+.+.-.+..+..... ..+...+.+.++||+||||||||++|+++|..+..+++....... ....+
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l----~~~~v 528 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI----LSKWV 528 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH----hhccc
Confidence 4578999999888776654322211 112234556789999999999999999999998887776432211 10011
Q ss_pred ecCchhHhhhhhh---hhccCCeeecccccccChh------------hHHhHHHHHHhceeeeeccCceeecCCcEEEEE
Q 006051 393 KDGGEWMLEAGAL---VLADGGLCCIDEFDSMREH------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (663)
Q Consensus 393 ~~~~~~~~~~g~l---~~a~~gvl~iDEid~l~~~------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iia 457 (663)
+..+..+. ..+ ..+.++|+||||+|.+.+. ..+.|+..|+. .. -..++.|||
T Consensus 529 -Gese~~i~-~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg---------~~--~~~~v~vI~ 595 (733)
T TIGR01243 529 -GESEKAIR-EIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDG---------IQ--ELSNVVVIA 595 (733)
T ss_pred -CcHHHHHH-HHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhc---------cc--CCCCEEEEE
Confidence 11111110 111 1235689999999987422 12334444442 11 134679999
Q ss_pred eeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHH
Q 006051 458 ATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVV 503 (663)
Q Consensus 458 atN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i 503 (663)
|||.+.. +.+++++ |||.++.+ ..|+.+....|
T Consensus 596 aTn~~~~------------ld~allRpgRfd~~i~v-~~Pd~~~R~~i 630 (733)
T TIGR01243 596 ATNRPDI------------LDPALLRPGRFDRLILV-PPPDEEARKEI 630 (733)
T ss_pred eCCChhh------------CCHhhcCCCccceEEEe-CCcCHHHHHHH
Confidence 9998744 4458886 99999888 45554444433
No 109
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.28 E-value=2.1e-11 Score=145.55 Aligned_cols=201 Identities=13% Similarity=0.121 Sum_probs=118.8
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCc----eEE--------------Ee-ecC----------
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGL----TVT--------------AV-KDG---------- 395 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl----~~~--------------~~-~~~---------- 395 (663)
+.+.+|||+||||||||.|||++|..+..+++.........+. ... .+ ++-
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 5567899999999999999999999999988876432211100 000 00 000
Q ss_pred --chhHhhhhh------hhhc---cCCeeecccccccChhh-----HHhHHHHHHhceeeeeccCceeecCCcEEEEEee
Q 006051 396 --GEWMLEAGA------LVLA---DGGLCCIDEFDSMREHD-----RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (663)
Q Consensus 396 --~~~~~~~g~------l~~a---~~gvl~iDEid~l~~~~-----~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat 459 (663)
+......|+ +.+| .++|+||||||.+...+ .+.|+..|+... ...-...+.|||||
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~--------~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDC--------ERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhcccc--------ccCCCCCEEEEEeC
Confidence 000001111 2233 57999999999997643 234444444211 00113467899999
Q ss_pred CCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHH--HhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 460 NPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSH--ILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 460 N~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~--il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
|.++..| |||++ |||..+.+.-+.-+...+++... ....+.. ....+ +.
T Consensus 1780 NRPD~LD------------PALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~---------~~~vd---l~--- 1832 (2281)
T CHL00206 1780 HIPQKVD------------PALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLE---------KKMFH---TN--- 1832 (2281)
T ss_pred CCcccCC------------HhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCC---------ccccc---HH---
Confidence 9986555 59998 99999988544444444433211 1011110 00000 00
Q ss_pred HHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 536 YFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
.++. . ....|.+.|.+|+.-|...|--+.+..|+.+|+..|+.-.
T Consensus 1833 -----------------~LA~------~-----T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1833 -----------------GFGS------I-----TMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred -----------------HHHH------h-----CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 1110 0 2345678888899888888888888899999999988655
No 110
>PLN03025 replication factor C subunit; Provisional
Probab=99.28 E-value=2.6e-10 Score=120.18 Aligned_cols=138 Identities=20% Similarity=0.190 Sum_probs=82.5
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeec
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD 394 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~ 394 (663)
++.|++.+...+.-.+.++ ...|+||+||||||||++|+++++.+...-+... ...+..+..++
T Consensus 14 ~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~----~~eln~sd~~~ 77 (319)
T PLN03025 14 DIVGNEDAVSRLQVIARDG------------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEA----VLELNASDDRG 77 (319)
T ss_pred HhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccc----eeeeccccccc
Confidence 6789998888776554432 1258999999999999999999986522111000 00000010111
Q ss_pred CchhH--hhh---h--hhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCC
Q 006051 395 GGEWM--LEA---G--ALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDP 467 (663)
Q Consensus 395 ~~~~~--~~~---g--~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~ 467 (663)
..... .+. . .+......|++|||+|.|....+++|++.||.- +..+.++.++|...
T Consensus 78 ~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~-------------~~~t~~il~~n~~~---- 140 (319)
T PLN03025 78 IDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIY-------------SNTTRFALACNTSS---- 140 (319)
T ss_pred HHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcc-------------cCCceEEEEeCCcc----
Confidence 00000 000 0 001123569999999999999999999999842 22345777787641
Q ss_pred CCccccccCCChhhhhhhhhhhhhcCC
Q 006051 468 NLSLSVNTTLSGPLLSRFDIVLVLLDT 494 (663)
Q Consensus 468 ~~~~~~~~~l~~aLl~RFdli~~l~d~ 494 (663)
.+.++|.+|+. ++.+...
T Consensus 141 --------~i~~~L~SRc~-~i~f~~l 158 (319)
T PLN03025 141 --------KIIEPIQSRCA-IVRFSRL 158 (319)
T ss_pred --------ccchhHHHhhh-cccCCCC
Confidence 45578999984 4445333
No 111
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.28 E-value=3.5e-10 Score=126.52 Aligned_cols=209 Identities=21% Similarity=0.182 Sum_probs=125.9
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEe--CCCc------ccCC
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGS------TSAG 386 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~--~~~~------~~~g 386 (663)
+|+|++.+++.|..++..| |-...+||+||+|+|||++|+.+++.+...-... .++. ...|
T Consensus 17 dIIGQe~vv~~L~~ai~~~-----------rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g 85 (709)
T PRK08691 17 DLVGQEHVVKALQNALDEG-----------RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAG 85 (709)
T ss_pred HHcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhcc
Confidence 7899999999999888765 2235689999999999999999998653211000 0000 0000
Q ss_pred --ceEEEee---cCch----hHhhhh-hh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 387 --LTVTAVK---DGGE----WMLEAG-AL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 387 --l~~~~~~---~~~~----~~~~~g-~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
.....+. ..+. ..++.. .. ..+...|++|||+++|+....+.|+..||+. +..+.+
T Consensus 86 ~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEP-------------p~~v~f 152 (709)
T PRK08691 86 RYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKF 152 (709)
T ss_pred CccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhC-------------CCCcEE
Confidence 0000010 0111 011100 00 1245679999999999999999999999962 234466
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
|.+||.. ..+.+++++|+ ..|.+.. ++.+.+..++
T Consensus 153 ILaTtd~------------~kL~~TIrSRC-~~f~f~~--------------------------------Ls~eeI~~~L 187 (709)
T PRK08691 153 ILATTDP------------HKVPVTVLSRC-LQFVLRN--------------------------------MTAQQVADHL 187 (709)
T ss_pred EEEeCCc------------cccchHHHHHH-hhhhcCC--------------------------------CCHHHHHHHH
Confidence 6666543 24567899998 3444422 2333444444
Q ss_pred HHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 536 YFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
...-..-...+++++...|.++ ..+++|.+.+++.-+.+. ....|+.++|...+...
T Consensus 188 ~~Il~kEgi~id~eAL~~Ia~~------------A~GslRdAlnLLDqaia~----g~g~It~e~V~~lLG~~ 244 (709)
T PRK08691 188 AHVLDSEKIAYEPPALQLLGRA------------AAGSMRDALSLLDQAIAL----GSGKVAENDVRQMIGAV 244 (709)
T ss_pred HHHHHHcCCCcCHHHHHHHHHH------------hCCCHHHHHHHHHHHHHh----cCCCcCHHHHHHHHccc
Confidence 3222222345778888777765 235688888888655443 24578888888766544
No 112
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.28 E-value=1.1e-10 Score=129.08 Aligned_cols=142 Identities=21% Similarity=0.205 Sum_probs=87.0
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce--EEeC-----C-------
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV--ITTG-----L------- 380 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~--~~~~-----~------- 380 (663)
+|+||+.+++.|.-++..| |-.+-+||+||+|+|||++++.+++.+...- -..+ +
T Consensus 17 dVIGQe~vv~~L~~al~~g-----------RLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~ 85 (700)
T PRK12323 17 TLVGQEHVVRALTHALEQQ-----------RLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACT 85 (700)
T ss_pred HHcCcHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHH
Confidence 7899999999999888765 1223469999999999999999998654310 0000 0
Q ss_pred ----CcccCCceEEEeecCc--hhHhhhhhhh----hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecC
Q 006051 381 ----GSTSAGLTVTAVKDGG--EWMLEAGALV----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLS 450 (663)
Q Consensus 381 ----~~~~~gl~~~~~~~~~--~~~~~~g~l~----~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~ 450 (663)
+....-+........+ +...-...+. .....|++|||+++|+....++|+..||+- +
T Consensus 86 ~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEP-------------P 152 (700)
T PRK12323 86 EIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEP-------------P 152 (700)
T ss_pred HHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccC-------------C
Confidence 0000001100000001 0000000111 123469999999999999999999999972 3
Q ss_pred CcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcC
Q 006051 451 TRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLD 493 (663)
Q Consensus 451 ~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d 493 (663)
.++.||.+||.. ..|.++++||+ ..|.+..
T Consensus 153 ~~v~FILaTtep------------~kLlpTIrSRC-q~f~f~~ 182 (700)
T PRK12323 153 EHVKFILATTDP------------QKIPVTVLSRC-LQFNLKQ 182 (700)
T ss_pred CCceEEEEeCCh------------HhhhhHHHHHH-HhcccCC
Confidence 445666666643 25668999999 4555533
No 113
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.6e-11 Score=134.88 Aligned_cols=153 Identities=24% Similarity=0.270 Sum_probs=96.6
Q ss_pred cccccCchhHHHHHHHHHHhCCc--eeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcc---cCC
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGV--QHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST---SAG 386 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~--~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~---~~g 386 (663)
-+-++.|.+.+|+.+...+---. .+...-|. +-+.++||+||||||||.|||++|..++.|++....+.. ..|
T Consensus 148 ~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGa--kiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVG 225 (596)
T COG0465 148 TFADVAGVDEAKEELSELVDFLKNPKKYQALGA--KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVG 225 (596)
T ss_pred ChhhhcCcHHHHHHHHHHHHHHhCchhhHhccc--ccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcC
Confidence 36678899999988765543311 11112233 446799999999999999999999999999887532211 122
Q ss_pred ceEEEeecCchhHhhhhhhhhccCCeeecccccccChhh--------------HHhHHHHHHhceeeeeccCceeecCCc
Q 006051 387 LTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHD--------------RATIHEAMEQQTISVAKAGLVTTLSTR 452 (663)
Q Consensus 387 l~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~--------------~~~L~~~me~~~i~i~k~g~~~~~~~~ 452 (663)
.-++.+++ .+.++. ...++|+||||+|...... .+.|+--|+ |.. -+..
T Consensus 226 vGAsRVRd---LF~qAk---k~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmD---------GF~--~~~g 288 (596)
T COG0465 226 VGASRVRD---LFEQAK---KNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMD---------GFG--GNEG 288 (596)
T ss_pred CCcHHHHH---HHHHhh---ccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhc---------cCC--CCCc
Confidence 22222221 111111 1246899999999985432 233333333 211 2456
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCC
Q 006051 453 TIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKN 496 (663)
Q Consensus 453 ~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~ 496 (663)
+.++||||++.-.| +||++ |||..+.+ +.|+
T Consensus 289 viviaaTNRpdVlD------------~ALlRpgRFDRqI~V-~~PD 321 (596)
T COG0465 289 VIVIAATNRPDVLD------------PALLRPGRFDRQILV-ELPD 321 (596)
T ss_pred eEEEecCCCcccch------------HhhcCCCCcceeeec-CCcc
Confidence 78999999985555 48888 99999887 5554
No 114
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.26 E-value=1.7e-12 Score=123.19 Aligned_cols=114 Identities=22% Similarity=0.280 Sum_probs=77.6
Q ss_pred cccccccccCCCchHHHHHHHHHHhcCC----ceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeeccccccc
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSM 421 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~~----~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l 421 (663)
+-.++||+||+|+|||.+++++++...- ++...+++....+-....... ......+|....+.+||+|+|||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~-~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVS-KLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCH-HHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhh-hhhhcccceeeccchhhhhhHHHhhc
Confidence 4478999999999999999999998773 566555443322000000000 11111234444567789999999999
Q ss_pred Ch-----------hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 422 RE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 422 ~~-----------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
.+ ..++.|+++||.|+++.. .|.... -.++.+|+|+|-.
T Consensus 81 ~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~-~g~~vd-~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 81 HPSNSGGADVSGEGVQNSLLQLLEGGTLTDS-YGRTVD-TSNIIFIMTSNFG 130 (171)
T ss_dssp SHTTTTCSHHHHHHHHHHHHHHHHHSEEEET-TCCEEE-GTTEEEEEEESSS
T ss_pred cccccccchhhHHHHHHHHHHHhcccceecc-cceEEE-eCCceEEEecccc
Confidence 99 999999999999998743 332222 3578999999975
No 115
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=6.8e-11 Score=139.04 Aligned_cols=266 Identities=14% Similarity=0.154 Sum_probs=148.7
Q ss_pred CCCHHHHHHHHHHHHhh-----cCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccC
Q 006051 281 DIPDDIIMQFKQFWSEF-----KDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGD 355 (663)
Q Consensus 281 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~ 355 (663)
.++++++..+-.-|... ..+.......+-+.+...|+|++.+...+.-++...... ....-++..++||+||
T Consensus 530 ~v~~~~i~~vv~~~tgip~~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~Lf~Gp 606 (857)
T PRK10865 530 KVTDAEIAEVLARWTGIPVSRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAG---LSDPNRPIGSFLFLGP 606 (857)
T ss_pred ccCHHHHHHHHHHHHCCCchhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEECC
Confidence 36677776666656421 111111224567788889999998776666555321000 0011122247899999
Q ss_pred CCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC--ch-hHhhhh----hhhhccCCeeecccccccChhh
Q 006051 356 PGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG--GE-WMLEAG----ALVLADGGLCCIDEFDSMREHD 425 (663)
Q Consensus 356 pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~--~~-~~~~~g----~l~~a~~gvl~iDEid~l~~~~ 425 (663)
||||||.+|+++++.+. .+++..++.........+.+.+. |. ...+.| ++-....+|++|||+++++++.
T Consensus 607 ~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v 686 (857)
T PRK10865 607 TGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDV 686 (857)
T ss_pred CCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHH
Confidence 99999999999998753 34544433221111100000100 00 000112 2223356899999999999999
Q ss_pred HHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-C----CCCCCC-----c---cccccCCChhhhhhhhhhhhhc
Q 006051 426 RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-G----HYDPNL-----S---LSVNTTLSGPLLSRFDIVLVLL 492 (663)
Q Consensus 426 ~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g----~~d~~~-----~---~~~~~~l~~aLl~RFdli~~l~ 492 (663)
++.|+++|++|.++.. .|....+ .++.||+|||.. . .|.... . ......+.|+|++|+|.++.+.
T Consensus 687 ~~~Ll~ile~g~l~d~-~gr~vd~-rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~ 764 (857)
T PRK10865 687 FNILLQVLDDGRLTDG-QGRTVDF-RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFH 764 (857)
T ss_pred HHHHHHHHhhCceecC-CceEEee-cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecC
Confidence 9999999999987532 2333222 245789999973 1 121100 0 1123457899999999888886
Q ss_pred CCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccc
Q 006051 493 DTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAART 572 (663)
Q Consensus 493 d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~ 572 (663)
....++...+ .++.+.... . ...+..+...+++++.+.|..+-- ....
T Consensus 765 PL~~edl~~I-v~~~L~~l~-------------------~---rl~~~gi~l~is~~al~~L~~~gy---------~~~~ 812 (857)
T PRK10865 765 PLGEQHIASI-AQIQLQRLY-------------------K---RLEERGYEIHISDEALKLLSENGY---------DPVY 812 (857)
T ss_pred CCCHHHHHHH-HHHHHHHHH-------------------H---HHHhCCCcCcCCHHHHHHHHHcCC---------CccC
Confidence 6555443333 333222110 0 111223455789999888876510 1123
Q ss_pred cHhHHHHHHHH
Q 006051 573 TVRMLESLIRL 583 (663)
Q Consensus 573 t~R~Le~lirl 583 (663)
..|.|..+|+-
T Consensus 813 GARpL~r~I~~ 823 (857)
T PRK10865 813 GARPLKRAIQQ 823 (857)
T ss_pred ChHHHHHHHHH
Confidence 46777666653
No 116
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.24 E-value=2.1e-10 Score=125.20 Aligned_cols=208 Identities=16% Similarity=0.143 Sum_probs=123.0
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc----eEEeCC--------C
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS----VITTGL--------G 381 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~----~~~~~~--------~ 381 (663)
.+++||+.+++.+.-++..| |-+.++||+||||+|||++|+.+|+..... .-.+|. .
T Consensus 13 ~dliGQe~vv~~L~~a~~~~-----------ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLN-----------KIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 37899999999888777664 234679999999999999999999853210 000000 0
Q ss_pred cccCCc---eEEEeecCchh--Hhh-hhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 382 STSAGL---TVTAVKDGGEW--MLE-AGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 382 ~~~~gl---~~~~~~~~~~~--~~~-~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
.....+ .++...+..+. .++ .... ..+...|++|||+++++.+.+++|+..||+- +..+.
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEeP-------------p~~v~ 148 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEP-------------APHVK 148 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCC-------------CCCeE
Confidence 001111 00000000010 011 1111 1245679999999999999999999999972 23445
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHH
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRY 534 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~ 534 (663)
+|.+|+.. ..+++++++|+-. +.+.. ++.+.+..+
T Consensus 149 fIlatte~------------~Kl~~tI~SRc~~-~~f~~--------------------------------l~~~el~~~ 183 (491)
T PRK14964 149 FILATTEV------------KKIPVTIISRCQR-FDLQK--------------------------------IPTDKLVEH 183 (491)
T ss_pred EEEEeCCh------------HHHHHHHHHhhee-eeccc--------------------------------ccHHHHHHH
Confidence 55555532 1466789999843 33322 233334444
Q ss_pred HHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 535 IYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 535 i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
+...-..-...++++|.++|.+. ..+++|.+.+++.-+.+++. ..|+.+||...+.
T Consensus 184 L~~ia~~Egi~i~~eAL~lIa~~------------s~GslR~alslLdqli~y~~----~~It~e~V~~llg 239 (491)
T PRK14964 184 LVDIAKKENIEHDEESLKLIAEN------------SSGSMRNALFLLEQAAIYSN----NKISEKSVRDLLG 239 (491)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHHhcC----CCCCHHHHHHHHc
Confidence 43322222446788888777765 23567877777765555443 4788888877543
No 117
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.24 E-value=2.5e-10 Score=115.34 Aligned_cols=151 Identities=18% Similarity=0.130 Sum_probs=109.6
Q ss_pred CCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhhhh
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFDIV 488 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFdli 488 (663)
+||+||||.++++-+....|+++||+--- | .+|.|||+. ....- ..+..-..+|..|++|. +|
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse~a-----------P---Iii~AtNRG~~kiRG-Td~~sPhGIP~DlLDRl-lI 355 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESELA-----------P---IIILATNRGMTKIRG-TDIESPHGIPLDLLDRL-LI 355 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcccC-----------c---EEEEEcCCceeeecc-cCCcCCCCCCHhhhhhe-eE
Confidence 59999999999999999999999997431 1 688899983 11100 11222356888999998 44
Q ss_pred hhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCC
Q 006051 489 LVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQN 568 (663)
Q Consensus 489 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~ 568 (663)
+....++. +.++..|..--+.-.-.++++|.++|...
T Consensus 356 I~t~py~~--------------------------------~EireIi~iRa~ee~i~l~~~Ale~L~~i----------- 392 (450)
T COG1224 356 ISTRPYSR--------------------------------EEIREIIRIRAKEEDIELSDDALEYLTDI----------- 392 (450)
T ss_pred EecCCCCH--------------------------------HHHHHHHHHhhhhhccccCHHHHHHHHhh-----------
Confidence 44434443 44444442221223456899999999877
Q ss_pred CccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhhhhhh
Q 006051 569 AARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVD 619 (663)
Q Consensus 569 ~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~~~ 619 (663)
+...|+|---.|+.-|.-.|+.+.+..|..+||..|-.+|-.+..+...+.
T Consensus 393 g~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~lF~D~krSv~~v~ 443 (450)
T COG1224 393 GEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKELFLDVKRSVEYVE 443 (450)
T ss_pred chhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHHHhhHHHHHHHHH
Confidence 445678988899999999999999999999999999999988887765443
No 118
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.23 E-value=9.5e-11 Score=123.58 Aligned_cols=146 Identities=18% Similarity=0.267 Sum_probs=91.0
Q ss_pred cCCeeecccccccCh------------hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccC
Q 006051 409 DGGLCCIDEFDSMRE------------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTT 476 (663)
Q Consensus 409 ~~gvl~iDEid~l~~------------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~ 476 (663)
+.||+||||||++.. ..|..|+..||--.+++ +.+... ..++.|||+ |.|...+ ...
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~--T~~ILFI~~----GAF~~~k----p~D 317 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVK--TDHILFIAS----GAFHVSK----PSD 317 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEE--CCceeEEec----CCcCCCC----hhh
Confidence 889999999999842 26777888888766654 333221 133445543 3443221 134
Q ss_pred CChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH-ccCCCccCHHHHHHHH
Q 006051 477 LSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVK-GYFKPILTKEAEKVIS 555 (663)
Q Consensus 477 l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r-~~~~p~ls~ea~~~l~ 555 (663)
|-|.|.-||.+++.+.....++.-++ |... ....++.|.+..+ ..+.-.+|++|.+.|.
T Consensus 318 lIPEl~GR~Pi~v~L~~L~~~dL~~I-----LteP---------------~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA 377 (443)
T PRK05201 318 LIPELQGRFPIRVELDALTEEDFVRI-----LTEP---------------KASLIKQYQALLATEGVTLEFTDDAIRRIA 377 (443)
T ss_pred ccHHHhCccceEEECCCCCHHHHHHH-----hcCC---------------hhHHHHHHHHHHhhcCcEEEEcHHHHHHHH
Confidence 67999999999999866554444333 3211 1357788876544 3466679999999999
Q ss_pred HHHHHHHhcccCCCccccHhHHHHHHHHHHHHHh
Q 006051 556 SYYQLQRRSATQNAARTTVRMLESLIRLAQAHAR 589 (663)
Q Consensus 556 ~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~ 589 (663)
+........ ...+-.|.|.+++.-.-.-+.
T Consensus 378 ~~A~~~N~~----~~~iGAR~LrtI~E~~L~d~~ 407 (443)
T PRK05201 378 EIAYQVNEK----TENIGARRLHTVMEKLLEDIS 407 (443)
T ss_pred HHHHHhccc----ccccchhhHHHHHHHHHHHHh
Confidence 875543111 123448888888875444443
No 119
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.8e-11 Score=121.76 Aligned_cols=155 Identities=21% Similarity=0.219 Sum_probs=100.1
Q ss_pred HHhhccccccCchhHHHHHHHHHHhCCceeecC---CCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCC-c
Q 006051 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDA---SGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG-S 382 (663)
Q Consensus 307 ~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~---~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~-~ 382 (663)
.|.+.+-.-+.||+.+|+.+..+...--.+... +..---+..||||+||+|+|||.||+.+|+++..||-..... -
T Consensus 54 eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtL 133 (408)
T COG1219 54 EIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTL 133 (408)
T ss_pred HHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccch
Confidence 345555566899999999888776543222111 111122347999999999999999999999999988664432 2
Q ss_pred ccCCceEEEeecCchhHhh--hhhhhhccCCeeecccccccC--------------hhhHHhHHHHHHhceeeeeccCce
Q 006051 383 TSAGLTVTAVKDGGEWMLE--AGALVLADGGLCCIDEFDSMR--------------EHDRATIHEAMEQQTISVAKAGLV 446 (663)
Q Consensus 383 ~~~gl~~~~~~~~~~~~~~--~g~l~~a~~gvl~iDEid~l~--------------~~~~~~L~~~me~~~i~i~k~g~~ 446 (663)
+.+|.....+...=..-+. -..+..|..||++|||||++. +..|.+|+..||--..++...|..
T Consensus 134 TEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGR 213 (408)
T COG1219 134 TEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGR 213 (408)
T ss_pred hhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCC
Confidence 3344332111110000111 123456889999999999984 346889999999777777766655
Q ss_pred eecCCcEEEEEeeCC
Q 006051 447 TTLSTRTIIFGATNP 461 (663)
Q Consensus 447 ~~~~~~~~iiaatN~ 461 (663)
..-+-.+.-+-|+|-
T Consensus 214 KHP~Qe~iqvDT~NI 228 (408)
T COG1219 214 KHPQQEFIQVDTSNI 228 (408)
T ss_pred CCCccceEEEcccce
Confidence 544556666677775
No 120
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.22 E-value=1.3e-11 Score=135.03 Aligned_cols=165 Identities=18% Similarity=0.168 Sum_probs=88.2
Q ss_pred ccCchhHHHHHHHHHHhCCcee-ecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCC------CcccCCc
Q 006051 315 QVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL------GSTSAGL 387 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~------~~~~~gl 387 (663)
+|.|++..++.+.-++.-.... .......++++.++||+||||||||++++++++.+...++.... ......+
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eL 262 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPEL 262 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhh
Confidence 5677776666555443321111 00011224556789999999999999999999987654332000 0000001
Q ss_pred eEEEeecCchhHhhhhhh-----hhc---cCCeeecccccccChhh------------HHhHHHHHHhceeeeeccCcee
Q 006051 388 TVTAVKDGGEWMLEAGAL-----VLA---DGGLCCIDEFDSMREHD------------RATIHEAMEQQTISVAKAGLVT 447 (663)
Q Consensus 388 ~~~~~~~~~~~~~~~g~l-----~~a---~~gvl~iDEid~l~~~~------------~~~L~~~me~~~i~i~k~g~~~ 447 (663)
.... .|+.......+ ..+ ...|+||||+|.+-... .+.|+..|+. ..
T Consensus 263 l~ky---vGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg---------l~- 329 (512)
T TIGR03689 263 LNKY---VGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG---------VE- 329 (512)
T ss_pred cccc---cchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc---------cc-
Confidence 0000 01111010111 111 36799999999873211 1233443432 11
Q ss_pred ecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHH
Q 006051 448 TLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSH 506 (663)
Q Consensus 448 ~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~ 506 (663)
-..++.||+|||+... |.++|++ |||..+.+ +.|+.+....|.++
T Consensus 330 -~~~~ViVI~ATN~~d~------------LDpALlRpGRfD~~I~~-~~Pd~e~r~~Il~~ 376 (512)
T TIGR03689 330 -SLDNVIVIGASNREDM------------IDPAILRPGRLDVKIRI-ERPDAEAAADIFSK 376 (512)
T ss_pred -cCCceEEEeccCChhh------------CCHhhcCccccceEEEe-CCCCHHHHHHHHHH
Confidence 1245789999999744 4559998 99999888 44554444444333
No 121
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.22 E-value=3.2e-10 Score=125.56 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=116.2
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce-E-EeCCCc----------
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-I-TTGLGS---------- 382 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~-~-~~~~~~---------- 382 (663)
+|.||+.++..+.-++..| |....+||+||||+|||++|+.+++...... . ...++.
T Consensus 17 diiGq~~~v~~L~~~i~~~-----------rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~ 85 (546)
T PRK14957 17 EVAGQQHALNSLVHALETQ-----------KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN 85 (546)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC
Confidence 7889999999988888664 2224488999999999999999998653210 0 000000
Q ss_pred ccCCceE-EEeecCc--h--hHhh-hhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 383 TSAGLTV-TAVKDGG--E--WMLE-AGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 383 ~~~gl~~-~~~~~~~--~--~~~~-~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
....+.. ......| + ..++ .... ..++..|++|||+++|+...+++|+..||+. +..+.+
T Consensus 86 ~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEep-------------p~~v~f 152 (546)
T PRK14957 86 SFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEP-------------PEYVKF 152 (546)
T ss_pred CCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcC-------------CCCceE
Confidence 0011100 0000001 0 0011 0001 2245679999999999999999999999973 233345
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
|.+|+.. ..+.++++||+ .++.+... +.+.+..++
T Consensus 153 IL~Ttd~------------~kil~tI~SRc-~~~~f~~L--------------------------------s~~eI~~~L 187 (546)
T PRK14957 153 ILATTDY------------HKIPVTILSRC-IQLHLKHI--------------------------------SQADIKDQL 187 (546)
T ss_pred EEEECCh------------hhhhhhHHHhe-eeEEeCCC--------------------------------CHHHHHHHH
Confidence 5555422 24556799999 44544333 333333333
Q ss_pred HHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 536 YFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
...-......++++|.+.|..+ ..+++|.+.+++..+.+... +.++.+|+..++
T Consensus 188 ~~il~~egi~~e~~Al~~Ia~~------------s~GdlR~alnlLek~i~~~~----~~It~~~V~~~l 241 (546)
T PRK14957 188 KIILAKENINSDEQSLEYIAYH------------AKGSLRDALSLLDQAISFCG----GELKQAQIKQML 241 (546)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHHhcc----CCCCHHHHHHHH
Confidence 3221122345677777776655 23456666666654433321 456776666543
No 122
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.21 E-value=5.4e-10 Score=123.03 Aligned_cols=211 Identities=15% Similarity=0.142 Sum_probs=125.1
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceE--------EeCCCc---
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI--------TTGLGS--- 382 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~--------~~~~~~--- 382 (663)
.+++||+.++..+..++..| |-..++||+||||||||++|+.+++....... .++.-.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~-----------ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~ 89 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILND-----------RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCI 89 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHH
Confidence 37899999999888877665 22368999999999999999999987643211 001000
Q ss_pred -ccCC--ceEEEee---cCc-----hhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecC
Q 006051 383 -TSAG--LTVTAVK---DGG-----EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLS 450 (663)
Q Consensus 383 -~~~g--l~~~~~~---~~~-----~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~ 450 (663)
...+ .....+. ..+ +....+... ..+...|++|||++.++...+++|+..||+. +
T Consensus 90 ~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEep-------------p 156 (507)
T PRK06645 90 SFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEP-------------P 156 (507)
T ss_pred HHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhc-------------C
Confidence 0000 0000000 001 000000000 1246789999999999999999999999863 3
Q ss_pred CcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHH
Q 006051 451 TRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAM 530 (663)
Q Consensus 451 ~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~ 530 (663)
..+.+|.+|+.. ..+++++.+|+. .+.+.. ++.+.
T Consensus 157 ~~~vfI~aTte~------------~kI~~tI~SRc~-~~ef~~--------------------------------ls~~e 191 (507)
T PRK06645 157 PHIIFIFATTEV------------QKIPATIISRCQ-RYDLRR--------------------------------LSFEE 191 (507)
T ss_pred CCEEEEEEeCCh------------HHhhHHHHhcce-EEEccC--------------------------------CCHHH
Confidence 455666666543 146678999883 343422 23334
Q ss_pred HHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 531 LRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 531 l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
+..++...-+.-...++++|.++|... ..+++|.+.+++.-+.+++.-. ...|+.+||...+.
T Consensus 192 l~~~L~~i~~~egi~ie~eAL~~Ia~~------------s~GslR~al~~Ldkai~~~~~~-~~~It~~~V~~llg 254 (507)
T PRK06645 192 IFKLLEYITKQENLKTDIEALRIIAYK------------SEGSARDAVSILDQAASMSAKS-DNIISPQVINQMLG 254 (507)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHHhhccC-CCCcCHHHHHHHHC
Confidence 444443222222445777877776654 2356888877777655554311 23688888876543
No 123
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=4.3e-10 Score=126.33 Aligned_cols=144 Identities=23% Similarity=0.199 Sum_probs=87.1
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccc-cccccCCCchHHHHHHHHHHhcCCceE--EeCCCc--------
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESH-LLLVGDPGTGKSQFLKFAAKLSNRSVI--TTGLGS-------- 382 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~-iLL~G~pGtGKs~lar~ia~~~~~~~~--~~~~~~-------- 382 (663)
.+|+||+.++..|.-++..| |- .| +||+||+|+|||++|+.+++.+..... ...++.
T Consensus 16 ~divGQe~vv~~L~~~l~~~-----------rl-~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLG-----------RL-HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----------CC-CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 37899999999998888765 11 34 599999999999999999986543210 000100
Q ss_pred --ccCCc-eEEEeecCchhHhh--hhhhh----hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcE
Q 006051 383 --TSAGL-TVTAVKDGGEWMLE--AGALV----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRT 453 (663)
Q Consensus 383 --~~~gl-~~~~~~~~~~~~~~--~g~l~----~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~ 453 (663)
....+ ........+....+ ...+. .....|++|||+++|+...+++|+..||+- +..+
T Consensus 84 ~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEP-------------p~~v 150 (647)
T PRK07994 84 QGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHV 150 (647)
T ss_pred cCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcC-------------CCCe
Confidence 00001 00000000100000 01111 123459999999999999999999999973 2344
Q ss_pred EEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCC
Q 006051 454 IIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTK 495 (663)
Q Consensus 454 ~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~ 495 (663)
.+|.+|+.. ..++++++||+ ..|.+...+
T Consensus 151 ~FIL~Tt~~------------~kLl~TI~SRC-~~~~f~~Ls 179 (647)
T PRK07994 151 KFLLATTDP------------QKLPVTILSRC-LQFHLKALD 179 (647)
T ss_pred EEEEecCCc------------cccchHHHhhh-eEeeCCCCC
Confidence 555555533 25777899997 555553433
No 124
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.20 E-value=7.7e-10 Score=122.62 Aligned_cols=140 Identities=16% Similarity=0.182 Sum_probs=85.5
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC-ceEE-eCCCccc------C-
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-SVIT-TGLGSTS------A- 385 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~-~~~~-~~~~~~~------~- 385 (663)
+++||+.++..+.-++..| +..+.+||+||||+|||++|+.+|+.+.. .... ..++.-. .
T Consensus 17 dIIGQe~iv~~L~~aI~~~-----------rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~ 85 (605)
T PRK05896 17 QIIGQELIKKILVNAILNN-----------KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTN 85 (605)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcC
Confidence 7889999999988888664 22355999999999999999999986531 1000 0011000 0
Q ss_pred -CceEEEeec---C--c---hhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 386 -GLTVTAVKD---G--G---EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 386 -gl~~~~~~~---~--~---~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
......+.. . + +..-..... ..++.+|++|||++.|+...+++|+..||+. +..+.+
T Consensus 86 ~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEP-------------p~~tvf 152 (605)
T PRK05896 86 QSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEP-------------PKHVVF 152 (605)
T ss_pred CCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhC-------------CCcEEE
Confidence 000000100 0 1 100001111 1246789999999999999999999999973 234455
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
|.+|+.. ..+.+++++|+. .+.+
T Consensus 153 IL~Tt~~------------~KLl~TI~SRcq-~ieF 175 (605)
T PRK05896 153 IFATTEF------------QKIPLTIISRCQ-RYNF 175 (605)
T ss_pred EEECCCh------------HhhhHHHHhhhh-hccc
Confidence 5555432 256678999985 3444
No 125
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.2e-10 Score=126.60 Aligned_cols=197 Identities=19% Similarity=0.152 Sum_probs=117.0
Q ss_pred cccCchhHHHHHHHHHHhCCceeec-CCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.+|.|+..+|.++.-.+..+.+-.. ....++|-..+|||+||||||||.||.+++..++-.++...... +....+
T Consensus 667 ~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPE----lL~KyI 742 (952)
T KOG0735|consen 667 EDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPE----LLSKYI 742 (952)
T ss_pred eecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHH----HHHHHh
Confidence 4578999999999988877643311 23456777789999999999999999999998888777642211 100000
Q ss_pred ecCchhHh-hhhhhhhccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeC
Q 006051 393 KDGGEWML-EAGALVLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN 460 (663)
Q Consensus 393 ~~~~~~~~-~~g~l~~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN 460 (663)
-.+.+.+- -......|.++|+|+||||.+.+. ..+.|+.-|+--. | -..+.|+|||.
T Consensus 743 GaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E------g-----l~GV~i~aaTs 811 (952)
T KOG0735|consen 743 GASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE------G-----LDGVYILAATS 811 (952)
T ss_pred cccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc------c-----cceEEEEEecC
Confidence 00000000 001112357899999999998653 3455666665211 1 13557899998
Q ss_pred CCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCC---CCCCCCCCCHHHHHHHH
Q 006051 461 PKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKD---TEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 461 ~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~---~~~~~~~~~~~~l~~~i 535 (663)
++...| |||++ |+|-.+.. +.|++..+-.|.+-+-+........+ .....+.|+.++|+..+
T Consensus 812 RpdliD------------pALLRpGRlD~~v~C-~~P~~~eRl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq~ll 878 (952)
T KOG0735|consen 812 RPDLID------------PALLRPGRLDKLVYC-PLPDEPERLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQSLL 878 (952)
T ss_pred CccccC------------HhhcCCCccceeeeC-CCCCcHHHHHHHHHHhhccCCccccchHHHhhhcCCCchhhHHHHH
Confidence 875444 58888 99988877 45554443333333333221111100 12234556777777665
Q ss_pred HHH
Q 006051 536 YFV 538 (663)
Q Consensus 536 ~~~ 538 (663)
.-|
T Consensus 879 ~~A 881 (952)
T KOG0735|consen 879 YNA 881 (952)
T ss_pred HHH
Confidence 433
No 126
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.19 E-value=7.6e-11 Score=134.78 Aligned_cols=188 Identities=20% Similarity=0.156 Sum_probs=105.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhh---hccCCeeecccccccChh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV---LADGGLCCIDEFDSMREH 424 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~---~a~~gvl~iDEid~l~~~ 424 (663)
.++||+||||||||++++++++.++.+++........... .+.+..... ..+. ...++|+||||+|.+...
T Consensus 186 ~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~-----~g~~~~~~~-~~f~~a~~~~P~IifIDEiD~l~~~ 259 (644)
T PRK10733 186 KGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF-----VGVGASRVR-DMFEQAKKAAPCIIFIDEIDAVGRQ 259 (644)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh-----hcccHHHHH-HHHHHHHhcCCcEEEehhHhhhhhc
Confidence 5699999999999999999999988887764322111000 000110000 0111 225689999999998421
Q ss_pred --------------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhh
Q 006051 425 --------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIV 488 (663)
Q Consensus 425 --------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli 488 (663)
..+.++..|+.- .-+..+.+|||||++..+ .+++++ |||..
T Consensus 260 r~~~~~g~~~~~~~~ln~lL~~mdg~-----------~~~~~vivIaaTN~p~~l------------D~Al~RpgRfdr~ 316 (644)
T PRK10733 260 RGAGLGGGHDEREQTLNQMLVEMDGF-----------EGNEGIIVIAATNRPDVL------------DPALLRPGRFDRQ 316 (644)
T ss_pred cCCCCCCCchHHHHHHHHHHHhhhcc-----------cCCCCeeEEEecCChhhc------------CHHHhCCcccceE
Confidence 112233333311 113567999999998544 458886 99999
Q ss_pred hhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCC
Q 006051 489 LVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQN 568 (663)
Q Consensus 489 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~ 568 (663)
+.+..+...+..+++..|+.+... .+.++- ..+.+.
T Consensus 317 i~v~~Pd~~~R~~Il~~~~~~~~l------------------------------~~~~d~---~~la~~----------- 352 (644)
T PRK10733 317 VVVGLPDVRGREQILKVHMRRVPL------------------------------APDIDA---AIIARG----------- 352 (644)
T ss_pred EEcCCCCHHHHHHHHHHHhhcCCC------------------------------CCcCCH---HHHHhh-----------
Confidence 987443333333333333221110 011100 001100
Q ss_pred CccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 569 AARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 569 ~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
....|.+.|.++++-|..+|.-..+..|+..|+..|+..+
T Consensus 353 t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v 392 (644)
T PRK10733 353 TPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKI 392 (644)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHH
Confidence 2234567777777777776766667777777777776544
No 127
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.19 E-value=4e-11 Score=120.97 Aligned_cols=150 Identities=23% Similarity=0.294 Sum_probs=94.0
Q ss_pred ccCchhHHH--HHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc---eEEeCCCcccCCceE
Q 006051 315 QVFGLFTVK--LAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS---VITTGLGSTSAGLTV 389 (663)
Q Consensus 315 ~i~G~~~~K--~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~---~~~~~~~~~~~gl~~ 389 (663)
+.+||+.+- .+++-.++.. ..-..++|.||||||||+|||.++..+..+ ++. .+.+.++
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq-----------~~ipSmIlWGppG~GKTtlArlia~tsk~~Syrfve--lSAt~a~--- 202 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQ-----------NRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVE--LSATNAK--- 202 (554)
T ss_pred HhcchhhhcCcchHHHHHHHc-----------CCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEE--Eeccccc---
Confidence 456776442 4666666542 112568999999999999999999877654 332 2222111
Q ss_pred EEeecCchhHhhhh-hh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCC
Q 006051 390 TAVKDGGEWMLEAG-AL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDP 467 (663)
Q Consensus 390 ~~~~~~~~~~~~~g-~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~ 467 (663)
+.+-...+..+. .. .....-|+||||+.+++..+|+.++...|.|.| .+|+||...-.
T Consensus 203 --t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I---------------~lIGATTENPS--- 262 (554)
T KOG2028|consen 203 --TNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDI---------------TLIGATTENPS--- 262 (554)
T ss_pred --hHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCce---------------EEEecccCCCc---
Confidence 111111111111 11 112457999999999999999999999999887 78888854311
Q ss_pred CCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 468 NLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 468 ~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
+.+..||++|+- +|.+...+......++.+.|.
T Consensus 263 -------Fqln~aLlSRC~-VfvLekL~~n~v~~iL~raia 295 (554)
T KOG2028|consen 263 -------FQLNAALLSRCR-VFVLEKLPVNAVVTILMRAIA 295 (554)
T ss_pred -------cchhHHHHhccc-eeEeccCCHHHHHHHHHHHHH
Confidence 345569999995 455655555555555554443
No 128
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.19 E-value=4.5e-11 Score=123.13 Aligned_cols=146 Identities=19% Similarity=0.115 Sum_probs=84.9
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhh--hccCCeeeccccccc
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV--LADGGLCCIDEFDSM 421 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~--~a~~gvl~iDEid~l 421 (663)
++.+..++|+||||||||.+++++++.++.+++....+....+.....-+.-.+.+.++.... ....+|+||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 466788999999999999999999999988877654332221111100000011122222221 224789999999987
Q ss_pred Chhh---------H---HhHHHHHHhceeeeeccCce--eecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--hh
Q 006051 422 REHD---------R---ATIHEAMEQQTISVAKAGLV--TTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RF 485 (663)
Q Consensus 422 ~~~~---------~---~~L~~~me~~~i~i~k~g~~--~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RF 485 (663)
.+.. | ..|+..|++-+ .+.-.|.. .....++.||+|||.+. .|.+||++ ||
T Consensus 225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~-~v~l~G~w~~~~~~~~V~VIaTTNrpd------------~LDpALlRpGRf 291 (413)
T PLN00020 225 AGRFGTTQYTVNNQMVNGTLMNIADNPT-NVSLGGDWREKEEIPRVPIIVTGNDFS------------TLYAPLIRDGRM 291 (413)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCc-cccccccccccccCCCceEEEeCCCcc------------cCCHhHcCCCCC
Confidence 4321 1 23444444311 11112221 12356789999999874 45569999 99
Q ss_pred hhhhhhcCCCChhHHHHHHH
Q 006051 486 DIVLVLLDTKNPEWDAVVSS 505 (663)
Q Consensus 486 dli~~l~d~~~~~~d~~i~~ 505 (663)
|..+. .|+.+-+..|.+
T Consensus 292 Dk~i~---lPd~e~R~eIL~ 308 (413)
T PLN00020 292 EKFYW---APTREDRIGVVH 308 (413)
T ss_pred CceeC---CCCHHHHHHHHH
Confidence 99764 355544444433
No 129
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.18 E-value=4.6e-10 Score=118.40 Aligned_cols=148 Identities=20% Similarity=0.288 Sum_probs=92.0
Q ss_pred ccCCeeecccccccCh------------hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCcccccc
Q 006051 408 ADGGLCCIDEFDSMRE------------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNT 475 (663)
Q Consensus 408 a~~gvl~iDEid~l~~------------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~ 475 (663)
+..||+||||||++.. ..|..|+..||--++.+ +.|... ..++.+||+ |.|...+ ..
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~--T~~ILFI~~----GAF~~~k----p~ 314 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVK--TDHILFIAA----GAFQLAK----PS 314 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEE--CCceeEEec----CCcCCCC----hh
Confidence 5789999999999853 25778888888766654 443222 234455554 3332211 12
Q ss_pred CCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHc-cCCCccCHHHHHHH
Q 006051 476 TLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKG-YFKPILTKEAEKVI 554 (663)
Q Consensus 476 ~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~-~~~p~ls~ea~~~l 554 (663)
.|-|.|.-||.+++.+.+...++.-+ ||... ....++.|.+..+. .+.-.++++|...|
T Consensus 315 DlIPEl~GR~Pi~v~L~~L~~edL~r-----ILteP---------------~nsLikQy~~Lf~~egv~L~Ftd~Al~~I 374 (441)
T TIGR00390 315 DLIPELQGRFPIRVELQALTTDDFER-----ILTEP---------------KNSLIKQYKALMKTEGVNIEFSDEAIKRI 374 (441)
T ss_pred hccHHHhCccceEEECCCCCHHHHHH-----HhcCC---------------hhHHHHHHHHHHhhcCcEEEEeHHHHHHH
Confidence 46789999999999986665444433 33211 12567777766553 35567999999999
Q ss_pred HHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhc
Q 006051 555 SSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARL 590 (663)
Q Consensus 555 ~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l 590 (663)
.+........ ...+-.|.|.+++.-.-.-+..
T Consensus 375 A~~A~~~N~~----~~~iGAR~LrtilE~~l~d~~f 406 (441)
T TIGR00390 375 AELAYNVNEK----TENIGARRLHTVLERLLEDISF 406 (441)
T ss_pred HHHHHHhccc----ccccchhhHHHHHHHHHHHHHh
Confidence 9875443111 1234588888888755444443
No 130
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.17 E-value=2.5e-10 Score=133.95 Aligned_cols=204 Identities=14% Similarity=0.095 Sum_probs=126.3
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC----------ceEEeCCC
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR----------SVITTGLG 381 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~----------~~~~~~~~ 381 (663)
-...++|++..-..++-.|..+ ...|++|+||||||||++++.+++.... .++....+
T Consensus 185 ~ld~~iGr~~ei~~~i~~l~r~------------~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~ 252 (852)
T TIGR03345 185 KIDPVLGRDDEIRQMIDILLRR------------RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG 252 (852)
T ss_pred CCCcccCCHHHHHHHHHHHhcC------------CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehh
Confidence 3447889987766666656442 2368999999999999999999986532 22222222
Q ss_pred cccCCceEEEeecCchhHhhhhhhh----h-ccCCeeecccccccCh-----hhH---HhHHHHHHhceeeeeccCceee
Q 006051 382 STSAGLTVTAVKDGGEWMLEAGALV----L-ADGGLCCIDEFDSMRE-----HDR---ATIHEAMEQQTISVAKAGLVTT 448 (663)
Q Consensus 382 ~~~~gl~~~~~~~~~~~~~~~g~l~----~-a~~gvl~iDEid~l~~-----~~~---~~L~~~me~~~i~i~k~g~~~~ 448 (663)
...+| ....|+|......+. . ..+.|+||||++.+.. ..+ +.|..+|+.|.+
T Consensus 253 ~l~ag-----~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l---------- 317 (852)
T TIGR03345 253 LLQAG-----ASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL---------- 317 (852)
T ss_pred hhhcc-----cccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCe----------
Confidence 21111 011244433322221 1 1356999999999853 222 357777877765
Q ss_pred cCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCH
Q 006051 449 LSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPL 528 (663)
Q Consensus 449 ~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 528 (663)
.+||||++.. +..-+.+.+||.+||. ++.+..+..++...++ +.+...... ...-.++.
T Consensus 318 -----~~IgaTT~~e-------~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL-~~~~~~~e~-------~~~v~i~d 376 (852)
T TIGR03345 318 -----RTIAATTWAE-------YKKYFEKDPALTRRFQ-VVKVEEPDEETAIRML-RGLAPVLEK-------HHGVLILD 376 (852)
T ss_pred -----EEEEecCHHH-------HhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHH-HHHHHhhhh-------cCCCeeCH
Confidence 8999999841 1122456789999997 4566444444444443 344332221 11234788
Q ss_pred HHHHHHHHHHHccCCCc-cCHHHHHHHHHHHHHHHh
Q 006051 529 AMLRRYIYFVKGYFKPI-LTKEAEKVISSYYQLQRR 563 (663)
Q Consensus 529 ~~l~~~i~~~r~~~~p~-ls~ea~~~l~~~y~~~r~ 563 (663)
+.+...+..+.+++.-. +++.|.++|.......|.
T Consensus 377 ~al~~~~~ls~ryi~~r~LPDKAIdlldea~a~~~~ 412 (852)
T TIGR03345 377 EAVVAAVELSHRYIPGRQLPDKAVSLLDTACARVAL 412 (852)
T ss_pred HHHHHHHHHcccccccccCccHHHHHHHHHHHHHHH
Confidence 99999999888776543 789999999987665554
No 131
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=9.5e-10 Score=121.20 Aligned_cols=140 Identities=19% Similarity=0.208 Sum_probs=84.9
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC----ceEEeCC----CcccCC
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGL----GSTSAG 386 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~----~~~~~~~----~~~~~g 386 (663)
+|+||+.+++.+..++..| +-++.+||+||||+|||++|+.+++.... ....++. .....+
T Consensus 15 eiiGqe~v~~~L~~~I~~g-----------rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~ 83 (535)
T PRK08451 15 ELIGQESVSKTLSLALDNN-----------RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALEN 83 (535)
T ss_pred HccCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhc
Confidence 7899999999999988765 11233589999999999999999986521 1000000 000000
Q ss_pred --ceEEEeec----C----chhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 387 --LTVTAVKD----G----GEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 387 --l~~~~~~~----~----~~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
........ + .+........ ..+...|++|||+++|+.+.+++|+..||+- +..+.+
T Consensus 84 ~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEp-------------p~~t~F 150 (535)
T PRK08451 84 RHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEP-------------PSYVKF 150 (535)
T ss_pred CCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhc-------------CCceEE
Confidence 00000000 0 1110000000 1245679999999999999999999999972 334556
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
|.+||.. ..+.++++||+. .+.+
T Consensus 151 IL~ttd~------------~kL~~tI~SRc~-~~~F 173 (535)
T PRK08451 151 ILATTDP------------LKLPATILSRTQ-HFRF 173 (535)
T ss_pred EEEECCh------------hhCchHHHhhce-eEEc
Confidence 6666533 256789999974 4545
No 132
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.16 E-value=1.8e-11 Score=111.17 Aligned_cols=114 Identities=22% Similarity=0.305 Sum_probs=76.6
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhh---hcc-CCeeecccccccChhh
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV---LAD-GGLCCIDEFDSMREHD 425 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~---~a~-~gvl~iDEid~l~~~~ 425 (663)
|||+||||||||++++.+++.+..+++........... .......+ .+.+. ... .+|+||||+|.+....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~-----~~~~~~~i-~~~~~~~~~~~~~~vl~iDe~d~l~~~~ 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSY-----AGDSEQKI-RDFFKKAKKSAKPCVLFIDEIDKLFPKS 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSS-----TTHHHHHH-HHHHHHHHHTSTSEEEEEETGGGTSHHC
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccc-----cccccccc-ccccccccccccceeeeeccchhccccc
Confidence 68999999999999999999998888765544322110 00010000 11111 123 6899999999997765
Q ss_pred -----------HHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhh-hhhhhhhhh
Q 006051 426 -----------RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLL-SRFDIVLVL 491 (663)
Q Consensus 426 -----------~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl-~RFdli~~l 491 (663)
...|...|+...- ...++.+|++||... .++++++ +||+..+.+
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~~~~----------~~~~~~vI~ttn~~~------------~i~~~l~~~rf~~~i~~ 130 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDNPSS----------KNSRVIVIATTNSPD------------KIDPALLRSRFDRRIEF 130 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHTTTT----------TSSSEEEEEEESSGG------------GSCHHHHSTTSEEEEEE
T ss_pred ccccccccccccceeeeccccccc----------ccccceeEEeeCChh------------hCCHhHHhCCCcEEEEc
Confidence 5667777765331 135679999999852 5667999 999987765
No 133
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.16 E-value=3.5e-10 Score=130.20 Aligned_cols=201 Identities=18% Similarity=0.167 Sum_probs=118.3
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc----------CCceEEeCCCcc
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLGST 383 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~----------~~~~~~~~~~~~ 383 (663)
..++|.+..-..++-.|.. +...|+||+||||||||.+++.++... ...++....+.
T Consensus 186 ~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~- 252 (758)
T PRK11034 186 DPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS- 252 (758)
T ss_pred CcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH-
Confidence 3478887666555555543 123789999999999999999999743 11222211111
Q ss_pred cCCceEEEeecCchhHhhhh----hhhhccCCeeecccccccC---------hhhHHhHHHHHHhceeeeeccCceeecC
Q 006051 384 SAGLTVTAVKDGGEWMLEAG----ALVLADGGLCCIDEFDSMR---------EHDRATIHEAMEQQTISVAKAGLVTTLS 450 (663)
Q Consensus 384 ~~gl~~~~~~~~~~~~~~~g----~l~~a~~gvl~iDEid~l~---------~~~~~~L~~~me~~~i~i~k~g~~~~~~ 450 (663)
+.+ ..+..|+|..... .+..+.++|+||||++.+- .+..+.|..+++.|.+
T Consensus 253 ---lla-G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i------------ 316 (758)
T PRK11034 253 ---LLA-GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKI------------ 316 (758)
T ss_pred ---Hhc-ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCe------------
Confidence 110 0111133332221 2223567899999999871 1222335556665544
Q ss_pred CcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHH
Q 006051 451 TRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAM 530 (663)
Q Consensus 451 ~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~ 530 (663)
.+|+|||+.. +..-+...++|.+||+ .+.+. .++.+....|.+.+...... ...-.++.+.
T Consensus 317 ---~vIgATt~~E-------~~~~~~~D~AL~rRFq-~I~v~-ePs~~~~~~IL~~~~~~ye~-------~h~v~i~~~a 377 (758)
T PRK11034 317 ---RVIGSTTYQE-------FSNIFEKDRALARRFQ-KIDIT-EPSIEETVQIINGLKPKYEA-------HHDVRYTAKA 377 (758)
T ss_pred ---EEEecCChHH-------HHHHhhccHHHHhhCc-EEEeC-CCCHHHHHHHHHHHHHHhhh-------ccCCCcCHHH
Confidence 8999999851 1111346679999997 45564 44444444444444333221 1223577888
Q ss_pred HHHHHHHHHccCCCc-cCHHHHHHHHHHHHHHH
Q 006051 531 LRRYIYFVKGYFKPI-LTKEAEKVISSYYQLQR 562 (663)
Q Consensus 531 l~~~i~~~r~~~~p~-ls~ea~~~l~~~y~~~r 562 (663)
++..+..+.+++... +++.|.++|.......|
T Consensus 378 l~~a~~ls~ryi~~r~lPdKaidlldea~a~~~ 410 (758)
T PRK11034 378 VRAAVELAVKYINDRHLPDKAIDVIDEAGARAR 410 (758)
T ss_pred HHHHHHHhhccccCccChHHHHHHHHHHHHhhc
Confidence 888888887776644 77788888887765544
No 134
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.2e-09 Score=120.92 Aligned_cols=216 Identities=18% Similarity=0.163 Sum_probs=124.9
Q ss_pred HHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc
Q 006051 292 QFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 292 ~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+|++|+...|. +|.||+.++..+..++..+ +-.+.+||+||||||||++|+++++..
T Consensus 3 ~l~~KyRP~~~~-----------dvvGq~~v~~~L~~~i~~~-----------~l~ha~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 3 ALYQRARPITFD-----------EVVGQEHVKEVLLAALRQG-----------RLGHAYLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred hHHHhhCCCCHH-----------HhcChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 467777665553 7899999999988888764 111334999999999999999999865
Q ss_pred CC--ceEEeCCCc----------ccCCce-EEEeecCc-----hhHhhhhhh-hhccCCeeecccccccChhhHHhHHHH
Q 006051 372 NR--SVITTGLGS----------TSAGLT-VTAVKDGG-----EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEA 432 (663)
Q Consensus 372 ~~--~~~~~~~~~----------~~~gl~-~~~~~~~~-----~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~ 432 (663)
.. +. ...++. +...+. .......+ +........ ..+...|++|||++.++.+.++.|+..
