BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006054
(663 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/309 (30%), Positives = 131/309 (42%), Gaps = 66/309 (21%)
Query: 115 LLLKTN-------TKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGM 167
LLL+ N T G T LHIAAR GH + V L+ + + +A +G
Sbjct: 98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK----------EASQACMTKKGF 147
Query: 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILL 227
T LH AA+Y ++ V ++L + D + P A G TPL+VA D+ + +L
Sbjct: 148 T------PLHVAAKYGKVRVAELLLERD-AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP 200
Query: 228 TCKSPADHGPM--GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLG 285
SP H P G T LH AA +N E+ + LL G + QG PLHLAA G
Sbjct: 201 RGGSP--HSPAWNGYTPLHIAAKQNQVEVARSLLQ--YGGSANAESVQGVTPLHLAAQEG 256
Query: 286 YYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI----------------- 328
+ +V LL + ++ + G PLHL A +G + LI
Sbjct: 257 HAEMVA-LLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPL 315
Query: 329 --MSCPSSCELVD-------------DRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNE 373
S + +LV G++ H A Q G + LLLK+ G NE
Sbjct: 316 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN---GASPNE 372
Query: 374 KNDDGNTPL 382
+ DG TPL
Sbjct: 373 VSSDGTTPL 381
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/301 (31%), Positives = 137/301 (45%), Gaps = 31/301 (10%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLI---AECKKPHQNDPEKGVEAVRLMQGMTNEAK--- 172
+N K ET LH+AAR GH +V K L+ A+ ++D A R+ G TN K
Sbjct: 43 SNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARI--GHTNMVKLLL 100
Query: 173 -------------DTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYK 219
T LH AAR ++ V L +++ S G TPL+VAA+ G
Sbjct: 101 ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQAC-MTKKGFTPLHVAAKYGKV 159
Query: 220 DVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLH 279
V + +L P G G T LH A N+ ++ K+LL G+ S A G+ PLH
Sbjct: 160 RVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG-GSPHSPA-WNGYTPLH 217
Query: 280 LAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVD 339
+AA V + LL+ SA ++ +G PLHLAA +G V L++S ++ L +
Sbjct: 218 IAAKQNQVEVARSLLQYGGSANAESV-QGVTPLHLAAQEGHAEMV-ALLLSKQANGNLGN 275
Query: 340 DRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL--LEHAGSGSLIPSFVC 397
G H Q G ++L+K G +V+ G TPL H G+ L+ +
Sbjct: 276 KSGLTPLHLVAQEGHVPVADVLIKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 398 H 398
H
Sbjct: 333 H 333
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 88/276 (31%), Positives = 126/276 (45%), Gaps = 27/276 (9%)
Query: 125 TLLHIAARHGHADVVKDLIAECKKP-----------HQNDPEKGVEAVR-LMQG---MTN 169
T LH+A+ GH +VK+L+ P H E + L+Q +
Sbjct: 16 TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA 75
Query: 170 EAKD--TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILL 227
+AKD T LH AAR ++VK+L E+ + P A AG TPL++AA G+ + +L
Sbjct: 76 KAKDDQTPLHCAARIGHTNMVKLLL-ENNANPNLATTAGHTPLHIAAREGHVETVLALLE 134
Query: 228 TCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYY 287
S A G T LH AA + ++LL+ + A + G PLH+A H
Sbjct: 135 KEASQACMTKKGFTPLHVAAKYGKVRVAELLLERD--AHPNAAGKNGLTPLHVAVHHNNL 192
Query: 288 NVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSS-CELVDDRGWNVF 346
++VK LL S A N G PLH+AA + ++ + L+ S+ E V +G
Sbjct: 193 DIVKLLLPRGGSPHSPAWN-GYTPLHIAAKQNQVEVARSLLQYGGSANAESV--QGVTPL 249
Query: 347 HFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
H A Q G + LLL + GNL N G TPL
Sbjct: 250 HLAAQEGHAEMVALLLSKQANGNL---GNKSGLTPL 282
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 24/238 (10%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQ-----------NDPEKGVEAVR--LMQGMTN 169
G T LH+A H + D+VK L+ PH + VE R L G +
Sbjct: 179 GLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSA 238
Query: 170 EAKD----TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDI 225
A+ T LH AA+ ++V +L + + N +G TPL++ A+ G+ V D+
Sbjct: 239 NAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVA-DV 296
Query: 226 LLTCKSPADHGP-MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHL 284
L+ D MG T LH A+ + ++ K LL + + G+ PLH AA
Sbjct: 297 LIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ--ADVNAKTKLGYSPLHQAAQQ 354
Query: 285 GYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL-IMSCPSSCELVDDR 341
G+ ++V LLK + ++ + ++G PL +A G ++ L +++ +S LV D+
Sbjct: 355 GHTDIVTLLLK-NGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 75/156 (48%), Gaps = 8/156 (5%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AAE G KD +D+L P GRT LH AA E+ K+LL S G +
Sbjct: 8 LIEAAENGNKDRVKDLLENGADPNASDSDGRTPLHYAAENGHKEIVKLLL--SKGADPNA 65
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
D G PLH AA G+ +VK LL AD +A D++G+ PLH AA G V+ L
Sbjct: 66 KDSDGRTPLHYAAENGHKEIVKLLLSKGADPNA---KDSDGRTPLHYAAENGHKEIVK-L 121
Query: 328 IMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLK 363
++S + D G A + G+ ++LL K
Sbjct: 122 LLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 54/166 (32%), Positives = 77/166 (46%), Gaps = 19/166 (11%)
Query: 130 AARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVK 189
AA +G+ D VKDL+ P+ +D + T LH AA ++VK
Sbjct: 11 AAENGNKDRVKDLLENGADPNASDSDG----------------RTPLHYAAENGHKEIVK 54
Query: 190 MLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFR 249
+L + P ++ G TPL+ AAE G+K++ + +L P GRT LH AA
Sbjct: 55 LLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAEN 113
Query: 250 NDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
E+ K+LL S G + +D G PL LA G +VK L K
Sbjct: 114 GHKEIVKLLL--SKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 71/158 (44%), Gaps = 28/158 (17%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHE 178
+++ G T LH AA +GH ++VK L+++ P+ D + T LH
Sbjct: 33 SDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSD----------------GRTPLHY 76
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AA ++VK+L + P ++ G TPL+ AAE G+K++ + +L P
Sbjct: 77 AAENGHKEIVKLLLSKGAD-PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSDSD 135
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276
GRT L A + E+ K+L Q GWL
Sbjct: 136 GRTPLDLAREHGNEEIVKLL-----------EKQGGWL 162
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 57/104 (54%), Gaps = 9/104 (8%)
Query: 281 AAHLGYYNVVKELLK--ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELV 338
AA G + VK+LL+ AD +A+ D++G+ PLH AA G V+ L++S +
Sbjct: 11 AAENGNKDRVKDLLENGADPNAS---DSDGRTPLHYAAENGHKEIVK-LLLSKGADPNAK 66
Query: 339 DDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
D G H+A ++G + ++LLL S G N K+ DG TPL
Sbjct: 67 DSDGRTPLHYAAENGHKEIVKLLL---SKGADPNAKDSDGRTPL 107
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 48/126 (38%), Positives = 67/126 (53%), Gaps = 4/126 (3%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
GRT LH AA E+ K+LL++ G + D+ G PLHLAA G+ VVK LL+A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
K D G+ PLHLAA G L V+ L++ + D G H A ++G +
Sbjct: 60 DVNAK-DKNGRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVV 117
Query: 359 ELLLKS 364
+LLL++
Sbjct: 118 KLLLEA 123
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 69/143 (48%), Gaps = 25/143 (17%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TALHE 178
G T LH+AAR+GH +VVK L+ E G + AKD T LH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-----------EAGADV---------NAKDKNGRTPLHL 41
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AAR ++VVK+L + + N G TPL++AA G+ +V + +L
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKN 100
Query: 239 GRTALHAAAFRNDTEMTKVLLDS 261
GRT LH AA E+ K+LL++
Sbjct: 101 GRTPLHLAARNGHLEVVKLLLEA 123
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.4 bits (176), Expect = 7e-13, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297
+G+ L AA D E+ ++L+ + G + D+ G+ PLHLAA G+ +V+ LLKA
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMAN--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 298 KSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRT 357
K D +G PLHLAA +G L V E+++ + D G+ H A + G
Sbjct: 59 ADVNAK-DKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 358 IELLLKSPSLGNLVNEKNDDGNTPL 382
+E+LLK+ G VN ++ G TP
Sbjct: 117 VEVLLKA---GADVNAQDKFGKTPF 138
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD 340
AA G + V+ +L A+ + D +G PLHLAA +G L V E+++ + D
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDK 66
Query: 341 RGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSL 391
G+ H A + G +E+LLK+ G VN K+ DG TPL A G L
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKA---GADVNAKDKDGYTPLHLAAREGHL 114
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 60/140 (42%), Gaps = 25/140 (17%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TALHE 178
G T LH+AAR GH ++V+ V L G AKD T LH
Sbjct: 35 GYTPLHLAAREGHLEIVE--------------------VLLKAGADVNAKDKDGYTPLHL 74
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AAR +++V++L K + + G TPL++AA G+ ++ + +L
Sbjct: 75 AAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 239 GRTALHAAAFRNDTEMTKVL 258
G+T A ++ +VL
Sbjct: 134 GKTPFDLAIREGHEDIAEVL 153
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 72.0 bits (175), Expect = 1e-12, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 76/145 (52%), Gaps = 8/145 (5%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297
+G+ L AA D E+ ++L+ + G + D+ G+ PLHLAA G+ +V+ LLKA
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMAN--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 58
Query: 298 KSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRT 357
K D +G PLHLAA +G L V E+++ + D G+ H A + G
Sbjct: 59 ADVNAK-DKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 116
Query: 358 IELLLKSPSLGNLVNEKNDDGNTPL 382
+E+LLK+ G VN ++ G TP
Sbjct: 117 VEVLLKA---GADVNAQDKFGKTPF 138
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD 340
AA G + V+ +L A+ + D +G PLHLAA +G L V E+++ + D
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDK 66
Query: 341 RGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSL 391
G+ H A + G +E+LLK+ G VN K+ DG TPL A G L
Sbjct: 67 DGYTPLHLAAREGHLEIVEVLLKA---GADVNAKDKDGYTPLHLAAREGHL 114
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/140 (27%), Positives = 61/140 (43%), Gaps = 25/140 (17%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TALHE 178
G T LH+AAR GH ++V+ V L G AKD T LH
Sbjct: 35 GYTPLHLAAREGHLEIVE--------------------VLLKAGADVNAKDKDGYTPLHL 74
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AAR +++V++L K + + G TPL++AA G+ ++ + +L
Sbjct: 75 AAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 133
Query: 239 GRTALHAAAFRNDTEMTKVL 258
G+T A + ++ +VL
Sbjct: 134 GKTPFDLAIDNGNEDIAEVL 153
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 74/143 (51%), Gaps = 8/143 (5%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297
+G+ L AA D E+ ++L+ + G + D GW PLHLAAH G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNG 70
Query: 298 KSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRT 357
K D+ G PLHLAA +G L V E+++ + D G+ H A + G
Sbjct: 71 ADVNAK-DSLGVTPLHLAARRGHLEIV-EVLLKNGADVNASDSHGFTPLHLAAKRGHLEI 128
Query: 358 IELLLKSPSLGNLVNEKNDDGNT 380
+E+LLK+ G VN ++ G T
Sbjct: 129 VEVLLKN---GADVNAQDKFGKT 148
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L + + G TPL++AA G+ ++ + +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-RDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAK 76
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
+G T LH AA R E+ +VLL + G + +D G+ PLHLAA G+ +V+ LLK
Sbjct: 77 DSLGVTPLHLAARRGHLEIVEVLLKN--GADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 296 --ADKSAAYK 303
AD +A K
Sbjct: 135 NGADVNAQDK 144
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 25/140 (17%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TALHE 178
G T LH+AA GH ++V+ V L G AKD T LH
Sbjct: 47 GWTPLHLAAHFGHLEIVE--------------------VLLKNGADVNAKDSLGVTPLHL 86
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AAR +++V++L K + +++ G TPL++AA+RG+ ++ + +L
Sbjct: 87 AARRGHLEIVEVLLKNGADVNA-SDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDKF 145
Query: 239 GRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 68.9 bits (167), Expect = 9e-12, Method: Composition-based stats.
Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 8/143 (5%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297
+G+ L AA D E+ ++L+ + G + D+ G+ PLHLAA G+ +V+ LLKA
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAG 70
Query: 298 KSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRT 357
K D +G PLHLAA +G L V E+++ + D G+ H A + G
Sbjct: 71 ADVNAK-DKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDKDGYTPLHLAAREGHLEI 128
Query: 358 IELLLKSPSLGNLVNEKNDDGNT 380
+E+LLK+ G VN ++ G T
Sbjct: 129 VEVLLKA---GADVNAQDKFGKT 148
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 5/111 (4%)
Query: 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD 340
AA G + V+ +L A+ + D +G PLHLAA +G L V E+++ + D
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAKDK 78
Query: 341 RGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSL 391
G+ H A + G +E+LLK+ G VN K+ DG TPL A G L
Sbjct: 79 DGYTPLHLAAREGHLEIVEVLLKA---GADVNAKDKDGYTPLHLAAREGHL 126
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 25/140 (17%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TALHE 178
G T LH+AAR GH ++V+ V L G AKD T LH
Sbjct: 47 GYTPLHLAAREGHLEIVE--------------------VLLKAGADVNAKDKDGYTPLHL 86
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AAR +++V++L K + + G TPL++AA G+ ++ + +L
Sbjct: 87 AAREGHLEIVEVLLKAGADVN-AKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKF 145
Query: 239 GRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 53/156 (33%), Positives = 74/156 (47%), Gaps = 8/156 (5%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA G D + ++ H G T LH AA+ E+ +VLL G +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKH--GADVNA 75
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
D GW PLHLAA G+ +V+ LLK AD +A D G PLHLAA +G L V E+
Sbjct: 76 RDTDGWTPLHLAADNGHLEIVEVLLKYGADVNA---QDAYGLTPLHLAADRGHLEIV-EV 131
Query: 328 IMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLK 363
++ + D G F ++ +G+ E+L K
Sbjct: 132 LLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 37/144 (25%), Positives = 67/144 (46%), Gaps = 27/144 (18%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDT----A 175
+ +G T LH+AA GH ++V+ V L G A+DT
Sbjct: 44 DDQGSTPLHLAAWIGHPEIVE--------------------VLLKHGADVNARDTDGWTP 83
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNA-GETPLYVAAERGYKDVTQDILLTCKSPAD 234
LH AA +++V++L K + +A +A G TPL++AA+RG+ ++ + +L
Sbjct: 84 LHLAADNGHLEIVEVLLKYGADV--NAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNA 141
Query: 235 HGPMGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 7/127 (5%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297
+G+ L AA D E+ ++L+ + G + +D GW PLHLAA+ G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILM--ANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLK-- 68
Query: 298 KSAAYKADNE-GKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRR 356
A AD+ G PLHLAA +G L V E+++ + D G+ H A G
Sbjct: 69 NGADVNADDSLGVTPLHLAADRGHLEVV-EVLLKNGADVNANDHNGFTPLHLAANIGHLE 127
Query: 357 TIELLLK 363
+E+LLK
Sbjct: 128 IVEVLLK 134
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 71/130 (54%), Gaps = 5/130 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L + +++ G TPL++AA G+ ++ + +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-SDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNAD 76
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
+G T LH AA R E+ +VLL + G + D G+ PLHLAA++G+ +V+ LLK
Sbjct: 77 DSLGVTPLHLAADRGHLEVVEVLLKN--GADVNANDHNGFTPLHLAANIGHLEIVEVLLK 134
Query: 296 --ADKSAAYK 303
AD +A K
Sbjct: 135 HGADVNAQDK 144
Score = 37.4 bits (85), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY 182
G T LH+AA GH ++V+ L+ + +D GV T LH AA
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLLKNGADVNADDS-LGV---------------TPLHLAADR 90
Query: 183 NQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTA 242
++VV++L K + + +N G TPL++AA G+ ++ + +L G+TA
Sbjct: 91 GHLEVVEVLLKNGADVNANDHN-GFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTA 149
Query: 243 LHAAAFRNDTEMTKVL 258
+ + ++ ++L
Sbjct: 150 FDISIDNGNEDLAEIL 165
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 53/145 (36%), Positives = 74/145 (51%), Gaps = 12/145 (8%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + AD GW PLHLAA+ G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGRDDEV-RILMAN--GADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A D G PLHLAA G L V E+++ + DD G H A G
Sbjct: 71 ADVNA---YDTLGSTPLHLAAHFGHLEIV-EVLLKNGADVNAKDDNGITPLHLAANRGHL 126
Query: 356 RTIELLLKSPSLGNLVNEKNDDGNT 380
+E+LLK G VN ++ G T
Sbjct: 127 EIVEVLLK---YGADVNAQDKFGKT 148
Score = 58.2 bits (139), Expect = 2e-08, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 73/146 (50%), Gaps = 8/146 (5%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR + D V++L + A+ G TPL++AA G+ ++ + +L +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNA-ADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY 76
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
+G T LH AA E+ +VLL + G + D G PLHLAA+ G+ +V+ LLK
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVEVLLKN--GADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Query: 296 --ADKSAAYKADNEGKIPLHLAAGKG 319
AD +A D GK ++ G
Sbjct: 135 YGADVNA---QDKFGKTAFDISINNG 157
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 25/140 (17%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TALHE 178
G T LH+AA GH ++V+ V L G A D T LH
Sbjct: 47 GWTPLHLAAYWGHLEIVE--------------------VLLKNGADVNAYDTLGSTPLHL 86
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AA + +++V++L K + +N G TPL++AA RG+ ++ + +L
Sbjct: 87 AAHFGHLEIVEVLLKNGADVNAKDDN-GITPLHLAANRGHLEIVEVLLKYGADVNAQDKF 145
Query: 239 GRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 146 GKTAFDISINNGNEDLAEIL 165
Score = 30.4 bits (67), Expect = 3.5, Method: Composition-based stats.
Identities = 28/108 (25%), Positives = 46/108 (42%), Gaps = 25/108 (23%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TA 175
+T G T LH+AA GH ++V+ V L G AKD T
Sbjct: 77 DTLGSTPLHLAAHFGHLEIVE--------------------VLLKNGADVNAKDDNGITP 116
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQ 223
LH AA +++V++L K + + G+T ++ G +D+ +
Sbjct: 117 LHLAANRGHLEIVEVLLKYGADVNAQ-DKFGKTAFDISINNGNEDLAE 163
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 76/147 (51%), Gaps = 12/147 (8%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ + AA N + K LL++ G + +D G PLHLAA G+ VVK LL
Sbjct: 4 LGKRLIEAAENGN-KDRVKDLLEN--GADVNASDSDGKTPLHLAAENGHKEVVKLLLSQG 60
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A D++GK PLHLAA G V+ L++S + D G H A ++G +
Sbjct: 61 ADPNAK---DSDGKTPLHLAAENGHKEVVK-LLLSQGADPNAKDSDGKTPLHLAAENGHK 116
Query: 356 RTIELLLKSPSLGNLVNEKNDDGNTPL 382
++LLL S G N + DG TPL
Sbjct: 117 EVVKLLL---SQGADPNTSDSDGRTPL 140
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 57/166 (34%), Positives = 81/166 (48%), Gaps = 19/166 (11%)
Query: 130 AARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVK 189
AA +G+ D VKDL+ E G + + ++ K T LH AA +VVK
Sbjct: 11 AAENGNKDRVKDLL-----------ENGAD----VNASDSDGK-TPLHLAAENGHKEVVK 54
Query: 190 MLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFR 249
+L + P ++ G+TPL++AAE G+K+V + +L P G+T LH AA
Sbjct: 55 LLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAEN 113
Query: 250 NDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
E+ K+LL S G + +D G PL LA G VVK L K
Sbjct: 114 GHKEVVKLLL--SQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 28/158 (17%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHE 178
+++ G+T LH+AA +GH +VVK L+++ P+ D + T LH
Sbjct: 33 SDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSD----------------GKTPLHL 76
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AA +VVK+L + P ++ G+TPL++AAE G+K+V + +L P
Sbjct: 77 AAENGHKEVVKLLLSQGAD-PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSDSD 135
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276
GRT L A + E+ K+L Q GWL
Sbjct: 136 GRTPLDLAREHGNEEVVKLL-----------EKQGGWL 162
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 53/147 (36%), Positives = 76/147 (51%), Gaps = 10/147 (6%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L + A+N G TPL++AA G+ ++ + +LL + D
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNA-ADNTGTTPLHLAAYSGHLEIVE-VLLKHGADVDA 75
Query: 236 GPM-GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
+ G T LH AA+ E+ +VLL + G + D G PLHLAA GY +V+ LL
Sbjct: 76 SDVFGYTPLHLAAYWGHLEIVEVLLKN--GADVNAMDSDGMTPLHLAAKWGYLEIVEVLL 133
Query: 295 K--ADKSAAYKADNEGKIPLHLAAGKG 319
K AD +A D GK ++ G
Sbjct: 134 KHGADVNA---QDKFGKTAFDISIDNG 157
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 52/145 (35%), Positives = 74/145 (51%), Gaps = 12/145 (8%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+GR L AA D E+ ++L+ + G + AD G PLHLAA+ G+ +V+ LLK
Sbjct: 14 LGRKLLEAARAGQDDEV-RILMAN--GADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD A +D G PLHLAA G L V E+++ + +D G H A + G
Sbjct: 71 ADVDA---SDVFGYTPLHLAAYWGHLEIV-EVLLKNGADVNAMDSDGMTPLHLAAKWGYL 126
Query: 356 RTIELLLKSPSLGNLVNEKNDDGNT 380
+E+LLK G VN ++ G T
Sbjct: 127 EIVEVLLKH---GADVNAQDKFGKT 148
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 64/143 (44%), Gaps = 25/143 (17%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TA 175
+ G T LH+AA GH ++V+ V L G +A D T
Sbjct: 44 DNTGTTPLHLAAYSGHLEIVE--------------------VLLKHGADVDASDVFGYTP 83
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
LH AA + +++V++L K + ++ G TPL++AA+ GY ++ + +L
Sbjct: 84 LHLAAYWGHLEIVEVLLKNGADVN-AMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQ 142
Query: 236 GPMGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK--A 296
G+T LH AA + E+ +VLL G + AD+ G PLHLAA G+ +V+ LLK A
Sbjct: 47 GKTPLHLAAIKGHLEIVEVLLKH--GADVNAADKMGDTPLHLAALYGHLEIVEVLLKNGA 104
Query: 297 DKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRR 356
D +A D G PLHLAA G L V E+++ + D G F ++ +G+
Sbjct: 105 DVNA---TDTYGFTPLHLAADAGHLEIV-EVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 357 TIELLLK 363
E+L K
Sbjct: 161 LAEILQK 167
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L + + +++G+TPL++AA +G+ ++ + +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAE-DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAA 76
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
MG T LH AA E+ +VLL + G + D G+ PLHLAA G+ +V+ LLK
Sbjct: 77 DKMGDTPLHLAALYGHLEIVEVLLKN--GADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD 340
AA G + V+ +L A+ + D+ GK PLHLAA KG L V E+++ + D
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDDSGKTPLHLAAIKGHLEIV-EVLLKHGADVNAADK 78
Query: 341 RGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSL 391
G H A G +E+LLK+ G VN + G TPL A +G L
Sbjct: 79 MGDTPLHLAALYGHLEIVEVLLKN---GADVNATDTYGFTPLHLAADAGHL 126
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 66/139 (47%), Gaps = 17/139 (12%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEA 179
+ G+T LH+AA GH ++V+ L+ H D V A M DT LH A
Sbjct: 44 DDSGKTPLHLAAIKGHLEIVEVLL-----KHGAD----VNAADKM-------GDTPLHLA 87
Query: 180 ARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMG 239
A Y +++V++L K + + G TPL++AA+ G+ ++ + +L G
Sbjct: 88 ALYGHLEIVEVLLKNGADVNA-TDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDKFG 146
Query: 240 RTALHAAAFRNDTEMTKVL 258
+TA + + ++ ++L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AAA D E+ ++L+ + G + D G PLHLAA G +V+ LLK
Sbjct: 6 LGKKLLEAAAAGQDDEV-RILMAN--GADVNATDDNGLTPLHLAAANGQLEIVEVLLKNG 62
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A+ D+ G PLHLAA G L V E+++ + D GW H A SG
Sbjct: 63 ADVNAS---DSAGITPLHLAAYDGHLEIV-EVLLKHGADVNAYDRAGWTPLHLAALSGQL 118
Query: 356 RTIELLLK 363
+E+LLK
Sbjct: 119 EIVEVLLK 126
Score = 58.9 bits (141), Expect = 1e-08, Method: Composition-based stats.
