Query 006051
Match_columns 663
No_of_seqs 409 out of 4098
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 14:39:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006051.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006051hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3f9v_A Minichromosome maintena 100.0 3.2E-91 1.1E-95 788.3 34.3 574 8-615 3-594 (595)
2 3f8t_A Predicted ATPase involv 100.0 3E-70 1E-74 580.0 23.8 403 164-623 81-498 (506)
3 1ltl_A DNA replication initiat 100.0 3.1E-48 1.1E-52 396.5 25.6 259 5-295 10-269 (279)
4 2vl6_A SSO MCM N-TER, minichro 100.0 1.6E-46 5.3E-51 382.6 25.3 247 8-275 9-267 (268)
5 2r44_A Uncharacterized protein 99.9 8.9E-24 3E-28 222.7 24.2 268 306-609 19-298 (331)
6 3nbx_X ATPase RAVA; AAA+ ATPas 99.9 6.4E-23 2.2E-27 225.3 21.0 266 305-608 13-286 (500)
7 1g8p_A Magnesium-chelatase 38 99.9 1.2E-22 4E-27 215.5 16.9 265 313-611 23-325 (350)
8 3k1j_A LON protease, ATP-depen 99.8 4.2E-20 1.4E-24 209.7 14.4 239 314-607 41-374 (604)
9 1ojl_A Transcriptional regulat 99.8 1.7E-18 5.7E-23 179.7 11.5 212 347-603 25-247 (304)
10 3pfi_A Holliday junction ATP-d 99.7 1.7E-17 5.8E-22 175.0 16.6 222 313-609 28-255 (338)
11 1ofh_A ATP-dependent HSL prote 99.7 4.9E-18 1.7E-22 176.5 9.9 266 306-606 7-297 (310)
12 2bjv_A PSP operon transcriptio 99.7 6E-18 2.1E-22 172.2 10.2 233 315-601 7-250 (265)
13 1um8_A ATP-dependent CLP prote 99.7 9E-18 3.1E-22 179.9 9.7 268 307-603 14-360 (376)
14 4b4t_J 26S protease regulatory 99.7 9.1E-17 3.1E-21 169.8 13.4 224 315-612 149-393 (405)
15 1ny5_A Transcriptional regulat 99.7 1.9E-17 6.3E-22 177.7 7.8 205 347-603 160-382 (387)
16 4b4t_I 26S protease regulatory 99.7 1.9E-16 6.6E-21 167.6 13.8 226 314-612 182-427 (437)
17 4fcw_A Chaperone protein CLPB; 99.7 9.7E-17 3.3E-21 167.0 10.9 241 307-586 10-276 (311)
18 3dzd_A Transcriptional regulat 99.7 4.2E-17 1.4E-21 173.6 7.2 193 347-588 152-361 (368)
19 3hws_A ATP-dependent CLP prote 99.7 1.4E-17 4.8E-22 177.5 2.9 255 308-592 9-326 (363)
20 1hqc_A RUVB; extended AAA-ATPa 99.7 2.9E-15 1E-19 156.7 20.0 221 313-608 11-238 (324)
21 4b4t_H 26S protease regulatory 99.7 1.2E-15 4.1E-20 163.2 16.9 226 314-612 209-454 (467)
22 3syl_A Protein CBBX; photosynt 99.7 5E-16 1.7E-20 161.5 13.4 235 306-602 23-280 (309)
23 4b4t_K 26S protease regulatory 99.6 9.7E-16 3.3E-20 164.3 15.0 220 315-607 173-413 (428)
24 4b4t_M 26S protease regulatory 99.6 2.3E-16 7.7E-21 169.3 9.6 225 314-612 181-426 (434)
25 4b4t_L 26S protease subunit RP 99.6 6.2E-16 2.1E-20 166.1 12.3 224 315-612 182-426 (437)
26 1r6b_X CLPA protein; AAA+, N-t 99.6 2.1E-15 7.2E-20 176.1 16.9 240 306-584 450-711 (758)
27 3eie_A Vacuolar protein sortin 99.6 4.4E-16 1.5E-20 163.0 9.8 166 313-508 17-197 (322)
28 1lv7_A FTSH; alpha/beta domain 99.6 4.2E-15 1.4E-19 150.3 15.0 220 313-609 11-253 (257)
29 3pvs_A Replication-associated 99.6 3E-15 1E-19 162.9 14.5 212 313-606 25-242 (447)
30 1xwi_A SKD1 protein; VPS4B, AA 99.6 4.3E-15 1.5E-19 155.3 13.9 168 313-508 11-192 (322)
31 2qp9_X Vacuolar protein sortin 99.6 3.8E-15 1.3E-19 157.9 12.9 167 313-508 50-230 (355)
32 3m6a_A ATP-dependent protease 99.6 1.7E-15 5.8E-20 169.3 10.5 247 309-607 76-340 (543)
33 3pxi_A Negative regulator of g 99.6 1.9E-15 6.6E-20 176.2 11.1 228 310-583 487-719 (758)
34 3b9p_A CG5977-PA, isoform A; A 99.6 1.3E-14 4.5E-19 149.9 15.0 169 313-507 20-201 (297)
35 3h4m_A Proteasome-activating n 99.6 1.3E-14 4.5E-19 148.9 14.5 230 314-612 17-262 (285)
36 3vfd_A Spastin; ATPase, microt 99.6 2.1E-14 7.2E-19 154.3 16.6 168 313-508 114-295 (389)
37 3uk6_A RUVB-like 2; hexameric 99.6 2.1E-14 7.1E-19 153.0 16.3 141 410-608 190-330 (368)
38 2qz4_A Paraplegin; AAA+, SPG7, 99.6 1.9E-14 6.6E-19 145.6 15.0 231 313-612 5-253 (262)
39 3d8b_A Fidgetin-like protein 1 99.6 3.1E-14 1.1E-18 151.1 15.8 244 313-613 83-339 (357)
40 2zan_A Vacuolar protein sortin 99.5 2.7E-14 9.2E-19 155.9 12.7 169 313-508 133-314 (444)
41 1qvr_A CLPB protein; coiled co 99.5 3.9E-14 1.3E-18 167.1 13.1 232 313-584 557-815 (854)
42 1in4_A RUVB, holliday junction 99.5 1.2E-12 4.1E-17 137.6 19.4 220 315-609 26-251 (334)
43 1g41_A Heat shock protein HSLU 99.5 1.8E-13 6.3E-18 147.0 12.3 143 406-583 246-402 (444)
44 2ce7_A Cell division protein F 99.5 3.1E-13 1E-17 147.4 13.8 220 313-608 15-256 (476)
45 2c9o_A RUVB-like 1; hexameric 99.5 3.7E-13 1.3E-17 147.5 14.4 141 411-612 297-441 (456)
46 3hu3_A Transitional endoplasmi 99.5 1.8E-13 6.1E-18 150.4 11.6 158 314-501 204-379 (489)
47 2chg_A Replication factor C sm 99.4 6.6E-13 2.3E-17 130.0 14.3 199 312-606 15-224 (226)
48 2dhr_A FTSH; AAA+ protein, hex 99.4 7.3E-13 2.5E-17 145.2 14.5 220 313-610 30-273 (499)
49 3cf0_A Transitional endoplasmi 99.4 2.2E-13 7.4E-18 141.1 9.7 166 314-509 15-200 (301)
50 2r62_A Cell division protease 99.4 7.4E-14 2.5E-18 142.0 5.8 222 314-608 11-253 (268)
51 1sxj_D Activator 1 41 kDa subu 99.4 4.7E-12 1.6E-16 133.7 17.4 209 313-606 36-261 (353)
52 3n70_A Transport activator; si 99.4 6.9E-13 2.4E-17 121.8 9.3 111 347-488 24-137 (145)
53 3u61_B DNA polymerase accessor 99.4 1.4E-11 4.7E-16 128.8 18.7 206 313-605 25-234 (324)
54 3pxg_A Negative regulator of g 99.4 4.9E-12 1.7E-16 138.9 15.6 233 313-608 179-426 (468)
55 3co5_A Putative two-component 99.3 3.8E-13 1.3E-17 123.2 3.8 107 347-487 27-134 (143)
56 1iqp_A RFCS; clamp loader, ext 99.3 7.2E-12 2.5E-16 130.7 12.4 204 312-605 23-231 (327)
57 3cf2_A TER ATPase, transitiona 99.3 1E-12 3.4E-17 150.9 5.3 158 315-502 478-655 (806)
58 2chq_A Replication factor C sm 99.3 6.4E-12 2.2E-16 130.6 10.6 137 313-493 16-160 (319)
59 3t15_A Ribulose bisphosphate c 99.3 1.8E-12 6.2E-17 133.5 5.8 144 344-508 33-198 (293)
60 1ixz_A ATP-dependent metallopr 99.3 8.4E-12 2.9E-16 125.7 10.0 182 348-605 50-253 (254)
61 1njg_A DNA polymerase III subu 99.3 9.1E-11 3.1E-15 116.1 17.1 209 312-605 21-248 (250)
62 2v1u_A Cell division control p 99.3 8E-11 2.7E-15 125.6 17.7 235 313-611 18-279 (387)
63 3bos_A Putative DNA replicatio 99.3 1.2E-10 4.2E-15 115.4 17.2 180 348-606 53-241 (242)
64 1iy2_A ATP-dependent metallopr 99.2 1.1E-11 3.9E-16 126.6 9.1 185 348-605 74-277 (278)
65 2x8a_A Nuclear valosin-contain 99.2 2.1E-11 7.1E-16 124.2 10.7 162 314-508 10-191 (274)
66 1sxj_C Activator 1 40 kDa subu 99.2 3E-11 1E-15 127.2 11.6 141 313-495 24-170 (340)
67 3cf2_A TER ATPase, transitiona 99.2 4.9E-12 1.7E-16 145.2 5.5 160 313-505 203-382 (806)
68 1d2n_A N-ethylmaleimide-sensit 99.2 7.8E-12 2.7E-16 127.3 5.9 174 346-586 63-247 (272)
69 3pxi_A Negative regulator of g 99.2 2E-10 6.7E-15 133.9 17.4 209 313-580 179-402 (758)
70 1fnn_A CDC6P, cell division co 99.2 3.8E-10 1.3E-14 120.5 17.6 235 314-609 17-275 (389)
71 1l8q_A Chromosomal replication 99.2 2.4E-10 8.2E-15 119.4 15.4 187 347-606 37-238 (324)
72 1sxj_B Activator 1 37 kDa subu 99.1 6.3E-10 2.1E-14 115.7 17.1 142 313-495 20-167 (323)
73 2qby_B CDC6 homolog 3, cell di 99.1 2.1E-10 7.3E-15 122.4 13.8 223 314-609 20-271 (384)
74 2z4s_A Chromosomal replication 99.1 7.8E-11 2.7E-15 128.2 10.3 186 347-608 130-332 (440)
75 1jr3_A DNA polymerase III subu 99.1 9.5E-10 3.2E-14 116.9 17.6 208 313-605 15-241 (373)
76 1r6b_X CLPA protein; AAA+, N-t 99.1 2.2E-10 7.6E-15 133.6 12.7 144 314-498 186-352 (758)
77 1ypw_A Transitional endoplasmi 99.1 2.2E-11 7.7E-16 142.0 2.6 157 313-499 476-653 (806)
78 1sxj_A Activator 1 95 kDa subu 99.1 3.1E-09 1E-13 118.2 18.3 123 314-436 39-178 (516)
79 1qvr_A CLPB protein; coiled co 99.0 8.8E-10 3E-14 130.0 13.0 202 313-563 169-394 (854)
80 1jbk_A CLPB protein; beta barr 99.0 1.2E-10 4.2E-15 110.8 3.7 144 308-491 16-182 (195)
81 2p65_A Hypothetical protein PF 99.0 1.9E-10 6.4E-15 109.2 3.8 140 309-487 17-180 (187)
82 2qby_A CDC6 homolog 1, cell di 99.0 5.9E-09 2E-13 110.9 15.9 227 313-609 19-273 (386)
83 4akg_A Glutathione S-transfera 99.0 1.1E-09 3.6E-14 139.9 11.1 151 348-511 1268-1434(2695)
84 1sxj_E Activator 1 40 kDa subu 98.9 4E-09 1.4E-13 111.3 13.0 142 314-493 14-192 (354)
85 4akg_A Glutathione S-transfera 98.9 2.5E-08 8.4E-13 127.5 22.2 189 348-590 646-842 (2695)
86 3te6_A Regulatory protein SIR3 98.9 9.9E-09 3.4E-13 105.8 12.5 213 347-589 45-287 (318)
87 3vkg_A Dynein heavy chain, cyt 98.8 2E-08 6.8E-13 128.9 12.9 149 348-509 1305-1470(3245)
88 1a5t_A Delta prime, HOLB; zinc 98.7 5.1E-08 1.7E-12 102.1 12.7 140 319-495 7-168 (334)
89 2gno_A DNA polymerase III, gam 98.7 4.5E-08 1.6E-12 100.8 11.7 144 318-506 1-151 (305)
90 1ypw_A Transitional endoplasmi 98.7 1.2E-08 4.1E-13 119.0 7.7 158 313-501 203-378 (806)
91 3vkg_A Dynein heavy chain, cyt 98.5 3.6E-06 1.2E-10 108.5 21.0 190 348-591 605-803 (3245)
92 1w5s_A Origin recognition comp 98.4 3.3E-06 1.1E-10 90.6 14.2 57 545-607 236-292 (412)
93 2kjq_A DNAA-related protein; s 98.2 2.7E-06 9.3E-11 77.8 7.9 101 348-487 37-141 (149)
94 3ec2_A DNA replication protein 98.1 1.4E-06 4.8E-11 82.3 4.0 99 347-462 38-143 (180)
95 1tue_A Replication protein E1; 98.0 5.4E-06 1.8E-10 79.0 6.1 112 348-486 59-172 (212)
96 2w58_A DNAI, primosome compone 97.8 7E-06 2.4E-10 78.9 1.9 24 348-371 55-78 (202)
97 2qgz_A Helicase loader, putati 97.6 8.5E-06 2.9E-10 84.0 -0.9 25 348-372 153-177 (308)
98 2r2a_A Uncharacterized protein 97.5 0.00014 4.8E-09 69.7 7.5 121 348-493 6-152 (199)
99 1u0j_A DNA replication protein 97.4 0.00018 6.1E-09 71.7 7.0 96 348-462 105-200 (267)
100 1ye8_A Protein THEP1, hypothet 97.2 0.00038 1.3E-08 65.4 5.8 24 349-372 2-25 (178)
101 1jr3_D DNA polymerase III, del 97.1 0.0023 7.7E-08 66.7 10.9 79 348-435 19-103 (343)
102 2orw_A Thymidine kinase; TMTK, 97.0 0.00056 1.9E-08 64.6 5.3 27 410-436 77-103 (184)
103 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0022 7.7E-08 65.4 5.9 23 348-370 124-146 (331)
104 2r8r_A Sensor protein; KDPD, P 96.3 0.0021 7.3E-08 62.2 3.7 26 345-370 4-29 (228)
105 2fna_A Conserved hypothetical 96.0 0.02 6.8E-07 59.2 9.7 44 314-373 13-56 (357)
106 1qhx_A CPT, protein (chloramph 95.7 0.0049 1.7E-07 57.3 3.2 30 348-377 4-33 (178)
107 3trf_A Shikimate kinase, SK; a 95.6 0.0056 1.9E-07 57.3 3.2 30 348-377 6-35 (185)
108 1kag_A SKI, shikimate kinase I 95.6 0.0062 2.1E-07 56.2 3.4 30 348-377 5-34 (173)
109 3kb2_A SPBC2 prophage-derived 95.6 0.0062 2.1E-07 56.0 3.2 29 349-377 3-31 (173)
110 1via_A Shikimate kinase; struc 95.6 0.0045 1.5E-07 57.5 2.2 29 349-377 6-34 (175)
111 3iij_A Coilin-interacting nucl 95.5 0.0055 1.9E-07 57.1 2.8 31 347-377 11-41 (180)
112 3vaa_A Shikimate kinase, SK; s 95.5 0.0063 2.1E-07 57.9 3.2 30 348-377 26-55 (199)
113 3upu_A ATP-dependent DNA helic 95.5 0.0087 3E-07 65.0 4.6 86 348-434 46-153 (459)
114 1zuh_A Shikimate kinase; alpha 95.5 0.005 1.7E-07 56.7 2.3 31 348-378 8-38 (168)
115 1y63_A LMAJ004144AAA protein; 95.3 0.007 2.4E-07 56.8 2.7 30 348-377 11-41 (184)
116 2eyu_A Twitching motility prot 95.2 0.046 1.6E-06 54.4 8.4 24 348-371 26-49 (261)
117 2iyv_A Shikimate kinase, SK; t 95.2 0.0075 2.5E-07 56.4 2.3 29 349-377 4-32 (184)
118 3dl0_A Adenylate kinase; phosp 95.1 0.0087 3E-07 57.6 2.7 30 349-378 2-31 (216)
119 1aky_A Adenylate kinase; ATP:A 95.1 0.0081 2.8E-07 58.0 2.5 30 348-377 5-34 (220)
120 1gvn_B Zeta; postsegregational 95.0 0.022 7.7E-07 57.6 5.6 27 347-373 33-59 (287)
121 3lw7_A Adenylate kinase relate 95.0 0.0089 3E-07 54.9 2.3 28 349-377 3-30 (179)
122 2p5t_B PEZT; postsegregational 95.0 0.019 6.6E-07 56.8 4.9 27 347-373 32-58 (253)
123 1zp6_A Hypothetical protein AT 95.0 0.011 3.6E-07 55.6 2.9 27 348-374 10-36 (191)
124 1w36_D RECD, exodeoxyribonucle 95.0 0.017 5.6E-07 65.1 4.9 37 319-370 151-187 (608)
125 2rhm_A Putative kinase; P-loop 95.0 0.011 3.9E-07 55.4 3.1 30 348-377 6-35 (193)
126 3jvv_A Twitching mobility prot 94.9 0.082 2.8E-06 55.1 9.7 24 349-372 125-148 (356)
127 2cdn_A Adenylate kinase; phosp 94.9 0.01 3.6E-07 56.3 2.6 30 348-377 21-50 (201)
128 3cm0_A Adenylate kinase; ATP-b 94.9 0.0082 2.8E-07 56.1 1.8 30 348-377 5-34 (186)
129 2ze6_A Isopentenyl transferase 94.9 0.012 4.3E-07 58.3 3.2 30 349-378 3-32 (253)
130 3t61_A Gluconokinase; PSI-biol 94.9 0.012 4.2E-07 55.9 2.9 30 348-377 19-48 (202)
131 3fb4_A Adenylate kinase; psych 94.8 0.01 3.5E-07 57.0 2.4 30 349-378 2-31 (216)
132 1knq_A Gluconate kinase; ALFA/ 94.8 0.014 4.9E-07 53.9 3.3 29 348-376 9-37 (175)
133 1e6c_A Shikimate kinase; phosp 94.8 0.013 4.6E-07 53.9 2.9 29 349-377 4-32 (173)
134 3sr0_A Adenylate kinase; phosp 94.8 0.01 3.6E-07 56.8 2.2 30 349-378 2-31 (206)
135 2c95_A Adenylate kinase 1; tra 94.8 0.011 3.7E-07 55.7 2.3 30 348-377 10-39 (196)
136 1tev_A UMP-CMP kinase; ploop, 94.7 0.012 4E-07 55.3 2.3 30 348-377 4-33 (196)
137 4eun_A Thermoresistant glucoki 94.7 0.015 5.2E-07 55.2 3.1 29 348-376 30-58 (200)
138 1ly1_A Polynucleotide kinase; 94.7 0.012 4.2E-07 54.4 2.4 22 348-369 3-24 (181)
139 3tlx_A Adenylate kinase 2; str 94.6 0.013 4.4E-07 57.7 2.4 32 347-378 29-60 (243)
140 2pt5_A Shikimate kinase, SK; a 94.5 0.017 5.8E-07 52.9 3.0 29 349-377 2-30 (168)
141 1ak2_A Adenylate kinase isoenz 94.5 0.014 4.9E-07 56.9 2.5 31 348-378 17-47 (233)
142 3e1s_A Exodeoxyribonuclease V, 94.5 0.0037 1.3E-07 69.7 -2.0 23 348-370 205-227 (574)
143 1kht_A Adenylate kinase; phosp 94.5 0.011 3.8E-07 55.3 1.6 25 348-372 4-28 (192)
144 2vli_A Antibiotic resistance p 94.5 0.013 4.5E-07 54.5 2.1 29 348-376 6-34 (183)
145 1zd8_A GTP:AMP phosphotransfer 94.5 0.015 5E-07 56.5 2.4 30 348-377 8-37 (227)
146 3umf_A Adenylate kinase; rossm 94.4 0.014 4.8E-07 56.4 2.2 33 345-377 27-59 (217)
147 2b8t_A Thymidine kinase; deoxy 94.4 0.085 2.9E-06 51.0 7.7 22 348-369 13-34 (223)
148 1cke_A CK, MSSA, protein (cyti 94.4 0.015 5.1E-07 56.3 2.3 31 348-378 6-36 (227)
149 3be4_A Adenylate kinase; malar 94.4 0.015 5.1E-07 56.1 2.3 31 348-378 6-36 (217)
150 2bwj_A Adenylate kinase 5; pho 94.3 0.014 4.8E-07 55.0 2.0 30 348-377 13-42 (199)
151 1e4v_A Adenylate kinase; trans 94.3 0.015 5.3E-07 55.8 2.2 30 349-378 2-31 (214)
152 1qf9_A UMP/CMP kinase, protein 94.2 0.016 5.4E-07 54.3 2.0 30 348-377 7-36 (194)
153 1ukz_A Uridylate kinase; trans 94.2 0.02 7E-07 54.3 2.7 30 348-377 16-45 (203)
154 1zak_A Adenylate kinase; ATP:A 94.1 0.014 4.9E-07 56.3 1.6 29 348-376 6-34 (222)
155 3nwj_A ATSK2; P loop, shikimat 94.1 0.022 7.6E-07 56.3 3.0 31 348-378 49-79 (250)
156 2ewv_A Twitching motility prot 93.9 0.089 3E-06 55.2 7.3 25 348-372 137-161 (372)
157 2qor_A Guanylate kinase; phosp 93.9 0.027 9.4E-07 53.6 2.9 26 347-372 12-37 (204)
158 3cmw_A Protein RECA, recombina 93.8 0.074 2.5E-06 65.8 7.2 24 348-371 1083-1106(1706)
159 2xb4_A Adenylate kinase; ATP-b 93.7 0.027 9.1E-07 54.6 2.6 30 349-378 2-31 (223)
160 2bdt_A BH3686; alpha-beta prot 93.7 0.03 1E-06 52.4 2.9 24 349-372 4-27 (189)
161 2jaq_A Deoxyguanosine kinase; 93.7 0.028 9.5E-07 53.1 2.7 27 349-375 2-28 (205)
162 1kgd_A CASK, peripheral plasma 93.7 0.027 9.3E-07 52.5 2.5 25 348-372 6-30 (180)
163 3r20_A Cytidylate kinase; stru 93.6 0.026 8.9E-07 55.1 2.3 31 347-377 9-39 (233)
164 3tr0_A Guanylate kinase, GMP k 93.6 0.027 9.3E-07 53.3 2.5 25 348-372 8-32 (205)
165 2fz4_A DNA repair protein RAD2 93.6 0.11 3.8E-06 50.7 6.9 25 349-373 110-134 (237)
166 2j41_A Guanylate kinase; GMP, 93.6 0.027 9.1E-07 53.5 2.3 24 348-371 7-30 (207)
167 1nks_A Adenylate kinase; therm 93.6 0.024 8.1E-07 53.1 1.9 24 349-372 3-26 (194)
168 2qen_A Walker-type ATPase; unk 93.6 0.045 1.5E-06 56.3 4.3 45 314-372 12-56 (350)
169 2bbw_A Adenylate kinase 4, AK4 93.5 0.028 9.7E-07 55.2 2.4 26 348-373 28-53 (246)
170 2pbr_A DTMP kinase, thymidylat 93.4 0.039 1.3E-06 51.6 3.1 29 349-377 2-33 (195)
171 2if2_A Dephospho-COA kinase; a 93.4 0.029 9.8E-07 53.3 2.2 28 349-377 3-30 (204)
172 3uie_A Adenylyl-sulfate kinase 93.4 0.03 1E-06 53.1 2.3 25 348-372 26-50 (200)
173 1ex7_A Guanylate kinase; subst 93.3 0.049 1.7E-06 51.2 3.6 28 348-375 2-29 (186)
174 2z0h_A DTMP kinase, thymidylat 93.3 0.041 1.4E-06 51.7 3.1 28 350-377 3-33 (197)
175 1jjv_A Dephospho-COA kinase; P 93.3 0.031 1.1E-06 53.2 2.2 28 349-377 4-31 (206)
176 2plr_A DTMP kinase, probable t 93.2 0.032 1.1E-06 53.0 2.2 26 348-373 5-30 (213)
177 1htw_A HI0065; nucleotide-bind 93.2 0.042 1.4E-06 50.2 2.8 25 348-372 34-58 (158)
178 2v54_A DTMP kinase, thymidylat 93.2 0.046 1.6E-06 51.7 3.2 24 348-371 5-28 (204)
179 3ake_A Cytidylate kinase; CMP 93.1 0.035 1.2E-06 52.6 2.3 30 349-378 4-33 (208)
180 3a4m_A L-seryl-tRNA(SEC) kinas 93.1 0.044 1.5E-06 54.4 3.1 29 348-376 5-36 (260)
181 3crm_A TRNA delta(2)-isopenten 93.0 0.062 2.1E-06 55.0 4.0 32 348-379 6-37 (323)
182 2pez_A Bifunctional 3'-phospho 92.9 0.056 1.9E-06 50.1 3.3 24 348-371 6-29 (179)
183 1lvg_A Guanylate kinase, GMP k 92.8 0.041 1.4E-06 52.2 2.3 25 348-372 5-29 (198)
184 1nn5_A Similar to deoxythymidy 92.8 0.04 1.4E-06 52.6 2.3 26 347-372 9-34 (215)
185 1svm_A Large T antigen; AAA+ f 92.8 0.05 1.7E-06 57.1 3.1 28 347-374 169-196 (377)
186 4e22_A Cytidylate kinase; P-lo 92.8 0.047 1.6E-06 53.9 2.8 31 348-378 28-58 (252)
187 3tau_A Guanylate kinase, GMP k 92.8 0.044 1.5E-06 52.4 2.5 26 348-373 9-34 (208)
188 1uf9_A TT1252 protein; P-loop, 92.8 0.053 1.8E-06 51.2 3.0 29 348-377 9-37 (203)
189 2grj_A Dephospho-COA kinase; T 92.6 0.046 1.6E-06 51.6 2.3 31 348-378 13-43 (192)
190 3a8t_A Adenylate isopentenyltr 92.6 0.067 2.3E-06 55.0 3.6 32 348-379 41-72 (339)
191 2yvu_A Probable adenylyl-sulfa 92.5 0.049 1.7E-06 50.8 2.4 26 347-372 13-38 (186)
192 2qt1_A Nicotinamide riboside k 92.5 0.052 1.8E-06 51.7 2.5 25 347-371 21-45 (207)
193 1upt_A ARL1, ADP-ribosylation 92.4 0.056 1.9E-06 49.1 2.6 26 344-369 4-29 (171)
194 3a00_A Guanylate kinase, GMP k 92.4 0.053 1.8E-06 50.7 2.5 25 349-373 3-27 (186)
195 2wwf_A Thymidilate kinase, put 92.4 0.053 1.8E-06 51.6 2.5 25 348-372 11-35 (212)
196 3tqc_A Pantothenate kinase; bi 92.4 0.058 2E-06 55.3 2.8 85 279-372 32-117 (321)
197 3clv_A RAB5 protein, putative; 92.3 0.062 2.1E-06 50.2 2.8 26 345-370 5-30 (208)
198 1w4r_A Thymidine kinase; type 92.3 0.15 5.2E-06 48.0 5.3 22 349-370 22-44 (195)
199 1uj2_A Uridine-cytidine kinase 92.2 0.073 2.5E-06 52.5 3.3 27 348-374 23-49 (252)
200 1znw_A Guanylate kinase, GMP k 92.1 0.068 2.3E-06 50.9 2.8 28 345-372 18-45 (207)
201 2h92_A Cytidylate kinase; ross 92.0 0.067 2.3E-06 51.3 2.8 31 348-378 4-34 (219)
202 1z6g_A Guanylate kinase; struc 92.0 0.072 2.5E-06 51.3 2.9 25 348-372 24-48 (218)
203 3c8u_A Fructokinase; YP_612366 92.0 0.055 1.9E-06 51.7 2.0 25 348-372 23-47 (208)
204 1vht_A Dephospho-COA kinase; s 91.8 0.086 3E-06 50.5 3.3 29 348-377 5-33 (218)
205 1s96_A Guanylate kinase, GMP k 91.8 0.074 2.5E-06 51.4 2.7 25 348-372 17-41 (219)
206 4gp7_A Metallophosphoesterase; 91.8 0.054 1.8E-06 50.0 1.7 20 348-367 10-29 (171)
207 3cmu_A Protein RECA, recombina 91.8 0.062 2.1E-06 67.4 2.6 28 344-371 1424-1451(2050)
208 3asz_A Uridine kinase; cytidin 91.7 0.057 1.9E-06 51.5 1.8 25 348-372 7-31 (211)
209 1q3t_A Cytidylate kinase; nucl 91.7 0.071 2.4E-06 52.0 2.5 31 348-378 17-47 (236)
210 3ney_A 55 kDa erythrocyte memb 91.7 0.074 2.5E-06 50.4 2.5 26 348-373 20-45 (197)
211 2qmh_A HPR kinase/phosphorylas 91.5 0.082 2.8E-06 50.0 2.5 25 348-372 35-59 (205)
212 2ehv_A Hypothetical protein PH 91.3 0.082 2.8E-06 51.6 2.5 23 346-368 29-51 (251)
213 3foz_A TRNA delta(2)-isopenten 91.2 0.13 4.5E-06 52.1 3.9 30 349-378 12-41 (316)
214 4a74_A DNA repair and recombin 91.2 0.089 3.1E-06 50.6 2.7 25 347-371 25-49 (231)
215 2v9p_A Replication protein E1; 91.2 0.091 3.1E-06 53.4 2.7 25 347-371 126-150 (305)
216 1m7g_A Adenylylsulfate kinase; 91.2 0.084 2.9E-06 50.4 2.4 25 348-372 26-50 (211)
217 2cvh_A DNA repair and recombin 91.1 0.13 4.6E-06 48.9 3.8 23 347-369 20-42 (220)
218 2w0m_A SSO2452; RECA, SSPF, un 91.1 0.088 3E-06 50.6 2.5 23 348-370 24-46 (235)
219 1n0w_A DNA repair protein RAD5 91.0 0.098 3.4E-06 50.8 2.7 24 347-370 24-47 (243)
220 2ga8_A Hypothetical 39.9 kDa p 90.9 0.052 1.8E-06 56.1 0.7 28 348-375 25-52 (359)
221 1ltq_A Polynucleotide kinase; 90.9 0.084 2.9E-06 53.4 2.2 24 348-371 3-26 (301)
222 2gza_A Type IV secretion syste 90.9 0.11 3.7E-06 54.3 3.0 25 348-372 176-200 (361)
223 3d3q_A TRNA delta(2)-isopenten 90.8 0.12 4E-06 53.3 3.1 30 349-378 9-38 (340)
224 1kao_A RAP2A; GTP-binding prot 90.8 0.092 3.1E-06 47.2 2.1 23 348-370 4-26 (167)
225 3oes_A GTPase rhebl1; small GT 90.7 0.086 2.9E-06 49.7 1.9 31 340-370 17-47 (201)
226 3exa_A TRNA delta(2)-isopenten 90.7 0.12 3.9E-06 52.6 2.9 29 349-377 5-33 (322)
227 3sop_A Neuronal-specific septi 90.7 0.086 2.9E-06 52.7 2.0 25 348-372 3-27 (270)
228 1z2a_A RAS-related protein RAB 90.7 0.097 3.3E-06 47.2 2.2 24 347-370 5-28 (168)
229 3b85_A Phosphate starvation-in 90.6 0.098 3.4E-06 50.0 2.2 23 348-370 23-45 (208)
230 1ek0_A Protein (GTP-binding pr 90.5 0.095 3.3E-06 47.3 2.0 23 348-370 4-26 (170)
231 1nrj_B SR-beta, signal recogni 90.5 0.11 3.8E-06 49.5 2.5 25 347-371 12-36 (218)
232 1m7b_A RND3/RHOE small GTP-bin 90.4 0.096 3.3E-06 48.5 1.9 24 347-370 7-30 (184)
233 1u8z_A RAS-related protein RAL 90.4 0.11 3.6E-06 46.8 2.2 23 348-370 5-27 (168)
234 2gmg_A Hypothetical protein PF 90.4 0.2 6.8E-06 41.5 3.5 29 146-187 65-93 (105)
235 2oap_1 GSPE-2, type II secreti 90.3 0.17 5.8E-06 55.4 4.1 26 348-373 261-286 (511)
236 2i3b_A HCR-ntpase, human cance 90.3 0.11 3.9E-06 48.8 2.3 23 349-371 3-25 (189)
237 1ky3_A GTP-binding protein YPT 90.3 0.11 3.7E-06 47.6 2.1 25 346-370 7-31 (182)
238 3eph_A TRNA isopentenyltransfe 90.3 0.28 9.6E-06 51.6 5.5 30 349-378 4-33 (409)
239 2f9l_A RAB11B, member RAS onco 90.2 0.11 3.7E-06 48.9 2.2 24 348-371 6-29 (199)
240 2wjg_A FEOB, ferrous iron tran 90.2 0.12 4E-06 47.9 2.3 23 347-369 7-29 (188)
241 3q85_A GTP-binding protein REM 90.2 0.11 3.7E-06 47.0 2.0 22 348-369 3-24 (169)
242 3lnc_A Guanylate kinase, GMP k 90.1 0.085 2.9E-06 51.1 1.4 28 345-372 25-53 (231)
243 2ce2_X GTPase HRAS; signaling 90.1 0.11 3.7E-06 46.6 1.9 23 348-370 4-26 (166)
244 1c1y_A RAS-related protein RAP 90.1 0.12 4E-06 46.6 2.2 22 348-369 4-25 (167)
245 2erx_A GTP-binding protein DI- 90.0 0.11 3.6E-06 47.1 1.8 22 348-369 4-25 (172)
246 1z08_A RAS-related protein RAB 90.0 0.11 3.8E-06 46.9 2.0 24 347-370 6-29 (170)
247 2nzj_A GTP-binding protein REM 90.0 0.12 3.9E-06 47.1 2.0 22 348-369 5-26 (175)
248 3tif_A Uncharacterized ABC tra 90.0 0.1 3.5E-06 50.9 1.8 27 346-372 30-56 (235)
249 2dyk_A GTP-binding protein; GT 89.9 0.12 4.1E-06 46.2 2.1 23 348-370 2-24 (161)
250 2ged_A SR-beta, signal recogni 89.9 0.13 4.6E-06 47.7 2.5 25 347-371 48-72 (193)
251 2gj8_A MNME, tRNA modification 89.9 0.11 3.6E-06 47.8 1.7 23 348-370 5-27 (172)
252 1wms_A RAB-9, RAB9, RAS-relate 89.9 0.11 3.9E-06 47.3 1.9 24 347-370 7-30 (177)
253 1z0j_A RAB-22, RAS-related pro 89.8 0.12 4.3E-06 46.5 2.1 24 347-370 6-29 (170)
254 3zvl_A Bifunctional polynucleo 89.8 0.1 3.4E-06 55.7 1.7 29 347-375 258-286 (416)
255 2pcj_A ABC transporter, lipopr 89.8 0.092 3.2E-06 50.8 1.3 26 347-372 30-55 (224)
256 4b3f_X DNA-binding protein smu 89.8 0.19 6.6E-06 56.8 4.1 36 320-369 192-228 (646)
257 3q72_A GTP-binding protein RAD 89.8 0.12 4E-06 46.7 1.9 21 348-368 3-23 (166)
258 1r2q_A RAS-related protein RAB 89.8 0.12 4.1E-06 46.6 2.0 23 347-369 6-28 (170)
259 2zej_A Dardarin, leucine-rich 89.7 0.11 3.6E-06 48.3 1.6 22 348-369 3-24 (184)
260 2f6r_A COA synthase, bifunctio 89.7 0.12 4E-06 52.0 2.0 29 348-377 76-104 (281)
261 2hxs_A RAB-26, RAS-related pro 89.7 0.13 4.3E-06 47.0 2.1 24 347-370 6-29 (178)
262 3t1o_A Gliding protein MGLA; G 89.7 0.14 4.7E-06 47.6 2.4 26 347-372 14-39 (198)
263 1xx6_A Thymidine kinase; NESG, 89.6 0.57 1.9E-05 44.0 6.6 25 410-434 82-106 (191)
264 1g16_A RAS-related protein SEC 89.6 0.12 4.2E-06 46.6 1.9 23 348-370 4-26 (170)
265 1r8s_A ADP-ribosylation factor 89.6 0.14 4.7E-06 46.0 2.3 22 349-370 2-23 (164)
266 1zd9_A ADP-ribosylation factor 89.6 0.13 4.4E-06 47.8 2.1 27 344-370 19-45 (188)
267 2onk_A Molybdate/tungstate ABC 89.6 0.13 4.3E-06 50.5 2.1 28 344-372 22-49 (240)
268 2dr3_A UPF0273 protein PH0284; 89.5 0.14 4.9E-06 49.7 2.5 23 347-369 23-45 (247)
269 1gtv_A TMK, thymidylate kinase 89.5 0.079 2.7E-06 50.4 0.5 23 350-372 3-25 (214)
270 2wji_A Ferrous iron transport 89.5 0.13 4.4E-06 46.7 2.0 23 348-370 4-26 (165)
271 2lkc_A Translation initiation 89.5 0.14 4.8E-06 46.7 2.3 23 347-369 8-30 (178)
272 2jeo_A Uridine-cytidine kinase 89.4 0.15 5E-06 50.0 2.4 26 348-373 26-51 (245)
273 2bov_A RAla, RAS-related prote 89.4 0.14 4.9E-06 48.0 2.3 25 346-370 13-37 (206)
274 1oix_A RAS-related protein RAB 89.3 0.13 4.5E-06 48.0 2.0 24 348-371 30-53 (191)
275 3bc1_A RAS-related protein RAB 89.3 0.14 4.7E-06 47.4 2.1 23 347-369 11-33 (195)
276 4eaq_A DTMP kinase, thymidylat 89.3 0.16 5.4E-06 49.4 2.5 25 348-372 27-51 (229)
277 1sgw_A Putative ABC transporte 89.2 0.12 4.1E-06 49.6 1.6 25 348-372 36-60 (214)
278 3gmt_A Adenylate kinase; ssgci 89.2 0.13 4.5E-06 49.8 1.9 30 349-378 10-39 (230)
279 3ihw_A Centg3; RAS, centaurin, 89.2 0.15 5.2E-06 47.3 2.3 25 345-369 18-42 (184)
280 3vkw_A Replicase large subunit 89.1 0.087 3E-06 56.2 0.6 23 348-370 162-184 (446)
281 2cbz_A Multidrug resistance-as 89.1 0.11 3.6E-06 50.9 1.1 27 346-372 30-56 (237)
282 1vma_A Cell division protein F 89.1 0.81 2.8E-05 46.4 7.8 26 346-371 103-128 (306)
283 1rz3_A Hypothetical protein rb 89.0 0.17 5.7E-06 47.9 2.4 24 348-371 23-46 (201)
284 3cph_A RAS-related protein SEC 89.0 0.16 5.3E-06 48.1 2.3 26 344-369 17-42 (213)
285 2g6b_A RAS-related protein RAB 89.0 0.15 5.1E-06 46.6 2.1 25 346-370 9-33 (180)
286 1b0u_A Histidine permease; ABC 89.0 0.13 4.3E-06 51.2 1.6 25 348-372 33-57 (262)
287 2qi9_C Vitamin B12 import ATP- 89.0 0.12 4.3E-06 50.8 1.5 26 347-372 26-51 (249)
288 1mv5_A LMRA, multidrug resista 88.9 0.13 4.3E-06 50.6 1.5 28 345-372 26-53 (243)
289 4dsu_A GTPase KRAS, isoform 2B 88.9 0.15 5E-06 47.0 2.0 24 347-370 4-27 (189)
290 1g6h_A High-affinity branched- 88.9 0.13 4.4E-06 51.0 1.6 28 345-372 31-58 (257)
291 3kta_A Chromosome segregation 88.9 0.17 5.7E-06 46.8 2.3 24 349-372 28-51 (182)
292 1z0f_A RAB14, member RAS oncog 88.9 0.16 5.5E-06 46.2 2.2 24 347-370 15-38 (179)
293 2pt7_A CAG-ALFA; ATPase, prote 88.8 0.2 6.9E-06 51.5 3.1 25 348-372 172-196 (330)
294 3kkq_A RAS-related protein M-R 88.7 0.17 5.7E-06 46.6 2.2 24 347-370 18-41 (183)
295 2ff7_A Alpha-hemolysin translo 88.7 0.14 4.7E-06 50.4 1.7 26 347-372 35-60 (247)
296 3aez_A Pantothenate kinase; tr 88.7 0.18 6.2E-06 51.4 2.6 26 347-372 90-115 (312)
297 2pze_A Cystic fibrosis transme 88.7 0.13 4.6E-06 49.9 1.5 26 347-372 34-59 (229)
298 2oil_A CATX-8, RAS-related pro 88.7 0.17 5.7E-06 47.1 2.2 24 347-370 25-48 (193)
299 2y8e_A RAB-protein 6, GH09086P 88.7 0.15 5E-06 46.5 1.8 22 348-369 15-36 (179)
300 2fn4_A P23, RAS-related protei 88.7 0.16 5.3E-06 46.4 1.9 24 347-370 9-32 (181)
301 2iwr_A Centaurin gamma 1; ANK 88.7 0.14 4.9E-06 46.8 1.6 24 347-370 7-30 (178)
302 1ksh_A ARF-like protein 2; sma 88.6 0.16 5.6E-06 46.8 2.0 24 346-369 17-40 (186)
303 2gf0_A GTP-binding protein DI- 88.6 0.17 5.8E-06 47.1 2.2 23 347-369 8-30 (199)
304 1z06_A RAS-related protein RAB 88.6 0.17 5.8E-06 46.9 2.1 24 346-369 19-42 (189)
305 3con_A GTPase NRAS; structural 88.5 0.16 5.6E-06 47.0 2.0 24 347-370 21-44 (190)
306 3b9q_A Chloroplast SRP recepto 88.5 0.44 1.5E-05 48.3 5.3 28 344-371 97-124 (302)
307 1m2o_B GTP-binding protein SAR 88.5 0.17 5.7E-06 47.2 2.0 23 347-369 23-45 (190)
308 2efe_B Small GTP-binding prote 88.5 0.17 5.8E-06 46.3 2.0 24 347-370 12-35 (181)
309 2atv_A RERG, RAS-like estrogen 88.4 0.19 6.4E-06 47.0 2.3 24 347-370 28-51 (196)
310 1x3s_A RAS-related protein RAB 88.4 0.19 6.4E-06 46.6 2.3 25 346-370 14-38 (195)
311 1ji0_A ABC transporter; ATP bi 88.4 0.14 4.9E-06 50.0 1.6 26 347-372 32-57 (240)
312 3gfo_A Cobalt import ATP-bindi 88.4 0.14 4.9E-06 51.2 1.5 26 347-372 34-59 (275)
313 2ghi_A Transport protein; mult 88.4 0.15 5.1E-06 50.6 1.7 27 346-372 45-71 (260)
314 3tw8_B RAS-related protein RAB 88.4 0.16 5.4E-06 46.4 1.8 23 347-369 9-31 (181)
315 3bwd_D RAC-like GTP-binding pr 88.4 0.2 6.8E-06 45.9 2.4 24 347-370 8-31 (182)
316 2a9k_A RAS-related protein RAL 88.3 0.18 6.2E-06 46.2 2.2 24 347-370 18-41 (187)
317 1svi_A GTP-binding protein YSX 88.3 0.16 5.6E-06 47.1 1.9 24 346-369 22-45 (195)
318 3reg_A RHO-like small GTPase; 88.3 0.18 6E-06 47.0 2.0 25 346-370 22-46 (194)
319 2ixe_A Antigen peptide transpo 88.3 0.15 5.2E-06 50.9 1.7 25 348-372 46-70 (271)
320 1lw7_A Transcriptional regulat 88.3 0.22 7.4E-06 52.0 2.9 26 348-373 171-196 (365)
321 2olj_A Amino acid ABC transpor 88.3 0.15 5.2E-06 50.6 1.6 25 348-372 51-75 (263)
322 1vg8_A RAS-related protein RAB 88.2 0.18 6.3E-06 47.3 2.1 25 346-370 7-31 (207)
323 2p5s_A RAS and EF-hand domain 88.2 0.19 6.6E-06 47.1 2.3 26 345-370 26-51 (199)
324 4g1u_C Hemin import ATP-bindin 88.2 0.14 4.9E-06 50.9 1.4 26 347-372 37-62 (266)
325 1moz_A ARL1, ADP-ribosylation 88.1 0.13 4.4E-06 47.3 0.9 22 347-368 18-39 (183)
326 1zj6_A ADP-ribosylation factor 88.1 0.18 6.2E-06 46.6 2.0 23 347-369 16-38 (187)
327 1pzn_A RAD51, DNA repair and r 88.1 0.21 7.2E-06 51.8 2.7 27 345-371 129-155 (349)
328 1cr0_A DNA primase/helicase; R 88.1 0.2 7E-06 50.4 2.5 24 348-371 36-59 (296)
329 3c5c_A RAS-like protein 12; GD 88.1 0.19 6.6E-06 46.6 2.1 24 347-370 21-44 (187)
330 1mh1_A RAC1; GTP-binding, GTPa 88.0 0.19 6.5E-06 46.1 2.1 23 347-369 5-27 (186)
331 2yz2_A Putative ABC transporte 88.0 0.16 5.5E-06 50.5 1.7 27 346-372 32-58 (266)
332 3hr8_A Protein RECA; alpha and 88.0 0.25 8.6E-06 51.3 3.2 23 348-370 62-84 (356)
333 1vpl_A ABC transporter, ATP-bi 88.0 0.16 5.5E-06 50.2 1.6 25 348-372 42-66 (256)
334 2bme_A RAB4A, RAS-related prot 88.0 0.18 6.3E-06 46.3 1.9 24 347-370 10-33 (186)
335 2nq2_C Hypothetical ABC transp 88.0 0.16 5.4E-06 50.2 1.5 26 347-372 31-56 (253)
336 2cxx_A Probable GTP-binding pr 88.0 0.17 5.9E-06 46.6 1.8 22 348-369 2-23 (190)
337 2ihy_A ABC transporter, ATP-bi 88.0 0.16 5.4E-06 51.0 1.5 25 348-372 48-72 (279)
338 3t5g_A GTP-binding protein RHE 87.9 0.18 6.2E-06 46.2 1.9 23 347-369 6-28 (181)
339 3tqf_A HPR(Ser) kinase; transf 87.9 0.2 7E-06 46.1 2.1 23 348-370 17-39 (181)
340 3q3j_B RHO-related GTP-binding 87.9 0.2 7E-06 47.7 2.3 26 345-370 25-50 (214)
341 3pqc_A Probable GTP-binding pr 87.8 0.23 7.8E-06 46.0 2.5 25 346-370 22-46 (195)
342 1fzq_A ADP-ribosylation factor 87.8 0.19 6.4E-06 46.4 1.9 24 347-370 16-39 (181)
343 2gf9_A RAS-related protein RAB 87.8 0.21 7.1E-06 46.3 2.2 24 347-370 22-45 (189)
344 2b6h_A ADP-ribosylation factor 87.8 0.19 6.4E-06 47.0 1.9 24 346-369 28-51 (192)
345 3fvq_A Fe(3+) IONS import ATP- 87.6 0.18 6.1E-06 52.4 1.7 25 348-372 31-55 (359)
346 3e2i_A Thymidine kinase; Zn-bi 87.6 0.91 3.1E-05 43.3 6.5 83 350-436 31-128 (219)
347 1z47_A CYSA, putative ABC-tran 87.5 0.2 6.7E-06 52.1 2.0 25 348-372 42-66 (355)
348 1sq5_A Pantothenate kinase; P- 87.5 0.2 6.8E-06 51.0 2.0 25 348-372 81-105 (308)
349 2q3h_A RAS homolog gene family 87.5 0.21 7.3E-06 46.7 2.1 25 345-369 18-42 (201)
350 3tkl_A RAS-related protein RAB 87.5 0.21 7.3E-06 46.3 2.1 24 347-370 16-39 (196)
351 3fdi_A Uncharacterized protein 87.5 0.28 9.5E-06 46.5 2.9 30 348-377 7-36 (201)
352 3d31_A Sulfate/molybdate ABC t 87.4 0.21 7.1E-06 51.8 2.1 25 348-372 27-51 (348)
353 2fh5_B SR-beta, signal recogni 87.4 0.23 7.9E-06 47.0 2.3 24 347-370 7-30 (214)
354 2zts_A Putative uncharacterize 87.3 0.25 8.5E-06 48.0 2.5 24 345-368 28-51 (251)
355 2fg5_A RAB-22B, RAS-related pr 87.3 0.21 7.2E-06 46.5 1.9 24 347-370 23-46 (192)
356 1nlf_A Regulatory protein REPA 87.3 0.21 7.1E-06 49.9 2.0 24 347-370 30-53 (279)
357 3dz8_A RAS-related protein RAB 87.2 0.22 7.4E-06 46.3 1.9 26 346-371 22-47 (191)
358 1zbd_A Rabphilin-3A; G protein 87.2 0.21 7.1E-06 46.8 1.8 24 347-370 8-31 (203)
359 1rj9_A FTSY, signal recognitio 87.2 0.24 8.1E-06 50.4 2.3 25 347-371 102-126 (304)
360 2a5j_A RAS-related protein RAB 87.2 0.24 8E-06 46.1 2.2 24 347-370 21-44 (191)
361 1p9r_A General secretion pathw 87.2 0.24 8.1E-06 52.7 2.4 25 348-372 168-192 (418)
362 2zu0_C Probable ATP-dependent 87.1 0.21 7.2E-06 49.7 1.9 24 348-371 47-70 (267)
363 2bcg_Y Protein YP2, GTP-bindin 87.1 0.22 7.5E-06 46.9 1.9 24 347-370 8-31 (206)
364 2d2e_A SUFC protein; ABC-ATPas 87.1 0.24 8E-06 48.8 2.2 24 347-370 29-52 (250)
365 2f1r_A Molybdopterin-guanine d 87.1 0.19 6.6E-06 46.4 1.4 24 349-372 4-27 (171)
366 2yyz_A Sugar ABC transporter, 87.0 0.23 7.9E-06 51.6 2.2 25 348-372 30-54 (359)
367 2cjw_A GTP-binding protein GEM 87.0 0.25 8.5E-06 46.2 2.2 22 348-369 7-28 (192)
368 2og2_A Putative signal recogni 87.0 0.6 2.1E-05 48.5 5.3 28 344-371 154-181 (359)
369 3lxx_A GTPase IMAP family memb 87.0 0.21 7.3E-06 48.5 1.8 25 346-370 28-52 (239)
370 2h17_A ADP-ribosylation factor 86.9 0.19 6.4E-06 46.3 1.3 25 346-370 20-44 (181)
371 1v5w_A DMC1, meiotic recombina 86.9 0.28 9.7E-06 50.7 2.8 25 346-370 121-145 (343)
372 1z6t_A APAF-1, apoptotic prote 86.9 0.41 1.4E-05 53.2 4.4 47 313-369 123-169 (591)
373 1c9k_A COBU, adenosylcobinamid 86.9 0.27 9.3E-06 45.7 2.3 25 350-375 2-26 (180)
374 3a43_A HYPD, hydrogenase nicke 86.8 0.38 1.3E-05 42.6 3.2 55 141-200 63-129 (139)
375 1odf_A YGR205W, hypothetical 3 86.8 0.25 8.6E-06 49.8 2.3 26 348-373 32-57 (290)
376 3llu_A RAS-related GTP-binding 86.8 0.21 7.3E-06 46.7 1.7 24 346-369 19-42 (196)
377 2z43_A DNA repair and recombin 86.8 0.25 8.7E-06 50.6 2.3 26 346-371 106-131 (324)
378 2kdx_A HYPA, hydrogenase/ureas 86.8 0.27 9.3E-06 42.4 2.1 50 134-197 59-109 (119)
379 2it1_A 362AA long hypothetical 86.8 0.24 8.4E-06 51.5 2.2 25 348-372 30-54 (362)
380 1qhl_A Protein (cell division 86.8 0.21 7.3E-06 48.3 1.6 23 350-372 30-52 (227)
381 1v43_A Sugar-binding transport 86.7 0.24 8.3E-06 51.8 2.2 25 348-372 38-62 (372)
382 2j0v_A RAC-like GTP-binding pr 86.7 0.29 9.8E-06 46.3 2.6 25 346-370 8-32 (212)
383 3rlf_A Maltose/maltodextrin im 86.7 0.25 8.5E-06 51.7 2.2 25 348-372 30-54 (381)
384 1pui_A ENGB, probable GTP-bind 86.6 0.15 5.1E-06 48.2 0.4 25 346-370 25-49 (210)
385 1g5t_A COB(I)alamin adenosyltr 86.6 0.21 7.1E-06 47.1 1.4 57 409-493 120-179 (196)
386 1nij_A Hypothetical protein YJ 86.5 0.49 1.7E-05 48.3 4.3 23 349-371 6-28 (318)
387 2ew1_A RAS-related protein RAB 86.5 0.25 8.6E-06 46.6 1.9 24 347-370 26-49 (201)
388 1g29_1 MALK, maltose transport 86.4 0.25 8.6E-06 51.7 2.1 25 348-372 30-54 (372)
389 3cr8_A Sulfate adenylyltranfer 86.4 0.25 8.5E-06 54.5 2.1 26 347-372 369-394 (552)
390 1gwn_A RHO-related GTP-binding 86.4 0.25 8.6E-06 46.7 1.9 24 347-370 28-51 (205)
391 2zr9_A Protein RECA, recombina 86.3 0.36 1.2E-05 50.0 3.3 23 348-370 62-84 (349)
392 3cbq_A GTP-binding protein REM 86.3 0.21 7.2E-06 46.8 1.3 22 347-368 23-44 (195)
393 2il1_A RAB12; G-protein, GDP, 86.2 0.25 8.7E-06 46.0 1.8 23 347-369 26-48 (192)
394 2qm8_A GTPase/ATPase; G protei 86.2 0.24 8.3E-06 51.1 1.8 24 348-371 56-79 (337)
395 1oxx_K GLCV, glucose, ABC tran 86.2 0.22 7.7E-06 51.7 1.5 25 348-372 32-56 (353)
396 2x77_A ADP-ribosylation factor 86.1 0.19 6.7E-06 46.5 0.9 22 347-368 22-43 (189)
397 3nh6_A ATP-binding cassette SU 86.1 0.23 7.9E-06 50.5 1.5 29 344-372 77-105 (306)
398 3io5_A Recombination and repai 86.0 0.3 1E-05 49.6 2.4 23 344-368 27-49 (333)
399 3lxw_A GTPase IMAP family memb 86.0 0.26 8.9E-06 48.3 1.9 25 346-370 20-44 (247)
400 2fu5_C RAS-related protein RAB 86.0 0.17 5.9E-06 46.4 0.5 23 347-369 8-30 (183)
401 2bbs_A Cystic fibrosis transme 86.0 0.23 7.8E-06 50.1 1.4 28 345-372 62-89 (290)
402 2h57_A ADP-ribosylation factor 85.9 0.22 7.4E-06 46.2 1.2 25 346-370 20-44 (190)
403 1f6b_A SAR1; gtpases, N-termin 85.9 0.23 8E-06 46.6 1.4 22 348-369 26-47 (198)
404 1tq4_A IIGP1, interferon-induc 85.8 0.45 1.5E-05 50.4 3.7 24 348-371 70-93 (413)
405 2o52_A RAS-related protein RAB 85.8 0.27 9.1E-06 46.2 1.8 23 347-369 25-47 (200)
406 2i1q_A DNA repair and recombin 85.8 0.3 1E-05 49.9 2.3 26 345-370 96-121 (322)
407 2pjz_A Hypothetical protein ST 85.8 0.23 7.7E-06 49.4 1.3 24 348-371 31-54 (263)
408 3e70_C DPA, signal recognition 85.8 0.31 1.1E-05 50.1 2.3 25 347-371 129-153 (328)
409 4gzl_A RAS-related C3 botulinu 85.8 0.29 1E-05 46.1 2.0 23 347-369 30-52 (204)
410 1x6v_B Bifunctional 3'-phospho 85.6 0.42 1.4E-05 53.4 3.4 31 348-378 53-86 (630)
411 3lda_A DNA repair protein RAD5 85.6 0.31 1.1E-05 51.5 2.3 24 345-368 176-199 (400)
412 2j1l_A RHO-related GTP-binding 85.5 0.28 9.7E-06 46.6 1.8 23 347-369 34-56 (214)
413 2yhs_A FTSY, cell division pro 85.5 0.79 2.7E-05 49.5 5.4 28 344-371 290-317 (503)
414 2fv8_A H6, RHO-related GTP-bin 85.5 0.29 9.8E-06 46.2 1.8 24 347-370 25-48 (207)
415 2f7s_A C25KG, RAS-related prot 85.5 0.3 1E-05 46.3 2.0 23 347-369 25-47 (217)
416 2gco_A H9, RHO-related GTP-bin 85.5 0.29 1E-05 45.9 1.8 24 347-370 25-48 (201)
417 2atx_A Small GTP binding prote 85.5 0.3 1E-05 45.4 1.9 24 347-370 18-41 (194)
418 4bas_A ADP-ribosylation factor 85.4 0.29 9.8E-06 45.5 1.8 24 346-369 16-39 (199)
419 2qag_B Septin-6, protein NEDD5 85.4 0.22 7.4E-06 53.0 1.0 22 349-370 44-65 (427)
420 1bif_A 6-phosphofructo-2-kinas 85.3 0.32 1.1E-05 52.6 2.3 25 347-371 39-63 (469)
421 2a5y_B CED-4; apoptosis; HET: 85.3 0.45 1.5E-05 52.6 3.6 44 317-369 131-174 (549)
422 2hup_A RAS-related protein RAB 85.3 0.31 1.1E-05 45.8 1.9 24 347-370 29-52 (201)
423 3k53_A Ferrous iron transport 85.2 0.29 9.9E-06 48.7 1.8 23 348-370 4-26 (271)
424 2gk6_A Regulator of nonsense t 85.1 0.52 1.8E-05 53.0 4.0 21 349-369 197-217 (624)
425 2hjg_A GTP-binding protein ENG 85.1 2.1 7.2E-05 45.6 8.6 23 347-369 175-197 (436)
426 2g3y_A GTP-binding protein GEM 85.0 0.33 1.1E-05 46.3 2.0 23 347-369 37-59 (211)
427 1f2t_A RAD50 ABC-ATPase; DNA d 85.0 0.35 1.2E-05 43.4 2.0 22 350-371 26-47 (149)
428 1xjc_A MOBB protein homolog; s 85.0 0.35 1.2E-05 44.5 2.1 23 349-371 6-28 (169)
429 1p5z_B DCK, deoxycytidine kina 85.0 0.2 6.8E-06 49.6 0.4 26 347-372 24-49 (263)
430 2qnr_A Septin-2, protein NEDD5 84.9 0.28 9.5E-06 49.8 1.5 22 348-369 19-40 (301)
431 1np6_A Molybdopterin-guanine d 84.8 0.39 1.3E-05 44.4 2.3 24 348-371 7-30 (174)
432 3a1s_A Iron(II) transport prot 84.8 0.31 1.1E-05 48.2 1.7 22 348-369 6-27 (258)
433 3gd7_A Fusion complex of cysti 84.6 0.28 9.6E-06 51.6 1.4 26 347-372 47-72 (390)
434 3cpj_B GTP-binding protein YPT 84.5 0.37 1.3E-05 46.1 2.1 24 347-370 13-36 (223)
435 2hf9_A Probable hydrogenase ni 84.5 0.38 1.3E-05 46.0 2.2 24 348-371 39-62 (226)
436 4ag6_A VIRB4 ATPase, type IV s 84.4 0.4 1.4E-05 50.5 2.5 26 345-370 33-58 (392)
437 1u94_A RECA protein, recombina 84.3 0.56 1.9E-05 48.7 3.5 24 347-370 63-86 (356)
438 2axn_A 6-phosphofructo-2-kinas 84.2 0.37 1.3E-05 52.8 2.2 24 348-371 36-59 (520)
439 2ocp_A DGK, deoxyguanosine kin 84.2 0.55 1.9E-05 45.6 3.2 25 348-372 3-27 (241)
440 2j9r_A Thymidine kinase; TK1, 84.1 1.8 6.2E-05 41.2 6.7 25 410-434 102-126 (214)
441 2qu8_A Putative nucleolar GTP- 84.1 0.38 1.3E-05 46.2 2.0 23 347-369 29-51 (228)
442 2xtp_A GTPase IMAP family memb 83.8 0.38 1.3E-05 47.3 1.9 23 347-369 22-44 (260)
443 2wjy_A Regulator of nonsense t 83.8 0.57 1.9E-05 54.2 3.6 21 349-369 373-393 (800)
444 3tui_C Methionine import ATP-b 83.7 0.41 1.4E-05 49.7 2.2 25 348-372 55-79 (366)
445 2yc2_C IFT27, small RAB-relate 83.6 0.22 7.4E-06 46.8 -0.0 24 347-370 20-43 (208)
446 2orv_A Thymidine kinase; TP4A 83.5 2.4 8.2E-05 40.9 7.3 24 410-435 91-114 (234)
447 2npi_A Protein CLP1; CLP1-PCF1 83.5 0.45 1.6E-05 51.2 2.5 24 348-371 139-162 (460)
448 1g8f_A Sulfate adenylyltransfe 83.5 0.48 1.6E-05 51.6 2.7 26 348-373 396-421 (511)
449 2wsm_A Hydrogenase expression/ 83.4 0.41 1.4E-05 45.6 1.9 24 348-371 31-54 (221)
450 4dkx_A RAS-related protein RAB 83.4 0.47 1.6E-05 45.5 2.3 22 348-369 14-35 (216)
451 3th5_A RAS-related C3 botulinu 83.8 0.23 7.8E-06 46.7 0.0 23 347-369 30-52 (204)
452 3r7w_A Gtpase1, GTP-binding pr 83.3 0.43 1.5E-05 48.5 2.0 22 348-369 4-25 (307)
453 2qag_C Septin-7; cell cycle, c 83.1 0.35 1.2E-05 51.4 1.4 24 348-371 32-55 (418)
454 3hdt_A Putative kinase; struct 83.1 0.51 1.8E-05 45.5 2.4 30 348-377 15-44 (223)
455 2px0_A Flagellar biosynthesis 83.1 0.46 1.6E-05 48.0 2.2 25 347-371 105-129 (296)
456 3b1v_A Ferrous iron uptake tra 83.0 0.44 1.5E-05 47.5 2.0 23 348-370 4-26 (272)
457 2www_A Methylmalonic aciduria 82.8 0.5 1.7E-05 48.9 2.4 24 347-370 74-97 (349)
458 1u0l_A Probable GTPase ENGC; p 82.7 0.38 1.3E-05 48.7 1.4 25 348-372 170-194 (301)
459 2vp4_A Deoxynucleoside kinase; 82.7 0.53 1.8E-05 45.5 2.4 23 348-370 21-43 (230)
460 3bh0_A DNAB-like replicative h 82.6 0.6 2.1E-05 47.6 2.9 22 348-369 69-90 (315)
461 1zu4_A FTSY; GTPase, signal re 82.6 1.7 5.8E-05 44.3 6.2 27 345-371 103-129 (320)
462 3iby_A Ferrous iron transport 82.3 0.45 1.5E-05 46.9 1.7 22 349-370 3-24 (256)
463 1a7j_A Phosphoribulokinase; tr 82.2 0.24 8.3E-06 49.9 -0.3 25 348-372 6-30 (290)
464 3b0c_T CENP-T, centromere prot 82.1 4.9 0.00017 33.9 7.9 66 525-608 7-72 (111)
465 3i8s_A Ferrous iron transport 82.1 0.47 1.6E-05 47.3 1.8 23 348-370 4-26 (274)
466 4edh_A DTMP kinase, thymidylat 82.0 0.56 1.9E-05 44.9 2.2 25 348-372 7-31 (213)
467 2dpy_A FLII, flagellum-specifi 82.0 0.62 2.1E-05 49.8 2.8 26 348-373 158-183 (438)
468 3t5d_A Septin-7; GTP-binding p 81.9 0.44 1.5E-05 47.4 1.5 22 347-368 8-29 (274)
469 2rcn_A Probable GTPase ENGC; Y 81.9 0.52 1.8E-05 48.9 2.0 25 348-372 216-240 (358)
470 4dhe_A Probable GTP-binding pr 81.8 0.41 1.4E-05 45.5 1.2 23 347-369 29-51 (223)
471 1tf7_A KAIC; homohexamer, hexa 81.7 0.61 2.1E-05 51.2 2.6 27 345-371 279-305 (525)
472 2obl_A ESCN; ATPase, hydrolase 81.6 0.63 2.2E-05 48.1 2.6 26 348-373 72-97 (347)
473 2yv5_A YJEQ protein; hydrolase 81.3 0.58 2E-05 47.4 2.1 24 348-372 166-189 (302)
474 3lv8_A DTMP kinase, thymidylat 81.0 0.62 2.1E-05 45.3 2.1 24 348-371 28-51 (236)
475 1ku5_A HPHA, archaeal histon; 80.8 6.4 0.00022 30.0 7.5 64 525-606 6-69 (70)
476 3llm_A ATP-dependent RNA helic 80.7 0.99 3.4E-05 43.6 3.5 20 348-367 77-96 (235)
477 1xp8_A RECA protein, recombina 80.7 0.86 3E-05 47.4 3.3 23 348-370 75-97 (366)
478 2qtf_A Protein HFLX, GTP-bindi 80.6 0.61 2.1E-05 48.6 2.1 26 345-370 176-202 (364)
479 1m8p_A Sulfate adenylyltransfe 80.5 0.71 2.4E-05 51.2 2.7 25 348-372 397-421 (573)
480 1taf_B TFIID TBP associated fa 80.4 8.8 0.0003 29.3 8.0 65 524-606 5-69 (70)
481 2va8_A SSO2462, SKI2-type heli 80.4 2.2 7.7E-05 48.5 7.0 18 348-365 47-64 (715)
482 2v6i_A RNA helicase; membrane, 80.4 0.43 1.5E-05 51.0 0.8 17 348-364 3-19 (431)
483 4djt_A GTP-binding nuclear pro 80.3 0.29 9.8E-06 46.5 -0.6 23 347-369 11-33 (218)
484 4i1u_A Dephospho-COA kinase; s 80.1 0.88 3E-05 43.3 2.8 31 348-379 10-40 (210)
485 2r6a_A DNAB helicase, replicat 80.0 0.84 2.9E-05 49.1 3.0 23 348-370 204-226 (454)
486 1ni3_A YCHF GTPase, YCHF GTP-b 80.0 0.72 2.5E-05 48.5 2.4 26 344-369 17-42 (392)
487 3v9p_A DTMP kinase, thymidylat 79.8 0.55 1.9E-05 45.4 1.3 25 348-372 26-50 (227)
488 3tmk_A Thymidylate kinase; pho 79.7 0.7 2.4E-05 44.3 2.0 26 348-373 6-31 (216)
489 3euj_A Chromosome partition pr 79.6 0.71 2.4E-05 49.9 2.2 25 348-372 30-54 (483)
490 1h65_A Chloroplast outer envel 79.5 0.66 2.3E-05 46.0 1.8 23 347-369 39-61 (270)
491 1tf7_A KAIC; homohexamer, hexa 79.5 0.74 2.5E-05 50.6 2.4 25 347-371 39-65 (525)
492 3kl4_A SRP54, signal recogniti 79.4 0.74 2.5E-05 49.0 2.3 25 347-371 97-121 (433)
493 3qks_A DNA double-strand break 79.3 0.74 2.5E-05 43.6 2.0 23 349-371 25-47 (203)
494 2qag_A Septin-2, protein NEDD5 79.3 0.67 2.3E-05 48.2 1.9 22 348-369 38-59 (361)
495 2xzl_A ATP-dependent helicase 79.2 1.1 3.8E-05 51.8 3.8 20 349-368 377-396 (802)
496 3ice_A Transcription terminati 79.1 0.88 3E-05 47.5 2.6 24 348-371 175-198 (422)
497 1ega_A Protein (GTP-binding pr 79.1 0.7 2.4E-05 46.7 1.9 23 348-370 9-31 (301)
498 1yqt_A RNAse L inhibitor; ATP- 79.0 0.75 2.6E-05 50.6 2.3 27 345-371 45-71 (538)
499 3gj0_A GTP-binding nuclear pro 79.0 0.59 2E-05 44.4 1.3 24 346-369 14-38 (221)
500 1t9h_A YLOQ, probable GTPase E 79.0 0.43 1.5E-05 48.4 0.3 23 348-370 174-196 (307)
No 1
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.2e-91 Score=788.32 Aligned_cols=574 Identities=33% Similarity=0.538 Sum_probs=506.8
Q ss_pred HHHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhcccCHHHHHHHHhChHHHHHHHHHHHHHHHHH
Q 006051 8 AHLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKI 79 (663)
Q Consensus 8 ~~~~~f~~Fl~~~--------~~~~i~~~~~~~~~~~~~~l~Vd~~~L~~~dp~La~~l~~~P~~~l~~~~~a~~~~~~~ 79 (663)
+..++|++||++| |.++|++|+.. ..++|.||++||.+|||+|++.|+++|.+++++|++|++++...