T Consensus 61 ~c~~~~-~~~cg~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~ 139 (504)
T PRK14963 61 NCSGED-PKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKT 139 (504)
T ss_pred hccCCC-CCCCCcChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHH
Confidence 31 11 001110 000010 00000011 111111111 124567999999999999999999999
Q ss_pred HHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcC
Q 006051 433 MEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGG 512 (663)
Q Consensus 433 me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~ 512 (663)
|++. +..+.+|.++|.. ..+.+++.+|+. .+.+..
T Consensus 140 LEep-------------~~~t~~Il~t~~~------------~kl~~~I~SRc~-~~~f~~------------------- 174 (504)
T PRK14963 140 LEEP-------------PEHVIFILATTEP------------EKMPPTILSRTQ-HFRFRR------------------- 174 (504)
T ss_pred HHhC-------------CCCEEEEEEcCCh------------hhCChHHhcceE-EEEecC-------------------
Confidence 9873 2334556666543 145668888875 343422
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccC
Q 006051 513 LSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMF 592 (663)
Q Consensus 513 ~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~ 592 (663)
++.+.+..++...-..-.-.++++|.+.|... ..+++|.+.+++....+.
T Consensus 175 -------------ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~------------s~GdlR~aln~Lekl~~~----- 224 (504)
T PRK14963 175 -------------LTEEEIAGKLRRLLEAEGREAEPEALQLVARL------------ADGAMRDAESLLERLLAL----- 224 (504)
T ss_pred -------------CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHhc-----
Confidence 34444444443321112334677777777655 234577776666543221
Q ss_pred CCccChhhHHHHH
Q 006051 593 RNEVTRLDAITAI 605 (663)
Q Consensus 593 ~~~V~~~Dv~~Ai 605 (663)
...|+.+||..++
T Consensus 225 ~~~It~~~V~~~l 237 (504)
T PRK14963 225 GTPVTRKQVEEAL 237 (504)
T ss_pred CCCCCHHHHHHHH
Confidence 3467888877654
No 135
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.4e-09 Score=121.31 Aligned_cols=206 Identities=20% Similarity=0.157 Sum_probs=116.7
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeC--CCc--------cc
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG--LGS--------TS 384 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~--~~~--------~~ 384 (663)
+|+||+.++..|.-++..+ |-..++||+||||||||++|+.+++.+.......+ ++. ..
T Consensus 17 dIiGQe~v~~~L~~ai~~~-----------ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g 85 (624)
T PRK14959 17 EVAGQETVKAILSRAAQEN-----------RVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQG 85 (624)
T ss_pred HhcCCHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcC
Confidence 6789999998888888664 22367899999999999999999987643110000 000 00
Q ss_pred CCceEEEeec---Cc-----hhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 385 AGLTVTAVKD---GG-----EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 385 ~gl~~~~~~~---~~-----~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
.......+.. .+ ......+.. ..+...|++|||+++|+.+.++.|+..||+- +..+.+
T Consensus 86 ~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP-------------~~~~if 152 (624)
T PRK14959 86 MHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEP-------------PARVTF 152 (624)
T ss_pred CCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhcc-------------CCCEEE
Confidence 0011111110 01 000001111 1235679999999999999999999999863 233456
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
|.+||.. ..+.+.+++|+. ++.+... +.+.+..++
T Consensus 153 ILaTt~~------------~kll~TI~SRcq-~i~F~pL--------------------------------s~~eL~~~L 187 (624)
T PRK14959 153 VLATTEP------------HKFPVTIVSRCQ-HFTFTRL--------------------------------SEAGLEAHL 187 (624)
T ss_pred EEecCCh------------hhhhHHHHhhhh-ccccCCC--------------------------------CHHHHHHHH
Confidence 6666543 144567889984 3344333 333333333
Q ss_pred HHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 536 YFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
...-......+++++.++|..+. .+++|...+++.-+ .+ ...+.|+.+||..++
T Consensus 188 ~~il~~egi~id~eal~lIA~~s------------~GdlR~Al~lLeql--l~--~g~~~It~d~V~~~l 241 (624)
T PRK14959 188 TKVLGREGVDYDPAAVRLIARRA------------AGSVRDSMSLLGQV--LA--LGESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHc------------CCCHHHHHHHHHHH--HH--hcCCCcCHHHHHHHh
Confidence 22111123346777777776651 24466665555422 11 134567777776555
No 136
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.15 E-value=1.1e-09 Score=118.72 Aligned_cols=210 Identities=14% Similarity=0.123 Sum_probs=118.4
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc-eEE---------eCCCc--
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS-VIT---------TGLGS-- 382 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~-~~~---------~~~~~-- 382 (663)
+|+||+.+++.+.-++..| |-++.+||+||||+|||++|+++++..... ... ..++.
T Consensus 17 eiiGq~~~~~~L~~~~~~~-----------~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~ 85 (397)
T PRK14955 17 DITAQEHITRTIQNSLRMG-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECE 85 (397)
T ss_pred hccChHHHHHHHHHHHHhC-----------CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCH
Confidence 7899999999888777664 222459999999999999999999865321 100 00100
Q ss_pred ------ccCCceEEEeecC---c-hhHhh-hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCcee
Q 006051 383 ------TSAGLTVTAVKDG---G-EWMLE-AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVT 447 (663)
Q Consensus 383 ------~~~gl~~~~~~~~---~-~~~~~-~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~ 447 (663)
+...+....+... + +.... ...+ ..++..|++|||++.|+...++.|+..||+-
T Consensus 86 ~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep----------- 154 (397)
T PRK14955 86 SCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEP----------- 154 (397)
T ss_pred HHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcC-----------
Confidence 0001111111110 0 00000 0111 2346679999999999998999999999863
Q ss_pred ecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCC
Q 006051 448 TLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWP 527 (663)
Q Consensus 448 ~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 527 (663)
+..+.+|.+++.. ..+.+++.+|+. ++.+.. ++
T Consensus 155 --~~~t~~Il~t~~~------------~kl~~tl~sR~~-~v~f~~--------------------------------l~ 187 (397)
T PRK14955 155 --PPHAIFIFATTEL------------HKIPATIASRCQ-RFNFKR--------------------------------IP 187 (397)
T ss_pred --CCCeEEEEEeCCh------------HHhHHHHHHHHH-HhhcCC--------------------------------CC
Confidence 2334555555432 145568888885 333322 33
Q ss_pred HHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhc-cCCCccChhhHHHHH
Q 006051 528 LAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARL-MFRNEVTRLDAITAI 605 (663)
Q Consensus 528 ~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l-~~~~~V~~~Dv~~Ai 605 (663)
.+.+.+++...-+.-...+++++.+.|... ..+++|.+.+.+.-..+.+.- .....|+.+||..++
T Consensus 188 ~~ei~~~l~~~~~~~g~~i~~~al~~l~~~------------s~g~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 188 LEEIQQQLQGICEAEGISVDADALQLIGRK------------AQGSMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 344444443221122345777777777665 234566666665544444421 123467777665543
No 137
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.15 E-value=1.1e-09 Score=123.19 Aligned_cols=219 Identities=17% Similarity=0.181 Sum_probs=126.7
Q ss_pred HHHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHh
Q 006051 291 KQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|++++...|. ++.|++.++..+.-++..| +..+.+||+||+|||||++|+.+++.
T Consensus 4 ~al~~k~rP~~f~-----------~viGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~GtGKTt~Ak~lAka 61 (559)
T PRK05563 4 QALYRKWRPQTFE-----------DVVGQEHITKTLKNAIKQG-----------KISHAYLFSGPRGTGKTSAAKIFAKA 61 (559)
T ss_pred HHHHHHhCCCcHH-----------hccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4667777665543 7899999999998888764 22245789999999999999999986
Q ss_pred cCCceEEeC--CCc--------ccCCceEEEeec---Cc-----hhHhhhhhh-hhccCCeeecccccccChhhHHhHHH
Q 006051 371 SNRSVITTG--LGS--------TSAGLTVTAVKD---GG-----EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHE 431 (663)
Q Consensus 371 ~~~~~~~~~--~~~--------~~~gl~~~~~~~---~~-----~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~ 431 (663)
....--..+ ++. .........+.. .+ +..-..... ..+...|++|||+++|+....++|+.
T Consensus 62 l~c~~~~~~~pC~~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLK 141 (559)
T PRK05563 62 VNCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLK 141 (559)
T ss_pred hcCCCCCCCCCCCccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHH
Confidence 532110000 000 000111101100 01 000000000 13456799999999999999999999
Q ss_pred HHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhc
Q 006051 432 AMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEG 511 (663)
Q Consensus 432 ~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~ 511 (663)
.||+- +..+.+|.+|+.. ..++++++||+.. +.+..
T Consensus 142 tLEep-------------p~~~ifIlatt~~------------~ki~~tI~SRc~~-~~f~~------------------ 177 (559)
T PRK05563 142 TLEEP-------------PAHVIFILATTEP------------HKIPATILSRCQR-FDFKR------------------ 177 (559)
T ss_pred HhcCC-------------CCCeEEEEEeCCh------------hhCcHHHHhHheE-EecCC------------------
Confidence 99863 3344555555432 1466789999853 33322
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhcc
Q 006051 512 GLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLM 591 (663)
Q Consensus 512 ~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~ 591 (663)
++.+.+..++.+.-+.-...+++++.+.|.... .+++|...+++.-+.+.+
T Consensus 178 --------------~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s------------~G~~R~al~~Ldq~~~~~--- 228 (559)
T PRK05563 178 --------------ISVEDIVERLKYILDKEGIEYEDEALRLIARAA------------EGGMRDALSILDQAISFG--- 228 (559)
T ss_pred --------------CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc------------CCCHHHHHHHHHHHHHhc---
Confidence 233333333332222223456777777766641 245777767766443332
Q ss_pred CCCccChhhHHHHH
Q 006051 592 FRNEVTRLDAITAI 605 (663)
Q Consensus 592 ~~~~V~~~Dv~~Ai 605 (663)
.+.|+.+||..++
T Consensus 229 -~~~It~~~V~~vl 241 (559)
T PRK05563 229 -DGKVTYEDALEVT 241 (559)
T ss_pred -cCCCCHHHHHHHh
Confidence 4567888777654
No 138
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.13 E-value=2.4e-09 Score=119.42 Aligned_cols=144 Identities=20% Similarity=0.184 Sum_probs=85.1
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc--eEEeCCCc----------
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGLGS---------- 382 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~--~~~~~~~~---------- 382 (663)
+|+|++.+++.+..++..+ +-.+.+||+||||+|||++|+.+++..... .....++.
T Consensus 17 divGq~~v~~~L~~~i~~~-----------~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~ 85 (527)
T PRK14969 17 ELVGQEHVVRALTNALEQQ-----------RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSG 85 (527)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcC
Confidence 7889999999998888764 112346999999999999999999875421 10001110
Q ss_pred ccCCce-EEEeecCchhHhh--hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 383 TSAGLT-VTAVKDGGEWMLE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 383 ~~~gl~-~~~~~~~~~~~~~--~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
....+. .......+.-..+ -... ..+...|++|||+++|+...+++|+..||+- +..+.+
T Consensus 86 ~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEep-------------p~~~~f 152 (527)
T PRK14969 86 RFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEP-------------PEHVKF 152 (527)
T ss_pred CCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCC-------------CCCEEE
Confidence 000000 0000000100000 0000 1234579999999999999999999999973 234455
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCC
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTK 495 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~ 495 (663)
|.+||.. ..+.++++||+ .++.+...+
T Consensus 153 IL~t~d~------------~kil~tI~SRc-~~~~f~~l~ 179 (527)
T PRK14969 153 ILATTDP------------QKIPVTVLSRC-LQFNLKQMP 179 (527)
T ss_pred EEEeCCh------------hhCchhHHHHH-HHHhcCCCC
Confidence 5555432 14555799998 555553433
No 139
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.12 E-value=1.3e-09 Score=122.40 Aligned_cols=144 Identities=22% Similarity=0.211 Sum_probs=84.7
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce--EEeCCCcccCC------
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV--ITTGLGSTSAG------ 386 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~--~~~~~~~~~~g------ 386 (663)
+|+||+.++..|.-++..| |-.+-+||+||+|+|||++|+.+++.+...- -..+......|
T Consensus 17 dviGQe~vv~~L~~~l~~~-----------rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~ 85 (618)
T PRK14951 17 EMVGQEHVVQALTNALTQQ-----------RLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACR 85 (618)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHH
Confidence 6789999999999888775 2223459999999999999999998654200 00000000000
Q ss_pred -------ceEEEee---cCch-hH--hhhhhh---hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecC
Q 006051 387 -------LTVTAVK---DGGE-WM--LEAGAL---VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLS 450 (663)
Q Consensus 387 -------l~~~~~~---~~~~-~~--~~~g~l---~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~ 450 (663)
.....+. ..+. .. +..... ..+...|++|||+++|+.+..++|+..||+- +
T Consensus 86 ~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEP-------------P 152 (618)
T PRK14951 86 DIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEP-------------P 152 (618)
T ss_pred HHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccC-------------C
Confidence 0000000 0010 00 000000 1123469999999999999999999999862 3
Q ss_pred CcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCC
Q 006051 451 TRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTK 495 (663)
Q Consensus 451 ~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~ 495 (663)
..+.+|.+|+.. ..+.+++++|+ .+|.+...+
T Consensus 153 ~~~~fIL~Ttd~------------~kil~TIlSRc-~~~~f~~Ls 184 (618)
T PRK14951 153 EYLKFVLATTDP------------QKVPVTVLSRC-LQFNLRPMA 184 (618)
T ss_pred CCeEEEEEECCc------------hhhhHHHHHhc-eeeecCCCC
Confidence 344555555432 14566899998 455553333
No 140
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.12 E-value=7.3e-11 Score=115.78 Aligned_cols=166 Identities=21% Similarity=0.232 Sum_probs=100.6
Q ss_pred ccCchh----HHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 315 QVFGLF----TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 315 ~i~G~~----~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
+|.|.+ .+|+++.|.|... ....-+.++++..|+|||+||||||.||+++|+.....|+..-. +.|...
T Consensus 186 diGGle~QiQEiKEsvELPLthP---E~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvG----seLiQk 258 (440)
T KOG0726|consen 186 DIGGLESQIQEIKESVELPLTHP---EYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVG----SELIQK 258 (440)
T ss_pred ccccHHHHHHHHHHhhcCCCCCH---HHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhh----HHHHHH
Confidence 455554 5677777776442 22233557788999999999999999999999876665543211 111111
Q ss_pred EeecCchhHhhhhhh-hhccCCeeecccccccC-----------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 391 AVKDGGEWMLEAGAL-VLADGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 391 ~~~~~~~~~~~~g~l-~~a~~gvl~iDEid~l~-----------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
.+-++...+-+.-.+ ......|+||||||.+. .+.|..+++.+.|-. |... ..++-||.|
T Consensus 259 ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQld------GFds--rgDvKvimA 330 (440)
T KOG0726|consen 259 YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD------GFDS--RGDVKVIMA 330 (440)
T ss_pred HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhcc------Cccc--cCCeEEEEe
Confidence 111111111110000 11247899999999974 345667788877522 2221 457789999
Q ss_pred eCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcC
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGG 512 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~ 512 (663)
||....+| |+|++ |.|-.+.+ ..+++.. .++|+..|.
T Consensus 331 Tnrie~LD------------PaLiRPGrIDrKIef-~~pDe~T----kkkIf~IHT 369 (440)
T KOG0726|consen 331 TNRIETLD------------PALIRPGRIDRKIEF-PLPDEKT----KKKIFQIHT 369 (440)
T ss_pred cccccccC------------HhhcCCCcccccccc-CCCchhh----hceeEEEee
Confidence 99985555 47877 88888876 4444443 345555554
No 141
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.11 E-value=1.2e-09 Score=122.06 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=91.9
Q ss_pred HHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccc-cccccCCCchHHHHHHHHHHhc
Q 006051 293 FWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESH-LLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~-iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+|++|+...| .+|+||+.+++.|..++..| | -.| +||+||+|||||++|+.+++..
T Consensus 3 l~~kyRP~~f-----------~eivGq~~i~~~L~~~i~~~-----------r-~~ha~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 3 LYRKYRPATF-----------AEVVGQEHVTEPLSSALDAG-----------R-INHAYLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred HHHHhCCCcH-----------HHhcCcHHHHHHHHHHHHcC-----------C-CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 5666665554 37899999999998888765 1 145 6999999999999999999865
Q ss_pred CCc--eEEeCCC---------cc-cCCceEEEeecC---chhHhh--hhhh----hhccCCeeecccccccChhhHHhHH
Q 006051 372 NRS--VITTGLG---------ST-SAGLTVTAVKDG---GEWMLE--AGAL----VLADGGLCCIDEFDSMREHDRATIH 430 (663)
Q Consensus 372 ~~~--~~~~~~~---------~~-~~gl~~~~~~~~---~~~~~~--~g~l----~~a~~gvl~iDEid~l~~~~~~~L~ 430 (663)
... .-...++ .. ........+... |.-..+ ...+ ..+...|++|||+++|+...+++|+
T Consensus 60 ~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALL 139 (584)
T PRK14952 60 NCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALL 139 (584)
T ss_pred ccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHH
Confidence 421 0000010 00 001111111110 100000 0000 1356779999999999999999999
Q ss_pred HHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 431 EAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 431 ~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
..||+- +..+.+|.+|+.. ..+.++++||+ ..+.+
T Consensus 140 K~LEEp-------------p~~~~fIL~tte~------------~kll~TI~SRc-~~~~F 174 (584)
T PRK14952 140 KIVEEP-------------PEHLIFIFATTEP------------EKVLPTIRSRT-HHYPF 174 (584)
T ss_pred HHHhcC-------------CCCeEEEEEeCCh------------HhhHHHHHHhc-eEEEe
Confidence 999972 3344566555433 25677899996 34444
No 142
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.09 E-value=6.3e-09 Score=116.52 Aligned_cols=206 Identities=15% Similarity=0.087 Sum_probs=118.5
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce----EEeCC------Cccc
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV----ITTGL------GSTS 384 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~----~~~~~------~~~~ 384 (663)
+|+||+.++..+.-++..| +-.+.+||+||||+|||++|+.+++.....- ..++. ....
T Consensus 17 diiGqe~iv~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~ 85 (563)
T PRK06647 17 SLEGQDFVVETLKHSIESN-----------KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDND 85 (563)
T ss_pred HccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcC
Confidence 7899999999988888764 1224589999999999999999998754210 00000 0000
Q ss_pred CCceEEEeecC---c--hhH-hh--hhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 385 AGLTVTAVKDG---G--EWM-LE--AGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 385 ~gl~~~~~~~~---~--~~~-~~--~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
..+....+.+. + +.. +. .-.. ..++..|++|||++.|+...+++|+..||+- +..+.+
T Consensus 86 ~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEep-------------p~~~vf 152 (563)
T PRK06647 86 NSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEP-------------PPYIVF 152 (563)
T ss_pred CCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccC-------------CCCEEE
Confidence 01111111110 1 100 00 0000 1245679999999999999999999999862 344566
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
|.+++.. ..+.+++.+|+.. +.+... +.+.+..++
T Consensus 153 I~~tte~------------~kL~~tI~SRc~~-~~f~~l--------------------------------~~~el~~~L 187 (563)
T PRK06647 153 IFATTEV------------HKLPATIKSRCQH-FNFRLL--------------------------------SLEKIYNML 187 (563)
T ss_pred EEecCCh------------HHhHHHHHHhceE-EEecCC--------------------------------CHHHHHHHH
Confidence 6655432 1466789999863 333222 223333333
Q ss_pred HHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 536 YFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
...-..-.-.++++|.++|... ..+++|.+.+++.-..+.+ ...++.+++..++
T Consensus 188 ~~i~~~egi~id~eAl~lLa~~------------s~GdlR~alslLdklis~~----~~~It~e~V~~ll 241 (563)
T PRK06647 188 KKVCLEDQIKYEDEALKWIAYK------------STGSVRDAYTLFDQVVSFS----DSDITLEQIRSKM 241 (563)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Confidence 2221112335677777777764 2245777766665433332 2457777776654
No 143
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=4.7e-09 Score=118.50 Aligned_cols=153 Identities=16% Similarity=0.173 Sum_probs=93.1
Q ss_pred HHHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHh
Q 006051 291 KQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..++++|+...| .+|+|++.++..+.-++..| +-.+.+||+||+|+|||++++.+++.
T Consensus 4 ~~l~~k~RP~~f-----------~~iiGq~~v~~~L~~~i~~~-----------~~~hayLf~Gp~G~GKtt~A~~lak~ 61 (576)
T PRK14965 4 LVLARKYRPQTF-----------SDLTGQEHVSRTLQNAIDTG-----------RVAHAFLFTGARGVGKTSTARILAKA 61 (576)
T ss_pred HHHHHHhCCCCH-----------HHccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 345566655554 27899999999999888765 12244699999999999999999987
Q ss_pred cCCce-E-EeCCCc--------ccCCceEEEeecC--------chhHhhhhhh-hhccCCeeecccccccChhhHHhHHH
Q 006051 371 SNRSV-I-TTGLGS--------TSAGLTVTAVKDG--------GEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHE 431 (663)
Q Consensus 371 ~~~~~-~-~~~~~~--------~~~gl~~~~~~~~--------~~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~ 431 (663)
....- . ...++. .+.......+.+. .+..-..... ..+...|++|||+++|+...+++|+.
T Consensus 62 l~c~~~~~~~~c~~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk 141 (576)
T PRK14965 62 LNCEQGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLK 141 (576)
T ss_pred hcCCCCCCCCCCCccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHH
Confidence 54210 0 000000 0000000001100 0110001001 12456799999999999999999999
Q ss_pred HHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 432 AMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 432 ~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
.||+- +..+.+|.+||.. ..++++++||+. .+.+
T Consensus 142 ~LEep-------------p~~~~fIl~t~~~------------~kl~~tI~SRc~-~~~f 175 (576)
T PRK14965 142 TLEEP-------------PPHVKFIFATTEP------------HKVPITILSRCQ-RFDF 175 (576)
T ss_pred HHHcC-------------CCCeEEEEEeCCh------------hhhhHHHHHhhh-hhhc
Confidence 99972 3445666666533 257778999984 4444
No 144
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.09 E-value=1.7e-09 Score=108.20 Aligned_cols=177 Identities=16% Similarity=0.165 Sum_probs=106.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecCchhHhhhhhhh-hccCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-LADGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~-~a~~gvl~iDEid~l~~ 423 (663)
.+++|+||||||||++|+++++.+.. +++....... ..+. ...+. ....++++|||++.++.
T Consensus 39 ~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~------------~~~~--~~~~~~~~~~~lLvIDdi~~l~~ 104 (226)
T TIGR03420 39 RFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL------------AQAD--PEVLEGLEQADLVCLDDVEAIAG 104 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH------------HHhH--HHHHhhcccCCEEEEeChhhhcC
Confidence 68999999999999999999986532 2221111000 0000 01111 12357999999999987
Q ss_pred hh--HHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCC-hhhhhhhh--hhhhhcCCCCh
Q 006051 424 HD--RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLS-GPLLSRFD--IVLVLLDTKNP 497 (663)
Q Consensus 424 ~~--~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~-~aLl~RFd--li~~l~d~~~~ 497 (663)
.. +..|..+++...- .+..+|.++|.. ..+ .+. +.|.+||. ..+.+..+..
T Consensus 105 ~~~~~~~L~~~l~~~~~------------~~~~iIits~~~~~~~----------~~~~~~L~~r~~~~~~i~l~~l~~- 161 (226)
T TIGR03420 105 QPEWQEALFHLYNRVRE------------AGGRLLIAGRAAPAQL----------PLRLPDLRTRLAWGLVFQLPPLSD- 161 (226)
T ss_pred ChHHHHHHHHHHHHHHH------------cCCeEEEECCCChHHC----------CcccHHHHHHHhcCeeEecCCCCH-
Confidence 54 7788887764220 011455666643 111 122 57888885 3444433222
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHH
Q 006051 498 EWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRML 577 (663)
Q Consensus 498 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~L 577 (663)
+.+..++..........+++++.+.|..+ |+.++|+|
T Consensus 162 -------------------------------~e~~~~l~~~~~~~~~~~~~~~l~~L~~~------------~~gn~r~L 198 (226)
T TIGR03420 162 -------------------------------EEKIAALQSRAARRGLQLPDEVADYLLRH------------GSRDMGSL 198 (226)
T ss_pred -------------------------------HHHHHHHHHHHHHcCCCCCHHHHHHHHHh------------ccCCHHHH
Confidence 11222221111112456889988888875 78899999
Q ss_pred HHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 578 ESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 578 e~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
..++..+.+.+.-.. ..|+...|.+++
T Consensus 199 ~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 199 MALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 999999887665544 468888887654
No 145
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=3.5e-10 Score=119.48 Aligned_cols=174 Identities=24% Similarity=0.231 Sum_probs=108.3
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.-+|.|.+.+|+++..+.+-+.-+.+.-..-......+||.||||||||+|++++|..+...++.... +.|+..++
T Consensus 152 ~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSa----ssLtsK~~ 227 (428)
T KOG0740|consen 152 WDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISA----SSLTSKYV 227 (428)
T ss_pred ccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccH----HHhhhhcc
Confidence 45788999999988776665533222111111223479999999999999999999998887766422 22333222
Q ss_pred ecCchhHhhhhhhh---hccCCeeecccccccChh--------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC
Q 006051 393 KDGGEWMLEAGALV---LADGGLCCIDEFDSMREH--------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 393 ~~~~~~~~~~g~l~---~a~~gvl~iDEid~l~~~--------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
-. ++..+.+ .+. ....+|+||||+|++-.. .+-...+++- ...|....-+.++.+++|||.
T Consensus 228 Ge-~eK~vra-lf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLi------q~~~~~s~~~drvlvigaTN~ 299 (428)
T KOG0740|consen 228 GE-SEKLVRA-LFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLL------QFDGKNSAPDDRVLVIGATNR 299 (428)
T ss_pred Ch-HHHHHHH-HHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHh------hhccccCCCCCeEEEEecCCC
Confidence 22 1111111 111 126789999999996221 1112222222 223333334558999999999
Q ss_pred CCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhc
Q 006051 462 KGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEG 511 (663)
Q Consensus 462 ~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~ 511 (663)
+...| .++++||.-.+.+ ..|+.+.+..+..+++..+
T Consensus 300 P~e~D------------ea~~Rrf~kr~yi-plPd~etr~~~~~~ll~~~ 336 (428)
T KOG0740|consen 300 PWELD------------EAARRRFVKRLYI-PLPDYETRSLLWKQLLKEQ 336 (428)
T ss_pred chHHH------------HHHHHHhhceeee-cCCCHHHHHHHHHHHHHhC
Confidence 84433 4888999888876 6777777777777777655
No 146
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.08 E-value=2e-09 Score=114.57 Aligned_cols=110 Identities=18% Similarity=0.172 Sum_probs=65.6
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC-----ceEEeCCCcccCCce
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-----SVITTGLGSTSAGLT 388 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~-----~~~~~~~~~~~~gl~ 388 (663)
.++.|++.++..+.-.+..+ ...|+||+||||||||++|+++++.... .+............
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~- 81 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQG- 81 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcc-
Confidence 36779999988887766543 1147999999999999999999986532 12221111000000
Q ss_pred EEEeecC-----------------chhHh-----hhhhh-hhccCCeeecccccccChhhHHhHHHHHHhc
Q 006051 389 VTAVKDG-----------------GEWML-----EAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQ 436 (663)
Q Consensus 389 ~~~~~~~-----------------~~~~~-----~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~ 436 (663)
....... ..... .++.. ..++..+++|||++.++.+.+..|.+.|++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~ 152 (337)
T PRK12402 82 KKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQY 152 (337)
T ss_pred hhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhc
Confidence 0000000 00000 00101 1245679999999999998889999998863
No 147
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=4.4e-09 Score=118.91 Aligned_cols=140 Identities=19% Similarity=0.219 Sum_probs=85.7
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEe---CCCc----ccCCc
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT---GLGS----TSAGL 387 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~---~~~~----~~~gl 387 (663)
+|.||+.+++.+.-++..| +..+.+||+||||+|||++|+.+|+.+...-... .++. .....
T Consensus 19 dIiGQe~~v~~L~~aI~~~-----------rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~ 87 (725)
T PRK07133 19 DIVGQDHIVQTLKNIIKSN-----------KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSL 87 (725)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCC
Confidence 7889999999998888765 2224579999999999999999998654211000 0000 00001
Q ss_pred eEEEeec---Cc-----hhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 388 TVTAVKD---GG-----EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 388 ~~~~~~~---~~-----~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
....... .+ +..-..... ..+...|++|||++.|....+++|+..||+- +..+.+|.+
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEP-------------P~~tifILa 154 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEP-------------PKHVIFILA 154 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcC-------------CCceEEEEE
Confidence 1000100 01 110011111 1245679999999999999999999999963 334455555
Q ss_pred eCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
|+.. ..+++++++|+. .+.+
T Consensus 155 Tte~------------~KLl~TI~SRcq-~ieF 174 (725)
T PRK07133 155 TTEV------------HKIPLTILSRVQ-RFNF 174 (725)
T ss_pred cCCh------------hhhhHHHHhhce-eEEc
Confidence 5432 156778999995 4444
No 148
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.08 E-value=3.8e-09 Score=111.46 Aligned_cols=198 Identities=17% Similarity=0.172 Sum_probs=114.3
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce-----EEeCCCcccCCceE
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-----ITTGLGSTSAGLTV 389 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~-----~~~~~~~~~~gl~~ 389 (663)
++.|++.++..+.-.+-.+ ...|++|+||||||||++++.+++...... +..... ...+..
T Consensus 18 ~~~g~~~~~~~l~~~i~~~------------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~-~~~~~~- 83 (319)
T PRK00440 18 EIVGQEEIVERLKSYVKEK------------NMPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNAS-DERGID- 83 (319)
T ss_pred HhcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccc-cccchH-
Confidence 5679999888888777543 114799999999999999999998643211 111000 000000
Q ss_pred EEeecCchhHhh---hhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCC
Q 006051 390 TAVKDGGEWMLE---AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 390 ~~~~~~~~~~~~---~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d 466 (663)
.. .+.... ...+..+...+++|||++.+..+.+..|+..|+... ..+.+|.++|...
T Consensus 84 -~~---~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~-------------~~~~lIl~~~~~~--- 143 (319)
T PRK00440 84 -VI---RNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYS-------------QNTRFILSCNYSS--- 143 (319)
T ss_pred -HH---HHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCC-------------CCCeEEEEeCCcc---
Confidence 00 000000 001111345699999999999988889999887532 2345666666431
Q ss_pred CCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCcc
Q 006051 467 PNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPIL 546 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~l 546 (663)
.+.+++.+|+.. +.+.. ++.+.+..++...-+.....+
T Consensus 144 ---------~l~~~l~sr~~~-~~~~~--------------------------------l~~~ei~~~l~~~~~~~~~~i 181 (319)
T PRK00440 144 ---------KIIDPIQSRCAV-FRFSP--------------------------------LKKEAVAERLRYIAENEGIEI 181 (319)
T ss_pred ---------ccchhHHHHhhe-eeeCC--------------------------------CCHHHHHHHHHHHHHHcCCCC
Confidence 344578888753 33322 223334444422211224457
Q ss_pred CHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 547 TKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 547 s~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
++++.+.|... ..+++|.+.+.++.+.+. ...||.+||..++
T Consensus 182 ~~~al~~l~~~------------~~gd~r~~~~~l~~~~~~-----~~~it~~~v~~~~ 223 (319)
T PRK00440 182 TDDALEAIYYV------------SEGDMRKAINALQAAAAT-----GKEVTEEAVYKIT 223 (319)
T ss_pred CHHHHHHHHHH------------cCCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHh
Confidence 78877777654 234577777777644332 3578888887665
No 149
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.07 E-value=4.3e-09 Score=122.16 Aligned_cols=147 Identities=19% Similarity=0.224 Sum_probs=90.5
Q ss_pred HHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC
Q 006051 293 FWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+|++|+...|. +|+||+.+++.|.-++..| |-.+-+||+||+|+|||++++.+++.+.
T Consensus 5 l~~KyRP~~f~-----------eiiGqe~v~~~L~~~i~~~-----------ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 5 LYRRYRPATFA-----------EVIGQEHVTEPLSTALDSG-----------RINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHhCCCCHH-----------HhcCcHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 56777665553 7889999999998888764 1223379999999999999999998764
Q ss_pred Cce----EEeCC--------CcccCCceEEEeecC---ch--h-Hhhhh-hh--hhccCCeeecccccccChhhHHhHHH
Q 006051 373 RSV----ITTGL--------GSTSAGLTVTAVKDG---GE--W-MLEAG-AL--VLADGGLCCIDEFDSMREHDRATIHE 431 (663)
Q Consensus 373 ~~~----~~~~~--------~~~~~gl~~~~~~~~---~~--~-~~~~g-~l--~~a~~gvl~iDEid~l~~~~~~~L~~ 431 (663)
..- ..+|. ...........+... +. . .+..- .+ ......|++|||+++|+...+++|+.
T Consensus 63 C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK 142 (824)
T PRK07764 63 CVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLK 142 (824)
T ss_pred cccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHH
Confidence 210 00100 000011111111110 10 0 01000 01 12456799999999999999999999
Q ss_pred HHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh
Q 006051 432 AMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 432 ~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd 486 (663)
.||+- +..+.||.+||... +|.++|+||+-
T Consensus 143 ~LEEp-------------P~~~~fIl~tt~~~------------kLl~TIrSRc~ 172 (824)
T PRK07764 143 IVEEP-------------PEHLKFIFATTEPD------------KVIGTIRSRTH 172 (824)
T ss_pred HHhCC-------------CCCeEEEEEeCChh------------hhhHHHHhhee
Confidence 99972 33445666665331 36668999984
No 150
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.07 E-value=4.5e-10 Score=103.33 Aligned_cols=142 Identities=25% Similarity=0.211 Sum_probs=88.7
Q ss_pred chhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc---CCceEEeCCCcccCCceEEEeec
Q 006051 318 GLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKD 394 (663)
Q Consensus 318 G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~~gl~~~~~~~ 394 (663)
|++.+...+...+... ...+++++||||+|||++++.+++.. ...++............. ..
T Consensus 2 ~~~~~~~~i~~~~~~~------------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~---~~ 66 (151)
T cd00009 2 GQEEAIEALREALELP------------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVV---AE 66 (151)
T ss_pred chHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHH---HH
Confidence 5566666666666441 12689999999999999999999876 344443322211110000 00
Q ss_pred Cch---hHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCcc
Q 006051 395 GGE---WMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSL 471 (663)
Q Consensus 395 ~~~---~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~ 471 (663)
... .............+++++||++.+.......+.+.++...... ..+.++.+|+++|+...
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-------~~~~~~~ii~~~~~~~~------- 132 (151)
T cd00009 67 LFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-------IDRENVRVIGATNRPLL------- 132 (151)
T ss_pred HhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-------ccCCCeEEEEecCcccc-------
Confidence 000 0111122233567999999999998878888888888754321 23467899999998631
Q ss_pred ccccCCChhhhhhhhhhhhh
Q 006051 472 SVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 472 ~~~~~l~~aLl~RFdli~~l 491 (663)
..+.+++.+||+..+.+
T Consensus 133 ---~~~~~~~~~r~~~~i~~ 149 (151)
T cd00009 133 ---GDLDRALYDRLDIRIVI 149 (151)
T ss_pred ---CCcChhHHhhhccEeec
Confidence 24556899999866544
No 151
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.06 E-value=8.5e-10 Score=114.90 Aligned_cols=98 Identities=16% Similarity=0.138 Sum_probs=72.7
Q ss_pred hhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC--CCCCCCCccccccCCCh
Q 006051 402 AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK--GHYDPNLSLSVNTTLSG 479 (663)
Q Consensus 402 ~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~--g~~d~~~~~~~~~~l~~ 479 (663)
.|.+..|++||+.++|+.+.+.+.+..|+.+++++.+.+. |....++.+..|||++|+. ..| .+.+...
T Consensus 229 ~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~--~~~~~~~~d~liia~sNe~e~~~~-------~~~k~~e 299 (361)
T smart00763 229 DGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGT--GGFAMIPIDGLIIAHSNESEWQRF-------KSNKKNE 299 (361)
T ss_pred cCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecC--CcccccccceEEEEeCCHHHHhhh-------hccccch
Confidence 3788889999999999999999999999999999998665 3333567788999999986 122 1223468
Q ss_pred hhhhhhhhhhhhcCCCChhHHHHHHHHHhh
Q 006051 480 PLLSRFDIVLVLLDTKNPEWDAVVSSHILA 509 (663)
Q Consensus 480 aLl~RFdli~~l~d~~~~~~d~~i~~~il~ 509 (663)
||++|+. ++.+....+-.....|-+..+.
T Consensus 300 af~dR~~-~i~vpY~l~~~~E~~Iy~k~~~ 328 (361)
T smart00763 300 ALLDRII-KVKVPYCLRVSEEAQIYEKLLR 328 (361)
T ss_pred hhhhceE-EEeCCCcCCHHHHHHHHHHHhc
Confidence 9999998 5555555555555555554443
No 152
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.06 E-value=4.7e-09 Score=105.09 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=108.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREH 424 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~ 424 (663)
.+++|+||||||||+||+++++... ..+....... .... .-....+++++|||++.++..
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~---------------~~~~--~~~~~~~~~liiDdi~~l~~~ 105 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS---------------PLLA--FDFDPEAELYAVDDVERLDDA 105 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH---------------hHHH--HhhcccCCEEEEeChhhcCch
Confidence 5899999999999999999998641 1222211100 0000 011235679999999999988
Q ss_pred hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh--hhhhhcCCCChhHHHH
Q 006051 425 DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTKNPEWDAV 502 (663)
Q Consensus 425 ~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~~~~~d~~ 502 (663)
.+..|...++...- .....++.+++... ....+.+.|.+||. ..+.+..+.++ .+..
T Consensus 106 ~~~~L~~~~~~~~~-----------~~~~~vl~~~~~~~---------~~~~l~~~L~sr~~~~~~i~l~pl~~~-~~~~ 164 (227)
T PRK08903 106 QQIALFNLFNRVRA-----------HGQGALLVAGPAAP---------LALPLREDLRTRLGWGLVYELKPLSDA-DKIA 164 (227)
T ss_pred HHHHHHHHHHHHHH-----------cCCcEEEEeCCCCH---------HhCCCCHHHHHHHhcCeEEEecCCCHH-HHHH
Confidence 88889888865220 11223444544320 01134467899984 55555333322 1211
Q ss_pred HHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHH
Q 006051 503 VSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIR 582 (663)
Q Consensus 503 i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lir 582 (663)
+ ++++ +. .....+++++.+.|.+. |+.++|+|..+++
T Consensus 165 ~---------------------------l~~~---~~-~~~v~l~~~al~~L~~~------------~~gn~~~l~~~l~ 201 (227)
T PRK08903 165 A---------------------------LKAA---AA-ERGLQLADEVPDYLLTH------------FRRDMPSLMALLD 201 (227)
T ss_pred H---------------------------HHHH---HH-HcCCCCCHHHHHHHHHh------------ccCCHHHHHHHHH
Confidence 1 1111 11 22467899998888864 7889999999999
Q ss_pred HHHHHHhccCCCccChhhHHHHH
Q 006051 583 LAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 583 la~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
.-.++|.... ..||...|.+++
T Consensus 202 ~l~~~~~~~~-~~i~~~~~~~~l 223 (227)
T PRK08903 202 ALDRYSLEQK-RPVTLPLLREML 223 (227)
T ss_pred HHHHHHHHhC-CCCCHHHHHHHH
Confidence 8766665554 578888887765
No 153
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.05 E-value=3.1e-09 Score=125.29 Aligned_cols=203 Identities=19% Similarity=0.132 Sum_probs=123.7
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC----------CceEEeCCCcc
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN----------RSVITTGLGST 383 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~----------~~~~~~~~~~~ 383 (663)
..++|.+...+.++-.|.. +...|++|+||||||||.+++.+|.... ..++....+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r------------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l 246 (821)
T CHL00095 179 DPVIGREKEIERVIQILGR------------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLL 246 (821)
T ss_pred CCCCCcHHHHHHHHHHHcc------------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHH
Confidence 4589998777777666643 2236899999999999999999998642 34444333222
Q ss_pred cCCceEEEeecCchhHhhhhhhh----hccCCeeecccccccCh--------hhHHhHHHHHHhceeeeeccCceeecCC
Q 006051 384 SAGLTVTAVKDGGEWMLEAGALV----LADGGLCCIDEFDSMRE--------HDRATIHEAMEQQTISVAKAGLVTTLST 451 (663)
Q Consensus 384 ~~gl~~~~~~~~~~~~~~~g~l~----~a~~gvl~iDEid~l~~--------~~~~~L~~~me~~~i~i~k~g~~~~~~~ 451 (663)
.+|. +..|+|...-..+. ...+.|+||||++.+-. +..+.|..++..|.+
T Consensus 247 ~ag~-----~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l------------- 308 (821)
T CHL00095 247 LAGT-----KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGEL------------- 308 (821)
T ss_pred hccC-----CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCc-------------
Confidence 1111 11244443332222 23456999999987632 234556666766654
Q ss_pred cEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHH
Q 006051 452 RTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAML 531 (663)
Q Consensus 452 ~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l 531 (663)
.+|||||+.. +...+...++|.+||..+ .+..+..++.. .+.+.+...... ...-.++.+.+
T Consensus 309 --~~IgaTt~~e-------y~~~ie~D~aL~rRf~~I-~v~ep~~~e~~-aILr~l~~~~e~-------~~~v~i~deal 370 (821)
T CHL00095 309 --QCIGATTLDE-------YRKHIEKDPALERRFQPV-YVGEPSVEETI-EILFGLRSRYEK-------HHNLSISDKAL 370 (821)
T ss_pred --EEEEeCCHHH-------HHHHHhcCHHHHhcceEE-ecCCCCHHHHH-HHHHHHHHHHHH-------HcCCCCCHHHH
Confidence 8999999851 111134457999999864 44343333333 333333322211 01112788889
Q ss_pred HHHHHHHHccCCCc-cCHHHHHHHHHHHHHHHhc
Q 006051 532 RRYIYFVKGYFKPI-LTKEAEKVISSYYQLQRRS 564 (663)
Q Consensus 532 ~~~i~~~r~~~~p~-ls~ea~~~l~~~y~~~r~~ 564 (663)
.....++.+++.-. +++.|.++|.......|..
T Consensus 371 ~~i~~ls~~yi~~r~lPdkaidlld~a~a~~~~~ 404 (821)
T CHL00095 371 EAAAKLSDQYIADRFLPDKAIDLLDEAGSRVRLI 404 (821)
T ss_pred HHHHHHhhccCccccCchHHHHHHHHHHHHHHhh
Confidence 98888888776543 6778899999887766553
No 154
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.04 E-value=3.8e-09 Score=115.04 Aligned_cols=222 Identities=17% Similarity=0.180 Sum_probs=137.8
Q ss_pred HHHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHh
Q 006051 291 KQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+.++++|+... ++++.|++.+.+.|-.++..+ |-.+-.||.||.|||||++||.+|+.
T Consensus 4 q~L~rKyRP~~-----------F~evvGQe~v~~~L~nal~~~-----------ri~hAYlfsG~RGvGKTt~Ari~Aka 61 (515)
T COG2812 4 QVLARKYRPKT-----------FDDVVGQEHVVKTLSNALENG-----------RIAHAYLFSGPRGVGKTTIARILAKA 61 (515)
T ss_pred HHHHHHhCccc-----------HHHhcccHHHHHHHHHHHHhC-----------cchhhhhhcCCCCcCchhHHHHHHHH
Confidence 34666665444 357899999999999999875 33367899999999999999999986
Q ss_pred cCCceEEeCCC--------cccCC-------ceEEEeecC---chhHhhhhhh-hhccCCeeecccccccChhhHHhHHH
Q 006051 371 SNRSVITTGLG--------STSAG-------LTVTAVKDG---GEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHE 431 (663)
Q Consensus 371 ~~~~~~~~~~~--------~~~~g-------l~~~~~~~~---~~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~ 431 (663)
+...--.++.. +...| +.++.-.+- .+..-+..-. +.+...|.+|||.++++....++|+.
T Consensus 62 lNC~~~~~~ePC~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLK 141 (515)
T COG2812 62 LNCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLK 141 (515)
T ss_pred hcCCCCCCCCcchhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhc
Confidence 54321011000 00111 011000000 1110011111 23456799999999999999999999
Q ss_pred HHHhceeeeeccCceeecCCcE-EEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhh
Q 006051 432 AMEQQTISVAKAGLVTTLSTRT-IIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAE 510 (663)
Q Consensus 432 ~me~~~i~i~k~g~~~~~~~~~-~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~ 510 (663)
.+|+- |..+ .|+|||++. ++++.++||+- .|.+
T Consensus 142 TLEEP-------------P~hV~FIlATTe~~-------------Kip~TIlSRcq-~f~f------------------- 175 (515)
T COG2812 142 TLEEP-------------PSHVKFILATTEPQ-------------KIPNTILSRCQ-RFDF------------------- 175 (515)
T ss_pred ccccC-------------ccCeEEEEecCCcC-------------cCchhhhhccc-cccc-------------------
Confidence 99874 3334 455666664 78889999983 2322
Q ss_pred cCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhc
Q 006051 511 GGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARL 590 (663)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l 590 (663)
..++.+.+..++++.-..-.-..+++|..+|.+. ..+++|...+++.-+.+...
T Consensus 176 -------------kri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~------------a~Gs~RDalslLDq~i~~~~- 229 (515)
T COG2812 176 -------------KRLDLEEIAKHLAAILDKEGINIEEDALSLIARA------------AEGSLRDALSLLDQAIAFGE- 229 (515)
T ss_pred -------------cCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHH------------cCCChhhHHHHHHHHHHccC-
Confidence 2345556666665554444445677777777654 24567888888775554433
Q ss_pred cCCCccChhhHHHHHHHHH
Q 006051 591 MFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 591 ~~~~~V~~~Dv~~Ai~l~~ 609 (663)
..|+.++|.....++.
T Consensus 230 ---~~It~~~v~~~lG~~~ 245 (515)
T COG2812 230 ---GEITLESVRDMLGLTD 245 (515)
T ss_pred ---CcccHHHHHHHhCCCC
Confidence 5777777776665543
No 155
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.04 E-value=3.4e-09 Score=116.89 Aligned_cols=206 Identities=18% Similarity=0.157 Sum_probs=114.3
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc--eE--EeCC--------Cc
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS--VI--TTGL--------GS 382 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~--~~--~~~~--------~~ 382 (663)
++.||+.++..+.-++..| +-.+.+||+||||+|||++|+.+++..... .. .++. ++
T Consensus 17 diiGq~~i~~~L~~~i~~~-----------~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g 85 (486)
T PRK14953 17 EVIGQEIVVRILKNAVKLQ-----------RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKG 85 (486)
T ss_pred HccChHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcC
Confidence 6889999999998888764 112346899999999999999999975421 00 0000 00
Q ss_pred ccCCceEE-EeecCchh---Hhh--hhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 383 TSAGLTVT-AVKDGGEW---MLE--AGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 383 ~~~gl~~~-~~~~~~~~---~~~--~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
+...+..- .....|.- .+. .... ..+...|++|||+++|+....++|+..|++. +..+.+
T Consensus 86 ~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEep-------------p~~~v~ 152 (486)
T PRK14953 86 SFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEP-------------PPRTIF 152 (486)
T ss_pred CCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcC-------------CCCeEE
Confidence 01111100 00000100 000 1111 1245679999999999999999999999863 233445
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
|.++|.. ..+.+++.+|+. .+.+.. ++.+.+..++
T Consensus 153 Il~tt~~------------~kl~~tI~SRc~-~i~f~~--------------------------------ls~~el~~~L 187 (486)
T PRK14953 153 ILCTTEY------------DKIPPTILSRCQ-RFIFSK--------------------------------PTKEQIKEYL 187 (486)
T ss_pred EEEECCH------------HHHHHHHHHhce-EEEcCC--------------------------------CCHHHHHHHH
Confidence 5555432 135568888885 333322 2333444444
Q ss_pred HHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 536 YFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
...-+...-.++++|.++|..+ ..+++|.+.+++..+.+.+ ...++.++|..++
T Consensus 188 ~~i~k~egi~id~~al~~La~~------------s~G~lr~al~~Ldkl~~~~----~~~It~~~V~~~l 241 (486)
T PRK14953 188 KRICNEEKIEYEEKALDLLAQA------------SEGGMRDAASLLDQASTYG----EGKVTIKVVEEFL 241 (486)
T ss_pred HHHHHHcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHHhc----CCCcCHHHHHHHh
Confidence 3221122334666777666654 1245666666665444332 3356666666543
No 156
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.03 E-value=2.4e-09 Score=126.06 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=118.2
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC----------CceEEeCCCc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN----------RSVITTGLGS 382 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~----------~~~~~~~~~~ 382 (663)
...++|++...+.++-.|.. |...|++|+||||||||++++.++.... ..++....+.
T Consensus 177 l~~vigr~~ei~~~i~iL~r------------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~ 244 (857)
T PRK10865 177 LDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGA 244 (857)
T ss_pred CCcCCCCHHHHHHHHHHHhc------------CCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhh
Confidence 34589998766666655543 2236899999999999999999998763 3333332222
Q ss_pred ccCCceEEEeecCchhHhhhhhh----hhc-cCCeeecccccccChh--------hHHhHHHHHHhceeeeeccCceeec
Q 006051 383 TSAGLTVTAVKDGGEWMLEAGAL----VLA-DGGLCCIDEFDSMREH--------DRATIHEAMEQQTISVAKAGLVTTL 449 (663)
Q Consensus 383 ~~~gl~~~~~~~~~~~~~~~g~l----~~a-~~gvl~iDEid~l~~~--------~~~~L~~~me~~~i~i~k~g~~~~~ 449 (663)
..+| .+..|+|......+ ..+ .+.|+||||++.+... ..+.|..+++.|.+
T Consensus 245 l~ag-----~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l----------- 308 (857)
T PRK10865 245 LVAG-----AKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGEL----------- 308 (857)
T ss_pred hhhc-----cchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCC-----------
Confidence 1111 11123333222211 112 3459999999998532 35556666666554
Q ss_pred CCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHH
Q 006051 450 STRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLA 529 (663)
Q Consensus 450 ~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 529 (663)
.+||||++.. ++.-+.+.++|.+||+.+. +.. |+.+....+.+.+...... ...-.++.+
T Consensus 309 ----~~IgaTt~~e-------~r~~~~~d~al~rRf~~i~-v~e-P~~~~~~~iL~~l~~~~e~-------~~~v~~~d~ 368 (857)
T PRK10865 309 ----HCVGATTLDE-------YRQYIEKDAALERRFQKVF-VAE-PSVEDTIAILRGLKERYEL-------HHHVQITDP 368 (857)
T ss_pred ----eEEEcCCCHH-------HHHHhhhcHHHHhhCCEEE-eCC-CCHHHHHHHHHHHhhhhcc-------CCCCCcCHH
Confidence 8999999862 1222456679999998644 433 3333322233333322211 112345666
Q ss_pred HHHHHHHHHHccCCC-ccCHHHHHHHHHHHHHHHh
Q 006051 530 MLRRYIYFVKGYFKP-ILTKEAEKVISSYYQLQRR 563 (663)
Q Consensus 530 ~l~~~i~~~r~~~~p-~ls~ea~~~l~~~y~~~r~ 563 (663)
.+...+..+.+++.. .+++.|.+++.......|.
T Consensus 369 a~~~a~~ls~ry~~~~~~pdkAi~LiD~aaa~~rl 403 (857)
T PRK10865 369 AIVAAATLSHRYIADRQLPDKAIDLIDEAASSIRM 403 (857)
T ss_pred HHHHHHHHhhccccCCCCChHHHHHHHHHhccccc
Confidence 676665556555533 4888898888776554443
No 157
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.01 E-value=1.2e-08 Score=114.73 Aligned_cols=140 Identities=19% Similarity=0.191 Sum_probs=86.5
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceE-Ee-C-----CC------
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI-TT-G-----LG------ 381 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~-~~-~-----~~------ 381 (663)
+++||+.+++.+.-++..| |-...+||+||+|+|||++|+.+++.+..... .. + ++
T Consensus 25 dliGq~~~v~~L~~~~~~g-----------ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~ 93 (598)
T PRK09111 25 DLIGQEAMVRTLTNAFETG-----------RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQ 93 (598)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHH
Confidence 7899999999998888765 23357999999999999999999986532110 00 0 00
Q ss_pred ----cccCCceE-EEeecCc-----hhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecC
Q 006051 382 ----STSAGLTV-TAVKDGG-----EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLS 450 (663)
Q Consensus 382 ----~~~~gl~~-~~~~~~~-----~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~ 450 (663)
.....+.. ..-...+ +........ ..+...|++|||++.|+....++|+..||+- +
T Consensus 94 ~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEeP-------------p 160 (598)
T PRK09111 94 AIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEP-------------P 160 (598)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhC-------------C
Confidence 00000100 0000001 110000000 2356789999999999999999999999972 3
Q ss_pred CcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 451 TRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 451 ~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
..+.+|.+|+.. .++.+++++|+. .+.+
T Consensus 161 ~~~~fIl~tte~------------~kll~tI~SRcq-~~~f 188 (598)
T PRK09111 161 PHVKFIFATTEI------------RKVPVTVLSRCQ-RFDL 188 (598)
T ss_pred CCeEEEEEeCCh------------hhhhHHHHhhee-EEEe
Confidence 445666666543 135567899984 3444
No 158
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=7.9e-10 Score=107.29 Aligned_cols=141 Identities=23% Similarity=0.278 Sum_probs=85.0
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhh-ccCCeeecccccccC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL-ADGGLCCIDEFDSMR 422 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~-a~~gvl~iDEid~l~ 422 (663)
+.++..||++||||||||.+||++|+.....|+..-.+. |....+-++...+-+.-.+.. ...+++|+||+|.+.
T Consensus 208 idppkgvllygppgtgktl~aravanrtdacfirvigse----lvqkyvgegarmvrelf~martkkaciiffdeidaig 283 (435)
T KOG0729|consen 208 IDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE----LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIG 283 (435)
T ss_pred CCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH----HHHHHhhhhHHHHHHHHHHhcccceEEEEeecccccc
Confidence 455678999999999999999999998888776632111 110000010011111111111 135799999999873
Q ss_pred -----------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhh
Q 006051 423 -----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVL 489 (663)
Q Consensus 423 -----------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~ 489 (663)
.+.|..+++.+.|-. |.. -..++-|+.|||++..+|| +|++ |.|-.+
T Consensus 284 garfddg~ggdnevqrtmleli~qld------gfd--prgnikvlmatnrpdtldp------------allrpgrldrkv 343 (435)
T KOG0729|consen 284 GARFDDGAGGDNEVQRTMLELINQLD------GFD--PRGNIKVLMATNRPDTLDP------------ALLRPGRLDRKV 343 (435)
T ss_pred CccccCCCCCcHHHHHHHHHHHHhcc------CCC--CCCCeEEEeecCCCCCcCH------------hhcCCcccccce
Confidence 346777888877532 111 1245578999999865554 7777 788766
Q ss_pred hhcCCCChhHHHHHHHHHhhhcCC
Q 006051 490 VLLDTKNPEWDAVVSSHILAEGGL 513 (663)
Q Consensus 490 ~l~d~~~~~~d~~i~~~il~~~~~ 513 (663)
.+ ..++-+- ..||++.|..
T Consensus 344 ef-~lpdleg----rt~i~kihak 362 (435)
T KOG0729|consen 344 EF-GLPDLEG----RTHIFKIHAK 362 (435)
T ss_pred ec-cCCcccc----cceeEEEecc
Confidence 55 2333221 3467777654
No 159
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.00 E-value=1.2e-09 Score=116.59 Aligned_cols=156 Identities=17% Similarity=0.173 Sum_probs=92.8
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc-------eEEeCCCcccC
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS-------VITTGLGSTSA 385 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~-------~~~~~~~~~~~ 385 (663)
..++++.+.....++.+|..+ .|++|+||||||||++|+.++...... .+.....-+..
T Consensus 174 l~d~~i~e~~le~l~~~L~~~--------------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIK--------------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcC--------------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 345666677777777777654 689999999999999999999865321 11111000000
Q ss_pred CceEEEeecCchhHhhhhhh----hh-----ccCCeeecccccccChhh-HHhHHHHHHhce------eeee--c-cCce
Q 006051 386 GLTVTAVKDGGEWMLEAGAL----VL-----ADGGLCCIDEFDSMREHD-RATIHEAMEQQT------ISVA--K-AGLV 446 (663)
Q Consensus 386 gl~~~~~~~~~~~~~~~g~l----~~-----a~~gvl~iDEid~l~~~~-~~~L~~~me~~~------i~i~--k-~g~~ 446 (663)
.+...............|.+ .. ..+.+++|||+++...+. ...++.+||.+. +.+. . .+..