Identities = 50/151 (33%), Positives = 70/151 (46%), Gaps = 9/151 (5%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAA Q D V++L + +N G TPL++AA G ++ + +L
Sbjct: 10 LLEAAAAGQDDEVRILMANGADVNATDDN-GLTPLHLAAANGQLEIVEVLLKNGADVNAS 68
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
G T LH AA+ E+ +VLL G + D+ GW PLHLAA G +V+ LLK
Sbjct: 69 DSAGITPLHLAAYDGHLEIVEVLLKH--GADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQE 326
+ AD + L L A +N QE
Sbjct: 127 ------HGADVNAQDALGLTAFDISINQGQE 151
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
Query: 293 LLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQS 352
+L A+ + D+ G PLHLAA G+L V E+++ + D G H A
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIV-EVLLKNGADVNASDSAGITPLHLAAYD 82
Query: 353 GSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSL 391
G +E+LLK G VN + G TPL A SG L
Sbjct: 83 GHLEIVEVLLKH---GADVNAYDRAGWTPLHLAALSGQL 118
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHE 178
+++ G T LH+AA GH ++V+ L+ + D A T LH
Sbjct: 68 SDSAGITPLHLAAYDGHLEIVEVLLKHGADVNAYD----------------RAGWTPLHL 111
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNA-GETPLYVAAERGYKDVTQ 223
AA Q+++V++L K + +A +A G T ++ +G +D+ +
Sbjct: 112 AALSGQLEIVEVLLKHGADV--NAQDALGLTAFDISINQGQEDLAE 155
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 240 RTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKS 299
RTALH A TE+ + LL +G + D GW PLH+AA G +VK LL K
Sbjct: 41 RTALHWACSAGHTEIVEFLL--QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--GKG 96
Query: 300 AAYKADNE-GKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
A A N+ G PLH AA K R + + +++ ++ + D H A G+ + I
Sbjct: 97 AQVNAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 155
Query: 359 ELLLKSPSLGNLVNEKNDDGNTPL 382
+LL + N+ ++ +GNTPL
Sbjct: 156 HILLYYKASTNI---QDTEGNTPL 176
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 76/162 (46%), Gaps = 6/162 (3%)
Query: 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPY-DANNAGETPLYVAAERGYKDVTQDIL 226
T++ TALH A ++V+ L + +P D ++AG +PL++AA G ++ + +L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 227 LTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGY 286
G T LH AA +N E+ +LL+ G D +H AA G
Sbjct: 94 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYEATAMHRAAAKGN 151
Query: 287 YNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
++ LL K++ D EG PLHLA + R+ + L+
Sbjct: 152 LKMIHILLYY-KASTNIQDTEGNTPLHLACDEERVEEAKLLV 192
Score = 49.3 bits (116), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 28/207 (13%)
Query: 115 LLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDT 174
L +T+ T LH A GH ++V+ L L G+ KD
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 71
Query: 175 A----LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCK 230
A LH AA + ++VK L + + N G TPL+ AA + ++ +L
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 231 SPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVV 290
+P TA+H AA + + +M +LL T D +G PLHLA
Sbjct: 131 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ--DTEGNTPLHLACDEERVEEA 188
Query: 291 KELLKADKSAAYKADNEGKIPLHLAAG 317
K LL + ++ Y + E K PL +A G
Sbjct: 189 K-LLVSQGASIYIENKEEKTPLQVAKG 214
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 282 AHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI-MSCPSSCELVDD 340
A+ G +KE + ADKS A + D + + LH A G V+ L+ + P + + DD
Sbjct: 14 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--DD 71
Query: 341 RGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
GW+ H A +G ++ LL G VN N +G TPL
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLGK---GAQVNAVNQNGCTPL 110
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 319 GRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDG 378
G+L ++E I++ S D H+A +G +E LL+ LG VN+K+D G
Sbjct: 17 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAG 73
Query: 379 NTPL--LEHAGSGSLIPSFVCH-PKVDRLAFNQNNCS 412
+PL AG ++ + + +V+ A NQN C+
Sbjct: 74 WSPLHIAASAGRDEIVKALLGKGAQVN--AVNQNGCT 108
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 40/90 (44%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
GRT LH AA E+ K+LL++ G + D+ G PLHLAA G+ VVK LL+A
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
K D G+ PLHLAA G L V+ L+
Sbjct: 60 DVNAK-DKNGRTPLHLAARNGHLEVVKLLL 88
Score = 56.2 bits (134), Expect = 5e-08, Method: Composition-based stats.
Identities = 36/91 (39%), Positives = 50/91 (54%), Gaps = 2/91 (2%)
Query: 206 GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGT 265
G TPL++AA G+ +V + +L GRT LH AA E+ K+LL++ G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GA 59
Query: 266 QTSKADQQGWLPLHLAAHLGYYNVVKELLKA 296
+ D+ G PLHLAA G+ VVK LL+A
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 35/91 (38%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 274 GWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPS 333
G PLHLAA G+ VVK LL+A K D G+ PLHLAA G L V+ L++ +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVK-LLLEAGA 59
Query: 334 SCELVDDRGWNVFHFALQSGSRRTIELLLKS 364
D G H A ++G ++LLL++
Sbjct: 60 DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/108 (35%), Positives = 54/108 (50%), Gaps = 25/108 (23%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TALHE 178
G T LH+AAR+GH +VVK L+ E G + AKD T LH
Sbjct: 2 GRTPLHLAARNGHLEVVKLLL-----------EAGADV---------NAKDKNGRTPLHL 41
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDIL 226
AAR ++VVK+L + + N G TPL++AA G+ +V + +L
Sbjct: 42 AARNGHLEVVKLLLEAGADVNAKDKN-GRTPLHLAARNGHLEVVKLLL 88
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 4/84 (4%)
Query: 308 GKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSL 367
G+ PLHLAA G L V+ L++ + D G H A ++G ++LLL++
Sbjct: 2 GRTPLHLAARNGHLEVVK-LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--- 57
Query: 368 GNLVNEKNDDGNTPLLEHAGSGSL 391
G VN K+ +G TPL A +G L
Sbjct: 58 GADVNAKDKNGRTPLHLAARNGHL 81
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 240 RTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKS 299
RTALH A TE+ + LL +G + D GW PLH+AA G +VK LL K
Sbjct: 42 RTALHWACSAGHTEIVEFLL--QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALL--GKG 97
Query: 300 AAYKADNE-GKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
A A N+ G PLH AA K R + + +++ ++ + D H A G+ + I
Sbjct: 98 AQVNAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMI 156
Query: 359 ELLLKSPSLGNLVNEKNDDGNTPL 382
+LL + N+ ++ +GNTPL
Sbjct: 157 HILLYYKASTNI---QDTEGNTPL 177
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 75/162 (46%), Gaps = 6/162 (3%)
Query: 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPY-DANNAGETPLYVAAERGYKDVTQDIL 226
T++ TALH A ++V+ L + +P D ++AG +PL++AA G ++ + +L
Sbjct: 37 TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 227 LTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGY 286
G T LH AA +N E+ +LL+ G D +H AA G
Sbjct: 95 GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYEATAMHRAAAKGN 152
Query: 287 YNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
++ LL S + D EG PLHLA + R+ + L+
Sbjct: 153 LKMIHILLYYKASTNIQ-DTEGNTPLHLACDEERVEEAKLLV 193
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 85/207 (41%), Gaps = 28/207 (13%)
Query: 115 LLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDT 174
L +T+ T LH A GH ++V+ L L G+ KD
Sbjct: 33 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 72
Query: 175 A----LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCK 230
A LH AA + ++VK L + + N G TPL+ AA + ++ +L
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 131
Query: 231 SPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVV 290
+P TA+H AA + + +M +LL T D +G PLHLA
Sbjct: 132 NPDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ--DTEGNTPLHLACDEERVEEA 189
Query: 291 KELLKADKSAAYKADNEGKIPLHLAAG 317
K LL + ++ Y + E K PL +A G
Sbjct: 190 K-LLVSQGASIYIENKEEKTPLQVAKG 215
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 282 AHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI-MSCPSSCELVDD 340
A+ G +KE + ADKS A + D + + LH A G V+ L+ + P + + DD
Sbjct: 15 AYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK--DD 72
Query: 341 RGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
GW+ H A +G ++ LL G VN N +G TPL
Sbjct: 73 AGWSPLHIAASAGRDEIVKALLGK---GAQVNAVNQNGCTPL 111
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 319 GRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDG 378
G+L ++E I++ S D H+A +G +E LL+ LG VN+K+D G
Sbjct: 18 GKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAG 74
Query: 379 NTPL--LEHAGSGSLIPSFVCH-PKVDRLAFNQNNCS 412
+PL AG ++ + + +V+ A NQN C+
Sbjct: 75 WSPLHIAASAGRDEIVKALLGKGAQVN--AVNQNGCT 109
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 75/146 (51%), Gaps = 10/146 (6%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297
+G+ + AA N + K L+++ G + +D G PLH AA G+ +VK L+
Sbjct: 4 LGKRLIEAAENGN-KDRVKDLIEN--GADVNASDSDGRTPLHYAAKEGHKEIVKLLIS-- 58
Query: 298 KSAAYKA-DNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRR 356
K A A D++G+ PLH AA +G V+ L++S + D G H+A + G +
Sbjct: 59 KGADVNAKDSDGRTPLHYAAKEGHKEIVK-LLISKGADVNAKDSDGRTPLHYAAKEGHKE 117
Query: 357 TIELLLKSPSLGNLVNEKNDDGNTPL 382
++LL+ S G VN + DG TPL
Sbjct: 118 IVKLLI---SKGADVNTSDSDGRTPL 140
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/162 (27%), Positives = 71/162 (43%), Gaps = 36/162 (22%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----T 174
+++ G T LH AA+ GH ++VK LI+ +G AKD T
Sbjct: 33 SDSDGRTPLHYAAKEGHKEIVKLLIS--------------------KGADVNAKDSDGRT 72
Query: 175 ALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPAD 234
LH AA+ ++VK+L + + ++ G TPL+ AA+ G+K++ + ++
Sbjct: 73 PLHYAAKEGHKEIVKLLISKGADVNA-KDSDGRTPLHYAAKEGHKEIVKLLISKGADVNT 131