T Consensus 3 ~~~~~f~~Fl~~~~~~~~~~~y~~~i~~~~~~----~~~~l~v~~~~l~~~~~~l~~~l~~~p~~~~~~~~~a~~~~~~~ 78 (595)
T 3f9v_A 3 DYRDVFIEFLTTFKGNNNQNKYIERINELVAY----RKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQ 78 (595)
T ss_dssp CHHHHHHHHHHHCCTTTTSCTTHHHHHHHHHH----TCSSCCEEHHHHHTTCTTHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCChhHHHHHHHHHHc----CCcEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHHHHh
Confidence 4567899999998 99999999775 35789999999999999999999999999999999999987653
Q ss_pred HhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEeeEEEEecCceeEEEEEEEEecC--CCCe
Q 006051 80 VFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRK--CKHM 157 (663)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C~~--C~~~ 157 (663)
.+.. .....+.+++|+. + +| ...++|++++.++||||+|+|+|+|+|.|+|++.+++|.|.+ ||+.
T Consensus 79 ~~~~-----~~~~~~~~~v~~~--~----~~-~~~~~r~l~~~~i~~lv~v~G~V~r~s~v~~~~~~~~~~C~~~~C~~~ 146 (595)
T 3f9v_A 79 LDPT-----YQRDIEKVHVRIV--G----IP-RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQE 146 (595)
T ss_dssp HCGG-----GTTTCCCCCCCEE--C----CS-CEECGGGCCGGGTTCCEEEEEEEEEECCCEEEEEECCCEEESSSCCCB
T ss_pred hchh-----hhhccceEEEEEe--C----CC-CCCChhhcchhhCCcEEEEEEEEEEecCEEEEEEEEEEEecCCCCCCE
Confidence 2211 1112235788887 3 34 346789999999999999999999999999999999999999 9988
Q ss_pred eeecccccccccccCCCCCCCCCCCCCCCC-ceEEecCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcccceee
Q 006051 158 FPVYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKA 236 (663)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~-~f~~~~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~~p 236 (663)
+.+..+....+.+..|..||+ |+++ +|.++.+.|.|+|||+|+|||.|+.+|.|++||+++|+|++||||.|+|
T Consensus 147 ~~~~~~~~~~~~~~~p~~C~~-----C~~~~~~~~~~~~s~~~d~Q~i~iQe~~~~~~~g~~pr~~~v~l~~dlv~~~~p 221 (595)
T 3f9v_A 147 FEWPEDEEMPEVLEMPTICPK-----CGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARP 221 (595)
T ss_dssp CCSSCSSCCCSSCCCCSSCTT-----TCCCSEEECCSTTCEEEEEEEEEEECCTTTSCTTSCCCEEEEEEEGGGTTCSCS
T ss_pred EEEEeccccCCcccCCCcCCC-----CCCCCceEEeccCceeeeeEEEEEEeccccCCCCCCCceEEEEEeccccccccc
Confidence 765432223567889999984 8776 7999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEEeeecCCCC-cCcccccceEEEeeeeeeccccccCCCCCHHHHHHHHHHHHhhcCCchhhHHHHhhccccc
Q 006051 237 GDDVIVTGILTAKWSPDL-KDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQ 315 (663)
Q Consensus 237 Gd~V~v~GIl~~~~~~~~-~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~ 315 (663)
||+|.|+||++..|.... .+.++.++++++|++|+..+.......+++++++.+.++++. + ..++.+.++++|.
T Consensus 222 Gd~v~v~Gi~~~~~~~~~~~~~~~~~~~~i~a~~i~~~~~~~~~~~~t~~~~~~i~~~~~~----~-~~~~~l~~~l~~~ 296 (595)
T 3f9v_A 222 GDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQKVLDEVIISEEDEKKIKDLAKD----P-WIRDRIISSIAPS 296 (595)
T ss_dssp SCEEEEEEECCCCCSSTTSCTTCCCCCCCCEEEEEEECCCCCCCCCCTTSTHHHHHTTSST----T-TGGGTHHHHTSST
T ss_pred CCEEEEEEEEEecccccccCCCcceEEEEEEEEeecccccccccCCCCHHHHHHHHHHhhC----c-HHHHHHHHhhcch
Confidence 999999999999876532 234567999999999998777666778999988888776532 2 2457899999999
Q ss_pred cCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecC
Q 006051 316 VFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDG 395 (663)
Q Consensus 316 i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~ 395 (663)
|+|++.+|+++++++++|.++...+ .+.|++.|+||+||||||||++|+++++.++++.+..+.+.+.++++....++.
T Consensus 297 I~G~e~vk~al~~~l~~g~~~~~~~-~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~ 375 (595)
T 3f9v_A 297 IYGHWELKEALALALFGGVPKVLED-TRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREK 375 (595)
T ss_dssp TSCCHHHHHHHTTTTTCCCCEETTT-TEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGG
T ss_pred hcChHHHHHHHHHHHhCCCcccccC-CCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeecc
Confidence 9999999999999999998887777 889999999999999999999999999999999998887788889998877653
Q ss_pred --chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccc
Q 006051 396 --GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLS 472 (663)
Q Consensus 396 --~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~ 472 (663)
+.+..++|.+.+|++||||||||++++++.+++|+++||+|.+++.++|....++++++|||||||. |+|++.....
T Consensus 376 ~~g~~~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~~G~~~~~~~~~ 455 (595)
T 3f9v_A 376 GTGEYYLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPKFGRYISERPVS 455 (595)
T ss_dssp GTSSCSEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCTTCCSCTTSCSC
T ss_pred ccccccccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCcCCccCcccCch
Confidence 7788889999999999999999999999999999999999999999999999999999999999997 8999888888
Q ss_pred cccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHH
Q 006051 473 VNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEK 552 (663)
Q Consensus 473 ~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~ 552 (663)
.|+.+++||++|||+++.+.+.++++ +..+++|++..+... .....++.+.|++|+.|++..+.|.++++|.+
T Consensus 456 ~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~------~~~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~ 528 (595)
T 3f9v_A 456 DNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGK------STKNIIDIDTLRKYIAYARKYVTPKITSEAKN 528 (595)
T ss_dssp TTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCC------SSSSTTCCTTTHHHHHHHHHHHCCCCCCCTHH
T ss_pred hccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhcc------ccccCCCHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 99999999999999999999999999 999999999887642 33467899999999999999899999999999
Q ss_pred HHHHHHHHHHhcccCC---CccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhh
Q 006051 553 VISSYYQLQRRSATQN---AARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTS 615 (663)
Q Consensus 553 ~l~~~y~~~r~~~~~~---~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~ 615 (663)
.|.+||..+|.....+ ++++|+|+|++++|+|+|+|++++++.|+.+|+.+|+++++.|+.+.
T Consensus 529 ~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~sl~~~ 594 (595)
T 3f9v_A 529 LITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLFLESV 594 (595)
T ss_dssp HHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999998765433 58999999999999999999999999999999999999999999774
No 2
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=100.00 E-value=3e-70 Score=579.99 Aligned_cols=403 Identities=26% Similarity=0.344 Sum_probs=339.4
Q ss_pred ccccccccCCCCCCCCCCCCCCCCceEEecCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCccc------ceeeC
Q 006051 164 LETRNSIVLPSHCPSQRSKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVD------IVKAG 237 (663)
Q Consensus 164 ~~~~~~~~~p~~Cp~~~~~~C~~~~f~~~~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~------~~~pG 237 (663)
++.-.....|..||..+.++|-. .|. -.+++.|.|||+|||||.|+++|.|++||+++|+|++|||| +|+||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~g~~~-~~~-r~~k~~~~d~Q~IkiQE~pe~~~~G~~Prsi~v~l~~dLvd~~~~~~~~~pG 158 (506)
T 3f8t_A 81 LRELVRTVAPDVEPRVRFRGLPH-RFR-RVERIRPMDGALISIEGVVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPG 158 (506)
T ss_dssp HHHHHHHHCTTSCCCEEEECCCG-GGS-SCSCCGGGTTCEEEEEEEEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTT
T ss_pred HHHHHHhhCCCCCcccccCCccc-ccc-hHhhccccccEEEEEecCcccCCCCCCCceEEEEecccccCcccccccccCC
Confidence 33334566799999644444431 222 23456789999999999999999999999999999999999 99999
Q ss_pred CEEEEEEEEeeecCCCCcCcccccceEEEeeeeeeccccccCCCCCHHHHHHHHHHHHhhcCCchhhHHHHhhccccccC
Q 006051 238 DDVIVTGILTAKWSPDLKDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWSEFKDTPLKGRNAILRGICPQVF 317 (663)
Q Consensus 238 d~V~v~GIl~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~si~p~i~ 317 (663)
|+|.|+||++.. +++||||+. ++......+++++.+.|+++++. ..++.|++|++| |+
T Consensus 159 d~V~v~GI~~~~--------------~l~a~~i~~-~~~~~~~~~t~ed~~~i~~l~~~------~~~~~l~~sIap-I~ 216 (506)
T 3f8t_A 159 LRVEILGIVRSA--------------TLDALEVHK-KDPIPEVHPDPAELEEFRELADK------DPLTTFARAIAP-LP 216 (506)
T ss_dssp CEEEEEEEEETT--------------EEEEEEEEE-ECSSCCCCCCHHHHHHHHHHHHS------CHHHHHHHHHCC-ST
T ss_pred CEEEEEEEEEEe--------------EEEEEEEEE-cCccccCCCCHHHHHHHHHHHHH------HHHHHHHHHhcc-cC
Confidence 999999999742 899999988 55556678999999999999863 246899999999 99
Q ss_pred chhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHH-HHhcCCceEEeCCCcccCCceEEEeecC-
Q 006051 318 GLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFA-AKLSNRSVITTGLGSTSAGLTVTAVKDG- 395 (663)
Q Consensus 318 G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~i-a~~~~~~~~~~~~~~~~~gl~~~~~~~~- 395 (663)
|++.+|+|++++|+||..+ .|+++||||+|+||| ||++|+++ ++++|+..++.+.+++..|++.+ .++.
T Consensus 217 G~e~vK~aLll~L~GG~~k-------~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s-~r~~t 287 (506)
T 3f8t_A 217 GAEEVGKMLALQLFSCVGK-------NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAV-LKEDR 287 (506)
T ss_dssp TCHHHHHHHHHHHTTCCSS-------GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEE-EEESS
T ss_pred CCHHHHHHHHHHHcCCccc-------cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEE-EEcCC
Confidence 9999999999999999554 789999999999999 99999999 99999999999888777788887 5543
Q ss_pred chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCcccccc
Q 006051 396 GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNT 475 (663)
Q Consensus 396 ~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~ 475 (663)
| |.+++|++++|++||||+|||++++++.|.+|+++||+|++++. |. .++++|+||||+||.++||+.++. .++
T Consensus 288 G-~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~--G~--~lparf~VIAA~NP~~~yd~~~s~-~~~ 361 (506)
T 3f8t_A 288 G-WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD--GI--ALNARCAVLAAINPGEQWPSDPPI-ARI 361 (506)
T ss_dssp S-EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET--TE--EEECCCEEEEEECCCC--CCSCGG-GGC
T ss_pred C-cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC--CE--EcCCCeEEEEEeCcccccCCCCCc-ccc
Confidence 6 99999999999999999999999999999999999999999887 66 899999999999998888888877 899
Q ss_pred CCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH-ccCCCccCHHHHHHH
Q 006051 476 TLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVK-GYFKPILTKEAEKVI 554 (663)
Q Consensus 476 ~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r-~~~~p~ls~ea~~~l 554 (663)
.|+++++||||+++.+.|.++.+.|.. .....++.+.|++|+.|+| .++.|.+++++.++|
T Consensus 362 ~Lp~alLDRFDLi~i~~d~pd~e~d~e------------------~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI 423 (506)
T 3f8t_A 362 DLDQDFLSHFDLIAFLGVDPRPGEPEE------------------QDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRL 423 (506)
T ss_dssp CSCHHHHTTCSEEEETTC--------------------------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHH
T ss_pred CCChHHhhheeeEEEecCCCChhHhhc------------------ccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHH
Confidence 999999999999999999998877631 1235689999999999999 788999999999999
Q ss_pred HHHHHHHHhccc------CCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhhhhhhhhhhHh
Q 006051 555 SSYYQLQRRSAT------QNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMTTSAIVDSVGN 623 (663)
Q Consensus 555 ~~~y~~~r~~~~------~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~~~~~~~~~~~ 623 (663)
.++|..+|.... ...+++|+|++++|+|+|+|+|+|++|+.|+++||.+|++|++.|+.+.+..+.+|.
T Consensus 424 ~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl~~~a~dp~tg~ 498 (506)
T 3f8t_A 424 EHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYLETAMQIPGGDE 498 (506)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHHHHhcCCCCCCe
Confidence 999999997421 146789999999999999999999999999999999999999999999998877764
No 3
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=100.00 E-value=3.1e-48 Score=396.49 Aligned_cols=259 Identities=24% Similarity=0.367 Sum_probs=204.4
Q ss_pred ChHHHHHHHHHHHHHH-hHHHHHHhhcCCCCCCceeEEEechhhcccCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhh
Q 006051 5 NVPAHLKALAEFVIRH-HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKIVFDE 83 (663)
Q Consensus 5 ~~~~~~~~f~~Fl~~~-~~~~i~~~~~~~~~~~~~~l~Vd~~~L~~~dp~La~~l~~~P~~~l~~~~~a~~~~~~~~~~~ 83 (663)
.-.+..++|++||++| |.++|++|+.+.. .+++|.||+.||.+|||+||+.|+++|.+++++|++|++++.+ +
T Consensus 10 ~~~~~~~~f~~Fl~~~~Y~~~i~~~~~~~~--~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~--~-- 83 (279)
T 1ltl_A 10 DKSKTLTKFEEFFSLQDYKDRVFEAIEKYP--NVRSIEVDYLDLEMFDPDLADLLIEKPDDVIRAAQQAIRNIDR--L-- 83 (279)
T ss_dssp CHHHHHHHHHHHTTSHHHHHHHHHHHHHTT--SCCEEEEEHHHHHHHCTTHHHHHHHSHHHHHHHHHHHHTTTCT--T--
T ss_pred ChHHHHHHHHHHhccchHHHHHHHHHhhCC--CCeEEEEEhHHHhhhCHHHHHHHHHCHHHHHHHHHHHHHHhcc--c--
Confidence 3456667899999998 9999999983211 3679999999999999999999999999999999999876421 1
Q ss_pred hhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEeeEEEEecCceeEEEEEEEEecCCCCeeeeccc
Q 006051 84 LKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMCRKCKHMFPVYPE 163 (663)
Q Consensus 84 ~~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C~~C~~~~~~~~~ 163 (663)
.... .+|||+. + +| ...++|+|++.++||||+|+|+|+|+|.|+|+++.++|.|.+||+.+.+..
T Consensus 84 ------~~~~-~~~vr~~--~----~~-~~~~iR~L~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~C~~~~~v~~- 148 (279)
T 1ltl_A 84 ------RKNV-DLNIRFS--G----IS-NVIPLRELRSKFIGKFVAVDGIVRKTDEIRPRIVKAVFECRGCMRHHAVTQ- 148 (279)
T ss_dssp ------CCCC-CCEEEEE--C----CS-CBCCGGGCCGGGTTSEEEEEEEEEEECCCEEEEEEEEEEETTTCCEEEEEC-
T ss_pred ------cCCe-eEEEEEE--C----CC-CCCCcccCChhhCCCEEEEEEEEEEecceEEEEEEEEEEcCCCCCEEEEEe-
Confidence 1112 6889987 3 33 346799999999999999999999999999999999999999998865443
Q ss_pred ccccccccCCCCCCCCCCCCCCCCceEEecCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcccceeeCCEEEEE
Q 006051 164 LETRNSIVLPSHCPSQRSKPCEGTNFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKAGDDVIVT 243 (663)
Q Consensus 164 ~~~~~~~~~p~~Cp~~~~~~C~~~~f~~~~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~~pGd~V~v~ 243 (663)
..+.+..|..||+ |++++|.++.+.|.|+|||+|||||.|+.+|.|++||+++|+|++||||+|+|||+|+||
T Consensus 149 --~~~~~~~P~~Cp~-----C~~~~f~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~V~l~~dLvd~~~PGDrV~vt 221 (279)
T 1ltl_A 149 --STNMITEPSLCSE-----CGGRSFRLLQDESEFLDTQTLKLQEPLENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVT 221 (279)
T ss_dssp --SSSSCCCCSCCTT-----TCCCCEEECGGGCEEEEEEEEEEECCSTTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEE
T ss_pred --cCCcccCCCcCCC-----CCCCCcEEeccccEEEeeEEEEEecCcccCCCCCCCeEEEEEEcccccCccCCCCEEEEE
Confidence 2457888999984 888789999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecCCCCcCcccccceEEEeeeeeeccccccCCCCCHHHHHHHHHHHH
Q 006051 244 GILTAKWSPDLKDVRCDLDPVLIANHVRRTNELKSDIDIPDDIIMQFKQFWS 295 (663)
Q Consensus 244 GIl~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (663)
||++..|. +..+.++++++||||+..++......+|++++++|+++.+
T Consensus 222 GI~~~~~~----~~~~~~~~~l~a~~I~~~~~~~~~~~~t~ed~~~i~~ls~ 269 (279)
T 1ltl_A 222 GTLRTVRD----ERTKRFKNFIYGNYTEFLEQEFEELQISEEDEEKIKELAG 269 (279)
T ss_dssp EEEEEEEE----TTTTEEEEEEEEEECCBC----------------------
T ss_pred EEEEEeeC----CCCceEEEEEEEEEEEEecCccccCCCCHHHHHHHHHHhc
Confidence 99998873 3346799999999999877766667899999999988754
No 4
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-46 Score=382.62 Aligned_cols=247 Identities=23% Similarity=0.369 Sum_probs=210.5
Q ss_pred HHHHHHHHHHHHH--------hHHHHHHhhcCCCCCCceeEEEechhhcccCHHHHHHHHhChHHHHHHHHHHHHHHHHH
Q 006051 8 AHLKALAEFVIRH--------HSDQLRSITLSPDPKLHYPLYIDFAELLDEDPEIAHLVFSKPADYLRFFEDAAIWAHKI 79 (663)
Q Consensus 8 ~~~~~f~~Fl~~~--------~~~~i~~~~~~~~~~~~~~l~Vd~~~L~~~dp~La~~l~~~P~~~l~~~~~a~~~~~~~ 79 (663)
+..++|++||.+| |.++|++++.. .+++|.||++||.+|||+||+.|+++|.+++++|++|+.+++..
T Consensus 9 ~~~~~f~~Fl~~f~~~~~~~~Y~~~i~~~~~~----~~~~l~Vd~~dL~~~~~~La~~l~~~P~~~l~~~~~a~~~~~~~ 84 (268)
T 2vl6_A 9 DYRDVFIEFLTTFKGNNNQNKYIERINELVAY----RKKSLIIEFSDVLSFNENLAYEIINNTKIILPILEGALYDHILQ 84 (268)
T ss_dssp CHHHHHHHHHHHCCCSSSSCTTHHHHHHHHHT----TCCCEEEEHHHHHHHCHHHHHHHHHHTTTTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhcccCchHHHHHHHHHHHc----CCcEEEEEHHHHHhhhHHHHHHHHHCHHHHHHHHHHHHHHHHHH
Confidence 5668899999998 89999999875 36799999999999999999999999999999999999987653
Q ss_pred HhhhhhhhhhhcccceEEEEEeeCCCCCCCCCCCcccccccccCCCcEEEEeeEEEEecCceeEEEEEEEEe--cCCCCe
Q 006051 80 VFDELKSCEKRVEKKFIHVRINVSGSPLECPETFPSIGRVRVKHHGVLLTLKGTVIRSGATKMYEGERTYMC--RKCKHM 157 (663)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~vri~~~~~p~~~p~~~~~ir~l~~~~igklv~i~G~V~r~s~vk~~~~~~~f~C--~~C~~~ 157 (663)
.... .....+.+|||+. + +| ...++|+|++.++||||+|+|+|+|+|.|+|+++.++|.| .+||+.
T Consensus 85 ~~~~-----~~~~~~~~~vr~~--~----~~-~~~~iR~l~~~~igkLV~v~GiV~r~S~V~p~~~~~~f~C~~~~C~~~ 152 (268)
T 2vl6_A 85 LDPT-----YQRDIEKVHVRIV--G----IP-RVIELRKIRSTDIGKLITIDGILVKVTPVKERIYKATYKHIHPDCMQE 152 (268)
T ss_dssp TCGG-----GTTTCSCCCEEEE--C----CS-CEECGGGCCGGGTTSEEEEEEEEEEECCCEEEEEECEEEEECTTCCCE
T ss_pred hCch-----hhccCccEEEEEE--C----CC-CCCccccCChhHCCCeEEEEEEEEEcCCcceEeEEEEEECCCCCCCCE
Confidence 2211 1123456899987 3 33 3457999999999999999999999999999999999999 999998
Q ss_pred eeecccccccccccCCCCCCCCCCCCCCCC-ceEEecCeeeEeeeeEEEEeecccccCCCCcceEEEEEEecCcccceee
Q 006051 158 FPVYPELETRNSIVLPSHCPSQRSKPCEGT-NFQFVENSIICHDYQEIKIQESTQVLGVGVIPRSILVILKDDLVDIVKA 236 (663)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~-~f~~~~~~s~~~d~Q~ikiQE~~~~~~~g~~Prsi~V~L~~dLv~~~~p 236 (663)
+.+....+..+.+..|..|| .|+++ +|.++.+.|.|+|||+|||||.|+.+|.|++||+++|+|++||||+|+|
T Consensus 153 ~~~~~~~~~~~~~~~P~~Cp-----~C~~~~~~~l~~~~s~f~D~Q~ikiQE~pe~vp~G~~Prsi~v~l~~dLvd~~~P 227 (268)
T 2vl6_A 153 FEWPEDEEMPEVLEMPTICP-----KCGKPGQFRLIPEKTKLIDWQKAVIQERPEEVPSGQLPRQLEIILEDDLVDSARP 227 (268)
T ss_dssp EESSTTSCCCTTCCCCSBCT-----TTCCBCEEEECGGGCEEEEEEEEEEECCGGGSCTTSCCCEEEEEEEGGGTTSSCT
T ss_pred EeeeecccCCCcccCCccCC-----CCCCCCCEEEecCccEEEeeEEEEEEeCCCCCCCCCCCcEEEEEEccCccCcccC
Confidence 76542113356788999998 48887 5999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEEEEeeecCCC-CcCcccccceEEEeeeeeeccc
Q 006051 237 GDDVIVTGILTAKWSPD-LKDVRCDLDPVLIANHVRRTNE 275 (663)
Q Consensus 237 Gd~V~v~GIl~~~~~~~-~~~~~~~~~~~~~a~~i~~~~~ 275 (663)
||+|+||||++..|... ..+.++.++++++||||+..++
T Consensus 228 GDrV~vtGI~~~~~~~~~~~~~~~~~~~yl~an~I~~~~~ 267 (268)
T 2vl6_A 228 GDRVKVTGILDIKQDSPVKRGSRAVFDIYMKVSSIEVSQK 267 (268)
T ss_dssp TCEEEEEEEEEEECSSTTCCSSCCEEEEEEEEEEEEEC--
T ss_pred CCEEEEEEEEEEeecccccCCCceEEEEEEEEEEEEEecc
Confidence 99999999999988652 3345678999999999987543
No 5
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.92 E-value=8.9e-24 Score=222.66 Aligned_cols=268 Identities=17% Similarity=0.155 Sum_probs=198.0
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCC--cc
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLG--ST 383 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~--~~ 383 (663)
..+..++.+.|+|++.++++++.++.+| .|+||+||||||||++|+++++.++.+++..... ..
T Consensus 19 ~~~~~~~~~~i~g~~~~~~~l~~~l~~~--------------~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~ 84 (331)
T 2r44_A 19 KEVIDEVGKVVVGQKYMINRLLIGICTG--------------GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLL 84 (331)
T ss_dssp HHHHHHHTTTCCSCHHHHHHHHHHHHHT--------------CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCC
T ss_pred HHHHHHhccceeCcHHHHHHHHHHHHcC--------------CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCC
Confidence 5677888999999999999999999875 6899999999999999999999998877654332 11
Q ss_pred cCCceEEEeec--CchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC
Q 006051 384 SAGLTVTAVKD--GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP 461 (663)
Q Consensus 384 ~~gl~~~~~~~--~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~ 461 (663)
...+......+ .+.+...+|.+ .++|+||||++.++++.++.|+++|+++.+++ .|.....+.++.+++|+||
T Consensus 85 ~~~l~g~~~~~~~~~~~~~~~g~l---~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~--~g~~~~~~~~~~viat~np 159 (331)
T 2r44_A 85 PSDLIGTMIYNQHKGNFEVKKGPV---FSNFILADEVNRSPAKVQSALLECMQEKQVTI--GDTTYPLDNPFLVLATQNP 159 (331)
T ss_dssp HHHHHEEEEEETTTTEEEEEECTT---CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEE--TTEEEECCSSCEEEEEECT
T ss_pred hhhcCCceeecCCCCceEeccCcc---cccEEEEEccccCCHHHHHHHHHHHhcCceee--CCEEEECCCCEEEEEecCC
Confidence 12222222222 13333344444 35899999999999999999999999998866 5777778899999999998
Q ss_pred CCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHcc
Q 006051 462 KGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGY 541 (663)
Q Consensus 462 ~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~ 541 (663)
..... ...++++|++||++.+.+..++.++...++. +...... .......++.+.+.......+
T Consensus 160 ~~~~~-------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~-~~~~~~~------~~~~~~~~~~~~i~~~~~~~~-- 223 (331)
T 2r44_A 160 VEQEG-------TYPLPEAQVDRFMMKIHLTYLDKESELEVMR-RVSNMNF------NYQVQKIVSKNDVLEIRNEIN-- 223 (331)
T ss_dssp TCCSC-------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHH-HHHCTTC------CCCCCCCSCHHHHHHHHHHHH--
T ss_pred CcccC-------cccCCHHHHhheeEEEEcCCCCHHHHHHHHH-hccccCc------chhccccCCHHHHHHHHHHhc--
Confidence 63211 1258899999999878775543333333333 3332211 112345577888877776664
Q ss_pred CCCccCHHHHHHHHHHHHHHHhcccC--------CCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHH
Q 006051 542 FKPILTKEAEKVISSYYQLQRRSATQ--------NAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 542 ~~p~ls~ea~~~l~~~y~~~r~~~~~--------~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~ 609 (663)
...+++++.+.+.+++...|..... ..+.+|+|.+.+++++|+++|.+++++.|+.+|+.+|+..+-
T Consensus 224 -~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 224 -KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp -TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred -cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 4578999999999998887764310 124578999999999999999999999999999999998753
No 6
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.90 E-value=6.4e-23 Score=225.29 Aligned_cols=266 Identities=18% Similarity=0.150 Sum_probs=183.8
Q ss_pred HHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC--ceEEeCCC-
Q 006051 305 RNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR--SVITTGLG- 381 (663)
Q Consensus 305 ~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~--~~~~~~~~- 381 (663)
++.+.+++.+.|+|++.++++++.++.+| .|+||+||||||||++|+++++.++. ++......
T Consensus 13 ~~~l~~~l~~~ivGq~~~i~~l~~al~~~--------------~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~ 78 (500)
T 3nbx_X 13 ISRLSSSLEKGLYERSHAIRLCLLAALSG--------------ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRF 78 (500)
T ss_dssp HHHHHHHHHTTCSSCHHHHHHHHHHHHHT--------------CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHhcC--------------CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhc
Confidence 35678889999999999999999999886 69999999999999999999998754 22222221
Q ss_pred cccCCceE----EEeecCchhH-hhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 382 STSAGLTV----TAVKDGGEWM-LEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 382 ~~~~gl~~----~~~~~~~~~~-~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
.+...+.. ......|.+. ...|. ++.++|+|||||++++++.++.|+++|+++.+++ .|.....+.++ +|
T Consensus 79 ~t~~dL~G~~~~~~~~~~g~~~~~~~g~--l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i--~G~~~~~~~~~-iI 153 (500)
T 3nbx_X 79 STPEEVFGPLSIQALKDEGRYERLTSGY--LPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN--GAHVEKIPMRL-LV 153 (500)
T ss_dssp CCHHHHHCCBC----------CBCCTTS--GGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC--SSSEEECCCCE-EE
T ss_pred CCHHHhcCcccHHHHhhchhHHhhhccC--CCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC--CCCcCCcchhh-hh
Confidence 11111111 1111111111 11222 2246689999999999999999999999999866 67777888886 67
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHH
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIY 536 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 536 (663)
+|||+... ...+.+++++||++.+.+..+...+.... |+..+..... ........++.+.+..+..
T Consensus 154 ~ATN~lpe---------~~~~~~aLldRF~~~i~v~~p~~~ee~~~----IL~~~~~~~~-~~~~~~~~~~~e~l~~~~~ 219 (500)
T 3nbx_X 154 AASNELPE---------ADSSLEALYDRMLIRLWLDKVQDKANFRS----MLTSQQDEND-NPVPDALQVTDEEYERWQK 219 (500)
T ss_dssp EEESSCCC---------TTCTTHHHHTTCCEEEECCSCCCHHHHHH----HHTCCCCTTS-CCSCTTTSBCHHHHHHHHH
T ss_pred hccccCCC---------ccccHHHHHHHHHHHHHHHHhhhhhhHHH----HHhcccccCC-CCCCccceecHHHHHHHHh
Confidence 78886311 12345799999987777744444233222 2322221111 1112345688999999988
Q ss_pred HHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 537 FVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 537 ~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
.++ ...+++++.+++.+.+...|.... ...+|.|.+++++++|+|+|.+++++.|+++|+..|...+
T Consensus 220 ~~~---~v~v~d~v~e~i~~l~~~lr~~r~--~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~~a~~vL 286 (500)
T 3nbx_X 220 EIG---EITLPDHVFELIFMLRQQLDKLPD--APYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLILLKDCL 286 (500)
T ss_dssp HHT---TCBCCHHHHHHHHHHHHHHHHCSS--SCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGGGGGGTS
T ss_pred cCC---cccCchHHHHHHHHHHHHhhcCCC--CCccchhHHHHHHHHHHHHHhhcCCccccchHHHHHHhhh
Confidence 876 456899999999888876655422 3457899999999999999999999999999999544443
No 7
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.89 E-value=1.2e-22 Score=215.47 Aligned_cols=265 Identities=22% Similarity=0.186 Sum_probs=186.8
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCC------------
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGL------------ 380 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~------------ 380 (663)
+.+|+|++.+++++..+++.+ ...|+||+||||||||++|+++++.+++..+..+.
T Consensus 23 f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~ 90 (350)
T 1g8p_A 23 FSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPD 90 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCT
T ss_pred chhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccc
Confidence 346899999999988777653 12579999999999999999999988753222110
Q ss_pred ---------------------CcccCCceEEEe-e---cCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHh
Q 006051 381 ---------------------GSTSAGLTVTAV-K---DGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQ 435 (663)
Q Consensus 381 ---------------------~~~~~gl~~~~~-~---~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~ 435 (663)
+.+...+..... . ..+.+...+|.+..+++||+||||++.++.+.++.|+++|++
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 91 WATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp TCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 000000110000 0 012234456777788899999999999999999999999999
Q ss_pred ceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCC
Q 006051 436 QTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSE 515 (663)
Q Consensus 436 ~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~ 515 (663)
+...+.+.|.....+.++.+|+|+|+.. ..+.++|++||++.+.+..+++.+.+..+..+.+.......
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~-----------~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~ 239 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPEE-----------GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPK 239 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSCS-----------CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHH
T ss_pred CceEEEecceEEeeCCceEEEEEeCCCC-----------CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCch
Confidence 9888888898888899999999999851 14667999999988888777676666555555433211000
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccC-CCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCC
Q 006051 516 EKDTEPLTDIWPLAMLRRYIYFVKGYF-KPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRN 594 (663)
Q Consensus 516 ~~~~~~~~~~~~~~~l~~~i~~~r~~~-~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~ 594 (663)
. ...........+++++.+++... ...+++++.+.|.+++...+. .++|.+.++++.|.++|.++.++
T Consensus 240 ~---~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~--------~~~R~~~~ll~~a~~~A~~~~~~ 308 (350)
T 1g8p_A 240 A---FLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGS--------DGLRGELTLLRSARALAALEGAT 308 (350)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSS--------CSHHHHHHHHHHHHHHHHHTTCS
T ss_pred h---hccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCC--------CCccHHHHHHHHHHHHHHHcCCC
Confidence 0 00000112345667776665432 236999999999988643321 15899999999999999999999
Q ss_pred ccChhhHHHHHHHHHhh
Q 006051 595 EVTRLDAITAILCIESS 611 (663)
Q Consensus 595 ~V~~~Dv~~Ai~l~~~s 611 (663)
.|+.+|+..|+.++...
T Consensus 309 ~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 309 AVGRDHLKRVATMALSH 325 (350)
T ss_dssp BCCHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHHhh
Confidence 99999999999887544
No 8
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.82 E-value=4.2e-20 Score=209.74 Aligned_cols=239 Identities=22% Similarity=0.227 Sum_probs=167.6
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCce----EEeCCCcc------
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSV----ITTGLGST------ 383 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~----~~~~~~~~------ 383 (663)
.+++|++.++..+..++..| .+++|+||||||||++|+++++..+... ...+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g--------------~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i 106 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQK--------------RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRI 106 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTT--------------CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEE
T ss_pred ceEECchhhHhhccccccCC--------------CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcE
Confidence 46899999999999999876 6899999999999999999999876432 00000000
Q ss_pred -------------------------------------------------c-----------CCceEEE---------eec
Q 006051 384 -------------------------------------------------S-----------AGLTVTA---------VKD 394 (663)
Q Consensus 384 -------------------------------------------------~-----------~gl~~~~---------~~~ 394 (663)
. ..+.... ...
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~ 186 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGT 186 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCC
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccc
Confidence 0 0000000 000
Q ss_pred CchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCc--------eeecCCcEEEEEeeCCCCCCC
Q 006051 395 GGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGL--------VTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 395 ~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~--------~~~~~~~~~iiaatN~~g~~d 466 (663)
+....+.+|.+..|++|++||||++.+++..++.|+++|+++.+.+...+. ....+.++.+|+|+|+..
T Consensus 187 g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~--- 263 (604)
T 3k1j_A 187 PAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDT--- 263 (604)
T ss_dssp CGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHH---
T ss_pred cccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHH---
Confidence 012234688899999999999999999999999999999999987652210 345678999999999850
Q ss_pred CCCccccccCCChhhhhhhhh---hhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHc---
Q 006051 467 PNLSLSVNTTLSGPLLSRFDI---VLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKG--- 540 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~RFdl---i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~--- 540 (663)
...+.++|++||+. .+.+.+.. + ...+.++.|+.+..+
T Consensus 264 -------~~~l~~~l~~R~~v~~i~i~l~~~~-~----------------------------~~~~~~~~~l~~~~~~~~ 307 (604)
T 3k1j_A 264 -------VDKMHPALRSRIRGYGYEVYMRTTM-P----------------------------DTIENRRKLVQFVAQEVK 307 (604)
T ss_dssp -------HHHSCHHHHHHHHHHSEEEECCSEE-E----------------------------CCHHHHHHHHHHHHHHHH
T ss_pred -------HhhcCHHHHHHhhccceEeeccccc-c----------------------------CCHHHHHHHHHHHHHHHh
Confidence 11467899999984 23221111 1 122333333333222
Q ss_pred --cCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHH
Q 006051 541 --YFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 541 --~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l 607 (663)
...+.++++|...|.+||. |....++..+.++|++.+++|.|.++|+++.++.|+.+|+..|+..
T Consensus 308 ~~~~~~~ls~eAl~~Li~~~~--r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 308 RDGKIPHFTKEAVEEIVREAQ--KRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp HHCSSCCBBHHHHHHHHHHHH--HTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred hccCcccCCHHHHHHHHHHHh--hhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 1346899999999998875 3333333567789999999999999999999999999999999964
No 9
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.76 E-value=1.7e-18 Score=179.74 Aligned_cols=212 Identities=19% Similarity=0.238 Sum_probs=138.7
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
+.+|||+||||||||++|+++++.+++ +++...++.....+..+.+++. |......|.+..|++|++||||
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDE 104 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDE 104 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---CCCCCHHHHHTTSEEEEES
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhhhhcCHHHhcCCCEEEEec
Confidence 478999999999999999999997753 4555444332211111111110 1122346778889999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhh-hhhcCCCC
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIV-LVLLDTKN 496 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli-~~l~d~~~ 496 (663)
++.++.+.+..|+++|+++.+ .+.|.....+.++.+|+|||+.- ........+.+.|++||..+ +.+++...
T Consensus 105 i~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~riI~atn~~l-----~~~v~~g~fr~~L~~Rl~~~~i~lPpL~e 177 (304)
T 1ojl_A 105 IGDISPLMQVRLLRAIQEREV--QRVGSNQTISVDVRLIAATHRDL-----AEEVSAGRFRQDLYYRLNVVAIEMPSLRQ 177 (304)
T ss_dssp CTTCCHHHHHHHHHHHHSSBC--CBTTBCCCCBCCCEEEEEESSCH-----HHHHHHTSSCHHHHHHHSSEEEECCCSGG
T ss_pred cccCCHHHHHHHHHHHhcCEe--eecCCcccccCCeEEEEecCccH-----HHHHHhCCcHHHHHhhcCeeEEeccCHHH
Confidence 999999999999999999876 56677777788999999999850 00011123456899999733 33322221
Q ss_pred hhH-HHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHh
Q 006051 497 PEW-DAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVR 575 (663)
Q Consensus 497 ~~~-d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R 575 (663)
... -..++.|++. ++..... .-.+.+++++.+.|..| +||+++|
T Consensus 178 R~edi~~l~~~~l~-----------------------~~~~~~~-~~~~~~s~~a~~~L~~~-----------~wpGnvR 222 (304)
T 1ojl_A 178 RREDIPLLADHFLR-----------------------RFAERNR-KVVKGFTPQAMDLLIHY-----------DWPGNIR 222 (304)
T ss_dssp GGGGHHHHHHHHHH-----------------------HHHHHTT-CCCCCBCHHHHHHHHHC-----------CCSSHHH
T ss_pred hHhhHHHHHHHHHH-----------------------HHHHHhc-cCccCCCHHHHHHHHcC-----------CCCCCHH
Confidence 111 1122222222 2211111 12357999999999988 7999999
Q ss_pred HHHHHHHHHHHHHhccCCCccChhhHHH
Q 006051 576 MLESLIRLAQAHARLMFRNEVTRLDAIT 603 (663)
Q Consensus 576 ~Le~lirla~a~A~l~~~~~V~~~Dv~~ 603 (663)
+|+++++.+...+. ...|+.+|+..
T Consensus 223 eL~~~l~~~~~~~~---~~~i~~~~l~~ 247 (304)
T 1ojl_A 223 ELENAIERAVVLLT---GEYISERELPL 247 (304)
T ss_dssp HHHHHHHHHHHHCC---SSSBCGGGSCG
T ss_pred HHHHHHHHHHHhCC---CCcccHHhhhh
Confidence 99999998877664 56788888753
No 10
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.74 E-value=1.7e-17 Score=174.96 Aligned_cols=222 Identities=20% Similarity=0.255 Sum_probs=153.0
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
..+++|++.+++.+...+...... -....++||+||||||||++|+++++..+.+++........