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~ 319 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEER 319 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeecccccccc
Confidence 00000000001111223322 11 145799999999998654 677888888541 2111 1 1234
Q ss_pred eecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhh
Q 006051 447 TTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLV 490 (663)
Q Consensus 447 ~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~ 490 (663)
...|.++.||||+|..++ +. ..+..||++||..+-.
T Consensus 320 f~iP~Nl~IIgTMNt~Dr-----s~---~~lD~AlrRRF~fi~i 355 (459)
T PRK11331 320 FYVPENVYIIGLMNTADR-----SL---AVVDYALRRRFSFIDI 355 (459)
T ss_pred ccCCCCeEEEEecCcccc-----ch---hhccHHHHhhhheEEe
Confidence 577999999999998732 11 1477899999976443
No 160
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.00 E-value=2.9e-09 Score=104.81 Aligned_cols=115 Identities=22% Similarity=0.311 Sum_probs=84.2
Q ss_pred ccccccccccCCCchHHHHHHHHHHh------cCCceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCe
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKL------SNRSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGL 412 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~------~~~~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gv 412 (663)
|+..++||.||+|.|||.|+|.+..+ +...++..++......-..+.+++. |...-.+|.+-.|+||.
T Consensus 206 rsr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggm 285 (531)
T COG4650 206 RSRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGM 285 (531)
T ss_pred hccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCce
Confidence 44589999999999999999998764 3345555544332211111222221 44455688888999999
Q ss_pred eecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC
Q 006051 413 CCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 413 l~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
+|+|||..+..+.|..|+.++|+..+ ..-|.......++.+||.|-.
T Consensus 286 lfldeigelgadeqamllkaieekrf--~pfgsdr~v~sdfqliagtvr 332 (531)
T COG4650 286 LFLDEIGELGADEQAMLLKAIEEKRF--YPFGSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred EehHhhhhcCccHHHHHHHHHHhhcc--CCCCCccccccchHHhhhhHH
Confidence 99999999999999999999999876 345666666788888888865
No 161
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.00 E-value=1e-08 Score=112.30 Aligned_cols=140 Identities=21% Similarity=0.259 Sum_probs=85.3
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEe---CCCc--------c
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT---GLGS--------T 383 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~---~~~~--------~ 383 (663)
+|+|++.++..+.-.+..| +-...+||+||||+|||++|+.+++.....--.. .++. .
T Consensus 18 diiGq~~~v~~L~~~i~~~-----------~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~ 86 (451)
T PRK06305 18 EILGQDAVVAVLKNALRFN-----------RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISS 86 (451)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhc
Confidence 7899999999888877654 2224589999999999999999998653210000 0000 0
Q ss_pred cCCceEEEeecC---c-hhHhh-hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 384 SAGLTVTAVKDG---G-EWMLE-AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 384 ~~gl~~~~~~~~---~-~~~~~-~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
........+.+. | +.... ...+ ..++..|++|||++.|..+.++.|+..||+- +..+.
T Consensus 87 ~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep-------------~~~~~ 153 (451)
T PRK06305 87 GTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEP-------------PQHVK 153 (451)
T ss_pred CCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcC-------------CCCce
Confidence 000111111110 1 00000 0011 1256789999999999999999999999972 23445
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
+|.++|.. ..+.+++.+|+.. +.+
T Consensus 154 ~Il~t~~~------------~kl~~tI~sRc~~-v~f 177 (451)
T PRK06305 154 FFLATTEI------------HKIPGTILSRCQK-MHL 177 (451)
T ss_pred EEEEeCCh------------HhcchHHHHhceE-EeC
Confidence 66666543 2466789999964 344
No 162
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.00 E-value=2.1e-08 Score=107.89 Aligned_cols=134 Identities=16% Similarity=0.185 Sum_probs=82.6
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeec
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD 394 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~ 394 (663)
++.|++.+++.+.-.+..| +.+.++||+||||+|||++++.+++........... ............
T Consensus 18 ~iig~~~~~~~l~~~i~~~-----------~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~--~~~~~~~~~l~~ 84 (367)
T PRK14970 18 DVVGQSHITNTLLNAIENN-----------HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPN--EDFSFNIFELDA 84 (367)
T ss_pred hcCCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCC--CCCCcceEEecc
Confidence 7789999999988888664 223689999999999999999999875432111100 000011100100
Q ss_pred C-----chh---Hhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCC
Q 006051 395 G-----GEW---MLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHY 465 (663)
Q Consensus 395 ~-----~~~---~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~ 465 (663)
. .+. ..++... ..++..|++|||++.+....++.++..|++. +..+.+|.++|..
T Consensus 85 ~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~-------------~~~~~~Il~~~~~--- 148 (367)
T PRK14970 85 ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEP-------------PAHAIFILATTEK--- 148 (367)
T ss_pred ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCC-------------CCceEEEEEeCCc---
Confidence 0 010 0111111 1245679999999999998888898888752 2334555556532
Q ss_pred CCCCccccccCCChhhhhhhh
Q 006051 466 DPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 466 d~~~~~~~~~~l~~aLl~RFd 486 (663)
..+.+++.+|+.
T Consensus 149 ---------~kl~~~l~sr~~ 160 (367)
T PRK14970 149 ---------HKIIPTILSRCQ 160 (367)
T ss_pred ---------ccCCHHHHhcce
Confidence 245678999985
No 163
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=98.99 E-value=1.3e-09 Score=127.47 Aligned_cols=154 Identities=23% Similarity=0.201 Sum_probs=90.0
Q ss_pred ccCchhHHHHHHHHHHhCCcee-ecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
+|.|++.+|+.+.-.+...... .......+..+.++||+||||||||++++++++..+..++........... .
T Consensus 179 di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~-----~ 253 (733)
T TIGR01243 179 DIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKY-----Y 253 (733)
T ss_pred HhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhccc-----c
Confidence 5678887776664443321111 000112234557899999999999999999999988777654322111100 0
Q ss_pred cCchhHhh-hhhhh---hccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 394 DGGEWMLE-AGALV---LADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 394 ~~~~~~~~-~g~l~---~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
|+.... ...+. ...++|+||||+|.+... .+..|++.|+.-. -...+.+|+|
T Consensus 254 --g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~-----------~~~~vivI~a 320 (733)
T TIGR01243 254 --GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLK-----------GRGRVIVIGA 320 (733)
T ss_pred --cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccc-----------cCCCEEEEee
Confidence 111101 11111 224579999999987432 3445666665321 1245689999
Q ss_pred eCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhH
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEW 499 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~ 499 (663)
||+... +++++++ |||..+.+.. ++.+.
T Consensus 321 tn~~~~------------ld~al~r~gRfd~~i~i~~-P~~~~ 350 (733)
T TIGR01243 321 TNRPDA------------LDPALRRPGRFDREIVIRV-PDKRA 350 (733)
T ss_pred cCChhh------------cCHHHhCchhccEEEEeCC-cCHHH
Confidence 998743 3457776 9998887744 44443
No 164
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.99 E-value=1.8e-08 Score=114.45 Aligned_cols=124 Identities=17% Similarity=0.249 Sum_probs=76.0
Q ss_pred HHHHHhhcCCchhhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHh
Q 006051 291 KQFWSEFKDTPLKGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+.+|++|+...| .+|+||+.+++.+..++..| +-...+||+||||+|||++++.+++.
T Consensus 4 ~~l~~kyRP~~~-----------~eiiGq~~~~~~L~~~i~~~-----------~i~~a~Lf~Gp~G~GKTtlA~~lA~~ 61 (585)
T PRK14950 4 QVLYRKWRSQTF-----------AELVGQEHVVQTLRNAIAEG-----------RVAHAYLFTGPRGVGKTSTARILAKA 61 (585)
T ss_pred HHHHHHhCCCCH-----------HHhcCCHHHHHHHHHHHHhC-----------CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 456777765554 37899999999998888765 12245799999999999999999986
Q ss_pred cCCceE-EeC--CCc--------ccCCceEEEeec---CchhHhh--hhhh----hhccCCeeecccccccChhhHHhHH
Q 006051 371 SNRSVI-TTG--LGS--------TSAGLTVTAVKD---GGEWMLE--AGAL----VLADGGLCCIDEFDSMREHDRATIH 430 (663)
Q Consensus 371 ~~~~~~-~~~--~~~--------~~~gl~~~~~~~---~~~~~~~--~g~l----~~a~~gvl~iDEid~l~~~~~~~L~ 430 (663)
.....- ..+ ++. ...+.....+.. .+.-.++ ...+ ..++..|++|||++.|+.+..+.|+
T Consensus 62 l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLL 141 (585)
T PRK14950 62 VNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALL 141 (585)
T ss_pred hcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHH
Confidence 532110 000 000 000011100000 0100000 0111 1356789999999999999999999
Q ss_pred HHHHhc
Q 006051 431 EAMEQQ 436 (663)
Q Consensus 431 ~~me~~ 436 (663)
..||+-
T Consensus 142 k~LEep 147 (585)
T PRK14950 142 KTLEEP 147 (585)
T ss_pred HHHhcC
Confidence 999873
No 165
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=9.1e-10 Score=112.79 Aligned_cols=135 Identities=27% Similarity=0.305 Sum_probs=84.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC---chhHhhhhhhhhcc-CCeeecccccc---
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG---GEWMLEAGALVLAD-GGLCCIDEFDS--- 420 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~---~~~~~~~g~l~~a~-~gvl~iDEid~--- 420 (663)
.||||+||||||||++||-+|+-++-..-. -.|+..+.|-...+... -.|. ..+. |-++||||.|.
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~-mTGGDVAPlG~qaVTkiH~lFDWa------kkS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAI-MTGGDVAPLGAQAVTKIHKLFDWA------KKSRRGLLLFIDEADAFLC 457 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceeh-hcCCCccccchHHHHHHHHHHHHH------hhcccceEEEehhhHHHHH
Confidence 589999999999999999999876642211 11222222221111100 1121 1233 44789999986
Q ss_pred ------cChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCC
Q 006051 421 ------MREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDT 494 (663)
Q Consensus 421 ------l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~ 494 (663)
|+++.+.+|...+= +-|.. ..++.++.|||.+|.||. +.-+|||-++.+ +.
T Consensus 458 eRnktymSEaqRsaLNAlLf-------RTGdq---SrdivLvlAtNrpgdlDs------------AV~DRide~veF-pL 514 (630)
T KOG0742|consen 458 ERNKTYMSEAQRSALNALLF-------RTGDQ---SRDIVLVLATNRPGDLDS------------AVNDRIDEVVEF-PL 514 (630)
T ss_pred HhchhhhcHHHHHHHHHHHH-------Hhccc---ccceEEEeccCCccchhH------------HHHhhhhheeec-CC
Confidence 46666666665542 11211 346788899999988876 899999999988 55
Q ss_pred CChhHHHHHHHHHhhhcC
Q 006051 495 KNPEWDAVVSSHILAEGG 512 (663)
Q Consensus 495 ~~~~~d~~i~~~il~~~~ 512 (663)
|.++.+..+....++.+.
T Consensus 515 PGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 515 PGEEERFKLLNLYLNKYI 532 (630)
T ss_pred CChHHHHHHHHHHHHHHh
Confidence 666666666555565554
No 166
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.97 E-value=7.9e-09 Score=110.78 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=82.7
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceE----EeCCC------cc
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI----TTGLG------ST 383 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~----~~~~~------~~ 383 (663)
.++.|++.++..+.-++..| +.+..+||+||||+|||++++.+++.....-. .+|.- ..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----------~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~ 82 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----------RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINS 82 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 47899999999998888665 12245899999999999999999987542200 00000 00
Q ss_pred cCCceEEEeecC---c-----hhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 384 SAGLTVTAVKDG---G-----EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 384 ~~gl~~~~~~~~---~-----~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
........+... + +........ ..++..|++|||++.++....+.|+..+|+. +..+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~-------------~~~~~ 149 (355)
T TIGR02397 83 GSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEP-------------PEHVV 149 (355)
T ss_pred CCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCC-------------cccee
Confidence 000011111110 1 011111111 1245569999999999998899999998752 33456
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhhhhh
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd 486 (663)
+|.++|... .+.+++.+|+.
T Consensus 150 lIl~~~~~~------------~l~~~l~sr~~ 169 (355)
T TIGR02397 150 FILATTEPH------------KIPATILSRCQ 169 (355)
T ss_pred EEEEeCCHH------------HHHHHHHhhee
Confidence 666665431 34567888885
No 167
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=1.4e-08 Score=114.35 Aligned_cols=136 Identities=15% Similarity=0.166 Sum_probs=82.8
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce-E-----E----eCCCc--
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV-I-----T----TGLGS-- 382 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~-~-----~----~~~~~-- 382 (663)
+|+||+.++..+.-++..| |-.+.+||+||||+|||++|+.+++.+.-.. . . ..++.
T Consensus 17 eivGQe~i~~~L~~~i~~~-----------ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~ 85 (620)
T PRK14954 17 DITAQEHITHTIQNSLRMD-----------RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECE 85 (620)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCH
Confidence 7889999999988887665 2235599999999999999999998653310 0 0 01110
Q ss_pred ------ccCCceEEEeecC---c-hhHhh-hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCcee
Q 006051 383 ------TSAGLTVTAVKDG---G-EWMLE-AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVT 447 (663)
Q Consensus 383 ------~~~gl~~~~~~~~---~-~~~~~-~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~ 447 (663)
.+..+....+... + +.... ...+ ..++.-|++|||++.|+...+++|+..||+-
T Consensus 86 sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEeP----------- 154 (620)
T PRK14954 86 SCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEP----------- 154 (620)
T ss_pred HHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCC-----------
Confidence 0001111111110 0 00000 0111 2356679999999999999999999999972
Q ss_pred ecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh
Q 006051 448 TLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 448 ~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd 486 (663)
+..+.+|.+++.. ..+.+++.+|+.
T Consensus 155 --p~~tv~IL~t~~~------------~kLl~TI~SRc~ 179 (620)
T PRK14954 155 --PPHAIFIFATTEL------------HKIPATIASRCQ 179 (620)
T ss_pred --CCCeEEEEEeCCh------------hhhhHHHHhhce
Confidence 2233454444422 256678888884
No 168
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=98.96 E-value=1.1e-08 Score=107.78 Aligned_cols=130 Identities=22% Similarity=0.251 Sum_probs=83.4
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeec
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD 394 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~ 394 (663)
++.|++.++..+.-.+-.| +.+..+||+||||+|||++++++++.....++...... .. ...++
T Consensus 22 ~~~~~~~~~~~l~~~~~~~-----------~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~--~~--~~~i~- 85 (316)
T PHA02544 22 ECILPAADKETFKSIVKKG-----------RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD--CR--IDFVR- 85 (316)
T ss_pred HhcCcHHHHHHHHHHHhcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc--cc--HHHHH-
Confidence 6789999988877666443 11234455899999999999999987665554433221 10 00000
Q ss_pred CchhHhh-hhhh-hhccCCeeeccccccc-ChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCcc
Q 006051 395 GGEWMLE-AGAL-VLADGGLCCIDEFDSM-REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSL 471 (663)
Q Consensus 395 ~~~~~~~-~g~l-~~a~~gvl~iDEid~l-~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~ 471 (663)
..... .... ..+..+|++|||++.+ ..+.+..|...|+.. +.++.+|.++|...
T Consensus 86 --~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~-------------~~~~~~Ilt~n~~~-------- 142 (316)
T PHA02544 86 --NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAY-------------SKNCSFIITANNKN-------- 142 (316)
T ss_pred --HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhc-------------CCCceEEEEcCChh--------
Confidence 10000 0011 1246789999999999 666777888888752 34567888888642
Q ss_pred ccccCCChhhhhhhhh
Q 006051 472 SVNTTLSGPLLSRFDI 487 (663)
Q Consensus 472 ~~~~~l~~aLl~RFdl 487 (663)
.+.+++.+||..
T Consensus 143 ----~l~~~l~sR~~~ 154 (316)
T PHA02544 143 ----GIIEPLRSRCRV 154 (316)
T ss_pred ----hchHHHHhhceE
Confidence 466799999964
No 169
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.91 E-value=2e-08 Score=113.85 Aligned_cols=138 Identities=22% Similarity=0.242 Sum_probs=85.1
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEE----eCCCc-------
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT----TGLGS------- 382 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~----~~~~~------- 382 (663)
.++.|++.++..|.-++..+ |-..++||+||||+|||++|+++++.+...... ..++.
T Consensus 16 ~~liGq~~i~~~L~~~l~~~-----------rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i 84 (620)
T PRK14948 16 DELVGQEAIATTLKNALISN-----------RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAI 84 (620)
T ss_pred hhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHH
Confidence 37889999999988888764 223689999999999999999999975431100 01110
Q ss_pred -ccCCceEEEeec---Cc-----hhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCc
Q 006051 383 -TSAGLTVTAVKD---GG-----EWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTR 452 (663)
Q Consensus 383 -~~~gl~~~~~~~---~~-----~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~ 452 (663)
.........+.. .+ +........ ..+...|++|||+++|+.+.+++|+..||+- +..
T Consensus 85 ~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEeP-------------p~~ 151 (620)
T PRK14948 85 AAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEP-------------PPR 151 (620)
T ss_pred hcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcC-------------CcC
Confidence 000111101110 11 100000000 1245579999999999999999999999962 234
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh
Q 006051 453 TIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 453 ~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
+.+|.+||.. ..+.+++++|+..
T Consensus 152 tvfIL~t~~~------------~~llpTIrSRc~~ 174 (620)
T PRK14948 152 VVFVLATTDP------------QRVLPTIISRCQR 174 (620)
T ss_pred eEEEEEeCCh------------hhhhHHHHhheeE
Confidence 4566655532 1456789999854
No 170
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=98.91 E-value=5.6e-09 Score=123.49 Aligned_cols=202 Identities=16% Similarity=0.135 Sum_probs=117.3
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC----------ceEEeCCCcc
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR----------SVITTGLGST 383 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~----------~~~~~~~~~~ 383 (663)
..++|++...+.++-.|..+ ...|++|+||||||||++++.++..... .++....+..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~------------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l 240 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGAL 240 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHH
Confidence 35889987766666666442 2368899999999999999999986532 2332222111
Q ss_pred cCCceEEEeecCchhHhhhhhh-h---hc-cCCeeecccccccCh--------hhHHhHHHHHHhceeeeeccCceeecC
Q 006051 384 SAGLTVTAVKDGGEWMLEAGAL-V---LA-DGGLCCIDEFDSMRE--------HDRATIHEAMEQQTISVAKAGLVTTLS 450 (663)
Q Consensus 384 ~~gl~~~~~~~~~~~~~~~g~l-~---~a-~~gvl~iDEid~l~~--------~~~~~L~~~me~~~i~i~k~g~~~~~~ 450 (663)
.+| .+..|++....-.+ . .. .+.|+||||++.+.. +..+.|..+++.|.
T Consensus 241 ~a~-----~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~------------- 302 (852)
T TIGR03346 241 IAG-----AKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGE------------- 302 (852)
T ss_pred hhc-----chhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCc-------------
Confidence 100 01113332221111 1 11 356999999998852 12344444444443
Q ss_pred CcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHH
Q 006051 451 TRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAM 530 (663)
Q Consensus 451 ~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~ 530 (663)
+.+|||||+. .++..+.+.++|.+||..+ .+..+..++.-. +.+.+...... ...-.++.+.
T Consensus 303 --i~~IgaTt~~-------e~r~~~~~d~al~rRf~~i-~v~~p~~~~~~~-iL~~~~~~~e~-------~~~v~~~d~~ 364 (852)
T TIGR03346 303 --LHCIGATTLD-------EYRKYIEKDAALERRFQPV-FVDEPTVEDTIS-ILRGLKERYEV-------HHGVRITDPA 364 (852)
T ss_pred --eEEEEeCcHH-------HHHHHhhcCHHHHhcCCEE-EeCCCCHHHHHH-HHHHHHHHhcc-------ccCCCCCHHH
Confidence 4899999975 1222245668999999864 454443333333 33333322211 1223367778
Q ss_pred HHHHHHHHHccCCCc-cCHHHHHHHHHHHHHHHh
Q 006051 531 LRRYIYFVKGYFKPI-LTKEAEKVISSYYQLQRR 563 (663)
Q Consensus 531 l~~~i~~~r~~~~p~-ls~ea~~~l~~~y~~~r~ 563 (663)
+...+..+.+++.-. +++.|.++|.......|.
T Consensus 365 i~~~~~ls~~yi~~r~lPdkAidlld~a~a~~~~ 398 (852)
T TIGR03346 365 IVAAATLSHRYITDRFLPDKAIDLIDEAAARIRM 398 (852)
T ss_pred HHHHHHhccccccccCCchHHHHHHHHHHHHHHh
Confidence 888888887776553 778888888877665543
No 171
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.91 E-value=2.5e-08 Score=100.26 Aligned_cols=177 Identities=15% Similarity=0.124 Sum_probs=98.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC---c-eEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---S-VITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~---~-~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~ 423 (663)
.+++|+||||+|||+|++++++.+.. . .|.. .... ........ ..+ ..-.+++|||++.+..
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~-~~~~---------~~~~~~~~--~~~--~~~dlliiDdi~~~~~ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVP-LDKR---------AWFVPEVL--EGM--EQLSLVCIDNIECIAG 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE-HHHH---------hhhhHHHH--HHh--hhCCEEEEeChhhhcC
Confidence 57999999999999999998875432 1 1111 0000 00000000 001 1224899999999864
Q ss_pred h--hHHhHHHHH----HhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh--hhhhhcCCC
Q 006051 424 H--DRATIHEAM----EQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTK 495 (663)
Q Consensus 424 ~--~~~~L~~~m----e~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~ 495 (663)
+ .+..++.++ +.|.. ..++++++++..|. .+.+.|.||+. +++.+..+.
T Consensus 112 ~~~~~~~lf~l~n~~~e~g~~--------------~li~ts~~~p~~l~---------~~~~~L~SRl~~g~~~~l~~~~ 168 (235)
T PRK08084 112 DELWEMAIFDLYNRILESGRT--------------RLLITGDRPPRQLN---------LGLPDLASRLDWGQIYKLQPLS 168 (235)
T ss_pred CHHHHHHHHHHHHHHHHcCCC--------------eEEEeCCCChHHcC---------cccHHHHHHHhCCceeeecCCC
Confidence 3 334444444 33321 13444455553321 24478999996 666664433
Q ss_pred ChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHh
Q 006051 496 NPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVR 575 (663)
Q Consensus 496 ~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R 575 (663)
+++..+.+.++ +... .-.+++++.++|... .+.++|
T Consensus 169 ~~~~~~~l~~~-------------------------------a~~~-~~~l~~~v~~~L~~~------------~~~d~r 204 (235)
T PRK08084 169 DEEKLQALQLR-------------------------------ARLR-GFELPEDVGRFLLKR------------LDREMR 204 (235)
T ss_pred HHHHHHHHHHH-------------------------------HHHc-CCCCCHHHHHHHHHh------------hcCCHH
Confidence 33332222111 1111 346889998888876 345688
Q ss_pred HHHHHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 576 MLESLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 576 ~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
.+++++.... ++.+.-...||.+.+.+++.
T Consensus 205 ~l~~~l~~l~-~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 205 TLFMTLDQLD-RASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHHH-HHHHhcCCCCCHHHHHHHHc
Confidence 8888887753 34444345688888887764
No 172
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=98.91 E-value=4.1e-08 Score=105.68 Aligned_cols=233 Identities=16% Similarity=0.117 Sum_probs=124.0
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC---------ceEEeCCCccc
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---------SVITTGLGSTS 384 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~---------~~~~~~~~~~~ 384 (663)
+.+.|.+.-.+.|.-.+..... | ..+.+++++||||||||++++++.+.+.. .++...+....
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~-----~---~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~ 86 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILR-----G---SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILD 86 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHc-----C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCC
Confidence 3588988777666665542100 0 12257999999999999999999874321 12221211100
Q ss_pred C--Cce---EEEe-------ecCc---hhHhh--hhhhh-hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCce
Q 006051 385 A--GLT---VTAV-------KDGG---EWMLE--AGALV-LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLV 446 (663)
Q Consensus 385 ~--gl~---~~~~-------~~~~---~~~~~--~g~l~-~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~ 446 (663)
. .+. ...+ ...+ ..... ...+. .....|++|||+|.+....+..|...+.-...
T Consensus 87 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~-------- 158 (365)
T TIGR02928 87 TLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN-------- 158 (365)
T ss_pred CHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccc--------
Confidence 0 000 0000 0000 00000 01111 12245899999999953333334443321000
Q ss_pred eec-CCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh-hhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCC
Q 006051 447 TTL-STRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD-IVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTD 524 (663)
Q Consensus 447 ~~~-~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd-li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 524 (663)
... +..+.+|+++|..... ..+.+.+.+||. ..+.+..+
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~---------~~l~~~~~s~~~~~~i~f~p~------------------------------ 199 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFR---------ENLDPRVKSSLCEEEIIFPPY------------------------------ 199 (365)
T ss_pred cCCCCCeEEEEEEECCcchH---------hhcCHHHhccCCcceeeeCCC------------------------------
Confidence 011 2567889999875210 134557777875 22333222
Q ss_pred CCCHHHHHHHHHHHHc-cCC-CccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHH
Q 006051 525 IWPLAMLRRYIYFVKG-YFK-PILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAI 602 (663)
Q Consensus 525 ~~~~~~l~~~i~~~r~-~~~-p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~ 602 (663)
+.+.+..++...-. ... ..+++++.+++...... ..+.+|....+++.|...|..+.+..|+.+|+.
T Consensus 200 --~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~---------~~Gd~R~al~~l~~a~~~a~~~~~~~it~~~v~ 268 (365)
T TIGR02928 200 --DAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQ---------EHGDARKAIDLLRVAGEIAEREGAERVTEDHVE 268 (365)
T ss_pred --CHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 33333333322111 111 23677777766654321 124688888899988888887888899999999
Q ss_pred HHHHHHHhhh
Q 006051 603 TAILCIESSM 612 (663)
Q Consensus 603 ~Ai~l~~~s~ 612 (663)
.|+..+..+.
T Consensus 269 ~a~~~~~~~~ 278 (365)
T TIGR02928 269 KAQEKIEKDR 278 (365)
T ss_pred HHHHHHHHHH
Confidence 9987775444
No 173
>PRK06620 hypothetical protein; Validated
Probab=98.90 E-value=2.8e-08 Score=98.09 Aligned_cols=166 Identities=16% Similarity=0.169 Sum_probs=94.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
.+++|+||||+|||+|++++++.....+.. .. .. .. . ......++||||++.+.....-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~-~~------------~~-~~-----~--~~~~~d~lliDdi~~~~~~~lf 103 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK-DI------------FF-NE-----E--ILEKYNAFIIEDIENWQEPALL 103 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc-hh------------hh-ch-----h--HHhcCCEEEEeccccchHHHHH
Confidence 469999999999999999988765432211 00 00 00 0 1123468999999976432111
Q ss_pred hH-HHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh--hhhhcCCCChhHHHHHH
Q 006051 428 TI-HEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI--VLVLLDTKNPEWDAVVS 504 (663)
Q Consensus 428 ~L-~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl--i~~l~d~~~~~~d~~i~ 504 (663)
.+ ..+.|+|.. .+++++.++.. ..+ +.|+||+.- ++.+.. ++.+....+
T Consensus 104 ~l~N~~~e~g~~---------------ilits~~~p~~----------l~l-~~L~SRl~~gl~~~l~~-pd~~~~~~~- 155 (214)
T PRK06620 104 HIFNIINEKQKY---------------LLLTSSDKSRN----------FTL-PDLSSRIKSVLSILLNS-PDDELIKIL- 155 (214)
T ss_pred HHHHHHHhcCCE---------------EEEEcCCCccc----------cch-HHHHHHHhCCceEeeCC-CCHHHHHHH-
Confidence 12 222244432 56666655521 235 789999972 344422 222221111
Q ss_pred HHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHH
Q 006051 505 SHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLA 584 (663)
Q Consensus 505 ~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla 584 (663)
+++.+ + ...-.+++++.++|... .+.++|.++.++...
T Consensus 156 --------------------------l~k~~---~-~~~l~l~~ev~~~L~~~------------~~~d~r~l~~~l~~l 193 (214)
T PRK06620 156 --------------------------IFKHF---S-ISSVTISRQIIDFLLVN------------LPREYSKIIEILENI 193 (214)
T ss_pred --------------------------HHHHH---H-HcCCCCCHHHHHHHHHH------------ccCCHHHHHHHHHHH
Confidence 11111 1 11346889999888876 345688888888876
Q ss_pred HHHHhccCCCccChhhHHHHH
Q 006051 585 QAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 585 ~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
.+.|.... ..||...+.+++
T Consensus 194 ~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 194 NYFALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHHHHcC-CCCCHHHHHHHh
Confidence 65555443 457887777654
No 174
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=1e-08 Score=103.07 Aligned_cols=139 Identities=19% Similarity=0.283 Sum_probs=86.6
Q ss_pred cCCeeecccccccChh------------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccC
Q 006051 409 DGGLCCIDEFDSMREH------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTT 476 (663)
Q Consensus 409 ~~gvl~iDEid~l~~~------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~ 476 (663)
+.||+||||||++... .|.-|+..+|-.++ .+|.|...+ ..+.+|||-- |.- ..-..
T Consensus 250 ~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV-~TKyG~VkT--dHILFIasGA----Fh~----sKPSD 318 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTV-STKYGPVKT--DHILFIASGA----FHV----AKPSD 318 (444)
T ss_pred hcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCcee-ecccccccc--ceEEEEecCc----eec----CChhh
Confidence 5799999999997322 34446666665444 356665532 2345565432 211 11135
Q ss_pred CChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHc-cCCCccCHHHHHHHH
Q 006051 477 LSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKG-YFKPILTKEAEKVIS 555 (663)
Q Consensus 477 l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~-~~~p~ls~ea~~~l~ 555 (663)
|-|.|--||.+.+.+.....++..+++. . -....++.|.+..+- .+.-.|+++|.+.|.
T Consensus 319 LiPELQGRfPIRVEL~~Lt~~Df~rILt-----e---------------p~~sLikQY~aLlkTE~v~l~FtddaI~~iA 378 (444)
T COG1220 319 LIPELQGRFPIRVELDALTKEDFERILT-----E---------------PKASLIKQYKALLKTEGVELEFTDDAIKRIA 378 (444)
T ss_pred cChhhcCCCceEEEcccCCHHHHHHHHc-----C---------------cchHHHHHHHHHHhhcCeeEEecHHHHHHHH
Confidence 6788999999999886666555544432 1 124578888877763 356679999999998
Q ss_pred HHHHHHHhcccCCCccccHhHHHHHHH
Q 006051 556 SYYQLQRRSATQNAARTTVRMLESLIR 582 (663)
Q Consensus 556 ~~y~~~r~~~~~~~~~~t~R~Le~lir 582 (663)
......... ...+-.|.|-+++.
T Consensus 379 eiA~~vN~~----~ENIGARRLhTvlE 401 (444)
T COG1220 379 EIAYQVNEK----TENIGARRLHTVLE 401 (444)
T ss_pred HHHHHhccc----ccchhHHHHHHHHH
Confidence 775444332 23455777776664
No 175
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=98.88 E-value=7e-08 Score=105.00 Aligned_cols=230 Identities=16% Similarity=0.101 Sum_probs=121.9
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC-----CceEEeCCCcccCC--
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTSAG-- 386 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~-----~~~~~~~~~~~~~g-- 386 (663)
+.++|.+.-...+...+..+.. + ..+.+++++||||||||++++.+.+.+. ..++...+......
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~-----~---~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~ 101 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALR-----G---SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYA 101 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhC-----C---CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHH
Confidence 3467777665556555533211 0 1235799999999999999999987542 22222222111000
Q ss_pred ce---EEEeec-----Cc----hhHhh-hhhhhh-ccCCeeecccccccC-h---hhHHhHHHHHHhceeeeeccCceee
Q 006051 387 LT---VTAVKD-----GG----EWMLE-AGALVL-ADGGLCCIDEFDSMR-E---HDRATIHEAMEQQTISVAKAGLVTT 448 (663)
Q Consensus 387 l~---~~~~~~-----~~----~~~~~-~g~l~~-a~~gvl~iDEid~l~-~---~~~~~L~~~me~~~i~i~k~g~~~~ 448 (663)
+. ...+.. .+ +.... ...+.. ....|++|||+|.+. . +....|.+++++..
T Consensus 102 ~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~----------- 170 (394)
T PRK00411 102 IFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYP----------- 170 (394)
T ss_pred HHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhccC-----------
Confidence 00 000000 00 00000 000111 122589999999986 2 22233333333211
Q ss_pred cCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh-hhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCC
Q 006051 449 LSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI-VLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWP 527 (663)
Q Consensus 449 ~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl-i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 527 (663)
..++.+|+++|+.... ..+.+.+.+||.- .+.+..+..++....+..++
T Consensus 171 -~~~v~vI~i~~~~~~~---------~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~-------------------- 220 (394)
T PRK00411 171 -GARIGVIGISSDLTFL---------YILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV-------------------- 220 (394)
T ss_pred -CCeEEEEEEECCcchh---------hhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH--------------------
Confidence 1256899999975211 0134556666642 23332322222222222211
Q ss_pred HHHHHHHHHHHHccCC-CccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 528 LAMLRRYIYFVKGYFK-PILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 528 ~~~l~~~i~~~r~~~~-p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
+..+. -.+++++.+.+.+.... ..+.+|....+++.|...|.-+.+..|+.+|+..|+.
T Consensus 221 -----------~~~~~~~~~~~~~l~~i~~~~~~---------~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~ 280 (394)
T PRK00411 221 -----------EEGFYPGVVDDEVLDLIADLTAR---------EHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYE 280 (394)
T ss_pred -----------HhhcccCCCCHhHHHHHHHHHHH---------hcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 11111 24677888877776432 1245888888888888888888889999999999998
Q ss_pred HHHhhh
Q 006051 607 CIESSM 612 (663)
Q Consensus 607 l~~~s~ 612 (663)
-+..+.
T Consensus 281 ~~~~~~ 286 (394)
T PRK00411 281 KSEIVH 286 (394)
T ss_pred HHHHHH
Confidence 775443
No 176
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.1e-08 Score=96.71 Aligned_cols=125 Identities=24% Similarity=0.319 Sum_probs=80.1
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhc---cCCeeeccccccc
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLA---DGGLCCIDEFDSM 421 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a---~~gvl~iDEid~l 421 (663)
-.+..+||+||||||||.||+++++.....++....+ .|....+-+ |.. .....++.| .+.|+|.||||.+
T Consensus 179 aQPKGvlLygppgtGktLlaraVahht~c~firvsgs----elvqk~ige-gsr-mvrelfvmarehapsiifmdeidsi 252 (404)
T KOG0728|consen 179 AQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS----ELVQKYIGE-GSR-MVRELFVMAREHAPSIIFMDEIDSI 252 (404)
T ss_pred CCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH----HHHHHHhhh-hHH-HHHHHHHHHHhcCCceEeeeccccc
Confidence 3446799999999999999999999877766653211 111101111 111 111123333 4789999999998
Q ss_pred C-----------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhh
Q 006051 422 R-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIV 488 (663)
Q Consensus 422 ~-----------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli 488 (663)
. .+.|..+++.+.|- +|... ..++-+|.|||+..-+| +||++ |.|..
T Consensus 253 gs~r~e~~~ggdsevqrtmlellnql------dgfea--tknikvimatnridild------------~allrpgridrk 312 (404)
T KOG0728|consen 253 GSSRVESGSGGDSEVQRTMLELLNQL------DGFEA--TKNIKVIMATNRIDILD------------PALLRPGRIDRK 312 (404)
T ss_pred ccccccCCCCccHHHHHHHHHHHHhc------ccccc--ccceEEEEecccccccc------------HhhcCCCccccc
Confidence 3 44677788888753 22222 34567999999975444 47887 89988
Q ss_pred hhhcCCC
Q 006051 489 LVLLDTK 495 (663)
Q Consensus 489 ~~l~d~~ 495 (663)
+.++.+.
T Consensus 313 iefp~p~ 319 (404)
T KOG0728|consen 313 IEFPPPN 319 (404)
T ss_pred ccCCCCC
Confidence 8874433
No 177
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.84 E-value=7e-08 Score=108.88 Aligned_cols=140 Identities=14% Similarity=0.103 Sum_probs=88.3
Q ss_pred CeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhh
Q 006051 411 GLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLV 490 (663)
Q Consensus 411 gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~ 490 (663)
-|++|||||.+....+..|+.+++--.. ...++.+||.+|....- ..+.+.+.+||..-.+
T Consensus 871 ~IIILDEID~L~kK~QDVLYnLFR~~~~----------s~SKLiLIGISNdlDLp---------erLdPRLRSRLg~eeI 931 (1164)
T PTZ00112 871 SILIIDEIDYLITKTQKVLFTLFDWPTK----------INSKLVLIAISNTMDLP---------ERLIPRCRSRLAFGRL 931 (1164)
T ss_pred eEEEeehHhhhCccHHHHHHHHHHHhhc----------cCCeEEEEEecCchhcc---------hhhhhhhhhccccccc
Confidence 3899999999987777888887774221 13467899999974210 1334567777754211
Q ss_pred hcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCc
Q 006051 491 LLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAA 570 (663)
Q Consensus 491 l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~ 570 (663)
.. .+++.+.|+..+...-......++++|.+++++... ..
T Consensus 932 vF-------------------------------~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVA---------q~ 971 (1164)
T PTZ00112 932 VF-------------------------------SPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVA---------NV 971 (1164)
T ss_pred cC-------------------------------CCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhh---------hc
Confidence 11 233444444444332222233588889888887422 12
Q ss_pred cccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 571 RTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 571 ~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
.+.+|....++|.|-..+ ....|+++||.+|+.-++.+.
T Consensus 972 SGDARKALDILRrAgEik---egskVT~eHVrkAleeiE~sr 1010 (1164)
T PTZ00112 972 SGDIRKALQICRKAFENK---RGQKIVPRDITEATNQLFDSP 1010 (1164)
T ss_pred CCHHHHHHHHHHHHHhhc---CCCccCHHHHHHHHHHHHhhh
Confidence 356888888888876653 356899999999997765554
No 178
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.83 E-value=1.8e-07 Score=106.15 Aligned_cols=140 Identities=16% Similarity=0.198 Sum_probs=85.5
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEe---CCCc--------c
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT---GLGS--------T 383 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~---~~~~--------~ 383 (663)
+|+||+.++..+.-++..| +-.+.+||+||+|+|||++|+.+++......... .++. .
T Consensus 18 ~viGq~~~~~~L~~~i~~~-----------~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~ 86 (614)
T PRK14971 18 SVVGQEALTTTLKNAIATN-----------KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNE 86 (614)
T ss_pred HhcCcHHHHHHHHHHHHcC-----------CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhc
Confidence 7899999999998888765 1123489999999999999999998653110000 0000 0
Q ss_pred cCCceEEEeecC---chhHhh-----hhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 384 SAGLTVTAVKDG---GEWMLE-----AGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 384 ~~gl~~~~~~~~---~~~~~~-----~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
........+... +...+. +... ..++..|++|||++.|+.+.+++|+..||+- +..+.
T Consensus 87 ~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEep-------------p~~ti 153 (614)
T PRK14971 87 QRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEP-------------PSYAI 153 (614)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCC-------------CCCeE
Confidence 000111111100 000000 0000 1245679999999999999999999999962 33445
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
+|.+|+.. ..+.+++++|+.. +.+
T Consensus 154 fIL~tt~~------------~kIl~tI~SRc~i-v~f 177 (614)
T PRK14971 154 FILATTEK------------HKILPTILSRCQI-FDF 177 (614)
T ss_pred EEEEeCCc------------hhchHHHHhhhhe-eec
Confidence 66666532 2566789999854 444
No 179
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.82 E-value=9.2e-09 Score=110.34 Aligned_cols=156 Identities=18% Similarity=0.178 Sum_probs=91.2
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceE-EeCCC----------
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVI-TTGLG---------- 381 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~-~~~~~---------- 381 (663)
+.+|+||+.+++.+.-++..+....... ..+-.+.+||+||||+|||++|+.+++...-.-- ...++
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~--~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAA--GSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhcccccccc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Confidence 4578999999999988887753211111 1122456999999999999999999985422100 00000
Q ss_pred cccCCceEEEeec--C-----chhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcE
Q 006051 382 STSAGLTVTAVKD--G-----GEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRT 453 (663)
Q Consensus 382 ~~~~gl~~~~~~~--~-----~~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~ 453 (663)
.+...+......+ . .+..-....- ..+...|++|||++.|++..+++|+..||+.. +..+
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~------------~~~~ 149 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPP------------PRTV 149 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCC------------CCCe
Confidence 0011111000000 0 0111001000 12345699999999999999999999999732 1233
Q ss_pred EEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCC
Q 006051 454 IIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKN 496 (663)
Q Consensus 454 ~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~ 496 (663)
.|++|+|+. .+.++++||+- .+.+..++.
T Consensus 150 fIL~a~~~~-------------~llpTIrSRc~-~i~f~~~~~ 178 (394)
T PRK07940 150 WLLCAPSPE-------------DVLPTIRSRCR-HVALRTPSV 178 (394)
T ss_pred EEEEECChH-------------HChHHHHhhCe-EEECCCCCH
Confidence 666777754 56789999994 455544433
No 180
>PRK04195 replication factor C large subunit; Provisional
Probab=98.79 E-value=8.2e-08 Score=106.87 Aligned_cols=107 Identities=25% Similarity=0.274 Sum_probs=65.2
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeec
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD 394 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~ 394 (663)
++.|++.++..+.-.+-... .| +...++||+||||||||++|+++++..+..++....+... ....+
T Consensus 15 dlvg~~~~~~~l~~~l~~~~-----~g---~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r---~~~~i-- 81 (482)
T PRK04195 15 DVVGNEKAKEQLREWIESWL-----KG---KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQR---TADVI-- 81 (482)
T ss_pred HhcCCHHHHHHHHHHHHHHh-----cC---CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccc---cHHHH--
Confidence 67899988887766654321 11 1247899999999999999999999887666554321100 00000
Q ss_pred CchhHhhh---hhhhhccCCeeecccccccCh----hhHHhHHHHHHh
Q 006051 395 GGEWMLEA---GALVLADGGLCCIDEFDSMRE----HDRATIHEAMEQ 435 (663)
Q Consensus 395 ~~~~~~~~---g~l~~a~~gvl~iDEid~l~~----~~~~~L~~~me~ 435 (663)
....... ..+.-....+++|||+|.+.. ....+|+..++.
T Consensus 82 -~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~ 128 (482)
T PRK04195 82 -ERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK 128 (482)
T ss_pred -HHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc
Confidence 0111010 011112467999999999975 345667777763
No 181
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=8.9e-09 Score=106.59 Aligned_cols=114 Identities=22% Similarity=0.296 Sum_probs=78.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCc-ccCCceEEEeecC-chhHhh-hhhhhhccCCeeecccccccC--
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGS-TSAGLTVTAVKDG-GEWMLE-AGALVLADGGLCCIDEFDSMR-- 422 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~-~~~gl~~~~~~~~-~~~~~~-~g~l~~a~~gvl~iDEid~l~-- 422 (663)
.||||+||+|+|||.||+.+|+.+..|+..+.+.+ +.+|.....+..- .....+ .+-+..|..||+||||+|++.
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 79999999999999999999999999998877654 3344332111110 111111 234557889999999999985
Q ss_pred ------------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC
Q 006051 423 ------------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 423 ------------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
+..|.+|+..+|--.+.+...|..+..+.+...|-|+|-
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnI 357 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNI 357 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccce
Confidence 346888999998777777655554455555555555554
No 182
>PRK06893 DNA replication initiation factor; Validated
Probab=98.74 E-value=1.5e-07 Score=94.25 Aligned_cols=178 Identities=15% Similarity=0.165 Sum_probs=96.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcC----CceEEeCCCcccCCceEEEeecCchhHhhhhhh-hhccCCeeecccccccC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDSMR 422 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~----~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l-~~a~~gvl~iDEid~l~ 422 (663)
..++|+||||||||+|++++++.+. ...|... . . .... ....+ ...+..+++|||++.+.
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~-~------------~-~~~~-~~~~~~~~~~~dlLilDDi~~~~ 104 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPL-S------------K-SQYF-SPAVLENLEQQDLVCLDDLQAVI 104 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeH-H------------H-hhhh-hHHHHhhcccCCEEEEeChhhhc
Confidence 4579999999999999999997642 1122110 0 0 0000 00111 12345699999999975
Q ss_pred h--hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeC-CCCCCCCCCccccccCCChhhhhhhh--hhhhhcCCCCh
Q 006051 423 E--HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN-PKGHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTKNP 497 (663)
Q Consensus 423 ~--~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN-~~g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~~~ 497 (663)
. ..+..++..++...- . ....++.|+| ++..++ ...+.|.+|+. +++.+..+.++
T Consensus 105 ~~~~~~~~l~~l~n~~~~----~-------~~~illits~~~p~~l~---------~~~~~L~sRl~~g~~~~l~~pd~e 164 (229)
T PRK06893 105 GNEEWELAIFDLFNRIKE----Q-------GKTLLLISADCSPHALS---------IKLPDLASRLTWGEIYQLNDLTDE 164 (229)
T ss_pred CChHHHHHHHHHHHHHHH----c-------CCcEEEEeCCCChHHcc---------ccchhHHHHHhcCCeeeCCCCCHH
Confidence 3 234467776664220 0 1113344444 443222 12257888864 45555332222
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHH
Q 006051 498 EWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRML 577 (663)
Q Consensus 498 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~L 577 (663)
+....+.+ . +. .-.-.+++++.++|... .+.++|.|
T Consensus 165 ~~~~iL~~----------------------------~---a~-~~~l~l~~~v~~~L~~~------------~~~d~r~l 200 (229)
T PRK06893 165 QKIIVLQR----------------------------N---AY-QRGIELSDEVANFLLKR------------LDRDMHTL 200 (229)
T ss_pred HHHHHHHH----------------------------H---HH-HcCCCCCHHHHHHHHHh------------ccCCHHHH
Confidence 22222111 1 11 11346888988888865 34568888
Q ss_pred HHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 578 ESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 578 e~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
++++..-. .+.+.-...||...|.+++
T Consensus 201 ~~~l~~l~-~~~~~~~~~it~~~v~~~L 227 (229)
T PRK06893 201 FDALDLLD-KASLQAQRKLTIPFVKEIL 227 (229)
T ss_pred HHHHHHHH-HHHHhcCCCCCHHHHHHHh
Confidence 88887654 3444433468888888765
No 183
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.74 E-value=3.6e-08 Score=103.66 Aligned_cols=128 Identities=28% Similarity=0.329 Sum_probs=82.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccC---hh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR---EH 424 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~---~~ 424 (663)
..-||+||||||||++..|+|+.+...+|..... .+++..+ +.-=.+...+..|++|.+||.-- ..
T Consensus 236 RGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt---------~v~~n~d--Lr~LL~~t~~kSIivIEDIDcs~~l~~~ 304 (457)
T KOG0743|consen 236 RGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELT---------EVKLDSD--LRHLLLATPNKSILLIEDIDCSFDLRER 304 (457)
T ss_pred ccceeeCCCCCCHHHHHHHHHhhcCCceEEeeec---------cccCcHH--HHHHHHhCCCCcEEEEeecccccccccc
Confidence 4699999999999999999999999999875442 2333222 22222234577899999999841 10
Q ss_pred ---------------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhh
Q 006051 425 ---------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDI 487 (663)
Q Consensus 425 ---------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdl 487 (663)
....|+.++ +|........-.||.|||...++|| ||++ |.|+
T Consensus 305 ~~~~~~~~~~~~~~VTlSGLLNfi---------DGlwSscg~ERIivFTTNh~EkLDP------------ALlRpGRmDm 363 (457)
T KOG0743|consen 305 RKKKKENFEGDLSRVTLSGLLNFL---------DGLWSSCGDERIIVFTTNHKEKLDP------------ALLRPGRMDM 363 (457)
T ss_pred cccccccccCCcceeehHHhhhhh---------ccccccCCCceEEEEecCChhhcCH------------hhcCCCccee
Confidence 111233332 2333332223378899998866655 9999 9999
Q ss_pred hhhhcCCCChhHHHHHHHHHh
Q 006051 488 VLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 488 i~~l~d~~~~~~d~~i~~~il 508 (663)
++.+.. -..+.-+.++...+
T Consensus 364 hI~mgy-Ctf~~fK~La~nYL 383 (457)
T KOG0743|consen 364 HIYMGY-CTFEAFKTLASNYL 383 (457)
T ss_pred EEEcCC-CCHHHHHHHHHHhc
Confidence 999844 44444444554444
No 184
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.73 E-value=1.6e-08 Score=92.95 Aligned_cols=105 Identities=24% Similarity=0.362 Sum_probs=69.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCc---eEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS---VITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREH 424 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~---~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~ 424 (663)
.+|||+|+|||||+.+|++++....+. ++...+.. .....+..+.+|++||+|++.++++
T Consensus 22 ~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~-----------------~~~~~l~~a~~gtL~l~~i~~L~~~ 84 (138)
T PF14532_consen 22 SPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCAS-----------------LPAELLEQAKGGTLYLKNIDRLSPE 84 (138)
T ss_dssp S-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHC-----------------TCHHHHHHCTTSEEEEECGCCS-HH
T ss_pred CcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhh-----------------CcHHHHHHcCCCEEEECChHHCCHH
Confidence 789999999999999999999987652 21111110 0122344578999999999999999
Q ss_pred hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh
Q 006051 425 DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 425 ~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd 486 (663)
.|..|.+++++.. ..++++|+++...- ........+.+.|..||.
T Consensus 85 ~Q~~L~~~l~~~~------------~~~~RlI~ss~~~l-----~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 85 AQRRLLDLLKRQE------------RSNVRLIASSSQDL-----EELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp HHHHHHHHHHHCT------------TTTSEEEEEECC-C-----CCHHHHSTHHHHHHHHCS
T ss_pred HHHHHHHHHHhcC------------CCCeEEEEEeCCCH-----HHHhhccchhHHHHHHhC
Confidence 9999999998732 23457888887640 011122344456666665
No 185
>PRK09087 hypothetical protein; Validated
Probab=98.71 E-value=3.3e-07 Score=91.33 Aligned_cols=175 Identities=14% Similarity=0.148 Sum_probs=97.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
..++|+||+|+|||+|++++++.....++... . .....+.....+.++|||++.++. .+.
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~-----------------~--~~~~~~~~~~~~~l~iDDi~~~~~-~~~ 104 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPN-----------------E--IGSDAANAAAEGPVLIEDIDAGGF-DET 104 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEEecHH-----------------H--cchHHHHhhhcCeEEEECCCCCCC-CHH
Confidence 45999999999999999998875432222110 0 011111122347899999998754 355
Q ss_pred hHHHHHHhceeeeeccCceeecCCcE-EEEEeeCCCCCCCCCCccccccCCChhhhhhhh--hhhhhcCCCChhHHHHHH
Q 006051 428 TIHEAMEQQTISVAKAGLVTTLSTRT-IIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTKNPEWDAVVS 504 (663)
Q Consensus 428 ~L~~~me~~~i~i~k~g~~~~~~~~~-~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~~~~~d~~i~ 504 (663)
.++..++.-. .... .+++++.++..|. ...+.|.|||. +++.+..+.++.....+.
T Consensus 105 ~lf~l~n~~~------------~~g~~ilits~~~p~~~~---------~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~ 163 (226)
T PRK09087 105 GLFHLINSVR------------QAGTSLLMTSRLWPSSWN---------VKLPDLKSRLKAATVVEIGEPDDALLSQVIF 163 (226)
T ss_pred HHHHHHHHHH------------hCCCeEEEECCCChHHhc---------cccccHHHHHhCCceeecCCCCHHHHHHHHH
Confidence 6666654321 1111 4444444443322 12357999996 555553322222222111
Q ss_pred HHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHH
Q 006051 505 SHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLA 584 (663)
Q Consensus 505 ~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla 584 (663)
+.+ +...-.+++++.++|.+.. ..++|.++.++..-
T Consensus 164 ----------------------------~~~----~~~~~~l~~ev~~~La~~~------------~r~~~~l~~~l~~L 199 (226)
T PRK09087 164 ----------------------------KLF----ADRQLYVDPHVVYYLVSRM------------ERSLFAAQTIVDRL 199 (226)
T ss_pred ----------------------------HHH----HHcCCCCCHHHHHHHHHHh------------hhhHHHHHHHHHHH
Confidence 111 1123468899888888763 24577777766554
Q ss_pred HHHHhccCCCccChhhHHHHHHHH
Q 006051 585 QAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 585 ~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
.+.|.... ..+|...+.+++..+
T Consensus 200 ~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 200 DRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHhC-CCCCHHHHHHHHHhh
Confidence 55555444 457888887776543
No 186
>COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=3.1e-07 Score=103.26 Aligned_cols=175 Identities=22% Similarity=0.158 Sum_probs=120.8
Q ss_pred hhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeecc-----C---ceeecCCcEEEEEeeCCCCCCCCC
Q 006051 397 EWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKA-----G---LVTTLSTRTIIFGATNPKGHYDPN 468 (663)
Q Consensus 397 ~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~-----g---~~~~~~~~~~iiaatN~~g~~d~~ 468 (663)
....++|++..|++|||||||+..|....+..++.+|.++...++-. | ..-..|.++.++++.|+...+
T Consensus 213 ~~~i~pGaVHkAngGVLiIdei~lL~~~~~w~~LKa~~~k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~--- 289 (647)
T COG1067 213 HIRVKPGAVHKANGGVLIIDEIGLLAQPLQWKLLKALLDKEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLE--- 289 (647)
T ss_pred cccccCcccccccCcEEEEEhhhhhCcHHHHHHHHHHHhccccccCcCccccCcccCCCCcccceEEEeeCCHHHHH---
Confidence 45577999999999999999999999888999999998875544311 1 223457899999999985211
Q ss_pred CccccccCCChhhhhhhhh---hhhhcCCCC--hhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHcc-C
Q 006051 469 LSLSVNTTLSGPLLSRFDI---VLVLLDTKN--PEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGY-F 542 (663)
Q Consensus 469 ~~~~~~~~l~~aLl~RFdl---i~~l~d~~~--~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~-~ 542 (663)
.+.+++.+|.+. ...+.+... ++...+. +..|.....+. -
T Consensus 290 -------~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~---------------------------~~~~~q~v~~d~~ 335 (647)
T COG1067 290 -------DLHEPDRSRIEGFGYEAEFEDTMPITDANRSKL---------------------------VQFYVQELARDGN 335 (647)
T ss_pred -------hhcccCHHHHhhcceEEEEcCCCCCChHHHHHH---------------------------HHHHHHHHHhcCC
Confidence 122344444433 233433222 2222222 22333333222 3
Q ss_pred CCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHh
Q 006051 543 KPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIES 610 (663)
Q Consensus 543 ~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~ 610 (663)
-|.++.+|.+.|..+ ..|..+..+..+..+|.|-.|+|.|--.|+...++.++.+|+.+|+..-+.
T Consensus 336 ip~~~~~Av~~li~~--a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~~~~ 401 (647)
T COG1067 336 IPHLDKDAVEELIRE--AARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQKREL 401 (647)
T ss_pred CCCCCHHHHHHHHHH--HHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHhhhh
Confidence 578888988888776 345555566788999999999999999999999999999999999977433
No 187
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=1.3e-07 Score=103.18 Aligned_cols=164 Identities=20% Similarity=0.190 Sum_probs=94.1
Q ss_pred cccCchh----HHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceE
Q 006051 314 PQVFGLF----TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (663)
Q Consensus 314 p~i~G~~----~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~ 389 (663)
+++.|.. .++..+.+.|... ........+.+.++|++||||||||.+++++++....-++.....+....