Query: 235 HGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276
GRT L A + E+ K+L Q GWL
Sbjct: 132 SDSDGRTPLDLAREHGNEEIVKLL-----------EKQGGWL 162
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/156 (33%), Positives = 72/156 (46%), Gaps = 8/156 (5%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA G D + ++ G T LH AAF E+ +VLL + G +
Sbjct: 18 LLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNA 75
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
D G PL LAA G+ +V+ LLK AD +A D EG PLHLAA G L V E+
Sbjct: 76 VDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA---NDMEGHTPLHLAAMFGHLEIV-EV 131
Query: 328 IMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLK 363
++ + D G F ++ +G+ E+L K
Sbjct: 132 LLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 66/131 (50%), Gaps = 9/131 (6%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D GW PLHLAA G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGRDDEV-RILMAN--GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A D+ G PL LAA G L V E+++ + D G H A G
Sbjct: 71 ADVNA---VDHAGMTPLRLAALFGHLEIV-EVLLKNGADVNANDMEGHTPLHLAAMFGHL 126
Query: 356 RTIELLLKSPS 366
+E+LLK+ +
Sbjct: 127 EIVEVLLKNGA 137
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 19/140 (13%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEA 179
+ G T LH+AA +GH ++V+ L+ V AV + A T L A
Sbjct: 44 DASGWTPLHLAAFNGHLEIVEVLLKNGAD---------VNAV-------DHAGMTPLRLA 87
Query: 180 ARYNQIDVVKMLTKEDPSLPYDANN-AGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
A + +++V++L K + +AN+ G TPL++AA G+ ++ + +L
Sbjct: 88 ALFGHLEIVEVLLKNGADV--NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF 145
Query: 239 GRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 62.4 bits (150), Expect = 9e-10, Method: Composition-based stats.
Identities = 45/127 (35%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK--A 296
G T LH E+ +VLL + S D+ GW PLHLAA+ G+ +V+ LLK A
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNAS--DKSGWTPLHLAAYRGHLEIVEVLLKYGA 104
Query: 297 DKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRR 356
D +A D +G PLHLAA G L V E+++ + D G F ++ +G+
Sbjct: 105 DVNA---MDYQGYTPLHLAAEDGHLEIV-EVLLKYGADVNAQDKFGKTAFDISIDNGNED 160
Query: 357 TIELLLK 363
E+L K
Sbjct: 161 LAEILQK 167
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 50/147 (34%), Positives = 73/147 (49%), Gaps = 10/147 (6%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANN-AGETPLYVAAERGYKDVTQDILLTCKSPAD 234
L EAAR Q D V++L + +AN+ G TPL++ G+ ++ + +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADV--NANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA 75
Query: 235 HGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
G T LH AA+R E+ +VLL G + D QG+ PLHLAA G+ +V+ LL
Sbjct: 76 SDKSGWTPLHLAAYRGHLEIVEVLL--KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLL 133
Query: 295 K--ADKSAAYKADNEGKIPLHLAAGKG 319
K AD +A D GK ++ G
Sbjct: 134 KYGADVNA---QDKFGKTAFDISIDNG 157
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 33/141 (23%), Positives = 64/141 (45%), Gaps = 27/141 (19%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY 182
G T LH+ +GH ++++ L+ + +D ++ T LH AA
Sbjct: 47 GITPLHLVVNNGHLEIIEVLLKYAADVNASD----------------KSGWTPLHLAAYR 90
Query: 183 NQIDVVKMLTKEDPSLPYDAN-NA----GETPLYVAAERGYKDVTQDILLTCKSPADHGP 237
+++V++L K Y A+ NA G TPL++AAE G+ ++ + +L
Sbjct: 91 GHLEIVEVLLK------YGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144
Query: 238 MGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 240 RTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKS 299
RTALH A TE+ + LL +G + D GW PLH+AA G +VK LL K
Sbjct: 41 RTALHWACSAGHTEIVEFLL--QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLV--KG 96
Query: 300 AAYKADNE-GKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
A A N+ G PLH AA K R + + +++ ++ + D H A G+ + +
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 359 ELLLKSPSLGNLVNEKNDDGNTPL 382
+LL + N+ ++ +GNTPL
Sbjct: 156 HILLFYKASTNI---QDTEGNTPL 176
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPY-DANNAGETPLYVAAERGYKDVTQDIL 226
T++ TALH A ++V+ L + +P D ++AG +PL++AA G ++ + +L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 227 LTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGY 286
+ G T LH AA +N E+ +LL+ G D +H AA G
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYDATAMHRAAAKGN 151
Query: 287 YNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
+V LL K++ D EG PLHLA + R+ + L+
Sbjct: 152 LKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 82/207 (39%), Gaps = 28/207 (13%)
Query: 115 LLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDT 174
L +T+ T LH A GH ++V+ L L G+ KD
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 71
Query: 175 A----LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCK 230
A LH AA ++VK L + + N G TPL+ AA + ++ +L
Sbjct: 72 AGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 231 SPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVV 290
+P TA+H AA + + +M +LL T D +G PLHLA
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ--DTEGNTPLHLACDEERVEEA 188
Query: 291 KELLKADKSAAYKADNEGKIPLHLAAG 317
K L ++ Y + E K PL +A G
Sbjct: 189 K-FLVTQGASIYIENKEEKTPLQVAKG 214
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 319 GRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDG 378
G+L+ ++E I++ S D H+A +G +E LL+ LG VN+K+D G
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAG 73
Query: 379 NTPL--LEHAGSGSLIPSFVCHPKVDRLAFNQNNCS 412
+PL AG ++ + + A NQN C+
Sbjct: 74 WSPLHIAASAGXDEIVKALLV-KGAHVNAVNQNGCT 108
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 72/144 (50%), Gaps = 9/144 (6%)
Query: 240 RTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKS 299
RTALH A TE+ + LL +G + D GW PLH+AA G +VK LL K
Sbjct: 41 RTALHWACSAGHTEIVEFLL--QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLV--KG 96
Query: 300 AAYKADNE-GKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
A A N+ G PLH AA K R + + +++ ++ + D H A G+ + +
Sbjct: 97 AHVNAVNQNGCTPLHYAASKNR-HEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMV 155
Query: 359 ELLLKSPSLGNLVNEKNDDGNTPL 382
+LL + N+ ++ +GNTPL
Sbjct: 156 HILLFYKASTNI---QDTEGNTPL 176
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 6/162 (3%)
Query: 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPY-DANNAGETPLYVAAERGYKDVTQDIL 226
T++ TALH A ++V+ L + +P D ++AG +PL++AA G ++ + +L
Sbjct: 36 TDQDSRTALHWACSAGHTEIVEFLLQ--LGVPVNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 227 LTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGY 286
+ G T LH AA +N E+ +LL+ G D +H AA G
Sbjct: 94 VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYDATAMHRAAAKGN 151
Query: 287 YNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
+V LL K++ D EG PLHLA + R+ + L+
Sbjct: 152 LKMVHILLFY-KASTNIQDTEGNTPLHLACDEERVEEAKFLV 192
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/207 (27%), Positives = 83/207 (40%), Gaps = 28/207 (13%)
Query: 115 LLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDT 174
L +T+ T LH A GH ++V+ L L G+ KD
Sbjct: 32 LATRTDQDSRTALHWACSAGHTEIVEFL--------------------LQLGVPVNDKDD 71
Query: 175 A----LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCK 230
A LH AA + ++VK L + + N G TPL+ AA + ++ +L
Sbjct: 72 AGWSPLHIAASAGRDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGGA 130
Query: 231 SPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVV 290
+P TA+H AA + + +M +LL T D +G PLHLA
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQ--DTEGNTPLHLACDEERVEEA 188
Query: 291 KELLKADKSAAYKADNEGKIPLHLAAG 317
K L ++ Y + E K PL +A G
Sbjct: 189 K-FLVTQGASIYIENKEEKTPLQVAKG 214
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 319 GRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDG 378
G+L+ ++E I++ S D H+A +G +E LL+ LG VN+K+D G
Sbjct: 17 GKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQ---LGVPVNDKDDAG 73
Query: 379 NTPL--LEHAGSGSLIPSFVCHPKVDRLAFNQNNCS 412
+PL AG ++ + + A NQN C+
Sbjct: 74 WSPLHIAASAGRDEIVKALLV-KGAHVNAVNQNGCT 108
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 95/216 (43%), Gaps = 7/216 (3%)
Query: 167 MTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDIL 226
M ++ K + LH AA +D+ ML + ++ + + TPL AAE + + + ++
Sbjct: 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQ-RTPLMEAAENNHLEAVKYLI 64
Query: 227 LTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGY 286
G T LH AA + E+ + LL S+ + D GW P+ A +
Sbjct: 65 KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL-SNGQMDVNCQDDGGWTPMIWATEYKH 123
Query: 287 YNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVF 346
++VK LL + DNE I LH AA G ++ + E++++ V+ G +
Sbjct: 124 VDLVKLLLSKGSDINIR-DNEENICLHWAAFSGCVD-IAEILLAAKCDLHAVNIHGDSPL 181
Query: 347 HFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
H A + + L L S L KN +G TPL
Sbjct: 182 HIAARENRYDCVVLFLSRDSDVTL---KNKEGETPL 214
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 77/169 (45%), Gaps = 7/169 (4%)
Query: 240 RTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKS 299
R+ LHAAA ++ +L+ + T DQ+ PL AA + VK L+KA
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR--TPLMEAAENNHLEAVKYLIKAGAL 69
Query: 300 AAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIE 359
K D EG LHLAA KG VQ L+ + DD GW +A + ++
Sbjct: 70 VDPK-DAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVK 128
Query: 360 LLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSL-IPSFVCHPKVDRLAFN 407
LLL S G+ +N ++++ N L A SG + I + K D A N
Sbjct: 129 LLL---SKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVN 174
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 59/205 (28%), Positives = 95/205 (46%), Gaps = 33/205 (16%)
Query: 127 LHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQID 186
