Query 006052
Match_columns 663
No_of_seqs 169 out of 714
Neff 5.9
Searched_HMMs 46136
Date Thu Mar 28 17:39:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006052.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006052hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11504 tynA tyramine oxidase 100.0 4E-183 8E-188 1535.0 70.0 615 24-661 10-638 (647)
2 PLN02566 amine oxidase (copper 100.0 8E-181 2E-185 1515.7 69.9 613 26-653 20-646 (646)
3 PRK14696 tynA tyramine oxidase 100.0 2E-179 4E-184 1516.6 69.7 618 24-659 84-721 (721)
4 COG3733 TynA Cu2+-containing a 100.0 2E-175 4E-180 1396.6 57.9 612 25-659 27-654 (654)
5 KOG1186 Copper amine oxidase [ 100.0 5E-155 1E-159 1275.2 52.8 625 21-659 21-657 (670)
6 PF01179 Cu_amine_oxid: Copper 100.0 6E-136 1E-140 1111.5 35.4 401 246-659 1-413 (413)
7 PF02728 Cu_amine_oxidN3: Copp 99.9 3.5E-22 7.7E-27 179.2 9.3 99 122-224 1-101 (101)
8 PF02727 Cu_amine_oxidN2: Copp 99.8 1.3E-19 2.8E-24 158.2 4.0 85 28-115 1-85 (86)
9 PF09248 DUF1965: Domain of un 57.4 8.4 0.00018 33.2 2.3 28 192-220 3-35 (74)
10 PF04270 Strep_his_triad: Stre 39.0 17 0.00036 29.4 1.2 19 29-47 34-52 (53)
11 PF02728 Cu_amine_oxidN3: Copp 29.2 13 0.00028 33.3 -0.9 79 32-115 2-93 (101)
No 1
>PRK11504 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=3.6e-183 Score=1534.95 Aligned_cols=615 Identities=34% Similarity=0.581 Sum_probs=577.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEe--CCeeEEE
Q 006052 24 SHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARI--DHQTHEL 101 (663)
Q Consensus 24 ~~~~HPldpLt~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vL~~l~~~~~~~p~R~A~vv~~~--~~~~~E~ 101 (663)
....|||||||++||++|++|||++.+. .+.++|.+|+|.||+|++|++|+.++ +++|+|+|++++ ++.++|+
T Consensus 10 ~~~~HPLdpLt~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~~~~g~---~~~R~a~v~~~~~~~~~~~e~ 84 (647)
T PRK11504 10 AAVSHPLDPLTAAEIEAAVAILRAEGLL--GESTRFVSIELAEPPKAEVLAFDPGD---PIDRRAFVVLYDRATGKTYEA 84 (647)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcccc--CCceEEEEeeccCCCHHHHHhhhcCC---CCCcEEEEEEEECCCCcEEEE
Confidence 3456999999999999999999998763 25789999999999999999999975 247999999996 5679999
Q ss_pred EEeCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhccChhHHHHHHHhCC-CCCCeEEccccccccCCccccCCCCceEE
Q 006052 102 IVDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIV 180 (663)
Q Consensus 102 ~V~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~g~~~~~~~~~~~~~R~~ 180 (663)
+|||+.++|++++.++ ++||+++.||+.+||++|++||+|++||+|||| ++++|+||||++|||+.+++. ++|++
T Consensus 85 vVdL~~~~V~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~---~~Rl~ 160 (647)
T PRK11504 85 VVSLTAGEVVSWEEIP-GVQPPILLEEFEECEEVVRADPRWQAALAKRGITDFDLVMVDPWSAGYFGEPEER---GRRLA 160 (647)
T ss_pred EEECCCCEEEEEEECC-CccCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCCcceEEEcCccccccCCCCcC---CceEE
Confidence 9999999999999987 469999999999999999999999999999999 578999999999999865433 68999
Q ss_pred EEEEEEe-cCCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCcCccccCCCCCCCCCCCceeeCCCCCeEEE
Q 006052 181 KVMCYYM-NGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI 259 (663)
Q Consensus 181 ~~~~f~~-~~~~n~ya~Pl~gl~~~vD~~~~~vv~i~~~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v 259 (663)
|++||+| ++++|+|||||+||+++||+++|||++|+|.+..|+|+.+ .+|.++.++ ++|+++||+.|+||||+||+|
T Consensus 161 ~~~~~~r~~~~~n~Ya~Pi~G~~~vvDl~~~~vv~i~d~g~~p~p~~~-~~Y~~~~~~-~~r~dlkPl~i~QPeG~sF~v 238 (647)
T PRK11504 161 RGLAFVRADPGDNGYARPIEGLVAVVDLNTMEVLRVEDHGVVPIPAED-GNYDPEFIP-PLRTDLKPLEITQPEGPSFTV 238 (647)
T ss_pred EEEEEEecCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-CCCChhHcc-ccccCCCCcceeCCCCCcEEE
Confidence 9999999 5799999999999999999999999999998877777775 599988764 679999999999999999999
Q ss_pred eCeEE---------eeeccCceeEeecEEeecCCCceeeEEEeeeeeeEEeecCCCChhhhhcceeccCCCCCCccccCC
Q 006052 260 DGHMI---------SFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTL 330 (663)
Q Consensus 260 ~g~~v---------~f~~reGlvl~~v~~~D~r~~~~r~I~Yrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L 330 (663)
+|++| |||+|||||||||+|.| .|++|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|
T Consensus 239 ~g~~V~W~~W~f~vgf~~reGlvL~dv~y~d--~g~~R~v~YrlslsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L 316 (647)
T PRK11504 239 DGNEVEWQKWSFRVGFNPREGLVLHQVSYDD--GGRERPILYRASLSEMVVPYGDPSPTHYWKNAFDAGEYGLGRLANSL 316 (647)
T ss_pred cCCEEEECCcEEEEecCCCCceEEEEEEEcC--CCCcceEEEEeeeeeeeeecCCCCcchhhceeeeccccCCccccccc
Confidence 99999 99999999999999998 67889999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEeeeEEecCCCCeEEeccceEEEEecCCCceeeccccCCCCeeEeeeeeceEEEEEEeEeecccceeEE
Q 006052 331 EPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVND 410 (663)
Q Consensus 331 ~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~ 410 (663)
++||||||+|+|||+++++++|+|++++|||||||+| +|+||||++++++..+++| +++||||+|+|||||||||+
T Consensus 317 ~lGcDCpg~i~Y~D~~~~~~~G~p~~~~naICihE~D-~GilwkHt~~r~~~~~v~r---~r~LVvr~I~TVgNYdYi~~ 392 (647)
T PRK11504 317 ELGCDCLGEIRYFDAVLADSDGEPYTIKNAICMHEED-YGILWKHTDFRTGSAEVRR---SRRLVISFFATVGNYDYGFY 392 (647)
T ss_pred ccCCCCCCCCEEcceEEecCCCCeEEecCEEEEeeec-CCeeeeeeccCCCcEEEEe---ccEEEEEEEEecccccEEEE
Confidence 9999999999999999999999999999999999999 7899999999987666544 45999999999999999999
Q ss_pred EEEeeCccEEEEEeeeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecC
Q 006052 411 WEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVN 490 (663)
Q Consensus 411 ~~F~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~ 490 (663)
|+|||||+||++|+|||||++++.. .+++.+||++|+++++|++|||+|||||||||||.+|||+++|+++++..
T Consensus 393 w~F~qdG~Ie~eV~aTGil~t~~~~-----~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~ 467 (647)
T PRK11504 393 WYFYQDGTIEFEVKLTGIVFTAAVP-----PGETPPYGTLVAPGLYAPNHQHFFNARLDMDVDGPGNSVYEVNSVPVPMG 467 (647)
T ss_pred EEEecCceEEEEEEeeeEEEeeeeC-----CCccCCCcceecCCcccccceEEEEEEEcccccCCCceEEEEEeEecCCC
Confidence 9999999999999999999986542 22346899999999999999999999999999999999999999998876
Q ss_pred CCCCCCceeEEEEEeeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCCccccCCCCCChhhhccccccce
Q 006052 491 DRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYN 569 (663)
Q Consensus 491 ~~~np~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~ivN~~~~n~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~~ 569 (663)
++||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|+++++++++++|+..+||+||+||
T Consensus 468 -~~np~g~~~~~~~t~l~tE~~a~~~~~~~~~R~~~ivN~~~~N~~G~pvgYkl~p~~~~~~l~~~~s~~~~ra~fa~~~ 546 (647)
T PRK11504 468 -PDNPHGNAFYTRETLLETESEAARDADPSTGRYWKIVNPNKKNRLGEPVAYKLVPGGNPPLLADPGSSIRQRAGFATHH 546 (647)
T ss_pred -CCCccceEEEEEEEEecchhhhhhccCCCCccEEEEECCCCcCCCCCeeeEEEccCCCccccCCCCchhhhcchhhhCc
Confidence 6999999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred eEEeeeCCCccCCCCcCccCCCCCCChhhhhcCCCceecCCeEEEEEeCcccCCCCCCCCCcccceeeeEEEeCCCCCCC
Q 006052 570 VWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESN 649 (663)
Q Consensus 570 lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~n 649 (663)
||||+|+|+|+||||+|+||+.+++||+.|+++||+|+|+|||+|+|||+||+||+|||||||+++.||+|||+|||++|
T Consensus 547 lwVT~y~d~E~~aag~y~~Qs~~~~gl~~~~~~~~~i~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~N 626 (647)
T PRK11504 547 LWVTPYDPDERYAAGDYPNQSAGGDGLPAYIAADRSIENTDVVLWYTFGITHVPRPEDWPVMPVDYAGFKLKPVGFFDRN 626 (647)
T ss_pred EEEeccCCCccccCCCCcccCCCCCCHHHHhcCCCccccCceEEEEecCcccCCChhhCCCCccceEEEEEEcCCCCCCC
Confidence 99999999999999999999999899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCC
Q 006052 650 PVLKVKQPKEEY 661 (663)
Q Consensus 650 P~ld~p~~~~~~ 661 (663)
|+||+|++.+..