T Consensus 28 ~~~iiG~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~-------- 92 (338)
T 3pfi_A 28 FDGYIGQESIKKNLNVFIAAAKKR-------NECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE-------- 92 (338)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHHT-------TSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------
T ss_pred HHHhCChHHHHHHHHHHHHHHHhc-------CCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc--------
Confidence 347899999988887766542100 12236899999999999999999999988877664432210
Q ss_pred ecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccC------ceeecCCcEEEEEeeCCCCCCC
Q 006051 393 KDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAG------LVTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 393 ~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g------~~~~~~~~~~iiaatN~~g~~d 466 (663)
..+. ........+++|++||||++.++.+.+..|+.+|+++.+.+...+ ....++ ++.+|+|||..+
T Consensus 93 -~~~~--~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~atn~~~--- 165 (338)
T 3pfi_A 93 -KSGD--LAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLP-KFTLIGATTRAG--- 165 (338)
T ss_dssp -SHHH--HHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCC-CCEEEEEESCGG---
T ss_pred -chhH--HHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCC-CeEEEEeCCCcc---
Confidence 1111 111112347899999999999999999999999999876543221 111223 589999999863
Q ss_pred CCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCcc
Q 006051 467 PNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPIL 546 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~l 546 (663)
.+.++|++||+.++.+..++.++....+. .+ + ......+
T Consensus 166 ---------~l~~~L~~R~~~~i~l~~~~~~e~~~il~----------------------------~~---~-~~~~~~~ 204 (338)
T 3pfi_A 166 ---------MLSNPLRDRFGMQFRLEFYKDSELALILQ----------------------------KA---A-LKLNKTC 204 (338)
T ss_dssp ---------GSCHHHHTTCSEEEECCCCCHHHHHHHHH----------------------------HH---H-HHTTCEE
T ss_pred ---------ccCHHHHhhcCEEeeCCCcCHHHHHHHHH----------------------------HH---H-HhcCCCC
Confidence 35579999999888775543333222221 11 1 1223457
Q ss_pred CHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHH
Q 006051 547 TKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 547 s~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~ 609 (663)
++++.+.|... |++++|.+.++++.+...|.+.....|+.+|+..++....
T Consensus 205 ~~~~~~~l~~~------------~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~ 255 (338)
T 3pfi_A 205 EEKAALEIAKR------------SRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLG 255 (338)
T ss_dssp CHHHHHHHHHT------------TTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHH------------HCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhC
Confidence 88887777653 6788999999999998889888888999999998886543
No 11
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.73 E-value=4.9e-18 Score=176.48 Aligned_cols=266 Identities=17% Similarity=0.216 Sum_probs=162.7
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCC-C-CccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcc
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDAS-G-TKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST 383 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~-~-~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~ 383 (663)
+.+.+.+.+.|+|++.+|+++..++.....+.... + ...+.+.++||+||||||||++|+++++.++.+++.......
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~ 86 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF 86 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhc
Confidence 45667778899999999999998876521100000 0 001234789999999999999999999998887776544322
Q ss_pred cC-CceEEEeecC-chhH-hhhhhhhhc-cCCeeecccccccChhh------------HHhHHHHHHhceeeeeccCcee
Q 006051 384 SA-GLTVTAVKDG-GEWM-LEAGALVLA-DGGLCCIDEFDSMREHD------------RATIHEAMEQQTISVAKAGLVT 447 (663)
Q Consensus 384 ~~-gl~~~~~~~~-~~~~-~~~g~l~~a-~~gvl~iDEid~l~~~~------------~~~L~~~me~~~i~i~k~g~~~ 447 (663)
.. +......... .... ..+|.+..+ .++|+||||++++..+. ++.|+++|+.+.+.. +.+ .
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~-~~~--~ 163 (310)
T 1ofh_A 87 TEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHG--M 163 (310)
T ss_dssp SSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE-TTE--E
T ss_pred ccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEec-ccc--c
Confidence 11 1110000000 0000 112344443 47999999999998765 889999999876533 222 2
Q ss_pred ecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCC
Q 006051 448 TLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWP 527 (663)
Q Consensus 448 ~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~ 527 (663)
....++.+|+++|+... ....+.++|++||+.++.+..+..++....+. ....
T Consensus 164 ~~~~~~~~i~~~~~~~~--------~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~-----~~~~-------------- 216 (310)
T 1ofh_A 164 VKTDHILFIASGAFQVA--------RPSDLIPELQGRLPIRVELTALSAADFERILT-----EPHA-------------- 216 (310)
T ss_dssp EECTTCEEEEEECCSSS--------CGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH-----SSTT--------------
T ss_pred ccCCcEEEEEcCCcccC--------CcccCCHHHHhhCCceEEcCCcCHHHHHHHHH-----hhHH--------------
Confidence 23457788999875310 01257789999999778775555433333332 1110
Q ss_pred HHHHHHHHHHHH-ccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCC-----C-ccChhh
Q 006051 528 LAMLRRYIYFVK-GYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFR-----N-EVTRLD 600 (663)
Q Consensus 528 ~~~l~~~i~~~r-~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~-----~-~V~~~D 600 (663)
..++.|...++ ....+.+++++.+.|.++....+.. ...+++|++.++++.+.+.+.+... . .|+.+|
T Consensus 217 -~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~----~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~ 291 (310)
T 1ofh_A 217 -SLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEK----TENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAY 291 (310)
T ss_dssp -CHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHH----SCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHH
T ss_pred -HHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhccc----ccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHH
Confidence 13344443333 2334579999999999885433221 1246799999999887654433221 1 489999
Q ss_pred HHHHHH
Q 006051 601 AITAIL 606 (663)
Q Consensus 601 v~~Ai~ 606 (663)
+..|+.
T Consensus 292 v~~~l~ 297 (310)
T 1ofh_A 292 VADALG 297 (310)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 988775
No 12
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.73 E-value=6e-18 Score=172.16 Aligned_cols=233 Identities=18% Similarity=0.187 Sum_probs=140.8
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEE
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~ 391 (663)
+++|+......++-.+... .+.+.++||+||||||||++|+++++.++ .+++...+......+....
T Consensus 7 ~~ig~~~~~~~~~~~~~~~----------~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 7 NLLGEANSFLEVLEQVSHL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp ---CCCHHHHHHHHHHHHH----------TTSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHH
Confidence 4667776555544322210 01237899999999999999999999876 3455544433211110000
Q ss_pred eecC------chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCC
Q 006051 392 VKDG------GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHY 465 (663)
Q Consensus 392 ~~~~------~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~ 465 (663)
+.+. |......|.+..+++|++||||++.++.+.+..|+++|+++.+ .+.|.....+.++.+|+|||+.-
T Consensus 77 l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~~iI~atn~~~-- 152 (265)
T 2bjv_A 77 LFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGEL--ERVGGSQPLQVNVRLVCATNADL-- 152 (265)
T ss_dssp HHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEE--CCCCC--CEECCCEEEEEESSCH--
T ss_pred hcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCe--ecCCCcccccCCeEEEEecCcCH--
Confidence 0000 1111235667778899999999999999999999999999876 45555555677889999999840
Q ss_pred CCCCccccccCCChhhhhhhhh-hhhhcCCCChhHH-HHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCC
Q 006051 466 DPNLSLSVNTTLSGPLLSRFDI-VLVLLDTKNPEWD-AVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFK 543 (663)
Q Consensus 466 d~~~~~~~~~~l~~aLl~RFdl-i~~l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~ 543 (663)
........+.++|++||+. .+.+++......| ..+..|++ +++.........
T Consensus 153 ---~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l-----------------------~~~~~~~~~~~~ 206 (265)
T 2bjv_A 153 ---PAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFA-----------------------IQMCREIKLPLF 206 (265)
T ss_dssp ---HHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHH-----------------------HHHHHHTTCSSC
T ss_pred ---HHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHH-----------------------HHHHHHhCCCcc
Confidence 0001112466799999974 3334222211111 11222222 222111111111
Q ss_pred CccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhH
Q 006051 544 PILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDA 601 (663)
Q Consensus 544 p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv 601 (663)
+.+++++.+.|..| +|+.++|+|+++++.+...+. ...|+.+|+
T Consensus 207 ~~~~~~a~~~L~~~-----------~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 207 PGFTERARETLLNY-----------RWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp CCBCHHHHHHHHHS-----------CCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred cCcCHHHHHHHHhC-----------CCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 47999999998877 799999999999998776664 456777776
No 13
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.71 E-value=9e-18 Score=179.85 Aligned_cols=268 Identities=16% Similarity=0.159 Sum_probs=150.8
Q ss_pred HHhhccccccCchhHHHHHHHHHHhCCceeecC------------------CCCccccccccccccCCCchHHHHHHHHH
Q 006051 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDA------------------SGTKVRGESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 307 ~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~------------------~~~~~r~~~~iLL~G~pGtGKs~lar~ia 368 (663)
.+.+.+...|+|++.+|+++..++.....+... .+...++..++||+||||||||++|++++
T Consensus 14 ~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la 93 (376)
T 1um8_A 14 ELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLA 93 (376)
T ss_dssp HHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHH
Confidence 455556678999999999999887421111000 00011245789999999999999999999
Q ss_pred HhcCCceEEeCCCccc-CCceEEEeecC--chhHhhhhhhhhccCCeeecccccccChh--------------hHHhHHH
Q 006051 369 KLSNRSVITTGLGSTS-AGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREH--------------DRATIHE 431 (663)
Q Consensus 369 ~~~~~~~~~~~~~~~~-~gl~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~~--------------~~~~L~~ 431 (663)
+.++.+++........ .++......+. +......|.+..+.+||+||||++++... .++.|+.
T Consensus 94 ~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~ 173 (376)
T 1um8_A 94 KHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLK 173 (376)
T ss_dssp HHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHH
T ss_pred HHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHH
Confidence 9998888775443321 22211111110 11111234455678999999999999887 8999999
Q ss_pred HHHhceeeeeccCceeecC--------CcEEEEEeeCCC-------CCCC--------CCC-------ccc-------cc
Q 006051 432 AMEQQTISVAKAGLVTTLS--------TRTIIFGATNPK-------GHYD--------PNL-------SLS-------VN 474 (663)
Q Consensus 432 ~me~~~i~i~k~g~~~~~~--------~~~~iiaatN~~-------g~~d--------~~~-------~~~-------~~ 474 (663)
+||.+.+.+...|.....+ .++.+|+|+|.. .+|+ +.. ... ..
T Consensus 174 ~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~ 253 (376)
T 1um8_A 174 IVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVT 253 (376)
T ss_dssp HHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHH
T ss_pred HhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhh
Confidence 9998877666655544333 344566666631 1111 000 000 02
Q ss_pred cCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH-ccCCCccCHHHHHH
Q 006051 475 TTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVK-GYFKPILTKEAEKV 553 (663)
Q Consensus 475 ~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r-~~~~p~ls~ea~~~ 553 (663)
..+.++|++||+.++.+.+...++....+.. .. ...+++|....+ ......+++++.+.
T Consensus 254 ~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~-----~~---------------~~~~~~~~~~~~~~~~~~~~~~~a~~~ 313 (376)
T 1um8_A 254 YGLIPELIGRLPVLSTLDSISLEAMVDILQK-----PK---------------NALIKQYQQLFKMDEVDLIFEEEAIKE 313 (376)
T ss_dssp TTCCHHHHTTCCEEEECCCCCHHHHHHHHHS-----ST---------------TCHHHHHHHHHHTTTCEEEECHHHHHH
T ss_pred cCCChHHhcCCCceeeccCCCHHHHHHHHhh-----hH---------------HHHHHHHHHHHhhcCceEEECHHHHHH
Confidence 3577999999998887766554444333321 00 012333332221 22345699999999
Q ss_pred HHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCC------CccChhhHHH
Q 006051 554 ISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFR------NEVTRLDAIT 603 (663)
Q Consensus 554 l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~------~~V~~~Dv~~ 603 (663)
|..+.. +...++|.|++++..+...+-.+.. -.|+.+|+..
T Consensus 314 l~~~~~---------~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~ 360 (376)
T 1um8_A 314 IAQLAL---------ERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLK 360 (376)
T ss_dssp HHHHHH---------HTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTT
T ss_pred HHHHhc---------ccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcC
Confidence 887721 1236789999988876554433222 1577777764
No 14
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=9.1e-17 Score=169.79 Aligned_cols=224 Identities=19% Similarity=0.073 Sum_probs=135.3
Q ss_pred ccCchhHHHHHHHHHHhCCcee-ecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
+|.|++.+|+.|.-.+...... ....+..++++.++||+||||||||++|+++|+.++.+++..........
T Consensus 149 dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk------- 221 (405)
T 4b4t_J 149 MVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQK------- 221 (405)
T ss_dssp GSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCS-------
T ss_pred HhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcc-------
Confidence 6788887776665444321111 00011224556789999999999999999999999999887543322111
Q ss_pred cCchhHhh-hhhhh---hccCCeeecccccccChh-----------h---HHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 394 DGGEWMLE-AGALV---LADGGLCCIDEFDSMREH-----------D---RATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 394 ~~~~~~~~-~g~l~---~a~~gvl~iDEid~l~~~-----------~---~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
..|+.... ...+. ...++|+||||+|.+... . ...|+..|+.-. -..++.|
T Consensus 222 ~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~V~v 290 (405)
T 4b4t_J 222 YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE-----------TSKNIKI 290 (405)
T ss_dssp STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT-----------CCCCEEE
T ss_pred ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC-----------CCCCeEE
Confidence 01211111 11111 235789999999997421 1 223444444211 1346789
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRR 533 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (663)
|||||.+..+ ++||++ |||..+.+ +.|+.+.+..|.+..++.... ...++ +.
T Consensus 291 IaATNrpd~L------------DpAllRpGRfD~~I~i-~lPd~~~R~~Il~~~~~~~~l---------~~dvd---l~- 344 (405)
T 4b4t_J 291 IMATNRLDIL------------DPALLRPGRIDRKIEF-PPPSVAARAEILRIHSRKMNL---------TRGIN---LR- 344 (405)
T ss_dssp EEEESCSSSS------------CHHHHSTTSSCCEEEC-CCCCHHHHHHHHHHHHTTSBC---------CSSCC---HH-
T ss_pred EeccCChhhC------------CHhHcCCCcCceEEEc-CCcCHHHHHHHHHHHhcCCCC---------CccCC---HH-
Confidence 9999998544 459998 99999998 556655544443333321110 00011 11
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
.|... ....|-+.|.++++-|...|--+.+..|+.+|+..|+.-+....
T Consensus 345 -------------------~lA~~-----------t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~~ 393 (405)
T 4b4t_J 345 -------------------KVAEK-----------MNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKN 393 (405)
T ss_dssp -------------------HHHHH-----------CCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHH-----------CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCcc
Confidence 11111 12356788999999888888777888999999999997665443
No 15
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.69 E-value=1.9e-17 Score=177.67 Aligned_cols=205 Identities=21% Similarity=0.295 Sum_probs=139.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeeccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDE 417 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDE 417 (663)
+.++|+.|++||||+.+|++++..++ .+++...++.....+..+.+++. |.....+|.+..|++|++||||
T Consensus 160 ~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a~~gtlflde 239 (387)
T 1ny5_A 160 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELADGGTLFLDE 239 (387)
T ss_dssp CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEES
T ss_pred CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeCCCcEEEEcC
Confidence 47899999999999999999999876 46777666543322222222221 2222357888999999999999
Q ss_pred ccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCccccccCCChhhhhhhhhhhh
Q 006051 418 FDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNTTLSGPLLSRFDIVLV 490 (663)
Q Consensus 418 id~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~~l~~aLl~RFdli~~ 490 (663)
|+.|+.+.|..|+++|+++.+ .+.|.....+.++++|+|||.. |.|.+ .|+.|+..+.+
T Consensus 240 i~~l~~~~q~~Ll~~l~~~~~--~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~------------dl~~rl~~~~i 305 (387)
T 1ny5_A 240 IGELSLEAQAKLLRVIESGKF--YRLGGRKEIEVNVRILAATNRNIKELVKEGKFRE------------DLYYRLGVIEI 305 (387)
T ss_dssp GGGCCHHHHHHHHHHHHHSEE--CCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCH------------HHHHHHTTEEE
T ss_pred hhhCCHHHHHHHHHHHhcCcE--EeCCCCceeeccEEEEEeCCCCHHHHHHcCCccH------------HHHHhhcCCee
Confidence 999999999999999999986 4566666778899999999983 55554 45555443221
Q ss_pred -hcCCCChhHH-HHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCC
Q 006051 491 -LLDTKNPEWD-AVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQN 568 (663)
Q Consensus 491 -l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~ 568 (663)
++.......| ..++.|+++ ++..... .-.+.++++|.+.|..|
T Consensus 306 ~lPpLreR~~Di~~l~~~~l~-----------------------~~~~~~~-~~~~~~~~~a~~~l~~~----------- 350 (387)
T 1ny5_A 306 EIPPLRERKEDIIPLANHFLK-----------------------KFSRKYA-KEVEGFTKSAQELLLSY----------- 350 (387)
T ss_dssp ECCCGGGCHHHHHHHHHHHHH-----------------------HHHHHTT-CCCCEECHHHHHHHHHS-----------
T ss_pred cCCcchhccccHHHHHHHHHH-----------------------HHHHHcC-CCCCCCCHHHHHHHHhC-----------
Confidence 1111110000 112333332 2211111 11346999999999998
Q ss_pred CccccHhHHHHHHHHHHHHHhccCCCccChhhHHH
Q 006051 569 AARTTVRMLESLIRLAQAHARLMFRNEVTRLDAIT 603 (663)
Q Consensus 569 ~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~ 603 (663)
+||+|+|+|+++++.+...+. ...++.+|+..
T Consensus 351 ~wpGNvreL~~~i~~~~~~~~---~~~i~~~~l~~ 382 (387)
T 1ny5_A 351 PWYGNVRELKNVIERAVLFSE---GKFIDRGELSC 382 (387)
T ss_dssp CCTTHHHHHHHHHHHHHHHCC---SSEECHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHhCC---CCcCcHHHCcH
Confidence 899999999999998777664 45788888754
No 16
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.68 E-value=1.9e-16 Score=167.65 Aligned_cols=226 Identities=15% Similarity=0.117 Sum_probs=136.0
Q ss_pred cccCchhHHHHHHHHHHhCCcee-ecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.+|.|++.+|+.|.-.+...... ....+..++.+.+|||+||||||||++|+++|..+..+++.......... ++
T Consensus 182 ~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk----~v 257 (437)
T 4b4t_I 182 SDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQK----YL 257 (437)
T ss_dssp GGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCS----SS
T ss_pred eecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhc----cC
Confidence 37788887777665444321111 00011224556789999999999999999999999999887643321111 00
Q ss_pred ecCchhHhhhhhhh---hccCCeeecccccccChh-----------hHH---hHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 393 KDGGEWMLEAGALV---LADGGLCCIDEFDSMREH-----------DRA---TIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 393 ~~~~~~~~~~g~l~---~a~~gvl~iDEid~l~~~-----------~~~---~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
+.++..+. ..+. ...++|+||||+|.+... ... .++..|+... -..++.|
T Consensus 258 -Gesek~ir-~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~-----------~~~~ViV 324 (437)
T 4b4t_I 258 -GDGPRLCR-QIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD-----------DRGDVKV 324 (437)
T ss_dssp -SHHHHHHH-HHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC-----------CSSSEEE
T ss_pred -chHHHHHH-HHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC-----------CCCCEEE
Confidence 00111111 1111 235789999999987321 122 3444444211 1346789
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRR 533 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (663)
|||||.+..+|+ ||++ |||..+.+ +.|+.+.+..|.+..++.... ...++ +
T Consensus 325 IaATNrpd~LDp------------ALlRpGRfD~~I~v-~lPd~~~R~~Il~~~l~~~~l---------~~dvd---l-- 377 (437)
T 4b4t_I 325 IMATNKIETLDP------------ALIRPGRIDRKILF-ENPDLSTKKKILGIHTSKMNL---------SEDVN---L-- 377 (437)
T ss_dssp EEEESCSTTCCT------------TSSCTTTEEEEECC-CCCCHHHHHHHHHHHHTTSCB---------CSCCC---H--
T ss_pred EEeCCChhhcCH------------HHhcCCceeEEEEc-CCcCHHHHHHHHHHHhcCCCC---------CCcCC---H--
Confidence 999999865554 8988 99999988 556655544443333321110 00011 1
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
+.|... ....|-+.|+++++-|...|-.+.+..|+.+|+..|+.-+..+.
T Consensus 378 ------------------~~LA~~-----------T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~~ 427 (437)
T 4b4t_I 378 ------------------ETLVTT-----------KDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNK 427 (437)
T ss_dssp ------------------HHHHHH-----------CCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHHH
T ss_pred ------------------HHHHHh-----------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCCC
Confidence 111111 12356788999999888888778889999999999998765544
No 17
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.67 E-value=9.7e-17 Score=166.96 Aligned_cols=241 Identities=15% Similarity=0.105 Sum_probs=148.4
Q ss_pred HHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcc
Q 006051 307 AILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGST 383 (663)
Q Consensus 307 ~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~ 383 (663)
.+.+.+...++|++.+++.+..++..+.... ....++..++||+||||||||++|+++++.+. .+++..++...
T Consensus 10 ~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~---~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~ 86 (311)
T 4fcw_A 10 RLEEELHKRVVGQDEAIRAVADAIRRARAGL---KDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY 86 (311)
T ss_dssp THHHHHHTTCCSCHHHHHHHHHHHHHHHHTC---SCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred HHHHHHhhhcCCHHHHHHHHHHHHHHHhcCC---CCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence 3455566788999999888887776531110 11123346899999999999999999999763 33554443322
Q ss_pred cCCceEEEeecC-----c--hhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 384 SAGLTVTAVKDG-----G--EWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 384 ~~gl~~~~~~~~-----~--~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
........+.+. + ....-.+++..+.+||+||||+++++++.++.|+++|+++.+... .+....+ .++.+|
T Consensus 87 ~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~-~~~~~~~-~~~iiI 164 (311)
T 4fcw_A 87 MEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDS-HGRTVDF-RNTVII 164 (311)
T ss_dssp CSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECT-TSCEEEC-TTEEEE
T ss_pred cccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcC-CCCEEEC-CCcEEE
Confidence 211111111100 0 000112344456789999999999999999999999999987532 2222222 356799
Q ss_pred EeeCCC--------CCCCCCCcccc------ccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCC
Q 006051 457 GATNPK--------GHYDPNLSLSV------NTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPL 522 (663)
Q Consensus 457 aatN~~--------g~~d~~~~~~~------~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~ 522 (663)
+|||+. +..+....+.. ...+.++|++||+.++.+..+. .+....+..+++....
T Consensus 165 ~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~-~~~~~~i~~~~l~~~~---------- 233 (311)
T 4fcw_A 165 MTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLT-KEQIRQIVEIQMSYLR---------- 233 (311)
T ss_dssp EEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCC-HHHHHHHHHHHTHHHH----------
T ss_pred EecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCC-HHHHHHHHHHHHHHHH----------
Confidence 999982 11111111111 2357889999999888875544 3333334444332211
Q ss_pred CCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCc--cccHhHHHHHHHHHHH
Q 006051 523 TDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAA--RTTVRMLESLIRLAQA 586 (663)
Q Consensus 523 ~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~--~~t~R~Le~lirla~a 586 (663)
+ .+......+.+++++.+.|.++ +| ++++|+|+++++.+-.
T Consensus 234 ---------~---~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 234 ---------A---RLAEKRISLELTEAAKDFLAER-----------GYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp ---------H---HHHTTTCEEEECHHHHHHHHHH-----------SCBTTTBTTTHHHHHHHHTH
T ss_pred ---------H---HHHhCCcEEEeCHHHHHHHHHh-----------CCCccCCchhHHHHHHHHHH
Confidence 0 1111124567999999999987 56 8999999999986544
No 18
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.67 E-value=4.2e-17 Score=173.57 Aligned_cols=193 Identities=21% Similarity=0.297 Sum_probs=133.1
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCc--eEEeCCCcccCCceEEEeecC------chhHhhhhhhhhccCCeeecccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRS--VITTGLGSTSAGLTVTAVKDG------GEWMLEAGALVLADGGLCCIDEF 418 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~--~~~~~~~~~~~gl~~~~~~~~------~~~~~~~g~l~~a~~gvl~iDEi 418 (663)
+.++|+.|++||||+.+|++++..+++. ++...++.....+..+.+++. |......|.+..|++|++|||||
T Consensus 152 ~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei 231 (368)
T 3dzd_A 152 KAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELADQGTLFLDEV 231 (368)
T ss_dssp CSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHTTTSEEEEETG
T ss_pred chhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhcCCCeEEecCh
Confidence 3789999999999999999999988764 666666654444332222221 22223578889999999999999
Q ss_pred cccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-------CCCCCCCccccccCCChhhhhhhhhh-hh
Q 006051 419 DSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-------GHYDPNLSLSVNTTLSGPLLSRFDIV-LV 490 (663)
Q Consensus 419 d~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-------g~~d~~~~~~~~~~l~~aLl~RFdli-~~ 490 (663)
+.|+.+.|..|+++|+++.+ .+.|.....+.++++|+|||.. |.|.+ .|+.|+..+ +.
T Consensus 232 ~~l~~~~Q~~Ll~~l~~~~~--~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~------------dL~~rl~~~~i~ 297 (368)
T 3dzd_A 232 GELDQRVQAKLLRVLETGSF--TRLGGNQKIEVDIRVISATNKNLEEEIKKGNFRE------------DLYYRLSVFQIY 297 (368)
T ss_dssp GGSCHHHHHHHHHHHHHSEE--CCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCH------------HHHHHHTSEEEE
T ss_pred hhCCHHHHHHHHHHHHhCCc--ccCCCCcceeeeeEEEEecCCCHHHHHHcCCccH------------HHHHHhCCeEEe
Confidence 99999999999999999987 4556666678899999999974 45544 566665543 22
Q ss_pred hcCCCChhHH-HHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCC
Q 006051 491 LLDTKNPEWD-AVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNA 569 (663)
Q Consensus 491 l~d~~~~~~d-~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~ 569 (663)
++.......| ..++.|+++ ++..... .-.+.+|++|.+.|..| +
T Consensus 298 lPpLreR~~Di~~l~~~~l~-----------------------~~~~~~~-~~~~~~~~~a~~~L~~~-----------~ 342 (368)
T 3dzd_A 298 LPPLRERGKDVILLAEYFLK-----------------------KFAKEYK-KNCFELSEETKEYLMKQ-----------E 342 (368)
T ss_dssp CCCGGGSTTHHHHHHHHHHH-----------------------HHHHHTT-CCCCCBCHHHHHHHHTC-----------C
T ss_pred CCChhhchhhHHHHHHHHHH-----------------------HHHHHcC-CCCCCcCHHHHHHHHhC-----------C
Confidence 2111111011 122333332 2211111 12356999999999998 8
Q ss_pred ccccHhHHHHHHHHHHHHH
Q 006051 570 ARTTVRMLESLIRLAQAHA 588 (663)
Q Consensus 570 ~~~t~R~Le~lirla~a~A 588 (663)
||+|+|+|+++++.+...+
T Consensus 343 wpGNvreL~n~i~~~~~~~ 361 (368)
T 3dzd_A 343 WKGNVRELKNLIERAVILC 361 (368)
T ss_dssp CTTHHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHHHhC
Confidence 9999999999999776544
No 19
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.66 E-value=1.4e-17 Score=177.51 Aligned_cols=255 Identities=17% Similarity=0.201 Sum_probs=143.7
Q ss_pred HhhccccccCchhHHHHHHHHHHhCCceeecCC---CCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCccc
Q 006051 308 ILRGICPQVFGLFTVKLAVALTLIGGVQHVDAS---GTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTS 384 (663)
Q Consensus 308 l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~---~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~ 384 (663)
+.+.+...|+|++.+|+++..++.......... .....++.++||+||||||||++|+++|+.++.+++....+...
T Consensus 9 l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~ 88 (363)
T 3hws_A 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLT 88 (363)
T ss_dssp HHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHT
T ss_pred HHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhc
Confidence 344445568999999999888774211111000 01112457999999999999999999999998888876543211
Q ss_pred -CCceEEEeecC--chhHhhhhhhhhccCCeeecccccccChh--------------hHHhHHHHHHhceeeeeccCcee
Q 006051 385 -AGLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVT 447 (663)
Q Consensus 385 -~gl~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~~--------------~~~~L~~~me~~~i~i~k~g~~~ 447 (663)
.++......+. +.+....+.+..+.+||+||||+++++.. .++.|+++|+...+.+...+...
T Consensus 89 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~ 168 (363)
T 3hws_A 89 EAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRK 168 (363)
T ss_dssp TCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC-----------
T ss_pred ccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccc
Confidence 11110000000 00111123345567899999999999876 89999999994333332222221
Q ss_pred e--------cCCcEEEEEeeCCCC----------C-----CCCCC----------cccc--------ccCCChhhhhhhh
Q 006051 448 T--------LSTRTIIFGATNPKG----------H-----YDPNL----------SLSV--------NTTLSGPLLSRFD 486 (663)
Q Consensus 448 ~--------~~~~~~iiaatN~~g----------~-----~d~~~----------~~~~--------~~~l~~aLl~RFd 486 (663)
. ..++..+|+++|..| + |.... .+.. ...+.++|++|||
T Consensus 169 ~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~ 248 (363)
T 3hws_A 169 HPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLP 248 (363)
T ss_dssp -----CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCC
T ss_pred cCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccC
Confidence 1 123445555655421 0 00000 0000 0117899999999
Q ss_pred hhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH-ccCCCccCHHHHHHHHHH-HHHHHhc
Q 006051 487 IVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVK-GYFKPILTKEAEKVISSY-YQLQRRS 564 (663)
Q Consensus 487 li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r-~~~~p~ls~ea~~~l~~~-y~~~r~~ 564 (663)
.++.+.++..++...++. ... ...+++|..... ......+++++.+.|.++ |
T Consensus 249 ~~~~~~pl~~~~~~~I~~-----~~~---------------~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~------ 302 (363)
T 3hws_A 249 VVATLNELSEEALIQILK-----EPK---------------NALTKQYQALFNLEGVDLEFRDEALDAIAKKAM------ 302 (363)
T ss_dssp EEEECCCCCHHHHHHHHH-----SST---------------TCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH------
T ss_pred eeeecCCCCHHHHHHHHH-----HHH---------------HHHHHHHHHHHHhcCceEEECHHHHHHHHHhhc------
Confidence 988775554444333322 111 013344443332 234557899999998864 3
Q ss_pred ccCCCccccHhHHHHHHHHHHHHHhccC
Q 006051 565 ATQNAARTTVRMLESLIRLAQAHARLMF 592 (663)
Q Consensus 565 ~~~~~~~~t~R~Le~lirla~a~A~l~~ 592 (663)
+|++++|.|++++.-+-..+-.++
T Consensus 303 ----~~~~gaR~L~~~ie~~~~~~l~~~ 326 (363)
T 3hws_A 303 ----ARKTGARGLRSIVEAALLDTMYDL 326 (363)
T ss_dssp ----HTTCTTTTHHHHHHHHHHHHHHST
T ss_pred ----CCccCchHHHHHHHHHHHHHHHhc
Confidence 578889999999987665554433
No 20
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.66 E-value=2.9e-15 Score=156.65 Aligned_cols=221 Identities=24% Similarity=0.287 Sum_probs=148.5
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
+.+++|++.++..+...+...... -+...++||+||||||||++|+++++.++.+++........
T Consensus 11 ~~~~ig~~~~~~~l~~~l~~~~~~-------~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~-------- 75 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKAR-------KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIE-------- 75 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHH-------CSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCC--------
T ss_pred HHHhhCHHHHHHHHHHHHHHHHcc-------CCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccC--------
Confidence 346889998877776555321000 01236899999999999999999999887776654332210
Q ss_pred ecCchhHhhhhhhh--hccCCeeecccccccChhhHHhHHHHHHhceeeeeccC-----ceeecCCcEEEEEeeCCCCCC
Q 006051 393 KDGGEWMLEAGALV--LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAG-----LVTTLSTRTIIFGATNPKGHY 465 (663)
Q Consensus 393 ~~~~~~~~~~g~l~--~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g-----~~~~~~~~~~iiaatN~~g~~ 465 (663)
..++. .+.+. .+++|++||||++.++...+..|+.+|+++.+.+.-.. .......++.+|+|||..+.+
T Consensus 76 -~~~~l---~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~ 151 (324)
T 1hqc_A 76 -KPGDL---AAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI 151 (324)
T ss_dssp -SHHHH---HHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC
T ss_pred -ChHHH---HHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccC
Confidence 00111 22332 36889999999999999999999999999876543111 111123468899999987554
Q ss_pred CCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCc
Q 006051 466 DPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPI 545 (663)
Q Consensus 466 d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ 545 (663)
+ ++|++||+.++.+..++.++. ..++...-......
T Consensus 152 ~------------~~l~~R~~~~i~l~~~~~~e~--------------------------------~~~l~~~~~~~~~~ 187 (324)
T 1hqc_A 152 T------------APLLSRFGIVEHLEYYTPEEL--------------------------------AQGVMRDARLLGVR 187 (324)
T ss_dssp S------------CSTTTTCSCEEECCCCCHHHH--------------------------------HHHHHHHHHTTTCC
T ss_pred C------------HHHHhcccEEEecCCCCHHHH--------------------------------HHHHHHHHHhcCCC
Confidence 4 478999987777644433222 22221111122345
Q ss_pred cCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 546 LTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 546 ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
+++++.+.|..+ +++++|.+.++++.+...|.+.....|+.+|+..++..+
T Consensus 188 ~~~~~~~~l~~~------------~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~ 238 (324)
T 1hqc_A 188 ITEEAALEIGRR------------SRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAAL 238 (324)
T ss_dssp CCHHHHHHHHHH------------SCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHH------------ccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 788888887776 356789999999988888877778889999998877654
No 21
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.2e-15 Score=163.17 Aligned_cols=226 Identities=18% Similarity=0.087 Sum_probs=134.6
Q ss_pred cccCchhHHHHHHHHHHhCCcee-ecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.+|.|++.+|+.|.-.+...... ....+..++.+.+|||+||||||||++|+++|+.+..+++.......... .+
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk----~v 284 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQK----YV 284 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCC----SS
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcc----cC
Confidence 36788887777665433211100 00011224566889999999999999999999999998887543321111 00
Q ss_pred ecCchhHhhhhhhh---hccCCeeecccccccChh-----------hH---HhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 393 KDGGEWMLEAGALV---LADGGLCCIDEFDSMREH-----------DR---ATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 393 ~~~~~~~~~~g~l~---~a~~gvl~iDEid~l~~~-----------~~---~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
+.++..+ ...+. ...++|+||||+|.+... .+ ..++..|+... -..++.|
T Consensus 285 -Gesek~i-r~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~ViV 351 (467)
T 4b4t_H 285 -GEGARMV-RELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD-----------PRGNIKV 351 (467)
T ss_dssp -SHHHHHH-HHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----------CTTTEEE
T ss_pred -CHHHHHH-HHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----------CCCcEEE
Confidence 0111111 11111 235789999999987421 11 22333443211 1346789
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRR 533 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (663)
|||||.+..+| +||++ |||..+.+ +.|+.+.+..|.+..++.... ...++.+
T Consensus 352 IaATNrpd~LD------------pALlRpGRFD~~I~i-~lPd~~~R~~Ilk~~l~~~~l---------~~dvdl~---- 405 (467)
T 4b4t_H 352 MFATNRPNTLD------------PALLRPGRIDRKVEF-SLPDLEGRANIFRIHSKSMSV---------ERGIRWE---- 405 (467)
T ss_dssp EEECSCTTSBC------------HHHHSTTTCCEEECC-CCCCHHHHHHHHHHHHTTSCB---------CSSCCHH----
T ss_pred EeCCCCcccCC------------hhhhccccccEEEEe-CCcCHHHHHHHHHHHhcCCCC---------CCCCCHH----
Confidence 99999985444 59998 99999988 556655544444333321110 0011111
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
.|... ....|-+.|.++++-|...|-.+.+..|+.+|+..|+.-+..+.
T Consensus 406 -------------------~LA~~-----------T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~ 454 (467)
T 4b4t_H 406 -------------------LISRL-----------CPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGY 454 (467)
T ss_dssp -------------------HHHHH-----------CCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHH-----------CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCc
Confidence 11111 12356788999999888888778899999999999997665443
No 22
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.65 E-value=5e-16 Score=161.45 Aligned_cols=235 Identities=18% Similarity=0.156 Sum_probs=144.6
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCc--eeecCCCC-ccccccccccccCCCchHHHHHHHHHHhcCC-------ce
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGV--QHVDASGT-KVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-------SV 375 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~--~~~~~~~~-~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~-------~~ 375 (663)
..+.+.+..+|+|++.+|+.+.-.+.... ......|. ..++..|+||+||||||||++|+++++.+.. ++
T Consensus 23 ~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~ 102 (309)
T 3syl_A 23 KEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHL 102 (309)
T ss_dssp HHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCE
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcE
Confidence 35566677789999999988874432100 00000000 1234468999999999999999999986532 34
Q ss_pred EEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeeccccccc---------ChhhHHhHHHHHHhceeeeeccCce
Q 006051 376 ITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSM---------REHDRATIHEAMEQQTISVAKAGLV 446 (663)
Q Consensus 376 ~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l---------~~~~~~~L~~~me~~~i~i~k~g~~ 446 (663)
+.......... ..+. ......+.+..+.++|+||||++.+ +...++.|+..|+++.
T Consensus 103 ~~~~~~~l~~~-----~~g~-~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~--------- 167 (309)
T 3syl_A 103 VSVTRDDLVGQ-----YIGH-TAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNR--------- 167 (309)
T ss_dssp EEECGGGTCCS-----STTC-HHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCT---------
T ss_pred EEEcHHHhhhh-----cccc-cHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCC---------
Confidence 44332111110 0111 1111245556678999999999977 7778889999999752
Q ss_pred eecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCC
Q 006051 447 TTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIW 526 (663)
Q Consensus 447 ~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 526 (663)
.++.+|+++|+.. ......+.++|++||+.++.+..+..++....+ .+++.
T Consensus 168 ----~~~~~i~~~~~~~-------~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il-~~~l~----------------- 218 (309)
T 3syl_A 168 ----DDLVVILAGYADR-------MENFFQSNPGFRSRIAHHIEFPDYSDEELFEIA-GHMLD----------------- 218 (309)
T ss_dssp ----TTCEEEEEECHHH-------HHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHH-HHHHH-----------------
T ss_pred ----CCEEEEEeCChHH-------HHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHH-HHHHH-----------------
Confidence 4568899998741 000112347899999988888554433332222 22221
Q ss_pred CHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhcc----CCCccChhhHH
Q 006051 527 PLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLM----FRNEVTRLDAI 602 (663)
Q Consensus 527 ~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~----~~~~V~~~Dv~ 602 (663)
.....+++++.+.+..+....+.. .|+.++|.+.++++.+...+..+ ....++.+|+.
T Consensus 219 --------------~~~~~~~~~~~~~l~~~~~~~~~~----~~~gn~r~l~~~l~~a~~~~~~r~~~~~~~~~~~~~l~ 280 (309)
T 3syl_A 219 --------------DQNYQMTPEAETALRAYIGLRRNQ----PHFANARSIRNALDRARLRQANRLFTASSGPLDARALS 280 (309)
T ss_dssp --------------HTTCEECHHHHHHHHHHHHHHTTS----SSCCHHHHHHHHHHHHHHHHHHHHHHC---CEEHHHHH
T ss_pred --------------HcCCCCCHHHHHHHHHHHHHhccC----CCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCCHHHHh
Confidence 123468889988888887655432 68899999999999887654433 23455555543
No 23
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.65 E-value=9.7e-16 Score=164.32 Aligned_cols=220 Identities=19% Similarity=0.124 Sum_probs=135.6
Q ss_pred ccCchhHHHHHHHHHHhCCceee-cCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
+|.|++.+|+.|.-.+....... ......++.+.++||+||||||||++|+++|+.++.+++....+......
T Consensus 173 digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~------ 246 (428)
T 4b4t_K 173 DVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKY------ 246 (428)
T ss_dssp GSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSS------
T ss_pred HhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccc------
Confidence 77888877776654443211110 00111234557899999999999999999999999998876443221110
Q ss_pred cCchhHhh-hhhhh---hccCCeeecccccccChh--------------hHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 394 DGGEWMLE-AGALV---LADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 394 ~~~~~~~~-~g~l~---~a~~gvl~iDEid~l~~~--------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
.|+.... ...+. ...++|+||||+|.+... ..+.|+..|+.-. -..++.|
T Consensus 247 -~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~-----------~~~~v~v 314 (428)
T 4b4t_K 247 -LGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD-----------QSTNVKV 314 (428)
T ss_dssp -CSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC-----------SSCSEEE
T ss_pred -cchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC-----------CCCCEEE
Confidence 1211111 11111 235789999999986321 1234555555311 1245789
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRR 533 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (663)
|||||.+.. |++||++ |||..+.+++.|+.+.+..|.+.+++....
T Consensus 315 I~aTN~~~~------------LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-------------------- 362 (428)
T 4b4t_K 315 IMATNRADT------------LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-------------------- 362 (428)
T ss_dssp EEEESCSSS------------CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--------------------
T ss_pred EEecCChhh------------cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--------------------
Confidence 999998854 4569998 999999887777776665555444432210
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHH
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l 607 (663)
.+.++ .+.|... ....|-+.|.++++-|.-.|-.+.+..|+.+|+..|+.-
T Consensus 363 ---------~~~~d---l~~lA~~-----------t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 363 ---------APEAD---LDSLIIR-----------NDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp ---------CTTCC---HHHHHHH-----------TTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ---------CcccC---HHHHHHH-----------CCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 01111 1111111 123567889999998888887788899999999999854
No 24
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=2.3e-16 Score=169.35 Aligned_cols=225 Identities=16% Similarity=0.124 Sum_probs=136.2
Q ss_pred cccCchhHHHHHHHHHHhCCcee-ecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.+|.|++.+|+.|.-.+...... ....+..++.+.+|||+||||||||++|+++|..++.+++....+..... +
T Consensus 181 ~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~----~- 255 (434)
T 4b4t_M 181 SDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQM----Y- 255 (434)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSS----C-
T ss_pred HhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhc----c-
Confidence 37888888877765443321111 00011224556789999999999999999999999999887643322111 0
Q ss_pred ecCchhHhh-hhhhh---hccCCeeecccccccChh-----------hH---HhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 393 KDGGEWMLE-AGALV---LADGGLCCIDEFDSMREH-----------DR---ATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 393 ~~~~~~~~~-~g~l~---~a~~gvl~iDEid~l~~~-----------~~---~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
.|+.... ...+. ...++|+||||+|.+... .. ..|+..|+.-. -..++.
T Consensus 256 --vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~-----------~~~~Vi 322 (434)
T 4b4t_M 256 --IGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS-----------SDDRVK 322 (434)
T ss_dssp --SSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC-----------SSCSSE
T ss_pred --cchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC-----------CCCCEE
Confidence 1111101 11111 235789999999987211 11 22444443211 124568
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHH
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLR 532 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~ 532 (663)
||||||.+..+|+ ||++ |||..+.+ +.|+.+.+..|.+..++....
T Consensus 323 VIaaTNrp~~LD~------------AllRpGRfD~~I~i-~lPd~~~R~~Il~~~~~~~~~------------------- 370 (434)
T 4b4t_M 323 VLAATNRVDVLDP------------ALLRSGRLDRKIEF-PLPSEDSRAQILQIHSRKMTT------------------- 370 (434)
T ss_dssp EEEECSSCCCCCT------------TTCSTTSEEEEEEC-CCCCHHHHHHHHHHHHHHSCB-------------------
T ss_pred EEEeCCCchhcCH------------hHhcCCceeEEEEe-CCcCHHHHHHHHHHHhcCCCC-------------------
Confidence 9999999865554 8988 99999988 556665555444433332210
Q ss_pred HHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 533 RYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 533 ~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
.+.++ .+.|... ....|-+.|.++++-|...|-.+.+..|+.+|+..|+.-+..+.
T Consensus 371 ----------~~dvd---l~~lA~~-----------t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~~~~ 426 (434)
T 4b4t_M 371 ----------DDDIN---WQELARS-----------TDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQARK 426 (434)
T ss_dssp ----------CSCCC---HHHHHHH-----------CSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCSSSC
T ss_pred ----------CCcCC---HHHHHHh-----------CCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCCC
Confidence 01111 0111111 12356788999999888888778889999999999998765543
No 25
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.64 E-value=6.2e-16 Score=166.09 Aligned_cols=224 Identities=17% Similarity=0.076 Sum_probs=134.6
Q ss_pred ccCchhHHHHHHHHHHhCCcee-ecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQH-VDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~-~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
+|.|++.+|+.|.-.+...... ....+..++++.+|||+||||||||++|+++|+.++.+++....+.....
T Consensus 182 digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk------- 254 (437)
T 4b4t_L 182 GIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDK------- 254 (437)
T ss_dssp GGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCS-------
T ss_pred HhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccc-------
Confidence 6778777666654433321111 00011124566789999999999999999999999998887543322111
Q ss_pred cCchhHhh-hhhhh---hccCCeeecccccccChh-----------h---HHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 394 DGGEWMLE-AGALV---LADGGLCCIDEFDSMREH-----------D---RATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 394 ~~~~~~~~-~g~l~---~a~~gvl~iDEid~l~~~-----------~---~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
..|+.... ...+. ...++|+||||+|.+... . ...|+..|+... -..++.|
T Consensus 255 ~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~-----------~~~~viv 323 (437)
T 4b4t_L 255 YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD-----------NLGQTKI 323 (437)
T ss_dssp SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS-----------CTTSSEE
T ss_pred cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc-----------CCCCeEE
Confidence 01111100 11111 236789999999987321 1 223555554211 1245689
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHH
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRR 533 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (663)
|||||.+..+|+ ||++ |||..+.+ +.|+.+.+..|.+..++.... ...++ +.
T Consensus 324 I~ATNrp~~LDp------------AllRpGRfD~~I~i-~lPd~~~R~~Il~~~~~~~~~---------~~d~d---l~- 377 (437)
T 4b4t_L 324 IMATNRPDTLDP------------ALLRPGRLDRKVEI-PLPNEAGRLEIFKIHTAKVKK---------TGEFD---FE- 377 (437)
T ss_dssp EEEESSTTSSCT------------TTTSTTSEEEEECC-CCCCHHHHHHHHHHHHHTSCB---------CSCCC---HH-
T ss_pred EEecCCchhhCH------------HHhCCCccceeeec-CCcCHHHHHHHHHHHhcCCCC---------CcccC---HH-
Confidence 999999865554 8887 59999988 556655555444433322110 00011 11
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
.|.. . ....|-+.|.++++-|...|-.+.+..|+.+|+..|+.-+..+.
T Consensus 378 -------------------~lA~------~-----t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~~~ 426 (437)
T 4b4t_L 378 -------------------AAVK------M-----SDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAEVK 426 (437)
T ss_dssp -------------------HHHH------T-----CCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHTC
T ss_pred -------------------HHHH------h-----CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcc
Confidence 1110 0 22356788999999888888778889999999999998765544
No 26
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.63 E-value=2.1e-15 Score=176.12 Aligned_cols=240 Identities=13% Similarity=0.111 Sum_probs=149.7
Q ss_pred HHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccC
Q 006051 306 NAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA 385 (663)
Q Consensus 306 ~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~ 385 (663)
..+.+.+...++|++.++..+..++..... ......++..++||+||||||||++|+++++.++.+++...++....
T Consensus 450 ~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~---g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~ 526 (758)
T 1r6b_X 450 KNLGDRLKMLVFGQDKAIEALTEAIKMARA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYME 526 (758)
T ss_dssp HHHHHHHTTTSCSCHHHHHHHHHHHHHHHT---TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSS
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcc
Confidence 345667888999999888766554432100 00111233458999999999999999999999988887766554332
Q ss_pred CceEEEeecC--ch-----hHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 386 GLTVTAVKDG--GE-----WMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 386 gl~~~~~~~~--~~-----~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
..+.+.+.+. |- ...-.+.+..+.+||+||||+++++++.++.|+++|+++.++.. .|....+ .++.||+|
T Consensus 527 ~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~-~g~~~~~-~~~~iI~t 604 (758)
T 1r6b_X 527 RHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDN-NGRKADF-RNVVLVMT 604 (758)
T ss_dssp SSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TTEEEEC-TTEEEEEE
T ss_pred hhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcC-CCCEEec-CCeEEEEe
Confidence 2222222211 10 01113455567889999999999999999999999999988653 3444444 67899999
Q ss_pred eCCCCCC--------CC-C--Cccc--cccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCC
Q 006051 459 TNPKGHY--------DP-N--LSLS--VNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDI 525 (663)
Q Consensus 459 tN~~g~~--------d~-~--~~~~--~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 525 (663)
||+.... .. . .... ....+.++|++|||.++.+.....++. ..+..+.+...
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~-~~i~~~~l~~~-------------- 669 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVI-HQVVDKFIVEL-------------- 669 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHH-HHHHHHHHHHH--------------
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHH-HHHHHHHHHHH--------------
Confidence 9985211 00 0 0000 012578999999998877755444333 33333333211
Q ss_pred CCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCcccc--HhHHHHHHHHH
Q 006051 526 WPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTT--VRMLESLIRLA 584 (663)
Q Consensus 526 ~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t--~R~Le~lirla 584 (663)
.. .+....+...+++++.+.|..+ .|+.+ +|.|..+++.+
T Consensus 670 ------~~--~~~~~~~~~~~~~~a~~~l~~~-----------~~~~~~g~R~l~~~i~~~ 711 (758)
T 1r6b_X 670 ------QV--QLDQKGVSLEVSQEARNWLAEK-----------GYDRAMGARPMARVIQDN 711 (758)
T ss_dssp ------HH--HHHHTTEEEEECHHHHHHHHHH-----------HCBTTTBTTTHHHHHHHH
T ss_pred ------HH--HHHHCCcEEEeCHHHHHHHHHh-----------CCCcCCCchHHHHHHHHH
Confidence 00 1112223457899999998876 34433 88888877644
No 27
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.63 E-value=4.4e-16 Score=163.02 Aligned_cols=166 Identities=20% Similarity=0.184 Sum_probs=102.5
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
..+|.|++.+|+.+...+..............++..++||+||||||||++|+++++.++.+++...........
T Consensus 17 ~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~----- 91 (322)
T 3eie_A 17 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKW----- 91 (322)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTT-----
T ss_pred HHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcc-----
Confidence 347899999999888766432211111111234557899999999999999999999988887765332110000
Q ss_pred ecCchhHhh-hhhh---hhccCCeeecccccccChhh-----------HHhHHHHHHhceeeeeccCceeecCCcEEEEE
Q 006051 393 KDGGEWMLE-AGAL---VLADGGLCCIDEFDSMREHD-----------RATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (663)
Q Consensus 393 ~~~~~~~~~-~g~l---~~a~~gvl~iDEid~l~~~~-----------~~~L~~~me~~~i~i~k~g~~~~~~~~~~iia 457 (663)
.|+.... ...+ ....++|+||||+|.+.... +..++..|+.-. ....++.||+
T Consensus 92 --~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vi~ 159 (322)
T 3eie_A 92 --MGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLG 159 (322)
T ss_dssp --GGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG----------TSCCCEEEEE
T ss_pred --cchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc----------ccCCceEEEE
Confidence 0111100 1111 22356899999999986532 445555554321 1134679999
Q ss_pred eeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 458 ATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 458 atN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
|||... .+.+++++||+..+.+ ..++.+....+.++.+
T Consensus 160 atn~~~------------~ld~al~~Rf~~~i~~-~~p~~~~r~~il~~~~ 197 (322)
T 3eie_A 160 ATNIPW------------QLDSAIRRRFERRIYI-PLPDLAARTTMFEINV 197 (322)
T ss_dssp EESCGG------------GSCHHHHHHCCEEEEC-CCCCHHHHHHHHHHHH
T ss_pred ecCChh------------hCCHHHHcccCeEEEe-CCCCHHHHHHHHHHHh
Confidence 999863 3567999999988877 4455555444444443
No 28
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.61 E-value=4.2e-15 Score=150.31 Aligned_cols=220 Identities=20% Similarity=0.128 Sum_probs=131.2
Q ss_pred ccccCchhHHHHHHHHHHh--CCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 313 CPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
+.+|.|++.+|+.+.-.+. ...... .....+.+.++||+||||||||++++++++..+.+++............
T Consensus 11 ~~~i~G~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~-- 86 (257)
T 1lv7_A 11 FADVAGCDEAKEEVAELVEYLREPSRF--QKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFV-- 86 (257)
T ss_dssp GGGSCSCHHHHHHTHHHHHHHHCGGGC-------CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCC--
T ss_pred HHHhcCcHHHHHHHHHHHHHHhCHHHH--HHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhh--
Confidence 4578999988887754322 111111 1111233467999999999999999999999887777654332211111
Q ss_pred EeecCchhHhhhhhhhhc---cCCeeecccccccChhh--------------HHhHHHHHHhceeeeeccCceeecCCcE
Q 006051 391 AVKDGGEWMLEAGALVLA---DGGLCCIDEFDSMREHD--------------RATIHEAMEQQTISVAKAGLVTTLSTRT 453 (663)
Q Consensus 391 ~~~~~~~~~~~~g~l~~a---~~gvl~iDEid~l~~~~--------------~~~L~~~me~~~i~i~k~g~~~~~~~~~ 453 (663)
+.+.... .+.+..+ .++++||||++.+.... ...++..|+.-. -+.++
T Consensus 87 ---~~~~~~~-~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~-----------~~~~~ 151 (257)
T 1lv7_A 87 ---GVGASRV-RDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE-----------GNEGI 151 (257)
T ss_dssp ---CCCHHHH-HHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC-----------SSSCE
T ss_pred ---hhhHHHH-HHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc-----------cCCCE
Confidence 1111110 1122222 34699999999875432 223333343210 14567
Q ss_pred EEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHH
Q 006051 454 IIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAML 531 (663)
Q Consensus 454 ~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l 531 (663)
.+|+|||.... +.+++++ ||+..+.+ ..|+.+....+.++.++..