LH AA GH D+ L+ + G +E + T L EAA N ++
Sbjct: 15 LHAAAEAGHVDICHMLV-----------QAGANI-----DTCSEDQRTPLMEAAENNHLE 58
Query: 187 VVKMLTKEDPSL-PYDANNAGETPLYVAAERGYKDVTQDIL------LTCKSPADHGPMG 239
VK L K + P DA G T L++AA++G+ +V Q +L + C+ PM
Sbjct: 59 AVKYLIKAGALVDPKDAE--GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM- 115
Query: 240 RTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKS 299
+ A +++ ++ K+LL S G+ + D + + LH AA G ++ E+L A K
Sbjct: 116 ---IWATEYKH-VDLVKLLL--SKGSDINIRDNEENICLHWAAFSGCVDIA-EILLAAKC 168
Query: 300 AAYKADNEGKIPLHLAAGKGRLNTV 324
+ + G PLH+AA + R + V
Sbjct: 169 DLHAVNIHGDSPLHIAARENRYDCV 193
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 25/172 (14%)
Query: 114 GLLLKTNTKGETLLHIAARHGHADVVKDLIA------ECKKPHQNDP------EKGVEAV 161
L+ + +G T LH+AA+ GH +VV+ L++ C+ P K V+ V
Sbjct: 68 ALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLV 127
Query: 162 RLMQG------MTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAE 215
+L+ + + ++ LH AA +D+ ++L L + N G++PL++AA
Sbjct: 128 KLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDL-HAVNIHGDSPLHIAAR 186
Query: 216 RGYKD-----VTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSS 262
D +++D +T K+ P+ +L++ + + +M+K L DS+
Sbjct: 187 ENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVW-SALQMSKALQDSA 237
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D G+ PLHLAA G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILM--ANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A +D G PLHLAA G L V E+++ + D+ G H A + G
Sbjct: 71 ADVNA---SDLTGITPLHLAAATGHLEIV-EVLLKHGADVNAYDNDGHTPLHLAAKYGHL 126
Query: 356 RTIELLLK 363
+E+LLK
Sbjct: 127 EIVEVLLK 134
Score = 42.7 bits (99), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 19/141 (13%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHE 178
T+ G T LH+AA +GH ++V+ L+ + +D + G+ T LH
Sbjct: 43 TDNDGYTPLHLAASNGHLEIVEVLLKNGADVNASD----------LTGI------TPLHL 86
Query: 179 AARYNQIDVVKMLTKEDPSL-PYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGP 237
AA +++V++L K + YD N G TPL++AA+ G+ ++ + +L
Sbjct: 87 AAATGHLEIVEVLLKHGADVNAYD--NDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144
Query: 238 MGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 145 FGKTAFDISIDNGNEDLAEIL 165
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 174 TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA 233
T LH AA +++V++L K + ++ G TPL++AA G+ ++ + +L
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNA-SDLTGITPLHLAAATGHLEIVEVLLKHGADVN 107
Query: 234 DHGPMGRTALHAAAFRNDTEMTKVLL 259
+ G T LH AA E+ +VLL
Sbjct: 108 AYDNDGHTPLHLAAKYGHLEIVEVLL 133
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 81/194 (41%), Gaps = 10/194 (5%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKS---- 231
LH+A N+ V+ L PSL + G PL+ + ++T +L ++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 232 --PADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNV 289
P D G T H A + E+ K L D + +K QG LHLA ++ V
Sbjct: 66 DYPDDSG---WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 290 VKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFA 349
+ L++ S K D +IPLH AA G L ++ L S+ D +GW A
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 350 LQSGSRRTIELLLK 363
L G LL++
Sbjct: 182 LAEGHGDAAVLLVE 195
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 6/171 (3%)
Query: 176 LHEAARYNQIDVVKMLTK--EDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA 233
LH + + ++ L E+ +L +++G TP ++A G +V + + P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 234 DHG--PMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVK 291
+ G T LH A + E+++ L+++ G D+ +PLH AA +G +++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 292 ELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRG 342
L KSA D +G PL A +G + L+ + +LVD++G
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCE 336
PLH A + V+ELL + S + D +G+IPLH + + + + ++S +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS-FQAHEITSFLLSKMENVN 63
Query: 337 L---VDDRGWNVFHFALQSGSRRTIELLLKSP 365
L DD GW FH A G+ ++ L P
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 33.1 bits (74), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 37/158 (23%), Positives = 61/158 (38%), Gaps = 21/158 (13%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQND-PEKGVEAVRLMQG--------------- 166
G T HIA G+ +VVK L KP N +GV + L G
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 167 ---MTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQ 223
+ ++ LH AA + ++++L S + G TPL+ A G+ D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA- 190
Query: 224 DILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDS 261
+LL K A++ + A + ++ K L++
Sbjct: 191 -VLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNN 227
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 311 PLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNL 370
PLH A + VQEL+ S PS D G H+++ + LL NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 371 VNEKNDDGNTPLLEHAGSGSL 391
+ +D G TP G+L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNL 85
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 72/145 (49%), Gaps = 12/145 (8%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D G PLHLAA G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A DN G PLHLAA G L V E+++ + D G+ H A G
Sbjct: 71 ADVNAW---DNYGATPLHLAADNGHLEIV-EVLLKHGADVNAKDYEGFTPLHLAAYDGHL 126
Query: 356 RTIELLLKSPSLGNLVNEKNDDGNT 380
+E+LLK G VN ++ G T
Sbjct: 127 EIVEVLLK---YGADVNAQDKFGKT 148
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 14/149 (9%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNA---GETPLYVAAERGYKDVTQDILLTCKSP 232
L EAAR Q D V++L D N G TPL++AA+ G+ ++ + +L
Sbjct: 18 LLEAARAGQDDEVRILMANGA----DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADV 73
Query: 233 ADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKE 292
G T LH AA E+ +VLL G + D +G+ PLHLAA+ G+ +V+
Sbjct: 74 NAWDNYGATPLHLAADNGHLEIVEVLLKH--GADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Query: 293 LLK--ADKSAAYKADNEGKIPLHLAAGKG 319
LLK AD +A D GK ++ G
Sbjct: 132 LLKYGADVNA---QDKFGKTAFDISIDNG 157
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 18/137 (13%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY 182
G+ LL AAR G D V+ L+A G + T+ T LH AA+
Sbjct: 15 GKKLLE-AARAGQDDEVRILMA-----------NGADV-----NATDWLGHTPLHLAAKT 57
Query: 183 NQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTA 242
+++V++L K + +N G TPL++AA+ G+ ++ + +L G T
Sbjct: 58 GHLEIVEVLLKYGADVN-AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTP 116
Query: 243 LHAAAFRNDTEMTKVLL 259
LH AA+ E+ +VLL
Sbjct: 117 LHLAAYDGHLEIVEVLL 133
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 35/144 (24%), Positives = 62/144 (43%), Gaps = 25/144 (17%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----T 174
T+ G T LH+AA+ GH ++V+ V L G A D T
Sbjct: 43 TDWLGHTPLHLAAKTGHLEIVE--------------------VLLKYGADVNAWDNYGAT 82
Query: 175 ALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPAD 234
LH AA +++V++L K + + G TPL++AA G+ ++ + +L
Sbjct: 83 PLHLAADNGHLEIVEVLLKHGADVNAK-DYEGFTPLHLAAYDGHLEIVEVLLKYGADVNA 141
Query: 235 HGPMGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEIL 165
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 70/138 (50%), Gaps = 9/138 (6%)
Query: 246 AAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKA- 304
AA + + K L+++ G + +D G PLH AA G+ VVK L+ K A A
Sbjct: 11 AAENGNKDRVKDLIEN--GADVNASDSDGRTPLHHAAENGHKEVVKLLIS--KGADVNAK 66
Query: 305 DNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364
D++G+ PLH AA G V+ L++S + D G H A ++G + ++LL+
Sbjct: 67 DSDGRTPLHHAAENGHKEVVK-LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI-- 123
Query: 365 PSLGNLVNEKNDDGNTPL 382
S G VN + DG TPL
Sbjct: 124 -SKGADVNTSDSDGRTPL 140
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 60/111 (54%), Gaps = 9/111 (8%)
Query: 281 AAHLGYYNVVKELLK--ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELV 338
AA G + VK+L++ AD +A+ D++G+ PLH AA G V+ L++S +
Sbjct: 11 AAENGNKDRVKDLIENGADVNAS---DSDGRTPLHHAAENGHKEVVK-LLISKGADVNAK 66
Query: 339 DDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSG 389
D G H A ++G + ++LL+ S G VN K+ DG TPL A +G
Sbjct: 67 DSDGRTPLHHAAENGHKEVVKLLI---SKGADVNAKDSDGRTPLHHAAENG 114
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 70/162 (43%), Gaps = 36/162 (22%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----T 174
+++ G T LH AA +GH +VVK LI+ +G AKD T
Sbjct: 33 SDSDGRTPLHHAAENGHKEVVKLLIS--------------------KGADVNAKDSDGRT 72
Query: 175 ALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPAD 234
LH AA +VVK+L + + ++ G TPL+ AAE G+K+V + ++
Sbjct: 73 PLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKGADVNT 131
Query: 235 HGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276
GRT L A + E+ K+L Q GWL
Sbjct: 132 SDSDGRTPLDLAREHGNEEVVKLL-----------EKQGGWL 162
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 81/194 (41%), Gaps = 10/194 (5%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKS---- 231
LH+A N+ V+ L PSL + G PL+ + ++T +L ++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 232 --PADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNV 289
P D G T H A + E+ K L D + +K QG LHLA ++ V
Sbjct: 66 DYPDDSG---WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 290 VKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFA 349
+ L++ S K D +IPLH AA G L ++ L S+ D +GW A
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 350 LQSGSRRTIELLLK 363
L G LL++
Sbjct: 182 LAEGHGDAAVLLVE 195
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 6/171 (3%)
Query: 176 LHEAARYNQIDVVKMLTK--EDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA 233