T Consensus 627 Paldvp~s~~~~ 638 (647)
T PRK11504 627 PALDLPPEPPAA 638 (647)
T ss_pred ccccCCCccccc
Confidence 999999998743
No 2
>PLN02566 amine oxidase (copper-containing)
Probab=100.00 E-value=8e-181 Score=1515.68 Aligned_cols=613 Identities=59% Similarity=1.035 Sum_probs=569.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCC--CCCCCCEEEEEEEeCCeeEEEEE
Q 006052 26 QYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNET--TTNPPRQAFVIARIDHQTHELIV 103 (663)
Q Consensus 26 ~~HPldpLt~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vL~~l~~~~--~~~p~R~A~vv~~~~~~~~E~~V 103 (663)
..|||||||++||++|++|||++.+. ..+.++|.+|+|.||+|++|++||.++. .+.|+|+|+|++..+++++|++|
T Consensus 20 ~~HPLdpLs~~Ei~~a~~iv~~~~~~-~~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~p~R~a~v~~~~~~~~~e~vV 98 (646)
T PLN02566 20 LYHPLDPLNPQEINKIRLIVQKSHLG-NLPNLTFHFLDLEEPEKRDVLKWLSSNPSNKSPPPRRAKVVVRAGGETYELIV 98 (646)
T ss_pred CCCCCCCCCHHHHHHHHHHHHhhccC-CCCceEEEEEEccCCChHHHHhhhhcccCCCCCCCcEEEEEEecCCCEEEEEE
Confidence 36999999999999999999998753 1136899999999999999999998763 23468999988766778999999
Q ss_pred eCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhccChhHHHHHHHhCCCCCCeEEccccccccCCccccCCCCceEEEEE
Q 006052 104 DLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRIVKVM 183 (663)
Q Consensus 104 ~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~d~~~~g~~~~~~~~~~~~~R~~~~~ 183 (663)
||+.++|++++.+++.|||+++.||+.+||++|++||+|+++|+||||+.++|+||||++|||+. . + ++|++|++
T Consensus 99 dl~~~~v~~~~~~~g~G~p~~~~~e~~~~e~~~~~dp~~~~a~~~rgl~~~~V~~dpw~~G~~~~-~-~---~~R~~q~~ 173 (646)
T PLN02566 99 DLATGSITSSRVYTGHGYPPLTFIELFQASKLPLKYPKFKKSILRRGLNISEVSCIPFTVGWYGE-T-V---TKRALKIS 173 (646)
T ss_pred ECCCCEEEEEEEcCCCCcCCcCHHHHHHHHHHHhcCHHHHHHHHHcCCCcceEEEeCcccccCCC-C-C---CcEEEEEE
Confidence 99999999999998766999999999999999999999999999999988889999999999875 2 3 68999999
Q ss_pred EEEecCCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCcCccccCCCCCCCCCCCceeeCCC-CCeEEEeCe
Q 006052 184 CYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPD-GPSFTIDGH 262 (663)
Q Consensus 184 ~f~~~~~~n~ya~Pl~gl~~~vD~~~~~vv~i~~~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPe-G~sf~v~g~ 262 (663)
||+|++++|+|||||+||+++||++++||++|+|.+..++|+.++. +.|+++||+.|+||| |+||+|+|+
T Consensus 174 ~y~r~~~~N~Ya~Pl~G~~~vvDl~~~~vi~i~d~~~~p~p~~~~~---------~~R~d~kPl~i~QPegG~sF~v~G~ 244 (646)
T PLN02566 174 CFYRGGSVNVFARPIEGISILIDVDSMQIIKYSDRFRAPLPKAEGT---------DFRTKHKPFSFPCNVSDSGFTILGH 244 (646)
T ss_pred EEEcCCCcccccCccCCcEEEEECCCCEEEEEECCCCCccCCCCCC---------CCCcCCCCccccCCCCCCcEEEcCC
Confidence 9999889999999999999999999999999998765566664331 369999999999999 599999999
Q ss_pred EE---------eeeccCceeEeecEEeecCCCceeeEEEeeeeeeEEeecCCCChhhhhcceeccCCCCCCccccCCCCC
Q 006052 263 MI---------SFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPL 333 (663)
Q Consensus 263 ~v---------~f~~reGlvl~~v~~~D~r~~~~r~I~Yrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~~G 333 (663)
+| |||+|||||||+|+|+|++++++|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|++|
T Consensus 245 ~V~W~~W~f~vgf~~reGlvL~~v~~~D~~~~~~R~v~YrlSlsEm~VPYgDP~~~~~~k~~fD~GeyG~G~~a~~L~lG 324 (646)
T PLN02566 245 RVKWANWDFHVGFDARAGVTISTASVFDAKVKRFRRVLYRGHVSETFVPYMDPTSEWYFRTFMDIGEFGFGRSAVTLQPL 324 (646)
T ss_pred EEEecCcEEEEecCCCcceEEEeEEEeccCCCcceeEEEEeeeeeeEEecCCCCccccccceeeccccCccccccccccC
Confidence 99 999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEeeeEEecCCCCeEEeccceEEEEecCCCceeeccccCCCCeeEeeeeeceEEEEEEeEeecccceeEEEEE
Q 006052 334 RDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEF 413 (663)
Q Consensus 334 ~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~~~F 413 (663)
|||||+|+|||+++.+++|+|++++|||||||+|.|||||||++++..+..++.++++++||||+|+|||||||||+|+|
T Consensus 325 cDCpg~i~YlD~~~~~~~G~p~~~~NaICihE~D~GgilwkHt~~~~~~~~~r~g~~~~~LVvr~I~TVgNYDYif~w~F 404 (646)
T PLN02566 325 IDCPANAVYLDGYVAGADGQAQKMTNVICIFERYSGDVAFRHTEINVPGRVIRSGEPEISLVVRMVATLGNYDYILDWEF 404 (646)
T ss_pred CCCCCCcEEeeeEEecCCCCEEEecCEEEEEeecCCccceeeccCCCCccccccCcceEEEEEEEEEEeecccEEEEEEE
Confidence 99999999999999999999999999999999998799999999987665566678888999999999999999999999
Q ss_pred eeCccEEEEEeeeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecCC--
Q 006052 414 KQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVND-- 491 (663)
Q Consensus 414 ~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~~-- 491 (663)
||||+||+||+|||||+|++++|......+..+|||+|+++++|++|||+|||||||||||.+|||++.|+++++...