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~---~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k--- 257 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHP---ALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISK--- 257 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcch---hhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHh---
Confidence 4555544 3445555555432 22223446777899999999999999999999987754544322111000
Q ss_pred EEeecCchhHhh-h--hhhhhccCCeeecccccccCh----------hhHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 390 TAVKDGGEWMLE-A--GALVLADGGLCCIDEFDSMRE----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 390 ~~~~~~~~~~~~-~--g~l~~a~~gvl~iDEid~l~~----------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
.-+..+..+. + -+...+.+.++||||+|.+-+ .....|+.+|+.-. -..++.++
T Consensus 258 --~~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~-----------~~~~vivl 324 (693)
T KOG0730|consen 258 --FPGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK-----------PDAKVIVL 324 (693)
T ss_pred --cccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc-----------CcCcEEEE
Confidence 0011111000 1 111112378999999999864 23345666665321 12566899
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhh-hhhhhhhhcCCCChhHHHHHHHHHhh
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLS-RFDIVLVLLDTKNPEWDAVVSSHILA 509 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~-RFdli~~l~d~~~~~~d~~i~~~il~ 509 (663)
+|+|.+. .|.+++++ |||.-+.+.- |+..-+..+.+.+.+
T Consensus 325 ~atnrp~------------sld~alRRgRfd~ev~Igi-P~~~~RldIl~~l~k 365 (693)
T KOG0730|consen 325 AATNRPD------------SLDPALRRGRFDREVEIGI-PGSDGRLDILRVLTK 365 (693)
T ss_pred EecCCcc------------ccChhhhcCCCcceeeecC-CCchhHHHHHHHHHH
Confidence 9999874 34457886 9998887744 443333334444433
No 188
>PRK08727 hypothetical protein; Validated
Probab=98.69 E-value=5.1e-07 Score=90.61 Aligned_cols=176 Identities=16% Similarity=0.123 Sum_probs=96.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC----ceEEeCCCcccCCceEEEeecCchhHhhhhhh-hhccCCeeecccccccC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDSMR 422 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~----~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l-~~a~~gvl~iDEid~l~ 422 (663)
..++|+|++|||||+|+++++..+.. ..|.. .. .+. +.. ...+ ...+..+++|||++.+.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~-~~----~~~-------~~~---~~~~~~l~~~dlLiIDDi~~l~ 106 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP-LQ----AAA-------GRL---RDALEALEGRSLVALDGLESIA 106 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe-HH----Hhh-------hhH---HHHHHHHhcCCEEEEeCccccc
Confidence 35999999999999999998765332 11111 00 000 000 0111 12234599999999986
Q ss_pred --hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC-CCCCCCCCccccccCCChhhhhhh--hhhhhhcCCCCh
Q 006051 423 --EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP-KGHYDPNLSLSVNTTLSGPLLSRF--DIVLVLLDTKNP 497 (663)
Q Consensus 423 --~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~-~g~~d~~~~~~~~~~l~~aLl~RF--dli~~l~d~~~~ 497 (663)
+..+..++..++...- ....+|.|+|. +..|. .+.+.|.||| .+++.+..+.++
T Consensus 107 ~~~~~~~~lf~l~n~~~~------------~~~~vI~ts~~~p~~l~---------~~~~dL~SRl~~~~~~~l~~~~~e 165 (233)
T PRK08727 107 GQREDEVALFDFHNRARA------------AGITLLYTARQMPDGLA---------LVLPDLRSRLAQCIRIGLPVLDDV 165 (233)
T ss_pred CChHHHHHHHHHHHHHHH------------cCCeEEEECCCChhhhh---------hhhHHHHHHHhcCceEEecCCCHH
Confidence 3345567777665321 12246666664 33332 2446899998 445555333322
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHH-HHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhH
Q 006051 498 EWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYF-VKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRM 576 (663)
Q Consensus 498 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~-~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~ 576 (663)
+ +..++.. ++.. .-.+++++.+.|.... +.+.|.
T Consensus 166 ~--------------------------------~~~iL~~~a~~~-~l~l~~e~~~~La~~~------------~rd~r~ 200 (233)
T PRK08727 166 A--------------------------------RAAVLRERAQRR-GLALDEAAIDWLLTHG------------ERELAG 200 (233)
T ss_pred H--------------------------------HHHHHHHHHHHc-CCCCCHHHHHHHHHhC------------CCCHHH
Confidence 2 2222221 2211 3357888888877652 234666
Q ss_pred HHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 577 LESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 577 Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
+.+++....+.+.... ..+|...+.+++
T Consensus 201 ~l~~L~~l~~~~~~~~-~~it~~~~~~~l 228 (233)
T PRK08727 201 LVALLDRLDRESLAAK-RRVTVPFLRRVL 228 (233)
T ss_pred HHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Confidence 6666665543333333 357777776654
No 189
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.69 E-value=3.2e-07 Score=107.15 Aligned_cols=149 Identities=19% Similarity=0.320 Sum_probs=113.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccC--CceEEEeec-CchhHhhhhhhhhc--cCCeeecccccccC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA--GLTVTAVKD-GGEWMLEAGALVLA--DGGLCCIDEFDSMR 422 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~--gl~~~~~~~-~~~~~~~~g~l~~a--~~gvl~iDEid~l~ 422 (663)
.++|+.||+.+|||.+..++|+..++.++..+...... ....+.+.+ .|...++.|.++.| .|--+++||++..+
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNLAp 968 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNLAP 968 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeeccccCc
Confidence 79999999999999999999999999998876554321 122233333 36677788998866 67789999999999
Q ss_pred hhhHHhHHHHHHh-ceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHH
Q 006051 423 EHDRATIHEAMEQ-QTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDA 501 (663)
Q Consensus 423 ~~~~~~L~~~me~-~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~ 501 (663)
.+...+|.+.+++ +.+.|........-..++.++||-||+|-|.- ...++.|++.|| +-+++.|.+..+...
T Consensus 969 TDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgG------RK~LSrAFRNRF-lE~hFddipedEle~ 1041 (4600)
T COG5271 969 TDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGG------RKGLSRAFRNRF-LEMHFDDIPEDELEE 1041 (4600)
T ss_pred HHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccc------hHHHHHHHHhhh-HhhhcccCcHHHHHH
Confidence 9999999999975 66777766666666789999999999976532 236888999999 455566666666544
Q ss_pred HH
Q 006051 502 VV 503 (663)
Q Consensus 502 ~i 503 (663)
++
T Consensus 1042 IL 1043 (4600)
T COG5271 1042 IL 1043 (4600)
T ss_pred HH
Confidence 43
No 190
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.5e-07 Score=99.76 Aligned_cols=154 Identities=18% Similarity=0.191 Sum_probs=91.9
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC-------ceE-EeCCC---
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-------SVI-TTGLG--- 381 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~-------~~~-~~~~~--- 381 (663)
...++||+.++..+.-++..| |.++.+||+||+|+|||++++.+++.... +.. ...++
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~g-----------rl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~ 90 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREG-----------KLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASP 90 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcC-----------CCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCH
Confidence 447899999999999999876 33456999999999999999999986432 110 00000
Q ss_pred -------cccCCce-EEE---eec----C--c-hhHhh-hhhhhh-c---cCCeeecccccccChhhHHhHHHHHHhcee
Q 006051 382 -------STSAGLT-VTA---VKD----G--G-EWMLE-AGALVL-A---DGGLCCIDEFDSMREHDRATIHEAMEQQTI 438 (663)
Q Consensus 382 -------~~~~gl~-~~~---~~~----~--~-~~~~~-~g~l~~-a---~~gvl~iDEid~l~~~~~~~L~~~me~~~i 438 (663)
.+..++. ... .+. . + +..-+ ...+.. + ..-|++|||++.|+....++|+..||+-
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEp-- 168 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEP-- 168 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcC--
Confidence 0011111 100 000 0 0 00001 111111 1 2249999999999999999999999863
Q ss_pred eeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHH
Q 006051 439 SVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVV 503 (663)
Q Consensus 439 ~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i 503 (663)
+.++.+|..++..+ .+.++++||+ ..+.+..+..++....+
T Consensus 169 -----------p~~~~fiLit~~~~------------~llptIrSRc-~~i~l~pl~~~~~~~~L 209 (351)
T PRK09112 169 -----------PARALFILISHSSG------------RLLPTIRSRC-QPISLKPLDDDELKKAL 209 (351)
T ss_pred -----------CCCceEEEEECChh------------hccHHHHhhc-cEEEecCCCHHHHHHHH
Confidence 22334444444332 4457899999 46666555544444333
No 191
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.68 E-value=6.4e-08 Score=106.88 Aligned_cols=192 Identities=17% Similarity=0.181 Sum_probs=102.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC-----ceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR-----SVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR 422 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~-----~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~ 422 (663)
.+++|+||||+|||+|++++++.+.. .++..........+. ..++......+ .. ......+++|||++.+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~dlLiiDDi~~l~ 224 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV-NALRNNTMEEF-KE--KYRSVDVLLIDDIQFLA 224 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HHHHcCcHHHH-HH--HHhcCCEEEEehhhhhc
Confidence 45999999999999999999986422 122111000000000 00000000000 00 11245699999999985
Q ss_pred hh--hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh--hhhhhcCCCChh
Q 006051 423 EH--DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTKNPE 498 (663)
Q Consensus 423 ~~--~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~~~~ 498 (663)
.. .+..++..++...- .| ...++++..++..+ ..+.+.|.+||. +++.+ .+++.+
T Consensus 225 ~~~~~~~~l~~~~n~l~~----~~-------~~iiits~~~p~~l---------~~l~~~l~SRl~~gl~v~i-~~pd~~ 283 (450)
T PRK00149 225 GKERTQEEFFHTFNALHE----AG-------KQIVLTSDRPPKEL---------PGLEERLRSRFEWGLTVDI-EPPDLE 283 (450)
T ss_pred CCHHHHHHHHHHHHHHHH----CC-------CcEEEECCCCHHHH---------HHHHHHHHhHhcCCeeEEe-cCCCHH
Confidence 43 34556665543210 01 11344444443211 124568999996 45555 334433
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHH
Q 006051 499 WDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLE 578 (663)
Q Consensus 499 ~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le 578 (663)
....+.+.... .....+++++.++|... ...++|.|+
T Consensus 284 ~r~~il~~~~~-------------------------------~~~~~l~~e~l~~ia~~------------~~~~~R~l~ 320 (450)
T PRK00149 284 TRIAILKKKAE-------------------------------EEGIDLPDEVLEFIAKN------------ITSNVRELE 320 (450)
T ss_pred HHHHHHHHHHH-------------------------------HcCCCCCHHHHHHHHcC------------cCCCHHHHH
Confidence 32222221111 11345778877777754 345788888
Q ss_pred HHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 579 SLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 579 ~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
.++....+.|.+..+ .++.+.+.+++.-+
T Consensus 321 ~~l~~l~~~~~~~~~-~it~~~~~~~l~~~ 349 (450)
T PRK00149 321 GALNRLIAYASLTGK-PITLELAKEALKDL 349 (450)
T ss_pred HHHHHHHHHHHhhCC-CCCHHHHHHHHHHh
Confidence 888888888877654 47888888877654
No 192
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.67 E-value=2.2e-07 Score=101.63 Aligned_cols=184 Identities=13% Similarity=0.192 Sum_probs=98.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecCchhHhhhhh---h--hhccCCeeeccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGA---L--VLADGGLCCIDEFD 419 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~---l--~~a~~gvl~iDEid 419 (663)
.+++|+||||+|||+|++++++.+. ..++.... ..+.. ... ..+..|. + ......+++|||++
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~----~~f~~-~~~----~~l~~~~~~~f~~~~~~~dvLiIDDiq 212 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS----ELFTE-HLV----SAIRSGEMQRFRQFYRNVDALFIEDIE 212 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH----HHHHH-HHH----HHHhcchHHHHHHHcccCCEEEEcchh
Confidence 4699999999999999999998542 12211100 00000 000 0000111 1 12345799999999
Q ss_pred ccCh--hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeC-CCCCCCCCCccccccCCChhhhhhhh--hhhhhcCC
Q 006051 420 SMRE--HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN-PKGHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDT 494 (663)
Q Consensus 420 ~l~~--~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN-~~g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~ 494 (663)
.+.. ..+..++..++...- .| . .+|.|+| ++..+ ..+.+.|.+||. +++.+..+
T Consensus 213 ~l~~k~~~qeelf~l~N~l~~----~~-------k-~IIlts~~~p~~l---------~~l~~rL~SR~~~Gl~~~l~~p 271 (445)
T PRK12422 213 VFSGKGATQEEFFHTFNSLHT----EG-------K-LIVISSTCAPQDL---------KAMEERLISRFEWGIAIPLHPL 271 (445)
T ss_pred hhcCChhhHHHHHHHHHHHHH----CC-------C-cEEEecCCCHHHH---------hhhHHHHHhhhcCCeEEecCCC
Confidence 9864 345566666543210 11 1 3445554 33111 135578999996 66655333
Q ss_pred CChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccH
Q 006051 495 KNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTV 574 (663)
Q Consensus 495 ~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~ 574 (663)
..++... ++..........+++++.++|...+ ..++
T Consensus 272 d~e~r~~--------------------------------iL~~k~~~~~~~l~~evl~~la~~~------------~~di 307 (445)
T PRK12422 272 TKEGLRS--------------------------------FLERKAEALSIRIEETALDFLIEAL------------SSNV 307 (445)
T ss_pred CHHHHHH--------------------------------HHHHHHHHcCCCCCHHHHHHHHHhc------------CCCH
Confidence 2222211 1111111123467778777766542 3457
Q ss_pred hHHHHHHHHH---HHHHhccCCCccChhhHHHHHH
Q 006051 575 RMLESLIRLA---QAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 575 R~Le~lirla---~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
|.|+..+... .|.+.+..+ .++.+++.+++.
T Consensus 308 r~L~g~l~~l~~~~a~~~~~~~-~i~~~~~~~~l~ 341 (445)
T PRK12422 308 KSLLHALTLLAKRVAYKKLSHQ-LLYVDDIKALLH 341 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhhCC-CCCHHHHHHHHH
Confidence 7777766655 366666543 477777777765
No 193
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.67 E-value=2.2e-07 Score=98.18 Aligned_cols=260 Identities=15% Similarity=0.180 Sum_probs=132.9
Q ss_pred HHHHHHHHHhhcCCchhhHHHHhhcc--ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHH
Q 006051 287 IMQFKQFWSEFKDTPLKGRNAILRGI--CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFL 364 (663)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~si--~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la 364 (663)
.+.+.+-.+.+..++| .+.|+.|+ -|+-+.. ..|...+..++. .+..+.|++++||||||||+++
T Consensus 160 l~~~~~~R~~FT~dEW--id~LlrSiG~~P~~~~~-r~k~~~L~rl~~----------fve~~~Nli~lGp~GTGKThla 226 (449)
T TIGR02688 160 LDYYKEGRKEFTLEEW--IDVLIRSIGYEPEGFEA-RQKLLLLARLLP----------LVEPNYNLIELGPKGTGKSYIY 226 (449)
T ss_pred HHHHHHHHhhcCHHHH--HHHHHHhcCCCcccCCh-HHHHHHHHhhHH----------HHhcCCcEEEECCCCCCHHHHH
Confidence 3334433334444555 37788887 5654442 333333333311 2344589999999999999999
Q ss_pred HHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChh----hHHhHHHHHHhceeee
Q 006051 365 KFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREH----DRATIHEAMEQQTISV 440 (663)
Q Consensus 365 r~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~----~~~~L~~~me~~~i~i 440 (663)
.+++..+ .+..|...+.+ .+...- ..-..|.+ +.--+++|||+..++.+ ....|...|++|.++
T Consensus 227 ~~l~~~~---a~~sG~f~T~a-----~Lf~~L-~~~~lg~v--~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fs- 294 (449)
T TIGR02688 227 NNLSPYV---ILISGGTITVA-----KLFYNI-STRQIGLV--GRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFT- 294 (449)
T ss_pred HHHhHHH---HHHcCCcCcHH-----HHHHHH-HHHHHhhh--ccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCcee-
Confidence 9876541 11122111111 111110 00123333 34459999999996543 346677889999874
Q ss_pred eccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCC-----ChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCC
Q 006051 441 AKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTL-----SGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLS 514 (663)
Q Consensus 441 ~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l-----~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~ 514 (663)
+......-++.+.+++-.|.. ....+...+. ..+ ..|+++||...+.=.+.|.- ...++
T Consensus 295 -RG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf--~~lP~~~~DsAflDRiH~yiPGWeipk~------~~e~~------ 359 (449)
T TIGR02688 295 -RGDETKSSDASFVFLGNVPLTSEHMVKNSDLF--SPLPEFMRDSAFLDRIHGYLPGWEIPKI------RKEMF------ 359 (449)
T ss_pred -ccceeeeeeeEEEEEcccCCcchhhcCccccc--ccCChhhhhhHHHHhhhccCCCCcCccC------CHHHc------
Confidence 333333333444444433321 1111111000 112 35777787654432222211 00011
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccC-C
Q 006051 515 EEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMF-R 593 (663)
Q Consensus 515 ~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~-~ 593 (663)
...-.+..|.|.+++...|+. +-.+.+.+++.. +...+.|.-.++.|+.-+..||-+ .
T Consensus 360 ------t~~yGl~~DylsE~l~~lR~~-------~~~~~~~~~~~l--------~~~~~~RD~~aV~kt~SgllKLL~P~ 418 (449)
T TIGR02688 360 ------SNGYGFVVDYFAEALRELRER-------EYADIVDRHFSL--------SPNLNTRDVIAVKKTFSGLMKILFPH 418 (449)
T ss_pred ------ccCCcchHHHHHHHHHHHHhh-------HHHHhhhhheec--------CCCcchhhHHHHHHHHHHHHHHhCCC
Confidence 011224555565555555421 122223333211 334789999999999999999854 4
Q ss_pred CccChhhHHHHHHH
Q 006051 594 NEVTRLDAITAILC 607 (663)
Q Consensus 594 ~~V~~~Dv~~Ai~l 607 (663)
..++.+|+.+.++.
T Consensus 419 ~~~~~ee~~~~l~~ 432 (449)
T TIGR02688 419 GTITKEEFTECLEP 432 (449)
T ss_pred CCCCHHHHHHHHHH
Confidence 56889998775544
No 194
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.66 E-value=2.4e-07 Score=108.10 Aligned_cols=137 Identities=20% Similarity=0.399 Sum_probs=98.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCccc--CCceEEEee--cCchhHhhhhhh--hhccCCeeeccccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS--AGLTVTAVK--DGGEWMLEAGAL--VLADGGLCCIDEFDSM 421 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~--~gl~~~~~~--~~~~~~~~~g~l--~~a~~gvl~iDEid~l 421 (663)
.++||.|.||+|||.|..++|+..+.-....+.+... ..|..+.+. .+|++...-..+ ...+||-+++||++..
T Consensus 1544 kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEiNLa 1623 (4600)
T COG5271 1544 KPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEINLA 1623 (4600)
T ss_pred CceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehhhhh
Confidence 5899999999999999999999998877776554321 111111111 224433332222 3458999999999999
Q ss_pred ChhhHHhHHHHHHh-ceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhh
Q 006051 422 REHDRATIHEAMEQ-QTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLV 490 (663)
Q Consensus 422 ~~~~~~~L~~~me~-~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~ 490 (663)
+......|...+++ +...|...........+++|+||-||..+- .....+|.++++||..++.
T Consensus 1624 SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qg------gGRKgLPkSF~nRFsvV~~ 1687 (4600)
T COG5271 1624 SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQG------GGRKGLPKSFLNRFSVVKM 1687 (4600)
T ss_pred HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcC------CCcccCCHHHhhhhheEEe
Confidence 99999999999986 445566667777888999999999996110 0113688999999987664
No 195
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=8.9e-08 Score=110.45 Aligned_cols=189 Identities=23% Similarity=0.208 Sum_probs=109.3
Q ss_pred ccccCchh----HHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCce
Q 006051 313 CPQVFGLF----TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLT 388 (663)
Q Consensus 313 ~p~i~G~~----~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~ 388 (663)
+++|.|.+ .+|+.+++.|.-+... ....+.++..+|+.||||||||.+|++++....+.--..... ...|..
T Consensus 264 fd~vggl~~~i~~LKEmVl~PLlyPE~f---~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisff-mrkgaD 339 (1080)
T KOG0732|consen 264 FDSVGGLENYINQLKEMVLLPLLYPEFF---DNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFF-MRKGAD 339 (1080)
T ss_pred ccccccHHHHHHHHHHHHHhHhhhhhHh---hhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchh-hhcCch
Confidence 77888887 4567777777654222 234466677899999999999999999998766532111000 001110
Q ss_pred EEEeecCchhHhhhhh----h----hhccCCeeecccccccChh---hHH--------hHHHHHHhceeeeeccCceeec
Q 006051 389 VTAVKDGGEWMLEAGA----L----VLADGGLCCIDEFDSMREH---DRA--------TIHEAMEQQTISVAKAGLVTTL 449 (663)
Q Consensus 389 ~~~~~~~~~~~~~~g~----l----~~a~~gvl~iDEid~l~~~---~~~--------~L~~~me~~~i~i~k~g~~~~~ 449 (663)
. -+.|+.++.. + -.....|+|+||||-+.+. -|+ .|+..|+ |.. -
T Consensus 340 ~-----lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmd---------Gld--s 403 (1080)
T KOG0732|consen 340 C-----LSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMD---------GLD--S 403 (1080)
T ss_pred h-----hccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhcc---------CCC--C
Confidence 0 0233333211 1 1235689999999976542 122 2333332 221 1
Q ss_pred CCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCC-------
Q 006051 450 STRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTE------- 520 (663)
Q Consensus 450 ~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~------- 520 (663)
...+.+|+|||++...| +||++ |||-.|.+.-++... ..+|+..|...+.+...
T Consensus 404 RgqVvvigATnRpda~d------------paLRRPgrfdref~f~lp~~~a-----r~~Il~Ihtrkw~~~i~~~l~~~l 466 (1080)
T KOG0732|consen 404 RGQVVVIGATNRPDAID------------PALRRPGRFDREFYFPLPDVDA-----RAKILDIHTRKWEPPISRELLLWL 466 (1080)
T ss_pred CCceEEEcccCCccccc------------hhhcCCcccceeEeeeCCchHH-----HHHHHHHhccCCCCCCCHHHHHHH
Confidence 35678999999985444 57866 899999874433333 34566666654443211
Q ss_pred -CCCCCCCHHHHHHHHHHH
Q 006051 521 -PLTDIWPLAMLRRYIYFV 538 (663)
Q Consensus 521 -~~~~~~~~~~l~~~i~~~ 538 (663)
.....+-.++|+.++..|
T Consensus 467 a~~t~gy~gaDlkaLCTeA 485 (1080)
T KOG0732|consen 467 AEETSGYGGADLKALCTEA 485 (1080)
T ss_pred HHhccccchHHHHHHHHHH
Confidence 112234456677777555
No 196
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=98.65 E-value=1.2e-07 Score=103.49 Aligned_cols=190 Identities=18% Similarity=0.167 Sum_probs=94.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC-----CceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR 422 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~-----~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~ 422 (663)
.+++|+|+||+|||+|++++++.+. ..++..........+. ..........+ .. ...+..+++|||++.+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~-~~~~~~~~~~~-~~--~~~~~dlLiiDDi~~l~ 212 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFV-NALRNNKMEEF-KE--KYRSVDLLLIDDIQFLA 212 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHH-HHHHcCCHHHH-HH--HHHhCCEEEEehhhhhc
Confidence 4689999999999999999997542 2222111000000000 00000000000 00 11235699999999986
Q ss_pred hh--hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeC-CCCCCCCCCccccccCCChhhhhhhh--hhhhhcCCCCh
Q 006051 423 EH--DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN-PKGHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTKNP 497 (663)
Q Consensus 423 ~~--~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN-~~g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~~~ 497 (663)
.. .+..++..++...- . ...++.++| ++..+ ..+.+.|.+||. +.+.+ ..++.
T Consensus 213 ~~~~~~~~l~~~~n~~~~----~--------~~~iiits~~~p~~l---------~~l~~~l~SRl~~g~~v~i-~~pd~ 270 (405)
T TIGR00362 213 GKERTQEEFFHTFNALHE----N--------GKQIVLTSDRPPKEL---------PGLEERLRSRFEWGLVVDI-EPPDL 270 (405)
T ss_pred CCHHHHHHHHHHHHHHHH----C--------CCCEEEecCCCHHHH---------hhhhhhhhhhccCCeEEEe-CCCCH
Confidence 53 34556666553210 0 112344444 33211 124568999996 34555 44444
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHH
Q 006051 498 EWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRML 577 (663)
Q Consensus 498 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~L 577 (663)
+....+....... ....+++++.++|... +..++|.|
T Consensus 271 ~~r~~il~~~~~~-------------------------------~~~~l~~e~l~~ia~~------------~~~~~r~l 307 (405)
T TIGR00362 271 ETRLAILQKKAEE-------------------------------EGLELPDEVLEFIAKN------------IRSNVREL 307 (405)
T ss_pred HHHHHHHHHHHHH-------------------------------cCCCCCHHHHHHHHHh------------cCCCHHHH
Confidence 4333332222211 1334566666665543 23456777
Q ss_pred HHHHHHHHHHHhccCCCccChhhHHHHHHH
Q 006051 578 ESLIRLAQAHARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 578 e~lirla~a~A~l~~~~~V~~~Dv~~Ai~l 607 (663)
+.++..-.+.|.+.. ..+|.+.+..++.-
T Consensus 308 ~~~l~~l~~~a~~~~-~~it~~~~~~~L~~ 336 (405)
T TIGR00362 308 EGALNRLLAYASLTG-KPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHHHH
Confidence 766666666665543 34666666665543
No 197
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=8.5e-07 Score=100.60 Aligned_cols=182 Identities=19% Similarity=0.216 Sum_probs=114.3
Q ss_pred ccccccccCCCchHHHHHHHHHHhc----------CCceEEeCCCcccCCceEEEeecCchhHhhh----hhhhhccCCe
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLGSTSAGLTVTAVKDGGEWMLEA----GALVLADGGL 412 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~----------~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~----g~l~~a~~gv 412 (663)
.-|-+|+|+||+|||.++..+|... ...++....++..+|.. .+ |++.-.- ..+..+.+-|
T Consensus 191 KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGak---yR--GeFEeRlk~vl~ev~~~~~vI 265 (786)
T COG0542 191 KNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAK---YR--GEFEERLKAVLKEVEKSKNVI 265 (786)
T ss_pred CCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhcccc---cc--CcHHHHHHHHHHHHhcCCCeE
Confidence 3678899999999999999998732 33455555554444322 12 3332221 2223455789
Q ss_pred eeccccccc-----C----hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh
Q 006051 413 CCIDEFDSM-----R----EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS 483 (663)
Q Consensus 413 l~iDEid~l-----~----~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~ 483 (663)
+||||++.+ . -+.-+.|..++..|.+ .+||||... .|+.-+.-.+||-+
T Consensus 266 LFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL---------------~~IGATT~~-------EYRk~iEKD~AL~R 323 (786)
T COG0542 266 LFIDEIHTIVGAGATEGGAMDAANLLKPALARGEL---------------RCIGATTLD-------EYRKYIEKDAALER 323 (786)
T ss_pred EEEechhhhcCCCcccccccchhhhhHHHHhcCCe---------------EEEEeccHH-------HHHHHhhhchHHHh
Confidence 999999986 1 3355667778887776 788999864 12222444579999
Q ss_pred hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCC-ccCHHHHHHHHHHHHHHH
Q 006051 484 RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKP-ILTKEAEKVISSYYQLQR 562 (663)
Q Consensus 484 RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p-~ls~ea~~~l~~~y~~~r 562 (663)
||.-+.+ +.|+.+..-.|.+.+...+.. ...-.++.+.|.....+..+++.- .|++.|.++|.......|
T Consensus 324 RFQ~V~V--~EPs~e~ti~ILrGlk~~yE~-------hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAIDLiDeA~a~~~ 394 (786)
T COG0542 324 RFQKVLV--DEPSVEDTIAILRGLKERYEA-------HHGVRITDEALVAAVTLSDRYIPDRFLPDKAIDLLDEAGARVR 394 (786)
T ss_pred cCceeeC--CCCCHHHHHHHHHHHHHHHHH-------ccCceecHHHHHHHHHHHHhhcccCCCCchHHHHHHHHHHHHH
Confidence 9987664 445444333333333322221 122346778888888777777654 488889999998877666
Q ss_pred hc
Q 006051 563 RS 564 (663)
Q Consensus 563 ~~ 564 (663)
..
T Consensus 395 l~ 396 (786)
T COG0542 395 LE 396 (786)
T ss_pred hc
Confidence 53
No 198
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=98.63 E-value=1.4e-07 Score=103.52 Aligned_cols=191 Identities=14% Similarity=0.160 Sum_probs=103.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcC-----CceEEeCCCcccCCceEEEeecCchhHhhhhhhh-----hccCCeeeccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-----LADGGLCCIDE 417 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~-----~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~-----~a~~gvl~iDE 417 (663)
.+++|+|++|+|||+|++++++... ..++..... .+.. ... .......+.+. ..+..+++|||
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~----~f~~-~~~--~~l~~~~~~~~~~~~~~~~~dvLiIDD 214 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGD----EFAR-KAV--DILQKTHKEIEQFKNEICQNDVLIIDD 214 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHH----HHHH-HHH--HHHHHhhhHHHHHHHHhccCCEEEEec
Confidence 4699999999999999999988432 222211000 0000 000 00000001111 13456999999
Q ss_pred ccccC--hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhh--hhhhhc
Q 006051 418 FDSMR--EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFD--IVLVLL 492 (663)
Q Consensus 418 id~l~--~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~ 492 (663)
++.+. ...+..++..++...- .+-.+|.|+|.. .. ...+.+.|.+||. +++.+.
T Consensus 215 iq~l~~k~~~~e~lf~l~N~~~~------------~~k~iIltsd~~P~~---------l~~l~~rL~SR~~~Gl~~~L~ 273 (450)
T PRK14087 215 VQFLSYKEKTNEIFFTIFNNFIE------------NDKQLFFSSDKSPEL---------LNGFDNRLITRFNMGLSIAIQ 273 (450)
T ss_pred cccccCCHHHHHHHHHHHHHHHH------------cCCcEEEECCCCHHH---------HhhccHHHHHHHhCCceeccC
Confidence 99986 4456777777765321 111456666643 11 1245678999996 444442
Q ss_pred CCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccc
Q 006051 493 DTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAART 572 (663)
Q Consensus 493 d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~ 572 (663)
. ++.+....+..+.+.. ..+...+++++.++|... ...
T Consensus 274 ~-pd~e~r~~iL~~~~~~-----------------------------~gl~~~l~~evl~~Ia~~------------~~g 311 (450)
T PRK14087 274 K-LDNKTATAIIKKEIKN-----------------------------QNIKQEVTEEAINFISNY------------YSD 311 (450)
T ss_pred C-cCHHHHHHHHHHHHHh-----------------------------cCCCCCCCHHHHHHHHHc------------cCC
Confidence 2 2222222222111110 012235788888777765 345
Q ss_pred cHhHHHHHHHHHHHHHhccC-CCccChhhHHHHHHHH
Q 006051 573 TVRMLESLIRLAQAHARLMF-RNEVTRLDAITAILCI 608 (663)
Q Consensus 573 t~R~Le~lirla~a~A~l~~-~~~V~~~Dv~~Ai~l~ 608 (663)
++|.|+.++.-..+.|.+.. ...++.+.|..++.-+
T Consensus 312 d~R~L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 312 DVRKIKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred CHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 78888888866666666653 2568888888777543
No 199
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=98.62 E-value=2.7e-06 Score=90.61 Aligned_cols=258 Identities=17% Similarity=0.208 Sum_probs=154.2
Q ss_pred HHHHHHHHHhhcCCchhhHHHHhhcc--ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHH
Q 006051 287 IMQFKQFWSEFKDTPLKGRNAILRGI--CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFL 364 (663)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~si--~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la 364 (663)
.+.+.+-.+.+..++| .+.|+.|+ -|+-+.. ..|..++.-|+=- ...+.|++=.||.|||||.+-
T Consensus 159 l~~~~~~R~~FT~eEW--iD~LlrS~G~eP~~~~~-r~Kl~~L~RLiPl----------VE~N~NliELgPrGTGKS~vy 225 (457)
T PF13337_consen 159 LDEYREARKEFTTEEW--IDLLLRSIGYEPSGFSE-RQKLLLLARLIPL----------VERNYNLIELGPRGTGKSYVY 225 (457)
T ss_pred HHHHHHHHHhcCHHHH--HHHHHHhcCCCccccCH-HHHHHHHHhHHHh----------cccccceEEEcCCCCCceeeh
Confidence 4445444455555666 47889887 5555544 6666666555432 233589999999999999985
Q ss_pred HHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccC---hhhHHhHHHHHHhceeeee
Q 006051 365 KFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR---EHDRATIHEAMEQQTISVA 441 (663)
Q Consensus 365 r~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~---~~~~~~L~~~me~~~i~i~ 441 (663)
+ +++|.+.+.+|...|.+.|......+ +.|.+..- -++++||+..++ ++....|...|++|..+..
T Consensus 226 ~---eiSp~~~liSGG~~T~A~LFyn~~~~------~~GlV~~~--D~VafDEv~~i~f~d~d~i~imK~YMesG~fsRG 294 (457)
T PF13337_consen 226 K---EISPYGILISGGQVTVAKLFYNMSTG------QIGLVGRW--DVVAFDEVAGIKFKDKDEIQIMKDYMESGSFSRG 294 (457)
T ss_pred h---hcCcccEEEECCCcchHHheeeccCC------cceeeeec--cEEEEEeccCcccCChHHHHHHHHHHhccceeec
Confidence 4 56777887777655555554322221 34444333 389999999985 4445678888999998543
Q ss_pred ccCceeecCCcEEEEEeeCCCCCCC---CCCccccccCC-----ChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCC
Q 006051 442 KAGLVTTLSTRTIIFGATNPKGHYD---PNLSLSVNTTL-----SGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGL 513 (663)
Q Consensus 442 k~g~~~~~~~~~~iiaatN~~g~~d---~~~~~~~~~~l-----~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~ 513 (663)
+ .+..++++++...|.....+ ....+. ..+ ..|+++||...+.=.+.|.-.. .+.
T Consensus 295 ~----~~i~a~as~vf~GNi~~~v~~~~~~~~lf--~~lP~~~~DsAflDRiH~~iPGWeiPk~~~-----e~~------ 357 (457)
T PF13337_consen 295 K----EEINADASMVFVGNINQSVENMLKTSHLF--EPLPEEMRDSAFLDRIHGYIPGWEIPKIRP-----EMF------ 357 (457)
T ss_pred c----cccccceeEEEEcCcCCcchhccccchhh--hhcCHHHHHHHHHhHhheeccCccccccCH-----HHc------
Confidence 3 24567777777777642111 111110 112 3678888866554333332110 010
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccC-
Q 006051 514 SEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMF- 592 (663)
Q Consensus 514 ~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~- 592 (663)
.....+..+.+.+++...|+. +-...+.+++.. +...+.|.-+++.|++-+..||-+
T Consensus 358 -------t~~~gl~~Dy~aE~l~~LR~~-------~~~~~~~~~~~l--------g~~~~~RD~~AV~kt~SgllKLL~P 415 (457)
T PF13337_consen 358 -------TNGYGLIVDYFAEILHELRKQ-------SYSDAVDKYFKL--------GSNLSQRDTKAVKKTVSGLLKLLFP 415 (457)
T ss_pred -------cCCceeeHHHHHHHHHHHHHH-------HHHHHHHhhEee--------CCCcchhhHHHHHHHHHHHHHhhCC
Confidence 112335667777777666531 112223333211 234678999999999999999976
Q ss_pred CCccChhhHHHHHHH
Q 006051 593 RNEVTRLDAITAILC 607 (663)
Q Consensus 593 ~~~V~~~Dv~~Ai~l 607 (663)
...++.+|+...++.
T Consensus 416 ~~~~~~ee~~~~l~~ 430 (457)
T PF13337_consen 416 HGEFTKEELEECLRP 430 (457)
T ss_pred CCCCCHHHHHHHHHH
Confidence 457888887766544
No 200
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.59 E-value=8.5e-07 Score=91.14 Aligned_cols=197 Identities=19% Similarity=0.199 Sum_probs=110.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC-ceEEeCCCc---cc----------CCceEEEeecCch-hH---hhh---hhhh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR-SVITTGLGS---TS----------AGLTVTAVKDGGE-WM---LEA---GALV 406 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~-~~~~~~~~~---~~----------~gl~~~~~~~~~~-~~---~~~---g~l~ 406 (663)
..++|+||+|+|||++++.+++.... .+....... +. -|+. ..+... .. +.. ....
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~---~~~~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLE---TEGRDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCC---CCCCCHHHHHHHHHHHHHHHHh
Confidence 45889999999999999999987652 222211110 00 0010 000000 00 000 0011
Q ss_pred hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC--CCCCCCCccccccCCChhhhhh
Q 006051 407 LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK--GHYDPNLSLSVNTTLSGPLLSR 484 (663)
Q Consensus 407 ~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~--g~~d~~~~~~~~~~l~~aLl~R 484 (663)
.....+++|||++.++......+....+-.. . -...+.++.+..|. ..+.. .-..++.+|
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~-----~-----~~~~~~vvl~g~~~~~~~l~~--------~~~~~l~~r 182 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQT-----D-----NAKLLQIFLVGQPEFRETLQS--------PQLQQLRQR 182 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCccc-----C-----CCCeEEEEEcCCHHHHHHHcC--------chhHHHHhh
Confidence 2234689999999998877666654333211 0 01223555555543 11100 001234444
Q ss_pred hhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHcc----CCCccCHHHHHHHHHHHHH
Q 006051 485 FDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGY----FKPILTKEAEKVISSYYQL 560 (663)
Q Consensus 485 Fdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~----~~p~ls~ea~~~l~~~y~~ 560 (663)
+...+.+ ++++.+.++.|+...-.. -.+.+++++.+.|.++
T Consensus 183 ~~~~~~l--------------------------------~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~--- 227 (269)
T TIGR03015 183 IIASCHL--------------------------------GPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRF--- 227 (269)
T ss_pred eeeeeeC--------------------------------CCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHH---
Confidence 4333333 345556666666432211 1246888888888876
Q ss_pred HHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHH
Q 006051 561 QRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 561 ~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~ 609 (663)
..+.+|.+..+...+...|..+..+.|+.+++..|+.-+.
T Consensus 228 ---------s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 228 ---------SRGIPRLINILCDRLLLSAFLEEKREIGGEEVREVIAEID 267 (269)
T ss_pred ---------cCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhh
Confidence 3455788999999999998888899999999999987543
No 201
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.59 E-value=7.6e-08 Score=98.51 Aligned_cols=147 Identities=18% Similarity=0.229 Sum_probs=76.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE---eCCCc-ccCC-c----eEEEeecCchhHhhhhhhhhccCCeeecccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT---TGLGS-TSAG-L----TVTAVKDGGEWMLEAGALVLADGGLCCIDEF 418 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~---~~~~~-~~~g-l----~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEi 418 (663)
.|+||+||+|||||.+++..-+..+..-+. ...++ +.+. + .....+..|. .+ |. ......|+|||++
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~-~~--gP-~~~k~lv~fiDDl 109 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGR-VY--GP-PGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTE-EE--EE-ESSSEEEEEEETT
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCC-CC--CC-CCCcEEEEEeccc
Confidence 799999999999999998876644432211 11111 0000 0 0000010010 00 11 0123459999999
Q ss_pred cccChhh------HHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 419 DSMREHD------RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 419 d~l~~~~------~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
+.-.++. .+.|+++|+.|.+.-.+...... =.++.++||+||. |+ ..+++.|++.|-++. +
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~-i~~i~~vaa~~p~~Gr----------~~is~R~~r~f~i~~-~ 177 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKS-IEDIQFVAAMNPTGGR----------NPISPRFLRHFNILN-I 177 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEE-ECSEEEEEEESSTTT------------SHHHHHHTTEEEEE--
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEE-EeeeEEEEecCCCCCC----------CCCChHHhhheEEEE-e
Confidence 9876442 46788899988765433222222 3468899999996 43 246678888886433 4
Q ss_pred cCCCChhHHHHHHHHHhhhc
Q 006051 492 LDTKNPEWDAVVSSHILAEG 511 (663)
Q Consensus 492 ~d~~~~~~d~~i~~~il~~~ 511 (663)
..+.++.. ..|-..++..+
T Consensus 178 ~~p~~~sl-~~If~~il~~~ 196 (272)
T PF12775_consen 178 PYPSDESL-NTIFSSILQSH 196 (272)
T ss_dssp ---TCCHH-HHHHHHHHHHH
T ss_pred cCCChHHH-HHHHHHHHhhh
Confidence 33334343 33444455444
No 202
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=7.7e-08 Score=95.92 Aligned_cols=118 Identities=25% Similarity=0.277 Sum_probs=75.6
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhh--------hccCCeeec
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV--------LADGGLCCI 415 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~--------~a~~gvl~i 415 (663)
+..+..+||+||||||||.++++++...+..++..-.++...+ ..| +++.+. .-..+++|+
T Consensus 163 Ik~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~k-------yiG----EsaRlIRemf~yA~~~~pciifm 231 (388)
T KOG0651|consen 163 IKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDK-------YIG----ESARLIRDMFRYAREVIPCIIFM 231 (388)
T ss_pred CCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhh-------hcc----cHHHHHHHHHHHHhhhCceEEee
Confidence 5567889999999999999999999988776654322211110 001 122221 113589999
Q ss_pred ccccccC-----------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh-
Q 006051 416 DEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS- 483 (663)
Q Consensus 416 DEid~l~-----------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~- 483 (663)
||||... ...+..|.+.+++-. | .....++-+|.|+|.+..+| |||++
T Consensus 232 deiDAigGRr~se~Ts~dreiqrTLMeLlnqmd------g--fd~l~rVk~ImatNrpdtLd------------paLlRp 291 (388)
T KOG0651|consen 232 DEIDAIGGRRFSEGTSSDREIQRTLMELLNQMD------G--FDTLHRVKTIMATNRPDTLD------------PALLRP 291 (388)
T ss_pred hhhhhhccEEeccccchhHHHHHHHHHHHHhhc------c--chhcccccEEEecCCccccc------------hhhcCC
Confidence 9999862 334556666665311 1 11245778999999885555 47877
Q ss_pred -hhhhhhhhc
Q 006051 484 -RFDIVLVLL 492 (663)
Q Consensus 484 -RFdli~~l~ 492 (663)
|.|-.+..+
T Consensus 292 GRldrk~~iP 301 (388)
T KOG0651|consen 292 GRLDRKVEIP 301 (388)
T ss_pred ccccceeccC
Confidence 777777663
No 203
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.55 E-value=8.2e-08 Score=91.92 Aligned_cols=136 Identities=24% Similarity=0.304 Sum_probs=85.7
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc-CCc----eEEeCCCcccCC
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS-NRS----VITTGLGSTSAG 386 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~-~~~----~~~~~~~~~~~g 386 (663)
...+|.|++....-+-+..-.| .-.|+++.||||||||+-+.++|+.+ +.+ ++.. ..+...|
T Consensus 25 ~l~dIVGNe~tv~rl~via~~g------------nmP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL-NASdeRG 91 (333)
T KOG0991|consen 25 VLQDIVGNEDTVERLSVIAKEG------------NMPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL-NASDERG 91 (333)
T ss_pred HHHHhhCCHHHHHHHHHHHHcC------------CCCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc-cCccccc
Confidence 3458999998877766655444 12799999999999999999998753 321 2111 1111122
Q ss_pred ceEEEeecC-chhHhhhhhhhh--ccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCC
Q 006051 387 LTVTAVKDG-GEWMLEAGALVL--ADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKG 463 (663)
Q Consensus 387 l~~~~~~~~-~~~~~~~g~l~~--a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g 463 (663)
+.. ++.. ..+. ...+.+ ....|+++||.|.|....|.+|.+.||-- ...+++..|+|..
T Consensus 92 IDv--VRn~IK~FA--Q~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiy-------------S~ttRFalaCN~s- 153 (333)
T KOG0991|consen 92 IDV--VRNKIKMFA--QKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIY-------------SNTTRFALACNQS- 153 (333)
T ss_pred cHH--HHHHHHHHH--HhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHH-------------cccchhhhhhcch-
Confidence 211 1100 1110 111112 34469999999999999999999999842 2345777888975
Q ss_pred CCCCCCccccccCCChhhhhhhhhhh
Q 006051 464 HYDPNLSLSVNTTLSGPLLSRFDIVL 489 (663)
Q Consensus 464 ~~d~~~~~~~~~~l~~aLl~RFdli~ 489 (663)
.++-.|+-||+.+.=
T Consensus 154 -----------~KIiEPIQSRCAiLR 168 (333)
T KOG0991|consen 154 -----------EKIIEPIQSRCAILR 168 (333)
T ss_pred -----------hhhhhhHHhhhHhhh
Confidence 245567888886543
No 204
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.55 E-value=2.6e-07 Score=102.80 Aligned_cols=188 Identities=15% Similarity=0.168 Sum_probs=95.0
Q ss_pred ccccccCCCchHHHHHHHHHHhcCC-----ceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccCh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNR-----SVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE 423 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~-----~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~ 423 (663)
+++|+|++|+|||+|++++++.+.. .++..........+.. .++++....+. . ...+-.+++||||+.+..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~-al~~~~~~~f~-~--~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFIN-SIRDGKGDSFR-R--RYREMDILLVDDIQFLED 391 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHH-HHHhccHHHHH-H--HhhcCCEEEEehhccccC
Confidence 4999999999999999999986421 2211110000000000 00000000000 0 112356999999999854
Q ss_pred h--hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhh--hhhhhcCCCChh
Q 006051 424 H--DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTKNPE 498 (663)
Q Consensus 424 ~--~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~~~~ 498 (663)
. .+..|+..++... ..+..+|.|+|.. ..+ ..+.+.|.+||. +++.+ ..++.+
T Consensus 392 ke~tqeeLF~l~N~l~------------e~gk~IIITSd~~P~eL---------~~l~~rL~SRf~~GLvv~I-~~PD~E 449 (617)
T PRK14086 392 KESTQEEFFHTFNTLH------------NANKQIVLSSDRPPKQL---------VTLEDRLRNRFEWGLITDV-QPPELE 449 (617)
T ss_pred CHHHHHHHHHHHHHHH------------hcCCCEEEecCCChHhh---------hhccHHHHhhhhcCceEEc-CCCCHH
Confidence 3 3566777766532 1112455567653 221 135678999995 44455 233333
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHH
Q 006051 499 WDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLE 578 (663)
Q Consensus 499 ~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le 578 (663)
....|...... .....+++++.++|...+ .-++|.|+
T Consensus 450 tR~aIL~kka~-------------------------------~r~l~l~~eVi~yLa~r~------------~rnvR~Le 486 (617)
T PRK14086 450 TRIAILRKKAV-------------------------------QEQLNAPPEVLEFIASRI------------SRNIRELE 486 (617)
T ss_pred HHHHHHHHHHH-------------------------------hcCCCCCHHHHHHHHHhc------------cCCHHHHH
Confidence 33322221111 113355666666665432 23466676
Q ss_pred HHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 579 SLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 579 ~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
.++.--.+.|.+.. ..++.+.+.++++
T Consensus 487 gaL~rL~a~a~~~~-~~itl~la~~vL~ 513 (617)
T PRK14086 487 GALIRVTAFASLNR-QPVDLGLTEIVLR 513 (617)
T ss_pred HHHHHHHHHHHhhC-CCCCHHHHHHHHH
Confidence 66665555555543 3456665555554
No 205
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=1.7e-07 Score=93.99 Aligned_cols=132 Identities=22% Similarity=0.322 Sum_probs=81.9
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC--chhHhhhhhhhh----------ccCC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG--GEWMLEAGALVL----------ADGG 411 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~--~~~~~~~g~l~~----------a~~g 411 (663)
+..+.=|||.||||||||+|.+++|+-+.-. +.+.. ..|.....-..+ ..|+-+.|.++. .+.|
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR--~~~~y--~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~ 249 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIR--TNDRY--YKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRG 249 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheee--ecCcc--ccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCC
Confidence 4445679999999999999999999854321 11111 112221111112 577777777653 2333
Q ss_pred ---eeecccccccChh---------------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCcccc
Q 006051 412 ---LCCIDEFDSMREH---------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSV 473 (663)
Q Consensus 412 ---vl~iDEid~l~~~---------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~ 473 (663)
.++|||.+.+... ..++++.-|++-+ -..++.+++|+|-..
T Consensus 250 ~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK-----------~~~NvliL~TSNl~~---------- 308 (423)
T KOG0744|consen 250 NLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLK-----------RYPNVLILATSNLTD---------- 308 (423)
T ss_pred cEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhc-----------cCCCEEEEeccchHH----------
Confidence 3559999987422 2345555555422 135779999999763
Q ss_pred ccCCChhhhhhhhhhhhhcCCCChhHHHH
Q 006051 474 NTTLSGPLLSRFDIVLVLLDTKNPEWDAV 502 (663)
Q Consensus 474 ~~~l~~aLl~RFdli~~l~d~~~~~~d~~ 502 (663)
.+..|+.+|=|..+.+..+.....-.+
T Consensus 309 --siD~AfVDRADi~~yVG~Pt~~ai~~I 335 (423)
T KOG0744|consen 309 --SIDVAFVDRADIVFYVGPPTAEAIYEI 335 (423)
T ss_pred --HHHHHhhhHhhheeecCCccHHHHHHH
Confidence 344599999999999966555444333
No 206
>PRK05642 DNA replication initiation factor; Validated
Probab=98.48 E-value=2.1e-06 Score=86.27 Aligned_cols=177 Identities=18% Similarity=0.178 Sum_probs=95.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcC---Cc-eEEeCCCcccCCceEEEeecCchhHhh-hhhhh-hccCCeeeccccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RS-VITTGLGSTSAGLTVTAVKDGGEWMLE-AGALV-LADGGLCCIDEFDSM 421 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~---~~-~~~~~~~~~~~gl~~~~~~~~~~~~~~-~g~l~-~a~~gvl~iDEid~l 421 (663)
.+++|+|++|+|||+|++++++... .. +|... .+.... +..+. ..+.-+++||+++.+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~----------------~~~~~~~~~~~~~~~~~d~LiiDDi~~~ 109 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPL----------------AELLDRGPELLDNLEQYELVCLDDLDVI 109 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeH----------------HHHHhhhHHHHHhhhhCCEEEEechhhh
Confidence 5789999999999999999986432 11 11110 011000 11111 123358999999987
Q ss_pred Ch--hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh--hhhhhcCCCCh
Q 006051 422 RE--HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTKNP 497 (663)
Q Consensus 422 ~~--~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~~~ 497 (663)
.. ..+..|+..++.-.- +....+++++.++..+. ...+.|.|||. +++.+..++++
T Consensus 110 ~~~~~~~~~Lf~l~n~~~~-----------~g~~ilits~~~p~~l~---------~~~~~L~SRl~~gl~~~l~~~~~e 169 (234)
T PRK05642 110 AGKADWEEALFHLFNRLRD-----------SGRRLLLAASKSPRELP---------IKLPDLKSRLTLALVFQMRGLSDE 169 (234)
T ss_pred cCChHHHHHHHHHHHHHHh-----------cCCEEEEeCCCCHHHcC---------ccCccHHHHHhcCeeeecCCCCHH
Confidence 53 335667777754210 11224445444442221 23467999995 55544333332
Q ss_pred hHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHH
Q 006051 498 EWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRML 577 (663)
Q Consensus 498 ~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~L 577 (663)
+....+.. .+... .-.+++++.++|... .+.++|.+
T Consensus 170 ~~~~il~~-------------------------------ka~~~-~~~l~~ev~~~L~~~------------~~~d~r~l 205 (234)
T PRK05642 170 DKLRALQL-------------------------------RASRR-GLHLTDEVGHFILTR------------GTRSMSAL 205 (234)
T ss_pred HHHHHHHH-------------------------------HHHHc-CCCCCHHHHHHHHHh------------cCCCHHHH
Confidence 22222211 12111 235788888888765 34568888
Q ss_pred HHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 578 ESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 578 e~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
++++..-.. +.+.-...||..=+.+++
T Consensus 206 ~~~l~~l~~-~~l~~~~~it~~~~~~~L 232 (234)
T PRK05642 206 FDLLERLDQ-ASLQAQRKLTIPFLKETL 232 (234)
T ss_pred HHHHHHHHH-HHHHcCCcCCHHHHHHHh
Confidence 888776543 444433457766555543
No 207
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=2e-06 Score=91.51 Aligned_cols=208 Identities=17% Similarity=0.132 Sum_probs=121.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCc-----eEEeCCCcccCCc--eE---E---EeecCchhHhh-----hhhhh-hc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS-----VITTGLGSTSAGL--TV---T---AVKDGGEWMLE-----AGALV-LA 408 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~-----~~~~~~~~~~~gl--~~---~---~~~~~~~~~~~-----~g~l~-~a 408 (663)
.|++++|+||||||..++++.+....+ ++..++....... .. . .....|....+ -..+. ..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~ 122 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSKKG 122 (366)
T ss_pred ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcC
Confidence 579999999999999999999854322 2332222111000 00 0 00000100000 00111 11
Q ss_pred cCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhh
Q 006051 409 DGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIV 488 (663)
Q Consensus 409 ~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli 488 (663)
..-|+.+||+|.|-......|........- ...++.+++.+|-... ...+.+.+.++|...
T Consensus 123 ~~~IvvLDEid~L~~~~~~~LY~L~r~~~~----------~~~~v~vi~i~n~~~~---------~~~ld~rv~s~l~~~ 183 (366)
T COG1474 123 KTVIVILDEVDALVDKDGEVLYSLLRAPGE----------NKVKVSIIAVSNDDKF---------LDYLDPRVKSSLGPS 183 (366)
T ss_pred CeEEEEEcchhhhccccchHHHHHHhhccc----------cceeEEEEEEeccHHH---------HHHhhhhhhhccCcc
Confidence 234889999999987766666665543321 1567789999996410 011222333333211
Q ss_pred hhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHc-cC-CCccCHHHHHHHHHHHHHHHhccc
Q 006051 489 LVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKG-YF-KPILTKEAEKVISSYYQLQRRSAT 566 (663)
Q Consensus 489 ~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~-~~-~p~ls~ea~~~l~~~y~~~r~~~~ 566 (663)
- ...++++.++|..++..-.. .+ ...+++++.+++.+.....
T Consensus 184 ~-------------------------------I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~----- 227 (366)
T COG1474 184 E-------------------------------IVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAE----- 227 (366)
T ss_pred e-------------------------------eeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHc-----
Confidence 1 23345666666666633222 22 3458888888888764332
Q ss_pred CCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhh
Q 006051 567 QNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTT 614 (663)
Q Consensus 567 ~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~ 614 (663)
.+..|....++|.|.-.|.-+.+..|+++|+..|..-++.....
T Consensus 228 ----~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~ 271 (366)
T COG1474 228 ----SGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDVLE 271 (366)
T ss_pred ----CccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHHHH
Confidence 23699999999999999999999999999999996665554433
No 208
>PRK04132 replication factor C small subunit; Provisional
Probab=98.46 E-value=4.8e-06 Score=96.49 Aligned_cols=115 Identities=14% Similarity=0.192 Sum_probs=72.5
Q ss_pred cccccccc--CCCchHHHHHHHHHHhc-----CCceEEeCCCcccCCceEEEeecC-chhHhhhhhhhhccCCeeecccc
Q 006051 347 ESHLLLVG--DPGTGKSQFLKFAAKLS-----NRSVITTGLGSTSAGLTVTAVKDG-GEWMLEAGALVLADGGLCCIDEF 418 (663)
Q Consensus 347 ~~~iLL~G--~pGtGKs~lar~ia~~~-----~~~~~~~~~~~~~~gl~~~~~~~~-~~~~~~~g~l~~a~~gvl~iDEi 418 (663)
..|-+..| |.+.|||++|+++++.. ...++..+.+. ..|.. .+++. .+.. ....+..+...|++|||+
T Consensus 564 ~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd-~rgid--~IR~iIk~~a-~~~~~~~~~~KVvIIDEa 639 (846)
T PRK04132 564 GYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASD-ERGIN--VIREKVKEFA-RTKPIGGASFKIIFLDEA 639 (846)
T ss_pred chhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCC-cccHH--HHHHHHHHHH-hcCCcCCCCCEEEEEECc
Confidence 36778889 99999999999999875 22344432211 11111 01110 0000 000010012359999999
Q ss_pred cccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 419 DSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 419 d~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
|.|+.+.|++|+..||+- +..+.+|.+||+. ..+.++++||+. ++.+
T Consensus 640 D~Lt~~AQnALLk~lEep-------------~~~~~FILi~N~~------------~kIi~tIrSRC~-~i~F 686 (846)
T PRK04132 640 DALTQDAQQALRRTMEMF-------------SSNVRFILSCNYS------------SKIIEPIQSRCA-IFRF 686 (846)
T ss_pred ccCCHHHHHHHHHHhhCC-------------CCCeEEEEEeCCh------------hhCchHHhhhce-EEeC
Confidence 999999999999999962 3456888889976 356689999984 3444
No 209
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.45 E-value=3.2e-07 Score=83.37 Aligned_cols=109 Identities=20% Similarity=0.216 Sum_probs=58.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCc---eEEeCCCcccCCceE--------EEeecCchhHhhhhhhhhcc---CCee
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS---VITTGLGSTSAGLTV--------TAVKDGGEWMLEAGALVLAD---GGLC 413 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~---~~~~~~~~~~~gl~~--------~~~~~~~~~~~~~g~l~~a~---~gvl 413 (663)
.+++|+||||||||++++.++..+... ++............. ...............+..+. .+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi 82 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVL 82 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 689999999999999999999987764 444332221111000 00000111111112333333 3999
Q ss_pred ecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC
Q 006051 414 CIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 414 ~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
+|||++.+.............. ..............+|+++|.
T Consensus 83 iiDei~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 83 ILDEITSLLDAEQEALLLLLEE-----LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EEECCcccCCHHHHHHHHhhhh-----hHHHHHHHhcCCCEEEEEeCC
Confidence 9999999987665554332110 000000111345689999995
No 210
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.44 E-value=2.1e-06 Score=85.53 Aligned_cols=188 Identities=24% Similarity=0.306 Sum_probs=102.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
..-.++||+|||||...+.+++.+++.++...+.... +...+ + .+-.|.. ..|..+|+|||++++.+...