T Consensus 152 ~vI~~tn~~~~------------l~~~l~r~~rf~~~i~i-~~P~~~~r~~il~~~~~~~-------------------- 198 (257)
T 1lv7_A 152 IVIAATNRPDV------------LDPALLRPGRFDRQVVV-GLPDVRGREQILKVHMRRV-------------------- 198 (257)
T ss_dssp EEEEEESCTTT------------SCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHHTTS--------------------
T ss_pred EEEEeeCCchh------------CCHHHcCCCcCCeEEEe-CCCCHHHHHHHHHHHHhcC--------------------
Confidence 99999998743 4457777 99987776 3444443333333322111
Q ss_pred HHHHHHHHccCCCccCHHH-HHHHHHHHHHHHhcccCCCccc-cHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHH
Q 006051 532 RRYIYFVKGYFKPILTKEA-EKVISSYYQLQRRSATQNAART-TVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 532 ~~~i~~~r~~~~p~ls~ea-~~~l~~~y~~~r~~~~~~~~~~-t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~ 609 (663)
.+++++ ...+.. .|++ |.|+|+++++-|...|..+.+..|+.+|+..|+..+.
T Consensus 199 -------------~l~~~~~~~~la~------------~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 199 -------------PLAPDIDAAIIAR------------GTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp -------------CBCTTCCHHHHHH------------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred -------------CCCccccHHHHHH------------HcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 111111 111211 3555 8999999999999999988889999999999997654
No 29
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.61 E-value=3e-15 Score=162.94 Aligned_cols=212 Identities=18% Similarity=0.212 Sum_probs=135.6
Q ss_pred ccccCchhHHH---HHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceE
Q 006051 313 CPQVFGLFTVK---LAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTV 389 (663)
Q Consensus 313 ~p~i~G~~~~K---~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~ 389 (663)
..+++|++.++ ..+...+..| ...++||+||||||||++|+.+++.+...++....... +.
T Consensus 25 l~~ivGq~~~~~~~~~L~~~i~~~------------~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~--~~-- 88 (447)
T 3pvs_A 25 LAQYIGQQHLLAAGKPLPRAIEAG------------HLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTS--GV-- 88 (447)
T ss_dssp TTTCCSCHHHHSTTSHHHHHHHHT------------CCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTC--CH--
T ss_pred HHHhCCcHHHHhchHHHHHHHHcC------------CCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccC--CH--
Confidence 45789999888 6677666654 11589999999999999999999999887766432211 10
Q ss_pred EEeecCchhHhhh-hhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCC
Q 006051 390 TAVKDGGEWMLEA-GALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPN 468 (663)
Q Consensus 390 ~~~~~~~~~~~~~-g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~ 468 (663)
.+..+....+ .....+.++|+||||++.++.+.++.|+..||++.+ .+|++|+...
T Consensus 89 ---~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~v---------------~lI~att~n~----- 145 (447)
T 3pvs_A 89 ---KEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTI---------------TFIGATTENP----- 145 (447)
T ss_dssp ---HHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTSC---------------EEEEEESSCG-----
T ss_pred ---HHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCce---------------EEEecCCCCc-----
Confidence 0001111011 111235689999999999999999999999998664 6777775431
Q ss_pred CccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCH
Q 006051 469 LSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTK 548 (663)
Q Consensus 469 ~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ 548 (663)
...+.++|++||.. +.+..++.++....+ .+.+....... ......+++
T Consensus 146 -----~~~l~~aL~sR~~v-~~l~~l~~edi~~il-~~~l~~~~~~~------------------------~~~~~~i~~ 194 (447)
T 3pvs_A 146 -----SFELNSALLSRARV-YLLKSLSTEDIEQVL-TQAMEDKTRGY------------------------GGQDIVLPD 194 (447)
T ss_dssp -----GGSSCHHHHTTEEE-EECCCCCHHHHHHHH-HHHHHCTTTSS------------------------TTSSEECCH
T ss_pred -----ccccCHHHhCceeE-EeeCCcCHHHHHHHH-HHHHHHHhhhh------------------------ccccCcCCH
Confidence 13566799999984 445444333333333 33332211000 002346889
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhcc--CCCccChhhHHHHHH
Q 006051 549 EAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLM--FRNEVTRLDAITAIL 606 (663)
Q Consensus 549 ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~--~~~~V~~~Dv~~Ai~ 606 (663)
++.+.|..+ |++++|.+.++++.+...|... ....|+.+|+..++.
T Consensus 195 ~al~~L~~~------------~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 195 ETRRAIAEL------------VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp HHHHHHHHH------------HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred HHHHHHHHH------------CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Confidence 998888877 4578999999999988887654 456899999998775
No 30
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.60 E-value=4.3e-15 Score=155.30 Aligned_cols=168 Identities=21% Similarity=0.200 Sum_probs=98.9
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc-CCceEEeCCCcccCCceEEE
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS-NRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~-~~~~~~~~~~~~~~gl~~~~ 391 (663)
..+|.|++.+|+.+.-.+...............+..++||+||||||||++|+++++.+ ..+++...........
T Consensus 11 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~---- 86 (322)
T 1xwi_A 11 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW---- 86 (322)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSS----
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhh----
Confidence 34789999998888765543221111111113445789999999999999999999987 5666554332211110
Q ss_pred eecCchhHhh--hhhhhhccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 392 VKDGGEWMLE--AGALVLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 392 ~~~~~~~~~~--~g~l~~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
. +..+.... ........++|+||||+|.+... ..+.++..|+.-. ..+.++.||+|
T Consensus 87 ~-g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~----------~~~~~v~vI~a 155 (322)
T 1xwi_A 87 L-GESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG----------VDNDGILVLGA 155 (322)
T ss_dssp C-CSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS----------SCCTTEEEEEE
T ss_pred h-hHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc----------ccCCCEEEEEe
Confidence 0 11111110 11112346789999999998432 2233444444211 11356799999
Q ss_pred eCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
||.+. .+.+++++||+..+.+ ..++.+....+.++.+
T Consensus 156 tn~~~------------~ld~al~rRf~~~i~i-~~P~~~~r~~il~~~l 192 (322)
T 1xwi_A 156 TNIPW------------VLDSAIRRRFEKRIYI-PLPEPHARAAMFKLHL 192 (322)
T ss_dssp ESCTT------------TSCHHHHHTCCEEEEC-CCCCHHHHHHHHHHHH
T ss_pred cCCcc------------cCCHHHHhhcCeEEEe-CCcCHHHHHHHHHHHH
Confidence 99874 3556999999988877 4455544444444433
No 31
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.59 E-value=3.8e-15 Score=157.86 Aligned_cols=167 Identities=20% Similarity=0.187 Sum_probs=101.8
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
..+|.|++.+|+.+..++..............++..++||+||||||||++|+++++.+..+++............
T Consensus 50 ~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~---- 125 (355)
T 2qp9_X 50 WEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM---- 125 (355)
T ss_dssp GGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC-----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhc----
Confidence 4579999999998887664321111100112345578999999999999999999999888777653321111110
Q ss_pred ecCchhHhhhhhhh---hccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 393 KDGGEWMLEAGALV---LADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 393 ~~~~~~~~~~g~l~---~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
+..+.. ....+. ...++|+||||++.+... .++.|+..|+.-. ..+.++.||+|
T Consensus 126 -g~~~~~-~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~----------~~~~~v~vI~a 193 (355)
T 2qp9_X 126 -GESEKL-VKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG----------NDSQGVLVLGA 193 (355)
T ss_dssp ---CHHH-HHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-------------CCEEEEEE
T ss_pred -chHHHH-HHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc----------ccCCCeEEEee
Confidence 111100 111122 236789999999998743 2455666665321 11346799999
Q ss_pred eCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
||... .+.+++++||+..+.+ ..++.+....+.++.+
T Consensus 194 tn~~~------------~ld~al~rRf~~~i~i-~~P~~~~r~~il~~~l 230 (355)
T 2qp9_X 194 TNIPW------------QLDSAIRRRFERRIYI-PLPDLAARTTMFEINV 230 (355)
T ss_dssp ESCGG------------GSCHHHHHTCCEEEEC-CCCCHHHHHHHHHHHH
T ss_pred cCCcc------------cCCHHHHcccCEEEEe-CCcCHHHHHHHHHHHH
Confidence 99863 4567999999988877 4455544444444443
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.59 E-value=1.7e-15 Score=169.30 Aligned_cols=247 Identities=21% Similarity=0.188 Sum_probs=142.8
Q ss_pred hhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccC--C
Q 006051 309 LRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSA--G 386 (663)
Q Consensus 309 ~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~--g 386 (663)
.+.+..+++|++.+|+.+.-.+....-. ... ...++||+||||||||++|++++..++.++.....+.... .
T Consensus 76 ~~~l~~di~G~~~vk~~i~~~~~l~~~~-----~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~ 149 (543)
T 3m6a_A 76 GRLLDEEHHGLEKVKERILEYLAVQKLT-----KSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESE 149 (543)
T ss_dssp GGTHHHHCSSCHHHHHHHHHHHHHHHHS-----SSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC------
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhc-----ccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhh
Confidence 3445667999999998875433321000 011 2368999999999999999999999988877665433211 0
Q ss_pred ceEEEeecCchhHhhh-hhhhhc--cCCeeecccccccChhh----HHhHHHHHHhceeee-eccCceeecC-CcEEEEE
Q 006051 387 LTVTAVKDGGEWMLEA-GALVLA--DGGLCCIDEFDSMREHD----RATIHEAMEQQTISV-AKAGLVTTLS-TRTIIFG 457 (663)
Q Consensus 387 l~~~~~~~~~~~~~~~-g~l~~a--~~gvl~iDEid~l~~~~----~~~L~~~me~~~i~i-~k~g~~~~~~-~~~~iia 457 (663)
+........|...... ..+..+ .++|+||||++++..+. ++.|++.|+.+.... ...+.....+ .++.+|+
T Consensus 150 ~~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ 229 (543)
T 3m6a_A 150 IRGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIA 229 (543)
T ss_dssp --------------CHHHHHHTTCSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEE
T ss_pred hhhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeecccceEEEe
Confidence 1000000001110000 112222 67899999999998874 478888887654321 2222222222 5789999
Q ss_pred eeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 006051 458 ATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYF 537 (663)
Q Consensus 458 atN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 537 (663)
|||+.. .++++|++||+ ++.+..++.++...++..|++.. ++..
T Consensus 230 ttN~~~------------~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~-----------------------~~~~ 273 (543)
T 3m6a_A 230 TANNLA------------TIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPK-----------------------QIKE 273 (543)
T ss_dssp ECSSTT------------TSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHH-----------------------HHHH
T ss_pred ccCccc------------cCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHH-----------------------HHHH
Confidence 999873 46679999997 45664544444444444444321 1111
Q ss_pred HH-ccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhcc------CCCccChhhHHHHHHH
Q 006051 538 VK-GYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLM------FRNEVTRLDAITAILC 607 (663)
Q Consensus 538 ~r-~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~------~~~~V~~~Dv~~Ai~l 607 (663)
.. ......+++++...|...| .|+.++|.|++.++-+...|... ..-.|+.+|+..++.-
T Consensus 274 ~~~~~~~i~i~~~~l~~l~~~~----------~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 274 HGLKKSNLQLRDQAILDIIRYY----------TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp TTCCGGGCEECHHHHHHHHHHH----------CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred cCCCcccccCCHHHHHHHHHhC----------ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 10 0012357888887776654 67888999988776554444332 3447999999988743
No 33
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.59 E-value=1.9e-15 Score=176.22 Aligned_cols=228 Identities=14% Similarity=0.139 Sum_probs=141.7
Q ss_pred hccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc---CCceEEeCCCcccCC
Q 006051 310 RGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAG 386 (663)
Q Consensus 310 ~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~~g 386 (663)
+.+...++|++.++.++.-++...... .....++..++||+||||||||++|+++++.+ ..+++...++.....
T Consensus 487 ~~l~~~viGq~~a~~~l~~~i~~~~~~---~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 487 NILHSRVIGQDEAVVAVAKAVRRARAG---LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563 (758)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHTTT---CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSS
T ss_pred HHHhCcCcChHHHHHHHHHHHHHHHcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccc
Confidence 345567899998888777666432100 01112232379999999999999999999986 455666555433322
Q ss_pred ceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCC
Q 006051 387 LTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 387 l~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d 466 (663)
...+ .+.. .+++..+.++|+||||+++++++.++.|+++|++|.++.. +.......++.+|+|||......
T Consensus 564 ~~~~----~~~l---~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~--~g~~~~~~~~~iI~ttn~~~~~~ 634 (758)
T 3pxi_A 564 HSTS----GGQL---TEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDS--KGRTVDFRNTILIMTSNVGASEK 634 (758)
T ss_dssp CCCC-------C---HHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCC
T ss_pred cccc----cchh---hHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcC--CCCEeccCCeEEEEeCCCChhhH
Confidence 2211 1111 2344556789999999999999999999999999987543 33334457889999999752210
Q ss_pred CCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHH-HHHccCCCc
Q 006051 467 PNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIY-FVKGYFKPI 545 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~-~~r~~~~p~ 545 (663)
..........+.++|++|||.++.+..+..++... +..+.+. ++.. +.+......
T Consensus 635 ~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~-i~~~~l~-----------------------~~~~~~~~~~~~~~ 690 (758)
T 3pxi_A 635 DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTE-IVSLMSD-----------------------QLTKRLKEQDLSIE 690 (758)
T ss_dssp HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHH-HHHHHHH-----------------------HHHHHHHTTTCEEE
T ss_pred HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHH-HHHHHHH-----------------------HHHHHHHhCCCeEE
Confidence 00000011237789999999888775554433333 3333222 1111 111234567
Q ss_pred cCHHHHHHHHHH-HHHHHhcccCCCccccHhHHHHHHHH
Q 006051 546 LTKEAEKVISSY-YQLQRRSATQNAARTTVRMLESLIRL 583 (663)
Q Consensus 546 ls~ea~~~l~~~-y~~~r~~~~~~~~~~t~R~Le~lirl 583 (663)
+++++.+.|... | .|+.++|.|+++|+-
T Consensus 691 ~~~~a~~~l~~~~~----------~~~~~~R~L~~~i~~ 719 (758)
T 3pxi_A 691 LTDAAKAKVAEEGV----------DLEYGARPLRRAIQK 719 (758)
T ss_dssp ECHHHHHHHHGGGC----------CTTTTTTTHHHHHHH
T ss_pred ECHHHHHHHHHhCC----------CCCCCChHHHHHHHH
Confidence 999999988642 1 689999999999874
No 34
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.58 E-value=1.3e-14 Score=149.86 Aligned_cols=169 Identities=17% Similarity=0.177 Sum_probs=99.7
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
..+|.|++.+|+.+...+..+............++.++||+||||||||++|+++++.+..+++............
T Consensus 20 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~---- 95 (297)
T 3b9p_A 20 WTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYV---- 95 (297)
T ss_dssp GGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSC----
T ss_pred HHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhccc----
Confidence 4578999999998877664321110000001123578999999999999999999999888777654432211111
Q ss_pred ecCchhH--hhhhhhhhccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEee
Q 006051 393 KDGGEWM--LEAGALVLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (663)
Q Consensus 393 ~~~~~~~--~~~g~l~~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat 459 (663)
+.+... ...+......++|+||||++.+... .+..++..|+..... ....++.+|+||
T Consensus 96 -~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~--------~~~~~v~vi~~t 166 (297)
T 3b9p_A 96 -GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN--------PDGDRIVVLAAT 166 (297)
T ss_dssp -SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC--------------CEEEEEEE
T ss_pred -chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc--------CCCCcEEEEeec
Confidence 111100 0111122346789999999998432 334456666542210 112457899999
Q ss_pred CCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHH
Q 006051 460 NPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHI 507 (663)
Q Consensus 460 N~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~i 507 (663)
|... .+.+++++||+..+.+ ..++.+....+..++
T Consensus 167 n~~~------------~l~~~l~~R~~~~i~~-~~p~~~~r~~il~~~ 201 (297)
T 3b9p_A 167 NRPQ------------ELDEAALRRFTKRVYV-SLPDEQTRELLLNRL 201 (297)
T ss_dssp SCGG------------GBCHHHHHHCCEEEEC-CCCCHHHHHHHHHHH
T ss_pred CChh------------hCCHHHHhhCCeEEEe-CCcCHHHHHHHHHHH
Confidence 9863 3556999999987776 445544444443333
No 35
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=1.3e-14 Score=148.89 Aligned_cols=230 Identities=18% Similarity=0.126 Sum_probs=137.2
Q ss_pred cccCchhHHHHHHHHHHhCCceee-cCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.+|.|++.+|+.+...+....... ...........++||+||||||||++|+++++..+.+++...........
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~----- 91 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKF----- 91 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCS-----
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhc-----
Confidence 468899888887765553210000 00000123457899999999999999999999988887765332211110
Q ss_pred ecCchhHh--hhhhhhhccCCeeeccccccc-----------ChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEee
Q 006051 393 KDGGEWML--EAGALVLADGGLCCIDEFDSM-----------REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (663)
Q Consensus 393 ~~~~~~~~--~~g~l~~a~~gvl~iDEid~l-----------~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat 459 (663)
.+...... .........++|+||||++.+ ....+..+...++...- . ..+.++.+|+||
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~------~--~~~~~~~vI~tt 163 (285)
T 3h4m_A 92 IGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDG------F--DARGDVKIIGAT 163 (285)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHT------T--CSSSSEEEEEEC
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhC------C--CCCCCEEEEEeC
Confidence 00000000 011112235579999999998 34455666666654210 0 113467999999
Q ss_pred CCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 006051 460 NPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYF 537 (663)
Q Consensus 460 N~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ 537 (663)
|+.. .+++++++ ||+.++.+..+..++... +.++.+....
T Consensus 164 n~~~------------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~-il~~~~~~~~------------------------- 205 (285)
T 3h4m_A 164 NRPD------------ILDPAILRPGRFDRIIEVPAPDEKGRLE-ILKIHTRKMN------------------------- 205 (285)
T ss_dssp SCGG------------GBCHHHHSTTSEEEEEECCCCCHHHHHH-HHHHHHTTSC-------------------------
T ss_pred CCch------------hcCHHHcCCCcCCeEEEECCCCHHHHHH-HHHHHHhcCC-------------------------
Confidence 9863 35568988 999988774444333333 3333222111
Q ss_pred HHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 538 VKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 538 ~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
+.+.. ....|... ....+.|.++.+++.|...|..+.++.|+.+|+..|+.-+....
T Consensus 206 ----~~~~~---~~~~l~~~-----------~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 206 ----LAEDV---NLEEIAKM-----------TEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp ----BCTTC---CHHHHHHH-----------CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHH
T ss_pred ----CCCcC---CHHHHHHH-----------cCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcc
Confidence 00000 11111111 12346899999999999999999999999999999998775543
No 36
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.57 E-value=2.1e-14 Score=154.27 Aligned_cols=168 Identities=21% Similarity=0.219 Sum_probs=100.5
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
..+|+|++.+++.+...+..................++||+||||||||++|+++++..+.+++............
T Consensus 114 ~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~---- 189 (389)
T 3vfd_A 114 FDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYV---- 189 (389)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---------
T ss_pred hHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcccc----
Confidence 4578999999988877664321110000001123479999999999999999999999998888765543221111
Q ss_pred ecCchhHhhhhhh---hhccCCeeecccccccC-----------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 393 KDGGEWMLEAGAL---VLADGGLCCIDEFDSMR-----------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 393 ~~~~~~~~~~g~l---~~a~~gvl~iDEid~l~-----------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
+..+. ...+.+ ....++|+||||+|.+. ...+..++..|+... ...+.++.||+|
T Consensus 190 -g~~~~-~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~~~~~~v~vI~a 258 (389)
T 3vfd_A 190 -GEGEK-LVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQ---------SAGDDRVLVMGA 258 (389)
T ss_dssp ---CHH-HHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC--------------CEEEEEE
T ss_pred -chHHH-HHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhccc---------ccCCCCEEEEEe
Confidence 11110 011111 22356899999999982 334445666665322 122467899999
Q ss_pred eCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
||+.. .+.+++++||+.++.+ ..++.+....+..+++
T Consensus 259 tn~~~------------~l~~~l~~R~~~~i~i-~~p~~~~r~~il~~~~ 295 (389)
T 3vfd_A 259 TNRPQ------------ELDEAVLRRFIKRVYV-SLPNEETRLLLLKNLL 295 (389)
T ss_dssp ESCGG------------GCCHHHHTTCCEEEEC-CCCCHHHHHHHHHHHH
T ss_pred cCCch------------hcCHHHHcCcceEEEc-CCcCHHHHHHHHHHHH
Confidence 99863 4567999999977766 4445444444444444
No 37
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.57 E-value=2.1e-14 Score=153.03 Aligned_cols=141 Identities=18% Similarity=0.097 Sum_probs=92.7
Q ss_pred CCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhh
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVL 489 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~ 489 (663)
++|+||||++.++.+.++.|+..+++... .+ ++.++|+.-.+-..........++++|++||.. +
T Consensus 190 ~~vl~IDEi~~l~~~~~~~L~~~le~~~~-------------~~-~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i 254 (368)
T 3uk6_A 190 PGVLFIDEVHMLDIESFSFLNRALESDMA-------------PV-LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-V 254 (368)
T ss_dssp BCEEEEESGGGSBHHHHHHHHHHTTCTTC-------------CE-EEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-E
T ss_pred CceEEEhhccccChHHHHHHHHHhhCcCC-------------Ce-eeeecccceeeeeccCCCCcccCCHHHHhhccE-E
Confidence 47999999999999999999999986432 22 233333210000000000113577899999987 4
Q ss_pred hhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCC
Q 006051 490 VLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNA 569 (663)
Q Consensus 490 ~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~ 569 (663)
.+..+..++. ..++...-......+++++.+.|.++ .
T Consensus 255 ~~~~~~~~e~--------------------------------~~il~~~~~~~~~~~~~~~l~~l~~~-----------~ 291 (368)
T 3uk6_A 255 STTPYSEKDT--------------------------------KQILRIRCEEEDVEMSEDAYTVLTRI-----------G 291 (368)
T ss_dssp EECCCCHHHH--------------------------------HHHHHHHHHHTTCCBCHHHHHHHHHH-----------H
T ss_pred EecCCCHHHH--------------------------------HHHHHHHHHHcCCCCCHHHHHHHHHH-----------h
Confidence 5533332222 22222111112346888888888877 3
Q ss_pred ccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 570 ARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 570 ~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
+++++|.+..+++.|...|....+..|+.+|+..|+..+
T Consensus 292 ~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 292 LETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 446899999999999999999999999999999999864
No 38
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.57 E-value=1.9e-14 Score=145.58 Aligned_cols=231 Identities=16% Similarity=0.134 Sum_probs=123.0
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
+.+|+|++.+|+.+.-.+................+.++||+||||||||++|+++++....+++...........
T Consensus 5 ~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~----- 79 (262)
T 2qz4_A 5 FKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI----- 79 (262)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS-----
T ss_pred HHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc-----
Confidence 357899999988875433221000000111224457899999999999999999999888877765443221100
Q ss_pred ecCchhHhhhhhhhhc---cCCeeecccccccC------------hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEE
Q 006051 393 KDGGEWMLEAGALVLA---DGGLCCIDEFDSMR------------EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (663)
Q Consensus 393 ~~~~~~~~~~g~l~~a---~~gvl~iDEid~l~------------~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iia 457 (663)
.+.+... ..+.+..+ .++|+||||++.+. ...+..+.+.++.-. +. ..+.++.+|+
T Consensus 80 ~~~~~~~-~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~------~~--~~~~~~~vi~ 150 (262)
T 2qz4_A 80 GGLGAAR-VRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMD------GM--GTTDHVIVLA 150 (262)
T ss_dssp TTHHHHH-HHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHH------TC--CTTCCEEEEE
T ss_pred cChhHHH-HHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhh------Cc--CCCCCEEEEe
Confidence 0001110 11222222 36899999999983 233344444444210 00 0134679999
Q ss_pred eeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHH
Q 006051 458 ATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYI 535 (663)
Q Consensus 458 atN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i 535 (663)
|+|.... +++++++ ||+..+.+ ..++.+....+.++.+....
T Consensus 151 ~tn~~~~------------ld~~l~~~~R~~~~i~i-~~p~~~~r~~il~~~~~~~~----------------------- 194 (262)
T 2qz4_A 151 STNRADI------------LDGALMRPGRLDRHVFI-DLPTLQERREIFEQHLKSLK----------------------- 194 (262)
T ss_dssp EESCGGG------------GGSGGGSTTSCCEEEEC-CSCCHHHHHHHHHHHHHHTT-----------------------
T ss_pred cCCChhh------------cCHHHhcCCcCCeEEEe-CCcCHHHHHHHHHHHHHhCC-----------------------
Confidence 9998632 3457888 99988877 44444433334333333211
Q ss_pred HHHHccCCCccCHHH-HHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 536 YFVKGYFKPILTKEA-EKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 536 ~~~r~~~~p~ls~ea-~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
...+.+. ...+... ....+.+.+..+++.|...|..+.+..|+.+|+..|+.-+..+.
T Consensus 195 --------~~~~~~~~~~~l~~~-----------~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~ 253 (262)
T 2qz4_A 195 --------LTQSSTFYSQRLAEL-----------TPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGT 253 (262)
T ss_dssp --------CCBTHHHHHHHHHHT-----------CTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHHHHHHHH
T ss_pred --------CCcchhhHHHHHHHH-----------CCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccCh
Confidence 1112111 1112111 12345789999999988888888888999999999998765543
No 39
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.56 E-value=3.1e-14 Score=151.10 Aligned_cols=244 Identities=16% Similarity=0.137 Sum_probs=133.4
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
..+|.|++.+|+.+.-.+..............+...++||+||||||||++|+++++.+..+++...........
T Consensus 83 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~----- 157 (357)
T 3d8b_A 83 WEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKW----- 157 (357)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSS-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccc-----
Confidence 347899999998887766432111110000123457899999999999999999999988877765433211110
Q ss_pred ecCchhHhh--hhhhhhccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEee
Q 006051 393 KDGGEWMLE--AGALVLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (663)
Q Consensus 393 ~~~~~~~~~--~g~l~~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat 459 (663)
.+..+.... ........++|+||||++.+... .++.++..|+... ...+.++.||+||
T Consensus 158 ~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~---------~~~~~~v~vI~at 228 (357)
T 3d8b_A 158 VGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGAT---------TSSEDRILVVGAT 228 (357)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-------------CCCCEEEEEEE
T ss_pred cchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccc---------ccCCCCEEEEEec
Confidence 000100000 11112245789999999998432 2344555554321 1224578999999
Q ss_pred CCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 006051 460 NPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVK 539 (663)
Q Consensus 460 N~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r 539 (663)
|+.. .+.+++++||+..+.+. .++.+....+..+++.... ..++.+.+..+...+
T Consensus 229 n~~~------------~l~~~l~~Rf~~~i~i~-~p~~~~r~~il~~~~~~~~-----------~~l~~~~l~~la~~t- 283 (357)
T 3d8b_A 229 NRPQ------------EIDEAARRRLVKRLYIP-LPEASARKQIVINLMSKEQ-----------CCLSEEEIEQIVQQS- 283 (357)
T ss_dssp SCGG------------GBCHHHHTTCCEEEECC-CCCHHHHHHHHHHHHHTSC-----------BCCCHHHHHHHHHHT-
T ss_pred CChh------------hCCHHHHhhCceEEEeC-CcCHHHHHHHHHHHHhhcC-----------CCccHHHHHHHHHHc-
Confidence 9863 35579999999777764 4444444444444443221 124555555554332
Q ss_pred ccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhhh
Q 006051 540 GYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSMT 613 (663)
Q Consensus 540 ~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~~ 613 (663)
..++......|.++ .|...+|++.+....+ ....-...|+.+|+..|+.-+..|..
T Consensus 284 ----~G~s~~dl~~l~~~-----------a~~~~ir~l~~~~~~~---~~~~~~~~i~~~d~~~al~~~~ps~~ 339 (357)
T 3d8b_A 284 ----DAFSGADMTQLCRE-----------ASLGPIRSLQTADIAT---ITPDQVRPIAYIDFENAFRTVRPSVS 339 (357)
T ss_dssp ----TTCCHHHHHHHHHH-----------HHTHHHHHCCC-------------CCCBCHHHHHHHHHHHGGGCC
T ss_pred ----CCCCHHHHHHHHHH-----------HHHHHHHHhhhhhhcc---ccccccCCcCHHHHHHHHHhcCCCCC
Confidence 24455444444433 1222333332211111 11122457999999999987766543
No 40
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.53 E-value=2.7e-14 Score=155.88 Aligned_cols=169 Identities=20% Similarity=0.144 Sum_probs=97.9
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc-CCceEEeCCCcccCCceEEE
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS-NRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~-~~~~~~~~~~~~~~gl~~~~ 391 (663)
..+|.|++.+|..+...+..............++..++||+||||||||++|+++++.+ ..+++.......... .
T Consensus 133 ~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~----~ 208 (444)
T 2zan_A 133 WSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSK----W 208 (444)
T ss_dssp GGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----------
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhh----h
Confidence 35789999999988876643211111001113345789999999999999999999988 666665543321111 1
Q ss_pred eecC-chhHhhhhhhhhccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEee
Q 006051 392 VKDG-GEWMLEAGALVLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGAT 459 (663)
Q Consensus 392 ~~~~-~~~~~~~g~l~~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaat 459 (663)
.... ..............++|+||||++.+... ..+.++..|+.- ...+.++.||+||
T Consensus 209 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~----------~~~~~~v~vI~at 278 (444)
T 2zan_A 209 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGV----------GVDNDGILVLGAT 278 (444)
T ss_dssp ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCS----------SCCCSSCEEEEEE
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCc----------ccCCCCEEEEecC
Confidence 1111 11100111122346789999999998432 222233333211 0124567999999
Q ss_pred CCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 460 NPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 460 N~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
|++. .+.+++++||+.++.+ +.++.+....+..+.+
T Consensus 279 n~~~------------~ld~al~rRf~~~i~i-~~P~~~~r~~il~~~l 314 (444)
T 2zan_A 279 NIPW------------VLDSAIRRRFEKRIYI-PLPEAHARAAMFRLHL 314 (444)
T ss_dssp SCGG------------GSCHHHHTTCCEEEEC-CCCCHHHHHHHHHHHH
T ss_pred CCcc------------ccCHHHHhhcceEEEe-CCcCHHHHHHHHHHHH
Confidence 9873 3567999999988877 4555554444444433
No 41
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.51 E-value=3.9e-14 Score=167.12 Aligned_cols=232 Identities=16% Similarity=0.124 Sum_probs=142.6
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc---CCceEEeCCCcccCCceE
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTV 389 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~~gl~~ 389 (663)
...|+|++.++..+..++...... .....++..++||+||||||||++|+++++.+ ..+++...++........
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g---~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGG---CSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 346899998877776655431000 00112333589999999999999999999987 456776665543322221
Q ss_pred EEeecC-----c--hhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 390 TAVKDG-----G--EWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 390 ~~~~~~-----~--~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
+.+.+. | +...-.+++..+.+||+||||+++++++.++.|+++|+++.++.. .|....+ .++.||+|||..
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~-~g~~vd~-~~~iiI~tsn~~ 711 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDS-HGRTVDF-RNTVIILTSNLG 711 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCS-SSCCEEC-TTEEEEEECCTT
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECC-CCCEecc-CCeEEEEecCcC
Confidence 111110 0 000012334445689999999999999999999999999987532 2322222 467899999973
Q ss_pred C-CC-C----CC--Cccc------cccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCH
Q 006051 463 G-HY-D----PN--LSLS------VNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPL 528 (663)
Q Consensus 463 g-~~-d----~~--~~~~------~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~ 528 (663)
. .+ + .. ..+. ....+.++|++|||.++.+... +.+--..+..+.+..
T Consensus 712 ~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl-~~edi~~i~~~~l~~------------------ 772 (854)
T 1qvr_A 712 SPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPL-TKEQIRQIVEIQLSY------------------ 772 (854)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCC-CHHHHHHHHHHHHHH------------------
T ss_pred hHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCC-CHHHHHHHHHHHHHH------------------
Confidence 1 00 0 00 0001 1235778999999988877554 333333333333321
Q ss_pred HHHHHHHH-HHHccCCCccCHHHHHHHHHHHHHHHhcccCCCc--cccHhHHHHHHHHH
Q 006051 529 AMLRRYIY-FVKGYFKPILTKEAEKVISSYYQLQRRSATQNAA--RTTVRMLESLIRLA 584 (663)
Q Consensus 529 ~~l~~~i~-~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~--~~t~R~Le~lirla 584 (663)
+.. +.+..+.+.+++++.+.|..+ +| ++++|.|+++++-+
T Consensus 773 -----~~~~~~~~~~~~~~~~~a~~~L~~~-----------~~~~~gn~R~L~~~i~~~ 815 (854)
T 1qvr_A 773 -----LRARLAEKRISLELTEAAKDFLAER-----------GYDPVFGARPLRRVIQRE 815 (854)
T ss_dssp -----HHHHHHTTTCEEEECHHHHHHHHHH-----------HCBTTTBTSTHHHHHHHH
T ss_pred -----HHHHHHhCCceEEECHHHHHHHHHc-----------CCCCCCChHHHHHHHHHH
Confidence 111 112233567999999999987 45 89999999998765
No 42
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.47 E-value=1.2e-12 Score=137.56 Aligned_cols=220 Identities=23% Similarity=0.306 Sum_probs=139.8
Q ss_pred ccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeec
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKD 394 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~ 394 (663)
.++|++.++..+-..+-.|... | ....+++|+||||+|||+|++.+++..+..+...... . ...
T Consensus 26 ~~~g~~~~~~~l~~~i~~~~~~----~---~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~-----~----~~~ 89 (334)
T 1in4_A 26 EFIGQENVKKKLSLALEAAKMR----G---EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP-----V----LVK 89 (334)
T ss_dssp GCCSCHHHHHHHHHHHHHHHHH----T---CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETT-----T----CCS
T ss_pred HccCcHHHHHHHHHHHHHHHhc----C---CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEech-----H----hcC
Confidence 5689998888888777543110 0 1226899999999999999999999876554322110 0 000
Q ss_pred CchhHhhhhhh-hhccCCeeecccccccChhhHHhHHHHHHhceeeee--cc---CceeecCCcEEEEEeeCCCCCCCCC
Q 006051 395 GGEWMLEAGAL-VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVA--KA---GLVTTLSTRTIIFGATNPKGHYDPN 468 (663)
Q Consensus 395 ~~~~~~~~g~l-~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~--k~---g~~~~~~~~~~iiaatN~~g~~d~~ 468 (663)
.+.. .+.+ ....+.|+||||++.+.+..++.|+..|+...+.+. .. .........+.+++++|..+
T Consensus 90 ~~~l---~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~----- 161 (334)
T 1in4_A 90 QGDM---AAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG----- 161 (334)
T ss_dssp HHHH---HHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG-----
T ss_pred HHHH---HHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc-----
Confidence 1111 0111 123578999999999998888889888887643211 00 01111123567778888652
Q ss_pred CccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCH
Q 006051 469 LSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTK 548 (663)
Q Consensus 469 ~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ 548 (663)
.+++++++||.+.+.+ ++.+ .+.+..++....+.....+++
T Consensus 162 -------~Ls~~l~sR~~l~~~L-d~~~-------------------------------~~~l~~iL~~~~~~~~~~~~~ 202 (334)
T 1in4_A 162 -------LLSSPLRSRFGIILEL-DFYT-------------------------------VKELKEIIKRAASLMDVEIED 202 (334)
T ss_dssp -------GSCHHHHTTCSEEEEC-CCCC-------------------------------HHHHHHHHHHHHHHTTCCBCH
T ss_pred -------cCCHHHHHhcCceeeC-CCCC-------------------------------HHHHHHHHHHHHHHcCCCcCH
Confidence 5677999999877655 3332 222333332221223345777
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHH
Q 006051 549 EAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 549 ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~ 609 (663)
++...|.+. ..+++|.+.++++.+...|.+..+..|+.+++..|+..++
T Consensus 203 ~~~~~ia~~------------~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~ 251 (334)
T 1in4_A 203 AAAEMIAKR------------SRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLN 251 (334)
T ss_dssp HHHHHHHHT------------STTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHh------------cCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhC
Confidence 776666542 2467899999999999999888888999999999988764
No 43
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.46 E-value=1.8e-13 Score=147.02 Aligned_cols=143 Identities=17% Similarity=0.225 Sum_probs=85.9
Q ss_pred hhc-cCCeeecccccccChh------------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccc
Q 006051 406 VLA-DGGLCCIDEFDSMREH------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLS 472 (663)
Q Consensus 406 ~~a-~~gvl~iDEid~l~~~------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~ 472 (663)
..| .+|++++||||++... .|.+|+++||...++. +.+.. -..++.+|+|.... ....
T Consensus 246 ~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~-~~~~~--d~~~ilfI~~gaf~----~~~~-- 316 (444)
T 1g41_A 246 DAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST-KHGMV--KTDHILFIASGAFQ----VARP-- 316 (444)
T ss_dssp HHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEE-TTEEE--ECTTCEEEEEECCS----SCCG--
T ss_pred HHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccc-cccee--cCCcEEEEeccccc----cCCh--
Confidence 344 6889999999999643 5679999999766544 33211 13456788876211 0000
Q ss_pred cccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHH-ccCCCccCHHHH
Q 006051 473 VNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVK-GYFKPILTKEAE 551 (663)
Q Consensus 473 ~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r-~~~~p~ls~ea~ 551 (663)
..+-|+|++||+.++.+.+...++.-+++. ... ...+++|..... ....-.++++|.
T Consensus 317 --~dlipel~~R~~i~i~l~~lt~~e~~~Il~-----~~~---------------~~l~~q~~~~~~~~~~~l~~~~~al 374 (444)
T 1g41_A 317 --SDLIPELQGRLPIRVELTALSAADFERILT-----EPH---------------ASLTEQYKALMATEGVNIAFTTDAV 374 (444)
T ss_dssp --GGSCHHHHTTCCEEEECCCCCHHHHHHHHH-----SST---------------TCHHHHHHHHHHTTTCEEEECHHHH
T ss_pred --hhcchHHhcccceeeeCCCCCHHHHHHHHH-----HHH---------------HhHHHHHHHHhcccCceEEECHHHH
Confidence 124489999999999887766655544432 110 123455543332 234557999999
Q ss_pred HHHHHHHHHHHhcccCCCccccHhHHHHHHHH
Q 006051 552 KVISSYYQLQRRSATQNAARTTVRMLESLIRL 583 (663)
Q Consensus 552 ~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirl 583 (663)
..|.+.+...... ...+..|.|++++.-
T Consensus 375 ~~i~~~a~~~~~~----t~~~GaR~L~~~ie~ 402 (444)
T 1g41_A 375 KKIAEAAFRVNEK----TENIGARRLHTVMER 402 (444)
T ss_dssp HHHHHHHHHHHHH----SCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHhccC----CccCCchHHHHHHHH
Confidence 8888765443221 112347777666653
No 44
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.46 E-value=3.1e-13 Score=147.38 Aligned_cols=220 Identities=20% Similarity=0.146 Sum_probs=127.2
Q ss_pred ccccCchhHHHHHHHHHHh--CCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 313 CPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
+.+|.|++.+|..+.-.+. ........ ...+.+.++||+||||||||++|++++...+.+++..........+
T Consensus 15 f~di~G~~~~~~~l~e~v~~l~~~~~~~~--~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~--- 89 (476)
T 2ce7_A 15 FKDVGGAEEAIEELKEVVEFLKDPSKFNR--IGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF--- 89 (476)
T ss_dssp GGGCCSCHHHHHHHHHHHHHHHCTHHHHT--TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC---
T ss_pred HHHhCCcHHHHHHHHHHHHHhhChHHHhh--cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH---
Confidence 3478898888776654322 11111111 1223446799999999999999999999988887765332211110
Q ss_pred EeecCchhHhhhhhhhhc---cCCeeecccccccChh--------------hHHhHHHHHHhceeeeeccCceeecCCcE
Q 006051 391 AVKDGGEWMLEAGALVLA---DGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTRT 453 (663)
Q Consensus 391 ~~~~~~~~~~~~g~l~~a---~~gvl~iDEid~l~~~--------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~ 453 (663)
.+.+... ..+.+..| .++|+||||+|.+... .++.|+..|+.-. -+.++
T Consensus 90 --~g~~~~~-~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~-----------~~~~v 155 (476)
T 2ce7_A 90 --VGVGAAR-VRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD-----------SKEGI 155 (476)
T ss_dssp --TTHHHHH-HHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC-----------GGGTE
T ss_pred --hcccHHH-HHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC-----------CCCCE
Confidence 0111111 11223333 4679999999998543 2345555565211 13467
Q ss_pred EEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHH
Q 006051 454 IIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAML 531 (663)
Q Consensus 454 ~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l 531 (663)
.||+|||.+.. +.+++++ |||..+.+ +.|+.+....|.++.++...
T Consensus 156 iVIaaTn~~~~------------Ld~allR~gRFd~~i~i-~~Pd~~~R~~Il~~~~~~~~------------------- 203 (476)
T 2ce7_A 156 IVMAATNRPDI------------LDPALLRPGRFDKKIVV-DPPDMLGRKKILEIHTRNKP------------------- 203 (476)
T ss_dssp EEEEEESCGGG------------SCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHHTTSC-------------------
T ss_pred EEEEecCChhh------------hchhhcccCcceeEeec-CCCCHHHHHHHHHHHHHhCC-------------------
Confidence 99999998733 4457876 99988877 44554433333332222110
Q ss_pred HHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccc-cHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 532 RRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAART-TVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 532 ~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~-t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
+.+.++ ...|.. .|++ +.|.|+++++-|...|..+.+..|+.+|+..|+.-+
T Consensus 204 ----------l~~~v~---l~~la~------------~t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 204 ----------LAEDVN---LEIIAK------------RTPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp ----------BCTTCC---HHHHHH------------TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred ----------Ccchhh---HHHHHH------------hcCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 000111 111111 1333 347888888888777776667788888888888655
No 45
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.45 E-value=3.7e-13 Score=147.51 Aligned_cols=141 Identities=15% Similarity=0.114 Sum_probs=96.6
Q ss_pred CeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC----CCCCCCCccccccCCChhhhhhhh
Q 006051 411 GLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK----GHYDPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 411 gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~----g~~d~~~~~~~~~~l~~aLl~RFd 486 (663)
+|++|||+++|+.+.+++|+..||+.. ..+ +|.++|+. |--+ .+.....++++++|||.
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~-------------~~~-~il~tn~~~~~i~~~~---~~~~~~~l~~~i~sR~~ 359 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSI-------------API-VIFASNRGNCVIRGTE---DITSPHGIPLDLLDRVM 359 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTT-------------CCE-EEEEECCSEEECBTTS---SCEEETTCCHHHHTTEE
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccC-------------CCE-EEEecCCccccccccc---cccccccCChhHHhhcc
Confidence 799999999999999999999999643 233 44344652 1101 11223478899999997
Q ss_pred hhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhccc
Q 006051 487 IVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSAT 566 (663)
Q Consensus 487 li~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~ 566 (663)
.+ .+.++. .+.+..++...-......+++++...|.++..
T Consensus 360 ~~-~~~~~~--------------------------------~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~------- 399 (456)
T 2c9o_A 360 II-RTMLYT--------------------------------PQEMKQIIKIRAQTEGINISEEALNHLGEIGT------- 399 (456)
T ss_dssp EE-ECCCCC--------------------------------HHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH-------
T ss_pred ee-eCCCCC--------------------------------HHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcc-------
Confidence 74 553333 33333333221111133578888888877521
Q ss_pred CCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHHhhh
Q 006051 567 QNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIESSM 612 (663)
Q Consensus 567 ~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~~s~ 612 (663)
.+++|....+++.|.+.|.++.+..|+.+||..|..++-...
T Consensus 400 ----~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d~~ 441 (456)
T 2c9o_A 400 ----KTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYDAK 441 (456)
T ss_dssp ----HSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCCHH
T ss_pred ----CCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcChH
Confidence 246999999999999999999999999999999998874433
No 46
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.45 E-value=1.8e-13 Score=150.41 Aligned_cols=158 Identities=19% Similarity=0.149 Sum_probs=99.1
Q ss_pred cccCchhHHHHHHHHHHhCCceee-cCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHV-DASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~-~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.+|.|++..++.+.-.+....... .........+.++||+||||||||++|+++++.++.+++...+......+.
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~---- 279 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLA---- 279 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCT----
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhc----
Confidence 468999887777755443210000 000001234578999999999999999999999988887754432211111
Q ss_pred ecCchh-Hhhhhhhhhc---cCCeeecccccccCh-----------hhHHhHHHHHHhceeeeeccCceeecCCcEEEEE
Q 006051 393 KDGGEW-MLEAGALVLA---DGGLCCIDEFDSMRE-----------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFG 457 (663)
Q Consensus 393 ~~~~~~-~~~~g~l~~a---~~gvl~iDEid~l~~-----------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iia 457 (663)
|+. ....+.+..| .++++||||+|.+.. ..+..|+..|+... .+.++.||+
T Consensus 280 ---g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-----------~~~~v~vIa 345 (489)
T 3hu3_A 280 ---GESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVMA 345 (489)
T ss_dssp ---THHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC-----------TTSCEEEEE
T ss_pred ---chhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc-----------cCCceEEEE
Confidence 111 1113344444 346999999987754 45677888888532 245789999
Q ss_pred eeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHH
Q 006051 458 ATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDA 501 (663)
Q Consensus 458 atN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~ 501 (663)
|||+.. .+.+++++ ||+..+.+..++.++...
T Consensus 346 aTn~~~------------~Ld~al~r~gRf~~~i~i~~P~~~eR~~ 379 (489)
T 3hu3_A 346 ATNRPN------------SIDPALRRFGRFDREVDIGIPDATGRLE 379 (489)
T ss_dssp EESCGG------------GBCGGGGSTTSSCEEEECCCCCHHHHHH
T ss_pred ecCCcc------------ccCHHHhCCCcCceEEEeCCCCHHHHHH
Confidence 999863 34568888 999888774444333333
No 47
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.45 E-value=6.6e-13 Score=129.97 Aligned_cols=199 Identities=17% Similarity=0.096 Sum_probs=125.0
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC-----CceEEeCCCcccCC
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTSAG 386 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~-----~~~~~~~~~~~~~g 386 (663)
...+++|++..+..+.-.+..+ ...++||+||||||||++++.+++... ..++....... .+
T Consensus 15 ~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~-~~ 81 (226)
T 2chg_A 15 TLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE-RG 81 (226)
T ss_dssp SGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCT-TC
T ss_pred CHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccc-cC
Confidence 3456889999988888777653 124699999999999999999998642 12222211100 00
Q ss_pred ceEEEeecCchhHhhhhh------hhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeC
Q 006051 387 LTVTAVKDGGEWMLEAGA------LVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATN 460 (663)
Q Consensus 387 l~~~~~~~~~~~~~~~g~------l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN 460 (663)
.......... ...+.+++++|||++.+..+.+..|+..+++. +.++.+|+++|
T Consensus 82 --------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~-------------~~~~~~i~~~~ 140 (226)
T 2chg_A 82 --------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCN 140 (226)
T ss_dssp --------HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEES
T ss_pred --------hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhc-------------CCCCeEEEEeC
Confidence 0000000011 11246789999999999999999999999863 23567888888
Q ss_pred CCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHc
Q 006051 461 PKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKG 540 (663)
Q Consensus 461 ~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~ 540 (663)
... .+.+++.+||. .+.+..... +.+..++...-.
T Consensus 141 ~~~------------~~~~~l~~r~~-~i~~~~~~~--------------------------------~~~~~~l~~~~~ 175 (226)
T 2chg_A 141 YVS------------RIIEPIQSRCA-VFRFKPVPK--------------------------------EAMKKRLLEICE 175 (226)
T ss_dssp CGG------------GSCHHHHTTSE-EEECCCCCH--------------------------------HHHHHHHHHHHH
T ss_pred Chh------------hcCHHHHHhCc-eeecCCCCH--------------------------------HHHHHHHHHHHH
Confidence 752 34568999997 444433332 222222211111
Q ss_pred cCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 541 YFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 541 ~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
.....+++++.+.|... +++++|.+.++++.+...+ +.|+.+|+..|+.
T Consensus 176 ~~~~~~~~~~~~~l~~~------------~~g~~r~l~~~l~~~~~~~-----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 176 KEGVKITEDGLEALIYI------------SGGDFRKAINALQGAAAIG-----EVVDADTIYQITA 224 (226)
T ss_dssp HHTCCBCHHHHHHHHHH------------HTTCHHHHHHHHHHHHHTC-----SCBCHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHhcC-----ceecHHHHHHHhc
Confidence 11234777777766644 3467888888877654433 6899999998874
No 48
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.43 E-value=7.3e-13 Score=145.23 Aligned_cols=220 Identities=21% Similarity=0.171 Sum_probs=126.6
Q ss_pred ccccCchhHHHHHHHHHHh--CCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 313 CPQVFGLFTVKLAVALTLI--GGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~--~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
+.+|.|++.+|..+.-... ...... .....+.+.++||+||||||||+|+++++..+..+++...........
T Consensus 30 f~dv~G~~~~k~~l~~lv~~l~~~~~~--~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~--- 104 (499)
T 2dhr_A 30 FKDVAGAEEAKEELKEIVEFLKNPSRF--HEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF--- 104 (499)
T ss_dssp TTSSCSCHHHHHHHHHHHHHHHCGGGT--TTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSC---
T ss_pred HHHcCCcHHHHHHHHHHHHHhhchhhh--hhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhh---
Confidence 3467787777766543222 111111 112233345699999999999999999999988777664322111000
Q ss_pred EeecCchhHhhh-hhhhhc---cCCeeecccccccChh--------------hHHhHHHHHHhceeeeeccCceeecCCc
Q 006051 391 AVKDGGEWMLEA-GALVLA---DGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTR 452 (663)
Q Consensus 391 ~~~~~~~~~~~~-g~l~~a---~~gvl~iDEid~l~~~--------------~~~~L~~~me~~~i~i~k~g~~~~~~~~ 452 (663)
.+...... ..+..+ ..+++||||++.+... ..+.++..|+.+. .+..
T Consensus 105 ----~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-----------~~~~ 169 (499)
T 2dhr_A 105 ----VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTA 169 (499)
T ss_dssp ----TTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC-----------SSCC
T ss_pred ----hhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc-----------cCcc
Confidence 01111111 222223 2489999999987532 1233444444221 1345
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHH
Q 006051 453 TIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAM 530 (663)
Q Consensus 453 ~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~ 530 (663)
+.++|+||.+.. +.+++++ |||..+.+ +.|+.+.... |++.+....
T Consensus 170 viviAatn~p~~------------LD~aLlr~gRfdr~i~i-~~Pd~~~R~~----IL~~~~~~~--------------- 217 (499)
T 2dhr_A 170 IVVMAATNRPDI------------LDPALLRPGRFDRQIAI-DAPDVKGREQ----ILRIHARGK--------------- 217 (499)
T ss_dssp CEEEECCSCGGG------------SCTTTSSTTSSCCEEEC-CCCCHHHHHH----HHHHTTSSS---------------
T ss_pred EEEEEecCChhh------------cCcccccccccceEEec-CCCCHHHHHH----HHHHHHhcC---------------
Confidence 689999998733 4457887 89998887 4455433332 333332100
Q ss_pred HHHHHHHHHccCCCccCHHH-HHHHHHHHHHHHhcccCCCccccH-hHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 531 LRRYIYFVKGYFKPILTKEA-EKVISSYYQLQRRSATQNAARTTV-RMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 531 l~~~i~~~r~~~~p~ls~ea-~~~l~~~y~~~r~~~~~~~~~~t~-R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
.+++++ ...|.. .|++.. |.|+++++-|...|..+.+..|+.+|+..|+.-+
T Consensus 218 --------------~l~~dv~l~~lA~------------~t~G~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v 271 (499)
T 2dhr_A 218 --------------PLAEDVDLALLAK------------RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAADRV 271 (499)
T ss_dssp --------------CCCCSSTTHHHHT------------TSCSCCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHH
T ss_pred --------------CCChHHHHHHHHH------------hcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHH
Confidence 111111 111111 245544 9999999988888887777889999999998766
Q ss_pred Hh
Q 006051 609 ES 610 (663)
Q Consensus 609 ~~ 610 (663)
..
T Consensus 272 ~~ 273 (499)
T 2dhr_A 272 MM 273 (499)
T ss_dssp TT
T ss_pred hc
Confidence 43
No 49
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.43 E-value=2.2e-13 Score=141.10 Aligned_cols=166 Identities=20% Similarity=0.170 Sum_probs=99.0
Q ss_pred cccCchhHHHHHHHHHHhCCceeec-CCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.+|.|++.+|+.+.-.+........ ..+...+.+.++||+||||||||++|+++++.++.+++......... ..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~-----~~ 89 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT-----MW 89 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH-----HH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh-----hh
Confidence 3688888888777655432100000 00001234578999999999999999999999887776643221100 00
Q ss_pred ecCchhHhhhhhhhh---ccCCeeecccccccChh--------------hHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 393 KDGGEWMLEAGALVL---ADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 393 ~~~~~~~~~~g~l~~---a~~gvl~iDEid~l~~~--------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
.+..+. ...+.+.. ..++|+||||++.+... .+..|+..|+.-. -+.++.|
T Consensus 90 ~g~~~~-~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~-----------~~~~v~v 157 (301)
T 3cf0_A 90 FGESEA-NVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFI 157 (301)
T ss_dssp HTTCTT-HHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----------TTSSEEE
T ss_pred cCchHH-HHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----------CCCCEEE
Confidence 000000 01122222 24689999999987543 2456777776311 1356899
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhh
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILA 509 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~ 509 (663)
|+|||... .+.+++++ ||+..+.+ ..++.+....+.++.++
T Consensus 158 i~atn~~~------------~ld~al~r~gRf~~~i~i-~~p~~~~r~~il~~~l~ 200 (301)
T 3cf0_A 158 IGATNRPD------------IIDPAILRPGRLDQLIYI-PLPDEKSRVAILKANLR 200 (301)
T ss_dssp EEEESCGG------------GSCGGGGSTTSSCEEEEC-CCCCHHHHHHHHHHHHT
T ss_pred EEecCCcc------------ccChHHhcCCccceEEec-CCcCHHHHHHHHHHHHc
Confidence 99999873 34568888 99988877 44554444445555554
No 50
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.42 E-value=7.4e-14 Score=141.99 Aligned_cols=222 Identities=18% Similarity=0.114 Sum_probs=124.6
Q ss_pred cccCchhHHHHHHHHHHhCCceeec-CCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
.+|+|++.+|+.+.-.+.. ..... -.....+.+.++||+||||||||++|+++++....+++..........+.