T Consensus 405 ~qdGtIe~eV~aTGil~t~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIdG~~Nsv~~~~~~~~~~~~~~ 484 (646)
T PLN02566 405 KKSGSIKVGVDLTGVLEMKATSYTNNDQITKDVYGTLVAENTIAVNHDHFLTYYLDLDVDGNGNSFVKAKLQTARVTAVN 484 (646)
T ss_pred ecCceEEEEEEeEEEEEecccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCCCeEEEEeeEEccCCCCC
Confidence 999999999999999999887664322222368999999999999999999999999999999999999999976553
Q ss_pred CCCCCceeEEEEEeeecChhhhhhhcCCCCcEEEEecCCCCCCCCCcceEEEecCCccccCCCCCChhhhccccccceeE
Q 006052 492 RRSSRKSYWTVDSKTAKTESDARIKLGSEPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNYNVW 571 (663)
Q Consensus 492 ~~np~~~~~~~~~~~~~tE~~a~~~~~~~~r~~~ivN~~~~n~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~~lw 571 (663)
++||++++|+++++++++|++|++++++..|.|+|+|++++|++|+|+||||+|++++.++++++|+..+||+||+||||
T Consensus 485 ~~np~g~~~~~~~~~~~tE~~a~~~~~~~~~~~~i~N~~~~N~~G~pvgYkL~p~~~~~~l~~~~s~~~~Ra~fa~~~lw 564 (646)
T PLN02566 485 ASSPRKSYWTVVKETAKTEAEGRIRLGSEPAELLIVNPNKKTKLGNQVGYRLITGQPVTSLLSDDDYPQIRAAYTKYQVW 564 (646)
T ss_pred CCCCCcceEEEEEEEecchhhhhhccCCCCceEEEECCCCcCCCCCeeeEEEccCCCccccCCCccchhhcchhhhCcEE
Confidence 69999999999999999999999999995578999999999999999999999999999999999999999999999999
Q ss_pred EeeeCCCccCCCCcCccCCCCCCChhhhhcCCCceecCCeEEEEEeCcccCCCCCCCCCcccceeeeEEEeCCCCCCCCC
Q 006052 572 VTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFESNPV 651 (663)
Q Consensus 572 VT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~nP~ 651 (663)
||||+|+|+||||.|++|++++++|+.|+++||+|+|+|||+|+|||+||+||+|||||||++++||+|||+|||++||+
T Consensus 565 VT~y~d~E~~aag~y~~qs~g~~gl~~w~~~~~~I~~~DiVlW~t~G~~HvPr~ED~PvMP~~~~gf~L~P~nFF~~NPa 644 (646)
T PLN02566 565 VTAYNKSERWAGGFYADRSRGDDGLAVWSSRNREIENKDIVLWYTVGFHHIPYQEDFPVMPTLHGGFELRPANFFESNPL 644 (646)
T ss_pred EecCCCcccCCCCcCccCCCCCCChhhhhcCCCcccCCceEEEEecccccCCChhhCCCcccccceEEEEcCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC
Q 006052 652 LK 653 (663)
Q Consensus 652 ld 653 (663)
|.
T Consensus 645 L~ 646 (646)
T PLN02566 645 LR 646 (646)
T ss_pred CC
Confidence 84
No 3
>PRK14696 tynA tyramine oxidase; Provisional
Probab=100.00 E-value=2e-179 Score=1516.56 Aligned_cols=618 Identities=32% Similarity=0.571 Sum_probs=565.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeCCeeEEEEE
Q 006052 24 SHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHELIV 103 (663)
Q Consensus 24 ~~~~HPldpLt~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vL~~l~~~~~~~p~R~A~vv~~~~~~~~E~~V 103 (663)
....|||||||++||++|++||+++.+. ..+++|.+|+|.||+|++|++||.++.+.+|+|+|+|+++.+++++|++|
T Consensus 84 ~~~~HPLdpLt~~Ei~~a~~iv~~~~~~--~~~~~F~~i~L~EP~K~~v~~~~~~~~~~~~~R~A~v~~~~~~~~~e~vV 161 (721)
T PRK14696 84 EKRPHPLNALTADEIKQAVEIVKASADF--KPNTRFTEISLKEPDKEAVWAFALENKPVDQPRKADVIMLDGKHVIEAVV 161 (721)
T ss_pred cCCCCCCCCCCHHHHHHHHHHHHhcccc--CCceEEEEEEecCCCcHHHHHHHhcCCCCCCCcEEEEEEEeCCCEEEEEE
Confidence 4457999999999999999999998752 14789999999999999999999853123378999999998788999999
Q ss_pred eCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhccChhHHHHHHHhCC-CCCCeEEccccccccCCccccCCCCceEEEE
Q 006052 104 DLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKV 182 (663)
Q Consensus 104 ~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~g~~~~~~~~~~~~~R~~~~ 182 (663)
||+.++|++++.++ ++||+++.||+.+||++|++||+|+++|++||| ++++|+||||++|||+.+++. ..++|++|+
T Consensus 162 dL~~~~v~~~~~~~-~~~p~~~~~e~~~~e~~~~~dp~~~~ai~~rgl~~~~~V~~dpw~~G~~~~~~~~-~~~~Rl~~~ 239 (721)
T PRK14696 162 DLQNNKVLSWQPIK-DAHGMVLLDDFASVQNIINNSEEFAAALKKRGITDVKKVITTPLTVGYFDGKDGL-KQDARLLKV 239 (721)
T ss_pred ECCCCEEEEEEeCC-CccCCCCHHHHHHHHHHHhhCHHHHHHHHHcCCCCCCEEEEeCccccccCCcCcc-ccCceEEEE
Confidence 99999999999987 469999999999999999999999999999999 789999999999998865421 126899999
Q ss_pred EEEEecCCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCcCccccCCCCCCCCCCCceeeCCCCCeEEEeCe
Q 006052 183 MCYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTIDGH 262 (663)
Q Consensus 183 ~~f~~~~~~n~ya~Pl~gl~~~vD~~~~~vv~i~~~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~g~ 262 (663)
+||++.+++|+||||||||+++||++++||++|+|++..+.|... .+|.++. +.|+++||++|+||||+||+|+|+
T Consensus 240 ~~y~~~~~~N~Ya~Pi~G~~~vvDl~~~kVi~i~d~g~~~~p~~~-~~Y~~~~---~~r~~lKPl~i~QPeG~sF~v~G~ 315 (721)
T PRK14696 240 VSYLDVGDGNYWAHPIENLVAVVDLEQKKIIKIEEGPVVPVPMTA-RPYDGRD---RVAPAVKPLQIIEPEGKNYTITGD 315 (721)
T ss_pred EEEEcCCCccccccccCceEEEEECCCCEEEEEecCCCCCCCCCC-cCCCccc---cccCCCCCceeeCCCCCCEEEcCC
Confidence 999998899999999999999999999999999998765555543 5998765 379999999999999999999999
Q ss_pred EE---------eeeccCceeEeecEEeecCCCceeeEEEeeeeeeEEeecCCCChhhhhcceeccCCCCCCccccCCCCC
Q 006052 263 MI---------SFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLEPL 333 (663)
Q Consensus 263 ~v---------~f~~reGlvl~~v~~~D~r~~~~r~I~Yrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~~G 333 (663)
+| |||+|||||||||+|.| .|++|||+||+|||||+||||||+++|++|+|||+||||+|.+||+|++|
T Consensus 316 ~V~W~~W~f~vgf~~ReGlvL~dv~y~d--~g~~R~v~YrlSlsEm~VPYgdp~p~~~~k~~fD~GeyG~G~~an~L~lG 393 (721)
T PRK14696 316 TIHWRNWDFHLSLDSRVGPMLSTVTYND--NGTKRKVMYEGSLGGMIVPYGDPDIGWYFKAYLDSGDYGMGTLTSPIARG 393 (721)
T ss_pred eEEECCcEEEEecCCCcceEEEEEEEcC--CCcceeEEEEeeeeeEEEeCCCCCchhhhceeeeccccCCcccccccccC
Confidence 99 99999999999999998 57889999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEeeeEEecCCCCeEEeccceEEEEecCCCceeeccccCCCCeeEeeeeeceEEEEEEeEeecccceeEEEEE
Q 006052 334 RDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVNDWEF 413 (663)
Q Consensus 334 ~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~~~F 413 (663)
|||||+|+|||+++.+++|+|++++|||||||+| .|++|||++++.+ ++++| +++||||+|+|||||||+|+|+|
T Consensus 394 cDCpg~i~Y~D~~~~~~~G~p~~~~NaICihE~D-~G~~wkHt~~~~~-~~~~r---~r~LVvr~i~TVgNYDYif~w~F 468 (721)
T PRK14696 394 KDAPSNAVLLDETIADYTGVPMEIPRAIAVFERY-AGPEYKHQEMGQP-NVSTE---RRELVVRWISTVGNYDYIFDWVF 468 (721)
T ss_pred CCCCCCCEEeeeEEEcCCCCeEEecCEEEEeeec-CCCceeccccCCC-cceEe---eeEEEEEEEEEecceeEEEEEEE
Confidence 9999999999999999999999999999999999 6799999999854 44444 45999999999999999999999
Q ss_pred eeCccEEEEEeeeeeeeeeeeeecc---CCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecC
Q 006052 414 KQSGSIKVTVGLTGMVQVRGTTYTH---KDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVN 490 (663)
Q Consensus 414 ~~dGtIe~~v~aTG~l~~~~~~~~~---~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~ 490 (663)
||||+||++|+|||||+|+++.+.. ...+++.+|||+|+|+++|++|||+|||||||||||.+|||+++|++++|.+
T Consensus 469 ~qdGtIe~eV~aTGil~t~~i~~~~~~~~~~~~~~~yGt~V~~~v~a~~HqH~f~~RlD~dIDG~~Nsv~~~d~~~~p~~ 548 (721)