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~---~~~~l---~--ril~G~~--~~GaW~cfdefnrl~~~vLS 102 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQM---DYQSL---S--RILKGLA--QSGAWLCFDEFNRLSEEVLS 102 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS----HHHH---H--HHHHHHH--HHT-EEEEETCCCSSHHHHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccc---cHHHH---H--HHHHHHh--hcCchhhhhhhhhhhHHHHH
Confidence 3456899999999999999999999999887654321 10000 0 0112222 35779999999999987766
Q ss_pred hH-------HHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHH
Q 006051 428 TI-------HEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWD 500 (663)
Q Consensus 428 ~L-------~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d 500 (663)
.+ ..++..+.-.+.-.|....++..+.++.|.||.- .....+|+.|..-|--+-.. .++..
T Consensus 103 ~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y--------~gr~~LP~nLk~lFRpvam~----~PD~~ 170 (231)
T PF12774_consen 103 VISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGY--------AGRSELPENLKALFRPVAMM----VPDLS 170 (231)
T ss_dssp HHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-C--------CCC--S-HHHCTTEEEEE------S--HH
T ss_pred HHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeecccc--------CCcccCCHhHHHHhheeEEe----CCCHH
Confidence 54 4445555555566788888889999999999851 12246777777655433222 12222
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhccc-CCCccccHhHHHH
Q 006051 501 AVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSAT-QNAARTTVRMLES 579 (663)
Q Consensus 501 ~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~-~~~~~~t~R~Le~ 579 (663)
.+ ++-++-... -.-.+.....|...|...+..-+ ..+.-..+|.+.+
T Consensus 171 ~I-~ei~L~s~G-------------------------------F~~a~~La~kl~~l~~l~~~~lS~q~hydfgLRalk~ 218 (231)
T PF12774_consen 171 LI-AEILLLSQG-------------------------------FKDAKSLAKKLVSLFQLCKEQLSKQDHYDFGLRALKS 218 (231)
T ss_dssp HH-HHHHHHCCC-------------------------------TSSHHHHHHHHHHHHHHHHHCS-SSTT---SHHHHHH
T ss_pred HH-HHHHHHHcC-------------------------------chhHHHHHHHHHHHHHHHHHhhccCccccccHHHHHH
Confidence 22 222221110 01122334556666666555432 2345678999999
Q ss_pred HHHHHHHHHh
Q 006051 580 LIRLAQAHAR 589 (663)
Q Consensus 580 lirla~a~A~ 589 (663)
+++.|...-|
T Consensus 219 vl~~a~~~kr 228 (231)
T PF12774_consen 219 VLRMAGSLKR 228 (231)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhc
Confidence 9998876543
No 211
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.44 E-value=8.1e-07 Score=102.09 Aligned_cols=150 Identities=13% Similarity=0.124 Sum_probs=101.9
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCc
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGS 382 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~ 382 (663)
..+.+.+...|.||+.+..||.-++..... ..+.. .++.-+||.||.|+|||.||+++|.... ..++..++++
T Consensus 554 ~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~---gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse 629 (898)
T KOG1051|consen 554 KKLEERLHERVIGQDEAVAAIAAAIRRSRA---GLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSE 629 (898)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHHhhhc---ccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhh
Confidence 356777888999999999999988876421 11121 4678899999999999999999999753 3566666554
Q ss_pred ccC-----CceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEE
Q 006051 383 TSA-----GLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (663)
Q Consensus 383 ~~~-----gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iia 457 (663)
... |... ..++..+.-.-++++-.....|++||||++..++.++.|+++|+.|.++-.. |.... -.++.||.
T Consensus 630 ~~evskligsp~-gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~-Gr~Vd-~kN~I~IM 706 (898)
T KOG1051|consen 630 FQEVSKLIGSPP-GYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSH-GREVD-FKNAIFIM 706 (898)
T ss_pred hhhhhhccCCCc-ccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCC-CcEee-ccceEEEE
Confidence 221 1100 0011111101133344446689999999999999999999999999986443 33333 24678999
Q ss_pred eeCCC
Q 006051 458 ATNPK 462 (663)
Q Consensus 458 atN~~ 462 (663)
|+|-.
T Consensus 707 Tsn~~ 711 (898)
T KOG1051|consen 707 TSNVG 711 (898)
T ss_pred ecccc
Confidence 99973
No 212
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.43 E-value=5.3e-06 Score=81.79 Aligned_cols=156 Identities=18% Similarity=0.231 Sum_probs=86.9
Q ss_pred ccCchhHHHHHHH---HHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE
Q 006051 315 QVFGLFTVKLAVA---LTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 315 ~i~G~~~~K~ail---l~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~ 391 (663)
+++|.+.-|+.++ .+.+.| .+..|+||.|++|||||++++++...... .||-...
T Consensus 28 ~L~Gie~Qk~~l~~Nt~~Fl~G-----------~pannvLL~G~rGtGKSSlVkall~~y~~-----------~GLRlIe 85 (249)
T PF05673_consen 28 DLIGIERQKEALIENTEQFLQG-----------LPANNVLLWGARGTGKSSLVKALLNEYAD-----------QGLRLIE 85 (249)
T ss_pred HhcCHHHHHHHHHHHHHHHHcC-----------CCCcceEEecCCCCCHHHHHHHHHHHHhh-----------cCceEEE
Confidence 4577777777665 334444 23479999999999999999999875322 1122111
Q ss_pred eecC--chhHhhhhhhh-hccCCeeecccccccC-hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC----C
Q 006051 392 VKDG--GEWMLEAGALV-LADGGLCCIDEFDSMR-EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK----G 463 (663)
Q Consensus 392 ~~~~--~~~~~~~g~l~-~a~~gvl~iDEid~l~-~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~----g 463 (663)
+... .....-...+- ....-|+|+|++.-=. ......|..+||- .....|.++.+.||+|.. .
T Consensus 86 v~k~~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeG---------gle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 86 VSKEDLGDLPELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEG---------GLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred ECHHHhccHHHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcC---------ccccCCCcEEEEEecchhhccch
Confidence 1111 11100011111 1245699999986433 3334555555552 234458899999999983 2
Q ss_pred CCCCCCc-----cc--cccCCChhhhhhhhhhhhhcCCCChhHHH
Q 006051 464 HYDPNLS-----LS--VNTTLSGPLLSRFDIVLVLLDTKNPEWDA 501 (663)
Q Consensus 464 ~~d~~~~-----~~--~~~~l~~aLl~RFdli~~l~d~~~~~~d~ 501 (663)
.+..... +. +...=.-+|.+||.+.+.+..+..++.-+
T Consensus 157 ~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~ 201 (249)
T PF05673_consen 157 SFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLA 201 (249)
T ss_pred hhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHH
Confidence 2211111 11 11111137889999999885544444333
No 213
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.42 E-value=1.5e-06 Score=89.89 Aligned_cols=117 Identities=17% Similarity=0.150 Sum_probs=67.2
Q ss_pred CCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhh
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVL 489 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~ 489 (663)
+||+||||+++++.+-...|.++||...- -.+|.|||+.-..-....+..-..+|..|++|+ +++
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~~s--------------PiiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII 343 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESELS--------------PIIILATNRGITKIRGTDIISPHGIPLDLLDRL-LII 343 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTSTT----------------EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEE
T ss_pred cceEEecchhhccHHHHHHHHHHhcCCCC--------------cEEEEecCceeeeccCccCcCCCCCCcchHhhc-EEE
Confidence 59999999999999999999999997431 268889997411000112333457889999999 444
Q ss_pred hhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCC
Q 006051 490 VLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNA 569 (663)
Q Consensus 490 ~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~ 569 (663)
.... ++.+.+++.+..--+.-...++++|.++|....
T Consensus 344 ~t~p--------------------------------y~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig----------- 380 (398)
T PF06068_consen 344 RTKP--------------------------------YSEEEIKQILKIRAKEEDVEISEDALDLLTKIG----------- 380 (398)
T ss_dssp EE------------------------------------HHHHHHHHHHHHHHCT--B-HHHHHHHHHHH-----------
T ss_pred ECCC--------------------------------CCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHh-----------
Confidence 4422 344444544432222345678999999988773
Q ss_pred ccccHhHHHHHHHHH
Q 006051 570 ARTTVRMLESLIRLA 584 (663)
Q Consensus 570 ~~~t~R~Le~lirla 584 (663)
...++|---.|+..|
T Consensus 381 ~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 381 VETSLRYAIQLITPA 395 (398)
T ss_dssp HHS-HHHHHHCHHHH
T ss_pred hhccHHHHHHhhhhh
Confidence 234566665555544
No 214
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.40 E-value=5.9e-07 Score=98.47 Aligned_cols=24 Identities=25% Similarity=0.479 Sum_probs=21.5
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+++|+||||+|||+|++++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHH
Confidence 469999999999999999999853
No 215
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.38 E-value=9.6e-07 Score=83.33 Aligned_cols=134 Identities=19% Similarity=0.153 Sum_probs=76.8
Q ss_pred chhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEe-CCCc--------ccCCce
Q 006051 318 GLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT-GLGS--------TSAGLT 388 (663)
Q Consensus 318 G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~-~~~~--------~~~gl~ 388 (663)
||+.+++.+.-.+..+ +-+..+||+||+|+||+.+|+++++..-..-... .++. ....-.
T Consensus 1 gq~~~~~~L~~~~~~~-----------~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSG-----------RLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHHCT-----------C--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHHcC-----------CcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 7888888888777665 2224589999999999999999998532111000 0000 000011
Q ss_pred EEEeecC------chhHhh--hhhhh----hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 389 VTAVKDG------GEWMLE--AGALV----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 389 ~~~~~~~------~~~~~~--~g~l~----~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
...+... +..... ...+. .+..-|++|||+|+|+.+.+++|+..||+- +.++.+|
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEep-------------p~~~~fi 136 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEP-------------PENTYFI 136 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHST-------------TTTEEEE
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCC-------------CCCEEEE
Confidence 1111111 000000 01111 124559999999999999999999999973 3455666
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhhhhhh
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
..|+.. ..+.++++||+-.
T Consensus 137 L~t~~~------------~~il~TI~SRc~~ 155 (162)
T PF13177_consen 137 LITNNP------------SKILPTIRSRCQV 155 (162)
T ss_dssp EEES-G------------GGS-HHHHTTSEE
T ss_pred EEECCh------------HHChHHHHhhceE
Confidence 666543 2678899999843
No 216
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=4.5e-07 Score=96.25 Aligned_cols=123 Identities=24% Similarity=0.360 Sum_probs=68.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC--ceEEeCCCc--ccCCceEEEeecCchhHhhhhhhhh---ccC--Ceeecccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLGS--TSAGLTVTAVKDGGEWMLEAGALVL---ADG--GLCCIDEF 418 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~--~~~~~~~~~--~~~gl~~~~~~~~~~~~~~~g~l~~---a~~--gvl~iDEi 418 (663)
..+||+||||||||.+||.+.+++.. |-+..|.-. -..|-+...++. .+..+..-.. ++. .|+++|||
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~---LFaDAEeE~r~~g~~SgLHIIIFDEi 333 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRK---LFADAEEEQRRLGANSGLHIIIFDEI 333 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHH---HHHhHHHHHHhhCccCCceEEEehhh
Confidence 35999999999999999999998642 333322110 001111111111 1111111001 122 38999999
Q ss_pred cccC-------------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--
Q 006051 419 DSMR-------------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS-- 483 (663)
Q Consensus 419 d~l~-------------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~-- 483 (663)
|.+- ....+.|+.-|+ .+..+ .++.||+-||+..-.| .||++
T Consensus 334 DAICKqRGS~~g~TGVhD~VVNQLLsKmD----------GVeqL-NNILVIGMTNR~DlID------------EALLRPG 390 (744)
T KOG0741|consen 334 DAICKQRGSMAGSTGVHDTVVNQLLSKMD----------GVEQL-NNILVIGMTNRKDLID------------EALLRPG 390 (744)
T ss_pred HHHHHhcCCCCCCCCccHHHHHHHHHhcc----------cHHhh-hcEEEEeccCchhhHH------------HHhcCCC
Confidence 9862 223444555443 11222 3678999999974444 48888
Q ss_pred hhhhhhhhcCCCCh
Q 006051 484 RFDIVLVLLDTKNP 497 (663)
Q Consensus 484 RFdli~~l~d~~~~ 497 (663)
||.....+ ..|++
T Consensus 391 RlEVqmEI-sLPDE 403 (744)
T KOG0741|consen 391 RLEVQMEI-SLPDE 403 (744)
T ss_pred ceEEEEEE-eCCCc
Confidence 89887776 34443
No 217
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=2.3e-06 Score=90.06 Aligned_cols=143 Identities=17% Similarity=0.162 Sum_probs=86.8
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
.+|.||+.+++.+.-++..| +-++-.||+||+|+||+++|+.+++..-.... ......+..-...
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----------~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~----~~~h~D~~~~~~~ 68 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----------RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQ----QREYVDIIEFKPI 68 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----------CCCceEEeECCCCCCHHHHHHHHHHHHcCCCC----CCCCCCeEEeccc
Confidence 47889999999999988765 22245689999999999999999985321000 0000011000000
Q ss_pred cC---c-hhHhh-hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEE-EeeCCCC
Q 006051 394 DG---G-EWMLE-AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF-GATNPKG 463 (663)
Q Consensus 394 ~~---~-~~~~~-~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii-aatN~~g 463 (663)
++ + +...+ ...+ ..+..-|++||+++.|+.+..++|+..+|+- |..+.+| .|.|+.
T Consensus 69 ~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEep-------------p~~t~~il~~~~~~- 134 (313)
T PRK05564 69 NKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEP-------------PKGVFIILLCENLE- 134 (313)
T ss_pred cCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEeCChH-
Confidence 11 0 00000 0100 1245569999999999999999999999962 2333444 444442
Q ss_pred CCCCCCccccccCCChhhhhhhhhhhhhcCCCChh
Q 006051 464 HYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPE 498 (663)
Q Consensus 464 ~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~ 498 (663)
.+.+++.||+. ++.+...+..+
T Consensus 135 ------------~ll~TI~SRc~-~~~~~~~~~~~ 156 (313)
T PRK05564 135 ------------QILDTIKSRCQ-IYKLNRLSKEE 156 (313)
T ss_pred ------------hCcHHHHhhce-eeeCCCcCHHH
Confidence 56778999995 45454444333
No 218
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=98.34 E-value=7e-07 Score=94.35 Aligned_cols=138 Identities=19% Similarity=0.148 Sum_probs=81.2
Q ss_pred ccCchhHHHHHHHHHHh-CCceeecCCCCccccccc-cccccCCCchHHHHHHHHHHhcCCceEEe-C------------
Q 006051 315 QVFGLFTVKLAVALTLI-GGVQHVDASGTKVRGESH-LLLVGDPGTGKSQFLKFAAKLSNRSVITT-G------------ 379 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~-~g~~~~~~~~~~~r~~~~-iLL~G~pGtGKs~lar~ia~~~~~~~~~~-~------------ 379 (663)
+++|++.+...+..... .| +. .| +||+||||+|||++|.++|+......... .
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~-----------~~-~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~ 69 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG-----------RL-PHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIP 69 (325)
T ss_pred CcccchhHHHHHHHHHHhcC-----------CC-CceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHh
Confidence 35666666555555554 32 22 55 99999999999999999998644211000 0
Q ss_pred --CCcccCCceEEEeecCchhHhhhhhhh--------hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeec
Q 006051 380 --LGSTSAGLTVTAVKDGGEWMLEAGALV--------LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTL 449 (663)
Q Consensus 380 --~~~~~~gl~~~~~~~~~~~~~~~g~l~--------~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~ 449 (663)
.......+..+..+......-....+. ....-|++|||+|.|..+.+++++..||..
T Consensus 70 ~~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep------------- 136 (325)
T COG0470 70 AGNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEP------------- 136 (325)
T ss_pred hcCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccC-------------
Confidence 000000011111111100000111111 123459999999999999999999999974
Q ss_pred CCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhh
Q 006051 450 STRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVL 489 (663)
Q Consensus 450 ~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~ 489 (663)
+.++.+|.+||.. ..+.+++.||+-.+-
T Consensus 137 ~~~~~~il~~n~~------------~~il~tI~SRc~~i~ 164 (325)
T COG0470 137 PKNTRFILITNDP------------SKILPTIRSRCQRIR 164 (325)
T ss_pred CCCeEEEEEcCCh------------hhccchhhhcceeee
Confidence 4566888888844 245568999885443
No 219
>PHA01747 putative ATP-dependent protease
Probab=98.31 E-value=3e-06 Score=87.11 Aligned_cols=201 Identities=19% Similarity=0.195 Sum_probs=114.0
Q ss_pred HHHHhhcc--ccccCchhHHHH--HHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCC
Q 006051 305 RNAILRGI--CPQVFGLFTVKL--AVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (663)
Q Consensus 305 ~~~l~~si--~p~i~G~~~~K~--aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~ 380 (663)
.+.|+.|+ -|+-+.. ..|. .+|.-|+--++... -..+.|++=.||+|||||++.+-+..++|... +|.
T Consensus 150 iDlLlrSiGyeP~~~~~-r~k~~~l~L~RLiPlVE~~~-----~~~NyNliELgPRGTGKS~~f~eis~fsp~~i--SGG 221 (425)
T PHA01747 150 YDDLLAAFGYDTDKMIR-NDAVNRLTLPRLLPLFTSPV-----SKRPVHIIELSNRGTGKTTTFVILQELFNFRY--YTE 221 (425)
T ss_pred HHHHHHhcCCCccccCH-HHHHHHHHHHhhhhheeccC-----CCCCeeEEEecCCCCChhhHHHHhhhcCCcee--eCC
Confidence 47788887 4443333 3333 33333332222111 11458999999999999999999988888876 333
Q ss_pred CcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccC----hhhHHhHHHHHHhceeeeeccCcee--ecCCcEE
Q 006051 381 GSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR----EHDRATIHEAMEQQTISVAKAGLVT--TLSTRTI 454 (663)
Q Consensus 381 ~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~----~~~~~~L~~~me~~~i~i~k~g~~~--~~~~~~~ 454 (663)
..|.+.|......+ ..|.+.+. -++++||+..+. .+....|...|++|.++-.+.+... +..+.++
T Consensus 222 ~~TvA~LFyN~~t~------~~GLVg~~--D~VaFDEVa~i~f~~~kdiv~IMKdYMesG~FsRG~~~~ss~~sI~a~as 293 (425)
T PHA01747 222 PPTYANLVYDAKTN------ALGLVFLS--NGLIFDEIQTWKDSNMRAINSTLSTGMENCVWTRGAGTESDAATIVRCIP 293 (425)
T ss_pred CCchHHheEecCCC------ceeEEeec--cEEEEEccccccCCCHHHHHHHHHHHhhcceeecCCCCcccchhhcccee
Confidence 33333333221111 34444433 378999999976 3445667778999988544432222 5677888
Q ss_pred EEEeeCCC----CCCCCCC---c-ccc---ccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCC
Q 006051 455 IFGATNPK----GHYDPNL---S-LSV---NTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLT 523 (663)
Q Consensus 455 iiaatN~~----g~~d~~~---~-~~~---~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~ 523 (663)
++..-|.. +.|.... . +.. -..+.+||++||.++-. ..+....+.. ...
T Consensus 294 iVf~GNin~~~l~~~~~~~~l~~~Lp~~~~~r~~~sA~LDRIhi~g~--~~pkIs~d~~------------------~sG 353 (425)
T PHA01747 294 IIFAGNPDSSTLDTYQTPNYIKNYLVSYELFQSLTKAILDRIAIIIV--NEKKITYDDI------------------ISG 353 (425)
T ss_pred EEEecCCCCccccccccchhHHHhcchhhhhcccchHHhhhhhhccc--ccCcCCHHHh------------------ccc
Confidence 88888875 2332211 0 101 11236899999983322 2221111111 122
Q ss_pred CCCCHHHHHHHHHHHHcc
Q 006051 524 DIWPLAMLRRYIYFVKGY 541 (663)
Q Consensus 524 ~~~~~~~l~~~i~~~r~~ 541 (663)
..+....||.+|.+.+++
T Consensus 354 ~vL~~tilr~~i~~~q~~ 371 (425)
T PHA01747 354 RVLYPTILRGLISLVQSK 371 (425)
T ss_pred ceeHHHHHHHHHHHHHHH
Confidence 345677888888887654
No 220
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.29 E-value=6.1e-06 Score=81.92 Aligned_cols=169 Identities=21% Similarity=0.248 Sum_probs=90.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC-----Cce-EEeCCCcccCCceEEEeecCchhHhhhhhh-----hhccCCeeecc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN-----RSV-ITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-----VLADGGLCCID 416 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~-----~~~-~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l-----~~a~~gvl~iD 416 (663)
.++.|+||+|+|||+|++++++... ..+ |..... ....-......+.. ....--+++||
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~----------f~~~~~~~~~~~~~~~~~~~~~~~DlL~iD 104 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEE----------FIREFADALRDGEIEEFKDRLRSADLLIID 104 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHH----------HHHHHHHHHHTTSHHHHHHHHCTSSEEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHH----------HHHHHHHHHHcccchhhhhhhhcCCEEEEe
Confidence 4589999999999999999987532 112 211000 00000000001111 12355699999
Q ss_pred cccccChhh--HHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh--hhhhc
Q 006051 417 EFDSMREHD--RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI--VLVLL 492 (663)
Q Consensus 417 Eid~l~~~~--~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl--i~~l~ 492 (663)
+++.+.... +..+...++.-.- .| .-.|+++..++..+ ..+.+.|.|||.- ++.+
T Consensus 105 Di~~l~~~~~~q~~lf~l~n~~~~----~~-------k~li~ts~~~P~~l---------~~~~~~L~SRl~~Gl~~~l- 163 (219)
T PF00308_consen 105 DIQFLAGKQRTQEELFHLFNRLIE----SG-------KQLILTSDRPPSEL---------SGLLPDLRSRLSWGLVVEL- 163 (219)
T ss_dssp TGGGGTTHHHHHHHHHHHHHHHHH----TT-------SEEEEEESS-TTTT---------TTS-HHHHHHHHCSEEEEE-
T ss_pred cchhhcCchHHHHHHHHHHHHHHh----hC-------CeEEEEeCCCCccc---------cccChhhhhhHhhcchhhc-
Confidence 999997654 6777777765321 11 11344443444322 1356789999974 4444
Q ss_pred CCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccc
Q 006051 493 DTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAART 572 (663)
Q Consensus 493 d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~ 572 (663)
.+++.+....+..+. ++ .-...+++++.++|... .+-
T Consensus 164 ~~pd~~~r~~il~~~------------------------------a~-~~~~~l~~~v~~~l~~~------------~~~ 200 (219)
T PF00308_consen 164 QPPDDEDRRRILQKK------------------------------AK-ERGIELPEEVIEYLARR------------FRR 200 (219)
T ss_dssp ----HHHHHHHHHHH------------------------------HH-HTT--S-HHHHHHHHHH------------TTS
T ss_pred CCCCHHHHHHHHHHH------------------------------HH-HhCCCCcHHHHHHHHHh------------hcC
Confidence 333333222222211 11 12345888988888765 345
Q ss_pred cHhHHHHHHHHHHHHHhc
Q 006051 573 TVRMLESLIRLAQAHARL 590 (663)
Q Consensus 573 t~R~Le~lirla~a~A~l 590 (663)
++|.|+.++.--.+++++
T Consensus 201 ~~r~L~~~l~~l~~~~~~ 218 (219)
T PF00308_consen 201 DVRELEGALNRLDAYAQL 218 (219)
T ss_dssp SHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhc
Confidence 799999999887777764
No 221
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=2e-06 Score=91.75 Aligned_cols=154 Identities=15% Similarity=0.170 Sum_probs=89.5
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC-CceEE-------------e
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN-RSVIT-------------T 378 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~-~~~~~-------------~ 378 (663)
..+|+||+.+++.+.-++..| |-++-+||+||+|+||+++|.++++..- ..-.. +
T Consensus 18 ~~~iiGq~~~~~~L~~~~~~~-----------rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~ 86 (365)
T PRK07471 18 TTALFGHAAAEAALLDAYRSG-----------RLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAID 86 (365)
T ss_pred hhhccChHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCC
Confidence 347899999999999998876 2234599999999999999999998531 10000 0
Q ss_pred CC--------CcccCCceEEE-e-ecCch---hHhhhhh-------hh--h--ccCCeeecccccccChhhHHhHHHHHH
Q 006051 379 GL--------GSTSAGLTVTA-V-KDGGE---WMLEAGA-------LV--L--ADGGLCCIDEFDSMREHDRATIHEAME 434 (663)
Q Consensus 379 ~~--------~~~~~gl~~~~-~-~~~~~---~~~~~g~-------l~--~--a~~gvl~iDEid~l~~~~~~~L~~~me 434 (663)
+. ..+...+..-. . .+.+. ..+.... +. . ...-|++|||++.|+....++|+..+|
T Consensus 87 ~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 87 PDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred CCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 00 00011111000 0 01010 0000000 11 1 223499999999999999999999999
Q ss_pred hceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHH
Q 006051 435 QQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVV 503 (663)
Q Consensus 435 ~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i 503 (663)
+- +.++.+|.+|+..+ .+.+++.||+..+ .+...+.++....+
T Consensus 167 ep-------------p~~~~~IL~t~~~~------------~llpti~SRc~~i-~l~~l~~~~i~~~L 209 (365)
T PRK07471 167 EP-------------PARSLFLLVSHAPA------------RLLPTIRSRCRKL-RLRPLAPEDVIDAL 209 (365)
T ss_pred cC-------------CCCeEEEEEECCch------------hchHHhhccceEE-ECCCCCHHHHHHHH
Confidence 63 23445555555442 3456889998543 34344444443333
No 222
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.27 E-value=1.6e-06 Score=91.67 Aligned_cols=146 Identities=20% Similarity=0.171 Sum_probs=85.8
Q ss_pred ccCc-hhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc----eEEeCC--------C
Q 006051 315 QVFG-LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS----VITTGL--------G 381 (663)
Q Consensus 315 ~i~G-~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~----~~~~~~--------~ 381 (663)
.|.| |+.+++.+.-++..| |-++-+||+||+|+||+++|+.+++..-.. ...+|. .
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----------~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~ 74 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----------RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDS 74 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----------CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhc
Confidence 4566 888888888777654 222446999999999999999999864211 000000 0
Q ss_pred cccCCceEEEee-cC---c-hhHhh-hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCC
Q 006051 382 STSAGLTVTAVK-DG---G-EWMLE-AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLST 451 (663)
Q Consensus 382 ~~~~gl~~~~~~-~~---~-~~~~~-~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~ 451 (663)
.+...+. .+. ++ + +...+ ...+ ..+...|++|||++.|+.+.+++|+..||+- |.
T Consensus 75 ~~hpD~~--~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEP-------------p~ 139 (329)
T PRK08058 75 GNHPDVH--LVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEP-------------SG 139 (329)
T ss_pred CCCCCEE--EeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCC-------------CC
Confidence 0011111 111 11 0 00000 0111 2245569999999999999999999999972 33
Q ss_pred cEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhH
Q 006051 452 RTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEW 499 (663)
Q Consensus 452 ~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~ 499 (663)
.+.+|.+|+.. ..+.++++||+-.+ .+..+...+.
T Consensus 140 ~~~~Il~t~~~------------~~ll~TIrSRc~~i-~~~~~~~~~~ 174 (329)
T PRK08058 140 GTTAILLTENK------------HQILPTILSRCQVV-EFRPLPPESL 174 (329)
T ss_pred CceEEEEeCCh------------HhCcHHHHhhceee-eCCCCCHHHH
Confidence 44555555432 25778999999543 3434443333
No 223
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.9e-06 Score=90.09 Aligned_cols=150 Identities=13% Similarity=0.157 Sum_probs=90.1
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeC-------CCcccC
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG-------LGSTSA 385 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~-------~~~~~~ 385 (663)
+.+|+||+.++..+.-++..| |-.+..||+||+|+||+.+|.++++..-..- .+| ......
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~-----------rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~-~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQN-----------RIAPAYLFAGPEGVGRKLAALCFIEGLLSQG-SPSKNIRRRLEEGNHP 70 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-----------CCCceEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCcHhcccccCCCC
Confidence 357899999999999998775 3347899999999999999999988532110 000 000011
Q ss_pred CceE-EE--eecC-----------c-------h----hHhh-hhhh----hhccCCeeecccccccChhhHHhHHHHHHh
Q 006051 386 GLTV-TA--VKDG-----------G-------E----WMLE-AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (663)
Q Consensus 386 gl~~-~~--~~~~-----------~-------~----~~~~-~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~ 435 (663)
.+.. .- ..++ | . ..-+ ...+ ..+...|++||++++|+....++|+..||+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE 150 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC
Confidence 1100 00 0000 0 0 0000 0001 124567999999999999999999999997
Q ss_pred ceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHH
Q 006051 436 QTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDA 501 (663)
Q Consensus 436 ~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~ 501 (663)
- + ++.+|..|+.. ..+.++++||+.. +.+......+...
T Consensus 151 P-------------p-~~~fILi~~~~------------~~Ll~TI~SRcq~-i~f~~l~~~~~~~ 189 (314)
T PRK07399 151 P-------------G-NGTLILIAPSP------------ESLLPTIVSRCQI-IPFYRLSDEQLEQ 189 (314)
T ss_pred C-------------C-CCeEEEEECCh------------HhCcHHHHhhceE-EecCCCCHHHHHH
Confidence 2 2 33444444432 2677899999854 4454444444433
No 224
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.25 E-value=8.6e-06 Score=80.74 Aligned_cols=147 Identities=20% Similarity=0.184 Sum_probs=104.9
Q ss_pred cCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-----CCCCCCCccccccCCChhhhh
Q 006051 409 DGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-----GHYDPNLSLSVNTTLSGPLLS 483 (663)
Q Consensus 409 ~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-----g~~d~~~~~~~~~~l~~aLl~ 483 (663)
-+||+||||++++.-+-...|+.++|+.- .-.+|.|+|+. |.-| ...-..+++.|++
T Consensus 296 vPGVLFIDEVhMLDiEcFTyL~kalES~i--------------aPivifAsNrG~~~irGt~d----~~sPhGip~dllD 357 (456)
T KOG1942|consen 296 VPGVLFIDEVHMLDIECFTYLHKALESPI--------------APIVIFASNRGMCTIRGTED----ILSPHGIPPDLLD 357 (456)
T ss_pred cCcceEeeehhhhhhHHHHHHHHHhcCCC--------------CceEEEecCCcceeecCCcC----CCCCCCCCHHHhh
Confidence 37899999999999999999999999732 12678888873 3221 2223568899999
Q ss_pred hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHh
Q 006051 484 RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRR 563 (663)
Q Consensus 484 RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~ 563 (663)
|.-++-.+ .++ .+.++..|..-.+.-.-.++++|.++|...
T Consensus 358 Rl~Iirt~-~y~--------------------------------~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~------ 398 (456)
T KOG1942|consen 358 RLLIIRTL-PYD--------------------------------EEEIRQIIKIRAQVEGLQVEEEALDLLAEI------ 398 (456)
T ss_pred heeEEeec-cCC--------------------------------HHHHHHHHHHHHhhhcceecHHHHHHHHhh------
Confidence 98444333 333 333444432222222345788888888765
Q ss_pred cccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhhhh
Q 006051 564 SATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAI 617 (663)
Q Consensus 564 ~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~ 617 (663)
+...|+|--..|+--+--.|++++++.|..+|+.++-.|+..+..+...
T Consensus 399 -----gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~Lf~Dak~s~k~ 447 (456)
T KOG1942|consen 399 -----GTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTELFLDAKRSAKI 447 (456)
T ss_pred -----ccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHHHHhchhhHHH
Confidence 4456788888888888889999999999999999999999888766543
No 225
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=1.6e-05 Score=88.37 Aligned_cols=269 Identities=14% Similarity=0.066 Sum_probs=140.8
Q ss_pred CCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhh--hhhhccCCeeecccc
Q 006051 341 GTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAG--ALVLADGGLCCIDEF 418 (663)
Q Consensus 341 ~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g--~l~~a~~gvl~iDEi 418 (663)
+.......-+||.|+||+|||++.+++|+.++..++...+.+..+. ..+..+..+.++ ........|+|+-.+
T Consensus 425 ~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~-----s~~~~etkl~~~f~~a~~~~pavifl~~~ 499 (953)
T KOG0736|consen 425 GALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAE-----SASHTETKLQAIFSRARRCSPAVLFLRNL 499 (953)
T ss_pred hhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhc-----ccchhHHHHHHHHHHHhhcCceEEEEecc
Confidence 3334455789999999999999999999999999998766543211 111111111111 112235678888777
Q ss_pred cccChhh----HHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCC
Q 006051 419 DSMREHD----RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDT 494 (663)
Q Consensus 419 d~l~~~~----~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~ 494 (663)
|-+..+. -..++.+|+...- ......-...+.++|+++.. ..+++.+.+-|-..+.+ +.
T Consensus 500 dvl~id~dgged~rl~~~i~~~ls----~e~~~~~~~~~ivv~t~~s~------------~~lp~~i~~~f~~ei~~-~~ 562 (953)
T KOG0736|consen 500 DVLGIDQDGGEDARLLKVIRHLLS----NEDFKFSCPPVIVVATTSSI------------EDLPADIQSLFLHEIEV-PA 562 (953)
T ss_pred ceeeecCCCchhHHHHHHHHHHHh----cccccCCCCceEEEEecccc------------ccCCHHHHHhhhhhccC-CC
Confidence 7764221 1123334433211 01111113466889999875 25777888877777766 44
Q ss_pred CChhHHHHHHHHHhhhcCCCCCCC---CCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCcc
Q 006051 495 KNPEWDAVVSSHILAEGGLSEEKD---TEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAAR 571 (663)
Q Consensus 495 ~~~~~d~~i~~~il~~~~~~~~~~---~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~ 571 (663)
++++.+..+.+.+++.+....... .......++...|..|. +.+|.++...+.+--
T Consensus 563 lse~qRl~iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~~l~--------~~~s~~~~~~i~~~~------------- 621 (953)
T KOG0736|consen 563 LSEEQRLEILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLEALV--------AHSSLAAKTRIKNKG------------- 621 (953)
T ss_pred CCHHHHHHHHHHHHhccccchHHHHHHHHHhcCCCCHHHHHHHh--------cCchHHHHHHHHhhc-------------
Confidence 555544555555554443211000 00112223333443332 112333333222110
Q ss_pred ccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhhhhhhhhHhhhhhcCCCChhHHHHHHHHHHHHHhccC
Q 006051 572 TTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGNALHSNFTENPDLENAKQEKLILDKLRSF 651 (663)
Q Consensus 572 ~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 651 (663)
..+.+ .....-+...-...++++|+..|+.-++....++--.+.+.+ ..|-. -.-++..-..|+++++++
T Consensus 622 -l~g~~----~~~~~~~~~~~~~~l~~edf~kals~~~~~fs~aiGAPKIPn--V~WdD---VGGLeevK~eIldTIqlP 691 (953)
T KOG0736|consen 622 -LAGGL----QEEDEGELCAAGFLLTEEDFDKALSRLQKEFSDAIGAPKIPN--VSWDD---VGGLEEVKTEILDTIQLP 691 (953)
T ss_pred -ccccc----hhccccccccccceecHHHHHHHHHHHHHhhhhhcCCCCCCc--cchhc---ccCHHHHHHHHHHHhcCc
Confidence 00000 000011111223688999999999988777766311111111 01111 123566777899999999
Q ss_pred CcccccccccC
Q 006051 652 DEFPDIISTQE 662 (663)
Q Consensus 652 ~~~~~~~~~~~ 662 (663)
+..|.++|...
T Consensus 692 L~hpeLfssgl 702 (953)
T KOG0736|consen 692 LKHPELFSSGL 702 (953)
T ss_pred ccChhhhhccc
Confidence 99999999763
No 226
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=98.23 E-value=2.6e-05 Score=86.56 Aligned_cols=260 Identities=15% Similarity=0.198 Sum_probs=148.4
Q ss_pred HHHHHHHHHhhcCCchhhHHHHhhcc--ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHH
Q 006051 287 IMQFKQFWSEFKDTPLKGRNAILRGI--CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFL 364 (663)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~si--~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la 364 (663)
.+.+.+-.+.+..++| .+.|+.|+ -|+-+.. ..|..++.-|+=-+ ..+.|++=.||.|||||.+-
T Consensus 167 l~~~~~~R~~FT~dEW--id~LlrSiG~eP~~~~~-r~K~~~L~RliPlV----------E~N~Nl~ELgPrgTGKS~~y 233 (675)
T TIGR02653 167 MNEVFEGRRHFTSDEW--IDVLLRSVGMEPTNLER-RTKWHLLTRLIPLV----------ENNYNLCELGPRGTGKSHVY 233 (675)
T ss_pred HHHHHHHHHhCCHHHH--HHHHHHhcCCCccccCH-HHHHHHHHhhhhhc----------ccccceEEECCCCCCcceee
Confidence 3344443344444555 37788887 5655543 67777666554432 33589999999999999997
Q ss_pred HHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccC---hhhHHhHHHHHHhceeeee
Q 006051 365 KFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR---EHDRATIHEAMEQQTISVA 441 (663)
Q Consensus 365 r~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~---~~~~~~L~~~me~~~i~i~ 441 (663)
+ +++|.+.+.+|...|.+.|......+ +.|.+.. --++++||+..+. ++....|-..|++|.++
T Consensus 234 ~---eiSp~~~liSGG~~T~A~LFyn~~~~------~~GlVg~--~D~VaFDEva~i~f~d~d~v~imK~YM~sG~Fs-- 300 (675)
T TIGR02653 234 K---ECSPNSILMSGGQTTVANLFYNMSTR------QIGLVGM--WDVVAFDEVAGIEFKDKDGVQIMKDYMASGSFA-- 300 (675)
T ss_pred e---ccCCceEEEECCccchhHeeEEcCCC------ceeEEee--ccEEEEeeccccccCCHHHHHHHHHHhhcCccc--
Confidence 6 77889998887666666555432222 2344332 2389999998864 34455677789999874
Q ss_pred ccCceeecCCcEEEEEeeCCC---CCCCCCCcc----ccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCC
Q 006051 442 KAGLVTTLSTRTIIFGATNPK---GHYDPNLSL----SVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLS 514 (663)
Q Consensus 442 k~g~~~~~~~~~~iiaatN~~---g~~d~~~~~----~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~ 514 (663)
+++.. ..+.++++.--|-. ........+ -....-..||++||.-.+.=++.|.- ...++
T Consensus 301 RG~~~--~~a~as~vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yiPGWeiPk~------~~e~~------ 366 (675)
T TIGR02653 301 RGKES--IEGKASIVFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYIPGWEIPKM------RPEYF------ 366 (675)
T ss_pred ccccc--cccceeEEEEcccCCchHHHhhcccccccCChhhcccchHHHHhhccCcCCcCccC------CHHHc------
Confidence 33332 33444554444432 111000000 00011135788888654433222221 00111
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccC-C
Q 006051 515 EEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMF-R 593 (663)
Q Consensus 515 ~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~-~ 593 (663)
.....+..|.|.+++...|+. +-.+.+.+++.. +...+.|.-+++.|+.-+..||-+ .
T Consensus 367 ------t~~yGl~~DylsE~l~~lR~~-------~~~~~~~~~~~l--------~~~~~~RD~~aV~kt~SgllKLl~P~ 425 (675)
T TIGR02653 367 ------TNRYGFIVDYLAEYMREMRKR-------SFADAIDRFFKL--------GNNLNQRDVIAVRKTVSGLLKLLYPD 425 (675)
T ss_pred ------ccCCcchHHHHHHHHHHHHhh-------hHHHHHHhhEec--------CCCCchhhHHHHHHHHHHHHHHhCCC
Confidence 111235566666666655521 122333333211 345788999999999999999844 5
Q ss_pred CccChhhHHHHHHH
Q 006051 594 NEVTRLDAITAILC 607 (663)
Q Consensus 594 ~~V~~~Dv~~Ai~l 607 (663)
..++.+|+++++++
T Consensus 426 ~~~~~ee~e~~l~~ 439 (675)
T TIGR02653 426 GEYTKDDVRECLTY 439 (675)
T ss_pred CCCCHHHHHHHHHH
Confidence 67899998875544
No 227
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.11 E-value=6.3e-06 Score=79.90 Aligned_cols=118 Identities=18% Similarity=0.153 Sum_probs=66.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC--CCc----------ccCCceEEEeec--Cc-hhH----hhhhhh-hh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG--LGS----------TSAGLTVTAVKD--GG-EWM----LEAGAL-VL 407 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~--~~~----------~~~gl~~~~~~~--~~-~~~----~~~g~l-~~ 407 (663)
..+||+||||+|||++++.+++.....--..+ ++. ....+....... .+ +.. -..... ..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 45999999999999999999886432100000 000 000010000000 01 010 001111 12
Q ss_pred ccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh
Q 006051 408 ADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 408 a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
+...|++|||++.+..+.++.|+..||+. +..+.+|.++|.. ..+.+++.+|+.
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~-------------~~~~~~il~~~~~------------~~l~~~i~sr~~- 148 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEP-------------PPNTLFILITPSP------------EKLLPTIRSRCQ- 148 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECCh------------HhChHHHHhhcE-
Confidence 34569999999999999999999999863 2344566666532 145678999985
Q ss_pred hhhh
Q 006051 488 VLVL 491 (663)
Q Consensus 488 i~~l 491 (663)
++.+
T Consensus 149 ~~~~ 152 (188)
T TIGR00678 149 VLPF 152 (188)
T ss_pred EeeC
Confidence 3434
No 228
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.11 E-value=4.1e-05 Score=74.31 Aligned_cols=117 Identities=20% Similarity=0.240 Sum_probs=72.0
Q ss_pred ccCchhHHHHHHH---HHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceE-E
Q 006051 315 QVFGLFTVKLAVA---LTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV-T 390 (663)
Q Consensus 315 ~i~G~~~~K~ail---l~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~-~ 390 (663)
++.|.+..|++++ ..++.| .+-.||||.|..|||||+|.|++....... |+.. .
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G-----------~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-----------glrLVE 118 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEG-----------LPANNVLLWGARGTGKSSLVKALLNEYADE-----------GLRLVE 118 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcC-----------CcccceEEecCCCCChHHHHHHHHHHHHhc-----------CCeEEE
Confidence 4689999999887 445554 233799999999999999999998753211 1111 1
Q ss_pred EeecC-chhHhhhhhhh-hccCCeeecccccccC-hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 391 AVKDG-GEWMLEAGALV-LADGGLCCIDEFDSMR-EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 391 ~~~~~-~~~~~~~g~l~-~a~~gvl~iDEid~l~-~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
..++. .....-.+.+- ....-|+|+|++.-=. .+...+|-.+|| |.....|.++.|.||+|+.
T Consensus 119 V~k~dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~Le---------G~ve~rP~NVl~YATSNRR 184 (287)
T COG2607 119 VDKEDLATLPDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALE---------GGVEGRPANVLFYATSNRR 184 (287)
T ss_pred EcHHHHhhHHHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhc---------CCcccCCCeEEEEEecCCc
Confidence 11111 11100011111 2345699999986543 334455666665 3334568999999999984
No 229
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.10 E-value=1e-05 Score=81.60 Aligned_cols=111 Identities=23% Similarity=0.225 Sum_probs=69.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchh--Hhhhhhhh--------hccCCeeeccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEW--MLEAGALV--------LADGGLCCIDE 417 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~--~~~~g~l~--------~a~~gvl~iDE 417 (663)
.|+|++||||||||....+.++.+..+ .+.++....+.++..++.+.. ...--+.. .+.-..+++||
T Consensus 63 Ph~L~YgPPGtGktsti~a~a~~ly~~---~~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDE 139 (360)
T KOG0990|consen 63 PHLLFYGPPGTGKTSTILANARDFYSP---HPTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDE 139 (360)
T ss_pred CcccccCCCCCCCCCchhhhhhhhcCC---CCchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecc
Confidence 599999999999999999998876553 111111111222222221100 00001111 12345789999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd 486 (663)
.|.|..+.|++|.+++|.-+ +++.|..-+|+. ..+.+++.+||-
T Consensus 140 ADaMT~~AQnALRRviek~t-------------~n~rF~ii~n~~------------~ki~pa~qsRct 183 (360)
T KOG0990|consen 140 ADAMTRDAQNALRRVIEKYT-------------ANTRFATISNPP------------QKIHPAQQSRCT 183 (360)
T ss_pred hhHhhHHHHHHHHHHHHHhc-------------cceEEEEeccCh------------hhcCchhhcccc
Confidence 99999999999999777643 455666666775 356789999885
No 230
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.06 E-value=7.8e-06 Score=85.94 Aligned_cols=126 Identities=17% Similarity=0.124 Sum_probs=72.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCC--c--eEEeCC--------CcccCCceEEEeec----Cc--hhHhhhhhhh--
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR--S--VITTGL--------GSTSAGLTVTAVKD----GG--EWMLEAGALV-- 406 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~--~--~~~~~~--------~~~~~gl~~~~~~~----~~--~~~~~~g~l~-- 406 (663)
.+.+||.||+|+||+++|+.+|+..-- + .-.+|. ..+...+..-.-.+ .+ +...-...+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 356999999999999999999985421 0 000100 00111111100000 00 0000011111
Q ss_pred --hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhh
Q 006051 407 --LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSR 484 (663)
Q Consensus 407 --~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~R 484 (663)
.+..-|++||++++|+....++|+..||+- +.++.+|.+|+.. ..+.++++||
T Consensus 102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEP-------------p~~~~fiL~t~~~------------~~ll~TI~SR 156 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEEP-------------SGDTVLLLISHQP------------SRLLPTIKSR 156 (328)
T ss_pred cccCCCeEEEECChhhCCHHHHHHHHHHHhCC-------------CCCeEEEEEECCh------------hhCcHHHHhh
Confidence 234569999999999999999999999973 2344555555543 2577899999
Q ss_pred hhhhhhhcCCCChh
Q 006051 485 FDIVLVLLDTKNPE 498 (663)
Q Consensus 485 Fdli~~l~d~~~~~ 498 (663)
+.. +.+..+..++
T Consensus 157 c~~-~~~~~~~~~~ 169 (328)
T PRK05707 157 CQQ-QACPLPSNEE 169 (328)
T ss_pred cee-eeCCCcCHHH
Confidence 976 4443333333
No 231
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.00 E-value=8.4e-05 Score=81.72 Aligned_cols=77 Identities=18% Similarity=0.185 Sum_probs=56.0
Q ss_pred hhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC--CCCCCCCccccccCCCh
Q 006051 402 AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK--GHYDPNLSLSVNTTLSG 479 (663)
Q Consensus 402 ~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~--g~~d~~~~~~~~~~l~~ 479 (663)
.|++..|++|++=+=|+-+.+.+....|+.+-++|.+.. .+....++.+-.|||.||.. ..|. +..-..
T Consensus 248 ~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~--~~~~~~i~~D~vIiaHsNE~E~~~F~-------~nk~nE 318 (644)
T PRK15455 248 SGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNG--TEGIGAIPFDGIILAHSNESEWQTFR-------NNKNNE 318 (644)
T ss_pred CchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccC--CCCcceeccceeEEecCCHHHHHHHh-------cCccch
Confidence 477888888877666999999988888888888888732 23334568888999999975 2222 223446
Q ss_pred hhhhhhhh
Q 006051 480 PLLSRFDI 487 (663)
Q Consensus 480 aLl~RFdl 487 (663)
||++|.-+
T Consensus 319 A~~DRi~~ 326 (644)
T PRK15455 319 AFLDRIYI 326 (644)
T ss_pred hhhceEEE
Confidence 89999854
No 232
>PRK12377 putative replication protein; Provisional
Probab=97.92 E-value=2.1e-06 Score=86.36 Aligned_cols=99 Identities=20% Similarity=0.274 Sum_probs=57.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecCchhHhhhhhh-hhccCCeeecccccc--c
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDS--M 421 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l-~~a~~gvl~iDEid~--l 421 (663)
.+++|+||||||||+||.++++.+.. ++...........+..+ .+.+.. ....+ .+.+--+++|||++. .
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--~~~~~~--~~~~l~~l~~~dLLiIDDlg~~~~ 177 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--YDNGQS--GEKFLQELCKVDLLVLDEIGIQRE 177 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--Hhccch--HHHHHHHhcCCCEEEEcCCCCCCC
Confidence 58999999999999999999986532 22111000000000000 000100 00111 134567999999955 4
Q ss_pred ChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 422 REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 422 ~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
++..+..|+++++.+.- ....+|.|||..
T Consensus 178 s~~~~~~l~~ii~~R~~------------~~~ptiitSNl~ 206 (248)
T PRK12377 178 TKNEQVVLNQIIDRRTA------------SMRSVGMLTNLN 206 (248)
T ss_pred CHHHHHHHHHHHHHHHh------------cCCCEEEEcCCC
Confidence 56677889999987642 223567889975
No 233
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=97.91 E-value=0.00015 Score=72.32 Aligned_cols=183 Identities=17% Similarity=0.117 Sum_probs=119.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
.-.||.|++|-=|+..=..+-.- --+|..+..+ .--+||+||||..++.-+-..
T Consensus 253 ~lALFsGdTGEIr~EvRdqin~K------------------------V~eWreEGKA--eivpGVLFIDEvHMLDIEcFs 306 (454)
T KOG2680|consen 253 FLALFSGDTGEIRSEVRDQINTK------------------------VAEWREEGKA--EIVPGVLFIDEVHMLDIECFS 306 (454)
T ss_pred eEEEEeCCcccccHHHHHHHHHH------------------------HHHHHhcCCe--eeccceEEEeeehhhhhHHHH
Confidence 44688899988777654333210 0234322211 124799999999999999999
Q ss_pred hHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHH
Q 006051 428 TIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSH 506 (663)
Q Consensus 428 ~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~ 506 (663)
.|.+++|+-.- | .++.|||+. .+.. ...+..-..+|..|++|. +++....
T Consensus 307 FlNrAlE~d~~-----------P---iiimaTNrgit~iR-GTn~~SphGiP~D~lDR~-lII~t~p------------- 357 (454)
T KOG2680|consen 307 FLNRALENDMA-----------P---IIIMATNRGITRIR-GTNYRSPHGIPIDLLDRM-LIISTQP------------- 357 (454)
T ss_pred HHHHHhhhccC-----------c---EEEEEcCCceEEee-cCCCCCCCCCcHHHhhhh-heeeccc-------------
Confidence 99999997431 1 677788873 1100 011222346888899987 3333323
Q ss_pred HhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHH
Q 006051 507 ILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQA 586 (663)
Q Consensus 507 il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a 586 (663)
++.+++++.+..--..-...++++|.++|... +...++|--..||..|..
T Consensus 358 -------------------y~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i-----------~~~tsLRYai~Lit~a~~ 407 (454)
T KOG2680|consen 358 -------------------YTEEDIKKILRIRCQEEDVEMNPDALDLLTKI-----------GEATSLRYAIHLITAASL 407 (454)
T ss_pred -------------------CcHHHHHHHHHhhhhhhccccCHHHHHHHHHh-----------hhhhhHHHHHHHHHHHHH
Confidence 33333444332211122456889999998876 344578888899999998
Q ss_pred HHhccCCCccChhhHHHHHHHHHhhhhhh
Q 006051 587 HARLMFRNEVTRLDAITAILCIESSMTTS 615 (663)
Q Consensus 587 ~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~ 615 (663)
.+.-+-..+|+.+|+..|.+|+-....+.
T Consensus 408 ~~~krk~~~v~~~di~r~y~LFlD~~Rs~ 436 (454)
T KOG2680|consen 408 VCLKRKGKVVEVDDIERVYRLFLDEKRSM 436 (454)
T ss_pred HHHHhcCceeehhHHHHHHHHHhhhhhhh
Confidence 88888899999999999999987666553
No 234
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=97.90 E-value=1.2e-05 Score=70.23 Aligned_cols=98 Identities=18% Similarity=0.297 Sum_probs=57.0
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC-chhHhhhhhhhhccCCeeecccccccChh----
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREH---- 424 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~-~~~~~~~g~l~~a~~gvl~iDEid~l~~~---- 424 (663)
|.|+|+||+|||.+++.+++......-... .... ..+.. .++. -|- ....++++||+......
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~----~~~v---y~~~~~~~~w--~gY---~~q~vvi~DD~~~~~~~~~~~ 68 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT----KDSV---YTRNPGDKFW--DGY---QGQPVVIIDDFGQDNDGYNYS 68 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC----CCcE---EeCCCccchh--hcc---CCCcEEEEeecCccccccchH
Confidence 578999999999999998875433220000 0000 00111 1111 111 13468999999998754
Q ss_pred hHHhHHHHHHhceeeeeccCce---eecCCcEEEEEeeC
Q 006051 425 DRATIHEAMEQQTISVAKAGLV---TTLSTRTIIFGATN 460 (663)
Q Consensus 425 ~~~~L~~~me~~~i~i~k~g~~---~~~~~~~~iiaatN 460 (663)
....+.+++..-.+....++.. ..+++. .||++||
T Consensus 69 ~~~~l~~l~s~~~~~~~~a~~~~K~~~~~s~-~vi~tsN 106 (107)
T PF00910_consen 69 DESELIRLISSNPFQPNMADLEDKGTPFNSK-LVIITSN 106 (107)
T ss_pred HHHHHHHHHhcCCcccccccHhhCCCccCCC-EEEEcCC
Confidence 5566777777777666544433 334444 6778887
No 235
>PRK06526 transposase; Provisional
Probab=97.86 E-value=5.6e-06 Score=83.85 Aligned_cols=116 Identities=17% Similarity=0.177 Sum_probs=63.5
Q ss_pred HHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee---cCchh
Q 006051 322 VKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK---DGGEW 398 (663)
Q Consensus 322 ~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~---~~~~~ 398 (663)
+.+..+..|..+ .+++...|++|+||||||||.|+.+++..+-..-+.+... +...+.. .+. ..+..
T Consensus 81 ~~~~~~~~l~~~--------~fi~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~-t~~~l~~-~l~~~~~~~~~ 150 (254)
T PRK06526 81 LKRDTIAHLGTL--------DFVTGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFA-TAAQWVA-RLAAAHHAGRL 150 (254)
T ss_pred cchHHHHHHhcC--------chhhcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhh-hHHHHHH-HHHHHHhcCcH
Confidence 444555555543 3455668999999999999999999987532211111000 0000000 000 00100
Q ss_pred HhhhhhhhhccCCeeecccccccC--hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 399 MLEAGALVLADGGLCCIDEFDSMR--EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 399 ~~~~g~l~~a~~gvl~iDEid~l~--~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
....-.+....+++|||++..+ +..+..|+++++...- +.++|.++|.+
T Consensus 151 --~~~l~~l~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~-------------~~s~IitSn~~ 201 (254)
T PRK06526 151 --QAELVKLGRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYE-------------RASLIVTSNKP 201 (254)
T ss_pred --HHHHHHhccCCEEEEcccccCCCCHHHHHHHHHHHHHHHh-------------cCCEEEEcCCC
Confidence 0001112345799999999875 4556678888875431 11577788865
No 236
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.84 E-value=0.00038 Score=74.32 Aligned_cols=196 Identities=16% Similarity=0.143 Sum_probs=103.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcC----CceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~----~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~ 423 (663)
-+++|+|++|.|||+|++++++.+- ..-+..-.......-.+..+++++...++ .. . +-.+++||+++.+..
T Consensus 114 nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~~~~~~~Fk--~~-y-~~dlllIDDiq~l~g 189 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALRDNEMEKFK--EK-Y-SLDLLLIDDIQFLAG 189 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHHhhhHHHHH--Hh-h-ccCeeeechHhHhcC
Confidence 6799999999999999999997532 22111100000000000000000000000 00 0 345899999999865
Q ss_pred h--hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeC-CCCCCCCCCccccccCCChhhhhhhhhhhhhc-CCCChhH
Q 006051 424 H--DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN-PKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLL-DTKNPEW 499 (663)
Q Consensus 424 ~--~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN-~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~-d~~~~~~ 499 (663)
. .+..++.....-. . ... .++.|+. ++..+ ..+.+.|.|||.--..+. .+++.+.
T Consensus 190 k~~~qeefFh~FN~l~----~-------~~k-qIvltsdr~P~~l---------~~~~~rL~SR~~~Gl~~~I~~Pd~e~ 248 (408)
T COG0593 190 KERTQEEFFHTFNALL----E-------NGK-QIVLTSDRPPKEL---------NGLEDRLRSRLEWGLVVEIEPPDDET 248 (408)
T ss_pred ChhHHHHHHHHHHHHH----h-------cCC-EEEEEcCCCchhh---------ccccHHHHHHHhceeEEeeCCCCHHH
Confidence 4 3555555444211 0 111 4455554 33221 235578999998544331 2233222
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHH
Q 006051 500 DAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLES 579 (663)
Q Consensus 500 d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~ 579 (663)
...+ + ++- + ..-...+++++...|... ..-++|+|+.