T Consensus 11 ~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~---- 85 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFV---- 85 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCS----
T ss_pred HHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhc----
Confidence 4678888777776654321 00000 00001223467999999999999999999998887776654332211111
Q ss_pred ecCchhHhhhhhhhh---ccCCeeecccccccChhh---------------HHhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 393 KDGGEWMLEAGALVL---ADGGLCCIDEFDSMREHD---------------RATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 393 ~~~~~~~~~~g~l~~---a~~gvl~iDEid~l~~~~---------------~~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
+.+... ..+.+.. ...+|+||||++.+.... +..|+..|+.. ...+.++.
T Consensus 86 -~~~~~~-~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~----------~~~~~~v~ 153 (268)
T 2r62_A 86 -GLGASR-VRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF----------GSENAPVI 153 (268)
T ss_dssp -SSCSSS-SSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS----------SCSCSCCE
T ss_pred -chHHHH-HHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc----------ccCCCCEE
Confidence 000000 0111211 245899999999986542 22233333210 01234578
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHH
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLR 532 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~ 532 (663)
+|+|||.... +.+++++ ||+..+.+..++.++....+ ++.+.....
T Consensus 154 vi~ttn~~~~------------ld~~l~r~~Rf~~~i~i~~p~~~~r~~il-~~~~~~~~~------------------- 201 (268)
T 2r62_A 154 VLAATNRPEI------------LDPALMRPGRFDRQVLVDKPDFNGRVEIL-KVHIKGVKL------------------- 201 (268)
T ss_dssp EEECBSCCTT------------SCGGGGSSSSSCCCCBCCCCCTTTHHHHH-HHHTSSSCC-------------------
T ss_pred EEEecCCchh------------cCHhHcCCCCCCeEEEecCcCHHHHHHHH-HHHHhcCCC-------------------
Confidence 9999998743 4457888 99988888555544444443 333221110
Q ss_pred HHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 533 RYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 533 ~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
.+..+ .+.|.. . ....+.|.+.++++.|...|....+..|+.+|+..|+.-+
T Consensus 202 ----------~~~~~---~~~la~------~-----~~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 202 ----------ANDVN---LQEVAK------L-----TAGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp ----------CSSCC---TTTTTS------S-----SCSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred ----------CCccC---HHHHHH------H-----cCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 00000 000000 0 1123458999999999888887778899999998876543
No 51
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=4.7e-12 Score=133.71 Aligned_cols=209 Identities=16% Similarity=0.116 Sum_probs=125.6
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC------ceEEeCCCcccCC
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR------SVITTGLGSTSAG 386 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~------~~~~~~~~~~~~g 386 (663)
..+++|++.++..+...+..| ...|+||+||||||||++++++++.... .+....... ..+
T Consensus 36 ~~~i~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~-~~~ 102 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLKSA------------NLPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASD-ERG 102 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTTCT------------TCCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSS-CCC
T ss_pred HHHhhCCHHHHHHHHHHHhcC------------CCCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccc-ccc
Confidence 457899999999988888664 1146999999999999999999987532 232222111 001
Q ss_pred ceEEEeecC-chhHhh---------hhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 387 LTVTAVKDG-GEWMLE---------AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 387 l~~~~~~~~-~~~~~~---------~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
.. .+.+. ..+... .+....+..+|++|||++.++...++.|++.|++.. ..+.+|
T Consensus 103 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~-------------~~~~~i 167 (353)
T 1sxj_D 103 IS--IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS-------------GVTRFC 167 (353)
T ss_dssp HH--HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT-------------TTEEEE
T ss_pred hH--HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC-------------CCceEE
Confidence 00 00000 000000 000112355699999999999999999999999743 345677
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHH
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIY 536 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~ 536 (663)
.++|... .+.+++.+||. .+.+..... +.+..++.
T Consensus 168 l~~~~~~------------~l~~~l~sR~~-~i~~~~~~~--------------------------------~~~~~~l~ 202 (353)
T 1sxj_D 168 LICNYVT------------RIIDPLASQCS-KFRFKALDA--------------------------------SNAIDRLR 202 (353)
T ss_dssp EEESCGG------------GSCHHHHHHSE-EEECCCCCH--------------------------------HHHHHHHH
T ss_pred EEeCchh------------hCcchhhccCc-eEEeCCCCH--------------------------------HHHHHHHH
Confidence 7888642 36679999997 444433322 22222222
Q ss_pred HHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCC-ccChhhHHHHHH
Q 006051 537 FVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRN-EVTRLDAITAIL 606 (663)
Q Consensus 537 ~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~-~V~~~Dv~~Ai~ 606 (663)
..-..-...+++++.+.|.++. .+++|.+.++++.+...+.-.... .|+.+|+..++.
T Consensus 203 ~~~~~~~~~i~~~~l~~l~~~~------------~G~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 203 FISEQENVKCDDGVLERILDIS------------AGDLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHTTTCCCCHHHHHHHHHHT------------SSCHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHc------------CCCHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 1111113347777777776651 246888777777666555422222 688888877654
No 52
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.39 E-value=6.9e-13 Score=121.75 Aligned_cols=111 Identities=14% Similarity=0.224 Sum_probs=78.1
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC---CceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccCh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN---RSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMRE 423 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~---~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~ 423 (663)
+.||||+||||||||++|+++++.++ .+++ ..+...... ....|.+..+++|++||||++.+++
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------------~~~~~~~~~a~~g~l~ldei~~l~~ 90 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------------PQLNDFIALAQGGTLVLSHPEHLTR 90 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------------SCHHHHHHHHTTSCEEEECGGGSCH
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------------hhhhcHHHHcCCcEEEEcChHHCCH
Confidence 37899999999999999999999864 3444 333221111 1235667788999999999999999
Q ss_pred hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhh
Q 006051 424 HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIV 488 (663)
Q Consensus 424 ~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli 488 (663)
+.|..|+++|+.. +.++++|+|||..- ........+.+.|+.|+..+
T Consensus 91 ~~q~~Ll~~l~~~-------------~~~~~~I~~t~~~~-----~~~~~~~~~~~~L~~rl~~~ 137 (145)
T 3n70_A 91 EQQYHLVQLQSQE-------------HRPFRLIGIGDTSL-----VELAASNHIIAELYYCFAMT 137 (145)
T ss_dssp HHHHHHHHHHHSS-------------SCSSCEEEEESSCH-----HHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-------------CCCEEEEEECCcCH-----HHHHHcCCCCHHHHHHhcCC
Confidence 9999999999432 34568999999740 00111224556788887643
No 53
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.37 E-value=1.4e-11 Score=128.78 Aligned_cols=206 Identities=15% Similarity=0.076 Sum_probs=120.6
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEe
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAV 392 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~ 392 (663)
..++.|++.++..+.-.+..| +.+..+|+.||||||||++++++++..+..++...... .+ ...+
T Consensus 25 ~~~ivg~~~~~~~l~~~l~~~-----------~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~--~~--~~~i 89 (324)
T 3u61_B 25 IDECILPAFDKETFKSITSKG-----------KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD--CK--IDFV 89 (324)
T ss_dssp TTTSCCCHHHHHHHHHHHHTT-----------CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT--CC--HHHH
T ss_pred HHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc--cC--HHHH
Confidence 457889999998888877654 12245688888999999999999998877766544221 11 0000
Q ss_pred ecCchhHhh-hhhh-hhccCCeeecccccccC-hhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCC
Q 006051 393 KDGGEWMLE-AGAL-VLADGGLCCIDEFDSMR-EHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNL 469 (663)
Q Consensus 393 ~~~~~~~~~-~g~l-~~a~~gvl~iDEid~l~-~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~ 469 (663)
+ ..... .... ....++|++|||++.++ .+.++.|+..|+... .++.+|+++|+..
T Consensus 90 ~---~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~-------------~~~~iI~~~n~~~------ 147 (324)
T 3u61_B 90 R---GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYS-------------SNCSIIITANNID------ 147 (324)
T ss_dssp H---THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHG-------------GGCEEEEEESSGG------
T ss_pred H---HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCC-------------CCcEEEEEeCCcc------
Confidence 0 00000 0000 11256899999999999 999999999998642 3458899999862
Q ss_pred ccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCH-
Q 006051 470 SLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTK- 548 (663)
Q Consensus 470 ~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~- 548 (663)
.+.++|++||. ++.+..+..++... +...++. .++ ..++.. ...+++
T Consensus 148 ------~l~~~l~sR~~-~i~~~~~~~~e~~~-il~~~~~--------------------~l~---~~~~~~-~~~~~~~ 195 (324)
T 3u61_B 148 ------GIIKPLQSRCR-VITFGQPTDEDKIE-MMKQMIR--------------------RLT---EICKHE-GIAIADM 195 (324)
T ss_dssp ------GSCTTHHHHSE-EEECCCCCHHHHHH-HHHHHHH--------------------HHH---HHHHHH-TCCBSCH
T ss_pred ------ccCHHHHhhCc-EEEeCCCCHHHHHH-HHHHHHH--------------------HHH---HHHHHc-CCCCCcH
Confidence 45678999996 45553333333222 2222211 111 111111 235666
Q ss_pred HHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 549 EAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 549 ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
++.+.|..+ +.+++|.+.+.+..+. ....|+.+++..+.
T Consensus 196 ~~~~~l~~~------------~~gd~R~a~~~L~~~~------~~~~i~~~~v~~~~ 234 (324)
T 3u61_B 196 KVVAALVKK------------NFPDFRKTIGELDSYS------SKGVLDAGILSLVT 234 (324)
T ss_dssp HHHHHHHHH------------TCSCTTHHHHHHHHHG------GGTCBCC-------
T ss_pred HHHHHHHHh------------CCCCHHHHHHHHHHHh------ccCCCCHHHHHHHh
Confidence 777776654 3456777766665432 23457777776654
No 54
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.36 E-value=4.9e-12 Score=138.88 Aligned_cols=233 Identities=15% Similarity=0.126 Sum_probs=136.5
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc----------CCceEEeCCCc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLGS 382 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~----------~~~~~~~~~~~ 382 (663)
...|+|++...+.+.-.+..+ ...|+||+||||||||++++++++.. +..++....+
T Consensus 179 ld~iiGr~~~i~~l~~~l~r~------------~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~- 245 (468)
T 3pxg_A 179 LDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG- 245 (468)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCCccCcHHHHHHHHHHHhcc------------CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-
Confidence 346899998888877777542 23689999999999999999999875 3334433222
Q ss_pred ccCCceEEEeecCchhHhh----hhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 383 TSAGLTVTAVKDGGEWMLE----AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 383 ~~~gl~~~~~~~~~~~~~~----~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
... .|++... .+.+..+.++|+||| ...+.++.|..+|+.+. +.+|+|
T Consensus 246 -------~~~--~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g~---------------v~vI~a 297 (468)
T 3pxg_A 246 -------TKY--RGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARGE---------------LQCIGA 297 (468)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSSS---------------CEEEEE
T ss_pred -------ccc--cchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCCC---------------EEEEec
Confidence 001 1211111 112223467899999 44456666777776553 489999
Q ss_pred eCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFV 538 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 538 (663)
||+.. +.....+.++|.+||.. +.+ +.++.+....+..+++..... .....++.+.+...+.++
T Consensus 298 t~~~e-------~~~~~~~~~al~~Rf~~-i~v-~~p~~e~~~~iL~~~~~~~~~-------~~~~~i~~~al~~l~~~s 361 (468)
T 3pxg_A 298 TTLDE-------YRKYIEKDAALERRFQP-IQV-DQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKLS 361 (468)
T ss_dssp CCTTT-------THHHHTTCSHHHHSEEE-EEC-CCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHHH
T ss_pred CCHHH-------HHHHhhcCHHHHHhCcc-cee-CCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHH
Confidence 99862 11223567899999985 555 444444434444444433221 122347888888888888
Q ss_pred HccCCC-ccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 539 KGYFKP-ILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 539 r~~~~p-~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
.+++.- .+++.+.+++.......+.. ...+|.+++.|+..+.-...... ..+..+|...|..+.
T Consensus 362 ~~~~~~~~lp~~ai~ll~~a~~~~~~~--~~~~p~~i~~l~~~i~~l~~~~~----~~~~~~d~~~~~~l~ 426 (468)
T 3pxg_A 362 DRYISDRFLPDKAIDLIDEAGSKVRLR--SFTTPPNLKELEQKLDEVRKEKD----AAVQSQEFEKAASLR 426 (468)
T ss_dssp HHSSCCSCTTHHHHHHHHHHHHHHHHH--TTSCCSSTHHHHHHHHHHHHHHH----HHHHHCCSHHHHHHH
T ss_pred HHHhccCcCCcHHHHHHHHHHHHHHhc--cCCCchHHHHHHHHHHHHHHHHH----HHHhCcCHHHHHHHH
Confidence 766543 46778888887765444432 23578889998877664332211 234456666665554
No 55
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.33 E-value=3.8e-13 Score=123.19 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=79.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDR 426 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~ 426 (663)
+.||||+||||||||++|+++++.++ +++...+.... . ....|.+..+++|++||||++.++.+.+
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~-----------~--~~~~~~~~~a~~~~l~lDei~~l~~~~q 92 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYL-----------I--DMPMELLQKAEGGVLYVGDIAQYSRNIQ 92 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHH-----------H--HCHHHHHHHTTTSEEEEEECTTCCHHHH
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCC-----------h--HhhhhHHHhCCCCeEEEeChHHCCHHHH
Confidence 37899999999999999999998877 56554332211 0 1136777788999999999999999999
Q ss_pred HhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhhh
Q 006051 427 ATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 427 ~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
..|+++|+++. +.++.+|+|||.. ..+ ... +.+.|+.||..
T Consensus 93 ~~Ll~~l~~~~------------~~~~~iI~~tn~~~~~~-------~~~-~~~~L~~rl~~ 134 (143)
T 3co5_A 93 TGITFIIGKAE------------RCRVRVIASCSYAAGSD-------GIS-CEEKLAGLFSE 134 (143)
T ss_dssp HHHHHHHHHHT------------TTTCEEEEEEEECTTTC---------C-HHHHHHHHSSS
T ss_pred HHHHHHHHhCC------------CCCEEEEEecCCCHHHH-------HhC-ccHHHHHHhcC
Confidence 99999999863 4567899999975 211 111 44567777643
No 56
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=7.2e-12 Score=130.67 Aligned_cols=204 Identities=16% Similarity=0.178 Sum_probs=120.6
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC-----ceEEeCCCcccCC
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR-----SVITTGLGSTSAG 386 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~-----~~~~~~~~~~~~g 386 (663)
-+.+++|++.++..+.-.+..| ...|+||+||||||||++++++++.... .++...... ..+
T Consensus 23 ~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~-~~~ 89 (327)
T 1iqp_A 23 RLDDIVGQEHIVKRLKHYVKTG------------SMPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASD-ERG 89 (327)
T ss_dssp STTTCCSCHHHHHHHHHHHHHT------------CCCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTC-HHH
T ss_pred CHHHhhCCHHHHHHHHHHHHcC------------CCCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccc-cCc
Confidence 3457899999999888777654 1146999999999999999999986421 122211110 000
Q ss_pred ceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCC
Q 006051 387 LTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 387 l~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d 466 (663)
.. .++..-......+.+..+.+++++|||++.++.+.++.|+..|++. +..+.+|+++|...
T Consensus 90 ~~--~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~--- 151 (327)
T 1iqp_A 90 IN--VIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMF-------------SSNVRFILSCNYSS--- 151 (327)
T ss_dssp HH--TTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCGG---
T ss_pred hH--HHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCCcc---
Confidence 00 0000000000112222356789999999999999999999999874 23557888888642
Q ss_pred CCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCcc
Q 006051 467 PNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPIL 546 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~l 546 (663)
.+.+++.+||. .+.+... +.+.+..++...-......+
T Consensus 152 ---------~l~~~l~sr~~-~~~~~~l--------------------------------~~~~~~~~l~~~~~~~~~~~ 189 (327)
T 1iqp_A 152 ---------KIIEPIQSRCA-IFRFRPL--------------------------------RDEDIAKRLRYIAENEGLEL 189 (327)
T ss_dssp ---------GSCHHHHHTEE-EEECCCC--------------------------------CHHHHHHHHHHHHHTTTCEE
T ss_pred ---------ccCHHHHhhCc-EEEecCC--------------------------------CHHHHHHHHHHHHHhcCCCC
Confidence 35678999987 3444222 23333333322211223347
Q ss_pred CHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 547 TKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 547 s~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
++++.+.|..+ +.+++|.+.++++.+... ...++.+|+..++
T Consensus 190 ~~~~~~~l~~~------------~~g~~r~~~~~l~~~~~~-----~~~i~~~~v~~~~ 231 (327)
T 1iqp_A 190 TEEGLQAILYI------------AEGDMRRAINILQAAAAL-----DKKITDENVFMVA 231 (327)
T ss_dssp CHHHHHHHHHH------------HTTCHHHHHHHHHHHHTT-----CSEECHHHHHHHT
T ss_pred CHHHHHHHHHH------------CCCCHHHHHHHHHHHHhc-----CCCCCHHHHHHHH
Confidence 77777776654 234677777776644321 2356666665443
No 57
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.30 E-value=1e-12 Score=150.91 Aligned_cols=158 Identities=20% Similarity=0.183 Sum_probs=97.3
Q ss_pred ccCchhHHHHHHHHHHhCCceeec-CCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEee
Q 006051 315 QVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVK 393 (663)
Q Consensus 315 ~i~G~~~~K~aill~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~ 393 (663)
+|.|++.+|+.+.-.+........ ..+...+.+.++||+||||||||++|+++|..+..+++.......... ++
T Consensus 478 diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~----~v- 552 (806)
T 3cf2_A 478 DIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM----WF- 552 (806)
T ss_dssp TCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTT----TC-
T ss_pred HhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhcc----cc-
Confidence 467999999998877665433221 123345667899999999999999999999999998887532211110 00
Q ss_pred cCchhHhhhhhhhh---ccCCeeecccccccChh--------------hHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 394 DGGEWMLEAGALVL---ADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 394 ~~~~~~~~~g~l~~---a~~gvl~iDEid~l~~~--------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
+..+..+ ...+.. +.++|+||||+|.+-.. ..+.|+..|+.-. -..++.||
T Consensus 553 Gese~~v-r~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~-----------~~~~V~vi 620 (806)
T 3cf2_A 553 GESEANV-REIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNVFII 620 (806)
T ss_dssp SSCHHHH-HHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSC-----------SSSSEEEE
T ss_pred chHHHHH-HHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCC-----------CCCCEEEE
Confidence 0111111 111222 35789999999997432 2344566665311 13467899
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHH
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAV 502 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~ 502 (663)
||||.+.. |.+|+++ |||.++.+ +.|+.+.+..
T Consensus 621 ~aTN~p~~------------lD~AllRpgRfd~~i~v-~lPd~~~R~~ 655 (806)
T 3cf2_A 621 GATNRPDI------------IDPAILRPGRLDQLIYI-PLPDEKSRVA 655 (806)
T ss_dssp CC-CCSSS------------SCHHHHSTTTSCCEEEC------CHHHH
T ss_pred EeCCCchh------------CCHhHcCCCcceEEEEE-CCcCHHHHHH
Confidence 99999854 4459999 99999988 4455544433
No 58
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.29 E-value=6.4e-12 Score=130.59 Aligned_cols=137 Identities=21% Similarity=0.188 Sum_probs=87.7
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc-C----CceEEeCCCcccCCc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS-N----RSVITTGLGSTSAGL 387 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~-~----~~~~~~~~~~~~~gl 387 (663)
..+++|++.++..+.-.+..| ...|+||+||||||||++++++++.. . ..++....... .+.
T Consensus 16 ~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~-~~~ 82 (319)
T 2chq_A 16 LDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDE-RGI 82 (319)
T ss_dssp GGGSCSCHHHHHHHHTTTTTT------------CCCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTST-TCT
T ss_pred HHHHhCCHHHHHHHHHHHhCC------------CCCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccc-cCh
Confidence 346899999988877666443 12469999999999999999999864 1 12332221110 010
Q ss_pred eEEEeecCchhHhh---hhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCC
Q 006051 388 TVTAVKDGGEWMLE---AGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGH 464 (663)
Q Consensus 388 ~~~~~~~~~~~~~~---~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~ 464 (663)
. ........ ...+..+.++|++|||++.++.+.++.|+..|++. +.++.+|+++|...
T Consensus 83 ~-----~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~i~~~~~~~- 143 (319)
T 2chq_A 83 D-----VVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMY-------------SKSCRFILSCNYVS- 143 (319)
T ss_dssp T-----TSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSS-------------SSSEEEEEEESCGG-
T ss_pred H-----HHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhc-------------CCCCeEEEEeCChh-
Confidence 0 00110000 01111245789999999999998888888888752 35678888888752
Q ss_pred CCCCCccccccCCChhhhhhhhhhhhhcC
Q 006051 465 YDPNLSLSVNTTLSGPLLSRFDIVLVLLD 493 (663)
Q Consensus 465 ~d~~~~~~~~~~l~~aLl~RFdli~~l~d 493 (663)
.+.+++.+||. .+.+..
T Consensus 144 -----------~l~~~l~sr~~-~i~~~~ 160 (319)
T 2chq_A 144 -----------RIIEPIQSRCA-VFRFKP 160 (319)
T ss_dssp -----------GSCHHHHTTCE-EEECCC
T ss_pred -----------hcchHHHhhCe-EEEecC
Confidence 45678999997 454533
No 59
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.28 E-value=1.8e-12 Score=133.52 Aligned_cols=144 Identities=17% Similarity=0.111 Sum_probs=83.2
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhh-------hccCCeeecc
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-------LADGGLCCID 416 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~-------~a~~gvl~iD 416 (663)
.+++.++||+||||||||++|+++|+.++.+++....+....... +.....+ ...+. ...++|+|||
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~-----g~~~~~i-~~~f~~a~~~~~~~~~~vl~iD 106 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNA-----GEPAKLI-RQRYREAAEIIRKGNMCCLFIN 106 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC--------HHHHHH-HHHHHHHHHHHTTSSCCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccC-----chhHHHH-HHHHHHHHHHHhcCCCeEEEEe
Confidence 455678999999999999999999999988887754332211111 0000000 11222 2267999999
Q ss_pred cccccCh-------------hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh
Q 006051 417 EFDSMRE-------------HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS 483 (663)
Q Consensus 417 Eid~l~~-------------~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~ 483 (663)
|+|++.+ ..+..|++.|+..............-..++.||+|||... .++++|++
T Consensus 107 EiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~------------~ld~al~R 174 (293)
T 3t15_A 107 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS------------TLYAPLIR 174 (293)
T ss_dssp CCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC------------C--CHHHH
T ss_pred chhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc------------cCCHHHhC
Confidence 9998754 2347788888854321111111112245679999999874 34558885
Q ss_pred --hhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 484 --RFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 484 --RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
|||.++.+ |+.+....|.++++
T Consensus 175 ~~R~d~~i~~---P~~~~r~~Il~~~~ 198 (293)
T 3t15_A 175 DGRMEKFYWA---PTREDRIGVCTGIF 198 (293)
T ss_dssp HHHEEEEEEC---CCHHHHHHHHHHHH
T ss_pred CCCCceeEeC---cCHHHHHHHHHHhc
Confidence 99987753 45555555554444
No 60
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.27 E-value=8.4e-12 Score=125.72 Aligned_cols=182 Identities=22% Similarity=0.198 Sum_probs=104.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhh-hhc---cCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLA---DGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l-~~a---~~gvl~iDEid~l~~ 423 (663)
.+++|+||||||||+|+++++.....+++......... . ..+......+.+ ..+ ..+++++||++.+..
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~------~-~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~ 122 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE------M-FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 122 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH------S-CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHH------H-HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhc
Confidence 45999999999999999999998876655432110000 0 001111111112 122 347999999987642
Q ss_pred h--------------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhh
Q 006051 424 H--------------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDI 487 (663)
Q Consensus 424 ~--------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdl 487 (663)
. ..+.++..|+.+. ....+.++|++|.+.. +.+++++ |||.
T Consensus 123 ~~~~~~~~~~~~~~~~~~~ll~~l~g~~-----------~~~~~i~~a~t~~p~~------------ld~~l~r~~rf~~ 179 (254)
T 1ixz_A 123 KRGSGVGGGNDEREQTLNQLLVEMDGFE-----------KDTAIVVMAATNRPDI------------LDPALLRPGRFDR 179 (254)
T ss_dssp ---------CHHHHHHHHHHHHHHHTCC-----------TTCCEEEEEEESCGGG------------SCGGGGSTTSSCE
T ss_pred ccCccccccchHHHHHHHHHHHHHhCCC-----------CCCCEEEEEccCCchh------------CCHHHcCCCcCCe
Confidence 1 1123333443221 1234578899997633 4558887 8999
Q ss_pred hhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHH-HHHHHHHHHHHHhccc
Q 006051 488 VLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEA-EKVISSYYQLQRRSAT 566 (663)
Q Consensus 488 i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea-~~~l~~~y~~~r~~~~ 566 (663)
.+.+ +.++.+....+.+...+.. .+++++ ...|..
T Consensus 180 ~i~i-~~p~~~~r~~il~~~~~~~---------------------------------~~~~~~~~~~la~---------- 215 (254)
T 1ixz_A 180 QIAI-DAPDVKGREQILRIHARGK---------------------------------PLAEDVDLALLAK---------- 215 (254)
T ss_dssp EEEC-CSCCHHHHHHHHHHHHTTS---------------------------------CBCTTCCHHHHHH----------
T ss_pred EEee-CCcCHHHHHHHHHHHHcCC---------------------------------CCCcccCHHHHHH----------
Confidence 8887 4444443333322221100 111111 111211
Q ss_pred CCCcc-ccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 567 QNAAR-TTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 567 ~~~~~-~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
.++ .+.|.|+++++-|...|..+.+..|+.+|+.+|+
T Consensus 216 --~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 216 --RTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp --TCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred --HcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 122 3568999999998888887777889999999875
No 61
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.27 E-value=9.1e-11 Score=116.11 Aligned_cols=209 Identities=19% Similarity=0.134 Sum_probs=122.8
Q ss_pred cccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcc--------
Q 006051 312 ICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGST-------- 383 (663)
Q Consensus 312 i~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~-------- 383 (663)
...+++|++..+..+...+..+ +.+..++|+||||+|||++++.+++..............
T Consensus 21 ~~~~~~g~~~~~~~l~~~l~~~-----------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (250)
T 1njg_A 21 TFADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREI 89 (250)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHT-----------CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHH
T ss_pred cHHHHhCcHHHHHHHHHHHHcC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 3457899999988888777654 112468999999999999999999865332110000000
Q ss_pred --cCCceEEEeecCc-hhHhhhhhhh--------hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCc
Q 006051 384 --SAGLTVTAVKDGG-EWMLEAGALV--------LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTR 452 (663)
Q Consensus 384 --~~gl~~~~~~~~~-~~~~~~g~l~--------~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~ 452 (663)
............. ........+. ...+.+++|||++.++.+.++.|+..+++. +..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~-------------~~~ 156 (250)
T 1njg_A 90 EQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEH 156 (250)
T ss_dssp HTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSC-------------CTT
T ss_pred hccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcC-------------CCc
Confidence 0000000111110 1100011111 123579999999999999999999988752 345
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHH
Q 006051 453 TIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLR 532 (663)
Q Consensus 453 ~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~ 532 (663)
+.+|+++|... .+.+++++|+. .+.+.. ++.+.+.
T Consensus 157 ~~~i~~t~~~~------------~~~~~l~~r~~-~i~l~~--------------------------------l~~~e~~ 191 (250)
T 1njg_A 157 VKFLLATTDPQ------------KLPVTILSRCL-QFHLKA--------------------------------LDVEQIR 191 (250)
T ss_dssp EEEEEEESCGG------------GSCHHHHTTSE-EEECCC--------------------------------CCHHHHH
T ss_pred eEEEEEeCChH------------hCCHHHHHHhh-hccCCC--------------------------------CCHHHHH
Confidence 67888888642 34567888862 333322 2333333
Q ss_pred HHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 533 RYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 533 ~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
.++...-......+++++.+.|.++ ..+++|.+..+++.+.+. ....|+.+|+..|+
T Consensus 192 ~~l~~~~~~~~~~~~~~~~~~l~~~------------~~G~~~~~~~~~~~~~~~----~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 192 HQLEHILNEEHIAHEPRALQLLARA------------AEGSLRDALSLTDQAIAS----GDGQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHTTCCBCHHHHHHHHHH------------HTTCHHHHHHHHHHHHTT----TTSSBCHHHHHHHS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHH------------cCCCHHHHHHHHHHHHhc----cCceecHHHHHHHh
Confidence 3332111112345777777666655 234689998888765332 34589999998875
No 62
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.26 E-value=8e-11 Score=125.61 Aligned_cols=235 Identities=17% Similarity=0.099 Sum_probs=135.2
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc---------CCceEEeCCCcc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS---------NRSVITTGLGST 383 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~---------~~~~~~~~~~~~ 383 (663)
.+.++|.+.....+.-.+-.... .....+++|+||||||||++++.+++.. +..++.......
T Consensus 18 p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 18 PDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp CSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 35689999888887766632100 1223689999999999999999999876 444443332211
Q ss_pred cCC--ceEE---E----eecCchhHhh-hhhh--hhccC---CeeecccccccChh--hHHhHHHHHHhceeeeeccCce
Q 006051 384 SAG--LTVT---A----VKDGGEWMLE-AGAL--VLADG---GLCCIDEFDSMREH--DRATIHEAMEQQTISVAKAGLV 446 (663)
Q Consensus 384 ~~g--l~~~---~----~~~~~~~~~~-~g~l--~~a~~---gvl~iDEid~l~~~--~~~~L~~~me~~~i~i~k~g~~ 446 (663)
... +... . ....+..... ...+ .+... .+++|||++.+... .+..|...++.....
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~------- 162 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL------- 162 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-------
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc-------
Confidence 000 0000 0 0000000000 0111 11122 39999999999876 667777766532110
Q ss_pred eecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh-hhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCC
Q 006051 447 TTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI-VLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDI 525 (663)
Q Consensus 447 ~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl-i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~ 525 (663)
..+.++.+|+++|.... ...+.+++.+||.. .+.+..+..++....+..++ .
T Consensus 163 -~~~~~~~~I~~t~~~~~---------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~-~---------------- 215 (387)
T 2v1u_A 163 -GDRVWVSLVGITNSLGF---------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRA-E---------------- 215 (387)
T ss_dssp ------CEEEEECSCSTT---------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHH-H----------------
T ss_pred -CCCceEEEEEEECCCch---------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHH-H----------------
Confidence 00346689999997521 01456789999975 55553333222222222111 1
Q ss_pred CCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 526 WPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 526 ~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
.+ .....+++++.+.+.++.. ..++++|.+..+++.+...|....+..|+.+|+..|+
T Consensus 216 -----------~~--~~~~~~~~~~~~~l~~~~~---------~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~ 273 (387)
T 2v1u_A 216 -----------EA--FNPGVLDPDVVPLCAALAA---------REHGDARRALDLLRVAGEIAERRREERVRREHVYSAR 273 (387)
T ss_dssp -----------HH--BCTTTBCSSHHHHHHHHHH---------SSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHH
T ss_pred -----------hh--ccCCCCCHHHHHHHHHHHH---------HhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Confidence 00 1123577777777776632 1246799999999999888887778899999999998
Q ss_pred HHHHhh
Q 006051 606 LCIESS 611 (663)
Q Consensus 606 ~l~~~s 611 (663)
.-...+
T Consensus 274 ~~~~~~ 279 (387)
T 2v1u_A 274 AEIERD 279 (387)
T ss_dssp HHHHHH
T ss_pred HHHhhc
Confidence 766443
No 63
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.25 E-value=1.2e-10 Score=115.44 Aligned_cols=180 Identities=15% Similarity=0.150 Sum_probs=111.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC---ceEEeCCCcccCCceEEEeecCchhHhhhhhh-hhccCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR---SVITTGLGSTSAGLTVTAVKDGGEWMLEAGAL-VLADGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~---~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l-~~a~~gvl~iDEid~l~~ 423 (663)
.+++|+||||||||++++.+++.... .++........ ... ...+ .....++++|||++.+..
T Consensus 53 ~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~vliiDe~~~~~~ 118 (242)
T 3bos_A 53 QAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA---------SIS-----TALLEGLEQFDLICIDDVDAVAG 118 (242)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG---------GSC-----GGGGTTGGGSSEEEEETGGGGTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH---------HHH-----HHHHHhccCCCEEEEeccccccC
Confidence 68999999999999999999986542 22221111100 000 0001 124578999999999987
Q ss_pred hh--HHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC-CCCCCCCccccccCCChhhhhhhh--hhhhhcCCCChh
Q 006051 424 HD--RATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK-GHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTKNPE 498 (663)
Q Consensus 424 ~~--~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~-g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~~~~ 498 (663)
.. +..++..++...- .....+|.++|.. ..+. .+.+++.+||. .++.+..+..++
T Consensus 119 ~~~~~~~l~~~l~~~~~-----------~~~~~ii~~~~~~~~~~~---------~~~~~l~~r~~~~~~i~l~~~~~~~ 178 (242)
T 3bos_A 119 HPLWEEAIFDLYNRVAE-----------QKRGSLIVSASASPMEAG---------FVLPDLVSRMHWGLTYQLQPMMDDE 178 (242)
T ss_dssp CHHHHHHHHHHHHHHHH-----------HCSCEEEEEESSCTTTTT---------CCCHHHHHHHHHSEEEECCCCCGGG
T ss_pred CHHHHHHHHHHHHHHHH-----------cCCCeEEEEcCCCHHHHH---------HhhhhhhhHhhcCceEEeCCCCHHH
Confidence 66 7788888765321 1112355666643 2221 23368999996 666664444434
Q ss_pred HHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHH
Q 006051 499 WDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLE 578 (663)
Q Consensus 499 ~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le 578 (663)
....+.. ++. .....+++++.+.|..+ ++.++|.+.
T Consensus 179 ~~~~l~~----------------------------~~~----~~~~~~~~~~~~~l~~~------------~~g~~r~l~ 214 (242)
T 3bos_A 179 KLAALQR----------------------------RAA----MRGLQLPEDVGRFLLNR------------MARDLRTLF 214 (242)
T ss_dssp HHHHHHH----------------------------HHH----HTTCCCCHHHHHHHHHH------------TTTCHHHHH
T ss_pred HHHHHHH----------------------------HHH----HcCCCCCHHHHHHHHHH------------ccCCHHHHH
Confidence 3332221 111 11235788887777765 356799999
Q ss_pred HHHHHHHHHHhccCCCccChhhHHHHHH
Q 006051 579 SLIRLAQAHARLMFRNEVTRLDAITAIL 606 (663)
Q Consensus 579 ~lirla~a~A~l~~~~~V~~~Dv~~Ai~ 606 (663)
.+++.+.+.|.... ..|+.+|+..|+.
T Consensus 215 ~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 215 DVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 99998888875554 5699999998864
No 64
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.24 E-value=1.1e-11 Score=126.58 Aligned_cols=185 Identities=21% Similarity=0.202 Sum_probs=104.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhh-h---ccCCeeecccccccCh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-L---ADGGLCCIDEFDSMRE 423 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~-~---a~~gvl~iDEid~l~~ 423 (663)
.+++|+||||||||+|+++++.....+++......... ...+......+.+. . ...+++++||++.+..
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~-------~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~ 146 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVE-------MFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 146 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHH-------STTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHC
T ss_pred CeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHH-------HHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhc
Confidence 45999999999999999999998876655432110000 00011111111111 1 2357999999987632
Q ss_pred h-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhh
Q 006051 424 H-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLV 490 (663)
Q Consensus 424 ~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~ 490 (663)
. ....+.+.+.+- .|.. ....+.++|++|.+.. +.+++++ ||+..+.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~ll~~l------sgg~--~~~~~i~~a~t~~p~~------------ld~~l~r~~rf~~~i~ 206 (278)
T 1iy2_A 147 KRGSGVGGGNDEREQTLNQLLVEM------DGFE--KDTAIVVMAATNRPDI------------LDPALLRPGRFDRQIA 206 (278)
T ss_dssp C--------CHHHHHHHHHHHHHH------TTCC--TTCCEEEEEEESCTTS------------SCHHHHSTTSSCCEEE
T ss_pred ccccccCCcchHHHHHHHHHHHHH------hCCC--CCCCEEEEEecCCchh------------CCHhHcCCCcCCeEEE
Confidence 1 122233332210 0111 1234578899998733 4568887 8999888
Q ss_pred hcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHH-HHHHHHHHHHHHhcccCCC
Q 006051 491 LLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEA-EKVISSYYQLQRRSATQNA 569 (663)
Q Consensus 491 l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea-~~~l~~~y~~~r~~~~~~~ 569 (663)
+. .++.+....+.++.++. ..+++++ ...+.. .
T Consensus 207 i~-~p~~~~r~~il~~~~~~---------------------------------~~~~~~~~~~~la~------------~ 240 (278)
T 1iy2_A 207 ID-APDVKGREQILRIHARG---------------------------------KPLAEDVDLALLAK------------R 240 (278)
T ss_dssp CC-CCCHHHHHHHHHHHHTT---------------------------------SCBCTTCCHHHHHH------------T
T ss_pred eC-CcCHHHHHHHHHHHHcc---------------------------------CCCCcccCHHHHHH------------H
Confidence 74 44443333332222210 0112111 111211 1
Q ss_pred ccc-cHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 570 ART-TVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 570 ~~~-t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
|+. +.|.|+++++.|...|..+.+..|+.+|+.+|+
T Consensus 241 ~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 241 TPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 333 458999999998888887777889999999875
No 65
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.24 E-value=2.1e-11 Score=124.20 Aligned_cols=162 Identities=19% Similarity=0.208 Sum_probs=92.7
Q ss_pred cccCchhHHHHHHHHHHhCC---ceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEE
Q 006051 314 PQVFGLFTVKLAVALTLIGG---VQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVT 390 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g---~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~ 390 (663)
.+|.|.+.+|+.+...+... ......-+ +..+.+++|+||||||||+|+++++...+.+++.........
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~--l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~----- 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALG--LVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN----- 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTT--CCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS-----
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcC--CCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh-----
Confidence 36888888888776544321 11111112 233345999999999999999999998877665543211100
Q ss_pred EeecCchhHhhhhhhh----hccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEE
Q 006051 391 AVKDGGEWMLEAGALV----LADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTII 455 (663)
Q Consensus 391 ~~~~~~~~~~~~g~l~----~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~i 455 (663)
...++.....+.+. .....++++||++.+... ..+.++..|+.+. -...+.+
T Consensus 83 --~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-----------~~~~~i~ 149 (274)
T 2x8a_A 83 --MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-----------ARQQVFI 149 (274)
T ss_dssp --STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC-----------STTCEEE
T ss_pred --hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc-----------ccCCEEE
Confidence 00111111122222 124679999999986421 1223333443321 1234578
Q ss_pred EEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHHHHh
Q 006051 456 FGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSSHIL 508 (663)
Q Consensus 456 iaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~~il 508 (663)
+|++|.+.. +.+++++ |||..+.+ +.|+.+....|.+.++
T Consensus 150 ia~tn~p~~------------LD~al~r~gRfd~~i~~-~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 150 MAATNRPDI------------IDPAILRPGRLDKTLFV-GLPPPADRLAILKTIT 191 (274)
T ss_dssp EEEESCGGG------------SCHHHHSTTSSCEEEEC-CSCCHHHHHHHHHHHT
T ss_pred EeecCChhh------------CCHhhcCcccCCeEEEe-CCcCHHHHHHHHHHHH
Confidence 899998743 4568998 99999987 6666655555544443
No 66
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.22 E-value=3e-11 Score=127.16 Aligned_cols=141 Identities=21% Similarity=0.266 Sum_probs=89.6
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCc-----eEEeCCCcccCCc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRS-----VITTGLGSTSAGL 387 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~-----~~~~~~~~~~~gl 387 (663)
..+++|++.++..+...+-.| ...|+||+||||||||++++++++..... +...... ...+.
T Consensus 24 ~~~~~g~~~~~~~L~~~i~~g------------~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~-~~~~~ 90 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVDEG------------KLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNAS-DDRGI 90 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTT-SCCSH
T ss_pred HHHhcCcHHHHHHHHHHHhcC------------CCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCc-ccccH
Confidence 446889999999888888765 11469999999999999999999864321 2221111 00010
Q ss_pred eEEEeecC-chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCC
Q 006051 388 TVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 388 ~~~~~~~~-~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d 466 (663)
. .+++. +.+ ...+....+...|++|||++.++.+.+++|+..||+. +..+.++.++|..
T Consensus 91 ~--~ir~~i~~~-~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~n~~---- 150 (340)
T 1sxj_C 91 D--VVRNQIKDF-ASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERY-------------TKNTRFCVLANYA---- 150 (340)
T ss_dssp H--HHHTHHHHH-HHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHT-------------TTTEEEEEEESCG----
T ss_pred H--HHHHHHHHH-HhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcC-------------CCCeEEEEEecCc----
Confidence 0 00000 000 0001111234679999999999999999999999874 2345677888864
Q ss_pred CCCccccccCCChhhhhhhhhhhhhcCCC
Q 006051 467 PNLSLSVNTTLSGPLLSRFDIVLVLLDTK 495 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~RFdli~~l~d~~ 495 (663)
..+.+++.+|+. .+.+...+
T Consensus 151 --------~~i~~~i~sR~~-~~~~~~l~ 170 (340)
T 1sxj_C 151 --------HKLTPALLSQCT-RFRFQPLP 170 (340)
T ss_dssp --------GGSCHHHHTTSE-EEECCCCC
T ss_pred --------cccchhHHhhce-eEeccCCC
Confidence 246679999986 44453333
No 67
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.22 E-value=4.9e-12 Score=145.23 Aligned_cols=160 Identities=19% Similarity=0.171 Sum_probs=98.1
Q ss_pred ccccCchhHHHHHH----HHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCce
Q 006051 313 CPQVFGLFTVKLAV----ALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLT 388 (663)
Q Consensus 313 ~p~i~G~~~~K~ai----ll~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~ 388 (663)
+.+|.|++.+|+.| .+.|... ....+...+.+.+|||+||||||||+|||++|+.++.+++...........
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p---~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~- 278 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHP---ALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL- 278 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCC---GGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSC-
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCH---HHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhccc-
Confidence 34788988655544 4444332 122334456778999999999999999999999998888765322111000
Q ss_pred EEEeecCchhHhhhhhhhh---ccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEE
Q 006051 389 VTAVKDGGEWMLEAGALVL---ADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTI 454 (663)
Q Consensus 389 ~~~~~~~~~~~~~~g~l~~---a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ 454 (663)
.+.++..+ ...+.. ..++|+||||+|.+.+. ..+.|+..|+.-. -..++.
T Consensus 279 ----~gese~~l-r~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~-----------~~~~V~ 342 (806)
T 3cf2_A 279 ----AGESESNL-RKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVI 342 (806)
T ss_dssp ----TTHHHHHH-HHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCC-----------GGGCEE
T ss_pred ----chHHHHHH-HHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhccc-----------ccCCEE
Confidence 00011111 112222 34789999999998532 2234555555321 134678
Q ss_pred EEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHHHHHH
Q 006051 455 IFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDAVVSS 505 (663)
Q Consensus 455 iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~~i~~ 505 (663)
||||||.... ++++|++ |||..+.+ ..|+.+.+..|.+
T Consensus 343 VIaaTN~~d~------------LD~ALrR~GRFd~~I~i-~~Pd~~~R~~IL~ 382 (806)
T 3cf2_A 343 VMAATNRPNS------------IDPALRRFGRFDREVDI-GIPDATGRLEILQ 382 (806)
T ss_dssp EEEECSSTTT------------SCTTTTSTTSSCEEEEC-CCCCHHHHHHHHH
T ss_pred EEEecCChhh------------cCHHHhCCcccceEEec-CCCCHHHHHHHHH
Confidence 9999998754 4458888 99999988 5555555444433
No 68
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.21 E-value=7.8e-12 Score=127.34 Aligned_cols=174 Identities=14% Similarity=0.154 Sum_probs=99.6
Q ss_pred cccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhh-hhhh---hhccCCeeeccccccc
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLE-AGAL---VLADGGLCCIDEFDSM 421 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~-~g~l---~~a~~gvl~iDEid~l 421 (663)
...++||+||||||||++|+++++..+.+++.........|... +..... ...+ ..+.++++||||++.+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l 136 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSE------TAKCQAMKKIFDDAYKSQLSCVVVDDIERL 136 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCH------HHHHHHHHHHHHHHHTSSEEEEEECCHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCch------HHHHHHHHHHHHHHHhcCCcEEEEEChhhh
Confidence 34789999999999999999999988877766533221111100 000000 1111 1245789999999998
Q ss_pred ------ChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCCh-hhhhhhhhhhhhcCC
Q 006051 422 ------REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSG-PLLSRFDIVLVLLDT 494 (663)
Q Consensus 422 ------~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~-aLl~RFdli~~l~d~ 494 (663)
++..+..+++++.... +.....+.++.+|+|||.... +.+ .+.+||+..+.+++.
T Consensus 137 ~~~~~~~~~~~~~~l~~L~~~~------~~~~~~~~~~~ii~ttn~~~~------------l~~~~l~~rf~~~i~~p~l 198 (272)
T 1d2n_A 137 LDYVPIGPRFSNLVLQALLVLL------KKAPPQGRKLLIIGTTSRKDV------------LQEMEMLNAFSTTIHVPNI 198 (272)
T ss_dssp TTCBTTTTBCCHHHHHHHHHHT------TCCCSTTCEEEEEEEESCHHH------------HHHTTCTTTSSEEEECCCE
T ss_pred hccCCCChhHHHHHHHHHHHHh------cCccCCCCCEEEEEecCChhh------------cchhhhhcccceEEcCCCc
Confidence 4444455555554311 001112456789999998521 112 467899887766433
Q ss_pred CChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccH
Q 006051 495 KNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTV 574 (663)
Q Consensus 495 ~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~ 574 (663)
... . .+..++... ..+++++...|.+... +.+|++++
T Consensus 199 ~~r---~----------------------------~i~~i~~~~-----~~~~~~~~~~l~~~~~-------g~~~~g~i 235 (272)
T 1d2n_A 199 ATG---E----------------------------QLLEALELL-----GNFKDKERTTIAQQVK-------GKKVWIGI 235 (272)
T ss_dssp EEH---H----------------------------HHHHHHHHH-----TCSCHHHHHHHHHHHT-------TSEEEECH
T ss_pred cHH---H----------------------------HHHHHHHhc-----CCCCHHHHHHHHHHhc-------CCCccccH
Confidence 221 1 122222211 1346666555554321 12588899
Q ss_pred hHHHHHHHHHHH
Q 006051 575 RMLESLIRLAQA 586 (663)
Q Consensus 575 R~Le~lirla~a 586 (663)
|.+.++++.+..
T Consensus 236 r~l~~~l~~a~~ 247 (272)
T 1d2n_A 236 KKLLMLIEMSLQ 247 (272)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHhh
Confidence 999999887643
No 69
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.19 E-value=2e-10 Score=133.92 Aligned_cols=209 Identities=16% Similarity=0.145 Sum_probs=120.6
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc----------CCceEEeCCCc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLGS 382 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~----------~~~~~~~~~~~ 382 (663)
...|+|++..++.+.-.|..+ ...|+||+||||||||++|+++++.. ...++....+.
T Consensus 179 ld~iiG~~~~i~~l~~~l~~~------------~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~g~ 246 (758)
T 3pxi_A 179 LDPVIGRSKEIQRVIEVLSRR------------TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMGT 246 (758)
T ss_dssp SCCCCCCHHHHHHHHHHHHCS------------SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC----
T ss_pred CCCccCchHHHHHHHHHHhCC------------CCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecccc
Confidence 446899999888888777542 23689999999999999999999875 33333322210
Q ss_pred ccCCceEEEeecCchhHh----hhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEe
Q 006051 383 TSAGLTVTAVKDGGEWML----EAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGA 458 (663)
Q Consensus 383 ~~~gl~~~~~~~~~~~~~----~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaa 458 (663)
..+ |++.. ..+.+..+.++|+||| ...+.++.|..+|+.+. +.+|+|
T Consensus 247 --------~~~--G~~e~~l~~~~~~~~~~~~~iLfiD----~~~~~~~~L~~~l~~~~---------------v~~I~a 297 (758)
T 3pxi_A 247 --------KYR--GEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARGE---------------LQCIGA 297 (758)
T ss_dssp ----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSSS---------------CEEEEE
T ss_pred --------ccc--chHHHHHHHHHHHHHhcCCEEEEEc----CchhHHHHHHHHHhcCC---------------EEEEeC
Confidence 011 11111 1222233568999999 44456666777776554 489999
Q ss_pred eCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 006051 459 TNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFV 538 (663)
Q Consensus 459 tN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 538 (663)
||+.. +.....+.++|.+||.. +.+ +.++.+....+..++...... .....++.+.+.....++
T Consensus 298 t~~~~-------~~~~~~~d~al~rRf~~-i~v-~~p~~~~~~~il~~~~~~~~~-------~~~~~i~~~al~~~~~~s 361 (758)
T 3pxi_A 298 TTLDE-------YRKYIEKDAALERRFQP-IQV-DQPSVDESIQILQGLRDRYEA-------HHRVSITDDAIEAAVKLS 361 (758)
T ss_dssp CCTTT-------THHHHTTCSHHHHSEEE-EEC-CCCCHHHHHHHHHHTTTTSGG-------GSSCSCCHHHHHHHHHHH
T ss_pred CChHH-------HHHHhhccHHHHhhCcE-EEe-CCCCHHHHHHHHHHHHHHHHH-------hcCCCCCHHHHHHHHHHh
Confidence 99862 11223567899999964 656 444444444444444433221 122347888898888888
Q ss_pred HccCCCc-cCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHH
Q 006051 539 KGYFKPI-LTKEAEKVISSYYQLQRRSATQNAARTTVRMLESL 580 (663)
Q Consensus 539 r~~~~p~-ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~l 580 (663)
.+++... +++.+.+++.......+... ..+|..++.++.-
T Consensus 362 ~~~i~~~~~p~~ai~ll~~a~~~~~~~~--~~~p~~~~~l~~~ 402 (758)
T 3pxi_A 362 DRYISDRFLPDKAIDLIDEAGSKVRLRS--FTTPPNLKELEQK 402 (758)
T ss_dssp HHSSCCSCTTHHHHHHHHHHHHHHHHHT--TC--CCTHHHHHH
T ss_pred hcccccCcCCcHHHHHHHHHHHHHHhhc--cCCCcchhhHHHH
Confidence 8765543 56778888876655444321 1344445555443
No 70
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.18 E-value=3.8e-10 Score=120.52 Aligned_cols=235 Identities=11% Similarity=0.025 Sum_probs=132.3
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCcccccc--ccccccCCCchHHHHHHHHHHhcCC----ceEEeCCCcccC--
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGES--HLLLVGDPGTGKSQFLKFAAKLSNR----SVITTGLGSTSA-- 385 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~--~iLL~G~pGtGKs~lar~ia~~~~~----~~~~~~~~~~~~-- 385 (663)
+.++|++.....+.-.+...... +.+. +++|+||||||||++++.+++.... .++...+.....
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~--------~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~ 88 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRN--------PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFT 88 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHS--------TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC--------CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHH
Confidence 56889987776666555431000 1113 7999999999999999999987632 333322211110
Q ss_pred CceEE-------EeecCc----hhHhhhhhhhhcc--CCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCc
Q 006051 386 GLTVT-------AVKDGG----EWMLEAGALVLAD--GGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTR 452 (663)
Q Consensus 386 gl~~~-------~~~~~~----~~~~~~g~l~~a~--~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~ 452 (663)
.+... .....+ ...........+. ..|++|||++.++.+.+..|..++++..- ....+
T Consensus 89 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~---------~~~~~ 159 (389)
T 1fnn_A 89 AIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK---------LGAFR 159 (389)
T ss_dssp HHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH---------HSSCC
T ss_pred HHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC---------CCcCC
Confidence 00000 000000 0000011111122 34999999999988888888888864210 00135
Q ss_pred EEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh-hhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHH
Q 006051 453 TIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI-VLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAML 531 (663)
Q Consensus 453 ~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl-i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l 531 (663)
+.+|+++|... ....+.+++.+||.. .+.+.... .+.+
T Consensus 160 ~~iI~~~~~~~---------~~~~l~~~~~~r~~~~~i~~~pl~--------------------------------~~~~ 198 (389)
T 1fnn_A 160 IALVIVGHNDA---------VLNNLDPSTRGIMGKYVIRFSPYT--------------------------------KDQI 198 (389)
T ss_dssp EEEEEEESSTH---------HHHTSCHHHHHHHTTCEEECCCCB--------------------------------HHHH
T ss_pred EEEEEEECCch---------HHHHhCHHhhhcCCCceEEeCCCC--------------------------------HHHH
Confidence 68888888641 011345678888875 34443222 2222
Q ss_pred HHHHHHH-Hc-cCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHHH
Q 006051 532 RRYIYFV-KG-YFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCIE 609 (663)
Q Consensus 532 ~~~i~~~-r~-~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~~ 609 (663)
..++... .. .....+++++.+.+..+.. +. ......++++|.+..+++.|...|....+..|+.+|+..|+.-..
T Consensus 199 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 199 FDILLDRAKAGLAEGSYSEDILQMIADITG--AQ-TPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHHHHHHHBCTTSSCHHHHHHHHHHHS--BS-STTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHHHh--hc-ccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 2222111 10 0123577777777766520 00 000011578999999999998888877888999999998887654
No 71
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.17 E-value=2.4e-10 Score=119.36 Aligned_cols=187 Identities=17% Similarity=0.199 Sum_probs=102.8
Q ss_pred ccccccccCCCchHHHHHHHHHHhc---CCceEEeCCCcccCCceEEEeecCchhH-hhhhhh--hhccCCeeecccccc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS---NRSVITTGLGSTSAGLTVTAVKDGGEWM-LEAGAL--VLADGGLCCIDEFDS 420 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~~~~~~~~gl~~~~~~~~~~~~-~~~g~l--~~a~~gvl~iDEid~ 420 (663)
..+++|+||||||||++++++++.+ ...++..........+ . +... ...+.+ ...+.+++||||++.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~vL~iDEi~~ 109 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM-----V--EHLKKGTINEFRNMYKSVDLLLLDDVQF 109 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH-----H--HHHHHTCHHHHHHHHHTCSEEEEECGGG
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH-----H--HHHHcCcHHHHHHHhcCCCEEEEcCccc
Confidence 3689999999999999999999876 3444332211000000 0 0000 000111 123578999999999
Q ss_pred cCh--hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh--hhhhhcCCCC
Q 006051 421 MRE--HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD--IVLVLLDTKN 496 (663)
Q Consensus 421 l~~--~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd--li~~l~d~~~ 496 (663)
++. ..+..++..++... . .....|++++|+...+ ..+.++|++||+ .++.+.. +
T Consensus 110 l~~~~~~~~~l~~~l~~~~----~-------~~~~iii~~~~~~~~l---------~~l~~~L~sR~~~~~~i~l~~--~ 167 (324)
T 1l8q_A 110 LSGKERTQIEFFHIFNTLY----L-------LEKQIILASDRHPQKL---------DGVSDRLVSRFEGGILVEIEL--D 167 (324)
T ss_dssp GTTCHHHHHHHHHHHHHHH----H-------TTCEEEEEESSCGGGC---------TTSCHHHHHHHHTSEEEECCC--C
T ss_pred ccCChHHHHHHHHHHHHHH----H-------CCCeEEEEecCChHHH---------HHhhhHhhhcccCceEEEeCC--C
Confidence 986 56677777765421 0 1112455555554211 246789999997 5555533 3
Q ss_pred hhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhH
Q 006051 497 PEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRM 576 (663)
Q Consensus 497 ~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~ 576 (663)
.+....+..+.+. .....+++++.+.|..+ . .++|.