T PRK14696 469 HENGTIGIDAGATGIEAVKGVKAKTMHDETAKEDTRYGTLIDHNIVGTTHQHIYNFRLDLDVDGENNSLVAMDPVVKPNT 548 (721)
T ss_pred ecCceEEEEEEEEEEEEeccccccccccccccccCCCccEecCCcccccceEEEEEEEcccccCCcceEEEEeeeEccCC
Confidence 9999999999999999998754311 1112246899999999999999999999999999999999999999998886
Q ss_pred CCCCCCceeEEEEEeeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCC--cc----ccCCCCCChhhhcc
Q 006052 491 DRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEG--VT----GALLSSDDHPQIRA 563 (663)
Q Consensus 491 ~~~np~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~ivN~~~~n~~G~p~gYrl~p~~--~~----~~~~~~~s~~~~ra 563 (663)
++||++++|++++++++||++|++++++ +.|. |+|++++|++|+|+||||+|++ +. .+++.++|++.+||
T Consensus 549 -~~nP~g~~~~~~~t~l~tE~~a~~~~~~~~~R~--ivN~~~~N~~G~pvgYkL~p~~~~~~~~~~~~~~~p~s~~~~Ra 625 (721)
T PRK14696 549 -AGGPRTSTMQVNQYNIGNEQDAAQKFDPGTIRL--LSNPNKENRMGNPVSYQIIPYAGGTHPVAKGANFAPDEWIYHRL 625 (721)
T ss_pred -CCCccceEEEEEEEEccchhhhhhccCCccceE--EeCCCccCCCCCeeeEEEecCCCCccccccccccCCcchhhhhh
Confidence 4899999999999999999999999999 8886 9999999999999999999974 42 33688999999999
Q ss_pred ccccceeEEeeeCCCccCCCCcCccCCCCCCChhhhhcCCCceecCCeEEEEEeCcccCCCCCCCCCcccceeeeEEEeC
Q 006052 564 AFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPS 643 (663)
Q Consensus 564 ~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~ 643 (663)
+||+||||||||+|+|+||+|.|++|+.+++||+.|+++||+|+|+|||+|||||+||+||+|||||||+++.||+|||+
T Consensus 626 ~fa~~~lwVT~y~d~E~~aaG~y~~qs~g~~gl~~w~~~~e~i~n~DiV~W~t~G~~HvPr~ED~PvMP~~~~~f~LkP~ 705 (721)
T PRK14696 626 SFMDKQLWVTRYHPGERFPEGKYPNRSTHDTGLGQYSKDNESLDNTDAVVWMTTGTTHVARAEEWPIMPTEWVHTLLKPW 705 (721)
T ss_pred hhhhCcEEEeccCCcccCCCCCCccCCCCCCCHHHHhhCCCcccCCceEEEEecCcccCCchhhCCCccceeeeEEEEcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCC
Q 006052 644 NFFESNPVLKVKQPKE 659 (663)
Q Consensus 644 nFFd~nP~ld~p~~~~ 659 (663)
|||++||+||+|++.+
T Consensus 706 nFFd~nPaldvp~~~~ 721 (721)
T PRK14696 706 NFFDETPTLGLLKKDQ 721 (721)
T ss_pred CCCCCCcccCCCCCCC
Confidence 9999999999999854
No 4
>COG3733 TynA Cu2+-containing amine oxidase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-175 Score=1396.57 Aligned_cols=612 Identities=32% Similarity=0.579 Sum_probs=573.7
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEe--CCeeEEEE
Q 006052 25 HQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARI--DHQTHELI 102 (663)
Q Consensus 25 ~~~HPldpLt~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vL~~l~~~~~~~p~R~A~vv~~~--~~~~~E~~ 102 (663)
..+|||||||++||++|++|||+....+ ++++|..|+|.||+|++|++|...+ .+++|.|+++++. +..++|++
T Consensus 27 ~~shPLdpLt~~Eik~aVEivr~e~~~~--~~~~F~~VtL~eP~K~~v~~f~~~~--~~ieR~a~~~~~~~~~~~i~Eav 102 (654)
T COG3733 27 ERSHPLDPLTADEIKQAVEIVRAEADFK--KNFAFTEVTLLEPDKQEVLAFRLEN--KPIERKALAVVYELDGKGIYEAV 102 (654)
T ss_pred ccCCCCCccCHHHHHHHHHHHHhhcccC--CceeeEEEEecCCchHHHHHHHhcC--CCcchhhhhheeeccCCceEEEE
Confidence 3469999999999999999999988763 6899999999999999999998753 4789999999987 67899999
Q ss_pred EeCCCCeEEEEEeeCCCCCCCCCHHHHHHHHHHhccChhHHHHHHHhCC-CCCCeEEccccccccCCccccCCCCceEEE
Q 006052 103 VDLSLQEIASKRIYSGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVK 181 (663)
Q Consensus 103 V~l~~~~v~~~~~~~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~g~~~~~~~~~~~~~R~~~ 181 (663)
|+|++.+|.+|+.++. ++|+++.|||.++|.+++++|+|+|||+|||+ |+++|.||+|+.|+|+.+.. .+||+++
T Consensus 103 V~L~~nkv~~~q~i~~-a~p~i~ldef~~~e~iVr~d~~~~eA~~krGi~D~~~V~vdpwt~G~~~~~~~---~grr~~~ 178 (654)
T COG3733 103 VDLDNNKVLSWQPIKD-AHPMITLDEFASVENIVRNDPRFIEACKKRGITDMDQVIVDPWTAGYFDEEGL---KGRRRAL 178 (654)
T ss_pred EEcccceeeeeEeccc-cCCceeHHHHHHHHHHHhcCHHHHHHHHhcCCchhhceEeccccccccCcccc---ccceeEE
Confidence 9999999999999985 59999999999999999999999999999999 89999999999998874333 4899999
Q ss_pred EEEEEe-cCCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCcCccccCCCCCCCCCCCceeeCCCCCeEEEe
Q 006052 182 VMCYYM-NGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTID 260 (663)
Q Consensus 182 ~~~f~~-~~~~n~ya~Pl~gl~~~vD~~~~~vv~i~~~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v~ 260 (663)
.++|+| ..++|+|+|||+||+++||++++||++|+|++++|+|+. ..+|..+.++ +.+.++||++|.||||.||+|+
T Consensus 179 ~~m~yr~~e~~N~y~hPi~gl~aiVDl~~~kVv~idd~~vvPlp~~-~~ny~~e~i~-~~~~~~KpiqI~QPeg~sf~i~ 256 (654)
T COG3733 179 KVMWYRDVEDDNYYAHPIEGLVAIVDLEKKKVVRIDDHPVVPLPMK-RANYGRERIG-KALGPVKPIQIIQPEGKSFTIT 256 (654)
T ss_pred EEEEEEecCCCCcccccccceeeEEEcccCeEEEecCCCccccccc-ccCcCHHHhh-hhcCCCCCceeecCCCceEEEe
Confidence 999999 479999999999999999999999999999999999985 4578766654 3455599999999999999999
Q ss_pred CeEE---------eeeccCceeEeecEEeecCCCceeeEEEeeeeeeEEeecCCCChhhhhcceeccCCCCCCccccCCC
Q 006052 261 GHMI---------SFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTLE 331 (663)
Q Consensus 261 g~~v---------~f~~reGlvl~~v~~~D~r~~~~r~I~Yrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L~ 331 (663)
|++| |||+|||+|||||+|.| .|..|+|+||+||+||+||||||+++|++|++||+||||+|.++++|.
T Consensus 257 G~~i~W~~w~frig~n~ReGlvl~dVsY~D--~g~~Rpv~YraSl~eMvVPYGdPd~~h~~K~~fD~GeYglG~l~~pla 334 (654)
T COG3733 257 GDEISWQNWRFRIGMNPREGLVLSDVSYND--NGNKRPVLYRASLVEMVVPYGDPDPGHYFKNAFDSGEYGLGTLTSPLA 334 (654)
T ss_pred cCEEEEeeeeEEEeccccCCeEEEEEEEcC--CCccceEEEEeeecceeeecCCCCcchhhhhcccccccCccccccchh
Confidence 9999 99999999999999999 788999999999999999999999999999999999999999999999
Q ss_pred CCCCCCC-CcEEeeeEEecCCCCeEEeccceEEEEecCCCceeeccccCCCCeeEeeeeeceEEEEEEeEeecccceeEE
Q 006052 332 PLRDCPP-NAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVND 410 (663)
Q Consensus 332 ~G~DCpg-~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~ 410 (663)
+| ||.| +|+|||+++++.+|+|++++|||||||+| .|+||||+|+|+++.+++|.| .||||.|+|||||||+|+
T Consensus 335 lG-dc~g~~i~~lDa~~a~~tG~p~~i~~AIcIhEed-~GvlwKH~d~rs~~~~trr~r---~LVVs~i~Tv~NYdYg~~ 409 (654)
T COG3733 335 LG-DCAGSNIVLLDATFANYTGEPMTIPNAICIHEED-AGVLWKHQDFRSPNVETRRAR---GLVVSWIATVANYDYGFY 409 (654)
T ss_pred hc-ccccceeEEEeeeeeccCCceEEecceeEEEecc-ccceeeehhhcCCccceeecc---ceEEEEEEeecccceeEE
Confidence 99 9999 89999999999999999999999999999 889999999999987766666 899999999999999999
Q ss_pred EEEeeCccEEEEEeeeeeeeeeeeeeccCCCCcc-ccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeec
Q 006052 411 WEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEE-DVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRV 489 (663)
Q Consensus 411 ~~F~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~~-~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~ 489 (663)
|+|||||+||++++||||++|++. .+++. ..||++|.|++.|++||||||+||||||||.+|||+++|+...|.