T Consensus 249 r~ai----L-----------------------~kk---a-~~~~~~i~~ev~~~la~~------------~~~nvReLeg 285 (408)
T COG0593 249 RLAI----L-----------------------RKK---A-EDRGIEIPDEVLEFLAKR------------LDRNVRELEG 285 (408)
T ss_pred HHHH----H-----------------------HHH---H-HhcCCCCCHHHHHHHHHH------------hhccHHHHHH
Confidence 2211 1 110 0 112345777877777654 2335888888
Q ss_pred HHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 580 LIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 580 lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
.+...-+.|....+ .+|..-+.++.+-+..+.
T Consensus 286 aL~~l~~~a~~~~~-~iTi~~v~e~L~~~~~~~ 317 (408)
T COG0593 286 ALNRLDAFALFTKR-AITIDLVKEILKDLLRAG 317 (408)
T ss_pred HHHHHHHHHHhcCc-cCcHHHHHHHHHHhhccc
Confidence 88777777777766 778888887777666553
No 237
>PRK08116 hypothetical protein; Validated
Probab=97.80 E-value=1.1e-05 Score=82.71 Aligned_cols=101 Identities=22% Similarity=0.220 Sum_probs=56.9
Q ss_pred cccccccCCCchHHHHHHHHHHhc---CCceEEeCCCcccCCceEEEeecCchhHhhhhhh-hhccCCeeeccccc--cc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFD--SM 421 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l-~~a~~gvl~iDEid--~l 421 (663)
.+++|+|+||||||+||.++++.+ +.+++..........+..+. .+.+... ....+ .+.+..+++|||++ ..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~-~~~~~~~-~~~~~~~l~~~dlLviDDlg~e~~ 192 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTY-KSSGKED-ENEIIRSLVNADLLILDDLGAERD 192 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH-hcccccc-HHHHHHHhcCCCEEEEecccCCCC
Confidence 569999999999999999999864 23332211100000000000 0000000 01111 13456799999995 45
Q ss_pred ChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 422 REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 422 ~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
++..+..|+++++.+. .....+|.|||..
T Consensus 193 t~~~~~~l~~iin~r~------------~~~~~~IiTsN~~ 221 (268)
T PRK08116 193 TEWAREKVYNIIDSRY------------RKGLPTIVTTNLS 221 (268)
T ss_pred CHHHHHHHHHHHHHHH------------HCCCCEEEECCCC
Confidence 6667788998888653 1222578888864
No 238
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.78 E-value=1.4e-05 Score=97.65 Aligned_cols=148 Identities=19% Similarity=0.332 Sum_probs=109.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCC--ceE-EEeecCchhHhhhhhhhhc--cCCeeecccccccC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAG--LTV-TAVKDGGEWMLEAGALVLA--DGGLCCIDEFDSMR 422 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~g--l~~-~~~~~~~~~~~~~g~l~~a--~~gvl~iDEid~l~ 422 (663)
.++||.||.|+|||.+++++|+..++.+..........- +.. ......|....+.|.++.| +|..+++||++..+
T Consensus 441 ~pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g~l~freg~LV~Alr~G~~~vlD~lnla~ 520 (1856)
T KOG1808|consen 441 FPILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNGDLVFREGVLVQALRNGDWIVLDELNLAP 520 (1856)
T ss_pred CCeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCCCeeeehhHHHHHHHhCCEEEeccccccc
Confidence 789999999999999999999998877766543322110 111 1112235555677888766 78899999999999
Q ss_pred hhhHHhHHHHHHh-ceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHH
Q 006051 423 EHDRATIHEAMEQ-QTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDA 501 (663)
Q Consensus 423 ~~~~~~L~~~me~-~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~ 501 (663)
.+...+|.+.++. +.+.+...........++.++|+-||.|.|... ..++.++++||.-+... +.+.++...
T Consensus 521 ~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~gr------k~lsRa~~~rf~e~~f~-~~~e~e~~~ 593 (1856)
T KOG1808|consen 521 HDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGR------KILSRALRNRFIELHFD-DIGEEELEE 593 (1856)
T ss_pred hHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchh------hhhhhcccccchhhhhh-hcCchhhhh
Confidence 9999999999987 888777776677777888999999999766542 35778999999755443 555554444
Q ss_pred H
Q 006051 502 V 502 (663)
Q Consensus 502 ~ 502 (663)
+
T Consensus 594 i 594 (1856)
T KOG1808|consen 594 I 594 (1856)
T ss_pred h
Confidence 3
No 239
>PRK08181 transposase; Validated
Probab=97.75 E-value=5.3e-06 Score=84.48 Aligned_cols=118 Identities=20% Similarity=0.268 Sum_probs=62.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC-chhHhhhhhhhhccCCeeecccccccC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMR 422 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~-~~~~~~~g~l~~a~~gvl~iDEid~l~ 422 (663)
..|++|+||||||||+|+.+++..+- ..++.... ..+.. .++.. .+.....-.-.+...-+++|||++..+
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~----~~L~~-~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRT----TDLVQ-KLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeH----HHHHH-HHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 36899999999999999999987432 22221110 00000 00000 000000000012345699999999875
Q ss_pred hh--hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhh
Q 006051 423 EH--DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRF 485 (663)
Q Consensus 423 ~~--~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RF 485 (663)
.+ .+..|+++++...- +.++|.|+|.. +.|... .....+..+++||.
T Consensus 181 ~~~~~~~~Lf~lin~R~~-------------~~s~IiTSN~~~~~w~~~---~~D~~~a~aildRL 230 (269)
T PRK08181 181 KDQAETSVLFELISARYE-------------RRSILITANQPFGEWNRV---FPDPAMTLAAVDRL 230 (269)
T ss_pred CCHHHHHHHHHHHHHHHh-------------CCCEEEEcCCCHHHHHHh---cCCccchhhHHHhh
Confidence 54 44578888886431 12577888865 322210 01123445667776
No 240
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.70 E-value=9.6e-05 Score=73.14 Aligned_cols=91 Identities=19% Similarity=0.269 Sum_probs=64.1
Q ss_pred CeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhh
Q 006051 411 GLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLV 490 (663)
Q Consensus 411 gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~ 490 (663)
.|++|-|.|.+..+.|.+|.+.||. +...|++|..+|.. ..+-+|+.||+ +.+.
T Consensus 129 Kvvvi~ead~LT~dAQ~aLRRTMEk-------------Ys~~~RlIl~cns~------------SriIepIrSRC-l~iR 182 (351)
T KOG2035|consen 129 KVVVINEADELTRDAQHALRRTMEK-------------YSSNCRLILVCNST------------SRIIEPIRSRC-LFIR 182 (351)
T ss_pred EEEEEechHhhhHHHHHHHHHHHHH-------------HhcCceEEEEecCc------------ccchhHHhhhe-eEEe
Confidence 5899999999999999999999995 24567899999975 35667999998 5556
Q ss_pred hcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 006051 491 LLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVK 539 (663)
Q Consensus 491 l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r 539 (663)
+.-+.+++.-..+..-+.+. .-.++.+.+.+...-+.
T Consensus 183 vpaps~eeI~~vl~~v~~kE------------~l~lp~~~l~rIa~kS~ 219 (351)
T KOG2035|consen 183 VPAPSDEEITSVLSKVLKKE------------GLQLPKELLKRIAEKSN 219 (351)
T ss_pred CCCCCHHHHHHHHHHHHHHh------------cccCcHHHHHHHHHHhc
Confidence 66666666655554333221 12356666666655443
No 241
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=0.00033 Score=79.46 Aligned_cols=55 Identities=22% Similarity=0.097 Sum_probs=36.6
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~ 374 (663)
..++.|++.....+.-.+...... .....-++|+||||+|||++++.+++.....
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~-------~~~~~illL~GP~GsGKTTl~~~la~~l~~~ 137 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLE-------NAPKRILLITGPSGCGKSTTIKILSKELGIQ 137 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-------cCCCcEEEEECCCCCCHHHHHHHHHHHhhhH
Confidence 346788887666655555432110 1111238999999999999999999876643
No 242
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=97.69 E-value=9.5e-06 Score=77.73 Aligned_cols=100 Identities=19% Similarity=0.243 Sum_probs=53.0
Q ss_pred cccccccccCCCchHHHHHHHHHHhc---CCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR 422 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~ 422 (663)
...|++|+|+||||||.||-++++.+ +.++...........+..+ ...+...-... .+.+-.+++|||+...+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--~~~~~~~~~~~--~l~~~dlLilDDlG~~~ 121 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--RSDGSYEELLK--RLKRVDLLILDDLGYEP 121 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--HCCTTHCHHHH--HHHTSSCEEEETCTSS-
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--ccccchhhhcC--ccccccEecccccceee
Confidence 34789999999999999999998643 2222211110000000000 00111100011 23455799999998754
Q ss_pred --hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 423 --EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 423 --~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
......++++++.+. ..+ ..|.|||..
T Consensus 122 ~~~~~~~~l~~ii~~R~------------~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 122 LSEWEAELLFEIIDERY------------ERK-PTIITSNLS 150 (178)
T ss_dssp --HHHHHCTHHHHHHHH------------HT--EEEEEESS-
T ss_pred ecccccccchhhhhHhh------------ccc-CeEeeCCCc
Confidence 445667888887653 112 466699975
No 243
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.67 E-value=0.00023 Score=74.30 Aligned_cols=55 Identities=13% Similarity=0.204 Sum_probs=42.5
Q ss_pred CCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhh
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVL 489 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~ 489 (663)
.-|++||+.|+|+....++|+..||+- +.++.+|..|+.. ..+.++++||+..+-
T Consensus 114 ~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~~~fiL~~~~~------------~~lLpTIrSRCq~i~ 168 (319)
T PRK08769 114 AQVVIVDPADAINRAACNALLKTLEEP-------------SPGRYLWLISAQP------------ARLPATIRSRCQRLE 168 (319)
T ss_pred cEEEEeccHhhhCHHHHHHHHHHhhCC-------------CCCCeEEEEECCh------------hhCchHHHhhheEee
Confidence 459999999999999999999999973 3455565556543 257789999996544
No 244
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.65 E-value=0.00012 Score=76.44 Aligned_cols=124 Identities=15% Similarity=0.193 Sum_probs=71.2
Q ss_pred cccccccccCCCchHHHHHHHHHHhcCC----ceEEeCC--------CcccCCceEEEeecC---chhHhh--hhhhh--
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGL--------GSTSAGLTVTAVKDG---GEWMLE--AGALV-- 406 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~~----~~~~~~~--------~~~~~gl~~~~~~~~---~~~~~~--~g~l~-- 406 (663)
-++-+||.||+|+||+.+|+.+|+..-- ..-.+|. .++...+..-.-.++ +.-..+ ...+.
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~~ 102 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQH 102 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhhc
Confidence 3467889999999999999999985321 1001110 011111111100011 100001 01111
Q ss_pred --hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEee-CCCCCCCCCCccccccCCChhhhh
Q 006051 407 --LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT-NPKGHYDPNLSLSVNTTLSGPLLS 483 (663)
Q Consensus 407 --~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat-N~~g~~d~~~~~~~~~~l~~aLl~ 483 (663)
.+...|++||++++|+....++|+..||+- |.++.+|.+| |+. .+.++++|
T Consensus 103 ~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEP-------------p~~~~fiL~t~~~~-------------~llpTI~S 156 (325)
T PRK06871 103 AQQGGNKVVYIQGAERLTEAAANALLKTLEEP-------------RPNTYFLLQADLSA-------------ALLPTIYS 156 (325)
T ss_pred cccCCceEEEEechhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChH-------------hCchHHHh
Confidence 123459999999999999999999999973 3344555544 543 67789999
Q ss_pred hhhhhhhhcCCCC
Q 006051 484 RFDIVLVLLDTKN 496 (663)
Q Consensus 484 RFdli~~l~d~~~ 496 (663)
|+-.+ .+..++.
T Consensus 157 RC~~~-~~~~~~~ 168 (325)
T PRK06871 157 RCQTW-LIHPPEE 168 (325)
T ss_pred hceEE-eCCCCCH
Confidence 98544 3433333
No 245
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.65 E-value=0.00015 Score=75.30 Aligned_cols=85 Identities=13% Similarity=0.143 Sum_probs=60.5
Q ss_pred hhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC--CCCCCCCccccccCCCh
Q 006051 402 AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK--GHYDPNLSLSVNTTLSG 479 (663)
Q Consensus 402 ~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~--g~~d~~~~~~~~~~l~~ 479 (663)
.|.+..|++|++=+=|+-+.+.+....|+.+.++|.+... +.....+.+..|||.||+. ..|.. ..-.+
T Consensus 226 ~G~l~~aNrGi~ef~E~~K~~~~~L~~LL~~tqEg~ik~~--~~~~~i~~D~liiAhsNe~E~~~f~~-------~~~~e 296 (358)
T PF08298_consen 226 SGELNRANRGIMEFVEMLKAPIEFLHPLLTATQEGNIKVD--EDFGMIPFDELIIAHSNEEEYNKFKN-------NKNNE 296 (358)
T ss_pred ccHHHHhhchhHHHHHHhcCcHHHHHHHhcchhcCceecC--CcccccccceeEEecCCHHHHHHHhc-------cccch
Confidence 3778888999988889999999999999999999988543 2233357888999999985 22321 12236
Q ss_pred hhhhhhhhhhhhcCCCC
Q 006051 480 PLLSRFDIVLVLLDTKN 496 (663)
Q Consensus 480 aLl~RFdli~~l~d~~~ 496 (663)
||.+|+.. +.++...+
T Consensus 297 Af~DRi~~-I~VPY~L~ 312 (358)
T PF08298_consen 297 AFKDRIEV-IKVPYCLR 312 (358)
T ss_pred hhhhheEE-EeccccCC
Confidence 89999943 33433333
No 246
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.00035 Score=77.38 Aligned_cols=139 Identities=15% Similarity=0.252 Sum_probs=74.7
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC---------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG---------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~---------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
..||||.||+|+|||.|++++.+......+.--.. ..++.+.+. ..|..+ -..-.+.|+++|+
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~-----v~Cs~l~~~~~e~iQk~l~~vfse---~~~~~PSiIvLDd 502 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEI-----VSCSTLDGSSLEKIQKFLNNVFSE---ALWYAPSIIVLDD 502 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceEEEE-----EechhccchhHHHHHHHHHHHHHH---HHhhCCcEEEEcc
Confidence 47999999999999999999998765432211000 011111111 111111 1123578999999
Q ss_pred ccccChh---------hH-HhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh
Q 006051 418 FDSMREH---------DR-ATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 418 id~l~~~---------~~-~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
+|.+-.. .. ..|..++.+-.. +..+.+..+.+||+.+....+.+ .|..+. +|+.
T Consensus 503 ld~l~~~s~~e~~q~~~~~~rla~flnqvi~------~y~~~~~~ia~Iat~qe~qtl~~--------~L~s~~--~Fq~ 566 (952)
T KOG0735|consen 503 LDCLASASSNENGQDGVVSERLAAFLNQVIK------IYLKRNRKIAVIATGQELQTLNP--------LLVSPL--LFQI 566 (952)
T ss_pred hhhhhccCcccCCcchHHHHHHHHHHHHHHH------HHHccCcEEEEEEechhhhhcCh--------hhcCcc--ceEE
Confidence 9987431 11 122223322111 11223556789999987543333 222232 7988
Q ss_pred hhhhcCCCChhHHHHHHHHHhhh
Q 006051 488 VLVLLDTKNPEWDAVVSSHILAE 510 (663)
Q Consensus 488 i~~l~d~~~~~~d~~i~~~il~~ 510 (663)
++.+.. ++...+..|..++.+.
T Consensus 567 ~~~L~a-p~~~~R~~IL~~~~s~ 588 (952)
T KOG0735|consen 567 VIALPA-PAVTRRKEILTTIFSK 588 (952)
T ss_pred EEecCC-cchhHHHHHHHHHHHh
Confidence 888844 4444455555555543
No 247
>PRK09183 transposase/IS protein; Provisional
Probab=97.64 E-value=2.7e-05 Score=79.27 Aligned_cols=103 Identities=14% Similarity=0.144 Sum_probs=54.6
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccc
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDS 420 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~ 420 (663)
+....+++|+||||||||+|+.+++..+. ..+...........+..+ ...+........ ......+++|||++.
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a--~~~~~~~~~~~~-~~~~~dlLiiDdlg~ 175 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTA--QRQGRYKTTLQR-GVMAPRLLIIDEIGY 175 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHH--HHCCcHHHHHHH-HhcCCCEEEEccccc
Confidence 34457899999999999999999976532 222111100000000000 000100000000 023456999999998
Q ss_pred cCh--hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 421 MRE--HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 421 l~~--~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
.+. .....|+++++...- . .++|.|+|..
T Consensus 176 ~~~~~~~~~~lf~li~~r~~------------~-~s~iiTsn~~ 206 (259)
T PRK09183 176 LPFSQEEANLFFQVIAKRYE------------K-GSMILTSNLP 206 (259)
T ss_pred CCCChHHHHHHHHHHHHHHh------------c-CcEEEecCCC
Confidence 544 444568888875421 1 1467788875
No 248
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.61 E-value=0.00018 Score=75.01 Aligned_cols=125 Identities=19% Similarity=0.232 Sum_probs=71.4
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcCCc---eEEeCC--------CcccCCceEE-EeecC---chhHhh--hhhhh-
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNRS---VITTGL--------GSTSAGLTVT-AVKDG---GEWMLE--AGALV- 406 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~~~---~~~~~~--------~~~~~gl~~~-~~~~~---~~~~~~--~g~l~- 406 (663)
|-++-+||.||.|+||+.+|+.+++..--. .-.+|. ..+...+..- ...++ +.-..+ ...+.
T Consensus 23 rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~vdqiR~l~~~~~~ 102 (319)
T PRK06090 23 RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVEQIRQCNRLAQE 102 (319)
T ss_pred CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCCcCCHHHHHHHHHHHhh
Confidence 334679999999999999999999853210 001110 0111111110 00001 100001 01111
Q ss_pred ---hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh
Q 006051 407 ---LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS 483 (663)
Q Consensus 407 ---~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~ 483 (663)
.+..-|++||++++|+....++|+..+|+- |.++.+|..|+.. ..+.|.++|
T Consensus 103 ~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~------------~~lLpTI~S 157 (319)
T PRK06090 103 SSQLNGYRLFVIEPADAMNESASNALLKTLEEP-------------APNCLFLLVTHNQ------------KRLLPTIVS 157 (319)
T ss_pred CcccCCceEEEecchhhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECCh------------hhChHHHHh
Confidence 123459999999999999999999999973 3445555555433 267789999
Q ss_pred hhhhhhhhcCCC
Q 006051 484 RFDIVLVLLDTK 495 (663)
Q Consensus 484 RFdli~~l~d~~ 495 (663)
|+-.+ .+..+.
T Consensus 158 RCq~~-~~~~~~ 168 (319)
T PRK06090 158 RCQQW-VVTPPS 168 (319)
T ss_pred cceeE-eCCCCC
Confidence 99643 343333
No 249
>PRK06835 DNA replication protein DnaC; Validated
Probab=97.60 E-value=2e-05 Score=82.78 Aligned_cols=101 Identities=22% Similarity=0.222 Sum_probs=54.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeeccccccc--C
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSM--R 422 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l--~ 422 (663)
.+++|+|+||||||+|+.++++.+- ..+...........+... ..+.. .......-.+.+--+++|||++.. .
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~-~~~~~-~~~~~~~~~l~~~DLLIIDDlG~e~~t 261 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREI-RFNND-KELEEVYDLLINCDLLIIDDLGTEKIT 261 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHH-Hhccc-hhHHHHHHHhccCCEEEEeccCCCCCC
Confidence 5799999999999999999998642 222211000000000000 00000 000000111234469999999765 4
Q ss_pred hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 423 EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 423 ~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
+..+..|+++++...- .+..+|.|||..
T Consensus 262 ~~~~~~Lf~iin~R~~------------~~k~tIiTSNl~ 289 (329)
T PRK06835 262 EFSKSELFNLINKRLL------------RQKKMIISTNLS 289 (329)
T ss_pred HHHHHHHHHHHHHHHH------------CCCCEEEECCCC
Confidence 5566788888876532 122577788864
No 250
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.59 E-value=0.00019 Score=75.77 Aligned_cols=124 Identities=19% Similarity=0.239 Sum_probs=72.0
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcCC--c--eEEeCC--------CcccCCceEEEeecC----c--hhHhhhhhhh
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR--S--VITTGL--------GSTSAGLTVTAVKDG----G--EWMLEAGALV 406 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~~--~--~~~~~~--------~~~~~gl~~~~~~~~----~--~~~~~~g~l~ 406 (663)
|-++-+||.||+|+||+++|+++|+..-- + .-.+|. ..+...+..-.-.++ + +...-...+.
T Consensus 22 rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~~ 101 (334)
T PRK07993 22 RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKLY 101 (334)
T ss_pred CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHHh
Confidence 34467889999999999999999985421 1 001110 011111111000000 0 0000001111
Q ss_pred ----hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEee-CCCCCCCCCCccccccCCChhh
Q 006051 407 ----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT-NPKGHYDPNLSLSVNTTLSGPL 481 (663)
Q Consensus 407 ----~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat-N~~g~~d~~~~~~~~~~l~~aL 481 (663)
.+...|++||+.++|+....++|+..||+- |.++.+|..| |+. .+.+.+
T Consensus 102 ~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~~-------------~lLpTI 155 (334)
T PRK07993 102 EHARLGGAKVVWLPDAALLTDAAANALLKTLEEP-------------PENTWFFLACREPA-------------RLLATL 155 (334)
T ss_pred hccccCCceEEEEcchHhhCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh-------------hChHHH
Confidence 134569999999999999999999999973 3344555544 543 677899
Q ss_pred hhhhhhhhhhcCCC
Q 006051 482 LSRFDIVLVLLDTK 495 (663)
Q Consensus 482 l~RFdli~~l~d~~ 495 (663)
+||+-.+ .+..++
T Consensus 156 rSRCq~~-~~~~~~ 168 (334)
T PRK07993 156 RSRCRLH-YLAPPP 168 (334)
T ss_pred Hhccccc-cCCCCC
Confidence 9999754 453333
No 251
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.52 E-value=0.00018 Score=75.61 Aligned_cols=61 Identities=13% Similarity=0.161 Sum_probs=42.3
Q ss_pred ccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcE-EEEEeeCCCCCCCCCCccccccCCChhhhhhhh
Q 006051 408 ADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRT-IIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 408 a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~-~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd 486 (663)
+...|++||+++.|++..+++|+..||+.. ..+ .|+.|.|+. .+.+++.||+-
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~-------------~~~~~Ilvth~~~-------------~ll~ti~SRc~ 165 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPP-------------PQVVFLLVSHAAD-------------KVLPTIKSRCR 165 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCc-------------CCCEEEEEeCChH-------------hChHHHHHHhh
Confidence 345699999999999999999999999742 122 344444443 56678999985
Q ss_pred hhhhhcCCC
Q 006051 487 IVLVLLDTK 495 (663)
Q Consensus 487 li~~l~d~~ 495 (663)
.+ .+..+.
T Consensus 166 ~~-~~~~~~ 173 (325)
T PRK08699 166 KM-VLPAPS 173 (325)
T ss_pred hh-cCCCCC
Confidence 43 343333
No 252
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.51 E-value=0.0032 Score=64.33 Aligned_cols=60 Identities=22% Similarity=0.212 Sum_probs=40.7
Q ss_pred HHHhhccccccCchhHHHHHHH--HHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC
Q 006051 306 NAILRGICPQVFGLFTVKLAVA--LTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~ail--l~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
++|..--.|.-+|+..+++++- -.|....+ .-.-.++||+|++|.|||++++...+.-|.
T Consensus 26 eRI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~--------~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~ 87 (302)
T PF05621_consen 26 ERIAYIRADRWIGYPRAKEALDRLEELLEYPK--------RHRMPNLLIVGDSNNGKTMIIERFRRLHPP 87 (302)
T ss_pred HHHHHHhcCCeecCHHHHHHHHHHHHHHhCCc--------ccCCCceEEecCCCCcHHHHHHHHHHHCCC
Confidence 3444445777789888877663 33433211 111268999999999999999999876543
No 253
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=97.48 E-value=0.00025 Score=74.80 Aligned_cols=66 Identities=9% Similarity=0.100 Sum_probs=46.3
Q ss_pred cCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhh
Q 006051 409 DGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIV 488 (663)
Q Consensus 409 ~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli 488 (663)
..-|++||+.++|+....++|+..||+- +.++.+|..|+.. ..+.++++||+- .
T Consensus 132 ~~kV~iI~~ae~m~~~AaNaLLKtLEEP-------------p~~t~fiL~t~~~------------~~LLpTI~SRcq-~ 185 (342)
T PRK06964 132 GARVVVLYPAEALNVAAANALLKTLEEP-------------PPGTVFLLVSARI------------DRLLPTILSRCR-Q 185 (342)
T ss_pred CceEEEEechhhcCHHHHHHHHHHhcCC-------------CcCcEEEEEECCh------------hhCcHHHHhcCE-E
Confidence 3459999999999999999999999962 3444555555443 267789999994 4
Q ss_pred hhhcCCCChhHH
Q 006051 489 LVLLDTKNPEWD 500 (663)
Q Consensus 489 ~~l~d~~~~~~d 500 (663)
+.+..++.++..
T Consensus 186 i~~~~~~~~~~~ 197 (342)
T PRK06964 186 FPMTVPAPEAAA 197 (342)
T ss_pred EEecCCCHHHHH
Confidence 555444444433
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.44 E-value=4.5e-05 Score=76.61 Aligned_cols=100 Identities=21% Similarity=0.277 Sum_probs=55.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecCchhHhhhhhh-hhccCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l-~~a~~gvl~iDEid~l~~ 423 (663)
.+++|+|+||||||+|+.+++..+. .+++..........+..+.. .. .... ...+ .+..--+++|||++....
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~-~~-~~~~-~~~l~~l~~~dlLvIDDig~~~~ 176 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFS-NS-ETSE-EQLLNDLSNVDLLVIDEIGVQTE 176 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHh-hc-cccH-HHHHHHhccCCEEEEeCCCCCCC
Confidence 4799999999999999999998653 22222110000000000000 00 0000 0001 133556999999998764
Q ss_pred h--hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 424 H--DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 424 ~--~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
. ....|+++++.+. ..+..+|.+||..
T Consensus 177 s~~~~~~l~~Ii~~Ry------------~~~~~tiitSNl~ 205 (244)
T PRK07952 177 SRYEKVIINQIVDRRS------------SSKRPTGMLTNSN 205 (244)
T ss_pred CHHHHHHHHHHHHHHH------------hCCCCEEEeCCCC
Confidence 4 3456888887643 2233677889975
No 255
>PF13654 AAA_32: AAA domain; PDB: 3K1J_B.
Probab=97.39 E-value=0.00034 Score=77.61 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=96.8
Q ss_pred HhhhhhhhhccCCeeecccccccC-hhhHHhHHHHHHhceeeeeccC---c-------eeecCCcEEEEEeeCCCCCCCC
Q 006051 399 MLEAGALVLADGGLCCIDEFDSMR-EHDRATIHEAMEQQTISVAKAG---L-------VTTLSTRTIIFGATNPKGHYDP 467 (663)
Q Consensus 399 ~~~~g~l~~a~~gvl~iDEid~l~-~~~~~~L~~~me~~~i~i~k~g---~-------~~~~~~~~~iiaatN~~g~~d~ 467 (663)
.+++|++..|+||+++||--+-+. +.....|.+++..|.+.+...+ . ....|.++-||...++.-
T Consensus 322 ~I~~GaLhkANGGyLIL~a~~LL~~p~~W~~LKr~L~~~~i~ie~~~~~~~~~~~~l~PepIpl~vKVILiG~~~~---- 397 (509)
T PF13654_consen 322 LIKPGALHKANGGYLILDAEDLLANPYAWERLKRALRTGEIEIESPEEYGLSSTVSLEPEPIPLDVKVILIGDREL---- 397 (509)
T ss_dssp GEE--HHHHTTTSEEEETTGGGS-HHH-HHHHHHHHHHSEE--B-S---TTSGGGG-B-S-EE---EEEEEE-TTH----
T ss_pred eEcCceEEecCCeEEEEEHHHhhhChHHHHHHHHHHHcCceeeccccccccCCCCCCCCCCcceEEEEEEEcCHHH----
Confidence 357999999999999999988876 5678899999999999887552 1 112345555655556530
Q ss_pred CCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH----ccCC
Q 006051 468 NLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVK----GYFK 543 (663)
Q Consensus 468 ~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r----~~~~ 543 (663)
+..-....+.+.+-|.+...+.+ .-..+.+.++.|+.+++ +.--
T Consensus 398 ---y~~L~~~D~dF~~lFkv~aef~~-----------------------------~~~~~~e~~~~~~~~i~~~~~~~~L 445 (509)
T PF13654_consen 398 ---YYLLYEYDPDFYKLFKVKAEFDS-----------------------------EMPRTEENIRQYARFIASICQKEGL 445 (509)
T ss_dssp ---HHHS-HHHHHHHHHHSEEEE--S-----------------------------EEE--HHHHHHHHHHHHHHHHHHSS
T ss_pred ---HHHHHHhCHHHHhCCCEEEEccc-----------------------------cCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 00000111223333332222211 11234555555555544 3334
Q ss_pred CccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHH
Q 006051 544 PILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 544 p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l 607 (663)
|.++.+|...|..|...+ . .+........|..+++-|-..|+...++.|+.+||..|+.-
T Consensus 446 ~~~~~~Av~~li~~~~R~--~--q~kLsl~~~~l~~ll~EA~~~A~~~~~~~I~~~~V~~Ai~~ 505 (509)
T PF13654_consen 446 PPFDRSAVARLIEYSARL--D--QDKLSLRFSWLADLLREANYWARKEGAKVITAEHVEQAIEE 505 (509)
T ss_dssp --BBHHHHHHHHHHHHHC--C---SEEE--HHHHHHHHHHHHHHHHHCT-SSB-HHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH--h--CCEeCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHc
Confidence 779999999998886543 2 22355667789999999999999999999999999999863
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.39 E-value=5.8e-05 Score=76.54 Aligned_cols=123 Identities=19% Similarity=0.165 Sum_probs=66.4
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEE
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~ 391 (663)
++-+.....++.+..+....... ...-+++|+|+||||||.||-+++..+-+ +++..... .+. ..
T Consensus 80 d~~~~~~~~~~~l~~~~~~~~~~-------~~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~----el~-~~ 147 (254)
T COG1484 80 DFEFQPGIDKKALEDLASLVEFF-------ERGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAP----DLL-SK 147 (254)
T ss_pred cccCCcchhHHHHHHHHHHHHHh-------ccCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHH----HHH-HH
Confidence 34445555555555554432211 13368999999999999999999975322 22111100 000 00
Q ss_pred eecC-chhHhhhhhhh-hccCCeeecccccccChh--hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 392 VKDG-GEWMLEAGALV-LADGGLCCIDEFDSMREH--DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 392 ~~~~-~~~~~~~g~l~-~a~~gvl~iDEid~l~~~--~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
++.. .....+.-..- +..--+++|||+...+.+ .++.+++.+.+..- .+.. +.++|..
T Consensus 148 Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~~~~~~~~~~~q~I~~r~~------------~~~~-~~tsN~~ 209 (254)
T COG1484 148 LKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEPFSQEEADLLFQLISRRYE------------SRSL-IITSNLS 209 (254)
T ss_pred HHHHHhcCchHHHHHHHhhcCCEEEEecccCccCCHHHHHHHHHHHHHHHh------------hccc-eeecCCC
Confidence 0100 00000111111 345569999999996544 56778888776542 2223 7888975
No 257
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.38 E-value=0.00023 Score=69.29 Aligned_cols=97 Identities=21% Similarity=0.344 Sum_probs=68.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDR 426 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~ 426 (663)
+.-++|+|+.|+|||++.+.+... ++...... .+.++. ...+....++.+||++.+.....
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~----~~~d~~~~----------~~~kd~-----~~~l~~~~iveldEl~~~~k~~~ 112 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPE----YFSDSIND----------FDDKDF-----LEQLQGKWIVELDELDGLSKKDV 112 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHH----hccCcccc----------CCCcHH-----HHHHHHhHheeHHHHhhcchhhH
Confidence 467888999999999999988433 33221110 011111 12234456899999999998899
Q ss_pred HhHHHHHHhceeeeec--cCceeecCCcEEEEEeeCCC
Q 006051 427 ATIHEAMEQQTISVAK--AGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 427 ~~L~~~me~~~i~i~k--~g~~~~~~~~~~iiaatN~~ 462 (663)
+.|-..+......+.+ ......++-.++++||||..
T Consensus 113 ~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~ 150 (198)
T PF05272_consen 113 EALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDD 150 (198)
T ss_pred HHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCc
Confidence 9999999888777653 33456778899999999986
No 258
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.36 E-value=0.0011 Score=66.84 Aligned_cols=141 Identities=20% Similarity=0.204 Sum_probs=87.4
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccC
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA 385 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~ 385 (663)
+.|-..+.-.++||..+|.-++-++-+-.... ..+.+.-+=|.|.|||||+.+++.+|+-.-+. |..+.-.
T Consensus 74 ~~Le~dL~~~lfGQHla~~~Vv~alk~~~~n~-----~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~----Gl~S~~V 144 (344)
T KOG2170|consen 74 DGLEKDLARALFGQHLAKQLVVNALKSHWANP-----NPRKPLVLSFHGWTGTGKNYVAEIIAENLYRG----GLRSPFV 144 (344)
T ss_pred hHHHHHHHHHhhchHHHHHHHHHHHHHHhcCC-----CCCCCeEEEecCCCCCchhHHHHHHHHHHHhc----cccchhH
Confidence 45666677788999999999988887632221 13445677789999999999999999754332 2221111
Q ss_pred CceE--------EEeecC----chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcE
Q 006051 386 GLTV--------TAVKDG----GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRT 453 (663)
Q Consensus 386 gl~~--------~~~~~~----~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~ 453 (663)
.... ..+.+- ..| -.|.+......+.++||.|+|++...+.|...++.-. ...|.. ..+.
T Consensus 145 ~~fvat~hFP~~~~ie~Yk~eL~~~--v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp---~v~gv~---frka 216 (344)
T KOG2170|consen 145 HHFVATLHFPHASKIEDYKEELKNR--VRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYP---QVSGVD---FRKA 216 (344)
T ss_pred HHhhhhccCCChHHHHHHHHHHHHH--HHHHHHhcCCceEEechhhhcCHhHHHHHhhhhcccc---cccccc---ccce
Confidence 1100 000000 111 1344455678899999999999999999999988411 111111 2244
Q ss_pred EEEEeeCCCC
Q 006051 454 IIFGATNPKG 463 (663)
Q Consensus 454 ~iiaatN~~g 463 (663)
.+|.-+|..|
T Consensus 217 IFIfLSN~gg 226 (344)
T KOG2170|consen 217 IFIFLSNAGG 226 (344)
T ss_pred EEEEEcCCcc
Confidence 6677777653
No 259
>PRK06921 hypothetical protein; Provisional
Probab=97.33 E-value=6.8e-05 Score=76.62 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=22.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.+++|+|+||||||+|+.++++.+.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~ 142 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELM 142 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHh
Confidence 5799999999999999999998543
No 260
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.00043 Score=66.89 Aligned_cols=89 Identities=18% Similarity=0.234 Sum_probs=49.8
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCc--------eEEeCCC-cccCCceEEEeecCchh--H-----hhhhhhh---h
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRS--------VITTGLG-STSAGLTVTAVKDGGEW--M-----LEAGALV---L 407 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~--------~~~~~~~-~~~~gl~~~~~~~~~~~--~-----~~~g~l~---~ 407 (663)
..|.|++||||+|||+++|-+|+++... +...... ..++++...-.-+.|.. + ...|.+. -
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIrs 216 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIRS 216 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHHh
Confidence 4899999999999999999999976443 1111111 11111111000000110 0 1112221 1
Q ss_pred ccCCeeecccccccChhhHHhHHHHHHhce
Q 006051 408 ADGGLCCIDEFDSMREHDRATIHEAMEQQT 437 (663)
Q Consensus 408 a~~gvl~iDEid~l~~~~~~~L~~~me~~~ 437 (663)
-.+-|+++|||..... -.+++++++.|.
T Consensus 217 m~PEViIvDEIGt~~d--~~A~~ta~~~GV 244 (308)
T COG3854 217 MSPEVIIVDEIGTEED--ALAILTALHAGV 244 (308)
T ss_pred cCCcEEEEeccccHHH--HHHHHHHHhcCc
Confidence 2467999999998654 457888887664
No 261
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=97.26 E-value=0.00061 Score=69.81 Aligned_cols=115 Identities=15% Similarity=0.106 Sum_probs=67.8
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEEeCC----CcccCCceEEEee-cC-----chhHhh--hhhhh----hccC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL----GSTSAGLTVTAVK-DG-----GEWMLE--AGALV----LADG 410 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~----~~~~~gl~~~~~~-~~-----~~~~~~--~g~l~----~a~~ 410 (663)
.+-.||.||+|+||+.+|.++++..-..-....+ ......+. .+. ++ +.-..+ ...+. .+..
T Consensus 19 ~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~--~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~~ 96 (290)
T PRK05917 19 PSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIH--EFSPQGKGRLHSIETPRAIKKQIWIHPYESPY 96 (290)
T ss_pred CeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEE--EEecCCCCCcCcHHHHHHHHHHHhhCccCCCc
Confidence 4678899999999999999999854211000000 11111111 111 00 000000 01111 1344
Q ss_pred CeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE-EEeeCCCCCCCCCCccccccCCChhhhhhhhhhh
Q 006051 411 GLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII-FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVL 489 (663)
Q Consensus 411 gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i-iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~ 489 (663)
-|++||+.++|..+.+++|+..||+- |.++.+ +.|.|+. .+.|+++||+-.+-
T Consensus 97 kv~ii~~ad~mt~~AaNaLLK~LEEP-------------p~~~~fiL~~~~~~-------------~ll~TI~SRcq~~~ 150 (290)
T PRK05917 97 KIYIIHEADRMTLDAISAFLKVLEDP-------------PQHGVIILTSAKPQ-------------RLPPTIRSRSLSIH 150 (290)
T ss_pred eEEEEechhhcCHHHHHHHHHHhhcC-------------CCCeEEEEEeCChh-------------hCcHHHHhcceEEE
Confidence 69999999999999999999999973 334444 4455553 67789999986544
No 262
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.21 E-value=0.0017 Score=59.60 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.9
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...+.+.|+||+|||+++..++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3679999999999999999999654
No 263
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.20 E-value=0.00037 Score=62.91 Aligned_cols=25 Identities=32% Similarity=0.598 Sum_probs=19.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...++++|+||+|||.+++.+++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999864
No 264
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.20 E-value=0.00043 Score=65.57 Aligned_cols=23 Identities=35% Similarity=0.674 Sum_probs=19.8
Q ss_pred ccccccCCCchHHHHHHHHHHhc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
|++|+|+||+|||++++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 68999999999999999888765
No 265
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=97.16 E-value=0.0053 Score=66.37 Aligned_cols=184 Identities=17% Similarity=0.160 Sum_probs=109.0
Q ss_pred CCeeeccccccc----Ch----hhHHhHHHHHHhceeeeeccCce-ee-cCCcEEEEEeeCCC---CCCCCCCccccccC
Q 006051 410 GGLCCIDEFDSM----RE----HDRATIHEAMEQQTISVAKAGLV-TT-LSTRTIIFGATNPK---GHYDPNLSLSVNTT 476 (663)
Q Consensus 410 ~gvl~iDEid~l----~~----~~~~~L~~~me~~~i~i~k~g~~-~~-~~~~~~iiaatN~~---g~~d~~~~~~~~~~ 476 (663)
+..++.||+..+ .. .....++++-+.+.+++.+.+.. .. -++.+++++++.|. ..+-. ......
T Consensus 150 ~~l~~~dE~~~~~~~~~~~~~~~~~~~ll~~~dg~~~~~~R~~~~~~~i~~~~lsi~~~~QP~~l~~~~~~---~~~~~~ 226 (378)
T PF13148_consen 150 GLLLFSDEGGGLLNSMGRYGGGSDRDLLLKAWDGEPYSIDRKSRGSIYIENPRLSILGGIQPDVLKREILS---AEDPEF 226 (378)
T ss_pred eEEEEchhHHHHHHHhhcccCCccHHHHHHHhCCCCeeeeeccCCcccCCCceEEEEeccChHHHHHHHhh---hhcccc
Confidence 457889999875 22 45667888888888877655432 22 35788999998884 11100 000011
Q ss_pred CChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHH-------HHHHHHHHH-----ccCCC
Q 006051 477 LSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAM-------LRRYIYFVK-----GYFKP 544 (663)
Q Consensus 477 l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~-------l~~~i~~~r-----~~~~p 544 (663)
...-|+.||- +.+.+....... . .......+.+. +........ ....-
T Consensus 227 ~~~Gll~RfL--~~~p~~~~~~~~----------~--------~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l 286 (378)
T PF13148_consen 227 RGDGLLARFL--FVIPDSRKGRRF----------E--------FPVPEPIDDEALEAYHERIKELLDWPPEDGSDEPIVL 286 (378)
T ss_pred cCCChHhhee--eeccCccccccc----------c--------cCCCCcccHHHHHHHHHHHHHHHhhhhcccCCCCeEE
Confidence 3345888985 333221111000 0 00001111222 222222221 01123
Q ss_pred ccCHHHHHHHHHHHHHHHhcccC--CC---ccccHhHHHHHHHHHHHHHhcc-----CCCccChhhHHHHHHHHHhhhhh
Q 006051 545 ILTKEAEKVISSYYQLQRRSATQ--NA---ARTTVRMLESLIRLAQAHARLM-----FRNEVTRLDAITAILCIESSMTT 614 (663)
Q Consensus 545 ~ls~ea~~~l~~~y~~~r~~~~~--~~---~~~t~R~Le~lirla~a~A~l~-----~~~~V~~~Dv~~Ai~l~~~s~~~ 614 (663)
.++++|..++.+||......... +. ...--|.-+.+.|+|-..+-++ ....|+.+++..|+.+++.++.+
T Consensus 287 ~ls~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~~~~RlA~ilh~~~~~~~~~~~~I~~~~~~~Ai~l~~~~~~~ 366 (378)
T PF13148_consen 287 ELSDEAKELFREWYNELENELRQPGGDLAMRSFASKAAEQALRLALILHLFESGGSPPSTEISAETMERAIRLVEYFLEH 366 (378)
T ss_pred ecCHHHHHHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCEECHHHHHHHHHHHHHHHHH
Confidence 68999999999999877765421 11 1233467788999999999888 88999999999999999988877
Q ss_pred hh
Q 006051 615 SA 616 (663)
Q Consensus 615 ~~ 616 (663)
..
T Consensus 367 ~~ 368 (378)
T PF13148_consen 367 AR 368 (378)
T ss_pred HH
Confidence 53
No 266
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.14 E-value=0.00036 Score=77.59 Aligned_cols=79 Identities=29% Similarity=0.353 Sum_probs=53.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhh----hh---ccCCeeecccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL----VL---ADGGLCCIDEFDS 420 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l----~~---a~~gvl~iDEid~ 420 (663)
.-+||+||||.|||+||+.+|+.++.+++..+.+-- -++..++. . + .+++ ++ ..+-.++|||||-
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDe---Rt~~~v~~---k-I-~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDE---RTAPMVKE---K-I-ENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEeccccc---ccHHHHHH---H-H-HHHHhhccccccCCCcceEEEecccC
Confidence 356789999999999999999999999987643211 11111111 0 0 1111 12 2345788999999
Q ss_pred cChhhHHhHHHHHH
Q 006051 421 MREHDRATIHEAME 434 (663)
Q Consensus 421 l~~~~~~~L~~~me 434 (663)
.+....+.|+..++
T Consensus 399 a~~~~Vdvilslv~ 412 (877)
T KOG1969|consen 399 APRAAVDVILSLVK 412 (877)
T ss_pred CcHHHHHHHHHHHH
Confidence 99888888888776
No 267
>PRK08939 primosomal protein DnaI; Reviewed
Probab=97.14 E-value=0.00026 Score=73.74 Aligned_cols=24 Identities=42% Similarity=0.429 Sum_probs=22.3
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+++|+||||||||.|+.++++.+
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l 180 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANEL 180 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999865
No 268
>PF13335 Mg_chelatase_2: Magnesium chelatase, subunit ChlI
Probab=97.07 E-value=0.0024 Score=54.28 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=58.0
Q ss_pred CCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHH
Q 006051 523 TDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAI 602 (663)
Q Consensus 523 ~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~ 602 (663)
+..++...|++|+ .+++++..+|...+.. ..+|.|....++|+|+++|+|..++.|+.+|+.
T Consensus 29 Na~l~~~~l~~~~---------~l~~~~~~~l~~~~~~---------~~lS~R~~~rilrvARTIADL~~~~~I~~~hi~ 90 (96)
T PF13335_consen 29 NAQLPGEELRKYC---------PLSSEAKKLLEQAAEK---------LNLSARGYHRILRVARTIADLEGSERITREHIA 90 (96)
T ss_pred cccCCHHHHHhHc---------CCCHHHHHHHHHHHHH---------cCcCHHHHHHHHHHHHHHHhHcCCCCCCHHHHH
Confidence 4568888998885 5788999999988753 346899999999999999999999999999999
Q ss_pred HHHHH
Q 006051 603 TAILC 607 (663)
Q Consensus 603 ~Ai~l 607 (663)
+|+.+
T Consensus 91 EAl~y 95 (96)
T PF13335_consen 91 EALSY 95 (96)
T ss_pred HHHhC
Confidence 99864
No 269
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.01 E-value=0.00064 Score=60.20 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=45.8
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHh
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+.|-.++.-.++||..+++.++-++.+-.... ..+.+.-+.|.|+||||||.+++.||+.
T Consensus 17 ~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~~-----~p~KpLVlSfHG~tGtGKn~v~~liA~~ 76 (127)
T PF06309_consen 17 TGLEKDLQRNLFGQHLAVEVVVNAIKGHLANP-----NPRKPLVLSFHGWTGTGKNFVSRLIAEH 76 (127)
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHcCC-----CCCCCEEEEeecCCCCcHHHHHHHHHHH
Confidence 45666777789999999999888886632221 2334466779999999999999999985
No 270
>PRK08118 topology modulation protein; Reviewed
Probab=96.87 E-value=0.0047 Score=58.54 Aligned_cols=30 Identities=27% Similarity=0.418 Sum_probs=26.3
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.|+++|+||+|||++|+.+++..+.+++..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~l 32 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHL 32 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceec
Confidence 489999999999999999999888776653
No 271
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=96.86 E-value=0.014 Score=65.17 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=90.4
Q ss_pred cCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhh-----h
Q 006051 409 DGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLL-----S 483 (663)
Q Consensus 409 ~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl-----~ 483 (663)
...|++|||+|.|=...|..|..+.+=-+ .-+++..|||-+|.. .++..++ +
T Consensus 508 ~~~VvLiDElD~Lvtr~QdVlYn~fdWpt----------~~~sKLvvi~IaNTm-------------dlPEr~l~nrvsS 564 (767)
T KOG1514|consen 508 STTVVLIDELDILVTRSQDVLYNIFDWPT----------LKNSKLVVIAIANTM-------------DLPERLLMNRVSS 564 (767)
T ss_pred CCEEEEeccHHHHhcccHHHHHHHhcCCc----------CCCCceEEEEecccc-------------cCHHHHhccchhh
Confidence 35799999999997777787877765211 124677999999985 2222222 2
Q ss_pred hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHh
Q 006051 484 RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRR 563 (663)
Q Consensus 484 RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~ 563 (663)
|.++.= ....+++...|+..+.-.-..+ -.+..+|.++..+...
T Consensus 565 Rlg~tR-------------------------------i~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVA---- 608 (767)
T KOG1514|consen 565 RLGLTR-------------------------------ICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVA---- 608 (767)
T ss_pred hcccee-------------------------------eecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHH----
Confidence 332221 1234566667777764433322 2467778777776432
Q ss_pred cccCCCccccHhHHHHHHHHHHHHHhccCC-------CccChhhHHHHHHHHHhhhhh
Q 006051 564 SATQNAARTTVRMLESLIRLAQAHARLMFR-------NEVTRLDAITAILCIESSMTT 614 (663)
Q Consensus 564 ~~~~~~~~~t~R~Le~lirla~a~A~l~~~-------~~V~~~Dv~~Ai~l~~~s~~~ 614 (663)
...++.|....+++.|.-.|.-+.. ..|+..|+..|+.-|-.+...
T Consensus 609 -----avSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~~~ 661 (767)
T KOG1514|consen 609 -----AVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASPYI 661 (767)
T ss_pred -----hccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhhHH
Confidence 2345678888888888777765555 778999999999776555433
No 272
>KOG2545 consensus Conserved membrane protein [Function unknown]
Probab=96.82 E-value=0.065 Score=56.19 Aligned_cols=244 Identities=17% Similarity=0.113 Sum_probs=146.5
Q ss_pred hhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCc--hHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCc
Q 006051 319 LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGT--GKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGG 396 (663)
Q Consensus 319 ~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGt--GKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~ 396 (663)
...+-+-+++.|.+.+-... ++.. -|...+=|+|=|-- --|+|-+.+..+.|++++.--.-.........-.++.+
T Consensus 283 d~iAAeyLllhLlStV~~R~-d~l~-iGkftlNL~ncpkes~f~tqLy~iL~~Llpas~~~pmtie~lNta~f~PkkDye 360 (543)
T KOG2545|consen 283 DNIAAEYLLLHLLSTVYHRT-DGLV-IGKFTLNLTNCPKESIFVTQLYSILRPLLPASVIQPMTIEELNTAPFYPKKDYE 360 (543)
T ss_pred chHHHHHHHHHHHHHhhccc-cceE-eeeeEEeecCCCchhHHHHHHHHHHHHhchhhheeeeeHHhhcccCcccccccc
Confidence 44555667777776543322 1211 12244445554433 45677777777888776542111110001111123335
Q ss_pred hhHhhhhhhhhccCCeeecccccccC-------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCC
Q 006051 397 EWMLEAGALVLADGGLCCIDEFDSMR-------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (663)
Q Consensus 397 ~~~~~~g~l~~a~~gvl~iDEid~l~-------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~ 469 (663)
...+.+|.+-+|.|--++|||-..-+ -.....|-..+++|.+...-.-....+++++.++..+--.
T Consensus 361 tNrLvsgvLQlapgThLVLDETeLqqGtLn~vGvhnvq~LsnLI~~Qkl~ydfqyyqme~~~nv~vlIlSeGr------- 433 (543)
T KOG2545|consen 361 TNRLVSGVLQLAPGTHLVLDETELQQGTLNDVGVHNVQFLSNLISQQKLTYDFQYYQMEVHSNVRVLILSEGR------- 433 (543)
T ss_pred ccccccceeecCCCceEEeehhhcCCCccCccchhhHHHHHHHhhccccceecceEEEEeccCceEEEeeCCc-------
Confidence 55677899999999999999965432 2344567778888887654444445556666666655321
Q ss_pred ccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHH
Q 006051 470 SLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKE 549 (663)
Q Consensus 470 ~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~e 549 (663)
.+-|| |+.+.+....- +. + ..-.+=.....+.|+..+| .....++++
T Consensus 434 ------silPA-----Dl~i~lqp~~v-~~-----------l---------e~~tps~l~q~rcyltt~r-~l~~nIsee 480 (543)
T KOG2545|consen 434 ------SILPA-----DLGIRLQPDSV-DT-----------L---------EFPTPSDLLQFRCYLTTMR-NLRANISEE 480 (543)
T ss_pred ------ccCcc-----cccccCCCCCC-Cc-----------c---------ccCChhHHHHHHHHHHHHH-hhccCccHH
Confidence 11111 22222211000 00 0 0001112446777888787 457789999
Q ss_pred HHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 550 AEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 550 a~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
..+++..-|+.+|+... ..+...|-.++-+|+..++-.++.+++.+|-..|.++.
T Consensus 481 ~t~~iq~dfV~mRq~n~----~snaddLs~lLv~sRlls~S~G~ttlsre~wq~a~ele 535 (543)
T KOG2545|consen 481 MTDYIQSDFVSMRQYNK----ESNADDLSLLLVCSRLLSKSFGRTTLSREDWQAARELE 535 (543)
T ss_pred HHHHHHHHHHHHHhhCc----ccchhHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHH
Confidence 99999999999998643 33467788889999999999999999999999988774
No 273
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.69 E-value=0.0057 Score=56.97 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=20.3
Q ss_pred ccccccCCCchHHHHHHHHHHhc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+++++|+||+|||+++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
No 274
>PHA02774 E1; Provisional
Probab=96.66 E-value=0.0048 Score=68.34 Aligned_cols=97 Identities=21% Similarity=0.274 Sum_probs=56.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccC-hhhH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR-EHDR 426 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~-~~~~ 426 (663)
.+++|+||||||||.++-++.+.+...++.. +.....+.+. .+++.-++++||+..-- .-..
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~f-------------vN~~s~FwLq----pl~d~ki~vlDD~t~~~w~y~d 497 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISF-------------VNSKSHFWLQ----PLADAKIALLDDATHPCWDYID 497 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEE-------------EECccccccc----hhccCCEEEEecCcchHHHHHH
Confidence 4799999999999999999999875333221 0001122111 23456699999993321 1223
Q ss_pred HhHHHHHHhceeeeeccC-ceeecCCcEEEEEeeCCC
Q 006051 427 ATIHEAMEQQTISVAKAG-LVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 427 ~~L~~~me~~~i~i~k~g-~~~~~~~~~~iiaatN~~ 462 (663)
..|..+++-..+++.+.. ....+. ...+|.|||..
T Consensus 498 ~~Lrn~LdG~~v~lD~Khk~~~q~k-~pPlIITSN~d 533 (613)
T PHA02774 498 TYLRNALDGNPVSIDCKHKAPVQIK-CPPLLITSNID 533 (613)
T ss_pred HHHHHHcCCCcceeeecccCccccc-CCCEEEecCCC
Confidence 357777777767664222 111111 12577889965
No 275
>PHA02624 large T antigen; Provisional
Probab=96.66 E-value=0.0051 Score=68.41 Aligned_cols=115 Identities=13% Similarity=0.176 Sum_probs=70.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccCh----
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE---- 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~---- 423 (663)
.-+||+||||||||+++.++.+.++..+..... .. +...+.+ | .+++.-+++||++..-.-
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNs--Pt---------~ks~FwL--~--pl~D~~~~l~dD~t~~~~~~~~ 496 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNC--PP---------DKLNFEL--G--CAIDQFMVVFEDVKGQPADNKD 496 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeC--Cc---------chhHHHh--h--hhhhceEEEeeecccccccccc
Confidence 579999999999999999999998544433211 10 0011111 1 345777888888853211
Q ss_pred -------hhHHhHHHHHHhc-eeeeec---cCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhc
Q 006051 424 -------HDRATIHEAMEQQ-TISVAK---AGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLL 492 (663)
Q Consensus 424 -------~~~~~L~~~me~~-~i~i~k---~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~ 492 (663)
+...-|+.+++-. .|++.+ +-....+| -.|.|+|.. .+|..+.-||-.++.+.
T Consensus 497 Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~P---PlliT~Ney-------------~iP~T~~~Rf~~~~~F~ 560 (647)
T PHA02624 497 LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFP---PGIVTMNEY-------------LIPQTVKARFAKVLDFK 560 (647)
T ss_pred CCcccccchhhHHHhhcCCCCccccchhccCchhccCC---CeEEeecCc-------------ccchhHHHHHHHhcccc
Confidence 1124567777654 454432 22223334 356788975 57778999999888764
Q ss_pred C
Q 006051 493 D 493 (663)
Q Consensus 493 d 493 (663)
.
T Consensus 561 ~ 561 (647)
T PHA02624 561 P 561 (647)
T ss_pred c
Confidence 4
No 276
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=96.64 E-value=0.001 Score=70.83 Aligned_cols=28 Identities=21% Similarity=0.223 Sum_probs=24.6
Q ss_pred cccccccccCCCchHHHHHHHHHHhcCC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.+.++.|+|++|+|||+|+-.....+|.
T Consensus 61 ~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 61 PPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred CCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 4578999999999999999999887764
No 277
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.48 E-value=0.0022 Score=76.10 Aligned_cols=115 Identities=18% Similarity=0.210 Sum_probs=60.6
Q ss_pred ccccccccCCCchHHHHHHHHHH-hcCCceEEeCCC-cccCCceEEEeecCchhHhhhhhhhh-----ccCCeeeccccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK-LSNRSVITTGLG-STSAGLTVTAVKDGGEWMLEAGALVL-----ADGGLCCIDEFD 419 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~-~~~~~~~~~~~~-~~~~gl~~~~~~~~~~~~~~~g~l~~-----a~~gvl~iDEid 419 (663)
...+.++||||+|||+|+--.-+ ..-..+...+.. ++...-..+.+....+.+...|.+.+ -..+|+|.|||+
T Consensus 1494 ~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeIn 1573 (3164)
T COG5245 1494 LRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEIN 1573 (3164)
T ss_pred cceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEeeccC
Confidence 45799999999999997543322 111112211111 01111000111111112222233222 146899999999
Q ss_pred c------cChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 420 S------MREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 420 ~------l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
. .+++..-.|...||.|.+.-+-+....++ .+..+.+|+||.