LH + + ++ L E+ +L +++G TP ++A G +V + + P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 234 DHG--PMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVK 291
+ G T LH A + E+++ L+++ G D+ +PLH AA +G +++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 292 ELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRG 342
L KSA D +G PL A +G + L+ + +LVD++G
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 43.1 bits (100), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCE 336
PLH A + V+ELL + S + D +G+IPLH + + + + ++S +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS-FQAHEITSFLLSKMENVN 63
Query: 337 L---VDDRGWNVFHFALQSGSRRTIELLLKSP 365
L DD GW FH A G+ ++ L P
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQND-PEKGVEAVRLMQG--------------- 166
G T HIA G+ +VVK L KP N +GV + L G
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 167 ---MTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQ 223
+ ++ LH AA + ++++L S + G TPL+ A G+ D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA- 190
Query: 224 DILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSI 263
+LL K A++ + A + ++ K L++ +
Sbjct: 191 -VLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNVV 229
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 311 PLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNL 370
PLH A + VQEL+ S PS D G H+++ + LL NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 371 VNEKNDDGNTPLLEHAGSGSL 391
+ +D G TP G+L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNL 85
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 81/194 (41%), Gaps = 10/194 (5%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKS---- 231
LH+A N+ V+ L PSL + G PL+ + ++T +L ++
Sbjct: 6 LHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLD 65
Query: 232 --PADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNV 289
P D G T H A + E+ K L D + +K QG LHLA ++ V
Sbjct: 66 DYPDDSG---WTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 290 VKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFA 349
+ L++ S K D +IPLH AA G L ++ L S+ D +GW A
Sbjct: 123 SQFLIENGASVRIK-DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181
Query: 350 LQSGSRRTIELLLK 363
L G LL++
Sbjct: 182 LAEGHGDAAVLLVE 195
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 78/171 (45%), Gaps = 6/171 (3%)
Query: 176 LHEAARYNQIDVVKMLTK--EDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA 233
LH + + ++ L E+ +L +++G TP ++A G +V + + P
Sbjct: 40 LHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD 99
Query: 234 DHG--PMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVK 291
+ G T LH A + E+++ L+++ G D+ +PLH AA +G +++
Sbjct: 100 LNKITNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPLHRAASVGSLKLIE 157
Query: 292 ELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRG 342
L KSA D +G PL A +G + L+ + +LVD++G
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKG 208
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCE 336
PLH A + V+ELL + S + D +G+IPLH + + + + ++S +
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS-FQAHEITSFLLSKMENVN 63
Query: 337 L---VDDRGWNVFHFALQSGSRRTIELLLKSP 365
L DD GW FH A G+ ++ L P
Sbjct: 64 LDDYPDDSGWTPFHIACSVGNLEVVKSLYDRP 95
Score = 33.1 bits (74), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 62/160 (38%), Gaps = 21/160 (13%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQND-PEKGVEAVRLMQG--------------- 166
G T HIA G+ +VVK L KP N +GV + L G
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGA 131
Query: 167 ---MTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQ 223
+ ++ LH AA + ++++L S + G TPL+ A G+ D
Sbjct: 132 SVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAA- 190
Query: 224 DILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSI 263
+LL K A++ + A + ++ K L++ +
Sbjct: 191 -VLLVEKYGAEYDLVDNKGAKAEDVALNEQVKKFFLNNVV 229
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%)
Query: 311 PLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNL 370
PLH A + VQEL+ S PS D G H+++ + LL NL
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64
Query: 371 VNEKNDDGNTPLLEHAGSGSL 391
+ +D G TP G+L
Sbjct: 65 DDYPDDSGWTPFHIACSVGNL 85
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 51/154 (33%), Positives = 72/154 (46%), Gaps = 8/154 (5%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA G D + ++ + GRT LH AA E+ +VLL + G +
Sbjct: 6 LLEAARAGQDDEVRILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRN--GADVNA 63
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
D G PLHLAA LG+ +V+ LLK AD +A D G PL+LAA G L V E+
Sbjct: 64 VDTNGTTPLHLAASLGHLEIVEVLLKYGADVNA---KDATGITPLYLAAYWGHLEIV-EV 119
Query: 328 IMSCPSSCELVDDRGWNVFHFALQSGSRRTIELL 361
++ + D G F ++ G+ E+L
Sbjct: 120 LLKHGADVNAQDKFGKTAFDISIDIGNEDLAEIL 153
Score = 47.4 bits (111), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD 340
AA G + V+ +L A+ + A D+ G+ PLH+AA G L V E+++ + VD
Sbjct: 9 AARAGQDDEVR-ILMANGADANAYDHYGRTPLHMAAAVGHLEIV-EVLLRNGADVNAVDT 66
Query: 341 RGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSL 391
G H A G +E+LLK G VN K+ G TPL A G L
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLK---YGADVNAKDATGITPLYLAAYWGHL 114
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 19/137 (13%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY 182
G T LH+AA GH ++V+ L+ +N + V AV + T LH AA
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL-------RNGAD--VNAV-------DTNGTTPLHLAASL 78
Query: 183 NQIDVVKMLTKEDPSLPYDANNA-GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRT 241
+++V++L K + +A +A G TPLY+AA G+ ++ + +L G+T
Sbjct: 79 GHLEIVEVLLKYGADV--NAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDKFGKT 136
Query: 242 ALHAAAFRNDTEMTKVL 258
A + + ++ ++L
Sbjct: 137 AFDISIDIGNEDLAEIL 153
Score = 31.6 bits (70), Expect = 1.7, Method: Composition-based stats.
Identities = 35/154 (22%), Positives = 65/154 (42%), Gaps = 40/154 (25%)
Query: 89 RMMSTFKKQSSSSEHFGRDILEMCPGL--------LLKT-------NTKGETLLHIAARH 133
R++ +++ +H+GR L M + LL+ +T G T LH+AA
Sbjct: 19 RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASL 78
Query: 134 GHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TALHEAARYNQIDVVK 189
GH ++V+ V L G AKD T L+ AA + +++V+
Sbjct: 79 GHLEIVE--------------------VLLKYGADVNAKDATGITPLYLAAYWGHLEIVE 118
Query: 190 MLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQ 223
+L K + + G+T ++ + G +D+ +
Sbjct: 119 VLLKHGADVNAQ-DKFGKTAFDISIDIGNEDLAE 151
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 50/145 (34%), Positives = 73/145 (50%), Gaps = 12/145 (8%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D G PLHLAA +G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A D G PLHLAA +G L V E+++ + D G H A +G
Sbjct: 71 ADVNA---LDFSGSTPLHLAAKRGHLEIV-EVLLKYGADVNADDTIGSTPLHLAADTGHL 126
Query: 356 RTIELLLKSPSLGNLVNEKNDDGNT 380
+E+LLK G VN ++ G T
Sbjct: 127 EIVEVLLK---YGADVNAQDKFGKT 148
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 50/154 (32%), Positives = 70/154 (45%), Gaps = 8/154 (5%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA G D + ++ G T LH AA E+ +VLL + G +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKN--GADVNA 75
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
D G PLHLAA G+ +V+ LLK AD +A D G PLHLAA G L V E+
Sbjct: 76 LDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNA---DDTIGSTPLHLAADTGHLEIV-EV 131
Query: 328 IMSCPSSCELVDDRGWNVFHFALQSGSRRTIELL 361
++ + D G F ++ +G+ E+L
Sbjct: 132 LLKYGADVNAQDKFGKTAFDISIDNGNEDLAEIL 165
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEA 179
+T G+T LH+AAR GH ++V+ L+ + G + L + + T LH A
Sbjct: 44 DTYGDTPLHLAARVGHLEIVEVLL-----------KNGADVNAL-----DFSGSTPLHLA 87
Query: 180 ARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMG 239
A+ +++V++L K + D + G TPL++AA+ G+ ++ + +L G
Sbjct: 88 AKRGHLEIVEVLLKYGADVNAD-DTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDKFG 146
Query: 240 RTALHAAAFRNDTEMTKVL 258
+TA + + ++ ++L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 58.9 bits (141), Expect = 9e-09, Method: Composition-based stats.
Identities = 44/118 (37%), Positives = 60/118 (50%), Gaps = 8/118 (6%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK--A 296
G T LH AA E+ +VLL G AD G+ PLHLAA G+ +V+ LLK A
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLLKH--GADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGA 104
Query: 297 DKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGS 354
D +A D G PLHLAA +G L V E+++ + D G F ++ +G+
Sbjct: 105 DVNA---FDMTGSTPLHLAADEGHLEIV-EVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 54/159 (33%), Positives = 78/159 (49%), Gaps = 14/159 (8%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L + +N G TPL++AA G+ ++ + +LL + D
Sbjct: 18 LLEAARAGQDDEVRILIANGADVNA-VDNTGLTPLHLAAVSGHLEIVE-VLLKHGADVDA 75
Query: 236 GPM-GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
+ G T LH AA E+ +VLL G + D G PLHLAA G+ +V+ LL
Sbjct: 76 ADVYGFTPLHLAAMTGHLEIVEVLL--KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLL 133
Query: 295 K--ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSC 331
K AD +A D GK ++ G ++L SC
Sbjct: 134 KYGADVNA---QDKFGKTAFDISIDNGN----EDLAKSC 165
Score = 57.4 bits (137), Expect = 2e-08, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 70/145 (48%), Gaps = 12/145 (8%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D G PLHLAA G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILIAN--GADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD A AD G PLHLAA G L V E+++ + D G H A G
Sbjct: 71 ADVDA---ADVYGFTPLHLAAMTGHLEIV-EVLLKYGADVNAFDMTGSTPLHLAADEGHL 126
Query: 356 RTIELLLKSPSLGNLVNEKNDDGNT 380
+E+LLK G VN ++ G T
Sbjct: 127 EIVEVLLK---YGADVNAQDKFGKT 148
Score = 37.0 bits (84), Expect = 0.038, Method: Composition-based stats.