T Consensus 410 WifhqDGtIe~e~klTGIin~~a~-----~e~~p~~~yGt~v~~~v~g~~HQH~Fn~RLdm~VDG~~Nsv~e~nv~~~P~ 484 (654)
T COG3733 410 WIFHQDGTIEFEAKLTGIINTKAI-----AEGQPDPTYGTLVDPNVVGHTHQHFFNARLDMDVDGERNSVVEMNVVGAPI 484 (654)
T ss_pred EEEEcCceEEEeecceeEEEeehh-----cCCCCCCCccceeccccccccceeEEEeeecccccCcccceEEEEcccCCC
Confidence 999999999999999999999754 22333 349999999999999999999999999999999999999877665
Q ss_pred CCCCCCCceeEEEEEeeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCCccccCCCCCChhhhccccccc
Q 006052 490 NDRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNY 568 (663)
Q Consensus 490 ~~~~np~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~ivN~~~~n~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~ 568 (663)
+ ..||+||+|.++++++++|++|.+++|+ +.|+|+|+|++|+|.+|+|+||||+|+.+..+++.++|.+.+|++||+|
T Consensus 485 ~-~~np~gNaf~~e~t~l~~e~dA~r~~d~~T~R~W~I~NpnkkN~~G~PvaYkLi~~~~~~~~~~~gs~v~~R~~Fa~~ 563 (654)
T COG3733 485 T-KGNPYGNAFQVEETVLKNEKDACRDADPKTSRYWKIANPNKKNYLGNPVAYKLIPGHNPTPPVAEGSQVRHRAGFATK 563 (654)
T ss_pred C-CCCCccceEEEecccCccHHHHHhhcCCcccceEEecCcccccccCCCceeEEecCCCCCCcCCCCcchhhhhhhccc
Confidence 3 4899999999999999999999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeeCCCccCCCCcCccCCCCCCChhhhhcCCCceecCCeEEEEEeCcccCCCCCCCCCcccceeeeEEEeCCCCCC
Q 006052 569 NVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFES 648 (663)
Q Consensus 569 ~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~ 648 (663)
|||||+|++.|+||+|+|+||+.+++||++|+++||||+|||||+|||||+||+||+|||||||+++.||.|+|+|||++
T Consensus 564 hlwVT~y~p~ErYp~GdYpnq~~~~~GLp~yi~~d~sl~neDlVvW~T~GitHv~rpED~PvMP~e~~gf~L~P~gFFd~ 643 (654)
T COG3733 564 HLWVTPYHPGERYPAGDYPNQSAGGKGLPEYIKDDRSLDNEDLVVWHTFGITHVPRPEDWPVMPVEWAGFLLKPRGFFDR 643 (654)
T ss_pred eEEEeccCcccccCCCCCCCCCCCCCChhhhhhccccccCcceEEEEecCceeccCcccCCccccchhceEecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q 006052 649 NPVLKVKQPKE 659 (663)
Q Consensus 649 nP~ld~p~~~~ 659 (663)
||+|++|...+
T Consensus 644 nPai~lp~~~n 654 (654)
T COG3733 644 NPAIDLPRKDN 654 (654)
T ss_pred CcccCCCccCC
Confidence 99999998764
No 5
>KOG1186 consensus Copper amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.9e-155 Score=1275.16 Aligned_cols=625 Identities=54% Similarity=0.907 Sum_probs=574.0
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeCCeeEE
Q 006052 21 FVPSHQYHPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHE 100 (663)
Q Consensus 21 ~~~~~~~HPldpLt~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vL~~l~~~~~~~p~R~A~vv~~~~~~~~E 100 (663)
++.....|||||||+.||.+++.||+....+.+.....|..|.|.||+|+-+|.|+.+.+.++|+|+|+++...+++++|
T Consensus 21 ~s~~~p~hPlDPLte~EL~kvr~iL~~~d~~s~~~~~~~~av~l~eP~K~~vlsw~~gP~~~pPpRRA~vVaR~gg~t~e 100 (670)
T KOG1186|consen 21 ASQERPSHPLDPLTELELPKVAAILAHLDPGSPHPAFEAVAVVLFEPQKQPVLSWLSGPLPHPPPRRALVVERHGGPTPE 100 (670)
T ss_pred ccCCCCCCCcCccchhhhhHHHHHHhhcccCCCCCceEEEEEEecCCCcCccceeccCCCCCCCcceeEEEeecCCCceE
Confidence 34456789999999999999999999987654455778999999999999999999954345789999999999999999
Q ss_pred EEEeCCCCeEEEEEee-CCCCCCCCCHHHHHHHHHHhccChhHHHHHHHhCCCCCCeEEccccccccCCccccCCCCceE
Q 006052 101 LIVDLSLQEIASKRIY-SGYGYPMFTFEDQENADKLAFTYPPFVASIRRRGLKLEEVVCESFSVGWYGAEEEEGKNKKRI 179 (663)
Q Consensus 101 ~~V~l~~~~v~~~~~~-~~~~~p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~~~~~v~~d~~~~g~~~~~~~~~~~~~R~ 179 (663)
++|+|+.+++++.+.+ .+.+.|+++.+|+.++.+++++.+.|..++.++|+.++.+.|.+|+.|||+...+. -+|+
T Consensus 101 ~~vdlst~evvs~~~~~~~~g~P~lT~~e~~~~s~~~l~~~~f~~si~~rG~~~s~vic~~~t~Gwyge~~~g---~~Rl 177 (670)
T KOG1186|consen 101 ARVDLSTAEVVSIKHHLVGNGYPILTADELFNTSGRVLAFKPFCPRGLRRGDRMSWVVCYPNTSGWYGEHPVG---LERL 177 (670)
T ss_pred EEEecchheeeecccccccCccccccHHHHHhhhcCCccccccchhhhccCCcceeEEEecceeeecccCCcc---hhhh
Confidence 9999999999997766 67789999999999999999999999999999999999999999999999854332 4799
Q ss_pred EEEEEEEecCCCCCccCCcCCcEEEEecCccEEEEEECCceeecCCCCCCcCccccCCCCCCCCCCCceeeCCCCCeEEE
Q 006052 180 VKVMCYYMNGTVNLFMRPIEGISMTVDLDEMKIIGFQDRVTVPVPKADETEFRESKIKPPFRQSLKAITVVQPDGPSFTI 259 (663)
Q Consensus 180 ~~~~~f~~~~~~n~ya~Pl~gl~~~vD~~~~~vv~i~~~~~~~~p~~~~~~y~~~~~~~~~r~~lkp~~i~QPeG~sf~v 259 (663)
++..||++.+..|+|.+||+|++++||+++|||+++.|+..+|+|+..+++|+.+... .-+|++..+||||||+|
T Consensus 178 ik~~~f~~~~~~n~y~rpieg~yi~vdld~~kVi~~~d~~~iP~P~~~Gt~~Rs~~~p-----~~~pLq~isPeGP~FrV 252 (670)
T KOG1186|consen 178 IKHMAFYRAGWVNQQVRPIEGFYIIVDLDEMKVIAGRDRVRVPLPKAKGTELRSSVLP-----GFKPLQPISPEGPGFRV 252 (670)
T ss_pred hhhcccccCCCeeEEEeecCceEEeeccccceEEEEecccccccCCCCCCccccccCC-----CCccccccCCCCCceEE
Confidence 9999999988999999999999999999999999999999899999888888644321 33346666799999999
Q ss_pred eCeEE---------eeeccCceeEeecEEeecCCCceeeEEEeeeeeeEEeecCCCChhhhhcceeccCCCCCCccccCC
Q 006052 260 DGHMI---------SFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFFDAGEYGYGLCSMTL 330 (663)
Q Consensus 260 ~g~~v---------~f~~reGlvl~~v~~~D~r~~~~r~I~Yrlsl~Em~vpY~dp~~~~~~k~~fD~geyG~G~~a~~L 330 (663)
+|+.| ||+.|+||||++++|.| .+.-|||+||+|+|||+||||||+++||+|+|||+||||+|++|++|
T Consensus 253 eG~~V~w~nW~Fh~~~~~r~Gl~is~v~~~d--~~~~r~v~Y~~s~~E~~vpYgdp~~~~~~~~y~D~Ge~G~G~~a~~L 330 (670)
T KOG1186|consen 253 EGHLVRWANWEFHIGFDVRAGLVISDASFFD--EDVYRRVLYKGSLSEMFVPYGDPSPDWYFKTYLDCGEFGLGQYAVSL 330 (670)
T ss_pred EEEEEEeeccEEEEccCCccceEEEEEEEcC--CCceeeEEEEeeeeeeEEecCCCCchhheeeeecccccCCCcccccc
Confidence 99988 99999999999999999 44589999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcEEeeeEEecCCCCeEEeccceEEEEecCCCceeeccccCCCCeeEeeeeeceEEEEEEeEeecccceeEE
Q 006052 331 EPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVVRTVSTFGNYDYVND 410 (663)
Q Consensus 331 ~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVvr~i~TVgNYDYi~~ 410 (663)
++|||||++|+|||++++..+|.|.+++|++||||+++|.|||||+++...+..++.+|++++|||||++||||||||||
T Consensus 331 ~~g~DCp~~a~y~D~~f~~~~g~p~~~~n~~CifE~~~G~~l~rH~~~~~~~~~~~~~~~~~~LVvr~~~tv~NYdYi~d 410 (670)
T KOG1186|consen 331 APGTDCPGNATYMDGHFAGQDGTPEKIPNAMCIFEKYAGDILWRHTEAEIPGLHITEVRPDVSLVVRMVTTVGNYDYIVD 410 (670)
T ss_pred ccCCCCCCcceEEEEEEecCCCCcEEecCcEEEEEccCCCceeeccccccCCCcccccccccEEEEEEeeeecccceEEE
Confidence 99999999999999999999999999999999999998889999999776666778999999999999999999999999
Q ss_pred EEEeeCccEEEEEeeeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCCCceEEEEEEEeecC
Q 006052 411 WEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDANSFVRSKLRTTRVN 490 (663)
Q Consensus 411 ~~F~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~Nsv~~~d~~~~~~~ 490 (663)
|+||+||.||++|+|||||+++++.|... ...|||+|+++++|++|||+|+|||||||||.+|++...+.+..+..