T Consensus 168 ~~e~~~il~~~~~-------------------------------~~~~~l~~~~l~~l~~~-----------~--g~~r~ 203 (324)
T 1l8q_A 168 NKTRFKIIKEKLK-------------------------------EFNLELRKEVIDYLLEN-----------T--KNVRE 203 (324)
T ss_dssp HHHHHHHHHHHHH-------------------------------HTTCCCCHHHHHHHHHH-----------C--SSHHH
T ss_pred HHHHHHHHHHHHH-------------------------------hcCCCCCHHHHHHHHHh-----------C--CCHHH
Confidence 2222222221111 11335778887777766 2 56888
Q ss_pred HHHHHHHHHHHHh----ccCCCcc-ChhhHHHHHH
Q 006051 577 LESLIRLAQAHAR----LMFRNEV-TRLDAITAIL 606 (663)
Q Consensus 577 Le~lirla~a~A~----l~~~~~V-~~~Dv~~Ai~ 606 (663)
|++++..+.+..+ +.....| +.+++..++.
T Consensus 204 l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~ 238 (324)
T 1l8q_A 204 IEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVA 238 (324)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHH
Confidence 8888776655510 1112346 6666666654
No 72
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.15 E-value=6.3e-10 Score=115.65 Aligned_cols=142 Identities=20% Similarity=0.229 Sum_probs=88.5
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC-----CceEEeCCCcccCCc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN-----RSVITTGLGSTSAGL 387 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~-----~~~~~~~~~~~~~gl 387 (663)
..+++|++.++..+.-.+..+ + ..|+||+||||+|||++++.+++... ..++...... ..+.
T Consensus 20 ~~~~~g~~~~~~~l~~~l~~~-----------~-~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~-~~~~ 86 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAKDG-----------N-MPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASD-DRGI 86 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHHSC-----------C-CCCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTS-CCSH
T ss_pred HHHHHCCHHHHHHHHHHHHcC-----------C-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcc-ccCh
Confidence 456889999998888777654 1 14599999999999999999998642 2233322111 0000
Q ss_pred eEEEeecC-chhHhhhhhhhhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCC
Q 006051 388 TVTAVKDG-GEWMLEAGALVLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYD 466 (663)
Q Consensus 388 ~~~~~~~~-~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d 466 (663)
..+++. ..+......+......|++|||++.++...++.|+..+++. +..+.+|.++|...
T Consensus 87 --~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~-------------~~~~~~il~~~~~~--- 148 (323)
T 1sxj_B 87 --DVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELY-------------SNSTRFAFACNQSN--- 148 (323)
T ss_dssp --HHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHT-------------TTTEEEEEEESCGG---
T ss_pred --HHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhcc-------------CCCceEEEEeCChh---
Confidence 000000 00000000000223679999999999999999999999863 24567888888642
Q ss_pred CCCccccccCCChhhhhhhhhhhhhcCCC
Q 006051 467 PNLSLSVNTTLSGPLLSRFDIVLVLLDTK 495 (663)
Q Consensus 467 ~~~~~~~~~~l~~aLl~RFdli~~l~d~~ 495 (663)
.+.+++.+|+. .+.+..+.
T Consensus 149 ---------~l~~~l~sr~~-~i~~~~~~ 167 (323)
T 1sxj_B 149 ---------KIIEPLQSQCA-ILRYSKLS 167 (323)
T ss_dssp ---------GSCHHHHTTSE-EEECCCCC
T ss_pred ---------hchhHHHhhce-EEeecCCC
Confidence 45678999987 44453333
No 73
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.15 E-value=2.1e-10 Score=122.43 Aligned_cols=223 Identities=14% Similarity=0.092 Sum_probs=127.0
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc-----------CCceEEeCCCc
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS-----------NRSVITTGLGS 382 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~-----------~~~~~~~~~~~ 382 (663)
.+++|++.....+.-.+..... + ....+++|+||||||||++++.+++.+ +..++......
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~-----~---~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK-----N---EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT-----T---CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc-----C---CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 5688998777666544422000 0 122589999999999999999999865 44444332211
Q ss_pred cc-C-------------CceEEEeecC--chhHhhhhhhhhccCCeeecccccccChhh-HHh-HHHHHHhceeeeeccC
Q 006051 383 TS-A-------------GLTVTAVKDG--GEWMLEAGALVLADGGLCCIDEFDSMREHD-RAT-IHEAMEQQTISVAKAG 444 (663)
Q Consensus 383 ~~-~-------------gl~~~~~~~~--~~~~~~~g~l~~a~~gvl~iDEid~l~~~~-~~~-L~~~me~~~i~i~k~g 444 (663)
.. . |.... ..+. ..............+++++|||++.+.... +.. +...++..
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~-------- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVP-KHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSD-------- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCC-SSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTTSHHHHHHHHTSS--------
T ss_pred CCCCHHHHHHHHHHHhcCCCCC-CCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCCCceeHHHHhcCC--------
Confidence 00 0 00000 0000 000000000111223399999999987653 445 44444321
Q ss_pred ceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCC
Q 006051 445 LVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTD 524 (663)
Q Consensus 445 ~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~ 524 (663)
.++.+|+++|.... ...+.+++++||...+.+..+..++....+..++ ..
T Consensus 163 ------~~~~iI~~t~~~~~---------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~-~~-------------- 212 (384)
T 2qby_B 163 ------ANISVIMISNDINV---------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYA-EY-------------- 212 (384)
T ss_dssp ------SCEEEEEECSSTTT---------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHH-HH--------------
T ss_pred ------cceEEEEEECCCch---------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHH-Hh--------------
Confidence 46789999997521 1245678999997766664443333322222111 10
Q ss_pred CCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHH
Q 006051 525 IWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITA 604 (663)
Q Consensus 525 ~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~A 604 (663)
..-...+++++.+.+.++.. ..++++|.+..+++.|...|. ....|+.+|+..|
T Consensus 213 ---------------~~~~~~~~~~~~~~i~~~~~---------~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~ 266 (384)
T 2qby_B 213 ---------------GLIKGTYDDEILSYIAAISA---------KEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKA 266 (384)
T ss_dssp ---------------TSCTTSCCSHHHHHHHHHHH---------TTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHH
T ss_pred ---------------hcccCCcCHHHHHHHHHHHH---------hccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHH
Confidence 00123467777777776531 124679999999998888776 5578999999998
Q ss_pred HHHHH
Q 006051 605 ILCIE 609 (663)
Q Consensus 605 i~l~~ 609 (663)
+.-..
T Consensus 267 ~~~~~ 271 (384)
T 2qby_B 267 IVDYE 271 (384)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
No 74
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.14 E-value=7.8e-11 Score=128.24 Aligned_cols=186 Identities=13% Similarity=0.184 Sum_probs=112.9
Q ss_pred ccccccccCCCchHHHHHHHHHHhc-----CCceEEeCCCcccCCceEEEeecCchhH--hhh---hhhh--hc-cCCee
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS-----NRSVITTGLGSTSAGLTVTAVKDGGEWM--LEA---GALV--LA-DGGLC 413 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~-----~~~~~~~~~~~~~~gl~~~~~~~~~~~~--~~~---g~l~--~a-~~gvl 413 (663)
..+++|+||||||||+||+++++.. ...++...... + . .++. +.. ..+. .. ...++
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~----~-----~--~~~~~~~~~~~~~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEK----F-----L--NDLVDSMKEGKLNEFREKYRKKVDIL 198 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHH----H-----H--HHHHHHHHTTCHHHHHHHHTTTCSEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHH----H-----H--HHHHHHHHcccHHHHHHHhcCCCCEE
Confidence 3689999999999999999999865 23332211100 0 0 0000 000 1111 13 67899
Q ss_pred ecccccccCh--hhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh--hhh
Q 006051 414 CIDEFDSMRE--HDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD--IVL 489 (663)
Q Consensus 414 ~iDEid~l~~--~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd--li~ 489 (663)
+|||++.+.. ..+..++..++... .. ....|+++.|+...+ ..+.++|++||+ .++
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l~----~~-------~~~iIitt~~~~~~l---------~~l~~~L~sR~~~g~~i 258 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNELH----DS-------GKQIVICSDREPQKL---------SEFQDRLVSRFQMGLVA 258 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHHH----TT-------TCEEEEEESSCGGGC---------SSCCHHHHHHHHSSBCC
T ss_pred EEeCcccccCChHHHHHHHHHHHHHH----HC-------CCeEEEEECCCHHHH---------HHHHHHHHhhccCCeEE
Confidence 9999999986 57778888876432 01 112444444443211 136679999997 666
Q ss_pred hhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCC
Q 006051 490 VLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNA 569 (663)
Q Consensus 490 ~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~ 569 (663)
.+..+..++....+. +.+.. ....+++++.+.|...
T Consensus 259 ~l~~p~~e~r~~iL~----------------------------~~~~~----~~~~i~~e~l~~la~~------------ 294 (440)
T 2z4s_A 259 KLEPPDEETRKSIAR----------------------------KMLEI----EHGELPEEVLNFVAEN------------ 294 (440)
T ss_dssp BCCCCCHHHHHHHHH----------------------------HHHHH----HTCCCCTTHHHHHHHH------------
T ss_pred EeCCCCHHHHHHHHH----------------------------HHHHH----cCCCCCHHHHHHHHHh------------
Confidence 663333222222211 11111 1234677887777654
Q ss_pred ccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHHH
Q 006051 570 ARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILCI 608 (663)
Q Consensus 570 ~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l~ 608 (663)
+++++|.++.+++.+.+.|....+ .|+.+++..|+.-.
T Consensus 295 ~~gn~R~l~~~L~~~~~~a~~~~~-~It~~~~~~~l~~~ 332 (440)
T 2z4s_A 295 VDDNLRRLRGAIIKLLVYKETTGK-EVDLKEAILLLKDF 332 (440)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSS-CCCHHHHHHHTSTT
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence 356899999999999999987754 69999999887644
No 75
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.13 E-value=9.5e-10 Score=116.87 Aligned_cols=208 Identities=19% Similarity=0.134 Sum_probs=119.4
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEe--CCCc--------
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGS-------- 382 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~--~~~~-------- 382 (663)
..+++|++.++..+.-++..| +....+||+||||||||++++.+++......... .++.
T Consensus 15 ~~~~vg~~~~~~~L~~~l~~~-----------~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 15 FADVVGQEHVLTALANGLSLG-----------RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp TTTSCSCHHHHHHHHHHHHHT-----------CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred hhhccCcHHHHHHHHHHHHhC-----------CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 346899999988888877654 1224589999999999999999998654311000 0000
Q ss_pred --ccCCceEEEeec-C--chhHhhhhhhh----hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcE
Q 006051 383 --TSAGLTVTAVKD-G--GEWMLEAGALV----LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRT 453 (663)
Q Consensus 383 --~~~gl~~~~~~~-~--~~~~~~~g~l~----~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~ 453 (663)
....+......+ . .....-...+. ...+.|++|||++.++.+.++.|+..+++. +.++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~-------------~~~~ 150 (373)
T 1jr3_A 84 QGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEP-------------PEHV 150 (373)
T ss_dssp TSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSC-------------CSSE
T ss_pred ccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcC-------------CCce
Confidence 000111000000 0 00000000111 123579999999999999999999999852 3456
Q ss_pred EEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHH
Q 006051 454 IIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRR 533 (663)
Q Consensus 454 ~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~ 533 (663)
.+|+++|... .+.+++.+|+ ..+.+... +.+.+..
T Consensus 151 ~~Il~~~~~~------------~l~~~l~sr~-~~i~~~~l--------------------------------~~~~~~~ 185 (373)
T 1jr3_A 151 KFLLATTDPQ------------KLPVTILSRC-LQFHLKAL--------------------------------DVEQIRH 185 (373)
T ss_dssp EEEEEESCGG------------GSCHHHHTTS-EEEECCCC--------------------------------CHHHHHH
T ss_pred EEEEEeCChH------------hCcHHHHhhe-eEeeCCCC--------------------------------CHHHHHH
Confidence 7888887542 3556888887 33334222 2233333
Q ss_pred HHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHH
Q 006051 534 YIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAI 605 (663)
Q Consensus 534 ~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai 605 (663)
++...-......+++++.+.|..+ ..+++|.+.+++.-+...+ ...|+.+|+..++
T Consensus 186 ~l~~~~~~~~~~~~~~a~~~l~~~------------~~G~~r~~~~~l~~~~~~~----~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 186 QLEHILNEEHIAHEPRALQLLARA------------AEGSLRDALSLTDQAIASG----DGQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHTCCBCHHHHHHHHHH------------SSSCHHHHHHHHHHHHHHT----TTCBCHHHHHHHT
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHH------------CCCCHHHHHHHHHHHHHhc----CCcccHHHHHHHh
Confidence 332111111235677777766655 2456888877776554333 3568888876654
No 76
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.11 E-value=2.2e-10 Score=133.61 Aligned_cols=144 Identities=19% Similarity=0.208 Sum_probs=82.6
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc----------CCceEEeCCCcc
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLGST 383 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~----------~~~~~~~~~~~~ 383 (663)
..++|++...+.+.-.|... ...|+||+||||||||++++++++.. ...++....+..
T Consensus 186 d~~iGr~~~i~~l~~~l~~~------------~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l 253 (758)
T 1r6b_X 186 DPLIGREKELERAIQVLCRR------------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSL 253 (758)
T ss_dssp CCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC--
T ss_pred CCccCCHHHHHHHHHHHhcc------------CCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHH
Confidence 45789988777777666432 23689999999999999999999865 223333322221
Q ss_pred cCCceEEEeecCchhHhhh----hhhhhccCCeeecccccccC---------hhhHHhHHHHHHhceeeeeccCceeecC
Q 006051 384 SAGLTVTAVKDGGEWMLEA----GALVLADGGLCCIDEFDSMR---------EHDRATIHEAMEQQTISVAKAGLVTTLS 450 (663)
Q Consensus 384 ~~gl~~~~~~~~~~~~~~~----g~l~~a~~gvl~iDEid~l~---------~~~~~~L~~~me~~~i~i~k~g~~~~~~ 450 (663)
..|. ...|.+.... ..+..+.++|+||||++.+. .+..+.|..++++
T Consensus 254 ~~~~-----~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--------------- 313 (758)
T 1r6b_X 254 LAGT-----KYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--------------- 313 (758)
T ss_dssp -CCC-----CCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS---------------
T ss_pred hccc-----cccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC---------------
Confidence 1110 1112222111 11223457899999999982 1222233333332
Q ss_pred CcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChh
Q 006051 451 TRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPE 498 (663)
Q Consensus 451 ~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~ 498 (663)
.++.+|++||+.. +.....+.++|.+||+ .+.+ +.++.+
T Consensus 314 ~~~~~I~at~~~~-------~~~~~~~d~aL~~Rf~-~i~v-~~p~~~ 352 (758)
T 1r6b_X 314 GKIRVIGSTTYQE-------FSNIFEKDRALARRFQ-KIDI-TEPSIE 352 (758)
T ss_dssp CCCEEEEEECHHH-------HHCCCCCTTSSGGGEE-EEEC-CCCCHH
T ss_pred CCeEEEEEeCchH-------HhhhhhcCHHHHhCce-EEEc-CCCCHH
Confidence 2457899999741 1111345568999998 4555 444433
No 77
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.08 E-value=2.2e-11 Score=141.97 Aligned_cols=157 Identities=21% Similarity=0.189 Sum_probs=94.4
Q ss_pred ccccCchhHHHHHHHHHHhCCceeec-CCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVD-ASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~-~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~ 391 (663)
..++.|++.+|+.+.-.+........ .....++...++||+||||||||++|+++++.+..+++.......... .
T Consensus 476 ~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~----~ 551 (806)
T 1ypw_A 476 WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTM----W 551 (806)
T ss_dssp SCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTC----C
T ss_pred ccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhh----h
Confidence 34578999999998877654332211 112334566789999999999999999999998877765433221111 0
Q ss_pred eecCchhHhhhhh-hh---hccCCeeecccccccChh--------------hHHhHHHHHHhceeeeeccCceeecCCcE
Q 006051 392 VKDGGEWMLEAGA-LV---LADGGLCCIDEFDSMREH--------------DRATIHEAMEQQTISVAKAGLVTTLSTRT 453 (663)
Q Consensus 392 ~~~~~~~~~~~g~-l~---~a~~gvl~iDEid~l~~~--------------~~~~L~~~me~~~i~i~k~g~~~~~~~~~ 453 (663)
. |+.....+. +. ....+|+||||+|.+... ..+.|+..|+... -..++
T Consensus 552 ~---g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~-----------~~~~v 617 (806)
T 1ypw_A 552 F---GESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS-----------TKKNV 617 (806)
T ss_dssp T---TTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC-----------------CC
T ss_pred c---CccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhccc-----------ccCCe
Confidence 0 111001111 11 224589999999997422 1233333333211 12467
Q ss_pred EEEEeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhH
Q 006051 454 IIFGATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEW 499 (663)
Q Consensus 454 ~iiaatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~ 499 (663)
.||+|||+... +++++++ ||+.++.+..+..++.
T Consensus 618 ~vI~tTN~~~~------------ld~allrpgRf~~~i~~~~p~~~~r 653 (806)
T 1ypw_A 618 FIIGATNRPDI------------IDPAILRPGRLDQLIYIPLPDEKSR 653 (806)
T ss_dssp BCCCCCBSCGG------------GSCTTSSGGGTTSCCCCCCCCCSHH
T ss_pred EEEEecCCccc------------CCHHHhCccccCceeecCCCCHHHH
Confidence 89999998743 4458998 9998888854444443
No 78
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.05 E-value=3.1e-09 Score=118.15 Aligned_cols=123 Identities=18% Similarity=0.175 Sum_probs=70.3
Q ss_pred cccCchhHHHHHHHHHHhCCceee----cCCCC-ccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCce
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHV----DASGT-KVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLT 388 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~----~~~~~-~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~ 388 (663)
.++.|++.+++.+.-.+....... ...|. ......++||+||||||||++|+++++.++..++............
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~ 118 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTL 118 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHH
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHH
Confidence 468999988888877665411000 00010 0112368999999999999999999999887776654332111000
Q ss_pred E-EEeecCchhHhhhhhh--------hhccCCeeecccccccChhhH---HhHHHHHHhc
Q 006051 389 V-TAVKDGGEWMLEAGAL--------VLADGGLCCIDEFDSMREHDR---ATIHEAMEQQ 436 (663)
Q Consensus 389 ~-~~~~~~~~~~~~~g~l--------~~a~~gvl~iDEid~l~~~~~---~~L~~~me~~ 436 (663)
. ..+..........+.+ ....++|++|||++.+....+ ..|...++..
T Consensus 119 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~ 178 (516)
T 1sxj_A 119 LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT 178 (516)
T ss_dssp HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC
T ss_pred HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc
Confidence 0 0000000000000111 113567999999999987665 6677777753
No 79
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.02 E-value=8.8e-10 Score=129.96 Aligned_cols=202 Identities=17% Similarity=0.166 Sum_probs=113.2
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc----------CCceEEeCCCc
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS----------NRSVITTGLGS 382 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~----------~~~~~~~~~~~ 382 (663)
...++|++.....++-.+..+ ...|+||+||||||||++++.+++.. +..++....+.
T Consensus 169 ld~viGr~~~i~~l~~~l~~~------------~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~ 236 (854)
T 1qvr_A 169 LDPVIGRDEEIRRVIQILLRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGS 236 (854)
T ss_dssp SCCCCSCHHHHHHHHHHHHCS------------SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC--
T ss_pred CcccCCcHHHHHHHHHHHhcC------------CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHH
Confidence 446889988777777766542 23689999999999999999999865 44455443322
Q ss_pred ccCCceEEEeecCchhHhhhhh-hhh---c-cCCeeecccccccC--------hhhHHhHHHHHHhceeeeeccCceeec
Q 006051 383 TSAGLTVTAVKDGGEWMLEAGA-LVL---A-DGGLCCIDEFDSMR--------EHDRATIHEAMEQQTISVAKAGLVTTL 449 (663)
Q Consensus 383 ~~~gl~~~~~~~~~~~~~~~g~-l~~---a-~~gvl~iDEid~l~--------~~~~~~L~~~me~~~i~i~k~g~~~~~ 449 (663)
..+|. ...|++...... +.. . .+.|+||||++.+. .+..+.|..+++.+.+
T Consensus 237 l~~g~-----~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i----------- 300 (854)
T 1qvr_A 237 LLAGA-----KYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGEL----------- 300 (854)
T ss_dssp --------------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCC-----------
T ss_pred hhccC-----ccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCe-----------
Confidence 21110 111222211111 111 1 34599999999986 3445567777776543
Q ss_pred CCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCCCHH
Q 006051 450 STRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIWPLA 529 (663)
Q Consensus 450 ~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~~~~ 529 (663)
.+|+|||+.. +.. ..+.++|.+||+. +.+.. ++.+....+.++++..... .....++.+
T Consensus 301 ----~~I~at~~~~-------~~~-~~~d~aL~rRf~~-i~l~~-p~~~e~~~iL~~~~~~~~~-------~~~~~i~~~ 359 (854)
T 1qvr_A 301 ----RLIGATTLDE-------YRE-IEKDPALERRFQP-VYVDE-PTVEETISILRGLKEKYEV-------HHGVRISDS 359 (854)
T ss_dssp ----CEEEEECHHH-------HHH-HTTCTTTCSCCCC-EEECC-CCHHHHHHHHHHHHHHHHH-------HTTCEECHH
T ss_pred ----EEEEecCchH-------Hhh-hccCHHHHhCCce-EEeCC-CCHHHHHHHHHhhhhhhhh-------hcCCCCCHH
Confidence 6888888641 111 3456799999996 55644 4444334444444432211 011246778
Q ss_pred HHHHHHHHHHccCCCc-cCHHHHHHHHHHHHHHHh
Q 006051 530 MLRRYIYFVKGYFKPI-LTKEAEKVISSYYQLQRR 563 (663)
Q Consensus 530 ~l~~~i~~~r~~~~p~-ls~ea~~~l~~~y~~~r~ 563 (663)
.+...+.++.+++... +.+.+.+++.......|.
T Consensus 360 al~~~~~ls~r~i~~~~lp~kai~lldea~a~~~~ 394 (854)
T 1qvr_A 360 AIIAAATLSHRYITERRLPDKAIDLIDEAAARLRM 394 (854)
T ss_dssp HHHHHHHHHHHHCCSSCTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccChHHHHHHHHHHHHHHHh
Confidence 8888888887776654 456677777766555554
No 80
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.00 E-value=1.2e-10 Score=110.80 Aligned_cols=144 Identities=22% Similarity=0.254 Sum_probs=84.9
Q ss_pred HhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC----------CceEE
Q 006051 308 ILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN----------RSVIT 377 (663)
Q Consensus 308 l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~----------~~~~~ 377 (663)
+...-..+++|++...+.+.-.+..+ ...++||+||||||||++++.+++... ..++.
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~ 83 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQRR------------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLA 83 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhhccccccccchHHHHHHHHHHhcC------------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEE
Confidence 34445667899998888877776542 236799999999999999999998652 22322
Q ss_pred eCCCcccCCceEEEeecCchhHhhhhh----hhhcc-CCeeecccccccCh--------hhHHhHHHHHHhceeeeeccC
Q 006051 378 TGLGSTSAGLTVTAVKDGGEWMLEAGA----LVLAD-GGLCCIDEFDSMRE--------HDRATIHEAMEQQTISVAKAG 444 (663)
Q Consensus 378 ~~~~~~~~gl~~~~~~~~~~~~~~~g~----l~~a~-~gvl~iDEid~l~~--------~~~~~L~~~me~~~i~i~k~g 444 (663)
........+. ...+.+...... +..+. +.|++|||++.+.. ..++.+...++.+
T Consensus 84 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~-------- 150 (195)
T 1jbk_A 84 LDMGALVAGA-----KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG-------- 150 (195)
T ss_dssp ECHHHHHTTT-----CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT--------
T ss_pred eeHHHHhccC-----CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC--------
Confidence 2111100000 000111111111 11233 44899999999953 3356666666543
Q ss_pred ceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 445 LVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 445 ~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
++.+|+++|... ......+.+++++||+ .+.+
T Consensus 151 -------~~~~i~~~~~~~-------~~~~~~~~~~l~~r~~-~i~~ 182 (195)
T 1jbk_A 151 -------ELHCVGATTLDE-------YRQYIEKDAALERRFQ-KVFV 182 (195)
T ss_dssp -------SCCEEEEECHHH-------HHHHTTTCHHHHTTEE-EEEC
T ss_pred -------CeEEEEeCCHHH-------HHHHHhcCHHHHHHhc-eeec
Confidence 336788888641 1111246789999998 3445
No 81
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.98 E-value=1.9e-10 Score=109.16 Aligned_cols=140 Identities=21% Similarity=0.196 Sum_probs=82.6
Q ss_pred hhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC----------CceEEe
Q 006051 309 LRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN----------RSVITT 378 (663)
Q Consensus 309 ~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~----------~~~~~~ 378 (663)
...-..+++|++...+.+.-.+..+ ...++||+||||||||++++.+++.+. ..++..
T Consensus 17 ~~~~~~~~~g~~~~~~~l~~~l~~~------------~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~ 84 (187)
T 2p65_A 17 RAGKLDPVIGRDTEIRRAIQILSRR------------TKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSL 84 (187)
T ss_dssp HTTCSCCCCSCHHHHHHHHHHHTSS------------SSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEE
T ss_pred hccccchhhcchHHHHHHHHHHhCC------------CCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEE
Confidence 3344567899998877777776442 236899999999999999999998652 222222
Q ss_pred CCCcccCCceEEEeecCchhHhh----hhhhhhc-cCCeeecccccccC---------hhhHHhHHHHHHhceeeeeccC
Q 006051 379 GLGSTSAGLTVTAVKDGGEWMLE----AGALVLA-DGGLCCIDEFDSMR---------EHDRATIHEAMEQQTISVAKAG 444 (663)
Q Consensus 379 ~~~~~~~gl~~~~~~~~~~~~~~----~g~l~~a-~~gvl~iDEid~l~---------~~~~~~L~~~me~~~i~i~k~g 444 (663)
.......+ ....+.+... ...+..+ .+.+++|||++.+. .+..+.|...++.+.
T Consensus 85 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~------- 152 (187)
T 2p65_A 85 DLSSLIAG-----AKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGE------- 152 (187)
T ss_dssp CHHHHHHH-----CCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTC-------
T ss_pred eHHHhhcC-----CCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCC-------
Confidence 11100000 0000111100 1112222 34599999999996 344555666665433
Q ss_pred ceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh
Q 006051 445 LVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 445 ~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
+.+|+++|+.. ......+.+++++||+.
T Consensus 153 --------~~ii~~~~~~~-------~~~~~~~~~~l~~R~~~ 180 (187)
T 2p65_A 153 --------LRCIGATTVSE-------YRQFIEKDKALERRFQQ 180 (187)
T ss_dssp --------SCEEEEECHHH-------HHHHTTTCHHHHHHEEE
T ss_pred --------eeEEEecCHHH-------HHHHHhccHHHHHhcCc
Confidence 37889998741 01112456899999995
No 82
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=98.97 E-value=5.9e-09 Score=110.91 Aligned_cols=227 Identities=15% Similarity=0.078 Sum_probs=126.2
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc------CCceEEeCCCccc--
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS------NRSVITTGLGSTS-- 384 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~------~~~~~~~~~~~~~-- 384 (663)
...++|.+.....+.-.+..... -....+++|+||||||||++++.+++.. ...++........
T Consensus 19 p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 19 PDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp CSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH
T ss_pred CCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH
Confidence 35688998887777665543100 0123689999999999999999999865 3334332211000
Q ss_pred --------CCceEEE-eecC--chhHhhh-hhhhhc-cCCeeecccccccC----hhhHHhHHHHHHhceeeeeccCcee
Q 006051 385 --------AGLTVTA-VKDG--GEWMLEA-GALVLA-DGGLCCIDEFDSMR----EHDRATIHEAMEQQTISVAKAGLVT 447 (663)
Q Consensus 385 --------~gl~~~~-~~~~--~~~~~~~-g~l~~a-~~gvl~iDEid~l~----~~~~~~L~~~me~~~i~i~k~g~~~ 447 (663)
..+.... ..+. .+..... ..+... .+.+++|||++.+. .+....+.+.++..
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------- 159 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------- 159 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC-----------
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc-----------
Confidence 0000000 0000 0000000 111111 25599999999986 33444555555432
Q ss_pred ecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhh-hhhhcCCCChhHHHHHHHHHhhhcCCCCCCCCCCCCCCC
Q 006051 448 TLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDI-VLVLLDTKNPEWDAVVSSHILAEGGLSEEKDTEPLTDIW 526 (663)
Q Consensus 448 ~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdl-i~~l~d~~~~~~d~~i~~~il~~~~~~~~~~~~~~~~~~ 526 (663)
-..++.+|+++|.... ...+.+++.+||.. .+.+.....
T Consensus 160 -~~~~~~~I~~~~~~~~---------~~~~~~~~~~r~~~~~i~l~~l~~------------------------------ 199 (386)
T 2qby_A 160 -NKSKISFIGITNDVKF---------VDLLDPRVKSSLSEEEIIFPPYNA------------------------------ 199 (386)
T ss_dssp -CC--EEEEEEESCGGG---------GGGCTTHHHHTTTTEEEEECCCCH------------------------------
T ss_pred -CCCeEEEEEEECCCCh---------HhhhCHHHhccCCCeeEEeCCCCH------------------------------
Confidence 1245688888886421 01345578888864 444433322
Q ss_pred CHHHHHHHHHH-HHccC-CCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHH
Q 006051 527 PLAMLRRYIYF-VKGYF-KPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITA 604 (663)
Q Consensus 527 ~~~~l~~~i~~-~r~~~-~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~A 604 (663)
+.+..++.. +.... ...+++++.+.+..+... ..+++|.+..+++.+...|....+..|+.+|+..|
T Consensus 200 --~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a 268 (386)
T 2qby_A 200 --EELEDILTKRAQMAFKPGVLPDNVIKLCAALAAR---------EHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMA 268 (386)
T ss_dssp --HHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHH---------TTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHH
T ss_pred --HHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHH---------hcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHH
Confidence 222222211 11111 235777777777765310 12568988889998888888777889999999998
Q ss_pred HHHHH
Q 006051 605 ILCIE 609 (663)
Q Consensus 605 i~l~~ 609 (663)
+.-+.
T Consensus 269 ~~~~~ 273 (386)
T 2qby_A 269 KEEIE 273 (386)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 86654
No 83
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.96 E-value=1.1e-09 Score=139.90 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=89.6
Q ss_pred cccccccCCCchHHHHHHHH-HHhcCCceEEeCCCcccCCceEEEeecC-chh----Hhhhhhhh----hccCCeeeccc
Q 006051 348 SHLLLVGDPGTGKSQFLKFA-AKLSNRSVITTGLGSTSAGLTVTAVKDG-GEW----MLEAGALV----LADGGLCCIDE 417 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~i-a~~~~~~~~~~~~~~~~~gl~~~~~~~~-~~~----~~~~g~l~----~a~~gvl~iDE 417 (663)
.|+||+||||||||++|+.+ ++..+..+......+.. +...+.+. ... ....|.+. .....|+||||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~t---s~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDE 1344 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDT---TTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDE 1344 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTC---CHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEET
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCC---CHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecc
Confidence 79999999999999999554 44433333333222111 00000000 000 00012111 12345999999
Q ss_pred ccccChh------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhh
Q 006051 418 FDSMREH------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVL 491 (663)
Q Consensus 418 id~l~~~------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l 491 (663)
++....+ ....|.+.||.|.+...+.+....+ .++.+||||||+|.. -...++++|++|| .++.+
T Consensus 1345 inmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~-~~i~lIaA~Npp~~g-------GR~~l~~rllRrf-~vi~i 1415 (2695)
T 4akg_A 1345 INLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTI-ERIHIVGACNPPTDP-------GRIPMSERFTRHA-AILYL 1415 (2695)
T ss_dssp TTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEE-ESEEEEEEECCTTST-------TCCCCCHHHHTTE-EEEEC
T ss_pred cccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEe-cCEEEEEecCCCccC-------CCccCChhhhhee-eEEEe
Confidence 9986544 5678999999988877666666555 789999999997311 1136889999999 44556
Q ss_pred cCCCChhHHHHHHHHHhhhc
Q 006051 492 LDTKNPEWDAVVSSHILAEG 511 (663)
Q Consensus 492 ~d~~~~~~d~~i~~~il~~~ 511 (663)
+.++.+....|-..+++.+
T Consensus 1416 -~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1416 -GYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp -CCCTTTHHHHHHHHHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHH
Confidence 4444444444444455444
No 84
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=98.94 E-value=4e-09 Score=111.30 Aligned_cols=142 Identities=15% Similarity=0.094 Sum_probs=82.2
Q ss_pred cccCchhHHHHHHHHHH-hCCceeecCCCCccccccccccccCCCchHHHHHHHHHH-hcCCc---eEEeCC--------
Q 006051 314 PQVFGLFTVKLAVALTL-IGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAK-LSNRS---VITTGL-------- 380 (663)
Q Consensus 314 p~i~G~~~~K~aill~l-~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~-~~~~~---~~~~~~-------- 380 (663)
.+++|++.++..+.-.+ ..| +. .|++|+||||+|||++++.+++ +.+.. +...+.
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~-----------~~-~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR-----------DL-PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT-----------CC-CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred HHhcCCHHHHHHHHHHHhhCC-----------CC-CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 46789999888777665 332 12 4599999999999999999999 43321 000000
Q ss_pred ----CcccCCceEEEe-ecCc--h---hHhhhhhhh--------------hccCCeeecccccccChhhHHhHHHHHHhc
Q 006051 381 ----GSTSAGLTVTAV-KDGG--E---WMLEAGALV--------------LADGGLCCIDEFDSMREHDRATIHEAMEQQ 436 (663)
Q Consensus 381 ----~~~~~gl~~~~~-~~~~--~---~~~~~g~l~--------------~a~~gvl~iDEid~l~~~~~~~L~~~me~~ 436 (663)
+........... .+.+ . .......+. ..+..|++|||++.++...++.|++.|++-
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~~ 161 (354)
T 1sxj_E 82 KLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKY 161 (354)
T ss_dssp ----CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHS
T ss_pred cceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHhh
Confidence 000000000000 0000 0 000000000 124459999999999999999999999863
Q ss_pred eeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcC
Q 006051 437 TISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLD 493 (663)
Q Consensus 437 ~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d 493 (663)
+.++.+|.+||... .+.+++.+|+ ..+.+..
T Consensus 162 -------------~~~~~~Il~t~~~~------------~l~~~l~sR~-~~~~~~~ 192 (354)
T 1sxj_E 162 -------------SKNIRLIMVCDSMS------------PIIAPIKSQC-LLIRCPA 192 (354)
T ss_dssp -------------TTTEEEEEEESCSC------------SSCHHHHTTS-EEEECCC
T ss_pred -------------cCCCEEEEEeCCHH------------HHHHHHHhhc-eEEecCC
Confidence 23457777777542 3567899999 4555533
No 85
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.94 E-value=2.5e-08 Score=127.50 Aligned_cols=189 Identities=18% Similarity=0.235 Sum_probs=128.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
.++++.||||||||.+++++|+.+++.++...+... ++...+ |.. -.| ....|.++|+|||++++++..+
T Consensus 646 ~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~---ld~~~l---g~~--~~g--~~~~Gaw~~~DE~nr~~~evLs 715 (2695)
T 4akg_A 646 YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDS---FDYQVL---SRL--LVG--ITQIGAWGCFDEFNRLDEKVLS 715 (2695)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSS---CCHHHH---HHH--HHH--HHHHTCEEEEETTTSSCHHHHH
T ss_pred CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCC---CChhHh---hHH--HHH--HHhcCCEeeehhhhhcChHHHH
Confidence 678999999999999999999999999888765432 221100 110 012 1235789999999999999888
Q ss_pred hH-------HHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhHH
Q 006051 428 TI-------HEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEWD 500 (663)
Q Consensus 428 ~L-------~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~d 500 (663)
.+ ++++.++..++.-.|....++..+.+++|+||. | .....+|.+|.+||-- +.+ +.|+.+.
T Consensus 716 ~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPg--y------~g~~eLP~~Lk~~Fr~-v~m-~~Pd~~~- 784 (2695)
T 4akg_A 716 AVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPG--Y------NGRSELPENLKKSFRE-FSM-KSPQSGT- 784 (2695)
T ss_dssp HHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCC--S------SSSCCCCHHHHTTEEE-EEC-CCCCHHH-
T ss_pred HHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCC--c------cCcccccHHHHhheEE-EEe-eCCCHHH-
Confidence 77 677777777777788888899999999999994 1 1224789999999953 333 3343222
Q ss_pred HHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhccc-CCCccccHhHHHH
Q 006051 501 AVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSAT-QNAARTTVRMLES 579 (663)
Q Consensus 501 ~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~-~~~~~~t~R~Le~ 579 (663)
+.+.+-++. .+...+.....+...|...|...+ ..+....+|.+.+
T Consensus 785 ------------------------------i~ei~l~s~---Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalks 831 (2695)
T 4akg_A 785 ------------------------------IAEMILQIM---GFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKG 831 (2695)
T ss_dssp ------------------------------HHHHHHHHH---HCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHH
T ss_pred ------------------------------HHHHHHHhc---CCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHH
Confidence 222222221 122234455667777777665432 3455678999999
Q ss_pred HHHHHHHHHhc
Q 006051 580 LIRLAQAHARL 590 (663)
Q Consensus 580 lirla~a~A~l 590 (663)
+++.|....+-
T Consensus 832 vL~~ag~lkr~ 842 (2695)
T 4akg_A 832 VLRNCSPLISE 842 (2695)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHhhcc
Confidence 99987765553
No 86
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=98.87 E-value=9.9e-09 Score=105.83 Aligned_cols=213 Identities=6% Similarity=-0.058 Sum_probs=105.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCC----------ceEEeCCCc-ccC---------CceEEEee-cCchhHhh--hh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR----------SVITTGLGS-TSA---------GLTVTAVK-DGGEWMLE--AG 403 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~----------~~~~~~~~~-~~~---------gl~~~~~~-~~~~~~~~--~g 403 (663)
+.+++|+||||||||++++++++.+.. .++..++.. ... .+...... +.....+. ..
T Consensus 45 ~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~ 124 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYIT 124 (318)
T ss_dssp CCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHH
Confidence 368999999999999999999986521 222222111 000 00000000 00000000 00
Q ss_pred hh--hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhh
Q 006051 404 AL--VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPL 481 (663)
Q Consensus 404 ~l--~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aL 481 (663)
.+ ......|++|||+|.+. .++.|+..++-... -..++.+|+.+|.....+ ..+.+++
T Consensus 125 ~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~----------~~s~~~vI~i~n~~d~~~--------~~L~~~v 184 (318)
T 3te6_A 125 NVPKAKKRKTLILIQNPENLL--SEKILQYFEKWISS----------KNSKLSIICVGGHNVTIR--------EQINIMP 184 (318)
T ss_dssp HSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHHC----------SSCCEEEEEECCSSCCCH--------HHHHTCH
T ss_pred HhhhccCCceEEEEecHHHhh--cchHHHHHHhcccc----------cCCcEEEEEEecCcccch--------hhcchhh
Confidence 00 11234699999999998 56777776652211 135678999999752111 1234567
Q ss_pred hhhhhh-hhhhcCCCChhHHHHHHHHHhhhcCCCC-CCCCCCCCC---CCCHHHHHHHHHHHHccCCCccCHHHHHHHHH
Q 006051 482 LSRFDI-VLVLLDTKNPEWDAVVSSHILAEGGLSE-EKDTEPLTD---IWPLAMLRRYIYFVKGYFKPILTKEAEKVISS 556 (663)
Q Consensus 482 l~RFdl-i~~l~d~~~~~~d~~i~~~il~~~~~~~-~~~~~~~~~---~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~ 556 (663)
.|||.. ++.+..+..++...++..++-....... ..+.+.... ++....-...-.-. ....+.++++|.+++.+
T Consensus 185 ~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~ai~~~A~ 263 (318)
T 3te6_A 185 SLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNV-IVINHKINNKITQLIAK 263 (318)
T ss_dssp HHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CTTE-EEECEECCHHHHHHHHH
T ss_pred hccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccc-cccccccCHHHHHHHHH
Confidence 899974 5666555556666666555543321100 000000000 00000000000000 01234689999998887
Q ss_pred HHHHHHhcccCCCccccHhHHHHHHHHHHHHHh
Q 006051 557 YYQLQRRSATQNAARTTVRMLESLIRLAQAHAR 589 (663)
Q Consensus 557 ~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~ 589 (663)
..... .+.+|..-.++|.|...|.
T Consensus 264 ~vA~~---------~GD~R~Al~ilr~A~~~ae 287 (318)
T 3te6_A 264 NVANV---------SGSTEKAFKICEAAVEISK 287 (318)
T ss_dssp HHHHH---------HCSHHHHHHHHHHHHHHHH
T ss_pred HHHhh---------CChHHHHHHHHHHHHHHHH
Confidence 54322 2457777777776666654
No 87
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.77 E-value=2e-08 Score=128.90 Aligned_cols=149 Identities=17% Similarity=0.182 Sum_probs=91.0
Q ss_pred cccccccCCCchHHHHHHHH-HHhcCCceEEeCCCcccCCceEEEeecC----chhHhh--hhhhhhcc----CCeeecc
Q 006051 348 SHLLLVGDPGTGKSQFLKFA-AKLSNRSVITTGLGSTSAGLTVTAVKDG----GEWMLE--AGALVLAD----GGLCCID 416 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~i-a~~~~~~~~~~~~~~~~~gl~~~~~~~~----~~~~~~--~g~l~~a~----~gvl~iD 416 (663)
.|+||+||||||||.+++.. +++.+..++....++.. +...+.+. .+.... .|.+..+. ..|+|||
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T---ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiD 1381 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT---TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCD 1381 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC---CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEET
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC---CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEec
Confidence 79999999999999877554 44434344444333221 10000000 000000 14443332 2499999
Q ss_pred cccccChh------hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhh
Q 006051 417 EFDSMREH------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLV 490 (663)
Q Consensus 417 Eid~l~~~------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~ 490 (663)
|++....+ ..+.|+++|++|.+...+.+....+ .++.++||+||+|.- ....++++|++||-. +.
T Consensus 1382 DiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i-~d~~~vaamnPp~~g-------Gr~~l~~Rf~r~F~v-i~ 1452 (3245)
T 3vkg_A 1382 EINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKL-DKIQFVGACNPPTDA-------GRVQLTHRFLRHAPI-LL 1452 (3245)
T ss_dssp TTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEE-SSEEEEEEECCTTST-------TCCCCCHHHHTTCCE-EE
T ss_pred ccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEe-cCeEEEEEcCCCCCC-------CCccCCHHHHhhceE-EE
Confidence 99987755 6778999999998877655555555 789999999997311 114688999999977 44
Q ss_pred hcCCCChhHHHHHHHHHhh
Q 006051 491 LLDTKNPEWDAVVSSHILA 509 (663)
Q Consensus 491 l~d~~~~~~d~~i~~~il~ 509 (663)
+ +.++.+.-..|...++.
T Consensus 1453 i-~~ps~esL~~If~til~ 1470 (3245)
T 3vkg_A 1453 V-DFPSTSSLTQIYGTFNR 1470 (3245)
T ss_dssp C-CCCCHHHHHHHHHHHHH
T ss_pred e-CCCCHHHHHHHHHHHHH
Confidence 5 44444444444444443
No 88
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.74 E-value=5.1e-08 Score=102.08 Aligned_cols=140 Identities=16% Similarity=0.162 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEe--CCCc--------ccCCce
Q 006051 319 LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT--GLGS--------TSAGLT 388 (663)
Q Consensus 319 ~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~--~~~~--------~~~gl~ 388 (663)
++.+...+.-++..| +.+..+||+||||+|||++|+++++......... .++. ......
T Consensus 7 ~~~~~~~l~~~i~~~-----------~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQAG-----------RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHHTT-----------CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHHcC-----------CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 445556666666554 2224599999999999999999998643211100 0000 000000
Q ss_pred EEEeec------CchhHhh--hhhh----hhccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 389 VTAVKD------GGEWMLE--AGAL----VLADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 389 ~~~~~~------~~~~~~~--~g~l----~~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
...+.. .+.-..+ ...+ ..+...|++|||++.|+.+.+++|+..||+. +.++.+|
T Consensus 76 ~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep-------------~~~~~~I 142 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEP-------------PAETWFF 142 (334)
T ss_dssp EEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSC-------------CTTEEEE
T ss_pred EEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCC-------------CCCeEEE
Confidence 111110 0100000 0011 1234579999999999999999999999863 3456777
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCC
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTK 495 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~ 495 (663)
.+||.. ..+.++++||+. .+.+..+.
T Consensus 143 l~t~~~------------~~l~~ti~SRc~-~~~~~~~~ 168 (334)
T 1a5t_A 143 LATREP------------ERLLATLRSRCR-LHYLAPPP 168 (334)
T ss_dssp EEESCG------------GGSCHHHHTTSE-EEECCCCC
T ss_pred EEeCCh------------HhCcHHHhhcce-eeeCCCCC
Confidence 777753 257789999996 45554333
No 89
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=98.73 E-value=4.5e-08 Score=100.85 Aligned_cols=144 Identities=11% Similarity=0.069 Sum_probs=87.5
Q ss_pred chhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhc------CCceEEeCCCcccCCceEEE
Q 006051 318 GLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLS------NRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 318 G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~------~~~~~~~~~~~~~~gl~~~~ 391 (663)
||+.+...+.-++-.| + ..++||+||||+|||++++++++.. ...++........ .....
T Consensus 1 g~~~~~~~L~~~i~~~-----------~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~--~~id~ 66 (305)
T 2gno_A 1 GAKDQLETLKRIIEKS-----------E-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGEN--IGIDD 66 (305)
T ss_dssp ---CHHHHHHHHHHTC-----------S-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSC--BCHHH
T ss_pred ChHHHHHHHHHHHHCC-----------C-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCC--CCHHH
Confidence 5677777777777654 1 3689999999999999999999842 1122222110000 00000
Q ss_pred eecCchhHhhhhhhh-hccCCeeecccccccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCc
Q 006051 392 VKDGGEWMLEAGALV-LADGGLCCIDEFDSMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLS 470 (663)
Q Consensus 392 ~~~~~~~~~~~g~l~-~a~~gvl~iDEid~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~ 470 (663)
+ .+....+.... .+...|++|||++.|+.+.+++|+..||+. +..+.+|.+||..
T Consensus 67 i---r~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep-------------~~~t~fIl~t~~~-------- 122 (305)
T 2gno_A 67 I---RTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEP-------------PEYAVIVLNTRRW-------- 122 (305)
T ss_dssp H---HHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSC-------------CTTEEEEEEESCG--------
T ss_pred H---HHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCC-------------CCCeEEEEEECCh--------
Confidence 0 11110111111 134569999999999999999999999963 3455666666543
Q ss_pred cccccCCChhhhhhhhhhhhhcCCCChhHHHHHHHH
Q 006051 471 LSVNTTLSGPLLSRFDIVLVLLDTKNPEWDAVVSSH 506 (663)
Q Consensus 471 ~~~~~~l~~aLl~RFdli~~l~d~~~~~~d~~i~~~ 506 (663)
..+.+++.|| ++.+...+.++....+...
T Consensus 123 ----~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~ 151 (305)
T 2gno_A 123 ----HYLLPTIKSR---VFRVVVNVPKEFRDLVKEK 151 (305)
T ss_dssp ----GGSCHHHHTT---SEEEECCCCHHHHHHHHHH
T ss_pred ----HhChHHHHce---eEeCCCCCHHHHHHHHHHH
Confidence 2577899999 7777777776665555433
No 90
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.71 E-value=1.2e-08 Score=119.03 Aligned_cols=158 Identities=18% Similarity=0.120 Sum_probs=91.2
Q ss_pred ccccCchhHHHHHHHHHHhCCce-eecCCCCccccccccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEE
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQ-HVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTA 391 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~-~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~ 391 (663)
..+|.|++.+|+.+.-.+..... ........++.+.++||+||||||||+++++++...+..++..........
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~----- 277 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK----- 277 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS-----
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh-----
Confidence 34688988666555443322100 011112234556789999999999999999999998887765432111100
Q ss_pred eecCchhHhhhhhh----hhccCCeeecccccccChh-----------hHHhHHHHHHhceeeeeccCceeecCCcEEEE
Q 006051 392 VKDGGEWMLEAGAL----VLADGGLCCIDEFDSMREH-----------DRATIHEAMEQQTISVAKAGLVTTLSTRTIIF 456 (663)
Q Consensus 392 ~~~~~~~~~~~g~l----~~a~~gvl~iDEid~l~~~-----------~~~~L~~~me~~~i~i~k~g~~~~~~~~~~ii 456 (663)
..++.....+.+ ....++++||||++.+.+. ....|++.|+... -...+.++
T Consensus 278 --~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~-----------~~~~v~vI 344 (806)
T 1ypw_A 278 --LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-----------QRAHVIVM 344 (806)
T ss_dssp --STTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSC-----------TTSCCEEE
T ss_pred --hhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhc-----------ccccEEEe
Confidence 012211111111 1235689999999887532 3345666665322 12567899
Q ss_pred EeeCCCCCCCCCCccccccCCChhhhh--hhhhhhhhcCCCChhHHH
Q 006051 457 GATNPKGHYDPNLSLSVNTTLSGPLLS--RFDIVLVLLDTKNPEWDA 501 (663)
Q Consensus 457 aatN~~g~~d~~~~~~~~~~l~~aLl~--RFdli~~l~d~~~~~~d~ 501 (663)
+|||+....| +++.+ ||+..+.+. .++.+.+.
T Consensus 345 ~atn~~~~ld------------~al~r~gRf~~~i~i~-~p~~~~r~ 378 (806)
T 1ypw_A 345 AATNRPNSID------------PALRRFGRFDREVDIG-IPDATGRL 378 (806)
T ss_dssp EECSCTTTSC------------TTTTSTTSSCEEECCC-CCCHHHHH
T ss_pred cccCCchhcC------------HHHhcccccccccccC-CCCHHHHH
Confidence 9999874444 35655 888776663 34433333
No 91
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.47 E-value=3.6e-06 Score=108.48 Aligned_cols=190 Identities=20% Similarity=0.269 Sum_probs=118.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
.+..+.||+|||||.+++.+|+.+++.++...+.. +++...+ |. +-.|.. ..|+.+|+|||++++.+..+
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~---~~d~~~~---g~--i~~G~~--~~GaW~cfDEfNrl~~~vLS 674 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDE---GFDLQAM---SR--IFVGLC--QCGAWGCFDEFNRLEERILS 674 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSS---CCCHHHH---HH--HHHHHH--HHTCEEEEETTTSSCHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCC---CCCHHHH---HH--HHhhHh--hcCcEEEehhhhcCCHHHHH
Confidence 45578899999999999999999999988766532 2221100 11 113322 35889999999999999888
Q ss_pred hHHHHHH-------hceeeeecc-CceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhhhhhhhcCCCChhH
Q 006051 428 TIHEAME-------QQTISVAKA-GLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFDIVLVLLDTKNPEW 499 (663)
Q Consensus 428 ~L~~~me-------~~~i~i~k~-g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFdli~~l~d~~~~~~ 499 (663)
.+.+.+. ++.-.+.-. |....++..+.+++|+||. +.....||.+|.+||--+ .+ ..|+.+.
T Consensus 675 vv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpg--------Y~gr~eLP~nLk~lFr~v-~m-~~Pd~~~ 744 (3245)
T 3vkg_A 675 AVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPG--------YAGRSNLPDNLKKLFRSM-AM-IKPDREM 744 (3245)
T ss_dssp HHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCC--------GGGCCCSCHHHHTTEEEE-EC-CSCCHHH
T ss_pred HHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCC--------ccCcccChHHHHhhcEEE-EE-eCCCHHH
Confidence 7766554 333233333 6677888999999999994 112247999999999553 23 2333221
Q ss_pred HHHHHHHHhhhcCCCCCCCCCCCCCCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhccc-CCCccccHhHHH
Q 006051 500 DAVVSSHILAEGGLSEEKDTEPLTDIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSAT-QNAARTTVRMLE 578 (663)
Q Consensus 500 d~~i~~~il~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~-~~~~~~t~R~Le 578 (663)
+.+.+-++.. + .-.+.....+...|...+..-+ ..+.-..+|.+.
T Consensus 745 -------------------------------i~ei~L~s~G-f--~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalK 790 (3245)
T 3vkg_A 745 -------------------------------IAQVMLYSQG-F--KTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALK 790 (3245)
T ss_dssp -------------------------------HHHHHHHTTT-C--SCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHH
T ss_pred -------------------------------HHHHHHHHcc-c--chHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHH
Confidence 1222222110 0 1113344566666766665332 234456799999
Q ss_pred HHHHHHHHHHhcc
Q 006051 579 SLIRLAQAHARLM 591 (663)
Q Consensus 579 ~lirla~a~A~l~ 591 (663)
++++.|-+.-|-.