Identities = 35/142 (24%), Positives = 61/142 (42%), Gaps = 27/142 (19%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD----TA 175
+ G T LH+AA GH ++V+ V L G +A D T
Sbjct: 44 DNTGLTPLHLAAVSGHLEIVE--------------------VLLKHGADVDAADVYGFTP 83
Query: 176 LHEAARYNQIDVVKMLTKEDPSL-PYDANNAGETPLYVAAERGYKDVTQDILLTCKSPAD 234
LH AA +++V++L K + +D G TPL++AA+ G+ ++ + +L
Sbjct: 84 LHLAAMTGHLEIVEVLLKYGADVNAFDMT--GSTPLHLAADEGHLEIVEVLLKYGADVNA 141
Query: 235 HGPMGRTALHAAAFRNDTEMTK 256
G+TA + + ++ K
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAK 163
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D+ G PLHLAA LG+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A DN G PLHLAA +G L V E+++ + D G F ++ +G+
Sbjct: 71 ADVNA---EDNFGITPLHLAAIRGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 356 RTIELLLK 363
E+L K
Sbjct: 127 DLAEILQK 134
Score = 36.2 bits (82), Expect = 0.062, Method: Composition-based stats.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 18/136 (13%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY 182
G+ LL AAR G D V+ L+A + D E G+ T LH AA+
Sbjct: 15 GKKLLE-AARAGQDDEVRILMANGADVNALD-EDGL---------------TPLHLAAQL 57
Query: 183 NQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTA 242
+++V++L K + + +N G TPL++AA RG+ ++ + +L G+TA
Sbjct: 58 GHLEIVEVLLKYGADVNAE-DNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTA 116
Query: 243 LHAAAFRNDTEMTKVL 258
+ + ++ ++L
Sbjct: 117 FDISIDNGNEDLAEIL 132
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 51/145 (35%), Positives = 71/145 (48%), Gaps = 12/145 (8%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D G PLHLAA G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A D G PLHLAA G L V E+++ + VD G H A G
Sbjct: 71 ADVNA---IDIXGSTPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 356 RTIELLLKSPSLGNLVNEKNDDGNT 380
+E+LLK G VN ++ G T
Sbjct: 127 EIVEVLLKH---GADVNAQDKFGKT 148
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 17/140 (12%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHE 178
T+ G T LH+AA +GH ++V+ L+ H D V A+ + T LH
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLLK-----HGAD----VNAIDI-------XGSTPLHL 86
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AA +++V++L K + + G+TPL++AA G+ ++ + +L
Sbjct: 87 AALIGHLEIVEVLLKHGADVN-AVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF 145
Query: 239 GRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 30/143 (20%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY 182
G+ LL AAR G D V+ L+A G + T+ + T LH AA Y
Sbjct: 15 GKKLLE-AARAGQDDEVRILMA-----------NGADV-----NATDASGLTPLHLAATY 57
Query: 183 NQIDVVKMLTKEDPSLPYDANN---AGETPLYVAAERGYKDVTQDILLTCKSPADHGPM- 238
+++V++L K D N G TPL++AA G+ ++ + +L K AD +
Sbjct: 58 GHLEIVEVLLKHGA----DVNAIDIXGSTPLHLAALIGHLEIVEVLL---KHGADVNAVD 110
Query: 239 --GRTALHAAAFRNDTEMTKVLL 259
G T LH AA E+ +VLL
Sbjct: 111 TWGDTPLHLAAIMGHLEIVEVLL 133
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D G PLHLAA G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A D G PLHLAA G L V E+++ + VD G H A G
Sbjct: 71 ADVNA---IDIMGSTPLHLAALIGHLEIV-EVLLKHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 356 RTIELLLK 363
+E+LLK
Sbjct: 127 EIVEVLLK 134
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHE 178
T+ G T LH+AA +GH ++V+ L+ H D V A+ +M T LH
Sbjct: 43 TDASGLTPLHLAATYGHLEIVEVLL-----KHGAD----VNAIDIM-------GSTPLHL 86
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
AA +++V++L K + + G+TPL++AA G+ ++ + +L
Sbjct: 87 AALIGHLEIVEVLLKHGADVNA-VDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDKF 145
Query: 239 GRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 136 ADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKED 195
+D+ K L+ E + Q+D + + A T+ + T LH AA Y +++V++L K
Sbjct: 12 SDLGKKLL-EAARAGQDDEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHG 70
Query: 196 PSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM---GRTALHAAAFRNDT 252
+ + G TPL++AA G+ ++ + +L K AD + G T LH AA
Sbjct: 71 ADVNA-IDIMGSTPLHLAALIGHLEIVEVLL---KHGADVNAVDTWGDTPLHLAAIMGHL 126
Query: 253 EMTKVLL 259
E+ +VLL
Sbjct: 127 EIVEVLL 133
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 67/128 (52%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D++G PLHLAA + +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILM--ANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A DN+G PLHLAA G L V E+++ + D G F ++ +G+
Sbjct: 71 ADVNAH---DNDGSTPLHLAALFGHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 356 RTIELLLK 363
E+L K
Sbjct: 127 DLAEILQK 134
Score = 37.4 bits (85), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 178 EAARYNQIDVVKMLTKEDPSLPYDANN-AGETPLYVAAERGYKDVTQDILLTCKSPADHG 236
EAAR Q D V++L + +AN+ G TPL++AA+ + ++ + +L H
Sbjct: 20 EAARAGQDDEVRILMANGADV--NANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 237 PMGRTALHAAAFRNDTEMTKVLL 259
G T LH AA E+ +VLL
Sbjct: 78 NDGSTPLHLAALFGHLEIVEVLL 100
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 22/116 (18%)
Query: 111 MCPGLLLKTNT-KGETLLHIAARHGHADVVKDLIAECK--KPHQNDPEKGVEAVRLMQGM 167
M G + N KG T LH+AA + H ++V+ L+ H ND
Sbjct: 34 MANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGS------------ 81
Query: 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQ 223
T LH AA + +++V++L K + + G+T ++ + G +D+ +
Sbjct: 82 ------TPLHLAALFGHLEIVEVLLKHGADVNA-QDKFGKTAFDISIDNGNEDLAE 130
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 66/128 (51%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L A D E+ ++L+ + G + D G PLHLAA G+ +V+ LLK
Sbjct: 14 LGKKLLEATRAGQDDEV-RILM--ANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A +D+ G+ PLHLAA G L V E+++ + D G F ++ +G+
Sbjct: 71 ADVNA---SDSWGRTPLHLAATVGHLEIV-EVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 356 RTIELLLK 363
E+L K
Sbjct: 127 DLAEILQK 134
Score = 42.4 bits (98), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EA R Q D V++L + ++AG TPL++AA+RG+ ++ + +L
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLD 260
GRT LH AA E+ +VLL+
Sbjct: 77 DSWGRTPLHLAATVGHLEIVEVLLE 101
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 169 NEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLT 228
++A T LH AA+ +++V++L K + +++ G TPL++AA G+ ++ + +L
Sbjct: 44 DDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA-SDSWGRTPLHLAATVGHLEIVEVLLEY 102
Query: 229 CKSPADHGPMGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 103 GADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L A D E+ ++L+ + G + D G PLHLAA G+ +V+ LLK
Sbjct: 14 LGKKLLEATRAGQDDEV-RILMAN--GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A +D G+ PLHLAA G L V E+++ + D G F ++ +G+
Sbjct: 71 ADVNA---SDIWGRTPLHLAATVGHLEIV-EVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 356 RTIELLLK 363
E+L K
Sbjct: 127 DLAEILQK 134
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EA R Q D V++L + ++AG TPL++AA+RG+ ++ + +L
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAS 76
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQG 274
GRT LH AA E+ +VLL+ G + D+ G
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLE--YGADVNAQDKFG 113
Score = 33.1 bits (74), Expect = 0.58, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 136 ADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKED 195
+D+ K L+ E + Q+D + + A ++A T LH AA+ +++V++L K
Sbjct: 12 SDLGKKLL-EATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 196 PSLPYDANNA---GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDT 252
D N + G TPL++AA G+ ++ + +L G+TA + +
Sbjct: 71 A----DVNASDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 253 EMTKVL 258
++ ++L
Sbjct: 127 DLAEIL 132
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 65/128 (50%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L ++ G + D G PLHLAA LG+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RIL--TANGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A N G+ PLHLAA L V E+++ + D G F ++ +G+
Sbjct: 71 ADVNAT---GNTGRTPLHLAAWADHLEIV-EVLLKHGADVNAQDKFGKTAFDISIDNGNE 126
Query: 356 RTIELLLK 363
E+L K
Sbjct: 127 DLAEILQK 134
Score = 46.2 bits (108), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNA-GETPLYVAAERGYKDVTQDILLTCKSPAD 234
L EAAR Q D V++LT + +AN+ G TPL++AA G+ ++ + +L
Sbjct: 18 LLEAARAGQDDEVRILTANGADV--NANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNA 75
Query: 235 HGPMGRTALHAAAFRNDTEMTKVLL 259
G GRT LH AA+ + E+ +VLL
Sbjct: 76 TGNTGRTPLHLAAWADHLEIVEVLL 100
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 87/211 (41%), Gaps = 38/211 (18%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
G TALH A ++ +M K L+++ G ++ D +GW+PLH AA GY ++ E L +
Sbjct: 73 GLTALHQACIDDNVDMVKFLVEN--GANINQPDNEGWIPLHAAASCGYLDIA-EYLISQG 129
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCE----------LVDDRGW----- 343
+ ++EG PL +A + +Q + E L D R W
Sbjct: 130 AHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH 189
Query: 344 -----------NVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGS-- 390
H A G ++LL+++ VN K+ DG TPL A G
Sbjct: 190 INDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY---DVNIKDYDGWTPLHAAAHWGKEE 246
Query: 391 ----LIPSFVCHPKVDRLAFNQNNCSAEDII 417
L+ + V+++ + + EDI+
Sbjct: 247 ACRILVENLCDMEAVNKVGQTAFDVADEDIL 277
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 77/204 (37%), Gaps = 46/204 (22%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHE 178
N G T LH A + D+VK L+ +Q D E + LH
Sbjct: 69 ANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWI----------------PLHA 112
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAA-------------------ERGYK 219
AA +D+ + L + + N+ G+TPL +A E K
Sbjct: 113 AASCGYLDIAEYLISQGAHVGA-VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARK 171
Query: 220 DVTQDILLTCK--------SPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKAD 271
+ + +L + + H G TALH AA + TE+ K+L+ + D
Sbjct: 172 EEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIK--D 229
Query: 272 QQGWLPLHLAAHLGYYNVVKELLK 295
GW PLH AAH G + L++
Sbjct: 230 YDGWTPLHAAAHWGKEEACRILVE 253
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 42/128 (32%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L A D E+ ++L+ + G + D G PLHLAA G+ +V+ LLK
Sbjct: 14 LGKKLLEATRAGQDDEV-RILMAN--GADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A D G+ PLHLAA G L V E+++ + D G F ++ +G+
Sbjct: 71 ADVNA---RDIWGRTPLHLAATVGHLEIV-EVLLEYGADVNAQDKFGKTAFDISIDNGNE 126
Query: 356 RTIELLLK 363
E+L K
Sbjct: 127 DLAEILQK 134
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 3/99 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EA R Q D V++L + ++AG TPL++AA+RG+ ++ + +L
Sbjct: 18 LLEATRAGQDDEVRILMANGADVNA-MDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNAR 76
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQG 274
GRT LH AA E+ +VLL+ G + D+ G
Sbjct: 77 DIWGRTPLHLAATVGHLEIVEVLLE--YGADVNAQDKFG 113
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 29/124 (23%), Positives = 61/124 (49%), Gaps = 4/124 (3%)
Query: 136 ADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKED 195
+D+ K L+ E + Q+D + + A ++A T LH AA+ +++V++L K
Sbjct: 12 SDLGKKLL-EATRAGQDDEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHG 70
Query: 196 PSLPYDANNA-GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEM 254
+ +A + G TPL++AA G+ ++ + +L G+TA + + ++
Sbjct: 71 ADV--NARDIWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Query: 255 TKVL 258
++L
Sbjct: 129 AEIL 132
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA RG + +L + GRTAL N ++LL G
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR---GANPDL 65
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329
D+ G+ +H AA G+ + ++ LL+ + DNEG +PLHLAA +G L V+ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 330 SCPSSCELVDDRGWNVFHFALQSGSRRTIELL 361
S+ + +G A G + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 163 LMQGMTNEAKD----TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGY 218
L++G + KD +H+AAR +D ++ L + + + +N G PL++AA+ G+
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 219 KDVTQDILLTCKSPADH-GPMGRTALHAAAFRNDTEMTKVLLDSSIG 264