T Consensus 1574 Lp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI-~~i~l~Gacnp~ 1621 (3164)
T COG5245 1574 LPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTI-CGIILYGACNPG 1621 (3164)
T ss_pred CccccccCCCceEEeeHHHHHhcccccchhhhHhhh-cceEEEccCCCC
Confidence 3 24455556788898876644434333333 467889999996
No 278
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.43 E-value=0.0018 Score=57.59 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=23.9
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
|++.|+||+|||++++.+++..+-.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~ 29 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVIS 29 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEE
Confidence 6899999999999999999987655544
No 279
>PF13173 AAA_14: AAA domain
Probab=96.41 E-value=0.0046 Score=55.76 Aligned_cols=81 Identities=19% Similarity=0.186 Sum_probs=44.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcC--CceEEeCCCcccCCceEEEeecCchhHhhhhhhhh--ccCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN--RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVL--ADGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~--~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~--a~~gvl~iDEid~l~~ 423 (663)
..++|.||.|+|||++++.+++-.. ..++......... ............... ....++||||+..++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~ 75 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD-------RRLADPDLLEYFLELIKPGKKYIFIDEIQYLPD 75 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH-------HHHhhhhhHHHHHHhhccCCcEEEEehhhhhcc
Confidence 4589999999999999998886543 3332221111000 000000000001111 2467999999999974
Q ss_pred hhHHhHHHHHHhc
Q 006051 424 HDRATIHEAMEQQ 436 (663)
Q Consensus 424 ~~~~~L~~~me~~ 436 (663)
....+....+.+
T Consensus 76 -~~~~lk~l~d~~ 87 (128)
T PF13173_consen 76 -WEDALKFLVDNG 87 (128)
T ss_pred -HHHHHHHHHHhc
Confidence 555666666643
No 280
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.38 E-value=0.0023 Score=57.74 Aligned_cols=35 Identities=31% Similarity=0.490 Sum_probs=29.6
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
|-..|||+.|-||||||+++..+|...+-..+..+
T Consensus 5 r~~PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 5 RERPNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred hcCCCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 34479999999999999999999998887766544
No 281
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=96.31 E-value=0.0077 Score=62.45 Aligned_cols=112 Identities=13% Similarity=0.140 Sum_probs=65.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceE-EeCCCcccCCceEEEee--cC--c--hhHhhhhhhh-----hccCCeeec
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI-TTGLGSTSAGLTVTAVK--DG--G--EWMLEAGALV-----LADGGLCCI 415 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~-~~~~~~~~~gl~~~~~~--~~--~--~~~~~~g~l~-----~a~~gvl~i 415 (663)
+-.||+|+.|+||+++++.+++..-..-- ....+. ......... +. + +...-...+. .++.-|++|
T Consensus 19 haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~--~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII 96 (299)
T PRK07132 19 HSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQE--LPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILII 96 (299)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCC--CCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEEE
Confidence 45679999999999999999986511000 000000 000001111 00 0 1100011111 125569999
Q ss_pred ccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEee-CCCCCCCCCCccccccCCChhhhhhhhh
Q 006051 416 DEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT-NPKGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 416 DEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat-N~~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
|+.++|+....++|+..||+- |..+.+|..| |+. .+.+++.||+-.
T Consensus 97 ~~~e~m~~~a~NaLLK~LEEP-------------p~~t~~il~~~~~~-------------kll~TI~SRc~~ 143 (299)
T PRK07132 97 KNIEKTSNSLLNALLKTIEEP-------------PKDTYFLLTTKNIN-------------KVLPTIVSRCQV 143 (299)
T ss_pred ecccccCHHHHHHHHHHhhCC-------------CCCeEEEEEeCChH-------------hChHHHHhCeEE
Confidence 999999999999999999972 3455555544 442 566789999854
No 282
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.31 E-value=0.003 Score=67.99 Aligned_cols=127 Identities=17% Similarity=0.194 Sum_probs=72.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhh---hccCCeeeccccccc---
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV---LADGGLCCIDEFDSM--- 421 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~---~a~~gvl~iDEid~l--- 421 (663)
..+||.||||+|||.||--+|..+.-|++..-......|++.++- ...-.+.+. .+.-.|+++|+++++
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaK-----c~~i~k~F~DAYkS~lsiivvDdiErLiD~ 613 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAK-----CAHIKKIFEDAYKSPLSIIVVDDIERLLDY 613 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHH-----HHHHHHHHHHhhcCcceEEEEcchhhhhcc
Confidence 689999999999999999999999888887543333344432110 000111222 234569999999985
Q ss_pred ---ChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCC
Q 006051 422 ---REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKN 496 (663)
Q Consensus 422 ---~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~ 496 (663)
.|.-.+.+++++-=---.-...| -+..|++||.....+.. -.+++-|+-.+.++....
T Consensus 614 vpIGPRfSN~vlQaL~VllK~~ppkg------~kLli~~TTS~~~vL~~-----------m~i~~~F~~~i~Vpnl~~ 674 (744)
T KOG0741|consen 614 VPIGPRFSNLVLQALLVLLKKQPPKG------RKLLIFGTTSRREVLQE-----------MGILDCFSSTIHVPNLTT 674 (744)
T ss_pred cccCchhhHHHHHHHHHHhccCCCCC------ceEEEEecccHHHHHHH-----------cCHHHhhhheeecCccCc
Confidence 45555666665431000001111 24577888776311100 025566777776655444
No 283
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=96.25 E-value=0.0075 Score=58.79 Aligned_cols=87 Identities=20% Similarity=0.230 Sum_probs=44.4
Q ss_pred ccccccCCCchHHHHHHHHHHhc---CCceEEeCCCccc-------CCceEEEeecC-chhHh--hhhhhhhccCCeeec
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTS-------AGLTVTAVKDG-GEWML--EAGALVLADGGLCCI 415 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~-------~gl~~~~~~~~-~~~~~--~~g~l~~a~~gvl~i 415 (663)
-.++.|+||||||++++.+.+.. +..++........ .+..+..+..- ..... ..+........+++|
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vliV 99 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLIV 99 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEEE
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEEE
Confidence 46778999999999999887643 2333332221111 01111110000 00000 000000234469999
Q ss_pred ccccccChhhHHhHHHHHHh
Q 006051 416 DEFDSMREHDRATIHEAMEQ 435 (663)
Q Consensus 416 DEid~l~~~~~~~L~~~me~ 435 (663)
||..+++......|++....
T Consensus 100 DEasmv~~~~~~~ll~~~~~ 119 (196)
T PF13604_consen 100 DEASMVDSRQLARLLRLAKK 119 (196)
T ss_dssp SSGGG-BHHHHHHHHHHS-T
T ss_pred ecccccCHHHHHHHHHHHHh
Confidence 99999999887778777654
No 284
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=96.24 E-value=0.003 Score=57.92 Aligned_cols=27 Identities=44% Similarity=0.621 Sum_probs=23.0
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceE
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~ 376 (663)
|+++|+||+|||++++.+++..+..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~i 28 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVVI 28 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEEE
Confidence 689999999999999999988774333
No 285
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=96.17 E-value=0.011 Score=55.22 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=21.2
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCce
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
.|+++|.||||||++++.++ ..+...
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~ 27 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKV 27 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCce
Confidence 47899999999999999999 444333
No 286
>PRK13947 shikimate kinase; Provisional
Probab=96.16 E-value=0.0039 Score=59.19 Aligned_cols=31 Identities=32% Similarity=0.353 Sum_probs=28.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
||+|+|+||+|||++++.+++.++.+++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999998887754
No 287
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.11 E-value=0.006 Score=60.20 Aligned_cols=24 Identities=38% Similarity=0.671 Sum_probs=20.7
Q ss_pred ccccccccccCCCchHHHHHHHHH
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia 368 (663)
+.+..+|++|+||+|||++|+.++
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcC
Confidence 345679999999999999999875
No 288
>PRK00131 aroK shikimate kinase; Reviewed
Probab=96.10 E-value=0.0045 Score=58.73 Aligned_cols=30 Identities=30% Similarity=0.410 Sum_probs=27.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.+|+|+|+||+|||++++.+++.++.+++.
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 689999999999999999999998777765
No 289
>COG4930 Predicted ATP-dependent Lon-type protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.11 Score=54.30 Aligned_cols=130 Identities=20% Similarity=0.246 Sum_probs=74.5
Q ss_pred HHHhhcc--ccccCchh--HHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCC
Q 006051 306 NAILRGI--CPQVFGLF--TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG 381 (663)
Q Consensus 306 ~~l~~si--~p~i~G~~--~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~ 381 (663)
+.|++|| -|.++... -.-.+-+..|+- ++.|++=.||.+||||.+-|- .+|...+.+|.-
T Consensus 193 dVLirsiGmePa~~e~rtkwhll~RlvplVE-------------nNyN~cElGPr~TGKshvYke---vSpn~~liSGGq 256 (683)
T COG4930 193 DVLIRSIGMEPAVYEPRTKWHLLARLVPLVE-------------NNYNMCELGPRQTGKSHVYKE---VSPNVRLISGGQ 256 (683)
T ss_pred HHHHHhcCCCccccChhhhHHHHHHHHHHhh-------------CCcchhhcCCCccCccceehc---cCCceEEeeCCc
Confidence 5677776 45555432 122233344443 358999999999999988653 456666665543
Q ss_pred cccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccC---hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 382 STSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMR---EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 382 ~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~---~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
.+.+.|... -..-.+|.+.+ -.++.+||...+. ++-...|...|++|.+ .+......-++...+++-
T Consensus 257 ttvAnLFYN------matrqiGlvg~--wDvVaFDEVagirFkdkDg~qilKDYMaSGsf--~RG~~~v~~~ASlVFvGN 326 (683)
T COG4930 257 TTVANLFYN------MATRQIGLVGL--WDVVAFDEVAGIRFKDKDGMQILKDYMASGSF--ERGDKKVVSDASLVFVGN 326 (683)
T ss_pred ccHHHHHHH------Hhhccccceee--eeeeeehhhccccccCccHHHHHHHHHhcCCc--ccccccccccceEEEEec
Confidence 333322210 01112333322 2378899998873 4455668889999976 444444444555566665
Q ss_pred eCC
Q 006051 459 TNP 461 (663)
Q Consensus 459 tN~ 461 (663)
.|.
T Consensus 327 vnq 329 (683)
T COG4930 327 VNQ 329 (683)
T ss_pred ccc
Confidence 564
No 290
>PRK14532 adenylate kinase; Provisional
Probab=96.05 E-value=0.0046 Score=59.78 Aligned_cols=30 Identities=27% Similarity=0.370 Sum_probs=26.1
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
+|+++|+||+|||++++.+++..+...+.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~ 31 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLST 31 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeC
Confidence 589999999999999999999887666654
No 291
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=96.04 E-value=0.0081 Score=60.37 Aligned_cols=117 Identities=15% Similarity=0.037 Sum_probs=67.8
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC--CceEEeCC------CcccCCceEEEeecC----c-hhHhh-hhhhhh-----
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN--RSVITTGL------GSTSAGLTVTAVKDG----G-EWMLE-AGALVL----- 407 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~--~~~~~~~~------~~~~~gl~~~~~~~~----~-~~~~~-~g~l~~----- 407 (663)
++-+||+|++|+||..+|.++|+..- ...-.+|. ......-+...+... + +...+ ...+..
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 86 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhc
Confidence 46789999999999999999997532 11000110 000001111111111 1 00000 111111
Q ss_pred ccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh
Q 006051 408 ADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 408 a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
+..-|++|+++++|+....++|+..+|+- |.++.+|..|+.. ..+.+.++||+-.
T Consensus 87 ~~~KV~II~~ae~m~~~AaNaLLK~LEEP-------------p~~t~fiLit~~~------------~~lLpTI~SRCq~ 141 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQSANSLLKLIEEP-------------PKNTYGIFTTRNE------------NNILNTILSRCVQ 141 (261)
T ss_pred CCCEEEEeccHhhhCHHHHHHHHHhhcCC-------------CCCeEEEEEECCh------------HhCchHhhhheee
Confidence 23459999999999999999999999973 3444555555433 2677899999854
Q ss_pred h
Q 006051 488 V 488 (663)
Q Consensus 488 i 488 (663)
+
T Consensus 142 ~ 142 (261)
T PRK05818 142 Y 142 (261)
T ss_pred e
Confidence 3
No 292
>PF05729 NACHT: NACHT domain
Probab=96.03 E-value=0.009 Score=55.89 Aligned_cols=21 Identities=43% Similarity=0.771 Sum_probs=19.0
Q ss_pred cccccCCCchHHHHHHHHHHh
Q 006051 350 LLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~ 370 (663)
++++|+||+|||++++.++..
T Consensus 3 l~I~G~~G~GKStll~~~~~~ 23 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQ 23 (166)
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999998863
No 293
>PRK03839 putative kinase; Provisional
Probab=96.03 E-value=0.0044 Score=59.45 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=27.2
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
.|+|+|+||+|||++++.+++..+.+++..+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4899999999999999999999888776643
No 294
>PTZ00088 adenylate kinase 1; Provisional
Probab=96.00 E-value=0.0058 Score=60.96 Aligned_cols=33 Identities=33% Similarity=0.574 Sum_probs=28.7
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
+..|+|+||||+|||++++.+++..+...+.+|
T Consensus 6 ~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 6 PLKIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 366999999999999999999998887777654
No 295
>PRK00625 shikimate kinase; Provisional
Probab=95.96 E-value=0.005 Score=58.63 Aligned_cols=31 Identities=32% Similarity=0.444 Sum_probs=27.6
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
+|+|+|.||+|||++++.+++....+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 6899999999999999999999888777643
No 296
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=95.90 E-value=0.0059 Score=56.68 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.1
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
+|+|+|+||+|||++++.+++..+..++..
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~ 30 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDL 30 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 589999999999999999999887776653
No 297
>PRK10536 hypothetical protein; Provisional
Probab=95.87 E-value=0.02 Score=57.48 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.0
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..++++||+|||||.|+.+++.
T Consensus 75 ~lV~i~G~aGTGKT~La~a~a~ 96 (262)
T PRK10536 75 QLIFATGEAGCGKTWISAAKAA 96 (262)
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999886
No 298
>PRK13949 shikimate kinase; Provisional
Probab=95.84 E-value=0.0061 Score=57.88 Aligned_cols=30 Identities=33% Similarity=0.372 Sum_probs=26.9
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
+|+|+|+||+|||++++.+++.+..+++.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~ 32 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDL 32 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecc
Confidence 589999999999999999999988777654
No 299
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.80 E-value=0.13 Score=53.88 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=68.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
.=++|+|+.|+|||++++.+.++.+....+.... +.... .+++. .+...+...-+++.||++.-.....+
T Consensus 77 ~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~-----~~~~~-~~~~~----f~~a~l~gk~l~~~~E~~~~~~~~~~ 146 (304)
T TIGR01613 77 KLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVAS-----LKMNE-FQEHR----FGLARLEGKRAVIGDEVQKGYRDDES 146 (304)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhChhhccCCcc-----hhhhh-ccCCC----chhhhhcCCEEEEecCCCCCccccHH
Confidence 4588899999999999999999887643211000 00000 01111 11122344558889998754333334
Q ss_pred hHHHHHHhceeeeeccC-ceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh
Q 006051 428 TIHEAMEQQTISVAKAG-LVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 428 ~L~~~me~~~i~i~k~g-~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
.|..+.....+++...+ ........+.+|.+||..-.+. .-+.++.+|+-+
T Consensus 147 ~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~~tN~~P~~~---------~~~~a~~RR~~v 198 (304)
T TIGR01613 147 TFKSLTGGDTITARFKNKDPFEFTPKFTLVQSTNHLPRIR---------GFDGGIKRRLRI 198 (304)
T ss_pred hhhhhhcCCeEEeecccCCcEEEEEeeEEEEEcCCCCccC---------CCChhheeeEEE
Confidence 55555555556554333 3344556778899999752221 123478888843
No 300
>PRK14530 adenylate kinase; Provisional
Probab=95.79 E-value=0.007 Score=59.94 Aligned_cols=31 Identities=32% Similarity=0.417 Sum_probs=26.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.+|+|+|+||+|||++++.+++..+...+.+
T Consensus 4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4699999999999999999999887766654
No 301
>PRK07261 topology modulation protein; Provisional
Probab=95.76 E-value=0.0074 Score=57.46 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=24.6
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.|+++|+||+|||+|++.+++..+-+.+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~ 30 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLH 30 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEe
Confidence 48899999999999999999877665554
No 302
>PHA00729 NTP-binding motif containing protein
Probab=95.74 E-value=0.0054 Score=60.49 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=22.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.+++++|+||||||+||.++++.+.
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999998653
No 303
>PRK04296 thymidine kinase; Provisional
Probab=95.73 E-value=0.025 Score=54.80 Aligned_cols=21 Identities=29% Similarity=0.173 Sum_probs=17.0
Q ss_pred cccccCCCchHHHHHHHHHHh
Q 006051 350 LLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~ 370 (663)
++++||||+|||+++..++..
T Consensus 5 ~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 678999999999877666643
No 304
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=95.72 E-value=0.017 Score=64.58 Aligned_cols=31 Identities=35% Similarity=0.549 Sum_probs=27.0
Q ss_pred CccccccccccccCCCchHHHHHHHHHHhcC
Q 006051 342 TKVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 342 ~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..+++.-++|+.|++|+|||+|+|+++.+-|
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP 444 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWP 444 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCc
Confidence 3456678999999999999999999999755
No 305
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=95.71 E-value=0.0066 Score=58.08 Aligned_cols=30 Identities=37% Similarity=0.528 Sum_probs=25.1
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.|+++|+||+|||++|+.+++..+-+-+.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlst 31 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDT 31 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcH
Confidence 489999999999999999999866555443
No 306
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=95.66 E-value=0.0086 Score=57.50 Aligned_cols=28 Identities=18% Similarity=0.334 Sum_probs=24.0
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
|+++|+||+|||++++.+++..+-..+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~is 29 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTHLS 29 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 6899999999999999999987655544
No 307
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=95.61 E-value=0.058 Score=55.58 Aligned_cols=55 Identities=18% Similarity=0.247 Sum_probs=42.2
Q ss_pred cCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEee-CCCCCCCCCCccccccCCChhhhhhhhh
Q 006051 409 DGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT-NPKGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 409 ~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat-N~~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
..-|++||++|+|+....++|+..+|+- +.++.+|..| |+. .+.|.++||+-.
T Consensus 104 ~~kV~II~~ad~m~~~AaNaLLKtLEEP-------------p~~t~~iL~t~~~~-------------~lLpTI~SRcq~ 157 (290)
T PRK07276 104 KQQVFIIKDADKMHVNAANSLLKVIEEP-------------QSEIYIFLLTNDEN-------------KVLPTIKSRTQI 157 (290)
T ss_pred CcEEEEeehhhhcCHHHHHHHHHHhcCC-------------CCCeEEEEEECChh-------------hCchHHHHccee
Confidence 4569999999999999999999999973 3344555555 543 677899999965
Q ss_pred hh
Q 006051 488 VL 489 (663)
Q Consensus 488 i~ 489 (663)
+-
T Consensus 158 i~ 159 (290)
T PRK07276 158 FH 159 (290)
T ss_pred ee
Confidence 44
No 308
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=95.56 E-value=0.051 Score=53.92 Aligned_cols=198 Identities=19% Similarity=0.171 Sum_probs=102.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe----CCCcccCCceEEEeec---CchhHhh-------hhhhhhc----c
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT----GLGSTSAGLTVTAVKD---GGEWMLE-------AGALVLA----D 409 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~----~~~~~~~gl~~~~~~~---~~~~~~~-------~g~l~~a----~ 409 (663)
.-+.++|+-|+|||.+.|++....+..-... ....+..++...+..+ ...|... .+...+. .
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r 131 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKR 131 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCC
Confidence 3588899999999999997777665432211 1111111111110000 0111111 1111111 2
Q ss_pred CCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhh
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVL 489 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~ 489 (663)
+-++++||...+..+....|...++--.- .....+++-..-|. .++.. ....-..+-.|+++-+
T Consensus 132 ~v~l~vdEah~L~~~~le~Lrll~nl~~~----------~~~~l~ivL~Gqp~--L~~~l----r~~~l~e~~~R~~ir~ 195 (269)
T COG3267 132 PVVLMVDEAHDLNDSALEALRLLTNLEED----------SSKLLSIVLIGQPK--LRPRL----RLPVLRELEQRIDIRI 195 (269)
T ss_pred CeEEeehhHhhhChhHHHHHHHHHhhccc----------ccCceeeeecCCcc--cchhh----chHHHHhhhheEEEEE
Confidence 35889999999999888887766542110 01123555555554 11100 0011123445777655
Q ss_pred hhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCC
Q 006051 490 VLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNA 569 (663)
Q Consensus 490 ~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~ 569 (663)
.+.+....+...-+. |.+ .-+ ....|.++++|...+...
T Consensus 196 ~l~P~~~~~t~~yl~-~~L---------------------------e~a-~~~~~l~~~~a~~~i~~~------------ 234 (269)
T COG3267 196 ELPPLTEAETGLYLR-HRL---------------------------EGA-GLPEPLFSDDALLLIHEA------------ 234 (269)
T ss_pred ecCCcChHHHHHHHH-HHH---------------------------hcc-CCCcccCChhHHHHHHHH------------
Confidence 553333322222221 111 111 123567888888777654
Q ss_pred ccccHhHHHHHHHHHHHHHhccCCCccChhhHH
Q 006051 570 ARTTVRMLESLIRLAQAHARLMFRNEVTRLDAI 602 (663)
Q Consensus 570 ~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~ 602 (663)
..+.+|....+..+|.-.|..-.++.|++..+.
T Consensus 235 sqg~P~lin~~~~~Al~~a~~a~~~~v~~a~~~ 267 (269)
T COG3267 235 SQGIPRLINNLATLALDAAYSAGEDGVSEAEIK 267 (269)
T ss_pred hccchHHHHHHHHHHHHHHHHcCCCccchhhcc
Confidence 223578888888888888887778777766543
No 309
>PRK06217 hypothetical protein; Validated
Probab=95.56 E-value=0.01 Score=57.19 Aligned_cols=31 Identities=16% Similarity=0.259 Sum_probs=27.1
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
+|+|+|.||+|||++++.+++.++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5899999999999999999999887776543
No 310
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.56 E-value=0.017 Score=55.30 Aligned_cols=86 Identities=23% Similarity=0.266 Sum_probs=51.9
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcCC--ceEEeCCCcccCCceEEEeec-----Cchh-HhhhhhhhhccCCeeec
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLGSTSAGLTVTAVKD-----GGEW-MLEAGALVLADGGLCCI 415 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~~--~~~~~~~~~~~~gl~~~~~~~-----~~~~-~~~~g~l~~a~~gvl~i 415 (663)
+...-.+.|+||.|+|||+|++.++.+.+. +-+... |........ +|+. ..........+..++++
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~------g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllL 95 (177)
T cd03222 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWD------GITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLF 95 (177)
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEEC------CEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 344467889999999999999999987542 111111 111111111 1221 11222223457889999
Q ss_pred ccccc-cChhhHHhHHHHHHh
Q 006051 416 DEFDS-MREHDRATIHEAMEQ 435 (663)
Q Consensus 416 DEid~-l~~~~~~~L~~~me~ 435 (663)
||-.. ++...+..+.+++.+
T Consensus 96 DEPts~LD~~~~~~l~~~l~~ 116 (177)
T cd03222 96 DEPSAYLDIEQRLNAARAIRR 116 (177)
T ss_pred ECCcccCCHHHHHHHHHHHHH
Confidence 99864 777777777777764
No 311
>PF13245 AAA_19: Part of AAA domain
Probab=95.55 E-value=0.017 Score=46.89 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=17.0
Q ss_pred cccccCCCchHH-HHHHHHHHhc
Q 006051 350 LLLVGDPGTGKS-QFLKFAAKLS 371 (663)
Q Consensus 350 iLL~G~pGtGKs-~lar~ia~~~ 371 (663)
+++.|||||||| ++++.++.+.
T Consensus 13 ~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 13 FVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 555999999999 5666666665
No 312
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.55 E-value=0.044 Score=53.49 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.3
Q ss_pred cccccCCCchHHHHHHHHHHhcC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
++++||+|+|||++++++....+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 79999999999999998877654
No 313
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=95.51 E-value=0.036 Score=61.94 Aligned_cols=29 Identities=38% Similarity=0.400 Sum_probs=24.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
-+||+||||||||++++.+++..+..+..
T Consensus 47 iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 47 ILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 57889999999999999999987654443
No 314
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=95.41 E-value=0.012 Score=57.02 Aligned_cols=29 Identities=34% Similarity=0.480 Sum_probs=24.7
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
+|+++|+||+|||++++.+++..+...+.
T Consensus 1 ~I~i~G~pGsGKst~a~~La~~~~~~~i~ 29 (194)
T cd01428 1 RILLLGPPGSGKGTQAERLAKKYGLPHIS 29 (194)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEE
Confidence 37999999999999999999987655554
No 315
>PRK14531 adenylate kinase; Provisional
Probab=95.40 E-value=0.011 Score=56.82 Aligned_cols=30 Identities=27% Similarity=0.403 Sum_probs=25.6
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.|+++|+||+|||++++.+++..+...+.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 599999999999999999999876655543
No 316
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=95.38 E-value=0.011 Score=55.66 Aligned_cols=32 Identities=34% Similarity=0.389 Sum_probs=29.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
.+|.|+|.+|+|||++.+.+|+.++.+|+.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 57999999999999999999999999988754
No 317
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.38 E-value=0.018 Score=67.50 Aligned_cols=83 Identities=27% Similarity=0.348 Sum_probs=47.5
Q ss_pred ccccccCCCchHHHHHHHHHHhc---CCceEEeCCCccc-------CCceEEEeecCchhH--hhhhhhhhccCCeeecc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTS-------AGLTVTAVKDGGEWM--LEAGALVLADGGLCCID 416 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~-------~gl~~~~~~~~~~~~--~~~g~l~~a~~gvl~iD 416 (663)
-++|.|+||||||++++++...+ +..+......+.. .|..+..+ ..+. ...+.-.+....+++||
T Consensus 370 ~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~~g~~a~Ti---~~~~~~~~~~~~~~~~~~llIvD 446 (744)
T TIGR02768 370 IAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAESGIESRTL---ASLEYAWANGRDLLSDKDVLVID 446 (744)
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhccCCceeeH---HHHHhhhccCcccCCCCcEEEEE
Confidence 47899999999999999987653 3333332211110 11111100 0111 11122223456799999
Q ss_pred cccccChhhHHhHHHHHH
Q 006051 417 EFDSMREHDRATIHEAME 434 (663)
Q Consensus 417 Eid~l~~~~~~~L~~~me 434 (663)
|+.+++......|+....
T Consensus 447 EasMv~~~~~~~Ll~~~~ 464 (744)
T TIGR02768 447 EAGMVGSRQMARVLKEAE 464 (744)
T ss_pred CcccCCHHHHHHHHHHHH
Confidence 999999887777766443
No 318
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=95.35 E-value=0.013 Score=55.12 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.2
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceE
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~ 376 (663)
++++|+||+|||++++.+++.++..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v 27 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI 27 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE
Confidence 468999999999999999998875554
No 319
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=95.33 E-value=0.011 Score=56.56 Aligned_cols=30 Identities=17% Similarity=0.272 Sum_probs=25.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|.|+||+|||++++.+++.++..++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~ 32 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLH 32 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccc
Confidence 358999999999999999999988766554
No 320
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=95.33 E-value=0.014 Score=55.55 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=28.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
.+|+|+|++|+|||++++.+++..+.+++..+
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 57999999999999999999999887776643
No 321
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.32 E-value=0.013 Score=62.98 Aligned_cols=87 Identities=20% Similarity=0.197 Sum_probs=50.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCccc-----CCceEEEeecC----chh-Hh--h---hhhhhhcc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTS-----AGLTVTAVKDG----GEW-ML--E---AGALVLAD 409 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~-----~gl~~~~~~~~----~~~-~~--~---~g~l~~a~ 409 (663)
.++.+.|+.|||||.+++++.+.... .+..+...+.+ .|.|....+.- ... .. . .-.-.+.+
T Consensus 23 ~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~~~~~~~~~~~~~~~~~~~l~~ 102 (364)
T PF05970_consen 23 LNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPINNNEKSQCKISKNSRLRERLRK 102 (364)
T ss_pred cEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccccccccccccccccchhhhhhhh
Confidence 68999999999999999999876533 23333221111 23332222211 000 00 0 00011233
Q ss_pred CCeeecccccccChhhHHhHHHHHH
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAME 434 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me 434 (663)
-.+++|||+.+++......+...|.
T Consensus 103 ~~~lIiDEism~~~~~l~~i~~~lr 127 (364)
T PF05970_consen 103 ADVLIIDEISMVSADMLDAIDRRLR 127 (364)
T ss_pred heeeecccccchhHHHHHHHHHhhh
Confidence 4699999999999887777766554
No 322
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=95.25 E-value=0.014 Score=54.07 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=22.9
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceE
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~ 376 (663)
++|+|+||+|||++++.+++..+..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 678999999999999999998655444
No 323
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.23 E-value=0.011 Score=63.36 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.3
Q ss_pred ccccccCCCchHHHHHHHHHHhc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-+++.|.||||||.||-.+++.+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47889999999999999888866
No 324
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=95.21 E-value=0.033 Score=58.52 Aligned_cols=95 Identities=22% Similarity=0.251 Sum_probs=58.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhH-
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDR- 426 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~- 426 (663)
.-++|+|||+||||+++-.+.+.+...+++.-.. ...+.+. .+++..|.+||+....-=+-.
T Consensus 263 nClvi~GPPdTGKS~F~~SLi~Fl~GkViSf~Ns-------------~ShFWLq----PL~d~Ki~llDDAT~~cW~Y~D 325 (432)
T PF00519_consen 263 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS-------------KSHFWLQ----PLADAKIALLDDATYPCWDYID 325 (432)
T ss_dssp SEEEEESSCCCSHHHHHHHHHHHHTSEEE-GGGT-------------TSCGGGG----GGCT-SSEEEEEE-HHHHHHHH
T ss_pred cEEEEECCCCCchhHHHHHHHHHhCCEEEEecCC-------------CCccccc----chhcCcEEEEcCCcccHHHHHH
Confidence 4688999999999999999998877666543211 1223232 467778999999866332222
Q ss_pred HhHHHHHHhceeeee---ccCceeecCCcEEEEEeeCCC
Q 006051 427 ATIHEAMEQQTISVA---KAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 427 ~~L~~~me~~~i~i~---k~g~~~~~~~~~~iiaatN~~ 462 (663)
.-|..+++-..+++- |+-.....| -++.|||-.
T Consensus 326 ~ylRNaLDGN~vsiD~KHkap~Qik~P---PLlITsN~d 361 (432)
T PF00519_consen 326 TYLRNALDGNPVSIDCKHKAPVQIKCP---PLLITSNID 361 (432)
T ss_dssp HHTHHHHCTSEEEEEESSSEEEEEE------EEEEESS-
T ss_pred HHHHhccCCCeeeeeccCCCceEeecC---ceEEecCCC
Confidence 246677887788774 333333444 466788875
No 325
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.20 E-value=0.027 Score=65.78 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=34.3
Q ss_pred cccccCc-hhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc
Q 006051 312 ICPQVFG-LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 312 i~p~i~G-~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+.|-+.+ .+++++.+....-. ...|=+|+|+||+|||.++..+++-.
T Consensus 185 ldPvigr~deeirRvi~iL~Rr-------------tk~NPvLVG~~gvgktaiv~gla~ri 232 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRK-------------TKNNPVLVGEPGVGKTAIVEGLAQRI 232 (898)
T ss_pred CCCccCCchHHHHHHHHHHhcc-------------CCCCceEEecCCCCchhHHHHHHHHh
Confidence 5666666 66888777654321 11578999999999999999999754
No 326
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.19 E-value=0.057 Score=51.58 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=22.1
Q ss_pred ccccccccccccCCCchHHHHHHHHHH
Q 006051 343 KVRGESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+.+..-+.|+||.|+|||+|++.+..
T Consensus 17 ~i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 17 SIPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 344456789999999999999999853
No 327
>PRK13948 shikimate kinase; Provisional
Probab=95.18 E-value=0.018 Score=55.30 Aligned_cols=34 Identities=26% Similarity=0.147 Sum_probs=29.9
Q ss_pred cccccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
...+|+|+|.+|+|||++++.+++.++.+++...
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 3478999999999999999999999988887654
No 328
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=95.18 E-value=0.011 Score=52.85 Aligned_cols=22 Identities=32% Similarity=0.413 Sum_probs=20.4
Q ss_pred cccccCCCchHHHHHHHHHHhc
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~ 371 (663)
|+|.|.||+|||++++.+++..
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999876
No 329
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.14 E-value=0.018 Score=55.08 Aligned_cols=26 Identities=31% Similarity=0.547 Sum_probs=18.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.+++++|++|+|||++++.+......
T Consensus 25 ~~~ll~G~~G~GKT~ll~~~~~~~~~ 50 (185)
T PF13191_consen 25 RNLLLTGESGSGKTSLLRALLDRLAE 50 (185)
T ss_dssp --EEE-B-TTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 68999999999999999987765443
No 330
>PRK13946 shikimate kinase; Provisional
Probab=95.11 E-value=0.017 Score=55.71 Aligned_cols=34 Identities=26% Similarity=0.365 Sum_probs=29.6
Q ss_pred cccccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
...+|+|+|.||+|||++++.+++.++.+++...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 3468999999999999999999999888877643
No 331
>PLN02200 adenylate kinase family protein
Probab=95.09 E-value=0.02 Score=57.38 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=26.5
Q ss_pred cccccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.+..++++|+||+|||++++.+++..+...+.
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~his 73 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHLS 73 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 34678999999999999999999887655444
No 332
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.08 E-value=0.033 Score=51.31 Aligned_cols=85 Identities=27% Similarity=0.361 Sum_probs=51.9
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcCC--c-eEEeCCCcccCCceEEEee--cCchhH-hhhhhhhhccCCeeecccc
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNR--S-VITTGLGSTSAGLTVTAVK--DGGEWM-LEAGALVLADGGLCCIDEF 418 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~~--~-~~~~~~~~~~~gl~~~~~~--~~~~~~-~~~g~l~~a~~gvl~iDEi 418 (663)
.....+.+.|++|+|||+|++.++.+.+. + ++..+. .....+. ..|+.. ..-......+.-++++||-
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~------~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP 97 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST------VKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEP 97 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe------EEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 34467899999999999999999987642 1 111110 1111111 112211 1111122347789999998
Q ss_pred cc-cChhhHHhHHHHHHh
Q 006051 419 DS-MREHDRATIHEAMEQ 435 (663)
Q Consensus 419 d~-l~~~~~~~L~~~me~ 435 (663)
.. ++.+.+..+.+.+.+
T Consensus 98 ~~~LD~~~~~~l~~~l~~ 115 (144)
T cd03221 98 TNHLDLESIEALEEALKE 115 (144)
T ss_pred ccCCCHHHHHHHHHHHHH
Confidence 64 788888888888864
No 333
>PRK14528 adenylate kinase; Provisional
Probab=95.02 E-value=0.017 Score=55.71 Aligned_cols=30 Identities=27% Similarity=0.482 Sum_probs=25.5
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
++++.||||+|||++++.+++..+.+.+..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 589999999999999999998776665553
No 334
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=95.02 E-value=0.016 Score=46.08 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred cccccCCCchHHHHHHHHHHhc
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+.+.|+||+|||++++.+++..
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999875
No 335
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=95.02 E-value=0.017 Score=56.93 Aligned_cols=29 Identities=38% Similarity=0.495 Sum_probs=24.9
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
|+++|+||+|||++++.+++..+...+.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 78999999999999999998777666553
No 336
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.99 E-value=0.05 Score=50.82 Aligned_cols=92 Identities=23% Similarity=0.278 Sum_probs=52.8
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcCC--ceEEeCCCcccCC------ceEEEe--ecCchhH-hhhhhhhhccCCe
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLGSTSAG------LTVTAV--KDGGEWM-LEAGALVLADGGL 412 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~~--~~~~~~~~~~~~g------l~~~~~--~~~~~~~-~~~g~l~~a~~gv 412 (663)
+.+...+.|+|++|+|||+|++.++.+.+. +-+..+....... -....+ ..+|+.. .........+..+
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i 101 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDL 101 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCE
Confidence 344467899999999999999999987542 1111111000000 001111 1112211 1122223347889
Q ss_pred eecccccc-cChhhHHhHHHHHHh
Q 006051 413 CCIDEFDS-MREHDRATIHEAMEQ 435 (663)
Q Consensus 413 l~iDEid~-l~~~~~~~L~~~me~ 435 (663)
+++||... ++...+..+.+.+.+
T Consensus 102 ~ilDEp~~~lD~~~~~~l~~~l~~ 125 (157)
T cd00267 102 LLLDEPTSGLDPASRERLLELLRE 125 (157)
T ss_pred EEEeCCCcCCCHHHHHHHHHHHHH
Confidence 99999974 777788888888764
No 337
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=94.96 E-value=0.015 Score=55.93 Aligned_cols=29 Identities=21% Similarity=0.377 Sum_probs=23.6
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
-++++|+||+|||++++.+++..+...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 47889999999999999999876544443
No 338
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=94.92 E-value=0.062 Score=61.16 Aligned_cols=36 Identities=36% Similarity=0.395 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHh
Q 006051 320 FTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 320 ~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+.-|.|+..++-. .-.++.|+||||||+++..+...
T Consensus 148 ~~Qk~A~~~al~~---------------~~~vitGgpGTGKTt~v~~ll~~ 183 (586)
T TIGR01447 148 NWQKVAVALALKS---------------NFSLITGGPGTGKTTTVARLLLA 183 (586)
T ss_pred HHHHHHHHHHhhC---------------CeEEEEcCCCCCHHHHHHHHHHH
Confidence 5667788887755 35788999999999987776543
No 339
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.019 Score=52.82 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=27.0
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEEeCC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTGL 380 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~ 380 (663)
|-+.|+||||||++++.+|+..+.+++..|.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~ 33 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVSAGT 33 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceeeccH
Confidence 4578999999999999999999988887553
No 340
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.92 E-value=0.019 Score=52.67 Aligned_cols=30 Identities=33% Similarity=0.462 Sum_probs=25.9
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
|.+.|+||+|||++++.+++..+.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 578999999999999999998887776643
No 341
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.90 E-value=0.052 Score=65.36 Aligned_cols=85 Identities=24% Similarity=0.362 Sum_probs=52.4
Q ss_pred cccccccCCCchHHHHHHHHHHhc---CCceEEeCCCccc-------CCceEEEeecCchhHh--hhhhhhhccCCeeec
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTS-------AGLTVTAVKDGGEWML--EAGALVLADGGLCCI 415 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~-------~gl~~~~~~~~~~~~~--~~g~l~~a~~gvl~i 415 (663)
.-.++.|++|||||++++.+.... +..++.....+.. .|+....+ ..|.+ ..|...+..+.|++|
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e~~Gi~a~TI---as~ll~~~~~~~~l~~~~vlVI 474 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEKEAGIQSRTL---SSWELRWNQGRDQLDNKTVFVL 474 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHHhhCCCeeeH---HHHHhhhccCccCCCCCcEEEE
Confidence 347899999999999999998753 3344433222111 12221111 11111 123333445679999
Q ss_pred ccccccChhhHHhHHHHHHh
Q 006051 416 DEFDSMREHDRATIHEAMEQ 435 (663)
Q Consensus 416 DEid~l~~~~~~~L~~~me~ 435 (663)
||..+++......|++..+.
T Consensus 475 DEAsMv~~~~m~~Ll~~~~~ 494 (1102)
T PRK13826 475 DEAGMVASRQMALFVEAVTR 494 (1102)
T ss_pred ECcccCCHHHHHHHHHHHHh
Confidence 99999999888888887764
No 342
>PRK14526 adenylate kinase; Provisional
Probab=94.90 E-value=0.02 Score=56.47 Aligned_cols=31 Identities=35% Similarity=0.587 Sum_probs=25.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
+++|+|+||+|||++++.+++..+...+.+|
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G 32 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTG 32 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecC
Confidence 4889999999999999999987665555433
No 343
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.87 E-value=0.076 Score=54.30 Aligned_cols=26 Identities=23% Similarity=0.441 Sum_probs=23.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.|++++||||+|||++++.++.....
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 58999999999999999999987643
No 344
>PRK06762 hypothetical protein; Provisional
Probab=94.83 E-value=0.022 Score=53.70 Aligned_cols=27 Identities=22% Similarity=0.427 Sum_probs=22.9
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCce
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
-++++|+||+|||++++.+++..+.++
T Consensus 4 li~i~G~~GsGKST~A~~L~~~l~~~~ 30 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAKQLQERLGRGT 30 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 478899999999999999998775443
No 345
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.81 E-value=0.023 Score=53.93 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=26.9
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
+++|+|.||+|||++++.+++..+.+++..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~ 33 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDT 33 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEc
Confidence 588999999999999999999988877764
No 346
>PRK02496 adk adenylate kinase; Provisional
Probab=94.80 E-value=0.019 Score=55.31 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=24.6
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.++++|+||+|||++++.+++..+...+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 48899999999999999999877655554
No 347
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=94.77 E-value=0.023 Score=52.61 Aligned_cols=31 Identities=35% Similarity=0.553 Sum_probs=25.8
Q ss_pred CccccccccccccCCCchHHHHHHHHHHhcC
Q 006051 342 TKVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 342 ~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...+..--++++||+|+|||+|+|.++.+.+
T Consensus 24 l~v~~Ge~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eeecCCceEEEeCCCCccHHHHHHHHHhccC
Confidence 3445556799999999999999999998754
No 348
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=94.75 E-value=0.013 Score=61.27 Aligned_cols=102 Identities=17% Similarity=0.290 Sum_probs=54.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE------ee---------cCchhHhhhhh----hhh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA------VK---------DGGEWMLEAGA----LVL 407 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~------~~---------~~~~~~~~~g~----l~~ 407 (663)
+..+.|+|+-|||||+|+.......+. +..... ....++.... ++ ....|.+.+=. -..
T Consensus 114 PkGlYlYG~VGcGKTmLMDlFy~~~~~-i~rkqR-vHFh~fM~~VH~r~H~~k~~~~~~~~~~a~~~~~Dpl~~vA~eIa 191 (467)
T KOG2383|consen 114 PKGLYLYGSVGCGKTMLMDLFYDALPP-IWRKQR-VHFHGFMLSVHKRMHELKQEQGAEKPGYAKSWEIDPLPVVADEIA 191 (467)
T ss_pred CceEEEecccCcchhHHHHHHhhcCCc-hhhhhh-hhHHHHHHHHHHHHHHHHHhccccCccccccccCCccHHHHHHHh
Confidence 467999999999999999887654433 111000 0000000000 00 00012222111 112
Q ss_pred ccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 408 ADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 408 a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
.+..++|+|||.--.-.+--.|.+.|+.-- ...+.++||+|+.
T Consensus 192 ~ea~lLCFDEfQVTDVADAmiL~rLf~~Lf------------~~GvVlvATSNR~ 234 (467)
T KOG2383|consen 192 EEAILLCFDEFQVTDVADAMILKRLFEHLF------------KNGVVLVATSNRA 234 (467)
T ss_pred hhceeeeechhhhhhHHHHHHHHHHHHHHH------------hCCeEEEEeCCCC
Confidence 356799999998776666555666665421 2345789999984
No 349
>PRK00279 adk adenylate kinase; Reviewed
Probab=94.65 E-value=0.025 Score=55.91 Aligned_cols=31 Identities=42% Similarity=0.649 Sum_probs=26.5
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
.|+++|+||+|||++++.+++..+...+..+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~ 32 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTG 32 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4899999999999999999998877666643
No 350
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.63 E-value=0.023 Score=54.77 Aligned_cols=30 Identities=20% Similarity=0.413 Sum_probs=25.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..+.|+||+|+|||++++.++...+..++.
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 468899999999999999999887655444
No 351
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.62 E-value=0.043 Score=65.62 Aligned_cols=83 Identities=20% Similarity=0.244 Sum_probs=47.1
Q ss_pred ccccccCCCchHHHHHHHHHHhc---CCceEEeCCCccc-------CCceEEEeecCchhH--hhhhhhhhccCCeeecc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTS-------AGLTVTAVKDGGEWM--LEAGALVLADGGLCCID 416 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~-------~gl~~~~~~~~~~~~--~~~g~l~~a~~gvl~iD 416 (663)
-+++.|.||||||++++.+.... +..++........ .|+....+ ..+. ...|...+....+++||
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e~tGi~a~TI---~sll~~~~~~~~~l~~~~vlIVD 440 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEGGSGIASRTI---ASLEHGWGQGRDLLTSRDVLVID 440 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhhccCcchhhH---HHHHhhhcccccccccCcEEEEE
Confidence 36799999999999998877653 3334332221111 11110000 0010 01122223456799999
Q ss_pred cccccChhhHHhHHHHHH
Q 006051 417 EFDSMREHDRATIHEAME 434 (663)
Q Consensus 417 Eid~l~~~~~~~L~~~me 434 (663)
|+.+++......|+...+
T Consensus 441 EASMv~~~~m~~LL~~a~ 458 (988)
T PRK13889 441 EAGMVGTRQLERVLSHAA 458 (988)
T ss_pred CcccCCHHHHHHHHHhhh
Confidence 999999887777776544
No 352
>PLN02674 adenylate kinase
Probab=94.58 E-value=0.026 Score=56.60 Aligned_cols=32 Identities=28% Similarity=0.452 Sum_probs=26.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
.+|+|.||||+||+++++.+++..+-..+.+|
T Consensus 32 ~~i~l~G~PGsGKgT~a~~La~~~~~~his~G 63 (244)
T PLN02674 32 KRLILIGPPGSGKGTQSPIIKDEYCLCHLATG 63 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCcEEchh
Confidence 67999999999999999999998766555443
No 353
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.51 E-value=0.046 Score=50.67 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.4
Q ss_pred cccccCCCchHHHHHHHHHHhc
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~ 371 (663)
++++|.||+|||++++.++...
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999876
No 354
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=94.40 E-value=0.041 Score=51.16 Aligned_cols=89 Identities=22% Similarity=0.248 Sum_probs=48.0
Q ss_pred cccccccCCCchHHHHHHHHHHhc---CCceEEeCCCcccCCceEE--EeecC-chhHhhhhhh--hhccCCeeeccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVT--AVKDG-GEWMLEAGAL--VLADGGLCCIDEFD 419 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~~gl~~~--~~~~~-~~~~~~~g~l--~~a~~gvl~iDEid 419 (663)
.-|.|+|.||+|||++|+++.+.+ +..++..+......++... ....+ .++....+.+ .+++.|+++|=-+-
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva~i 82 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVAFI 82 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE--
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEeec
Confidence 458899999999999999999754 3444443211111111110 01111 2222233333 24566766666666
Q ss_pred ccChhhHHhHHHHHHhc
Q 006051 420 SMREHDRATIHEAMEQQ 436 (663)
Q Consensus 420 ~l~~~~~~~L~~~me~~ 436 (663)
.+-.+.+....+.+.+.
T Consensus 83 sp~~~~R~~~R~~~~~~ 99 (156)
T PF01583_consen 83 SPYREDREWARELIPNE 99 (156)
T ss_dssp --SHHHHHHHHHHHHTT
T ss_pred cCchHHHHHHHHhCCcC
Confidence 67777888888887753
No 355
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.36 E-value=0.1 Score=49.17 Aligned_cols=92 Identities=21% Similarity=0.311 Sum_probs=52.5
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcCC--c-eEEeCCCcccC------CceEEEee--cCchhH-hhhhhhhhccCC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNR--S-VITTGLGSTSA------GLTVTAVK--DGGEWM-LEAGALVLADGG 411 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~~--~-~~~~~~~~~~~------gl~~~~~~--~~~~~~-~~~g~l~~a~~g 411 (663)
+.+.-.+.|+|++|+|||+|++.++.+.+. + +...+...... ......+. .+|+.. ..-......+.-
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~ 102 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNAR 102 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCC
Confidence 445578999999999999999999987542 1 21111100000 00011111 112111 111112234778
Q ss_pred eeecccccc-cChhhHHhHHHHHHh
Q 006051 412 LCCIDEFDS-MREHDRATIHEAMEQ 435 (663)
Q Consensus 412 vl~iDEid~-l~~~~~~~L~~~me~ 435 (663)
++++||-.. ++...+..+.+++.+
T Consensus 103 illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 103 LLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred EEEEECCCcCCCHHHHHHHHHHHHH
Confidence 999999864 788888888888764
No 356
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=94.35 E-value=0.036 Score=64.85 Aligned_cols=84 Identities=21% Similarity=0.297 Sum_probs=46.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC-----CceEEeCCCccc-------CCceEEEeecCchhH-hhhhhh------hhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTS-------AGLTVTAVKDGGEWM-LEAGAL------VLA 408 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~-----~~~~~~~~~~~~-------~gl~~~~~~~~~~~~-~~~g~l------~~a 408 (663)
..+++.|+||||||++++++.+.+. ..++........ .|..+..+ ..+. ..++.. ...
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~g~~a~Ti---h~lL~~~~~~~~~~~~~~~~ 415 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVTGLTASTI---HRLLGYGPDTFRHNHLEDPI 415 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhcCCccccH---HHHhhccCCccchhhhhccc
Confidence 3588999999999999999877543 233332211111 01110000 0000 000100 012
Q ss_pred cCCeeecccccccChhhHHhHHHHHH
Q 006051 409 DGGLCCIDEFDSMREHDRATIHEAME 434 (663)
Q Consensus 409 ~~gvl~iDEid~l~~~~~~~L~~~me 434 (663)
...+++|||+.+++......|++++.
T Consensus 416 ~~~llIvDEaSMvd~~~~~~Ll~~~~ 441 (720)
T TIGR01448 416 DCDLLIVDESSMMDTWLALSLLAALP 441 (720)
T ss_pred cCCEEEEeccccCCHHHHHHHHHhCC
Confidence 45799999999999887777776543
No 357
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=94.32 E-value=0.17 Score=51.96 Aligned_cols=88 Identities=15% Similarity=0.165 Sum_probs=47.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCc---eEEeC-CCccc-CCceEE-Ee-e-cCchhHhhhhhhhhccCCeeeccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS---VITTG-LGSTS-AGLTVT-AV-K-DGGEWMLEAGALVLADGGLCCIDEFD 419 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~---~~~~~-~~~~~-~gl~~~-~~-~-~~~~~~~~~g~l~~a~~gvl~iDEid 419 (663)
.++++.|++|+|||++++++....+.. +++.. ..... .+.... .. . +...+..........+..+++++|+-
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiigEiR 207 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIGEIR 207 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEESCE-
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCcccccccC
Confidence 789999999999999999999876554 22221 11110 111111 11 1 11122111222344678899999998
Q ss_pred ccChhhHHhHHHHHHhcee
Q 006051 420 SMREHDRATIHEAMEQQTI 438 (663)
Q Consensus 420 ~l~~~~~~~L~~~me~~~i 438 (663)
.. +.... .+++..|..
T Consensus 208 ~~--e~~~~-~~a~~tGh~ 223 (270)
T PF00437_consen 208 DP--EAAEA-IQAANTGHL 223 (270)
T ss_dssp SC--HHHHH-HHHHHTT-E
T ss_pred CH--hHHHH-HHhhccCCc
Confidence 63 33344 778887763
No 358
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.31 E-value=0.0083 Score=57.97 Aligned_cols=23 Identities=30% Similarity=0.629 Sum_probs=20.7
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
--+.++||+|+|||+|+|++..+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNGL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 56899999999999999999765
No 359
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=94.31 E-value=0.037 Score=54.89 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=16.2
Q ss_pred cccccCCCchHHHHHHHHHHhc
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.++.||||||||+++..+....
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 7889999999998666655443
No 360
>PLN02459 probable adenylate kinase
Probab=94.28 E-value=0.035 Score=56.09 Aligned_cols=32 Identities=31% Similarity=0.513 Sum_probs=26.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
.+++|+||||+||+++++.+++..+...+.+|
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~g 61 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATG 61 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCc
Confidence 57999999999999999999998776655543
No 361
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.24 E-value=0.029 Score=58.12 Aligned_cols=69 Identities=20% Similarity=0.202 Sum_probs=44.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
..+-|+|++++|||++++.++.+.+.+. ++..++- .....+ .+.....++..++|||+....+....
T Consensus 194 ~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~----------~l~~sw~--~T~n~l-e~~a~~~nd~~l~lDE~~~~~~~~~~ 260 (286)
T PF06048_consen 194 FGFHLYGQSSSGKTTALQLAASVWGNPD----------GLIRSWN--STDNGL-ERTAAAHNDLPLVLDELSQADPKDVG 260 (286)
T ss_pred eEEEEEeCCCCCHHHHHHHhhhhCcCch----------hhhhcch--hhHHHH-HHHHHHcCCcceEehhccccchhHHH
Confidence 4566899999999999999998876655 1111110 011111 22334457789999999988776544
Q ss_pred hH
Q 006051 428 TI 429 (663)
Q Consensus 428 ~L 429 (663)
.+
T Consensus 261 ~~ 262 (286)
T PF06048_consen 261 SI 262 (286)
T ss_pred HH
Confidence 33
No 362
>PRK14529 adenylate kinase; Provisional
Probab=94.20 E-value=0.029 Score=55.54 Aligned_cols=30 Identities=23% Similarity=0.359 Sum_probs=25.2
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
+|+|.|+||+|||++++.+++......+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~ 31 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIES 31 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCccc
Confidence 588999999999999999999876655543
No 363
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=94.15 E-value=0.18 Score=53.49 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=34.0
Q ss_pred hhhccCCeeecccc-cccChhhHHhHHHHHHh--ceeeeeccCceeecCCcEEEEEeeCC
Q 006051 405 LVLADGGLCCIDEF-DSMREHDRATIHEAMEQ--QTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 405 l~~a~~gvl~iDEi-d~l~~~~~~~L~~~me~--~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
+.+..+.|+++||- +.+..+..++|-+++.+ |.+.+..........++|.+|..-|.
T Consensus 718 Lal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 718 LALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVENQ 777 (807)
T ss_pred HhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEccC
Confidence 44456779999997 45777778889999875 33322222222222455556555554
No 364
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=94.11 E-value=0.058 Score=48.75 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=23.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
..++|.|+.|+|||+++|.+++.++.
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 56999999999999999999998754
No 365
>PRK14527 adenylate kinase; Provisional
Probab=94.06 E-value=0.036 Score=53.66 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCce
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
.-++++|+||+|||++++.+++..+...
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~ 34 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKK 34 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCC
Confidence 4589999999999999999997665433
No 366
>PRK06547 hypothetical protein; Provisional
Probab=94.05 E-value=0.04 Score=52.42 Aligned_cols=30 Identities=20% Similarity=0.326 Sum_probs=24.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|++.|++|+|||++++.+++..+..++.
T Consensus 16 ~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~ 45 (172)
T PRK06547 16 ITVLIDGRSGSGKTTLAGALAARTGFQLVH 45 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeec
Confidence 568888999999999999999876655543
No 367
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=94.01 E-value=0.061 Score=53.70 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=18.7
Q ss_pred cccccCCCchHHHHHHHHHHh
Q 006051 350 LLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~ 370 (663)
+++.|+||+|||++++.+...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~ 21 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKD 21 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHh
Confidence 467899999999999998877
No 368
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.99 E-value=0.064 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.495 Sum_probs=23.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.+++++||+|+|||++++++....+
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 6799999999999999999998765
No 369
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=93.93 E-value=0.035 Score=53.06 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.3
Q ss_pred ccccccCCCchHHHHHHHHHHhcC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
-++++||||+|||++++.++...+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 378999999999999999998754
No 370
>PRK04040 adenylate kinase; Provisional
Probab=93.93 E-value=0.042 Score=53.11 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..|+++|.||+|||++++.+++..+
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 4589999999999999999998874
No 371
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.92 E-value=0.061 Score=56.84 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.+||++|++|+|||++++++....|.
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 78999999999999999999987764
No 372
>PRK01184 hypothetical protein; Provisional
Probab=93.87 E-value=0.044 Score=52.70 Aligned_cols=28 Identities=36% Similarity=0.545 Sum_probs=21.6
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
-|+|+|+||+|||++++ +++..+.+++.
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~ 30 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVV 30 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEE
Confidence 47899999999999998 55555555554
No 373
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=93.86 E-value=0.04 Score=62.84 Aligned_cols=37 Identities=27% Similarity=0.296 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHh
Q 006051 319 LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 319 ~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+.-|.|+.+++.. .-.++.|+||||||++++.+...