T Consensus 411 ~~F~~~G~ie~~v~lTG~l~~~~~~~~~~----~~~~Gt~v~~~~ig~~H~H~~~~rldldvdG~~n~~~v~~~~~~~~~ 486 (670)
T KOG1186|consen 411 YEFKPSGVIEAGVGLTGVLEVKPVEYGET----SDIYGTIVAENTIGVNHDHFVTFRLDLDVDGTKNNSFVRDELVTPRT 486 (670)
T ss_pred EEEecCCeEEEEEeeEEEEEeeccccccc----cccccceecccccccccceEEEEEEcccccCCccceeeeeeEeeccc
Confidence 99999999999999999999988765432 26899999999999999999999999999999655554555555555
Q ss_pred CC-CCCCceeEEEEEeeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCCccccCCCCCChhhhccccccc
Q 006052 491 DR-RSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALLSSDDHPQIRAAFTNY 568 (663)
Q Consensus 491 ~~-~np~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~ivN~~~~n~~G~p~gYrl~p~~~~~~~~~~~s~~~~ra~fa~~ 568 (663)
.+ .++++++|++++++++||++|+.+++. +++.|.|+|++++|+||+|+||||+|++++.+++++++.+++||+|++|
T Consensus 487 ~~~~~~~~~~~~~~~~~~kte~~~~~~~~~~~~~~~~~~n~n~~~~~G~~~gYrl~~~s~a~~ll~~~~~~~~r~af~~y 566 (670)
T KOG1186|consen 487 PPSVTPRKSYWTTKRKTAKTEAEARAKLNGLKAEELLVVNPNKKTKHGNPVGYRLVPGSTAGPLLPQDDYPQIRAAFTNY 566 (670)
T ss_pred CCCCCcccchhhhhhhhhhhHHHHhhhhccCCCceEEEECCCCccccCCccceEEeeCCcccccCCCCchHHhhhhhhcc
Confidence 55 456799999999999999999999988 9999999999999999999999999999999999999999999999999
Q ss_pred eeEEeeeCCCccCCCCcCccCCCCCCChhhhhcCCCceecCCeEEEEEeCcccCCCCCCCCCcccceeeeEEEeCCCCCC
Q 006052 569 NVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPTLNGGFELRPSNFFES 648 (663)
Q Consensus 569 ~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~~~~~f~L~P~nFFd~ 648 (663)
+||||+|+++|.||||.|.+|+.++++|+.|.+.|++|||+|||+|||+||||||++||||+|||...||.|||+|||++
T Consensus 567 ~l~VT~y~~~E~~~~g~y~~~~~~~~tl~~w~~~nr~ien~DiV~W~t~Gf~HiP~~ED~P~mpt~~~gF~LrP~NFF~~ 646 (670)
T KOG1186|consen 567 NLWVTPYNESEVWASGLYADQSQGDDTLAVWSQRNRSIENKDIVMWYTVGFHHVPCQEDFPTMPTLGGGFELRPTNFFER 646 (670)
T ss_pred eeEEeccCccccCcccccccCCCCCCcceehhhcccccccCceEEEEEcceeecCchhcCCCCcccCCceeecccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCC
Q 006052 649 NPVLKVKQPKE 659 (663)
Q Consensus 649 nP~ld~p~~~~ 659 (663)
||+|++||++.
T Consensus 647 nP~l~~~p~~~ 657 (670)
T KOG1186|consen 647 NPSLKSPPSKY 657 (670)
T ss_pred CccccCCCcce
Confidence 99999999875
No 6
>PF01179 Cu_amine_oxid: Copper amine oxidase, enzyme domain; InterPro: IPR015798 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents the C-terminal catalytic domain of copper amine oxidases, and has a super-sandwich fold consisting of 18 beta-strands in 2 sheets []. A domain with a similar structural fold can be found as the third domain in lysyl oxidase PplO [].; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 1W2Z_D 1KSI_B 1RKY_A ....
Probab=100.00 E-value=5.6e-136 Score=1111.45 Aligned_cols=401 Identities=41% Similarity=0.701 Sum_probs=356.7
Q ss_pred CceeeCCCCCeEEEeCeEE---------eeeccCceeEeecEEeecCCCceeeEEEeeeeeeEEeecCCCChhhhhccee
Q 006052 246 AITVVQPDGPSFTIDGHMI---------SFDVRAGMIISLASIYDLEKQQSRRVLYKGHVSEMFVPYMDLTEEWQRRTFF 316 (663)
Q Consensus 246 p~~i~QPeG~sf~v~g~~v---------~f~~reGlvl~~v~~~D~r~~~~r~I~Yrlsl~Em~vpY~dp~~~~~~k~~f 316 (663)
||+|+||||+||+|+|++| |||+|||||||||+|.| ++++|+||+|||||+||||||+++|++|+||
T Consensus 1 Pl~i~qP~G~sf~v~g~~v~w~~W~f~~~~~~r~Gl~l~dV~y~~----~~~~I~yr~sl~Em~vpY~d~~~~~~~~~~~ 76 (413)
T PF01179_consen 1 PLHIVQPEGPSFTVDGNYVEWQGWSFRVGFNPREGLVLHDVRYKG----ERRPILYRLSLQEMVVPYGDPDPPHHRKNAF 76 (413)
T ss_dssp -EEEE-TTS-SEEEETTEEEETTEEEEEEEETTTEEEEEEEEETT----EEEEEEEEEEEEEEEEEEE-SSTTHHH-EEE
T ss_pred CcceeCCCCCCEEEeCCEEEeCCcEEEEECCCCccceEEEEEEeC----CCccEEEEEeeeeeeeecCCCCchhhccccc
Confidence 8999999999999999999 99999999999999965 2226999999999999999999999999999
Q ss_pred ccCCCCCCccccCCCCCCCCCCCcEEeeeEEecCCCCeEEeccceEEEEecCCCceeeccccCCCCeeEeeeeeceEEEE
Q 006052 317 DAGEYGYGLCSMTLEPLRDCPPNAVFMDAYFSKQDGMPRKIPKAFCIFERYAGDIMWRHTEATIPGKTVREVRQDVSLVV 396 (663)
Q Consensus 317 D~geyG~G~~a~~L~~G~DCpg~a~YlD~~~~~~~g~p~~~~naiCi~E~d~~g~l~rH~~~~~~~~~~~~~r~~~~LVv 396 (663)
|+||||+|.++++|++|||||++|+|||+++++++|+|++++|||||||+|. ||||||++++++..+ +|++++|||
T Consensus 77 D~geyG~G~~~~~L~~G~DCpg~~~yld~~~~~~~g~p~~~~naiCi~E~d~-G~l~kH~~~~~~~~~---~~r~~~LVv 152 (413)
T PF01179_consen 77 DSGEYGLGSMANSLVLGCDCPGTITYLDAVLADDSGEPVTIPNAICIFEEDA-GPLWKHTDYRTGRFE---VRRSRRLVV 152 (413)
T ss_dssp HHHHTTTTTTBE-STTTTSS-TTSEEEEEEEEETTSSEEEEEEEEEEEEEEE-EEEEEEEETTSSEEE---EEEEEEEEE
T ss_pred cccccccCccccccccCCCCCceeEEcceEEECCCCCceeccceEEEEEecC-Cchhhcccccccccc---eeeccEEEE
Confidence 9999999999999999999999999999999999999999999999999995 599999999986654 455559999
Q ss_pred EEeEeecccceeEEEEEeeCccEEEEEeeeeeeeeeeeeeccCCCCccccccceeccCccccccceeEEeeeecCCCCCC