T Consensus 791 sVL~~AG~lkr~~ 803 (3245)
T 3vkg_A 791 SVLVSAGGIKRKC 803 (3245)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhh
Confidence 9999887765533
No 92
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.35 E-value=3.3e-06 Score=90.56 Aligned_cols=57 Identities=16% Similarity=0.133 Sum_probs=35.0
Q ss_pred ccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHHHHH
Q 006051 545 ILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITAILC 607 (663)
Q Consensus 545 ~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~Ai~l 607 (663)
.+++++.+.+.++.. .. .+..+++|.+..+++.+...|....+..++.+|+..|+.-
T Consensus 236 ~~~~~~~~~i~~~~~---~~---~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 236 VWEPRHLELISDVYG---ED---KGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp SCCHHHHHHHHHHHC---GG---GTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH---Hh---ccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 466666666555421 00 0011567888888887777776666777888888776643
No 93
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.20 E-value=2.7e-06 Score=77.83 Aligned_cols=101 Identities=11% Similarity=0.185 Sum_probs=62.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC-c--eEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR-S--VITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREH 424 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~-~--~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~ 424 (663)
..++|+||+|+|||+|+++++..... + +...... .+. .. . ...+..+++|||++.+...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~----~~~-------~~------~-~~~~~~lLilDE~~~~~~~ 98 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA----SMP-------LT------D-AAFEAEYLAVDQVEKLGNE 98 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT----TSC-------CC------G-GGGGCSEEEEESTTCCCSH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH----Hhh-------HH------H-HHhCCCEEEEeCccccChH
Confidence 57999999999999999999987532 1 1111000 000 00 1 1345689999999999887
Q ss_pred hHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCC-CCCCCCCCccccccCCChhhhhhhhh
Q 006051 425 DRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNP-KGHYDPNLSLSVNTTLSGPLLSRFDI 487 (663)
Q Consensus 425 ~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~-~g~~d~~~~~~~~~~l~~aLl~RFdl 487 (663)
.+..+.+.++...- .| ...+|.|+|. +..+. .. +.|.+|+.-
T Consensus 99 ~~~~l~~li~~~~~----~g-------~~~iiits~~~p~~l~---------~~-~~L~SRl~~ 141 (149)
T 2kjq_A 99 EQALLFSIFNRFRN----SG-------KGFLLLGSEYTPQQLV---------IR-EDLRTRMAY 141 (149)
T ss_dssp HHHHHHHHHHHHHH----HT-------CCEEEEEESSCTTTSS---------CC-HHHHHHGGG
T ss_pred HHHHHHHHHHHHHH----cC-------CcEEEEECCCCHHHcc---------cc-HHHHHHHhc
Confidence 78888888765321 01 1125556663 33322 22 789999853
No 94
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.10 E-value=1.4e-06 Score=82.26 Aligned_cols=99 Identities=16% Similarity=0.102 Sum_probs=55.9
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC----CceEEeCCCcccCCceEEEeecC-chhHhhhhhhhhccCCeeeccccc--
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN----RSVITTGLGSTSAGLTVTAVKDG-GEWMLEAGALVLADGGLCCIDEFD-- 419 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~----~~~~~~~~~~~~~gl~~~~~~~~-~~~~~~~g~l~~a~~gvl~iDEid-- 419 (663)
..+++|+||||||||+|+++++.... ..++...... +. ..+... .......-.-...+..+++|||++
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKD----LI-FRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHH----HH-HHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHH----HH-HHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC
Confidence 36799999999999999999998652 1111100000 00 000000 000000000113467899999998
Q ss_pred ccChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 420 SMREHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 420 ~l~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
.+++..+..+++.++... .....+|.+||..
T Consensus 113 ~~~~~~~~~l~~ll~~~~------------~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 113 RLSDWQRELISYIITYRY------------NNLKSTIITTNYS 143 (180)
T ss_dssp CCCHHHHHHHHHHHHHHH------------HTTCEEEEECCCC
T ss_pred cCCHHHHHHHHHHHHHHH------------HcCCCEEEEcCCC
Confidence 466777778888776532 1223678888875
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.02 E-value=5.4e-06 Score=79.03 Aligned_cols=112 Identities=24% Similarity=0.220 Sum_probs=60.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhh-H
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHD-R 426 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~-~ 426 (663)
.++|++||||||||+++.++++.....+..... + ....| +. .+.+.-+++|||++....+. .
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fan--s----------~s~f~-l~----~l~~~kIiiLDEad~~~~~~~d 121 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVN--S----------TSHFW-LE----PLTDTKVAMLDDATTTCWTYFD 121 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCC--S----------SSCGG-GG----GGTTCSSEEEEEECHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEe--c----------cchhh-hc----ccCCCCEEEEECCCchhHHHHH
Confidence 469999999999999999999876432221100 0 00111 11 22345699999998532111 2
Q ss_pred HhHHHHHHhceeeee-ccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhhh
Q 006051 427 ATIHEAMEQQTISVA-KAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRFD 486 (663)
Q Consensus 427 ~~L~~~me~~~i~i~-k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RFd 486 (663)
..+..+|+...+++. |.......+ ...+|.|||..-..+ ..-.+|.||+-
T Consensus 122 ~~lrn~ldG~~~~iD~Khr~~~~~~-~~PlIITtN~~~~~~---------~~~~~L~SRi~ 172 (212)
T 1tue_A 122 TYMRNALDGNPISIDRKHKPLIQLK-CPPILLTTNIHPAKD---------NRWPYLESRIT 172 (212)
T ss_dssp HHCHHHHHTCCEEEC----CCEEEC-CCCEEEEESSCTTSS---------SSCHHHHTSCE
T ss_pred HHHHHHhCCCcccHHHhhcCccccC-CCCEEEecCCCcccc---------cchhhhhhhEE
Confidence 345556665554442 111111112 226788899641111 11257888875
No 96
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.75 E-value=7e-06 Score=78.89 Aligned_cols=24 Identities=33% Similarity=0.348 Sum_probs=22.3
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+++|+||||||||++++++++.+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999999865
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.55 E-value=8.5e-06 Score=84.02 Aligned_cols=25 Identities=40% Similarity=0.433 Sum_probs=22.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.+++|+||||||||.||+++++.+.
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999998654
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.54 E-value=0.00014 Score=69.70 Aligned_cols=121 Identities=15% Similarity=0.078 Sum_probs=65.2
Q ss_pred cccccccCCCchHHHHHHHHHHh--------cC-CceEEeCCCcccCCceEE-E-------eecC----chhHhhhhhhh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL--------SN-RSVITTGLGSTSAGLTVT-A-------VKDG----GEWMLEAGALV 406 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~--------~~-~~~~~~~~~~~~~gl~~~-~-------~~~~----~~~~~~~g~l~ 406 (663)
...|++|+||||||+++...... .+ ++++.++......+.... . ..+. ..|.. -....
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~-~~~~~ 84 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYE-WIKKP 84 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHH-HTTSG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHH-Hhhcc
Confidence 35789999999999998775433 23 667655533221111100 0 0000 11110 00001
Q ss_pred hccCCeeecccccccCh---hhH--HhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhh
Q 006051 407 LADGGLCCIDEFDSMRE---HDR--ATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPL 481 (663)
Q Consensus 407 ~a~~gvl~iDEid~l~~---~~~--~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aL 481 (663)
...+.|++|||++.+-+ +.. ..++..++... .....+|.++++.. .+..++
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r------------~~~~~iil~tq~~~------------~l~~~l 140 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR------------HQGIDIFVLTQGPK------------LLDQNL 140 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT------------TTTCEEEEEESCGG------------GBCHHH
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcC------------cCCeEEEEECCCHH------------HHhHHH
Confidence 22388999999999822 111 12344444321 12336777777752 455679
Q ss_pred hhhhhhhhhhcC
Q 006051 482 LSRFDIVLVLLD 493 (663)
Q Consensus 482 l~RFdli~~l~d 493 (663)
++|++..+.+..
T Consensus 141 r~ri~~~~~l~~ 152 (199)
T 2r2a_A 141 RTLVRKHYHIAS 152 (199)
T ss_dssp HTTEEEEEEEEE
T ss_pred HHHhheEEEEcC
Confidence 999998887754
No 99
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.44 E-value=0.00018 Score=71.73 Aligned_cols=96 Identities=11% Similarity=0.046 Sum_probs=52.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeCCCcccCCceEEEeecCchhHhhhhhhhhccCCeeecccccccChhhHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTGLGSTSAGLTVTAVKDGGEWMLEAGALVLADGGLCCIDEFDSMREHDRA 427 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~~a~~gvl~iDEid~l~~~~~~ 427 (663)
.+++|+||||||||.+++++++..+.. ..-..+ . ..+.+. .+.+.-+++.||....+ +...
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~l~--G~vn~~-----------~-~~f~l~----~~~~k~i~l~Ee~~~~~-d~~~ 165 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVPFY--GCVNWT-----------N-ENFPFN----DCVDKMVIWWEEGKMTA-KVVE 165 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCE--EECCTT-----------C-SSCTTG----GGSSCSEEEECSCCEET-TTHH
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhccc--ceeecc-----------c-cccccc----cccccEEEEeccccchh-HHHH
Confidence 469999999999999999999865431 110000 0 011111 11334456666665544 5566
Q ss_pred hHHHHHHhceeeeeccCceeecCCcEEEEEeeCCC
Q 006051 428 TIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPK 462 (663)
Q Consensus 428 ~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~ 462 (663)
.+..+++-+.+.+.........-.++.+|.+||..
T Consensus 166 ~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~ 200 (267)
T 1u0j_A 166 SAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTN 200 (267)
T ss_dssp HHHHHHTTCCEEC------CCEECCCCEEEEESSC
T ss_pred HHHHHhCCCcEEEecCcCCcccccCCCEEEEecCC
Confidence 78888876666553221111112344678888863
No 100
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.19 E-value=0.00038 Score=65.40 Aligned_cols=24 Identities=25% Similarity=0.613 Sum_probs=21.7
Q ss_pred ccccccCCCchHHHHHHHHHHhcC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
++.|+||+|+|||+|++.++.+.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999998765
No 101
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.06 E-value=0.0023 Score=66.67 Aligned_cols=79 Identities=9% Similarity=-0.021 Sum_probs=49.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcC-C---ceEEeCCCcccCCceEEEeecCchhHhhhhhhh-hccCCeeecccccc-c
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN-R---SVITTGLGSTSAGLTVTAVKDGGEWMLEAGALV-LADGGLCCIDEFDS-M 421 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~-~---~~~~~~~~~~~~gl~~~~~~~~~~~~~~~g~l~-~a~~gvl~iDEid~-l 421 (663)
...||+||+|+||++.++.+++... . ......... . .+..+..-.+.... .++.-|++|||.+. +
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~------~~~~~l~~~~~~~plf~~~kvvii~~~~~kl 89 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP---N------TDWNAIFSLCQAMSLFASRQTLLLLLPENGP 89 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT---T------CCHHHHHHHHHHHHHCCSCEEEEEECCSSCC
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC---C------CCHHHHHHHhcCcCCccCCeEEEEECCCCCC
Confidence 5688999999999999999887432 1 111110000 0 00011111111111 24567999999999 9
Q ss_pred ChhhHHhHHHHHHh
Q 006051 422 REHDRATIHEAMEQ 435 (663)
Q Consensus 422 ~~~~~~~L~~~me~ 435 (663)
+.+.+++|+..+|+
T Consensus 90 ~~~~~~aLl~~le~ 103 (343)
T 1jr3_D 90 NAAINEQLLTLTGL 103 (343)
T ss_dssp CTTHHHHHHHHHTT
T ss_pred ChHHHHHHHHHHhc
Confidence 99999999999986
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.03 E-value=0.00056 Score=64.64 Aligned_cols=27 Identities=11% Similarity=0.106 Sum_probs=21.2
Q ss_pred CCeeecccccccChhhHHhHHHHHHhc
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAMEQQ 436 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me~~ 436 (663)
..+++|||+..++++....|...++++
T Consensus 77 ~dvviIDE~Q~~~~~~~~~l~~l~~~~ 103 (184)
T 2orw_A 77 TRGVFIDEVQFFNPSLFEVVKDLLDRG 103 (184)
T ss_dssp EEEEEECCGGGSCTTHHHHHHHHHHTT
T ss_pred CCEEEEECcccCCHHHHHHHHHHHHCC
Confidence 459999999999877777777676653
No 103
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.56 E-value=0.0022 Score=65.43 Aligned_cols=23 Identities=13% Similarity=0.369 Sum_probs=20.3
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..++|+||||+|||+|+..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 34789999999999999999875
No 104
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.30 E-value=0.0021 Score=62.21 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=22.1
Q ss_pred ccccccccccCCCchHHHHHHHHHHh
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
||..+|++.|+||+|||+++-.++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHH
Confidence 56689999999999999997777753
No 105
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.01 E-value=0.02 Score=59.21 Aligned_cols=44 Identities=23% Similarity=0.153 Sum_probs=32.9
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcCC
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
+.++|.+.....+.- + .. ..++++||+|+|||+|++.+++....
T Consensus 13 ~~~~gR~~el~~L~~-l-~~--------------~~v~i~G~~G~GKT~L~~~~~~~~~~ 56 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-L-RA--------------PITLVLGLRRTGKSSIIKIGINELNL 56 (357)
T ss_dssp GGSCCCHHHHHHHHH-T-CS--------------SEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred HHhcChHHHHHHHHH-h-cC--------------CcEEEECCCCCCHHHHHHHHHHhcCC
Confidence 457888766666555 3 21 37999999999999999999876543
No 106
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.74 E-value=0.0049 Score=57.26 Aligned_cols=30 Identities=17% Similarity=0.321 Sum_probs=26.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++.++.+++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~ 33 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLA 33 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEE
Confidence 458999999999999999999988776653
No 107
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.63 E-value=0.0056 Score=57.29 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=26.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.+|+|+|+||+|||++++.+++..+..++.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~ 35 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYD 35 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 579999999999999999999988776665
No 108
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.61 E-value=0.0062 Score=56.22 Aligned_cols=30 Identities=30% Similarity=0.371 Sum_probs=25.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|.|+|+||+|||++++.++...+..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 468999999999999999999987755443
No 109
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.56 E-value=0.0062 Score=56.02 Aligned_cols=29 Identities=21% Similarity=0.102 Sum_probs=25.2
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.|+|+|+||+|||++++.+++..+..++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~ 31 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIK 31 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeec
Confidence 47899999999999999999987766654
No 110
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.56 E-value=0.0045 Score=57.48 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=25.5
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
+|+|+|+||+|||++++.+++..+.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58999999999999999999987766654
No 111
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=95.53 E-value=0.0055 Score=57.12 Aligned_cols=31 Identities=35% Similarity=0.449 Sum_probs=26.6
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..+|+|+|+||+|||++++.+++..+..++.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~ 41 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYIN 41 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEE
Confidence 4679999999999999999999887766554
No 112
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.53 E-value=0.0063 Score=57.89 Aligned_cols=30 Identities=30% Similarity=0.353 Sum_probs=26.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~ 55 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFID 55 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 579999999999999999999988766654
No 113
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=95.51 E-value=0.0087 Score=64.97 Aligned_cols=86 Identities=15% Similarity=0.194 Sum_probs=47.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC---C-ceEEeCCCcccC-------CceEEEee-----------cCchhHhhhhhh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN---R-SVITTGLGSTSA-------GLTVTAVK-----------DGGEWMLEAGAL 405 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~---~-~~~~~~~~~~~~-------gl~~~~~~-----------~~~~~~~~~g~l 405 (663)
.++++.|+||||||+++..+++.+. . .++........+ +..+..+. +...+. ....-
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~-~~~~~ 124 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFE-QKEVP 124 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEE-ECSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccchhhHHHHhccCcccccccchhc-ccccc
Confidence 3899999999999999998886532 1 232221111100 11110000 000000 00001
Q ss_pred hhccCCeeecccccccChhhHHhHHHHHH
Q 006051 406 VLADGGLCCIDEFDSMREHDRATIHEAME 434 (663)
Q Consensus 406 ~~a~~gvl~iDEid~l~~~~~~~L~~~me 434 (663)
.+....+++|||+..++......|...+.
T Consensus 125 ~~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 125 DLAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp CCSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred cccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 12345799999999999887777777654
No 114
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.49 E-value=0.005 Score=56.68 Aligned_cols=31 Identities=32% Similarity=0.419 Sum_probs=27.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.+|+|+|+||+|||++++.+++.++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999877777653
No 115
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.33 E-value=0.007 Score=56.81 Aligned_cols=30 Identities=27% Similarity=0.490 Sum_probs=26.0
Q ss_pred cccccccCCCchHHHHHHHHHHh-cCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL-SNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~-~~~~~~~ 377 (663)
.+|+|+|+||+|||++++.+++. .+.+++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id 41 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLE 41 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEee
Confidence 57999999999999999999998 5655554
No 116
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.19 E-value=0.046 Score=54.36 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.8
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-.++++||+|+|||++++.++...
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhC
Confidence 569999999999999999999864
No 117
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.16 E-value=0.0075 Score=56.39 Aligned_cols=29 Identities=34% Similarity=0.455 Sum_probs=25.6
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.|+|+|+||+|||++++.+++..+.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLD 32 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 58999999999999999999987766665
No 118
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.10 E-value=0.0087 Score=57.55 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=25.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
+|+|+|+||+|||++++.+++..+..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999998777666553
No 119
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.10 E-value=0.0081 Score=58.03 Aligned_cols=30 Identities=20% Similarity=0.355 Sum_probs=26.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 34 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLA 34 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 679999999999999999999987765554
No 120
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.04 E-value=0.022 Score=57.56 Aligned_cols=27 Identities=26% Similarity=0.442 Sum_probs=23.4
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
+..++|.|+||+|||++++.+++..+.
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~~~ 59 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEETQG 59 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 357999999999999999999987653
No 121
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.00 E-value=0.0089 Score=54.90 Aligned_cols=28 Identities=43% Similarity=0.689 Sum_probs=23.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.|+|+|+||+|||++++.+ +..+..++.
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~ 30 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIV 30 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEE
Confidence 5889999999999999999 666665554
No 122
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.99 E-value=0.019 Score=56.82 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=24.0
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
+..++|+|+||+|||++++.+++..+.
T Consensus 32 ~~~i~l~G~~GsGKSTla~~L~~~l~~ 58 (253)
T 2p5t_B 32 PIAILLGGQSGAGKTTIHRIKQKEFQG 58 (253)
T ss_dssp CEEEEEESCGGGTTHHHHHHHHHHTTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 367999999999999999999998764
No 123
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=94.99 E-value=0.011 Score=55.59 Aligned_cols=27 Identities=41% Similarity=0.597 Sum_probs=22.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~ 374 (663)
..+.|+|+||+|||++++.++.....+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g 36 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVP 36 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 568999999999999999999874433
No 124
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.99 E-value=0.017 Score=65.07 Aligned_cols=37 Identities=27% Similarity=0.318 Sum_probs=27.5
Q ss_pred hhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHh
Q 006051 319 LFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 319 ~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+.-+.|+..++-+ ..+++.|+||||||+++.++...
T Consensus 151 ~~~Q~~Ai~~~l~~---------------~~~vi~G~pGTGKTt~l~~ll~~ 187 (608)
T 1w36_D 151 INWQKVAAAVALTR---------------RISVISGGPGTGKTTTVAKLLAA 187 (608)
T ss_dssp CCHHHHHHHHHHTB---------------SEEEEECCTTSTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcC---------------CCEEEEeCCCCCHHHHHHHHHHH
Confidence 34556677666633 46999999999999988776643
No 125
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.97 E-value=0.011 Score=55.37 Aligned_cols=30 Identities=20% Similarity=0.379 Sum_probs=25.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 568999999999999999999876655543
No 126
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.92 E-value=0.082 Score=55.07 Aligned_cols=24 Identities=33% Similarity=0.434 Sum_probs=21.5
Q ss_pred ccccccCCCchHHHHHHHHHHhcC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.++++||+|+|||++++++....+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccc
Confidence 699999999999999999987643
No 127
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.92 E-value=0.01 Score=56.34 Aligned_cols=30 Identities=30% Similarity=0.374 Sum_probs=25.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~ 50 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIS 50 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 569999999999999999999877666654
No 128
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.89 E-value=0.0082 Score=56.12 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=25.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 568999999999999999999876655543
No 129
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=94.89 E-value=0.012 Score=58.26 Aligned_cols=30 Identities=20% Similarity=0.247 Sum_probs=25.6
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.++++||||+|||++++.+++..+..++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~ 32 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVAL 32 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEEC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEec
Confidence 378999999999999999999877666653
No 130
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.85 E-value=0.012 Score=55.89 Aligned_cols=30 Identities=23% Similarity=0.356 Sum_probs=25.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 469999999999999999999887655544
No 131
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.84 E-value=0.01 Score=57.00 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.0
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.|+|+|+||+|||++++.+++..+..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478999999999999999988776665543
No 132
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.83 E-value=0.014 Score=53.92 Aligned_cols=29 Identities=24% Similarity=0.324 Sum_probs=24.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~ 376 (663)
..+.|+|+||+|||++++.+++..+..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 46899999999999999999987654444
No 133
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=94.79 E-value=0.013 Score=53.87 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=25.3
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.|+|+|+||+|||++++.+++.++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 58999999999999999999987766654
No 134
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.79 E-value=0.01 Score=56.85 Aligned_cols=30 Identities=37% Similarity=0.428 Sum_probs=25.5
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.|+|.||||+||++.++.+++..+-..+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~ist 31 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIST 31 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcH
Confidence 478999999999999999999877666554
No 135
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.78 E-value=0.011 Score=55.74 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=26.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|.|+|+||+|||++++.+++..+..++.
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 39 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLS 39 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 579999999999999999999877766554
No 136
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.68 E-value=0.012 Score=55.30 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=25.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 568999999999999999999876655544
No 137
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.68 E-value=0.015 Score=55.19 Aligned_cols=29 Identities=21% Similarity=0.357 Sum_probs=24.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~ 376 (663)
..+.|+|++|+|||++++.++...+..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 56889999999999999999987754433
No 138
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.68 E-value=0.012 Score=54.38 Aligned_cols=22 Identities=32% Similarity=0.536 Sum_probs=20.2
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+|.|+||+|||++++.+++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3589999999999999999998
No 139
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=94.59 E-value=0.013 Score=57.72 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=26.9
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
+..|+|.|+||+|||++++.+++..+...+.+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 36799999999999999999998776666553
No 140
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=94.54 E-value=0.017 Score=52.93 Aligned_cols=29 Identities=21% Similarity=0.221 Sum_probs=25.0
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.|+|+|+||+|||++++.+++..+.+++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 30 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYD 30 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 48899999999999999999977766654
No 141
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.51 E-value=0.014 Score=56.92 Aligned_cols=31 Identities=29% Similarity=0.303 Sum_probs=26.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
..|+|+|+||+|||++++.+++..+..++.+
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 5799999999999999999999877655543
No 142
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.49 E-value=0.0037 Score=69.74 Aligned_cols=23 Identities=48% Similarity=0.657 Sum_probs=20.5
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+++.|+||||||+++..+...
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~ 227 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADL 227 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 46899999999999999998874
No 143
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=94.48 E-value=0.011 Score=55.27 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..|+|.|+||+|||++++.+++..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998654
No 144
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=94.47 E-value=0.013 Score=54.47 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=21.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~ 376 (663)
..|+|.|+||+|||++++.+++..+.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999988776665
No 145
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=94.47 E-value=0.015 Score=56.54 Aligned_cols=30 Identities=17% Similarity=0.300 Sum_probs=25.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~ 37 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLS 37 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 569999999999999999999887665554
No 146
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.43 E-value=0.014 Score=56.41 Aligned_cols=33 Identities=15% Similarity=0.283 Sum_probs=26.2
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
+...-|+|+||||+||++.++.+++..+-..+.
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIs 59 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLS 59 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEEC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEc
Confidence 334557889999999999999999987655544
No 147
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.42 E-value=0.085 Score=51.04 Aligned_cols=22 Identities=18% Similarity=0.004 Sum_probs=17.7
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.-++++||||+|||+++..++.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~ 34 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLH 34 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHH
Confidence 3478899999999997766654
No 148
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.41 E-value=0.015 Score=56.27 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=26.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
..|.|+|++|+|||++++.+++..+.+++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~ 36 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDS 36 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4689999999999999999999776655543
No 149
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.39 E-value=0.015 Score=56.11 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=26.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
..|+|+|+||+|||++++.+++..+..++.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 5799999999999999999999877666553
No 150
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.35 E-value=0.014 Score=55.04 Aligned_cols=30 Identities=17% Similarity=0.358 Sum_probs=25.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|.|+|+||+|||++++.+++..+..++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 469999999999999999999987655554
No 151
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.30 E-value=0.015 Score=55.81 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=25.3
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
+|+|.|+||+|||++++.+++..+..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 488999999999999999999776655553
No 152
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.22 E-value=0.016 Score=54.26 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=25.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~ 36 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLS 36 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEee
Confidence 468999999999999999999877665554
No 153
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=94.17 E-value=0.02 Score=54.26 Aligned_cols=30 Identities=23% Similarity=0.327 Sum_probs=25.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|+|+|+||+|||++++.+++..+..++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~ 45 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLS 45 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEe
Confidence 568999999999999999999887765554
No 154
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=94.14 E-value=0.014 Score=56.35 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=24.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVI 376 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~ 376 (663)
..|+|+|+||+|||++++.+++..+..++
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i 34 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHI 34 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 57999999999999999999987765443
No 155
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=94.13 E-value=0.022 Score=56.30 Aligned_cols=31 Identities=26% Similarity=0.337 Sum_probs=27.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
..|.|+|++|+|||++++.+++..+..++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 5799999999999999999999887766653
No 156
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.93 E-value=0.089 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=22.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
-.++++||+|+|||++++.++...+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4699999999999999999998643
No 157
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.85 E-value=0.027 Score=53.59 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...++|+||||+|||++++.+++..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 35789999999999999999998775
No 158
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.82 E-value=0.074 Score=65.82 Aligned_cols=24 Identities=13% Similarity=0.165 Sum_probs=21.0
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..+|++||||||||+||++++...
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~ 1106 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAA 1106 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHh
Confidence 459999999999999999988643
No 159
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=93.74 E-value=0.027 Score=54.59 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=24.9
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.|+|.|+||+|||++++.+++..+..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999998776555543
No 160
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=93.71 E-value=0.03 Score=52.41 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=20.7
Q ss_pred ccccccCCCchHHHHHHHHHHhcC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
-+.|+||+|+|||++++.++....
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478899999999999999987443
No 161
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=93.70 E-value=0.028 Score=53.13 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=23.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCce
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
.|.|.|+||+|||++++.+++..+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~ 28 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEI 28 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcE
Confidence 478999999999999999999776544
No 162
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.69 E-value=0.027 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+||+|+|||+|++.++...+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4588999999999999999998765
No 163
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=93.64 E-value=0.026 Score=55.10 Aligned_cols=31 Identities=23% Similarity=0.222 Sum_probs=26.4
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
+..+.|.||||+|||++++.+++..+..++.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 3679999999999999999999887765554
No 164
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.64 E-value=0.027 Score=53.34 Aligned_cols=25 Identities=16% Similarity=0.364 Sum_probs=22.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+||+|+|||++++.++...+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3578899999999999999999876
No 165
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=93.60 E-value=0.11 Score=50.70 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=20.7
Q ss_pred ccccccCCCchHHHHHHHHHHhcCC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
+++++||+|+|||.++..++.....
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~ 134 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELST 134 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCC
Confidence 4899999999999998877765543
No 166
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=93.60 E-value=0.027 Score=53.45 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=22.1
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..+.|+|++|+|||++++.++...
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999876
No 167
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.60 E-value=0.024 Score=53.05 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.5
Q ss_pred ccccccCCCchHHHHHHHHHHhcC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.|+|.|+||+|||++++.+++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999998654
No 168
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.60 E-value=0.045 Score=56.31 Aligned_cols=45 Identities=20% Similarity=0.136 Sum_probs=35.0
Q ss_pred cccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHHhcC
Q 006051 314 PQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 314 p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+.++|.+.....+.-.+..| ..++++|++|+|||+|++.+++..+
T Consensus 12 ~~~~gR~~el~~L~~~l~~~--------------~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY--------------PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC--------------SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred HhcCChHHHHHHHHHHHhcC--------------CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 35788887766666555432 4799999999999999999988764
No 169
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.48 E-value=0.028 Score=55.23 Aligned_cols=26 Identities=23% Similarity=0.359 Sum_probs=22.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
..+.|+|+||+|||++++.+++..+.
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56999999999999999999976543
No 170
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.40 E-value=0.039 Score=51.60 Aligned_cols=29 Identities=21% Similarity=0.108 Sum_probs=23.7
Q ss_pred ccccccCCCchHHHHHHHHHHhc---CCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS---NRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~---~~~~~~ 377 (663)
.|.|.|+||+|||++++.+++.. +.+++.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 37899999999999999999865 455544
No 171
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=93.40 E-value=0.029 Score=53.28 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=23.4
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.|.|+|++|+|||++++.+++ .+..++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~ 30 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLD 30 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEE
Confidence 478999999999999999999 5555444
No 172
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=93.38 E-value=0.03 Score=53.10 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=22.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..+.|+|++|+|||++++.++...+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999998763
No 173
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.33 E-value=0.049 Score=51.18 Aligned_cols=28 Identities=32% Similarity=0.369 Sum_probs=23.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCce
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
.+|.|+||+|+|||+|++.+.+..|..+
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 3589999999999999999988776544
No 174
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=93.31 E-value=0.041 Score=51.65 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=22.9
Q ss_pred cccccCCCchHHHHHHHHHHhc---CCceEE
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLS---NRSVIT 377 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~---~~~~~~ 377 (663)
|.|.|++|+|||++++.+++.+ +.+++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 6789999999999999999876 555543
No 175
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.26 E-value=0.031 Score=53.16 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=23.2
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.+.|+|++|+|||++++.+++ .+..++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 478999999999999999998 4555544
No 176
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.20 E-value=0.032 Score=53.02 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=22.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
..|+|.|+||+|||++++.+++..+.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999986554
No 177
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=93.20 E-value=0.042 Score=50.20 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||.|+|||+|+|.++...|
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4588999999999999999999874
No 178
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.17 E-value=0.046 Score=51.68 Aligned_cols=24 Identities=13% Similarity=0.068 Sum_probs=22.3
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..|.|+|+||+|||++++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTS
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999976
No 179
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.11 E-value=0.035 Score=52.61 Aligned_cols=30 Identities=17% Similarity=0.217 Sum_probs=26.1
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.|.|.|++|+|||++++.+++..+.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 588999999999999999999877766654
No 180
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=93.10 E-value=0.044 Score=54.42 Aligned_cols=29 Identities=48% Similarity=0.661 Sum_probs=24.1
Q ss_pred cccccccCCCchHHHHHHHHHHh---cCCceE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL---SNRSVI 376 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~---~~~~~~ 376 (663)
..|+|+|+||+|||++++.+++. .+..++
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i 36 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVI 36 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence 46899999999999999999986 444444
No 181
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=92.97 E-value=0.062 Score=55.00 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=27.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
..|+|+||+|+|||++++.+++..+..++..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~D 37 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVD 37 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEecc
Confidence 36899999999999999999999887666653
No 182
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=92.87 E-value=0.056 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=21.8
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..|.|+|++|+|||++++.++...
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999875
No 183
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=92.85 E-value=0.041 Score=52.19 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=22.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..+.|+||+|+|||+|++.+....+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5689999999999999999998765
No 184
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=92.84 E-value=0.04 Score=52.55 Aligned_cols=26 Identities=19% Similarity=0.123 Sum_probs=22.7
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+..|.|+|+||+|||++++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36799999999999999999998643
No 185
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=92.83 E-value=0.05 Score=57.13 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=23.8
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~ 374 (663)
...++|+||||+|||++++.++......
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~~~g~ 196 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLELCGGK 196 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCCc
Confidence 3579999999999999999999865443
No 186
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.80 E-value=0.047 Score=53.94 Aligned_cols=31 Identities=23% Similarity=0.326 Sum_probs=26.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
..|.|+||+|+|||++++.+++.++...+..
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~ 58 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDS 58 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCC
Confidence 5689999999999999999998877655543
No 187
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.79 E-value=0.044 Score=52.40 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=22.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.-+.|+||+|+|||++++.++...+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 45889999999999999999988764
No 188
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=92.78 E-value=0.053 Score=51.16 Aligned_cols=29 Identities=21% Similarity=0.310 Sum_probs=24.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|.|+|++|+|||++++.+++. +..++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 57999999999999999999997 555554
No 189
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=92.56 E-value=0.046 Score=51.64 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=26.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
..|.|+|.+|+|||++++.+++..+.+++..
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 4588999999999999999999866666653
No 190
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=92.55 E-value=0.067 Score=54.96 Aligned_cols=32 Identities=34% Similarity=0.362 Sum_probs=27.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
..|+|+||+|+|||+|+..+|+..+..++...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~D 72 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSD 72 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccc
Confidence 46899999999999999999998887666543
No 191
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=92.54 E-value=0.049 Score=50.82 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=22.7
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...|+|+|+||+|||++++.+++.+.
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 36789999999999999999998653
No 192
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=92.48 E-value=0.052 Score=51.65 Aligned_cols=25 Identities=20% Similarity=0.146 Sum_probs=22.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..-+.++|+||+|||++++.+++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568899999999999999999876
No 193
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.41 E-value=0.056 Score=49.08 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.4
Q ss_pred cccccccccccCCCchHHHHHHHHHH
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+...+|+++|++|+|||+|+..+..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34458899999999999999999865
No 194
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=92.41 E-value=0.053 Score=50.71 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=22.0
Q ss_pred ccccccCCCchHHHHHHHHHHhcCC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
-+.|+||+|+|||++++.++.+.+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~ 27 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCc
Confidence 4678999999999999999998763
No 195
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=92.38 E-value=0.053 Score=51.58 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..|.|+|+||+|||++++.+++..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999998654
No 196
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.37 E-value=0.058 Score=55.31 Aligned_cols=85 Identities=8% Similarity=0.017 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHHHHhhcCCch-hhHHHHhhccccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCC
Q 006051 279 DIDIPDDIIMQFKQFWSEFKDTPL-KGRNAILRGICPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPG 357 (663)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~si~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pG 357 (663)
...+|+++++.++.+-....-... .+|--+++.+. -.+|....-..+...+.++. ....+.-+.|.||+|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~v~~~y~pl~rll~-~~~~~~~~l~~~~~~~l~~~--------~~~~p~iigI~GpsG 102 (321)
T 3tqc_A 32 PLTLTESDLDKLQGQIEIVSLKEVTEIYLPLSRLLS-FYVTARQTLQQATYQFLGKP--------EPKVPYIIGIAGSVA 102 (321)
T ss_dssp -CCCCHHHHHHTTTTHHHHCHHHHHHTHHHHHHHHH-HHHHHHHHHHHHHHHHHTCC--------CCCCCEEEEEECCTT
T ss_pred CCCCCHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHH-HhhcchHHHHHHHHHHhccC--------CCCCCEEEEEECCCC
Confidence 456888887766543222110000 01111222111 12444444444555555431 112335688999999
Q ss_pred chHHHHHHHHHHhcC
Q 006051 358 TGKSQFLKFAAKLSN 372 (663)
Q Consensus 358 tGKs~lar~ia~~~~ 372 (663)
+|||++++.++.+..
T Consensus 103 SGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 103 VGKSTTSRVLKALLS 117 (321)
T ss_dssp SSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhc
Confidence 999999999998865
No 197
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.28 E-value=0.062 Score=50.19 Aligned_cols=26 Identities=23% Similarity=0.344 Sum_probs=22.7
Q ss_pred ccccccccccCCCchHHHHHHHHHHh
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+....|+++|++|+|||+|+.++...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44588999999999999999998864
No 198
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.26 E-value=0.15 Score=47.96 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.8
Q ss_pred ccccccCCCchHH-HHHHHHHHh
Q 006051 349 HLLLVGDPGTGKS-QFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs-~lar~ia~~ 370 (663)
=.+++|+.|+||| .|++++.+.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~ 44 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRF 44 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 3677999999999 899988874
No 199
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=92.21 E-value=0.073 Score=52.48 Aligned_cols=27 Identities=19% Similarity=0.198 Sum_probs=24.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRS 374 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~ 374 (663)
..|.|.|+||+|||++++.+++.++.+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 569999999999999999999976654
No 200
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=92.06 E-value=0.068 Score=50.93 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=23.7
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcC
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
....-+.|+||+|+|||+|++.++.+.+
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3335688999999999999999999886
No 201
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=92.05 E-value=0.067 Score=51.26 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=26.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
..|.|+|++|+|||++++.+++..+.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 4689999999999999999999877766664
No 202
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=91.99 E-value=0.072 Score=51.34 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+||+|+|||+|++.++.+.|
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999999875
No 203
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=91.95 E-value=0.055 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.417 Sum_probs=22.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+||+|+|||+|++.++.+.+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5688999999999999999998765
No 204
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=91.84 E-value=0.086 Score=50.52 Aligned_cols=29 Identities=31% Similarity=0.311 Sum_probs=24.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|.|+|++|+|||++++.+++ .+..++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id 33 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVID 33 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEE
Confidence 5689999999999999999998 5555554
No 205
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=91.84 E-value=0.074 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.343 Sum_probs=22.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+||+|+|||+|++.++...+
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 5688999999999999999999876
No 206
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=91.79 E-value=0.054 Score=50.00 Aligned_cols=20 Identities=45% Similarity=0.725 Sum_probs=17.7
Q ss_pred cccccccCCCchHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFA 367 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~i 367 (663)
--+.|+||+|+|||+|++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 45889999999999999973
No 207
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.78 E-value=0.062 Score=67.36 Aligned_cols=28 Identities=11% Similarity=0.101 Sum_probs=23.7
Q ss_pred cccccccccccCCCchHHHHHHHHHHhc
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+....+++|+||||||||+||.+++..+
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4556899999999999999998887643
No 208
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=91.75 E-value=0.057 Score=51.47 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=22.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+|++|+|||++++.++.+.+
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4588999999999999999999865
No 209
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=91.73 E-value=0.071 Score=51.98 Aligned_cols=31 Identities=26% Similarity=0.270 Sum_probs=26.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
..|.|+|++|+|||++++.+++.++.+++..
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 5689999999999999999999777666553
No 210
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=91.70 E-value=0.074 Score=50.38 Aligned_cols=26 Identities=23% Similarity=0.419 Sum_probs=23.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.-+.|+||+|+|||+|++.+.+..+.
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~ 45 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPE 45 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCc
Confidence 46889999999999999999988763
No 211
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.46 E-value=0.082 Score=49.97 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..++|+||+|+|||+|+..+++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 5699999999999999999998765
No 212
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=91.33 E-value=0.082 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.527 Sum_probs=20.1
Q ss_pred cccccccccCCCchHHHHHHHHH
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia 368 (663)
..--+.|+||+|+|||+|++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 33568899999999999999988
No 213
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=91.24 E-value=0.13 Score=52.12 Aligned_cols=30 Identities=20% Similarity=0.337 Sum_probs=25.6
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
-++++||+|+|||+|+..+++..+..++..
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~~~~iis~ 41 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKILPVELISV 41 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhCCCcEEec
Confidence 478899999999999999999887666553
No 214
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=91.23 E-value=0.089 Score=50.58 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.7
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.--+.|+||+|+|||+|++.++...
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568999999999999999999743
No 215
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.18 E-value=0.091 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.442 Sum_probs=22.8
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-.+.|+||+|+|||+|++.++.+.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3578999999999999999999987
No 216
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=91.17 E-value=0.084 Score=50.42 Aligned_cols=25 Identities=20% Similarity=0.127 Sum_probs=22.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..|+|+|+||+|||++++.+++..+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5689999999999999999998654
No 217
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.14 E-value=0.13 Score=48.92 Aligned_cols=23 Identities=13% Similarity=0.079 Sum_probs=20.6
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..-++++|+||+|||++++.++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999999987
No 218
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=91.13 E-value=0.088 Score=50.59 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.4
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..++|+||||+|||+|++.++..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 56889999999999999999854
No 219
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.98 E-value=0.098 Score=50.77 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.2
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..-++|+||||+|||+|++.++..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 356899999999999999999873
No 220
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=90.94 E-value=0.052 Score=56.14 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=24.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCce
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
.+++|+|+||+|||++++.+++..+.++
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 4799999999999999999999876655
No 221
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.90 E-value=0.084 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.474 Sum_probs=21.2
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..|+|.|+||+|||++++.+++..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 358999999999999999999853
No 222
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.87 E-value=0.11 Score=54.33 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=23.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..++++||+|+|||++++.+....+
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 6799999999999999999998765
No 223
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.81 E-value=0.12 Score=53.33 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=25.5
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
-|.+.||+|+|||++++.+++..+..++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 588999999999999999999887555543
No 224
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=90.79 E-value=0.092 Score=47.15 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=20.6
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+|+++|++|+|||+|+..+..-
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 68999999999999999888753
No 225
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=90.73 E-value=0.086 Score=49.65 Aligned_cols=31 Identities=13% Similarity=0.175 Sum_probs=22.6
Q ss_pred CCCccccccccccccCCCchHHHHHHHHHHh
Q 006051 340 SGTKVRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 340 ~~~~~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.|+......+|+++|++|+|||+|++.+...
T Consensus 17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 3444555689999999999999999998864
No 226
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=90.69 E-value=0.12 Score=52.62 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=24.7
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
-|++.||+|+|||+|+..+++..+..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis 33 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVIS 33 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceee
Confidence 47889999999999999999987765544
No 227
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=90.69 E-value=0.086 Score=52.69 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=22.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.++.++||+|+|||+|++.++.+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5789999999999999999998643
No 228
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=90.65 E-value=0.097 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 378999999999999999998763
No 229
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=90.62 E-value=0.098 Score=50.05 Aligned_cols=23 Identities=22% Similarity=0.294 Sum_probs=20.9
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
--+.|+||.|+|||+|++.++.+
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35788999999999999999987
No 230
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.51 E-value=0.095 Score=47.27 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=20.7
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 68999999999999999988753
No 231
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.47 E-value=0.11 Score=49.48 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..+|+++|++|+|||+|+..+....
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999988753
No 232
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=90.41 E-value=0.096 Score=48.47 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...|+++|++|+|||+|++.+..-
T Consensus 7 ~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 7 KCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999998863
No 233
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=90.40 E-value=0.11 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.320 Sum_probs=20.8
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+|+++|++|+|||+|++.+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 68999999999999999998763
No 234
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=90.38 E-value=0.2 Score=41.53 Aligned_cols=29 Identities=38% Similarity=0.938 Sum_probs=20.9
Q ss_pred EEEEEecCCCCeeeecccccccccccCCCCCCCCCCCCCCCC
Q 006051 146 ERTYMCRKCKHMFPVYPELETRNSIVLPSHCPSQRSKPCEGT 187 (663)
Q Consensus 146 ~~~f~C~~C~~~~~~~~~~~~~~~~~~p~~Cp~~~~~~C~~~ 187 (663)
..-|+|.+||+.|. ..+..|..||. |++.
T Consensus 65 v~p~~C~~CG~~F~--------~~~~kPsrCP~-----CkSe 93 (105)
T 2gmg_A 65 IKPAQCRKCGFVFK--------AEINIPSRCPK-----CKSE 93 (105)
T ss_dssp ECCCBBTTTCCBCC--------CCSSCCSSCSS-----SCCC
T ss_pred EECcChhhCcCeec--------ccCCCCCCCcC-----CCCC
Confidence 34689999998761 24567999995 6654
No 235
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.34 E-value=0.17 Score=55.39 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=23.4
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.+++++||+|+|||++++++..+.+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~ 286 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPP 286 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999988753
No 236
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.29 E-value=0.11 Score=48.77 Aligned_cols=23 Identities=35% Similarity=0.749 Sum_probs=20.8
Q ss_pred ccccccCCCchHHHHHHHHHHhc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+.|+||+|+|||++++.++...
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 57899999999999999999865
No 237
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=90.27 E-value=0.11 Score=47.59 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=21.7
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+++|++|+|||+|++.+...
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3478999999999999999988763
No 238
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=90.26 E-value=0.28 Score=51.57 Aligned_cols=30 Identities=33% Similarity=0.433 Sum_probs=25.3
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
-|.+.||+|+|||+|+..+++..+..++..
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred EEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 478899999999999999999887655543
No 239
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=90.22 E-value=0.11 Score=48.87 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.7
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..+.++|++|+|||+|++.+....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 679999999999999999998753
No 240
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.18 E-value=0.12 Score=47.87 Aligned_cols=23 Identities=26% Similarity=0.522 Sum_probs=20.9
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...|+++|++|+|||+|++.+..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999999875
No 241
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=90.15 E-value=0.11 Score=47.04 Aligned_cols=22 Identities=32% Similarity=0.496 Sum_probs=19.8
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+++|+||+|||+|++.+..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 5799999999999999998864
No 242
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.13 E-value=0.085 Score=51.14 Aligned_cols=28 Identities=25% Similarity=0.220 Sum_probs=16.7
Q ss_pred ccccccccccCCCchHHHHHHHHH-HhcC
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAA-KLSN 372 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia-~~~~ 372 (663)
....-+.|+||+|+|||++++.++ ...+
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC----
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 333568899999999999999999 8765
No 243
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=90.11 E-value=0.11 Score=46.58 Aligned_cols=23 Identities=30% Similarity=0.368 Sum_probs=20.7
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 67999999999999999998764
No 244
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=90.07 E-value=0.12 Score=46.58 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=20.4
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+|+++|++|+|||+|++.+..
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6799999999999999999876
No 245
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.00 E-value=0.11 Score=47.07 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.4
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+|+++|++|+|||+|++.+..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 6899999999999999999875
No 246
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=90.00 E-value=0.11 Score=46.92 Aligned_cols=24 Identities=17% Similarity=0.274 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 478999999999999999998754
No 247
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=89.97 E-value=0.12 Score=47.10 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.1
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+++|+||+|||+|++.+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 6899999999999999998874
No 248
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=89.95 E-value=0.1 Score=50.94 Aligned_cols=27 Identities=26% Similarity=0.478 Sum_probs=22.7
Q ss_pred cccccccccCCCchHHHHHHHHHHhcC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..-.+.|+||.|+|||+|++.++.+.+
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 335688999999999999999987654
No 249
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=89.92 E-value=0.12 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.3
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..|+++|++|+|||+|++.+...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999998864
No 250
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=89.88 E-value=0.13 Score=47.72 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=22.1
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...|+++|++|+|||+|+..+....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4789999999999999999988753
No 251
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=89.87 E-value=0.11 Score=47.80 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.9
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..|.|+|+||+|||+|++.+...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999999864
No 252
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=89.85 E-value=0.11 Score=47.28 Aligned_cols=24 Identities=29% Similarity=0.436 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999998753
No 253
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=89.81 E-value=0.12 Score=46.54 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.6
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 378999999999999999998764
No 254
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=89.79 E-value=0.1 Score=55.73 Aligned_cols=29 Identities=28% Similarity=0.354 Sum_probs=23.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhcCCce
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
..-|+|+|+||+|||++++.+++..+..+
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~~~~~~~~ 286 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHLVSAGYVH 286 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHTGGGTCEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhcCcEE
Confidence 35688899999999999999988664433
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=89.79 E-value=0.092 Score=50.85 Aligned_cols=26 Identities=27% Similarity=0.488 Sum_probs=22.0
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.--+.|+||.|+|||+|++.++.+.+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35688999999999999999987654
No 256
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.79 E-value=0.19 Score=56.80 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHH-HHHHH
Q 006051 320 FTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFL-KFAAK 369 (663)
Q Consensus 320 ~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~la-r~ia~ 369 (663)
+.-++|+..+|... .-.|+.||||||||+.+ ..++.
T Consensus 192 ~~Q~~AV~~al~~~--------------~~~lI~GPPGTGKT~ti~~~I~~ 228 (646)
T 4b3f_X 192 TSQKEAVLFALSQK--------------ELAIIHGPPGTGKTTTVVEIILQ 228 (646)
T ss_dssp HHHHHHHHHHHHCS--------------SEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--------------CceEEECCCCCCHHHHHHHHHHH
Confidence 35677888887542 24689999999999854 34443
No 257
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=89.77 E-value=0.12 Score=46.67 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=19.2
Q ss_pred cccccccCCCchHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia 368 (663)
..|+++|+||+|||+|++.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 679999999999999999875
No 258
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=89.76 E-value=0.12 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=21.0
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 47899999999999999999876
No 259
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=89.68 E-value=0.11 Score=48.27 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=20.0
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+++|++|+|||+|++.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999876
No 260
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.68 E-value=0.12 Score=52.01 Aligned_cols=29 Identities=28% Similarity=0.260 Sum_probs=23.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
..|.|+|+||+|||++++.+++ .+..++.
T Consensus 76 ~iI~I~G~~GSGKSTva~~La~-lg~~~id 104 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLKN-LGAYIID 104 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH-HTCEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCcEEe
Confidence 5699999999999999999995 3444444
No 261
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=89.66 E-value=0.13 Score=47.04 Aligned_cols=24 Identities=21% Similarity=0.423 Sum_probs=21.3
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+..-
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGG
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 478999999999999999998753
No 262
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=89.66 E-value=0.14 Score=47.58 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.6
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..+|+++|++|+|||+|++++.....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 47899999999999999998887543
No 263
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=89.64 E-value=0.57 Score=44.00 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=17.9
Q ss_pred CCeeecccccccChhhHHhHHHHHH
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAME 434 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me 434 (663)
-.+++|||+..++++....+.+..+
T Consensus 82 ~dvViIDEaqfl~~~~v~~l~~l~~ 106 (191)
T 1xx6_A 82 TEVIAIDEVQFFDDEIVEIVNKIAE 106 (191)
T ss_dssp CSEEEECSGGGSCTHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999998776555444333
No 264
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=89.60 E-value=0.12 Score=46.56 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.7
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+|+++|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 67999999999999999998753
No 265
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=89.59 E-value=0.14 Score=46.03 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=19.6
Q ss_pred ccccccCCCchHHHHHHHHHHh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+|+++|++|+|||+|++.+..-
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 266
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=89.59 E-value=0.13 Score=47.81 Aligned_cols=27 Identities=33% Similarity=0.394 Sum_probs=23.0
Q ss_pred cccccccccccCCCchHHHHHHHHHHh
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+...+|+++|++|+|||+|++.+..-
T Consensus 19 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 19 SKEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHHcC
Confidence 344589999999999999999998753
No 267
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=89.58 E-value=0.13 Score=50.47 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=23.5
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+.. -.+.|+||+|+|||+|++.++.+.+
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 444 5688999999999999999998754
No 268
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.53 E-value=0.14 Score=49.66 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=19.0
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..-++++||||+|||+++..++.
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 35689999999999999776654
No 269
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=89.52 E-value=0.079 Score=50.44 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.7
Q ss_pred cccccCCCchHHHHHHHHHHhcC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
|.|.|++|+|||++++.+++..+
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999998764
No 270
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=89.51 E-value=0.13 Score=46.69 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=20.5
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+.++|+||+|||+|++.+...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 56899999999999999998753
No 271
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=89.47 E-value=0.14 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.327 Sum_probs=20.9
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...|+++|++|+|||+|++.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999999875
No 272
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=89.43 E-value=0.15 Score=50.04 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.-+-|.||+|+|||++++.++...+.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhch
Confidence 56889999999999999999997643
No 273
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=89.38 E-value=0.14 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=21.8
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+++|++|+|||+|+..+..-
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 3478999999999999999998753
No 274
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=89.33 E-value=0.13 Score=48.04 Aligned_cols=24 Identities=33% Similarity=0.564 Sum_probs=21.8
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..+.|+|++|+|||+|++.+....
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 679999999999999999998754
No 275
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=89.28 E-value=0.14 Score=47.38 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=21.2
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999999886
No 276
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=89.28 E-value=0.16 Score=49.37 Aligned_cols=25 Identities=16% Similarity=0.258 Sum_probs=22.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-|.|.|+||+|||++++.+++..+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5689999999999999999998765
No 277
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=89.25 E-value=0.12 Score=49.65 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||.|+|||+|++.++.+.+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4688999999999999999987654
No 278
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.24 E-value=0.13 Score=49.83 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=24.9
Q ss_pred ccccccCCCchHHHHHHHHHHhcCCceEEe
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSNRSVITT 378 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~~~~~~~ 378 (663)
.+-|.|+||+|||++++.+++..+.+.+.+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 466899999999999999999877666553
No 279
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.21 E-value=0.15 Score=47.26 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.3
Q ss_pred ccccccccccCCCchHHHHHHHHHH
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.....|+++|++|+|||+|++.+..
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3458999999999999999977665
No 280
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=89.15 E-value=0.087 Score=56.19 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=18.6
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.-.++.|+||+|||+++..++..
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~ 184 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF 184 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc
Confidence 34688999999999999877653
No 281
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=89.11 E-value=0.11 Score=50.93 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=23.0
Q ss_pred cccccccccCCCchHHHHHHHHHHhcC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..--+.|+||+|+|||+|++.++.+.+
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 335688999999999999999998753
No 282
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=89.05 E-value=0.81 Score=46.38 Aligned_cols=26 Identities=31% Similarity=0.294 Sum_probs=22.1
Q ss_pred cccccccccCCCchHHHHHHHHHHhc
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+.-++++|++|+|||+++..++...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l 128 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMF 128 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHH
Confidence 34568999999999999999998754
No 283
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.03 E-value=0.17 Score=47.94 Aligned_cols=24 Identities=17% Similarity=0.102 Sum_probs=21.6
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-+.++|++|+|||++++.++...
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~ 46 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTL 46 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999865
No 284
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=89.02 E-value=0.16 Score=48.06 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=21.2
Q ss_pred cccccccccccCCCchHHHHHHHHHH
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+....|+++|++|+|||+|+..+..
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh
Confidence 34458999999999999999999875
No 285
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.01 E-value=0.15 Score=46.62 Aligned_cols=25 Identities=32% Similarity=0.377 Sum_probs=21.9
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+++|++|+|||+|++.+...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 4578999999999999999998763
No 286
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=89.00 E-value=0.13 Score=51.18 Aligned_cols=25 Identities=32% Similarity=0.616 Sum_probs=21.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||.|+|||+|++.++.+.+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5688999999999999999987654
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=88.98 E-value=0.12 Score=50.83 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=22.4
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-.+.|+||.|+|||+|++.++.+.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 35688999999999999999987654
No 288
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=88.93 E-value=0.13 Score=50.56 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.4
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcC
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...-.+.|+||.|+|||+|++.++.+.+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3345689999999999999999988754
No 289
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=88.92 E-value=0.15 Score=47.02 Aligned_cols=24 Identities=33% Similarity=0.415 Sum_probs=21.3
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|+..+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 378999999999999999998863
No 290
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=88.90 E-value=0.13 Score=51.00 Aligned_cols=28 Identities=21% Similarity=0.426 Sum_probs=23.1
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcC
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...--+.|+||.|+|||+|++.++.+.+
T Consensus 31 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 31 NKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred eCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3335688999999999999999987654
No 291
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=88.87 E-value=0.17 Score=46.82 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.0
Q ss_pred ccccccCCCchHHHHHHHHHHhcC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
-.+|+||.|+|||++++++.-++.