T Consensus 154 ~d~Qk~Av~~a~~~---------------~~~vItGgpGTGKTt~v~~ll~~ 190 (615)
T PRK10875 154 VDWQKVAAAVALTR---------------RISVISGGPGTGKTTTVAKLLAA 190 (615)
T ss_pred CHHHHHHHHHHhcC---------------CeEEEEeCCCCCHHHHHHHHHHH
Confidence 35778888888865 34789999999999988776543
No 374
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=93.83 E-value=0.063 Score=53.98 Aligned_cols=56 Identities=23% Similarity=0.296 Sum_probs=40.2
Q ss_pred hhccccccCchhHHHHH--HHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC
Q 006051 309 LRGICPQVFGLFTVKLA--VALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 309 ~~si~p~i~G~~~~K~a--ill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
....+..+.||+.+++| ++.-++.. +.-....+||.||||||||.||-++++.++.
T Consensus 33 ~~~~~~g~vGQ~~AReAagiivdlik~---------KkmaGravLlaGppgtGKTAlAlaisqELG~ 90 (456)
T KOG1942|consen 33 AVEVAAGFVGQENAREAAGIIVDLIKS---------KKMAGRAVLLAGPPGTGKTALALAISQELGP 90 (456)
T ss_pred eeecccccccchhhhhhhhHHHHHHHh---------hhccCcEEEEecCCCCchhHHHHHHHHHhCC
Confidence 34456678999988875 44444431 1112267999999999999999999997765
No 375
>PRK14700 recombination factor protein RarA; Provisional
Probab=93.82 E-value=0.21 Score=51.10 Aligned_cols=103 Identities=15% Similarity=0.084 Sum_probs=54.6
Q ss_pred EEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHH
Q 006051 454 IIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRR 533 (663)
Q Consensus 454 ~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (663)
.+||||...-. +.+.+||+||+ .+|.+.....++....+.+-+.....
T Consensus 10 ~LIGATTENP~----------f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~--------------------- 57 (300)
T PRK14700 10 ILIGATTENPT----------YYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEV--------------------- 57 (300)
T ss_pred EEEeecCCCcc----------ceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhc---------------------
Confidence 78888844311 46778999999 55666555555554444333221000
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
.......+++++.+.|... ..+..|..-+++.++-..+.-.....+|.+++.+++
T Consensus 58 -----~~~~~~~i~~~al~~ia~~------------a~GDaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~ 112 (300)
T PRK14700 58 -----LAKHKFKIDDGLYNAMHNY------------NEGDCRKILNLLERMFLISTRGDEIYLNKELFDQAV 112 (300)
T ss_pred -----cCCcCCCcCHHHHHHHHHh------------cCCHHHHHHHHHHHHHhhccccCCCccCHHHHHHHH
Confidence 0011235778888777765 223456666666654322211111136777777655
No 376
>PRK08233 hypothetical protein; Provisional
Probab=93.75 E-value=0.039 Score=52.69 Aligned_cols=26 Identities=12% Similarity=0.165 Sum_probs=22.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.-|.+.|+||+|||++++.+++.++.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~ 29 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKN 29 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 34778899999999999999987753
No 377
>PF13479 AAA_24: AAA domain
Probab=93.68 E-value=0.035 Score=54.85 Aligned_cols=27 Identities=22% Similarity=0.501 Sum_probs=22.6
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
+..+|++|+||+|||+++..+ +++++.
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~~----~k~l~i 29 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAASL----PKPLFI 29 (213)
T ss_pred ceEEEEECCCCCCHHHHHHhC----CCeEEE
Confidence 378999999999999998877 666654
No 378
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.67 E-value=0.24 Score=52.78 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=21.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
-.+|+.||+|+|||++++++.+..+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4699999999999999999887544
No 379
>PTZ00301 uridine kinase; Provisional
Probab=93.63 E-value=0.14 Score=50.40 Aligned_cols=23 Identities=22% Similarity=0.242 Sum_probs=19.5
Q ss_pred ccccccCCCchHHHHHHHHHHhc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
=|.+.|+||+|||++|+.+++..
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 36789999999999999987643
No 380
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=93.62 E-value=0.049 Score=51.23 Aligned_cols=21 Identities=29% Similarity=0.607 Sum_probs=18.0
Q ss_pred cccccCCCchHHHHHHHHHHh
Q 006051 350 LLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~ 370 (663)
|.|+|.||||||+|++.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999987
No 381
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=93.55 E-value=0.044 Score=48.21 Aligned_cols=24 Identities=21% Similarity=0.470 Sum_probs=20.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+|+++|++|+|||+|++.+.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 378999999999999999987543
No 382
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.54 E-value=0.088 Score=51.31 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.6
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-+.|+|.+|+|||++++.++..+
T Consensus 25 ~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 25 VVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999864
No 383
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.49 E-value=0.053 Score=41.87 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.4
Q ss_pred ccccccCCCchHHHHHHHHHHhc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..+|+|+.|+|||+++.++.-++
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999987653
No 384
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=93.48 E-value=0.14 Score=48.23 Aligned_cols=87 Identities=25% Similarity=0.267 Sum_probs=46.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCce----EE----eCCCcccCC----ceEEEeecCchhH--hhhhhhhhc---cC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV----IT----TGLGSTSAG----LTVTAVKDGGEWM--LEAGALVLA---DG 410 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~----~~----~~~~~~~~g----l~~~~~~~~~~~~--~~~g~l~~a---~~ 410 (663)
...+++||.|+|||.+++++.-...... .. .+....... .+...+.. |+.. .-+-++..+ ..
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~lS~-G~~~~~~la~~L~~~~~~~~ 100 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAAVSAELIFTRLQLSG-GEKELSALALILALASLKPR 100 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCcceeeEEEEehheeeccc-cHHHHHHHHHHHHhcCCCCC
Confidence 4789999999999999999764321110 00 010000000 00000111 2211 112233332 56
Q ss_pred Ceeecccccc-cChhhHHhHHHHHHh
Q 006051 411 GLCCIDEFDS-MREHDRATIHEAMEQ 435 (663)
Q Consensus 411 gvl~iDEid~-l~~~~~~~L~~~me~ 435 (663)
.++++||... +++..+..+.+++.+
T Consensus 101 ~llllDEp~~gld~~~~~~l~~~l~~ 126 (162)
T cd03227 101 PLYILDEIDRGLDPRDGQALAEAILE 126 (162)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence 8999999977 677777777776654
No 385
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.44 E-value=0.042 Score=54.52 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
-=+.++||+|||||+|+|.+|.+..
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~~ 54 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLEK 54 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4588999999999999999998754
No 386
>PRK05541 adenylylsulfate kinase; Provisional
Probab=93.44 E-value=0.049 Score=51.96 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=23.4
Q ss_pred cccccccccCCCchHHHHHHHHHHhcC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.+..|+|+|+||+|||++++.+++.+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346899999999999999999988654
No 387
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.42 E-value=0.48 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.6
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+..++|+||+|+|||+.+..+|..
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~ 197 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAI 197 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999998877764
No 388
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=93.41 E-value=0.051 Score=51.32 Aligned_cols=28 Identities=29% Similarity=0.520 Sum_probs=24.8
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
|.+.|++|+|||++++.+++.++.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999988776655
No 389
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=93.40 E-value=0.07 Score=48.71 Aligned_cols=25 Identities=32% Similarity=0.453 Sum_probs=21.9
Q ss_pred cccccCCCchHHHHHHHHHHhcCCc
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRS 374 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~ 374 (663)
+.|+||+|+|||++++.+++..+..
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999986654
No 390
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=93.37 E-value=0.045 Score=50.76 Aligned_cols=26 Identities=35% Similarity=0.432 Sum_probs=21.3
Q ss_pred cccCCCchHHHHHHHHHHhcCCceEE
Q 006051 352 LVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 352 L~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
++||||+||+++++.+++..+-..+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 57999999999999999976544443
No 391
>PRK04182 cytidylate kinase; Provisional
Probab=93.36 E-value=0.061 Score=51.24 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=25.5
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.|++.|.||+|||++++.+++.++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999988776665
No 392
>COG3910 Predicted ATPase [General function prediction only]
Probab=93.31 E-value=0.28 Score=46.52 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.4
Q ss_pred cccccCCCchHHHHHHHHHHhc
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-.++|+.|+|||+|+.++|...
T Consensus 40 T~i~GENGsGKSTLLEaiA~~~ 61 (233)
T COG3910 40 TFITGENGSGKSTLLEAIAAGM 61 (233)
T ss_pred EEEEcCCCccHHHHHHHHHhhc
Confidence 5679999999999999999754
No 393
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=93.31 E-value=0.1 Score=54.64 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=30.6
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
++....+|.|+|.||+|||++++.+++.++.+++.
T Consensus 129 ~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 129 RAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 34556789999999999999999999999888875
No 394
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.23 E-value=0.063 Score=56.00 Aligned_cols=24 Identities=38% Similarity=0.513 Sum_probs=21.7
Q ss_pred ccccccCCCchHHHHHHHHHHhcC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
-++++|+||+|||++++.+++..+
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~ 27 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP 27 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC
Confidence 478899999999999999999874
No 395
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=93.22 E-value=0.14 Score=56.12 Aligned_cols=30 Identities=37% Similarity=0.441 Sum_probs=25.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.-+||+||+|+|||+.++.+++..+..+..
T Consensus 111 ~iLLltGPsGcGKSTtvkvLskelg~~~~E 140 (634)
T KOG1970|consen 111 RILLLTGPSGCGKSTTVKVLSKELGYQLIE 140 (634)
T ss_pred eEEEEeCCCCCCchhHHHHHHHhhCceeee
Confidence 458889999999999999999987765543
No 396
>PLN02165 adenylate isopentenyltransferase
Probab=93.20 E-value=0.07 Score=55.77 Aligned_cols=31 Identities=23% Similarity=0.349 Sum_probs=26.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
..+.|+||+|+|||+|+..+++..+..++..
T Consensus 44 ~iivIiGPTGSGKStLA~~LA~~l~~eIIsa 74 (334)
T PLN02165 44 KVVVIMGATGSGKSRLSVDLATRFPSEIINS 74 (334)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHcCCceecC
Confidence 4689999999999999999999987665554
No 397
>PLN02199 shikimate kinase
Probab=93.19 E-value=0.068 Score=54.81 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=28.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
.+|+|+|.+|+|||++++.+++.++.+++.++
T Consensus 103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 68999999999999999999999888887643
No 398
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.19 E-value=0.045 Score=52.43 Aligned_cols=86 Identities=27% Similarity=0.322 Sum_probs=45.4
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEEe-CCCc-ccCCceE--E--EeecC-chhHhhh--hhhhhc-cCCeeeccccc
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITT-GLGS-TSAGLTV--T--AVKDG-GEWMLEA--GALVLA-DGGLCCIDEFD 419 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~~-~~~~-~~~gl~~--~--~~~~~-~~~~~~~--g~l~~a-~~gvl~iDEid 419 (663)
|+|.|+||+|||++|+-+++.+......+ ..+. ...++.- + ..+.. .+...+. -.+..| ++-+++.|..+
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalkn~~VIvDdtN 83 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALKNYLVIVDDTN 83 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhcceEEEEeccc
Confidence 78899999999999999998764322211 1111 0011100 0 00000 1111110 111111 46788899998
Q ss_pred ccChhhHHhHHHHHHh
Q 006051 420 SMREHDRATIHEAMEQ 435 (663)
Q Consensus 420 ~l~~~~~~~L~~~me~ 435 (663)
..+.-.+....++.+.
T Consensus 84 YyksmRrqL~ceak~~ 99 (261)
T COG4088 84 YYKSMRRQLACEAKER 99 (261)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8877666666666554
No 399
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=93.13 E-value=0.07 Score=51.93 Aligned_cols=30 Identities=20% Similarity=0.392 Sum_probs=24.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.-+++.|.||+|||++++.++...+...+.
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~~~ 33 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDIVL 33 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 468999999999999999999886654433
No 400
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=93.12 E-value=0.048 Score=59.89 Aligned_cols=29 Identities=31% Similarity=0.518 Sum_probs=25.7
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+....|+|++||+|||||.|+|.++.+.|
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp 486 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWP 486 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccc
Confidence 44557999999999999999999999866
No 401
>PRK13764 ATPase; Provisional
Probab=93.11 E-value=0.088 Score=59.60 Aligned_cols=72 Identities=26% Similarity=0.300 Sum_probs=41.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC---ceEEeC-CCcc--cCCceEEEeecCchhHhhhhhhhhccCCeeecccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTG-LGST--SAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDS 420 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~-~~~~--~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~ 420 (663)
.++|++|+||+|||+++++++...+. .+.+.. .... ....+... ...+.....+..+.+.++-++++||+-.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El~~~~~i~q~~-~~~~~~~~~~~~lLR~rPD~IivGEiRd 335 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDLQVPPEITQYS-KLEGSMEETADILLLVRPDYTIYDEMRK 335 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccccCCCcceEEe-eccccHHHHHHHHHhhCCCEEEECCCCC
Confidence 56999999999999999999986552 222221 0000 01111111 1112222223344566889999999875
No 402
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.05 E-value=0.069 Score=54.55 Aligned_cols=32 Identities=31% Similarity=0.503 Sum_probs=27.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
.|.||+|.+|+||.+++|.++.+....++...
T Consensus 32 Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~ 63 (268)
T PF12780_consen 32 GHALLVGVGGSGRQSLARLAAFICGYEVFQIE 63 (268)
T ss_dssp EEEEEECTTTSCHHHHHHHHHHHTTEEEE-TT
T ss_pred CCeEEecCCCccHHHHHHHHHHHhccceEEEE
Confidence 68999999999999999999999888777654
No 403
>COG1485 Predicted ATPase [General function prediction only]
Probab=93.02 E-value=0.054 Score=56.24 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=53.1
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCce-EEeCCCc----ccCCceEEEeecCchhHhhhhhh-hhccCCeeecccccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSV-ITTGLGS----TSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDS 420 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~-~~~~~~~----~~~gl~~~~~~~~~~~~~~~g~l-~~a~~gvl~iDEid~ 420 (663)
...+.|.|+-|.|||+|+....+.+|..- ....... ....+. .+.+... .+.+-+. ..++--|+|+|||.-
T Consensus 65 ~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~--~l~g~~d-pl~~iA~~~~~~~~vLCfDEF~V 141 (367)
T COG1485 65 VRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLH--TLQGQTD-PLPPIADELAAETRVLCFDEFEV 141 (367)
T ss_pred CceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHH--HHcCCCC-ccHHHHHHHHhcCCEEEeeeeee
Confidence 35799999999999999998888776422 1100000 000000 0000000 0111111 134567999999987
Q ss_pred cChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 421 MREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 421 l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
-...+--.|.+.|+.- +...++++||+|..
T Consensus 142 tDI~DAMiL~rL~~~L------------f~~GV~lvaTSN~~ 171 (367)
T COG1485 142 TDIADAMILGRLLEAL------------FARGVVLVATSNTA 171 (367)
T ss_pred cChHHHHHHHHHHHHH------------HHCCcEEEEeCCCC
Confidence 6555433333333321 02234799999974
No 404
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=93.01 E-value=0.052 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=22.1
Q ss_pred ccccccCCCchHHHHHHHHHHhcCC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
-++|+||+|+|||++++.+++..+.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4789999999999999999987654
No 405
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.93 E-value=0.1 Score=55.29 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=23.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.|+|+.|++|+|||++++++....+.
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~ 188 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPP 188 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCC
Confidence 78999999999999999999987654
No 406
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.87 E-value=0.07 Score=52.20 Aligned_cols=25 Identities=28% Similarity=0.401 Sum_probs=23.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+||+|+|||+|++.+++..+
T Consensus 6 ~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 6 LLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5689999999999999999999876
No 407
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=92.75 E-value=0.17 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=18.8
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..|||+||+|+|||.|.-.+..-
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHS
T ss_pred ceEEEEcCCCCCHHHHHHHHhcC
Confidence 57999999999999998888764
No 408
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.69 E-value=0.062 Score=54.45 Aligned_cols=23 Identities=48% Similarity=0.634 Sum_probs=20.7
Q ss_pred cccccCCCchHHHHHHHHHHhcC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
|+|+|.||+|||++|+.+++.+.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998653
No 409
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=92.66 E-value=0.087 Score=50.34 Aligned_cols=27 Identities=30% Similarity=0.337 Sum_probs=23.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~ 374 (663)
..+.++|++|+|||++++.++.+....
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~ 30 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAK 30 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 357899999999999999999987653
No 410
>PRK08356 hypothetical protein; Provisional
Probab=92.60 E-value=0.1 Score=50.78 Aligned_cols=22 Identities=27% Similarity=0.363 Sum_probs=19.7
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..++|+||||+|||++++.+.+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4588999999999999999965
No 411
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=92.58 E-value=0.1 Score=49.52 Aligned_cols=29 Identities=31% Similarity=0.410 Sum_probs=24.2
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.+|++|+||+|||++|..++...+.+++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~ 31 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLY 31 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEe
Confidence 58999999999999999999876654443
No 412
>PRK13808 adenylate kinase; Provisional
Probab=92.55 E-value=0.088 Score=55.20 Aligned_cols=30 Identities=27% Similarity=0.421 Sum_probs=25.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
+|+|+||||+|||++++.+++..+...+.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 589999999999999999999876655543
No 413
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=92.49 E-value=0.06 Score=56.46 Aligned_cols=24 Identities=38% Similarity=0.679 Sum_probs=21.3
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
--+.|+||+|||||+++|.+|.+-
T Consensus 30 ef~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458889999999999999999864
No 414
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=92.43 E-value=0.15 Score=54.84 Aligned_cols=43 Identities=21% Similarity=0.282 Sum_probs=31.4
Q ss_pred CCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
.-++++||.|.+....+..|+++.|=-. ..+.++.+|+-+|.-
T Consensus 257 ~~llVlDEmD~L~tr~~~vLy~lFewp~----------lp~sr~iLiGiANsl 299 (529)
T KOG2227|consen 257 MLLLVLDEMDHLITRSQTVLYTLFEWPK----------LPNSRIILIGIANSL 299 (529)
T ss_pred eEEEEechhhHHhhcccceeeeehhccc----------CCcceeeeeeehhhh
Confidence 4589999999998777777776655221 135688899999974
No 415
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=92.42 E-value=0.078 Score=52.10 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.++|++|+|||+|++.++...+
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4588999999999999999998865
No 416
>PRK12338 hypothetical protein; Provisional
Probab=92.41 E-value=0.11 Score=54.24 Aligned_cols=30 Identities=23% Similarity=0.215 Sum_probs=25.6
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceE
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~ 376 (663)
+.-|++.|+||+|||++|+.+|+.++...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 467899999999999999999998775443
No 417
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.41 E-value=0.083 Score=51.95 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=23.3
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..-|.+.|++|+|||+|++.+++..+
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 46799999999999999999999863
No 418
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=92.40 E-value=0.078 Score=51.60 Aligned_cols=22 Identities=18% Similarity=0.303 Sum_probs=20.2
Q ss_pred cccccCCCchHHHHHHHHHHhc
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~ 371 (663)
|.|.|++|+|||++++.++.+.
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999986
No 419
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=92.39 E-value=0.23 Score=46.65 Aligned_cols=90 Identities=22% Similarity=0.238 Sum_probs=52.9
Q ss_pred cccccccCCCchHHHHHHHHHHhc---CCceEEeCCCcccCCceEE--EeecC-chhHhhhhhh--hhccCCeeeccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVT--AVKDG-GEWMLEAGAL--VLADGGLCCIDEFD 419 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~~gl~~~--~~~~~-~~~~~~~g~l--~~a~~gvl~iDEid 419 (663)
.-|.|+|.+|+|||++|.++.+.+ +..+|....-..-.||... ..+.. .+.....|.+ .+++.|++.|=-+=
T Consensus 24 ~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~iviva~I 103 (197)
T COG0529 24 AVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGLIVIVAFI 103 (197)
T ss_pred eEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCeEEEEEee
Confidence 679999999999999999999753 3444443222222222211 01111 2222233333 24677877777666
Q ss_pred ccChhhHHhHHHHHHhce
Q 006051 420 SMREHDRATIHEAMEQQT 437 (663)
Q Consensus 420 ~l~~~~~~~L~~~me~~~ 437 (663)
..-.+.+...++.+..+.
T Consensus 104 SP~r~~R~~aR~~~~~~~ 121 (197)
T COG0529 104 SPYREDRQMARELLGEGE 121 (197)
T ss_pred CccHHHHHHHHHHhCcCc
Confidence 666667777777777654
No 420
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=92.36 E-value=0.16 Score=64.20 Aligned_cols=88 Identities=17% Similarity=0.175 Sum_probs=48.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcC-------CceEEeCCCccc------CCceEEEeecC-chh--HhhhhhhhhccCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN-------RSVITTGLGSTS------AGLTVTAVKDG-GEW--MLEAGALVLADGG 411 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~-------~~~~~~~~~~~~------~gl~~~~~~~~-~~~--~~~~g~l~~a~~g 411 (663)
.-+++.|.||||||++++.+..... ..+......... .|+.+..+..- +.+ ....|......+.
T Consensus 985 r~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~e~Gi~A~TI~s~L~~~~~~~~~~~~~~~~~~ 1064 (1747)
T PRK13709 985 RFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQLQQRSGETPDFSNT 1064 (1747)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHHhcCcchhhHHHHhcccccccccccCCCCCCc
Confidence 4688999999999999999877531 123222111100 11111000000 000 0001111122457
Q ss_pred eeecccccccChhhHHhHHHHHHh
Q 006051 412 LCCIDEFDSMREHDRATIHEAMEQ 435 (663)
Q Consensus 412 vl~iDEid~l~~~~~~~L~~~me~ 435 (663)
+++|||..+++......|++..+.
T Consensus 1065 llIVDEaSMv~~~~m~~Ll~~~~~ 1088 (1747)
T PRK13709 1065 LFLLDESSMVGNTDMARAYALIAA 1088 (1747)
T ss_pred EEEEEccccccHHHHHHHHHhhhc
Confidence 999999999999888888877653
No 421
>COG5545 Predicted P-loop ATPase and inactivated derivatives [General function prediction only]
Probab=92.28 E-value=0.13 Score=53.40 Aligned_cols=134 Identities=25% Similarity=0.311 Sum_probs=89.0
Q ss_pred hhccccccCchh---HHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccC
Q 006051 309 LRGICPQVFGLF---TVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA 385 (663)
Q Consensus 309 ~~si~p~i~G~~---~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~ 385 (663)
+.+++|+.+|-. ....+..+.++|.+.+...-|.+. +.-+.|.|+.|+|||+++.- +++..+|+....+.
T Consensus 163 ~~~l~~dyfGa~ds~l~~~~~k~f~VgAVarv~~Pg~K~--Df~l~L~G~Qgs~KsTfl~~---l~G~~wftd~~~~~-- 235 (517)
T COG5545 163 VETLLIDYFGASDSTLARQASKCFMVGAVARVLWPGAKV--DFMLVLEGPQGSHKSTFLSE---LFGTYWFTDTAESP-- 235 (517)
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhCCCCcc--eeEEEEecCCCCCccchHHH---hcCceeeeccccCC--
Confidence 778999999965 345566777777776655444432 35678899999999998654 44566666433221
Q ss_pred CceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeec--cCceeecCCcEEEEEeeCCC
Q 006051 386 GLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAK--AGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 386 gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k--~g~~~~~~~~~~iiaatN~~ 462 (663)
+ +.... ++...--|+=+||++.....+...|.-++.+.+.+... ......++-.|.+++|||..
T Consensus 236 --t------~KD~~-----~~i~~~wive~~Em~s~~K~dvt~lK~fitr~~dsfRaPYgt~~e~y~r~~V~vgTTN~~ 301 (517)
T COG5545 236 --T------GKDFY-----QVIQGCWIVEIGEMDSFGKADVTALKVFITRRTDSFRAPYGTLPESYRRECVFVGTTNDR 301 (517)
T ss_pred --C------cchHH-----HHHhhhheeehhhhhhhcCCCHHHHHHHHHHhhhhhcCcccCChhhcccceEEEeccchH
Confidence 1 11111 11122236778899988888888898888887766532 22344567889999999985
No 422
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.23 E-value=0.39 Score=54.48 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=23.2
Q ss_pred cccccccccccCCCchHHHHHHHHHHh
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+++...+-|+||+|.|||+++..+-++
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rf 517 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRF 517 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 455568899999999999999998875
No 423
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=92.11 E-value=0.085 Score=50.60 Aligned_cols=20 Identities=45% Similarity=0.599 Sum_probs=17.1
Q ss_pred cccccCCCchHHHHHHHHHH
Q 006051 350 LLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~ 369 (663)
+|+.||||||||.++..++.
T Consensus 2 ~li~G~~G~GKT~l~~~~~~ 21 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLY 21 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 68999999999998876654
No 424
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=92.09 E-value=0.39 Score=47.36 Aligned_cols=22 Identities=36% Similarity=0.530 Sum_probs=19.7
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.-++|+||.|+|||+++|.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 4588999999999999999984
No 425
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.06 E-value=1 Score=46.10 Aligned_cols=88 Identities=19% Similarity=0.228 Sum_probs=46.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC---ceEEeCCC-cc-cCCceEEEeecC-c-hhHhhhhhhhhccCCeeecccccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLG-ST-SAGLTVTAVKDG-G-EWMLEAGALVLADGGLCCIDEFDS 420 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~-~~-~~gl~~~~~~~~-~-~~~~~~g~l~~a~~gvl~iDEid~ 420 (663)
-.+++.|++|+|||++++++....+. .+++.... .. ..+.....+... + .+..-.-.....+.-+++++|+..
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR~ 160 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIRD 160 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCCC
Confidence 35999999999999999988654432 23333211 10 112221122211 1 111111112345788999999865
Q ss_pred cChhhHHhHHHHHHhce
Q 006051 421 MREHDRATIHEAMEQQT 437 (663)
Q Consensus 421 l~~~~~~~L~~~me~~~ 437 (663)
-. ....+.++...|.
T Consensus 161 ~e--~a~~~~~aa~tGh 175 (264)
T cd01129 161 AE--TAEIAVQAALTGH 175 (264)
T ss_pred HH--HHHHHHHHHHcCC
Confidence 32 2234556666554
No 426
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=92.04 E-value=0.13 Score=49.29 Aligned_cols=29 Identities=31% Similarity=0.400 Sum_probs=23.7
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
|.++|.||+|||++++.+++ .+.+++..+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 67899999999999999998 565565543
No 427
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=91.96 E-value=0.13 Score=48.52 Aligned_cols=24 Identities=25% Similarity=0.344 Sum_probs=20.5
Q ss_pred ccCCCchHHHHHHHHHHhcCCceE
Q 006051 353 VGDPGTGKSQFLKFAAKLSNRSVI 376 (663)
Q Consensus 353 ~G~pGtGKs~lar~ia~~~~~~~~ 376 (663)
+|+||+|||++++.++...+..++
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~ 24 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFL 24 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEE
Confidence 599999999999999998865444
No 428
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=91.94 E-value=0.091 Score=51.01 Aligned_cols=24 Identities=29% Similarity=0.524 Sum_probs=21.3
Q ss_pred cccccCCCchHHHHHHHHHHhcCC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
|.+.|+||+|||++|+.++..+..
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCc
Confidence 568899999999999999998764
No 429
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.94 E-value=0.094 Score=45.42 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=19.1
Q ss_pred cccccccCCCchHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia 368 (663)
..++|+||+|+|||+|++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 568999999999999999975
No 430
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=91.92 E-value=0.12 Score=51.05 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=26.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
..|-+.||+|+|||++++.+++..+..++..|
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g 34 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSG 34 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCc
Confidence 35788999999999999999988776666543
No 431
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=91.92 E-value=0.07 Score=48.35 Aligned_cols=27 Identities=37% Similarity=0.484 Sum_probs=22.7
Q ss_pred ccccccccccCCCchHHHHHHHHHHhc
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...-.+.++|++|+|||+|++.++...
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEccCCCccccceeeecccc
Confidence 334679999999999999999998754
No 432
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=91.88 E-value=0.18 Score=52.61 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.++|++|++|+|||++++++.+..+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999998753
No 433
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=91.88 E-value=0.09 Score=46.19 Aligned_cols=21 Identities=24% Similarity=0.556 Sum_probs=19.3
Q ss_pred ccccccCCCchHHHHHHHHHH
Q 006051 349 HLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~ 369 (663)
.|+++|+||+|||+|.+++..
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHhc
Confidence 378999999999999999986
No 434
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=91.86 E-value=0.16 Score=53.19 Aligned_cols=26 Identities=27% Similarity=0.551 Sum_probs=23.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.+++++|++|+|||++++++....+.
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~ 170 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPK 170 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCc
Confidence 78999999999999999999987653
No 435
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=91.83 E-value=0.35 Score=56.25 Aligned_cols=27 Identities=33% Similarity=0.506 Sum_probs=22.6
Q ss_pred ccccccccccCCCchHHHHHHHHHHhc
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+.--|-++|++|+|||+|+|.+..+.
T Consensus 497 ~~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 497 PPGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 333459999999999999999999754
No 436
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=91.76 E-value=0.098 Score=52.71 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=23.0
Q ss_pred cccccccccCCCchHHHHHHHHHHhcC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...-+.++||.|+|||+|+|+++++.+
T Consensus 27 ~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 27 KGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 335688999999999999999998654
No 437
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.72 E-value=0.084 Score=55.68 Aligned_cols=22 Identities=32% Similarity=0.647 Sum_probs=19.9
Q ss_pred ccccccCCCchHHHHHHHHHHh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~ 370 (663)
=+.|.||+|||||+++|.||.+
T Consensus 33 f~~lLGPSGcGKTTlLR~IAGf 54 (352)
T COG3842 33 FVTLLGPSGCGKTTLLRMIAGF 54 (352)
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4678999999999999999975
No 438
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=91.71 E-value=0.096 Score=56.91 Aligned_cols=30 Identities=30% Similarity=0.484 Sum_probs=26.3
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcCC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
+.+..|+|+.||.|||||.|.|.++.+.|-
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLWPv 534 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLWPV 534 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccCcc
Confidence 455689999999999999999999998764
No 439
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=91.69 E-value=0.45 Score=45.49 Aligned_cols=28 Identities=14% Similarity=0.420 Sum_probs=21.4
Q ss_pred ccCCeeecccccc-cChhhHHhHHHHHHh
Q 006051 408 ADGGLCCIDEFDS-MREHDRATIHEAMEQ 435 (663)
Q Consensus 408 a~~gvl~iDEid~-l~~~~~~~L~~~me~ 435 (663)
.+..++++||.+. ++...+..+.+.+.+
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~ 143 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKE 143 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence 4678999999986 677777777777764
No 440
>PRK00889 adenylylsulfate kinase; Provisional
Probab=91.69 E-value=0.1 Score=49.70 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=21.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+|+||+|||++++.+++.+.
T Consensus 5 ~~i~~~G~~GsGKST~a~~la~~l~ 29 (175)
T PRK00889 5 VTVWFTGLSGAGKTTIARALAEKLR 29 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998753
No 441
>PRK14737 gmk guanylate kinase; Provisional
Probab=91.63 E-value=0.13 Score=49.57 Aligned_cols=26 Identities=15% Similarity=0.229 Sum_probs=22.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.-+.|+||+|+|||+|++.+.+..|.
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~ 30 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPD 30 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCc
Confidence 56899999999999999999886654
No 442
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=91.62 E-value=0.48 Score=50.76 Aligned_cols=87 Identities=15% Similarity=0.100 Sum_probs=45.9
Q ss_pred ccccccCCCchHHHHHHHHHHhcC-----CceEEeCCC-ccc-CC---ceEEEeecCc----hhHhhhhhhhhccCCeee
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLG-STS-AG---LTVTAVKDGG----EWMLEAGALVLADGGLCC 414 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~-----~~~~~~~~~-~~~-~g---l~~~~~~~~~----~~~~~~g~l~~a~~gvl~ 414 (663)
.+|++||+|+|||++++++.+..+ ..+++.... ... .+ +......+.+ .+..-.-.....++.+++
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~~~~~~l~~aLR~~PD~I~ 230 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVDSFANGIRLALRRAPKIIG 230 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCccCHHHHHHHhhccCCCEEe
Confidence 589999999999999999876542 234443211 000 00 0000001101 111001112235889999
Q ss_pred cccccccChhhHHhHHHHHHhce
Q 006051 415 IDEFDSMREHDRATIHEAMEQQT 437 (663)
Q Consensus 415 iDEid~l~~~~~~~L~~~me~~~ 437 (663)
++|+-.. +.....+++++.|.
T Consensus 231 vGEiRd~--et~~~al~aa~TGH 251 (372)
T TIGR02525 231 VGEIRDL--ETFQAAVLAGQSGH 251 (372)
T ss_pred eCCCCCH--HHHHHHHHHHhcCC
Confidence 9998743 33344567777664
No 443
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=91.62 E-value=0.29 Score=56.25 Aligned_cols=30 Identities=23% Similarity=0.396 Sum_probs=25.3
Q ss_pred ccccccccccccCCCchHHHHHHHHHHhcC
Q 006051 343 KVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 343 ~~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.+++.-.+.++|++|+|||+|++.+.+..|
T Consensus 372 ~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p 401 (588)
T PRK11174 372 TLPAGQRIALVGPSGAGKTSLLNALLGFLP 401 (588)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345557899999999999999999998763
No 444
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=91.60 E-value=0.2 Score=52.59 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=22.1
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.|+|+.|++|+|||++++++....
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998765
No 445
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=91.58 E-value=0.14 Score=48.71 Aligned_cols=31 Identities=16% Similarity=0.219 Sum_probs=26.0
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
-|+|-|+|.+|||++|+++...++.+++..+
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~ 33 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLS 33 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEe
Confidence 3789999999999999999999999987754
No 446
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=91.56 E-value=0.32 Score=47.47 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=21.3
Q ss_pred ccccccccccCCCchHHHHHHHHHH
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+.--++|+||.|+|||++++.++.
T Consensus 27 ~~~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 27 GSGRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred cCCeEEEEECCCCCccHHHHHHHHH
Confidence 3335689999999999999999984
No 447
>PRK12678 transcription termination factor Rho; Provisional
Probab=91.48 E-value=0.13 Score=57.05 Aligned_cols=24 Identities=29% Similarity=0.383 Sum_probs=21.1
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-..||+||||+|||+|++.|++..
T Consensus 417 QR~LIvgpp~aGKTtLL~~IAn~i 440 (672)
T PRK12678 417 QRGLIVSPPKAGKTTILQNIANAI 440 (672)
T ss_pred CEeEEeCCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999743
No 448
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=91.39 E-value=0.38 Score=47.73 Aligned_cols=112 Identities=10% Similarity=0.067 Sum_probs=66.6
Q ss_pred cccccccCCC-chHHHHHHHHHHhcCCceEEeCCCcccCCceE-EEe----ecC---chhHhh--hhhhh----hccCCe
Q 006051 348 SHLLLVGDPG-TGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV-TAV----KDG---GEWMLE--AGALV----LADGGL 412 (663)
Q Consensus 348 ~~iLL~G~pG-tGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~-~~~----~~~---~~~~~~--~g~l~----~a~~gv 412 (663)
+..|+.|+.+ +||.-++..+++......... +.. ..+.. ... +.+ +.-..+ ...+. .+..-|
T Consensus 16 hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~--~~H-PD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KV 92 (263)
T PRK06581 16 NSWLIEAENIEQALKDLEKFIYIKLFKNSIPL--ENN-PDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKV 92 (263)
T ss_pred heeeEeCCChhhHHHHHHHHHHHHHhccCccc--CCC-CCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEE
Confidence 5689999998 999999999887653211111 110 11100 000 000 000000 11111 234569
Q ss_pred eecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEE-EEeeCCCCCCCCCCccccccCCChhhhhhhhhh
Q 006051 413 CCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTII-FGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIV 488 (663)
Q Consensus 413 l~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i-iaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli 488 (663)
++|+++++|.....++|+..+|+- |..+.+ +.|.|+. .+.+.++||+-.+
T Consensus 93 iII~~ae~mt~~AANALLKtLEEP-------------P~~t~fILit~~~~-------------~LLpTIrSRCq~i 143 (263)
T PRK06581 93 AIIYSAELMNLNAANSCLKILEDA-------------PKNSYIFLITSRAA-------------SIISTIRSRCFKI 143 (263)
T ss_pred EEEechHHhCHHHHHHHHHhhcCC-------------CCCeEEEEEeCChh-------------hCchhHhhceEEE
Confidence 999999999999999999999974 334444 4455654 6778999999543
No 449
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=91.33 E-value=0.15 Score=50.34 Aligned_cols=25 Identities=36% Similarity=0.526 Sum_probs=22.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.+++++||.|+|||+|++.+.+...
T Consensus 21 ~~~~l~G~rg~GKTsLl~~~~~~~~ 45 (234)
T PF01637_consen 21 QHILLYGPRGSGKTSLLKEFINELK 45 (234)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHCT
T ss_pred cEEEEEcCCcCCHHHHHHHHHHHhh
Confidence 6899999999999999999998763
No 450
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.31 E-value=0.21 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.546 Sum_probs=21.4
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+++++|++|+|||++++++...
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~ 171 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINE 171 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999999875
No 451
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=91.29 E-value=0.11 Score=47.40 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.7
Q ss_pred ccccccCCCchHHHHHHHHHHh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.|+|+|+.|+|||+|++++...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4899999999999999998763
No 452
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=91.29 E-value=0.16 Score=49.43 Aligned_cols=30 Identities=20% Similarity=0.321 Sum_probs=25.3
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.|.++|++|+|||++++.+++..+.+++..
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~~ 32 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILDA 32 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEeeC
Confidence 478999999999999999998766666653
No 453
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.27 E-value=0.12 Score=50.02 Aligned_cols=24 Identities=29% Similarity=0.555 Sum_probs=20.3
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-.-|+||+|||||+++|.+-++.
T Consensus 34 ~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 34 KVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred ceEEEECCCCcCHHHHHHHHHhhc
Confidence 345688999999999999998764
No 454
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=91.27 E-value=0.13 Score=47.42 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.5
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+||.||+|+|||+++..+.+.
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 78999999999999999877764
No 455
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.24 E-value=0.14 Score=50.24 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=19.7
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..-++++||||+|||+++..++.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~ 34 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAV 34 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999887764
No 456
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=91.21 E-value=0.088 Score=51.73 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..++.|+|++|+|||+|++.+.+...
T Consensus 22 ~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 22 LVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 47889999999999999999887644
No 457
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.19 E-value=0.12 Score=51.18 Aligned_cols=28 Identities=29% Similarity=0.508 Sum_probs=23.6
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcC
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...-.+.|+||+|+|||+|++.++.+.+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 3446789999999999999999997653
No 458
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.15 E-value=0.12 Score=51.71 Aligned_cols=29 Identities=24% Similarity=0.426 Sum_probs=24.6
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+...-.+.|+||+|+|||+|++.++.+.+
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 28 VPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 44457899999999999999999998754
No 459
>PRK06851 hypothetical protein; Provisional
Probab=91.14 E-value=0.31 Score=51.90 Aligned_cols=24 Identities=50% Similarity=0.708 Sum_probs=21.5
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-++|.|+||||||++++.+++.+
T Consensus 215 ~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 215 NRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHH
Confidence 458999999999999999998865
No 460
>KOG3595 consensus Dyneins, heavy chain [Cytoskeleton]
Probab=91.13 E-value=0.33 Score=61.10 Aligned_cols=151 Identities=21% Similarity=0.196 Sum_probs=81.6
Q ss_pred cccccccCCCchHHHHHHHHHHhc-CCceEEeCCCc-ccCCceEEEeecCchhHhhhhhhhh--ccCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS-NRSVITTGLGS-TSAGLTVTAVKDGGEWMLEAGALVL--ADGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~-~~~~~~~~~~~-~~~gl~~~~~~~~~~~~~~~g~l~~--a~~gvl~iDEid~l~~ 423 (663)
..++++||+|+|||.++....... ++.++...... +++.++.. .....-....++...- -..-++|+||++.-..
T Consensus 128 k~~~~~g~~g~gk~~~~~~~~~~~~~~~~~~~~fs~~ts~~~~q~-~~~~~~~k~~~~~~~~~~~~~~~~f~ddinmp~~ 206 (1395)
T KOG3595|consen 128 KPVLLVGPTGTGKTVLVLSELRSLQDREVYLLNFSSVTSSELLQE-IIESKLDKRRSGNYGPPLGKKLVLFVDDINMPAL 206 (1395)
T ss_pred CeEEEEcCCCCCeeeehHHHHHhcccchheEEeeeeeccHHHHHH-HHHHHHHHhcccCCCCCCCceeEEEEeccCCchh
Confidence 679999999999999887766543 33323211100 00000000 0000000000111100 1123899999998533
Q ss_pred ------hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC--CCCCCCCccccccCCChhhhhhhhhhhhhcCCC
Q 006051 424 ------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK--GHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTK 495 (663)
Q Consensus 424 ------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~--g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~ 495 (663)
.....+++.+|.+.+.-...+.. ..--++.+++|+||. |+ ..+++.+.+.|..+. + +.+
T Consensus 207 ~~yg~q~~~~~lrq~~e~~g~~~~~~~~~-~~i~~i~~~~a~~~~~~gr----------~~i~~r~~r~f~~~~-~-~~~ 273 (1395)
T KOG3595|consen 207 DKYGDQPPIELLRQMLEHGGFYDRKKSEW-VEIENVQLVGAMNPPGGGR----------NDITERFLRHFLIVS-L-NYP 273 (1395)
T ss_pred hhcCCccHHHHHHHHHHhceeecccccce-eEEeeeEEEeecCCCCCcc----------CcccHHHHHHeeeEe-e-CCC
Confidence 34566888888876644433333 233577899999975 33 346667777774433 3 455
Q ss_pred ChhHHHHHHHHHhhhcC
Q 006051 496 NPEWDAVVSSHILAEGG 512 (663)
Q Consensus 496 ~~~~d~~i~~~il~~~~ 512 (663)
+.+.-..+-.+++..+.
T Consensus 274 ~~~sl~~if~~~~~~~~ 290 (1395)
T KOG3595|consen 274 SQESLTQIFNTILTGHL 290 (1395)
T ss_pred ChhhHHHHHHHHHhccc
Confidence 55666666667766553
No 461
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=91.11 E-value=0.13 Score=48.39 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.3
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+++++|+||+|||++++++.+-
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~ 24 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQN 24 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 57999999999999999998753
No 462
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=91.11 E-value=0.29 Score=49.47 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
-.++++||+|+|||+|++.+++....
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccc
Confidence 57999999999999999999986654
No 463
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=91.10 E-value=0.13 Score=49.00 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=19.8
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+|+|+|+||+|||+|++.+..
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~ 23 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVE 23 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 5699999999999999998875
No 464
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.06 E-value=0.12 Score=50.79 Aligned_cols=29 Identities=34% Similarity=0.520 Sum_probs=23.9
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+.....+.|+|++|+|||+|++.++.+.+
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 33446789999999999999999997643
No 465
>PRK06696 uridine kinase; Validated
Probab=91.05 E-value=0.17 Score=50.26 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=23.0
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..-|.+.|++|+|||++|+.+++.++
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~ 47 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIK 47 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999998763
No 466
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=91.04 E-value=0.18 Score=48.65 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=20.5
Q ss_pred cccccCCCchHHHHHHHHHHhcC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
|.+.|+||+|||++++.+++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~ 24 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILP 24 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 56789999999999999999874
No 467
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=91.04 E-value=0.17 Score=56.32 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=33.8
Q ss_pred hCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 331 IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 331 ~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
+|+++-.++-....++ ..|.+.||+|+|||++++.+++.++..++.
T Consensus 269 ~g~~RLIDN~~~~~~~-~ii~i~G~sgsGKst~a~~la~~l~~~~~d 314 (512)
T PRK13477 269 CGSTRLIDNVFLMKRQ-PIIAIDGPAGAGKSTVTRAVAKKLGLLYLD 314 (512)
T ss_pred eCCeEEEeeeEeccCC-cEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3555555544444444 679999999999999999999988654443
No 468
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.03 E-value=0.12 Score=50.66 Aligned_cols=29 Identities=21% Similarity=0.307 Sum_probs=23.8
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+...-.+.|+||+|+|||+|++.++.+.+
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34446789999999999999999997643
No 469
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=90.99 E-value=0.13 Score=49.06 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=24.5
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
++..-.+.++|++|+|||+|++.++.+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 34446899999999999999999998754
No 470
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=90.99 E-value=0.13 Score=49.92 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=24.1
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+++.-.+.|+|++|+|||+|++.++.+.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34446789999999999999999998654
No 471
>PRK05439 pantothenate kinase; Provisional
Probab=90.95 E-value=0.2 Score=52.18 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.9
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+.-|.+.|+||+|||++++.++.++.
T Consensus 86 ~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 86 PFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46788999999999999999998754
No 472
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.91 E-value=0.14 Score=48.58 Aligned_cols=29 Identities=31% Similarity=0.612 Sum_probs=24.6
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+++...+.|+||+|+|||+|++.++.+.+
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34446789999999999999999998754
No 473
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.91 E-value=0.24 Score=61.79 Aligned_cols=87 Identities=17% Similarity=0.190 Sum_probs=47.1
Q ss_pred cccccccCCCchHHHHHHHHHHhc-------CCceEEeCCCccc------CCceEE----EeecCchhHhhhhhhhhccC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS-------NRSVITTGLGSTS------AGLTVT----AVKDGGEWMLEAGALVLADG 410 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~-------~~~~~~~~~~~~~------~gl~~~----~~~~~~~~~~~~g~l~~a~~ 410 (663)
.-+++.|.||||||++++.+.... +..+......... .|+.+. .+.... .....+.-....+
T Consensus 853 r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~e~Gi~A~TIasfL~~~~-~~~~~~~~~~~~~ 931 (1623)
T PRK14712 853 RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMRSAGVDAQTLASFLHDTQ-LQQRSGETPDFSN 931 (1623)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHHHhCchHhhHHHHhcccc-chhhcccCCCCCC
Confidence 468999999999999988876542 1122222111100 111100 000000 0000111111235
Q ss_pred CeeecccccccChhhHHhHHHHHHh
Q 006051 411 GLCCIDEFDSMREHDRATIHEAMEQ 435 (663)
Q Consensus 411 gvl~iDEid~l~~~~~~~L~~~me~ 435 (663)
.+++|||..+++......|+..++.
T Consensus 932 ~llIVDEASMV~~~~m~~ll~~~~~ 956 (1623)
T PRK14712 932 TLFLLDESSMVGNTDMARAYALIAA 956 (1623)
T ss_pred cEEEEEccccccHHHHHHHHHhhhh
Confidence 7999999999999888888887764
No 474
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=90.91 E-value=0.13 Score=50.56 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=23.2
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+... .+.|+||+|+|||+|++.++.+.+
T Consensus 23 i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred EcCC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 3444 789999999999999999997643
No 475
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=90.85 E-value=0.18 Score=48.98 Aligned_cols=30 Identities=33% Similarity=0.476 Sum_probs=23.5
Q ss_pred cccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
++++||+|||||.++-.+|+..+.+++...
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~D 33 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISLD 33 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE-
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEec
Confidence 578999999999999999999988887753
No 476
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=90.83 E-value=0.13 Score=48.48 Aligned_cols=24 Identities=33% Similarity=0.477 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...++++|++|+|||+|++.+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcC
Confidence 477999999999999999999864
No 477
>PRK14738 gmk guanylate kinase; Provisional
Probab=90.81 E-value=0.14 Score=50.20 Aligned_cols=25 Identities=20% Similarity=0.264 Sum_probs=21.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-++|+||+|+|||+|++.+.+..+
T Consensus 14 ~~ivi~GpsG~GK~tl~~~L~~~~~ 38 (206)
T PRK14738 14 LLVVISGPSGVGKDAVLARMRERKL 38 (206)
T ss_pred eEEEEECcCCCCHHHHHHHHHhcCC
Confidence 5688899999999999999986543
No 478
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=90.77 E-value=0.14 Score=50.48 Aligned_cols=29 Identities=28% Similarity=0.538 Sum_probs=24.0
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+...-.+.|+|++|+|||+|++.++.+.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 33446799999999999999999997643
No 479
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=90.73 E-value=0.61 Score=44.36 Aligned_cols=24 Identities=29% Similarity=0.512 Sum_probs=21.3
Q ss_pred cccccccccCCCchHHHHHHHHHH
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
....|+++|++|+|||++++.+..
T Consensus 13 ~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 13 KEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp SEEEEEEEESTTSSHHHHHHHHHS
T ss_pred cEEEEEEECCCccchHHHHHHhhh
Confidence 347899999999999999999874
No 480
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=90.69 E-value=0.14 Score=51.58 Aligned_cols=29 Identities=24% Similarity=0.535 Sum_probs=23.9
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+...-.+.|+||+|+|||+|++.++.+.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 34446799999999999999999987653
No 481
>PRK13975 thymidylate kinase; Provisional
Probab=90.68 E-value=0.16 Score=49.28 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcCC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
-|.+.|++|+|||++++.+++.+..
T Consensus 4 ~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 4 FIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4889999999999999999998753
No 482
>PF01057 Parvo_NS1: Parvovirus non-structural protein NS1; InterPro: IPR001257 Parvoviruses are some of the smallest viruses containing linear, non-segmented single-stranded DNA genomes, with an average genome size of 5000 nucleotides. Parvoviruses have been described that infect a wide range of invertebrates and vertebrates and are well known for causing enteric disease in mammals. Genomes contains two large ORFs: NS1 and VP1; other ORFs are found in some sub-types and different gene products can arise from splice variants and the use of different start codons []. This entry represents the helicase domain of the Parvovirus NS1 protein; which is required for viral DNA replication []. This domain contains the ATP/GTP-binding site motif A (P-loop). Parvoviral NS1 also regulates host gene expression through histone acetylation []. ; GO: 0019079 viral genome replication; PDB: 3P0S_A 1S9H_A 1U0J_A.
Probab=90.68 E-value=0.24 Score=50.49 Aligned_cols=95 Identities=14% Similarity=0.093 Sum_probs=54.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhh-hccCCeeecccccccChhhH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-LADGGLCCIDEFDSMREHDR 426 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~-~a~~gvl~iDEid~l~~~~~ 426 (663)
--++++|||+||||.++.+|++..+.--....... .+ .+. ..+..++..||. .+..+..
T Consensus 114 Nti~~~Gp~~tGKt~la~aI~~~~~~~G~vn~~n~--------------nF-----~f~d~~~k~l~~weE~-~~~~~~v 173 (271)
T PF01057_consen 114 NTIWFYGPASTGKTNLADAIANAVPNYGCVNWNNN--------------NF-----PFQDCFNKRLIWWEEP-NMYPDEV 173 (271)
T ss_dssp -EEEEESTTTSSHCHCHHCCCHHSCCEEEEECTTT--------------CC-----CCCCCCCECEEECTCG-GCCTTCH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCcccEeccCCC--------------CC-----ChhhhhhccEEEeccc-CccHHHH
Confidence 45899999999999999999998764211111110 00 011 123346677776 4444455
Q ss_pred HhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 427 ATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 427 ~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
+.+...+.-..+.+.........-.++-+|.++|..
T Consensus 174 e~~K~ilgG~~v~vd~K~k~~~~~~~tPviItsn~d 209 (271)
T PF01057_consen 174 ETAKMILGGTPVRVDVKNKDSEELERTPVIITSNND 209 (271)
T ss_dssp HHHHHCCTTSEEEEEETTTEEEEEEEEEEEEEECCE
T ss_pred HHHHHHhCCCceEeecccCCceEecCCceEEEeccc
Confidence 666666666666664333332222455567788863
No 483
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=90.66 E-value=0.15 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.440 Sum_probs=19.5
Q ss_pred ccccccCCCchHHHHHHHHHHh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.|+++|+||+|||+|+..+...
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988753
No 484
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=90.65 E-value=0.43 Score=46.72 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=19.9
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.-++|+||.|+|||++++.++.+
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 34899999999999999998753
No 485
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=90.60 E-value=0.27 Score=55.89 Aligned_cols=52 Identities=17% Similarity=0.103 Sum_probs=37.3
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.-|..+-...|-+ +|..+.-. +.+.+..|.|+|.||+|||++++.+++.+..
T Consensus 367 ~pP~~f~rpeV~~-iL~~~~~~---------r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~ 418 (568)
T PRK05537 367 EIPEWFSFPEVVA-ELRRTYPP---------RHKQGFTVFFTGLSGAGKSTIAKALMVKLME 418 (568)
T ss_pred CCChhhcHHHHHH-HHHHHhcc---------ccCCCeEEEEECCCCChHHHHHHHHHHHhhh
Confidence 3566676666655 55555432 2334468999999999999999999987653
No 486
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=90.59 E-value=0.15 Score=49.90 Aligned_cols=28 Identities=25% Similarity=0.503 Sum_probs=23.5
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcC
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...-.+.|+||+|+|||+|++.++.+.+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3446799999999999999999997643
No 487
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=90.56 E-value=0.67 Score=43.19 Aligned_cols=73 Identities=16% Similarity=0.177 Sum_probs=45.2
Q ss_pred ccCCCchHHHHHHHHHHhcC-CceEEeCCCcccCCceEEEeecCchhHhhh--hhhhhccCCeeecccccccChhhHHhH
Q 006051 353 VGDPGTGKSQFLKFAAKLSN-RSVITTGLGSTSAGLTVTAVKDGGEWMLEA--GALVLADGGLCCIDEFDSMREHDRATI 429 (663)
Q Consensus 353 ~G~pGtGKs~lar~ia~~~~-~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~--g~l~~a~~gvl~iDEid~l~~~~~~~L 429 (663)
++.+|||||+++.+++++.| .+.+-... ++. + .+....+. ..+...+.-+++.|-=+.+.. .|..|
T Consensus 5 IAtiGCGKTTva~aL~~LFg~wgHvQnDn------I~~---k-~~~~f~~~~l~~L~~~~~~vViaDRNNh~~r-eR~ql 73 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGEWGHVQNDN------ITG---K-RKPKFIKAVLELLAKDTHPVVIADRNNHQKR-ERKQL 73 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCCCCccccCC------CCC---C-CHHHHHHHHHHHHhhCCCCEEEEeCCCchHH-HHHHH
Confidence 68899999999999999998 44333221 111 0 11111221 222225677999997666655 56778
Q ss_pred HHHHHhc
Q 006051 430 HEAMEQQ 436 (663)
Q Consensus 430 ~~~me~~ 436 (663)
.+.+++.
T Consensus 74 ~~~~~~~ 80 (168)
T PF08303_consen 74 FEDVSQL 80 (168)
T ss_pred HHHHHHh
Confidence 8877764
No 488
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=90.54 E-value=0.15 Score=46.38 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=20.3
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+|+++|++|+|||+|+..+...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~ 24 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGN 24 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999888753
No 489
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=90.54 E-value=0.21 Score=47.98 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=24.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCce
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
..++|+||+|+||++|++.+.+..|..+
T Consensus 3 r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 3 RPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 5689999999999999999998877533
No 490
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=90.52 E-value=0.96 Score=42.88 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=18.8
Q ss_pred cccccccCCCchHHH-HHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQ-FLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~-lar~ia~~~ 371 (663)
.++++.|++|+|||. ++..+....
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 478999999999999 566655543
No 491
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=90.49 E-value=0.22 Score=47.87 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=23.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCce
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
..++|+||+|+||+++++.+.+..|..+
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~ 30 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAF 30 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcce
Confidence 4689999999999999999988865433
No 492
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=90.46 E-value=0.15 Score=47.28 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=19.5
Q ss_pred ccccccCCCchHHHHHHHHHHh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.|+++|+||+|||+|++.+...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998743
No 493
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.42 E-value=0.15 Score=50.41 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=24.0
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
++..-.+.|+||+|+|||+|++.++.+.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34446799999999999999999997653
No 494
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=90.41 E-value=0.15 Score=50.94 Aligned_cols=29 Identities=28% Similarity=0.322 Sum_probs=24.3
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+...-.+.|+|++|+|||+|++.++.+.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34456899999999999999999997653
No 495
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=90.40 E-value=0.16 Score=50.01 Aligned_cols=28 Identities=25% Similarity=0.533 Sum_probs=23.6
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcC
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...-.+.|+||+|+|||+|++.++.+.+
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446789999999999999999997653
No 496
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=90.40 E-value=0.15 Score=49.16 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=23.8
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+...-.+.|+||+|+|||+|++.++.+.+
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34446789999999999999999987643
No 497
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=90.36 E-value=0.16 Score=47.53 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=19.5
Q ss_pred ccccccCCCchHHHHHHHHHHh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+|+++|++|+|||+|+..+...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~ 22 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTL 22 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhh
Confidence 5889999999999999998754
No 498
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.36 E-value=0.32 Score=51.95 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.4
Q ss_pred cccccccccccCCCchHHHHHHHHHHh
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+.....++|+||+|+|||+++..++..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 344468999999999999999988864
No 499
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=90.32 E-value=0.18 Score=48.38 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred cccccCCCchHHHHHHHHHHhcC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
|.+.|+||+|||++++.+++...
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~ 24 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLR 24 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998754
No 500
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=90.32 E-value=0.15 Score=47.26 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=19.1
Q ss_pred ccccccCCCchHHHHHHHHHHh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+|+++|++|+|||+|++.+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~ 22 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHA 22 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcC
Confidence 4789999999999999988753
Done!