Q 006052 397 RTVSTFGNYDYVNDWEFKQSGSIKVTVGLTGMVQVRGTTYTHKDHMEEDVYGTLVAENSIAIHHDHFLTYRLDLDVDGDA 476 (663)
Q Consensus 397 r~i~TVgNYDYi~~~~F~~dGtIe~~v~aTG~l~~~~~~~~~~~~~~~~~yGt~V~~~~~a~~HqH~f~~RlD~dIdG~~ 476 (663)
|+|+|||||||||+|+|||||+||++|+|||||+++.. . .++..+||++|+++++|++|||+|||||||||||++
T Consensus 153 r~i~TV~NYDYi~~~~F~~dG~Ie~~v~aTGil~~~~~--~---~~~~~~yG~~V~~~~~a~~HqH~f~~RlD~dIdG~~ 227 (413)
T PF01179_consen 153 RTISTVGNYDYIFDWIFYQDGSIEVEVRATGILSTSPY--A---PGEQSPYGTRVAPGVMAPNHQHFFNFRLDFDIDGTN 227 (413)
T ss_dssp EEEEEETTEEEEEEEEEETTS-EEEEEEEEE---EEET--T---TTCGGGSEEEEETTEEEEEEEEEEEEEEEE-TTSSE
T ss_pred EEEEeccccceEEEEEEecCceEEEEEEeeeEEEEEec--C---CCCccCCcceEcCCccccceeEEEEEEEccccCCCC
Confidence 99999999999999999999999999999999998653 2 223478999999999999999999999999999999
Q ss_pred CceEEEEEEEeecC--CCCCCCceeEEEEEeeecChhhhhhhcCC-CCcEEEEecCCCCCCCCCcceEEEecCCccccCC
Q 006052 477 NSFVRSKLRTTRVN--DRRSSRKSYWTVDSKTAKTESDARIKLGS-EPAELLFVNPNKKTKMGNLIGYRLIPEGVTGALL 553 (663)
Q Consensus 477 Nsv~~~d~~~~~~~--~~~np~~~~~~~~~~~~~tE~~a~~~~~~-~~r~~~ivN~~~~n~~G~p~gYrl~p~~~~~~~~ 553 (663)
|||+++|+++++.+ ...||++++|+++++++++|++|++++++ ++|+|+|+|++++|++|+|+||||+|++++++++
T Consensus 228 Nsv~~~d~~~~~~~~~~~~np~~~~~~~~~t~~~tE~~a~~~~~~~~~r~w~vvN~~~~N~~G~p~gY~l~~~~~~~~l~ 307 (413)
T PF01179_consen 228 NSVVEVDIVPEPVTTPWSPNPYGNAFKTERTVLETEAEAARDFDPSTPRYWKVVNPNKKNPWGHPVGYRLQPGSSAHLLA 307 (413)
T ss_dssp EEEEEEEEEEEEEEETTSTTSEEEEEEEEEEEE-BGGGGEBETTCGGTEEEEEEEEEEEETTSSEEEEEEEEECBSS-SS
T ss_pred CeEEEEEeEEcccccCCCCCCccceeEEEEEeeCChhHhhhccCCCCccEEEEEcCCccccccCCceEEEecCCcccccC
Confidence 99999999999873 34789999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCCChhhhccccccceeEEeeeCCCccCCCCcCccCCCCCCChhhhhcCCCceecCCeEEEEEeCcccCCCCCCCCCccc
Q 006052 554 SSDDHPQIRAAFTNYNVWVTAYNKSEKWAGGLYADQSHGDDTLAVWSNRNRSIENKDIVLWYTLGFHHVPYQEDFPVMPT 633 (663)
Q Consensus 554 ~~~s~~~~ra~fa~~~lwVT~y~~~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~H~Pr~ED~Pvmp~ 633 (663)
+++|...+||+||+|+||||||+|+|+||+|.|++|++++.+|++|+++||+|+|||||+|+|+|+||+||+|||||||+
T Consensus 308 ~~~s~~~~ra~fa~~~lwVT~y~d~E~~asg~y~~q~~~~~~l~~~~~~~e~i~~~DiV~W~t~G~~HvPr~ED~Pvmp~ 387 (413)
T PF01179_consen 308 PPDSWVARRASFARHHLWVTKYKDSERYASGEYNNQSPGDVGLPDWIADNESIENEDIVVWVTFGFHHVPRPEDWPVMPV 387 (413)
T ss_dssp STTSCHHHHTGGGGSSEEEEE--TTGS-ST-TTTTT-SSSSSHHHHHTTSSB-SSEEEEEEEEEEEEE---GGGSSSEEE
T ss_pred CCcchhhhccccccCceEEeecCCCccCCCCCCccCCCCCCCHHHHhccCCcccCCCeEEEEeccccccCCcccCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeEEEeCCCCCCCCCCCCCCCCC
Q 006052 634 LNGGFELRPSNFFESNPVLKVKQPKE 659 (663)
Q Consensus 634 ~~~~f~L~P~nFFd~nP~ld~p~~~~ 659 (663)
+++||+|||+|||++||+||+|++.|
T Consensus 388 ~~~gf~L~P~nFF~~nPald~p~~~~ 413 (413)
T PF01179_consen 388 EWLGFMLKPFNFFDRNPALDVPPSVQ 413 (413)
T ss_dssp EEEEEEEEEESSSSSSTTTTCTTC--
T ss_pred cEEEEEEEcCCCCCCCccccCCCCCC
Confidence 99999999999999999999999876
No 7
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=99.87 E-value=3.5e-22 Score=179.18 Aligned_cols=99 Identities=35% Similarity=0.721 Sum_probs=83.0
Q ss_pred CCCCHHHHHHHHHHhccChhHHHHHHHhCC-CCCCeEEccccccccCCccccCCCCceEEEEEEEEecCCCCCccCCcCC
Q 006052 122 PMFTFEDQENADKLAFTYPPFVASIRRRGL-KLEEVVCESFSVGWYGAEEEEGKNKKRIVKVMCYYMNGTVNLFMRPIEG 200 (663)
Q Consensus 122 p~~~~ee~~~~e~~~~~~p~~~~a~~~~g~-~~~~v~~d~~~~g~~~~~~~~~~~~~R~~~~~~f~~~~~~n~ya~Pl~g 200 (663)
|+++.+|+.+++++++++|+|+++|+++|+ +++.++|++|++||++..+ + ++|++|++||+|...+|+|||||+|
T Consensus 1 ppi~~~E~~~~~~~~~~~p~~~~al~~rgi~d~~~v~~~pw~~g~~g~~~-~---g~Rl~~~~~~~r~~~~n~YahPi~g 76 (101)
T PF02728_consen 1 PPITLEEFAEAEEIVKADPEFQAALKKRGITDMDEVCCDPWSYGPFGEES-E---GRRLTWVLCFMRDSGNNFYAHPIEG 76 (101)
T ss_dssp S---HHHHHHHHHHHHTGHHHHHHHHHTTCSCGGGEEEEEEE-SSSSSST-T---TS-EEEEEEEE-SSTS-GGGSEEEC
T ss_pred CCcCHHHHHHHHHHHHHCHHHHHHHHHhCCCCcCeEEEeeecccCCCCCC-C---CceEEEEEEEEEcCCCcccccccCc
Confidence 689999999999999999999999999999 6899999999999988644 3 7899999999996555999999999
Q ss_pred cEEEEecCccEEEEEECCc-eeecC
Q 006052 201 ISMTVDLDEMKIIGFQDRV-TVPVP 224 (663)
Q Consensus 201 l~~~vD~~~~~vv~i~~~~-~~~~p 224 (663)
|+++||++++||++|++++ .+|.|
T Consensus 77 l~~~vD~~~~~vi~i~d~~v~~p~p 101 (101)
T PF02728_consen 77 LEPLVDLDSMEVIRIEDRGVFYPGP 101 (101)
T ss_dssp EEEEEETTTTEEEEEEEEEEEETT-
T ss_pred eEEEEECCCCEEEEEEeCCceeeCC
Confidence 9999999999999999988 56654
No 8
>PF02727 Cu_amine_oxidN2: Copper amine oxidase, N2 domain; InterPro: IPR015800 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N2) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1W2Z_A 1KSI_B 1US1_A 2C11_B 3ALA_E 2Y73_B 2C10_B 1PU4_B 2Y74_B 3SX1_A ....