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 357899999999999999998754
No 292
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=88.85 E-value=0.16 Score=46.21 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.6
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999998864
No 293
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.84 E-value=0.2 Score=51.55 Aligned_cols=25 Identities=20% Similarity=0.550 Sum_probs=23.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..++++||+|+|||++++.++.+.+
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5799999999999999999999865
No 294
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=88.74 E-value=0.17 Score=46.57 Aligned_cols=24 Identities=33% Similarity=0.397 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 478999999999999999998853
No 295
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=88.73 E-value=0.14 Score=50.42 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.3
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.--+.|+||+|+|||+|++.++.+.+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35688999999999999999987654
No 296
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=88.72 E-value=0.18 Score=51.44 Aligned_cols=26 Identities=19% Similarity=0.153 Sum_probs=22.9
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..-+.|+||+|+|||+|++.++.+.+
T Consensus 90 g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 90 PFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCchHHHHHHHHHhhcc
Confidence 35688999999999999999998764
No 297
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=88.70 E-value=0.13 Score=49.88 Aligned_cols=26 Identities=23% Similarity=0.356 Sum_probs=22.7
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-.+.|+||.|+|||+|++.++.+.+
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 35688999999999999999998754
No 298
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=88.69 E-value=0.17 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.498 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 25 VFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999998763
No 299
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=88.68 E-value=0.15 Score=46.49 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=20.5
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+|+++|++|+|||+|++.+..
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 7899999999999999999875
No 300
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=88.66 E-value=0.16 Score=46.42 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 378999999999999999998764
No 301
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.66 E-value=0.14 Score=46.79 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.3
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...|+++|++|+|||+|++.+..-
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 378999999999999999998763
No 302
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=88.61 E-value=0.16 Score=46.81 Aligned_cols=24 Identities=33% Similarity=0.405 Sum_probs=21.3
Q ss_pred cccccccccCCCchHHHHHHHHHH
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...+|+++|++|+|||+|++.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CeeEEEEECCCCCCHHHHHHHHhc
Confidence 348899999999999999998875
No 303
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.58 E-value=0.17 Score=47.15 Aligned_cols=23 Identities=26% Similarity=0.434 Sum_probs=21.2
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHc
Confidence 47899999999999999999876
No 304
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=88.57 E-value=0.17 Score=46.91 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=21.4
Q ss_pred cccccccccCCCchHHHHHHHHHH
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...+|+++|++|+|||+|++.+..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 347899999999999999999875
No 305
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=88.51 E-value=0.16 Score=46.97 Aligned_cols=24 Identities=33% Similarity=0.403 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...|+++|++|+|||+|+..+..-
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 378999999999999999999863
No 306
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=88.51 E-value=0.44 Score=48.28 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.7
Q ss_pred cccccccccccCCCchHHHHHHHHHHhc
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...+.-++|+||+|+|||++++.++...
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3445678999999999999999999864
No 307
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=88.48 E-value=0.17 Score=47.23 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.5
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...|+++|+||+|||+|++.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999999886
No 308
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=88.45 E-value=0.17 Score=46.29 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 478999999999999999998763
No 309
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.42 E-value=0.19 Score=46.99 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+..-
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 478999999999999999998763
No 310
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=88.41 E-value=0.19 Score=46.64 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=22.0
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+++|++|+|||+|++.+...
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcC
Confidence 3478999999999999999998764
No 311
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.41 E-value=0.14 Score=50.03 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=22.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.--+.|+||.|+|||+|++.++.+.+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999999987654
No 312
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=88.39 E-value=0.14 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.3
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.--+.|+||.|+|||+|++.++.+.+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 35688999999999999999988654
No 313
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=88.39 E-value=0.15 Score=50.61 Aligned_cols=27 Identities=30% Similarity=0.486 Sum_probs=22.7
Q ss_pred cccccccccCCCchHHHHHHHHHHhcC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..-.+.|+||.|+|||+|++.++.+.+
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 335689999999999999999987643
No 314
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=88.38 E-value=0.16 Score=46.35 Aligned_cols=23 Identities=43% Similarity=0.590 Sum_probs=20.4
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 9 ~~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 9 LFKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999988764
No 315
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=88.38 E-value=0.2 Score=45.86 Aligned_cols=24 Identities=25% Similarity=0.182 Sum_probs=21.2
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+..-
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999988753
No 316
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=88.34 E-value=0.18 Score=46.23 Aligned_cols=24 Identities=25% Similarity=0.268 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHhhC
Confidence 478999999999999999998863
No 317
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=88.32 E-value=0.16 Score=47.13 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=21.2
Q ss_pred cccccccccCCCchHHHHHHHHHH
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
+...|+++|++|+|||+|+..+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 347899999999999999998875
No 318
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=88.31 E-value=0.18 Score=47.04 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.0
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+++|++|+|||+|++.+..-
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcC
Confidence 3478999999999999999998864
No 319
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=88.29 E-value=0.15 Score=50.89 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||.|+|||+|++.++.+.+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5688999999999999999987654
No 320
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.29 E-value=0.22 Score=52.02 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=23.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
..+.|+|++|+|||+|++.++.+.+.
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 56899999999999999999998654
No 321
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=88.27 E-value=0.15 Score=50.63 Aligned_cols=25 Identities=32% Similarity=0.651 Sum_probs=21.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||.|+|||+|++.++.+.+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 4688999999999999999987654
No 322
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=88.22 E-value=0.18 Score=47.31 Aligned_cols=25 Identities=20% Similarity=0.415 Sum_probs=21.8
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+++|++|+|||+|++.+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3478999999999999999998764
No 323
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=88.18 E-value=0.19 Score=47.06 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=21.6
Q ss_pred ccccccccccCCCchHHHHHHHHHHh
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
....+|+++|++|+|||+|++.+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 33478999999999999999998764
No 324
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=88.17 E-value=0.14 Score=50.93 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.--+.|+||.|+|||+|++.++.+.+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 35688999999999999999987654
No 325
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=88.15 E-value=0.13 Score=47.29 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.7
Q ss_pred ccccccccCCCchHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia 368 (663)
..+|+++|++|+|||+|+..+.
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ccEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999998765
No 326
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=88.13 E-value=0.18 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=20.9
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 37899999999999999999874
No 327
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=88.09 E-value=0.21 Score=51.83 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=23.1
Q ss_pred ccccccccccCCCchHHHHHHHHHHhc
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
....-+.|+||||+|||+|++.++...
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334678999999999999999999875
No 328
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=88.07 E-value=0.2 Score=50.42 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.0
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
--++|+|+||+|||+|++.++...
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 468899999999999999998753
No 329
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=88.05 E-value=0.19 Score=46.62 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.1
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...|+++|++|+|||+|++.+..-
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 478999999999999999888753
No 330
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=88.03 E-value=0.19 Score=46.11 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.7
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 37899999999999999998875
No 331
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=88.02 E-value=0.16 Score=50.52 Aligned_cols=27 Identities=37% Similarity=0.608 Sum_probs=22.7
Q ss_pred cccccccccCCCchHHHHHHHHHHhcC
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..--+.|+||.|+|||+|++.++.+.+
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 335688999999999999999987754
No 332
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=88.01 E-value=0.25 Score=51.27 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=20.7
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.-++++||||+|||+|+..++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999998875
No 333
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=88.00 E-value=0.16 Score=50.22 Aligned_cols=25 Identities=28% Similarity=0.469 Sum_probs=21.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||.|+|||+|++.++.+.+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5688999999999999999987654
No 334
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=87.98 E-value=0.18 Score=46.33 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.3
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 478999999999999999998753
No 335
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=87.98 E-value=0.16 Score=50.20 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-.+.|+||.|+|||+|++.++.+.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35688999999999999999998754
No 336
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=87.97 E-value=0.17 Score=46.63 Aligned_cols=22 Identities=18% Similarity=0.386 Sum_probs=19.7
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+|+++|++|+|||+|+..+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998875
No 337
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=87.97 E-value=0.16 Score=51.00 Aligned_cols=25 Identities=24% Similarity=0.421 Sum_probs=22.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||.|+|||+|++.++.+.+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 5688999999999999999998754
No 338
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=87.94 E-value=0.18 Score=46.19 Aligned_cols=23 Identities=17% Similarity=0.252 Sum_probs=20.7
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 47899999999999999998874
No 339
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=87.91 E-value=0.2 Score=46.08 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.9
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+||.|++|+|||+++..+.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 68999999999999999988873
No 340
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=87.91 E-value=0.2 Score=47.71 Aligned_cols=26 Identities=38% Similarity=0.507 Sum_probs=21.6
Q ss_pred ccccccccccCCCchHHHHHHHHHHh
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.....|+++|++|+|||+|++.+..-
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 34589999999999999999988763
No 341
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=87.81 E-value=0.23 Score=45.97 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=21.5
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
....|+++|++|+|||+|+..+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999988754
No 342
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=87.78 E-value=0.19 Score=46.42 Aligned_cols=24 Identities=38% Similarity=0.488 Sum_probs=21.0
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...|+++|++|+|||+|++.+...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999988653
No 343
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=87.78 E-value=0.21 Score=46.32 Aligned_cols=24 Identities=38% Similarity=0.462 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 378999999999999999998764
No 344
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=87.75 E-value=0.19 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=20.8
Q ss_pred cccccccccCCCchHHHHHHHHHH
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
....|+++|++|+|||+|++.+..
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999998753
No 345
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=87.59 E-value=0.18 Score=52.40 Aligned_cols=25 Identities=28% Similarity=0.599 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|+|.++.+.+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4578999999999999999998754
No 346
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=87.58 E-value=0.91 Score=43.33 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=44.5
Q ss_pred cccccCCCchHHH-HHHHHHHhc--CCceEEe--C--------CCcccCCceEEEee--cCchhHhhhhhhhhccCCeee
Q 006051 350 LLLVGDPGTGKSQ-FLKFAAKLS--NRSVITT--G--------LGSTSAGLTVTAVK--DGGEWMLEAGALVLADGGLCC 414 (663)
Q Consensus 350 iLL~G~pGtGKs~-lar~ia~~~--~~~~~~~--~--------~~~~~~gl~~~~~~--~~~~~~~~~g~l~~a~~gvl~ 414 (663)
.+++|+-|+|||+ |++.+.+.. ...++.. . .-.+..|+...+.. ...+.. .....+.-+++
T Consensus 31 ~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~----~~i~~~~dvV~ 106 (219)
T 3e2i_A 31 ECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIM----THDLTNVDVIG 106 (219)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGG----GSCCTTCSEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHH----HHHhcCCCEEE
Confidence 4679999999999 667766542 2222211 1 11122333322211 111110 01112446999
Q ss_pred cccccccChhhHHhHHHHHHhc
Q 006051 415 IDEFDSMREHDRATIHEAMEQQ 436 (663)
Q Consensus 415 iDEid~l~~~~~~~L~~~me~~ 436 (663)
|||+.-++++....+.++.+.+
T Consensus 107 IDEaQFf~~~~v~~l~~la~~g 128 (219)
T 3e2i_A 107 IDEVQFFDDEIVSIVEKLSADG 128 (219)
T ss_dssp ECCGGGSCTHHHHHHHHHHHTT
T ss_pred EechhcCCHHHHHHHHHHHHCC
Confidence 9999999987777776666544
No 347
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=87.51 E-value=0.2 Score=52.09 Aligned_cols=25 Identities=32% Similarity=0.567 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|++.++.+.+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4578899999999999999998754
No 348
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=87.50 E-value=0.2 Score=51.03 Aligned_cols=25 Identities=20% Similarity=0.238 Sum_probs=22.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+|++|+|||++++.++.+.+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4588999999999999999999754
No 349
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=87.49 E-value=0.21 Score=46.69 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.9
Q ss_pred ccccccccccCCCchHHHHHHHHHH
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
....+|+++|++|+|||+|++.+..
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHh
Confidence 4458999999999999999988874
No 350
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=87.47 E-value=0.21 Score=46.34 Aligned_cols=24 Identities=46% Similarity=0.491 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+..-
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 478999999999999999998863
No 351
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=87.47 E-value=0.28 Score=46.53 Aligned_cols=30 Identities=17% Similarity=0.098 Sum_probs=27.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.-|.|.|++|+|||++++.+|+.++.+++.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 458899999999999999999999888875
No 352
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=87.39 E-value=0.21 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|+|.++.+.+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCccHHHHHHHHHcCCC
Confidence 4678999999999999999998754
No 353
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=87.36 E-value=0.23 Score=47.05 Aligned_cols=24 Identities=21% Similarity=0.211 Sum_probs=20.9
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...|+++|++|+|||+|+..+..-
T Consensus 7 ~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 7 QRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 478999999999999999988763
No 354
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.33 E-value=0.25 Score=47.99 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=19.4
Q ss_pred ccccccccccCCCchHHHHHHHHH
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia 368 (663)
....-+++.|+||+|||+++-.++
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~ 51 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHH
Confidence 334578999999999999987654
No 355
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=87.33 E-value=0.21 Score=46.51 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999998764
No 356
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=87.32 E-value=0.21 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.170 Sum_probs=20.9
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..-++|+||||+|||+|++.++..
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 356899999999999999998864
No 357
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=87.22 E-value=0.22 Score=46.32 Aligned_cols=26 Identities=31% Similarity=0.379 Sum_probs=22.6
Q ss_pred cccccccccCCCchHHHHHHHHHHhc
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
....|+++|++|+|||+|++.+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 44789999999999999999988654
No 358
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=87.21 E-value=0.21 Score=46.85 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.1
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999988753
No 359
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.20 E-value=0.24 Score=50.36 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+.-+.|+||+|+|||++++.++.+.
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3568899999999999999999864
No 360
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=87.18 E-value=0.24 Score=46.06 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999998763
No 361
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.17 E-value=0.24 Score=52.75 Aligned_cols=25 Identities=32% Similarity=0.401 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
-.++++||+|+|||++++++....+
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 3589999999999999999998754
No 362
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=87.13 E-value=0.21 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.4
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
--+.|+||.|+|||+|++.++.+.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl~ 70 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGRE 70 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTCT
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999863
No 363
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=87.11 E-value=0.22 Score=46.87 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.3
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999998763
No 364
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=87.07 E-value=0.24 Score=48.82 Aligned_cols=24 Identities=33% Similarity=0.307 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.-.+.|+||.|+|||+|++.++.+
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356889999999999999999986
No 365
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=87.05 E-value=0.19 Score=46.35 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.2
Q ss_pred ccccccCCCchHHHHHHHHHHhcC
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.+.++|++|+|||+|++.+..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 477999999999999999998754
No 366
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=87.01 E-value=0.23 Score=51.63 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|+|.++.+.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHCCCC
Confidence 4578999999999999999998754
No 367
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=86.99 E-value=0.25 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.1
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+++|+||+|||+|+..+..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999998875
No 368
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=86.99 E-value=0.6 Score=48.47 Aligned_cols=28 Identities=29% Similarity=0.335 Sum_probs=23.8
Q ss_pred cccccccccccCCCchHHHHHHHHHHhc
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...+.-++|+||+|+|||++++.++...
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3445678999999999999999999864
No 369
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=86.98 E-value=0.21 Score=48.48 Aligned_cols=25 Identities=28% Similarity=0.333 Sum_probs=21.8
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+|+|++|+|||+|+..+...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 3478999999999999999998763
No 370
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=86.94 E-value=0.19 Score=46.30 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.5
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+++|++|+|||+|++.+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999998753
No 371
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=86.90 E-value=0.28 Score=50.69 Aligned_cols=25 Identities=20% Similarity=0.105 Sum_probs=21.5
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...-++++||||+|||+++..++..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3356899999999999999998875
No 372
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=86.90 E-value=0.41 Score=53.24 Aligned_cols=47 Identities=17% Similarity=0.031 Sum_probs=34.1
Q ss_pred ccccCchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHH
Q 006051 313 CPQVFGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 313 ~p~i~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+.++|.+.....|.-.|..+. .+..-++++|++|+|||+||+.+++
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCeecccHHHHHHHHHHHhccc----------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3457888888777777775420 0124589999999999999998863
No 373
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=86.86 E-value=0.27 Score=45.69 Aligned_cols=25 Identities=24% Similarity=0.302 Sum_probs=21.0
Q ss_pred cccccCCCchHHHHHHHHHHhcCCce
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSNRSV 375 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~~~~ 375 (663)
+|++|++|+|||++|+.++.. +.++
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 689999999999999999866 4443
No 374
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=86.83 E-value=0.38 Score=42.63 Aligned_cols=55 Identities=18% Similarity=0.474 Sum_probs=33.2
Q ss_pred eeEEEEEEEEecCCCCeeeecc---cccc----ccccc-----CCCCCCCCCCCCCCCCceEEecCeeeEee
Q 006051 141 KMYEGERTYMCRKCKHMFPVYP---ELET----RNSIV-----LPSHCPSQRSKPCEGTNFQFVENSIICHD 200 (663)
Q Consensus 141 k~~~~~~~f~C~~C~~~~~~~~---~~~~----~~~~~-----~p~~Cp~~~~~~C~~~~f~~~~~~s~~~d 200 (663)
......+.++|..||+.+.... .+.. ...+. .+..|| .|++..+.+..++..+++
T Consensus 63 ~i~~~p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP-----~Cgs~~~~i~~G~el~I~ 129 (139)
T 3a43_A 63 EFVEEEAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACP-----KCGSHDFEVVKGRGVYVA 129 (139)
T ss_dssp EEEEECCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCS-----SSSCCCEEEEESSCEEEE
T ss_pred EEEecCCcEECCCCCCEEecccccccccccccccccccccccccCCcCc-----cccCCccEEecCCeEEEE
Confidence 3344556899999999876432 0000 01111 167898 499988888777654443
No 375
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=86.81 E-value=0.25 Score=49.79 Aligned_cols=26 Identities=19% Similarity=0.128 Sum_probs=22.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.-|.+.|++|+|||++++.+++..+.
T Consensus 32 ~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 32 LFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 56889999999999999999987653
No 376
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=86.81 E-value=0.21 Score=46.66 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=20.7
Q ss_pred cccccccccCCCchHHHHHHHHHH
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
....|+++|++|+|||+|++++..
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~ 42 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFH 42 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 347899999999999999997765
No 377
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=86.80 E-value=0.25 Score=50.60 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=21.8
Q ss_pred cccccccccCCCchHHHHHHHHHHhc
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...-++++|+||+|||+++..++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 33578999999999999999988653
No 378
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=86.80 E-value=0.27 Score=42.37 Aligned_cols=50 Identities=18% Similarity=0.472 Sum_probs=32.1
Q ss_pred EEEecCceeEEEEEEEEecCCCCeeeecccccccccccCCC-CCCCCCCCCCCCCceEEecCeee
Q 006051 134 VIRSGATKMYEGERTYMCRKCKHMFPVYPELETRNSIVLPS-HCPSQRSKPCEGTNFQFVENSII 197 (663)
Q Consensus 134 V~r~s~vk~~~~~~~f~C~~C~~~~~~~~~~~~~~~~~~p~-~Cp~~~~~~C~~~~f~~~~~~s~ 197 (663)
+..-...........|+|..||+.|... ..+. .||. |++....+..+.-.
T Consensus 59 ~~e~a~L~i~~~p~~~~C~~CG~~~e~~---------~~~~~~CP~-----Cgs~~~~i~~G~el 109 (119)
T 2kdx_A 59 VCKDAILDIVDEKVELECKDCSHVFKPN---------ALDYGVCEK-----CHSKNVIITQGNEM 109 (119)
T ss_dssp TTSSCCEEEEEECCEEECSSSSCEECSC---------CSTTCCCSS-----SSSCCCEEEESSCC
T ss_pred hhcCcEEEEEeccceEEcCCCCCEEeCC---------CCCCCcCcc-----ccCCCcEEecCCeE
Confidence 4333344445556789999999987531 1256 7984 88877666665443
No 379
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=86.78 E-value=0.24 Score=51.51 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|+|.++.+.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCchHHHHHHHHhcCCC
Confidence 4578899999999999999998754
No 380
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=86.76 E-value=0.21 Score=48.34 Aligned_cols=23 Identities=26% Similarity=0.221 Sum_probs=20.3
Q ss_pred cccccCCCchHHHHHHHHHHhcC
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
+.|+||+|+|||+|+++++.+.+
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcccc
Confidence 56789999999999999998754
No 381
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=86.75 E-value=0.24 Score=51.76 Aligned_cols=25 Identities=36% Similarity=0.628 Sum_probs=22.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|+|.++.+.+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHHcCCC
Confidence 4578999999999999999998754
No 382
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=86.75 E-value=0.29 Score=46.28 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=21.7
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
....|+++|++|+|||+|++.+..-
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999988753
No 383
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=86.68 E-value=0.25 Score=51.74 Aligned_cols=25 Identities=36% Similarity=0.654 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|+|.++.+.+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHHcCCC
Confidence 4578999999999999999998754
No 384
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=86.57 E-value=0.15 Score=48.17 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.1
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
....+.|+|++|+|||+|++.+...
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999987643
No 385
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=86.57 E-value=0.21 Score=47.11 Aligned_cols=57 Identities=14% Similarity=0.063 Sum_probs=38.0
Q ss_pred cCCeeeccccccc---ChhhHHhHHHHHHhceeeeeccCceeecCCcEEEEEeeCCCCCCCCCCccccccCCChhhhhhh
Q 006051 409 DGGLCCIDEFDSM---REHDRATIHEAMEQQTISVAKAGLVTTLSTRTIIFGATNPKGHYDPNLSLSVNTTLSGPLLSRF 485 (663)
Q Consensus 409 ~~gvl~iDEid~l---~~~~~~~L~~~me~~~i~i~k~g~~~~~~~~~~iiaatN~~g~~d~~~~~~~~~~l~~aLl~RF 485 (663)
.-.++++||+..+ .--....+++++.++ +.+..+|.|.|.. ++.|++.-
T Consensus 120 ~yDlvILDEi~~al~~g~l~~~ev~~~l~~R-------------p~~~~vIlTGr~a---------------p~~l~e~A 171 (196)
T 1g5t_A 120 LLDMVVLDELTYMVAYDYLPLEEVISALNAR-------------PGHQTVIITGRGC---------------HRDILDLA 171 (196)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHTS-------------CTTCEEEEECSSC---------------CHHHHHHC
T ss_pred CCCEEEEeCCCccccCCCCCHHHHHHHHHhC-------------cCCCEEEEECCCC---------------cHHHHHhC
Confidence 3469999999652 222234577777653 4455788888743 35788888
Q ss_pred hhhhhhcC
Q 006051 486 DIVLVLLD 493 (663)
Q Consensus 486 dli~~l~d 493 (663)
|++-.+..
T Consensus 172 D~VTem~~ 179 (196)
T 1g5t_A 172 DTVSELRP 179 (196)
T ss_dssp SEEEECCC
T ss_pred cceeeecc
Confidence 88877644
No 386
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=86.48 E-value=0.49 Score=48.31 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.3
Q ss_pred ccccccCCCchHHHHHHHHHHhc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-+.|+|+.|+|||++++.+....
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 36789999999999999999864
No 387
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=86.46 E-value=0.25 Score=46.64 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=21.2
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...|+++|++|+|||+|++.+...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 378999999999999999988753
No 388
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=86.42 E-value=0.25 Score=51.66 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=22.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|+|.++.+.+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCcHHHHHHHHHHcCCC
Confidence 4578999999999999999998754
No 389
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=86.42 E-value=0.25 Score=54.54 Aligned_cols=26 Identities=23% Similarity=0.253 Sum_probs=23.0
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...+.|+|++|+|||++++.++....
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 36789999999999999999998754
No 390
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=86.39 E-value=0.25 Score=46.75 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...|+++|++|+|||+|++.+...
T Consensus 28 ~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 28 KCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 378999999999999999998864
No 391
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.35 E-value=0.36 Score=50.00 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=19.8
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.-++++||||+|||+|+..++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999998888753
No 392
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=86.32 E-value=0.21 Score=46.82 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.9
Q ss_pred ccccccccCCCchHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia 368 (663)
...|+++|++|+|||+|++.+.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999875
No 393
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=86.24 E-value=0.25 Score=45.97 Aligned_cols=23 Identities=17% Similarity=0.533 Sum_probs=20.4
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 36899999999999999998864
No 394
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=86.21 E-value=0.24 Score=51.10 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.5
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-+.|+|+||+|||+|++.++...
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 568899999999999999998764
No 395
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=86.15 E-value=0.22 Score=51.67 Aligned_cols=25 Identities=28% Similarity=0.589 Sum_probs=21.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|++.++.+.+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4578899999999999999998754
No 396
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=86.10 E-value=0.19 Score=46.45 Aligned_cols=22 Identities=23% Similarity=0.342 Sum_probs=19.8
Q ss_pred ccccccccCCCchHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia 368 (663)
..+|+++|++|+|||+|+..+.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999998874
No 397
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=86.08 E-value=0.23 Score=50.46 Aligned_cols=29 Identities=34% Similarity=0.531 Sum_probs=24.0
Q ss_pred cccccccccccCCCchHHHHHHHHHHhcC
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
++..-.+.|+||+|+|||+|++.++.+.+
T Consensus 77 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 34446789999999999999999988654
No 398
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.03 E-value=0.3 Score=49.58 Aligned_cols=23 Identities=30% Similarity=0.277 Sum_probs=18.0
Q ss_pred cccccccccccCCCchHHHHHHHHH
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia 368 (663)
.+| + ++++||||+|||+|+-.++
T Consensus 27 ~~G-i-teI~G~pGsGKTtL~Lq~~ 49 (333)
T 3io5_A 27 QSG-L-LILAGPSKSFKSNFGLTMV 49 (333)
T ss_dssp CSE-E-EEEEESSSSSHHHHHHHHH
T ss_pred cCC-e-EEEECCCCCCHHHHHHHHH
Confidence 345 4 8999999999999955544
No 399
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=86.02 E-value=0.26 Score=48.34 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=21.8
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+|+|.||+|||+|+..+...
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCC
Confidence 3588999999999999999988753
No 400
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=85.99 E-value=0.17 Score=46.43 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=10.9
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 37899999999999999988764
No 401
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=85.98 E-value=0.23 Score=50.11 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.5
Q ss_pred ccccccccccCCCchHHHHHHHHHHhcC
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
...-.+.|+||.|+|||+|++.++.+.+
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3345688999999999999999998764
No 402
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=85.91 E-value=0.22 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.0
Q ss_pred cccccccccCCCchHHHHHHHHHHh
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+|+++|++|+|||+|++.+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3478999999999999999887643
No 403
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=85.87 E-value=0.23 Score=46.58 Aligned_cols=22 Identities=23% Similarity=0.484 Sum_probs=19.8
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+++|++|+|||+|++.+..
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 6799999999999999998863
No 404
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.85 E-value=0.45 Score=50.41 Aligned_cols=24 Identities=25% Similarity=0.555 Sum_probs=21.6
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..+.|+|++|+|||+|++.+..+.
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 468899999999999999999864
No 405
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=85.84 E-value=0.27 Score=46.19 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.8
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 47899999999999999998864
No 406
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=85.78 E-value=0.3 Score=49.90 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=21.7
Q ss_pred ccccccccccCCCchHHHHHHHHHHh
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
....-++++|+||+|||+++..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 33457999999999999999988864
No 407
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=85.77 E-value=0.23 Score=49.37 Aligned_cols=24 Identities=25% Similarity=0.582 Sum_probs=21.6
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-.+.|+||.|+|||+|++.++.+.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 568899999999999999999875
No 408
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=85.77 E-value=0.31 Score=50.07 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.1
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+.-+.|+||+|+|||++++.++...
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999999999864
No 409
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=85.75 E-value=0.29 Score=46.10 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.8
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 47899999999999999988875
No 410
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=85.62 E-value=0.42 Score=53.37 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=26.2
Q ss_pred cccccccCCCchHHHHHHHHHHhc---CCceEEe
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS---NRSVITT 378 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~---~~~~~~~ 378 (663)
..|+|+|.||+|||++++.+++.+ +.+++..
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 569999999999999999999976 5556554
No 411
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=85.61 E-value=0.31 Score=51.46 Aligned_cols=24 Identities=38% Similarity=0.284 Sum_probs=20.0
Q ss_pred ccccccccccCCCchHHHHHHHHH
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia 368 (663)
....-++|+||||+|||+|++.++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHH
Confidence 334569999999999999999665
No 412
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=85.55 E-value=0.28 Score=46.60 Aligned_cols=23 Identities=39% Similarity=0.629 Sum_probs=20.7
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 37899999999999999998874
No 413
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.55 E-value=0.79 Score=49.52 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.5
Q ss_pred cccccccccccCCCchHHHHHHHHHHhc
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+....-++|+|++|+|||++++.++.+.
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 3445678999999999999999999864
No 414
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=85.53 E-value=0.29 Score=46.23 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.2
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|+..+..-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 368999999999999999998763
No 415
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=85.48 E-value=0.3 Score=46.30 Aligned_cols=23 Identities=39% Similarity=0.563 Sum_probs=20.9
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHhc
Confidence 47899999999999999998875
No 416
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=85.48 E-value=0.29 Score=45.92 Aligned_cols=24 Identities=33% Similarity=0.469 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+..-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 368999999999999999998863
No 417
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=85.45 E-value=0.3 Score=45.35 Aligned_cols=24 Identities=29% Similarity=0.278 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+..-
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 478999999999999999998864
No 418
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=85.44 E-value=0.29 Score=45.54 Aligned_cols=24 Identities=13% Similarity=0.304 Sum_probs=20.8
Q ss_pred cccccccccCCCchHHHHHHHHHH
Q 006051 346 GESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...+|+++|++|+|||+|+..+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 347899999999999999988764
No 419
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=85.38 E-value=0.22 Score=52.97 Aligned_cols=22 Identities=32% Similarity=0.542 Sum_probs=20.4
Q ss_pred ccccccCCCchHHHHHHHHHHh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~ 370 (663)
++.|+|++|+|||+|++.++..
T Consensus 44 ~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 44 NILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEEECSTTSSSHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999876
No 420
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=85.33 E-value=0.32 Score=52.64 Aligned_cols=25 Identities=24% Similarity=0.385 Sum_probs=22.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...|+|+|.||+|||++++.+++..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3679999999999999999999754
No 421
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=85.33 E-value=0.45 Score=52.59 Aligned_cols=44 Identities=23% Similarity=0.062 Sum_probs=33.1
Q ss_pred CchhHHHHHHHHHHhCCceeecCCCCccccccccccccCCCchHHHHHHHHHH
Q 006051 317 FGLFTVKLAVALTLIGGVQHVDASGTKVRGESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 317 ~G~~~~K~aill~l~~g~~~~~~~~~~~r~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
+|.+..+..|.-.|..+. + ....-|.++|.+|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~---~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------D---LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------T---SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------C---CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 699988888777664420 0 1124588999999999999999995
No 422
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=85.30 E-value=0.31 Score=45.84 Aligned_cols=24 Identities=29% Similarity=0.311 Sum_probs=21.2
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...|+++|++|+|||+|++.+...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 378999999999999999998753
No 423
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=85.23 E-value=0.29 Score=48.66 Aligned_cols=23 Identities=30% Similarity=0.576 Sum_probs=20.7
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+|.|+|+||+|||+|+.++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999998754
No 424
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=85.08 E-value=0.52 Score=53.00 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.3
Q ss_pred ccccccCCCchHHHHHHHHHH
Q 006051 349 HLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~ 369 (663)
..++.||||||||+++..+..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~ 217 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVY 217 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHH
Confidence 578999999999997766554
No 425
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=85.06 E-value=2.1 Score=45.60 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.7
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...|.++|.||+|||+|+.++..
T Consensus 175 ~~ki~lvG~~nvGKSSLin~l~~ 197 (436)
T 2hjg_A 175 VIQFCLIGRPNVGKSSLVNAMLG 197 (436)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHhC
Confidence 47899999999999999998875
No 426
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=85.05 E-value=0.33 Score=46.32 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=20.3
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...|+|+|+||+|||+|+..+..
T Consensus 37 ~~kVvlvG~~~vGKSSLl~r~~~ 59 (211)
T 2g3y_A 37 YYRVVLIGEQGVGKSTLANIFAG 59 (211)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 47899999999999999988763
No 427
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=85.03 E-value=0.35 Score=43.43 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.1
Q ss_pred cccccCCCchHHHHHHHHHHhc
Q 006051 350 LLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 350 iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+++||.|+|||+++.++.-.+
T Consensus 26 ~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998543
No 428
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=85.01 E-value=0.35 Score=44.46 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=20.0
Q ss_pred ccccccCCCchHHHHHHHHHHhc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-+.++|++|+|||+++..++..+
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 47899999999999999988754
No 429
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=85.00 E-value=0.2 Score=49.60 Aligned_cols=26 Identities=23% Similarity=0.442 Sum_probs=23.0
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..-|.|.|++|+|||++++.+++.+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 36789999999999999999998764
No 430
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=84.91 E-value=0.28 Score=49.76 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.9
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+++||+|+|||+|++.+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 5789999999999999999775
No 431
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=84.82 E-value=0.39 Score=44.43 Aligned_cols=24 Identities=29% Similarity=0.272 Sum_probs=20.5
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-+.++|++|+|||++++.+....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 347899999999999999988753
No 432
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=84.76 E-value=0.31 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.425 Sum_probs=20.2
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+|+|+||+|||+|+.++..
T Consensus 6 ~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 6 VKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHC
Confidence 6799999999999999999875
No 433
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=84.65 E-value=0.28 Score=51.60 Aligned_cols=26 Identities=35% Similarity=0.493 Sum_probs=22.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhcC
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.--+.|+||+|+|||+|++.++.+.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~~ 72 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLLN 72 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCSE
T ss_pred CCEEEEECCCCChHHHHHHHHhCCCC
Confidence 35688999999999999999998653
No 434
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=84.53 E-value=0.37 Score=46.05 Aligned_cols=24 Identities=38% Similarity=0.544 Sum_probs=21.4
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|++.+...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 378999999999999999998764
No 435
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=84.46 E-value=0.38 Score=45.98 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=20.9
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..|+++|++|+|||+|+..+....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999888653
No 436
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.35 E-value=0.4 Score=50.47 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=22.6
Q ss_pred ccccccccccCCCchHHHHHHHHHHh
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+.+.|++++|++|+|||++++.+...
T Consensus 33 ~~~~~~~i~G~~G~GKs~~~~~~~~~ 58 (392)
T 4ag6_A 33 RTNSNWTILAKPGAGKSFTAKMLLLR 58 (392)
T ss_dssp BCCCCEEEECCTTSSHHHHHHHHHHH
T ss_pred cccCceEEEcCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998764
No 437
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=84.28 E-value=0.56 Score=48.71 Aligned_cols=24 Identities=13% Similarity=0.138 Sum_probs=20.3
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..-++++|+||+|||+|+..++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 356899999999999999887753
No 438
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=84.23 E-value=0.37 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.7
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-|+|+|.||+|||++++.+++.+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L 59 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYL 59 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999999865
No 439
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=84.21 E-value=0.55 Score=45.63 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..|.+.|.+|+|||++++.+++.++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999874
No 440
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=84.15 E-value=1.8 Score=41.21 Aligned_cols=25 Identities=12% Similarity=0.066 Sum_probs=18.1
Q ss_pred CCeeecccccccChhhHHhHHHHHH
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAME 434 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me 434 (663)
-.+++|||+.-++++....+..+-+
T Consensus 102 ~dvViIDEaQF~~~~~V~~l~~l~~ 126 (214)
T 2j9r_A 102 MDVIAIDEVQFFDGDIVEVVQVLAN 126 (214)
T ss_dssp CCEEEECCGGGSCTTHHHHHHHHHH
T ss_pred CCEEEEECcccCCHHHHHHHHHHhh
Confidence 4699999999998876655444333
No 441
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=84.11 E-value=0.38 Score=46.19 Aligned_cols=23 Identities=30% Similarity=0.748 Sum_probs=20.4
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...|+++|++|+|||+|+..+..
T Consensus 29 ~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 29 KKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp SEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 37899999999999999988764
No 442
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=83.85 E-value=0.38 Score=47.31 Aligned_cols=23 Identities=39% Similarity=0.511 Sum_probs=20.8
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+|+|+||+|||+|+..+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999998875
No 443
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=83.79 E-value=0.57 Score=54.17 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=17.3
Q ss_pred ccccccCCCchHHHHHHHHHH
Q 006051 349 HLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~ 369 (663)
..++.||||||||+++..+..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~ 393 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVY 393 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHH
Confidence 578999999999997766554
No 444
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=83.67 E-value=0.41 Score=49.74 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|+|.++.+.+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEcCCCchHHHHHHHHhcCCC
Confidence 4578999999999999999998754
No 445
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=83.59 E-value=0.22 Score=46.75 Aligned_cols=24 Identities=21% Similarity=0.418 Sum_probs=6.0
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..+|+++|++|+|||+|+..+...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 478999999999999999887654
No 446
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=83.53 E-value=2.4 Score=40.87 Aligned_cols=24 Identities=25% Similarity=0.180 Sum_probs=17.9
Q ss_pred CCeeecccccccChhhHHhHHHHHHh
Q 006051 410 GGLCCIDEFDSMREHDRATIHEAMEQ 435 (663)
Q Consensus 410 ~gvl~iDEid~l~~~~~~~L~~~me~ 435 (663)
-.+++|||+.-+.. ...+.+.+.+
T Consensus 91 ~dvViIDEaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 91 VAVIGIDEGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp CSEEEESSGGGCTT--HHHHHHHHHH
T ss_pred CCEEEEEchhhhhh--HHHHHHHHHh
Confidence 46999999999964 5556666655
No 447
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=83.52 E-value=0.45 Score=51.23 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=21.9
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-++|+||.|+|||+|+|.++.+.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 568999999999999999999875
No 448
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=83.46 E-value=0.48 Score=51.59 Aligned_cols=26 Identities=8% Similarity=-0.082 Sum_probs=23.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
..|.|+|.+|+|||++++++++.+..
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 68999999999999999999998763
No 449
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=83.44 E-value=0.41 Score=45.57 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=21.1
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..++++|++|+|||+|+..++...
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 579999999999999999988653
No 450
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=83.36 E-value=0.47 Score=45.51 Aligned_cols=22 Identities=18% Similarity=0.380 Sum_probs=19.7
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+|+|++|+|||+|+..+..
T Consensus 14 ~KivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 14 FKLVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCcCHHHHHHHHHh
Confidence 6799999999999999988764
No 451
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=83.84 E-value=0.23 Score=46.70 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=20.1
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|++.+..
T Consensus 30 ~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 47899999999999999977753
No 452
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=83.26 E-value=0.43 Score=48.46 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=19.8
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..|+|+|+||+|||+|+..+..
T Consensus 4 ~KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 4 SKLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEEEECCTTSSHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHh
Confidence 6799999999999999998764
No 453
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=83.09 E-value=0.35 Score=51.35 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=21.3
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
..|.|+|++|+|||+|++.+....
T Consensus 32 f~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 32 FTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHhCCC
Confidence 568999999999999999998753
No 454
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=83.09 E-value=0.51 Score=45.50 Aligned_cols=30 Identities=13% Similarity=-0.014 Sum_probs=26.7
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEE
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVIT 377 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~ 377 (663)
.-|.+.|++|+|||++++.+|+.++.+++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 468899999999999999999988877765
No 455
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=83.06 E-value=0.46 Score=48.00 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=21.5
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...++++|++|+|||+++..++...
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578899999999999999998754
No 456
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=83.00 E-value=0.44 Score=47.49 Aligned_cols=23 Identities=22% Similarity=0.638 Sum_probs=20.6
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..|.|+|+||+|||+|+..+...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999753
No 457
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=82.77 E-value=0.5 Score=48.93 Aligned_cols=24 Identities=38% Similarity=0.711 Sum_probs=21.3
Q ss_pred ccccccccCCCchHHHHHHHHHHh
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
...+.|+|+||+|||+|+..+...
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 367899999999999999999874
No 458
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=82.74 E-value=0.38 Score=48.73 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=21.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+||+|+|||+|++.++.+..
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 3578899999999999999987643
No 459
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=82.68 E-value=0.53 Score=45.47 Aligned_cols=23 Identities=30% Similarity=0.579 Sum_probs=21.0
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.-+.|.|+.|+|||++++.++..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 56889999999999999999887
No 460
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=82.62 E-value=0.6 Score=47.55 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=19.4
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
--+++.|+||+|||+++..++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 5589999999999999888874
No 461
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=82.57 E-value=1.7 Score=44.32 Aligned_cols=27 Identities=33% Similarity=0.356 Sum_probs=22.3
Q ss_pred ccccccccccCCCchHHHHHHHHHHhc
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.+..-++++|++|+|||+++..++...
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999988753
No 462
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=82.29 E-value=0.45 Score=46.94 Aligned_cols=22 Identities=32% Similarity=0.682 Sum_probs=19.6
Q ss_pred ccccccCCCchHHHHHHHHHHh
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~ 370 (663)
+|.|+|+||+|||+|+.++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999998754
No 463
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=82.19 E-value=0.24 Score=49.93 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=18.8
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-|.+.|++|+|||++++.+++..+
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3488999999999999999998654
No 464
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=82.13 E-value=4.9 Score=33.86 Aligned_cols=66 Identities=14% Similarity=0.090 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHH
Q 006051 525 IWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITA 604 (663)
Q Consensus 525 ~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~A 604 (663)
.++...+++.+.... ...+|+++.+.|.... -+.++.+.+-|.+.|+=..|++|+.+||..|
T Consensus 7 ~lP~a~I~Ri~r~~g---~~rIS~~a~~~l~e~l---------------~~f~~~v~~da~~~A~HA~RKTV~~eDV~la 68 (111)
T 3b0c_T 7 EIASSLIKQIFSHYV---KTPVTRDAYKIVEKCS---------------ERYFKQISSDLEAYSQHAGRKTVEMADVELL 68 (111)
T ss_dssp ---CHHHHHHHHHHH---CSCBCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred CCCHHHHHHHHHHCC---CCccCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 456667777665543 4578999988888763 3456788888999999889999999999999
Q ss_pred HHHH
Q 006051 605 ILCI 608 (663)
Q Consensus 605 i~l~ 608 (663)
++-.
T Consensus 69 lrr~ 72 (111)
T 3b0c_T 69 MRRQ 72 (111)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 8764
No 465
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=82.09 E-value=0.47 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.8
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.+|.|+|+||+|||+|+.++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 78999999999999999998754
No 466
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=82.02 E-value=0.56 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=21.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-|.|.|++|+|||++++.+++.+.
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999987643
No 467
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=81.95 E-value=0.62 Score=49.82 Aligned_cols=26 Identities=27% Similarity=0.431 Sum_probs=23.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
--+.|+||+|+|||+|++.++.....
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCC
Confidence 46889999999999999999998754
No 468
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=81.94 E-value=0.44 Score=47.43 Aligned_cols=22 Identities=36% Similarity=0.588 Sum_probs=19.6
Q ss_pred ccccccccCCCchHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia 368 (663)
..+|+++|+||+|||+|+..+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHh
Confidence 4789999999999999998764
No 469
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=81.86 E-value=0.52 Score=48.90 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=21.2
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+|++|+|||+|++.+.....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 3578999999999999999986543
No 470
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=81.79 E-value=0.41 Score=45.49 Aligned_cols=23 Identities=17% Similarity=0.398 Sum_probs=20.5
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...|+++|++|+|||+|+..+..
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~ 51 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCN 51 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHhC
Confidence 47899999999999999998765
No 471
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=81.65 E-value=0.61 Score=51.23 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=22.7
Q ss_pred ccccccccccCCCchHHHHHHHHHHhc
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
....-++++|+||+|||+|++.++...
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 334678999999999999999998754
No 472
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=81.61 E-value=0.63 Score=48.13 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.1
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
--+.|+||+|+|||+|++.++.....
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46889999999999999999998654
No 473
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=81.27 E-value=0.58 Score=47.40 Aligned_cols=24 Identities=29% Similarity=0.328 Sum_probs=20.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-+.|+|++|+|||+|++.+. ...
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 347889999999999999999 643
No 474
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=80.95 E-value=0.62 Score=45.32 Aligned_cols=24 Identities=21% Similarity=0.375 Sum_probs=21.4
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
.-|.|.|++|+|||++++.+++.+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999998764
No 475
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=80.81 E-value=6.4 Score=30.04 Aligned_cols=64 Identities=25% Similarity=0.195 Sum_probs=49.7
Q ss_pred CCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHHH
Q 006051 525 IWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAITA 604 (663)
Q Consensus 525 ~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~A 604 (663)
.+|..-+++.+..+ -...+++++...|.+.. -+.++.+.+-|...|.-..|.+|+.+||..|
T Consensus 6 ~lp~a~v~Rl~r~~---g~~ris~~a~~~l~e~~---------------~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA 67 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA---GAERVSEQAAKVLAEYL---------------EEYAIEIAKKAVEFARHAGRKTVKVEDIKLA 67 (70)
T ss_dssp CSCHHHHHHHHHHT---TCSEECHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHTTTCSEECHHHHHHH
T ss_pred cCChHHHHHHHHHc---CcceeCHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHH
Confidence 35666677776544 24478999888887762 4567888999999999999999999999998
Q ss_pred HH
Q 006051 605 IL 606 (663)
Q Consensus 605 i~ 606 (663)
++
T Consensus 68 ~~ 69 (70)
T 1ku5_A 68 IK 69 (70)
T ss_dssp HT
T ss_pred HH
Confidence 74
No 476
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=80.72 E-value=0.99 Score=43.59 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=16.5
Q ss_pred cccccccCCCchHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFA 367 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~i 367 (663)
..+++.||+|+|||+++...
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 57999999999999765543
No 477
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=80.67 E-value=0.86 Score=47.45 Aligned_cols=23 Identities=13% Similarity=0.073 Sum_probs=19.3
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.-++++|+||+|||+|+..++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 45788999999999999887653
No 478
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=80.59 E-value=0.61 Score=48.58 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=20.4
Q ss_pred ccccc-cccccCCCchHHHHHHHHHHh
Q 006051 345 RGESH-LLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 345 r~~~~-iLL~G~pGtGKs~lar~ia~~ 370 (663)
+.... +.|+|+||+|||+|++.+...
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCC
Confidence 33455 889999999999999998854
No 479
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=80.46 E-value=0.71 Score=51.18 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.5
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
..|+|.|.||+|||++++.+++.+.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998754
No 480
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=80.43 E-value=8.8 Score=29.33 Aligned_cols=65 Identities=11% Similarity=0.069 Sum_probs=47.3
Q ss_pred CCCCHHHHHHHHHHHHccCCCccCHHHHHHHHHHHHHHHhcccCCCccccHhHHHHHHHHHHHHHhccCCCccChhhHHH
Q 006051 524 DIWPLAMLRRYIYFVKGYFKPILTKEAEKVISSYYQLQRRSATQNAARTTVRMLESLIRLAQAHARLMFRNEVTRLDAIT 603 (663)
Q Consensus 524 ~~~~~~~l~~~i~~~r~~~~p~ls~ea~~~l~~~y~~~r~~~~~~~~~~t~R~Le~lirla~a~A~l~~~~~V~~~Dv~~ 603 (663)
..|+.+.++.+..-+. -..+++++...|...... .+..+++-|.-.++-..|.+++.+||..
T Consensus 5 s~lp~~~v~~iaes~G---i~~lsddaa~~LA~dvEy---------------r~~eI~qeA~kfmrHakRk~Lt~~DI~~ 66 (70)
T 1taf_B 5 SSISAESMKVIAESIG---VGSLSDDAAKELAEDVSI---------------KLKRIVQDAAKFMNHAKRQKLSVRDIDM 66 (70)
T ss_dssp CCCCHHHHHHHHHHTT---CCCBCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred ccCCHHHHHHHHHHCC---CCCCCHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHcCCCeecHHHHHH
Confidence 3588888888876553 457999999888865321 2334566666666667799999999999
Q ss_pred HHH
Q 006051 604 AIL 606 (663)
Q Consensus 604 Ai~ 606 (663)
|++
T Consensus 67 Alk 69 (70)
T 1taf_B 67 SLK 69 (70)
T ss_dssp HHC
T ss_pred HHc
Confidence 875
No 481
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=80.43 E-value=2.2 Score=48.53 Aligned_cols=18 Identities=33% Similarity=0.595 Sum_probs=16.2
Q ss_pred cccccccCCCchHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLK 365 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar 365 (663)
.++++.||+|+|||..+-
T Consensus 47 ~~~lv~apTGsGKT~~~~ 64 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAE 64 (715)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHH
Confidence 689999999999999863
No 482
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=80.37 E-value=0.43 Score=51.00 Aligned_cols=17 Identities=29% Similarity=0.434 Sum_probs=15.2
Q ss_pred cccccccCCCchHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFL 364 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~la 364 (663)
.++|+.||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 57999999999999864
No 483
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=80.25 E-value=0.29 Score=46.51 Aligned_cols=23 Identities=26% Similarity=0.573 Sum_probs=20.4
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
..+|+++|++|+|||+|+..+..
T Consensus 11 ~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 11 TYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp EEEEEEECCTTSSHHHHHCBCTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 47899999999999999988764
No 484
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=80.13 E-value=0.88 Score=43.35 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=25.6
Q ss_pred cccccccCCCchHHHHHHHHHHhcCCceEEeC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNRSVITTG 379 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~~~~~~~ 379 (663)
..|-|+|..|+|||++++.+++ .+.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 3477899999999999999998 677776643
No 485
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=80.04 E-value=0.84 Score=49.09 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=20.0
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
--+++.|+||+|||+++..++..
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999888763
No 486
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=80.02 E-value=0.72 Score=48.49 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=22.6
Q ss_pred cccccccccccCCCchHHHHHHHHHH
Q 006051 344 VRGESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 344 ~r~~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+....+.|+|+||+|||+|++++..
T Consensus 17 v~~g~~vgiVG~pnaGKSTL~n~Ltg 42 (392)
T 1ni3_A 17 PGNNLKTGIVGMPNVGKSTFFRAITK 42 (392)
T ss_dssp SSSCCEEEEEECSSSSHHHHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHC
Confidence 34457899999999999999999987
No 487
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=79.76 E-value=0.55 Score=45.40 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=18.9
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
.-|.|.|++|+|||++++.+++.+.
T Consensus 26 ~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 26 KFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CEEEEECCC---CHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5688999999999999999998653
No 488
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=79.66 E-value=0.7 Score=44.29 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=23.3
Q ss_pred cccccccCCCchHHHHHHHHHHhcCC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSNR 373 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~~ 373 (663)
.-|.+.|++|+|||++++.+++....
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 56889999999999999999997765
No 489
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=79.65 E-value=0.71 Score=49.87 Aligned_cols=25 Identities=24% Similarity=0.110 Sum_probs=22.0
Q ss_pred cccccccCCCchHHHHHHHHHHhcC
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLSN 372 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~~ 372 (663)
--+.|+||+|+|||+|++.++.+.+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 4578999999999999999998754
No 490
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=79.53 E-value=0.66 Score=45.96 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.8
Q ss_pred ccccccccCCCchHHHHHHHHHH
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~ 369 (663)
...|+++|++|+|||+|+..+..
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHhC
Confidence 47899999999999999998875
No 491
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=79.48 E-value=0.74 Score=50.55 Aligned_cols=25 Identities=28% Similarity=0.344 Sum_probs=20.6
Q ss_pred ccccccccCCCchHHHHHHH--HHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKF--AAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~--ia~~~ 371 (663)
...++|+||+|+|||+|++. ++.+.
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 36789999999999999999 45543
No 492
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=79.43 E-value=0.74 Score=49.03 Aligned_cols=25 Identities=28% Similarity=0.292 Sum_probs=21.2
Q ss_pred ccccccccCCCchHHHHHHHHHHhc
Q 006051 347 ESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 347 ~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
+.-++++|++|+|||+++..++..+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l 121 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFY 121 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4678999999999999988888643
No 493
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=79.30 E-value=0.74 Score=43.58 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=19.5
Q ss_pred ccccccCCCchHHHHHHHHHHhc
Q 006051 349 HLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-.+|+||.|+|||+++.++.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 35788999999999999997544
No 494
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=79.25 E-value=0.67 Score=48.21 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=19.8
Q ss_pred cccccccCCCchHHHHHHHHHH
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAK 369 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~ 369 (663)
.+|+++|++|+|||+|++.+..
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~ 59 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFL 59 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHhC
Confidence 6799999999999999999754
No 495
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=79.15 E-value=1.1 Score=51.79 Aligned_cols=20 Identities=35% Similarity=0.436 Sum_probs=16.4
Q ss_pred ccccccCCCchHHHHHHHHH
Q 006051 349 HLLLVGDPGTGKSQFLKFAA 368 (663)
Q Consensus 349 ~iLL~G~pGtGKs~lar~ia 368 (663)
..|+.||||||||+++..+.
T Consensus 377 ~~lI~GppGTGKT~~i~~~i 396 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIV 396 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 57899999999998765544
No 496
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=79.08 E-value=0.88 Score=47.48 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.2
Q ss_pred cccccccCCCchHHHHHHHHHHhc
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
-.++++||+|+|||+|++.+++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 579999999999999999888753
No 497
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=79.06 E-value=0.7 Score=46.72 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=20.5
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
..|.++|+||+|||+|++++...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999863
No 498
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=79.03 E-value=0.75 Score=50.61 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=22.9
Q ss_pred ccccccccccCCCchHHHHHHHHHHhc
Q 006051 345 RGESHLLLVGDPGTGKSQFLKFAAKLS 371 (663)
Q Consensus 345 r~~~~iLL~G~pGtGKs~lar~ia~~~ 371 (663)
...-.+.|+||.|+|||+|++.++.+.
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334568899999999999999999865
No 499
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=79.02 E-value=0.59 Score=44.44 Aligned_cols=24 Identities=46% Similarity=0.648 Sum_probs=20.4
Q ss_pred cccccccccCCCchHHHHHHH-HHH
Q 006051 346 GESHLLLVGDPGTGKSQFLKF-AAK 369 (663)
Q Consensus 346 ~~~~iLL~G~pGtGKs~lar~-ia~ 369 (663)
...+|+++|++|+|||+|++. +..
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~~~ 38 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHLTG 38 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 347899999999999999998 443
No 500
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=78.97 E-value=0.43 Score=48.43 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.9
Q ss_pred cccccccCCCchHHHHHHHHHHh
Q 006051 348 SHLLLVGDPGTGKSQFLKFAAKL 370 (663)
Q Consensus 348 ~~iLL~G~pGtGKs~lar~ia~~ 370 (663)
.-+.|+|+||+|||+|++.+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 46899999999999999998754
Done!