Probab=99.77 E-value=1.3e-19 Score=158.16 Aligned_cols=85 Identities=33% Similarity=0.494 Sum_probs=71.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCceEEEEEEccCCCHHHHHhhhhcCCCCCCCCEEEEEEEeCCeeEEEEEeCCC
Q 006052 28 HPLDSLTPSEFSQIRSIVTKAYPESSTHKLTFQYVGLEEPSKQTVISWLKNETTTNPPRQAFVIARIDHQTHELIVDLSL 107 (663)
Q Consensus 28 HPldpLt~~Ei~~a~~il~~~~~~~~~~~~~f~~I~L~eP~K~~vL~~l~~~~~~~p~R~A~vv~~~~~~~~E~~V~l~~ 107 (663)
|||||||++||++|+++|+++... ...+++|.+|+|.||+|++||+| +.+ ++.|+|+|+|+++++++.+|++|+|+.
T Consensus 1 HPLdpLt~~Ei~~a~~il~~~~~~-~~~~~~F~~I~L~EP~K~~vl~~-~~~-~~~p~R~A~vv~~~~~~~~e~vVdl~~ 77 (86)
T PF02727_consen 1 HPLDPLTAEEIQAAAAILRDAHPL-AGEKNRFRSIELQEPPKAEVLAF-ERG-GPPPPRRARVVVYDGGQSYEAVVDLTS 77 (86)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHTGT-TTTSEEEEEEEEE---HHHHHHH-HCC-TTTS-EEEEEEEEETSSSSEEEEEEEE
T ss_pred CCCCCCCHHHHHHHHHHHHhcccc-CCCCeEEEEEEeCCCCHHHHhcc-ccC-CcCCCeEEEEEEEECCeeeeEEEECcC
Confidence 999999999999999999998832 13578999999999999999999 444 356899999999998877999999999
Q ss_pred CeEEEEEe
Q 006052 108 QEIASKRI 115 (663)
Q Consensus 108 ~~v~~~~~ 115 (663)
++|++|+.
T Consensus 78 ~~V~~~~~ 85 (86)
T PF02727_consen 78 GKVVSWKE 85 (86)
T ss_dssp EECSCEEE
T ss_pred CccccCcc
Confidence 99998875
No 9
>PF09248 DUF1965: Domain of unknown function (DUF1965); InterPro: IPR015328 Members of this family of fungal domains adopt a structure that consists of an alpha/beta motif. Their exact function has not, as yet, been determined []. ; PDB: 1N9E_A 1RKY_A 1W7C_A 3PGB_A.
Probab=57.44 E-value=8.4 Score=33.15 Aligned_cols=28 Identities=18% Similarity=0.470 Sum_probs=20.8
Q ss_pred CCccCCcCCcEEEEec-----CccEEEEEECCce
Q 006052 192 NLFMRPIEGISMTVDL-----DEMKIIGFQDRVT 220 (663)
Q Consensus 192 n~ya~Pl~gl~~~vD~-----~~~~vv~i~~~~~ 220 (663)
..+.+|| ||++.+|+ ++|||++|.+++.
T Consensus 3 ~~tllPl-gl~~~~DiTGrDpS~Wkv~gw~Yn~~ 35 (74)
T PF09248_consen 3 SETLLPL-GLYFKIDITGRDPSKWKVLGWVYNGQ 35 (74)
T ss_dssp -GGG-EE-EEEEEEE--SS-GGG-EEEEEEETTE
T ss_pred ccceece-eeEEEEEeccCChHHcEEEEEEECCE
Confidence 4578999 89999999 6899999997765
No 10
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=39.05 E-value=17 Score=29.40 Aligned_cols=19 Identities=21% Similarity=0.394 Sum_probs=15.8
Q ss_pred CCCCCCHHHHHHHHHHHHh
Q 006052 29 PLDSLTPSEFSQIRSIVTK 47 (663)
Q Consensus 29 PldpLt~~Ei~~a~~il~~ 47 (663)
|..+||+.|+++|.+.+.+
T Consensus 34 ~k~dLs~~E~~aA~~~~~~ 52 (53)
T PF04270_consen 34 PKSDLSASELKAAQAYLAG 52 (53)
T ss_dssp EGGGS-HHHHHHHHHHHH-
T ss_pred chhhCCHHHHHHHHHHHhc
Confidence 7889999999999999875
No 11
>PF02728 Cu_amine_oxidN3: Copper amine oxidase, N3 domain; InterPro: IPR015802 Amine oxidases (AO) are enzymes that catalyse the oxidation of a wide range of biogenic amines including many neurotransmitters, histamine and xenobiotic amines. There are two classes of amine oxidases: flavin-containing (1.4.3.4 from EC) and copper-containing (1.4.3.6 from EC). Copper-containing AO act as a disulphide-linked homodimer. They catalyse the oxidation of primary amines to aldehydes, with the subsequent release of ammonia and hydrogen peroxide, which requires one copper ion per subunit and topaquinone as cofactor []: RCH2NH2 + H2O + O2 = RCHO + NH3 + H2O2 Copper-containing amine oxidases are found in bacteria, fungi, plants and animals. In prokaryotes, the enzyme enables various amine substrates to be used as sources of carbon and nitrogen [, ]. In eukaryotes they have a broader range of functions, including cell differentiation and growth, wound healing, detoxification and cell signalling []. The copper amine oxidases occur as mushroom-shaped homodimers of 70-95 kDa, each monomer containing a copper ion and a covalently bound redox cofactor, topaquinone (TPQ). TPQ is formed by post-translational modification of a conserved tyrosine residue. The copper ion is coordinated with three histidine residues and two water molecules in a distorted square pyramidal geometry, and has a dual function in catalysis and TPQ biogenesis. The catalytic domain is the largest of the 3-4 domains found in copper amine oxidases, and consists of a beta sandwich of 18 strands in two sheets. The active site is buried and requires a conformational change to allow the substrate access. The two N-terminal domains share a common structural fold, its core consisting of a five-stranded antiparallel beta sheet twisted around an alpha helix. The D1 domains from the two subunits comprise the stalk, of the mushroom-shaped dimer, and interact with each other but do not pack tightly against each other [, ]. This entry represents one (N3) of the two N-terminal domains (N2/N3) that share a similar structure.; GO: 0005507 copper ion binding, 0008131 primary amine oxidase activity, 0048038 quinone binding, 0009308 amine metabolic process, 0055114 oxidation-reduction process; PDB: 1TU5_A 2PNC_B 3MPH_B 3HII_B 3HI7_A 3K5T_A 3HIG_A 1SPU_A 2WGQ_A 2WO0_A ....
Probab=29.15 E-value=13 Score=33.30 Aligned_cols=79 Identities=19% Similarity=0.231 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCC-CCCceEEEEEEccCCCHHHHHhhhhcC-CCC-CCCCEEEEEEEeC--C---e----e-
Q 006052 32 SLTPSEFSQIRSIVTKAYPES-STHKLTFQYVGLEEPSKQTVISWLKNE-TTT-NPPRQAFVIARID--H---Q----T- 98 (663)
Q Consensus 32 pLt~~Ei~~a~~il~~~~~~~-~~~~~~f~~I~L~eP~K~~vL~~l~~~-~~~-~p~R~A~vv~~~~--~---~----~- 98 (663)
|+|.+|+.++.+++++..... .-+. + .|..+.+-.+..|--+. |.. .-.|.+.+.+|.. + . -
T Consensus 2 pi~~~E~~~~~~~~~~~p~~~~al~~-r----gi~d~~~v~~~pw~~g~~g~~~~g~Rl~~~~~~~r~~~~n~YahPi~g 76 (101)
T PF02728_consen 2 PITLEEFAEAEEIVKADPEFQAALKK-R----GITDMDEVCCDPWSYGPFGEESEGRRLTWVLCFMRDSGNNFYAHPIEG 76 (101)
T ss_dssp ---HHHHHHHHHHHHTGHHHHHHHHH-T----TCSCGGGEEEEEEE-SSSSSSTTTS-EEEEEEEE-SSTS-GGGSEEEC
T ss_pred CcCHHHHHHHHHHHHHCHHHHHHHHH-h----CCCCcCeEEEeeecccCCCCCCCCceEEEEEEEEEcCCCcccccccCc
Confidence 689999999999988643110 0000 0 11122222223332221 111 2458888887762 2 1 1
Q ss_pred EEEEEeCCCCeEEEEEe
Q 006052 99 HELIVDLSLQEIASKRI 115 (663)
Q Consensus 99 ~E~~V~l~~~~v~~~~~ 115 (663)
.+++||+.+.+++++..
T Consensus 77 l~~~vD~~~~~vi~i~d 93 (101)
T PF02728_consen 77 LEPLVDLDSMEVIRIED 93 (101)
T ss_dssp EEEEEETTTTEEEEEEE
T ss_pred eEEEEECCCCEEEEEEe
Confidence 47889999999988653
Done!