V + ++ S H G TA A E+ ++ + G
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 4/152 (2%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA RG + +L + GRTAL N ++LL G
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR---GANPDL 65
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329
D+ G+ +H AA G+ + ++ LL+ +++ DNEG +PLHLAA +G L V+ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLE-NQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 330 SCPSSCELVDDRGWNVFHFALQSGSRRTIELL 361
S+ + +G A G + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 163 LMQGMTNEAKD----TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGY 218
L++G + KD +H+AAR +D ++ L + + + +N G PL++AA+ G+
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLENQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 219 KDVTQDILLTCKSPADH-GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTS 268
V + ++ S H G TA A E+ ++ + G T+
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATN 166
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 4/152 (2%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA RG + +L + GRTAL N ++LL G
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR---GANPDL 65
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329
D+ G+ +H AA G+ + ++ LL+ + DNEG +PLHLAA +G L V+ L+
Sbjct: 66 KDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 330 SCPSSCELVDDRGWNVFHFALQSGSRRTIELL 361
S+ + +G A G + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 30.4 bits (67), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 163 LMQGMTNEAKD----TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGY 218
L++G + KD +H+AAR +D ++ L + + + +N G PL++AA+ G+
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 219 KDVTQDILLTCKSPADH-GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTS 268
V + ++ S H G TA A E+ ++ + G T+
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATN 166
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 49.3 bits (116), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 10/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKA- 296
+G+ L AA D E+ ++ + + T D G PLHLAA G+++ + LL+A
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT----TDWLGTSPLHLAAQYGHFSTTEVLLRAG 57
Query: 297 -DKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
+ A K D + PLH+AA +G N V E+++ + D H+A + +
Sbjct: 58 VSRDARTKVD---RTPLHMAASEGHANIV-EVLLKHGADVNAKDMLKMTALHWATEHNHQ 113
Query: 356 RTIELLLK 363
+ELL+K
Sbjct: 114 EVVELLIK 121
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 4/120 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L P+ + G +PL++AA+ G+ T+ +L S
Sbjct: 6 LLEAARAGQDDEVRILMAN--GAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDAR 63
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
+ RT LH AA + +VLL G + D LH A + VV+ L+K
Sbjct: 64 TKVDRTPLHMAASEGHANIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 25/96 (26%)
Query: 103 HFGRDILEMCPGLLLKTNTK-GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAV 161
HF + + G+ TK T LH+AA GHA++V+ V
Sbjct: 46 HFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVE--------------------V 85
Query: 162 RLMQGMTNEAKD----TALHEAARYNQIDVVKMLTK 193
L G AKD TALH A +N +VV++L K
Sbjct: 86 LLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIK 121
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 75/155 (48%), Gaps = 8/155 (5%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAA--HLGYYNVVKELLKA 296
G TALH + + + + LLDS + + K ++ G+ P+ L A L + ++ +L+
Sbjct: 111 GNTALHYSVSHANFPVVQQLLDSGV-CKVDKQNRAGYSPIMLTALATLKTQDDIETVLQL 169
Query: 297 DK--SAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGS 354
+ + KA G+ L LA GR++ V+ L ++C + + DD G A + G
Sbjct: 170 FRLGNINAKASQAGQTALMLAVSHGRVDVVKAL-LACEADVNVQDDDGSTALMCACEHGH 228
Query: 355 RRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSG 389
+ LLL PS ++ + DG+T L+ +G
Sbjct: 229 KEIAGLLLAVPSCD--ISLTDRDGSTALMVALDAG 261
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 70/170 (41%), Gaps = 39/170 (22%)
Query: 120 NTKGETLLHIAARHGHADVVKDLI--AECKKPHQN-------------------DPEKGV 158
++ G T LH + H + VV+ L+ CK QN D E +
Sbjct: 108 DSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVL 167
Query: 159 EAVRL--MQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAER 216
+ RL + ++A TAL A + ++DVVK L + + ++ G T L A E
Sbjct: 168 QLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQ-DDDGSTALMCACEH 226
Query: 217 GYKDV--------TQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVL 258
G+K++ + DI LT + G TAL A +E+ +L
Sbjct: 227 GHKEIAGLLLAVPSCDISLTDRD-------GSTALMVALDAGQSEIASML 269
Score = 28.9 bits (63), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 118 KTNTKGETLLHIAARHGHADVVKDLIA 144
K + G+T L +A HG DVVK L+A
Sbjct: 178 KASQAGQTALMLAVSHGRVDVVKALLA 204
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 45/90 (50%), Gaps = 3/90 (3%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
G T LH A+ + D + LL + G+ + D GW PLH A + G+ VV ELL K
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQN--GSDPNVKDHAGWTPLHEACNHGHLKVV-ELLLQHK 66
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
+ + PLH AA G ++ V+ L+
Sbjct: 67 ALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 63/141 (44%), Gaps = 20/141 (14%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHE 178
TN +GETLLHIA+ G V+ L+ P+ D A T LHE
Sbjct: 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKD----------------HAGWTPLHE 49
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
A + + VV++L + +L ++PL+ AA+ G+ D+ + +LL+ A +
Sbjct: 50 ACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHDAAKNGHVDIVK-LLLSYG--ASRNAV 105
Query: 239 GRTALHAAAFRNDTEMTKVLL 259
L + +D M +LL
Sbjct: 106 NIFGLRPVDYTDDESMKSLLL 126
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 305 DNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364
++ G+ LH+A+ KG + +V+ L+ + S + D GW H A G + +ELLL+
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQH 65
Query: 365 PSLGNLVNEKNDDGNTPLLEHAGSG 389
+L N +ND +PL + A +G
Sbjct: 66 KALVNTTGYQND---SPLHDAAKNG 87
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 4/152 (2%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA RG + +L + GRTAL N ++LL G
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR---GANPDL 65
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329
D+ G +H AA G+ + ++ LL+ + DNEG +PLHLAA +G L V+ L+
Sbjct: 66 KDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 330 SCPSSCELVDDRGWNVFHFALQSGSRRTIELL 361
S+ + +G A G + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 30.0 bits (66), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 6/111 (5%)
Query: 163 LMQGMTNEAKD----TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGY 218
L++G + KD +H+AAR +D ++ L + + + +N G PL++AA+ G+
Sbjct: 57 LLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 219 KDVTQDILLTCKSPADH-GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTS 268
V + ++ S H G TA A E+ ++ + G T+
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATN 166
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 4/152 (2%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA RG + +L + GRTAL N ++LL G
Sbjct: 9 LASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNPEIARRLLLR---GANPDL 65
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329
D+ G+ +H AA G + ++ LL+ + DNEG +PLHLAA +G L V+ L+
Sbjct: 66 KDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGHLRVVEFLVK 124
Query: 330 SCPSSCELVDDRGWNVFHFALQSGSRRTIELL 361
S+ + +G A G + L+
Sbjct: 125 HTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 52/111 (46%), Gaps = 6/111 (5%)
Query: 163 LMQGMTNEAKD----TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGY 218
L++G + KD +H+AAR Q+D ++ L + + + +N G PL++AA+ G+
Sbjct: 57 LLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVNIE-DNEGNLPLHLAAKEGH 115
Query: 219 KDVTQDILLTCKSPADH-GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTS 268
V + ++ S H G TA A E+ ++ + G T+
Sbjct: 116 LRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAGGATN 166
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
G + LH AA ++ +LL ADQ +PLHLA G++ VVK LL ++
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNADQA--VPLHLACQQGHFQVVKCLLDSN- 142
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
+ K D G PL A G V L++ +S +++G H A+ +
Sbjct: 143 AKPNKKDLSGNTPLIYACSGGHHELVA-LLLQHGASINASNNKGNTALHEAVIEKHVFVV 201
Query: 359 ELLL 362
ELLL
Sbjct: 202 ELLL 205
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)
Query: 272 QQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSC 331
Q G PLH+AA G +++ LLK +A + ++ +PLHLA +G V+ L+ S
Sbjct: 84 QDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQA-VPLHLACQQGHFQVVKCLLDSN 142
Query: 332 --PSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLE 384
P+ +L G +A G + LLL+ G +N N+ GNT L E
Sbjct: 143 AKPNKKDL---SGNTPLIYACSGGHHELVALLLQH---GASINASNNKGNTALHE 191
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 59/141 (41%), Gaps = 17/141 (12%)
Query: 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHE 178
T+ G + LH+AA HG AD++ L+ + G A G N + LH
Sbjct: 82 TSQDGSSPLHVAALHGRADLIPLLL-----------KHGANA-----GARNADQAVPLHL 125
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM 238
A + VVK L + + P + +G TPL A G+ ++ +L S
Sbjct: 126 ACQQGHFQVVKCLLDSN-AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNK 184
Query: 239 GRTALHAAAFRNDTEMTKVLL 259
G TALH A + ++LL
Sbjct: 185 GNTALHEAVIEKHVFVVELLL 205
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 307 EGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPS 366
+G PLH+AA GR + + L+ ++ D+ H A Q G + ++ LL S +
Sbjct: 85 DGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVP-LHLACQQGHFQVVKCLLDSNA 143
Query: 367 LGNLVNEKNDDGNTPLLEHAGSG 389
N +K+ GNTPL+ +A SG
Sbjct: 144 KPN---KKDLSGNTPLI-YACSG 162
Score = 32.3 bits (72), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 8/155 (5%)
Query: 143 IAECKK--PHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPY 200
+ +C K P Q K V A L +T++ + LH AA + + D++ +L K +
Sbjct: 56 LCQCPKCAPAQKRLAK-VPASGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN--A 112
Query: 201 DANNAGE-TPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLL 259
A NA + PL++A ++G+ V + +L + P G T L A E+ +LL
Sbjct: 113 GARNADQAVPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLL 172
Query: 260 DSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
G + ++ +G LH A + VV+ LL
Sbjct: 173 QH--GASINASNNKGNTALHEAVIEKHVFVVELLL 205
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 217 GYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276
G D+ Q I+ P+ G TALH A TE+ K L+ G + AD GW
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAADSDGWT 105
Query: 277 PLHLAAHLGYYNVVKELLKA 296
PLH AA V K L+++
Sbjct: 106 PLHCAASCNNVQVCKFLVES 125
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 217 GYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276
G D+ Q I+ P+ G TALH A TE+ K L+ G + AD GW
Sbjct: 48 GEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV--QFGVNVNAADSDGWT 105
Query: 277 PLHLAAHLGYYNVVKELLKA 296
PLH AA V K L+++
Sbjct: 106 PLHCAASCNNVQVCKFLVES 125
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 76/178 (42%), Gaps = 3/178 (1%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAA 246
V+ L + L + GET L++AA D + +L GRT LHAA
Sbjct: 32 VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAA 91
Query: 247 AFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADN 306
+ + ++LL + T + G PL LAA L +V++L+ AD ADN
Sbjct: 92 VAADAMGVFQILL-RNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD-INAADN 149
Query: 307 EGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364
GK LH AA V L+M ++ + DD+ A + GS + LL +
Sbjct: 150 SGKTALHWAAAVNNTEAVNILLMHH-ANRDAQDDKDETPLFLAAREGSYEASKALLDN 206
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 81/201 (40%), Gaps = 18/201 (8%)
Query: 94 FKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQND 153
+ S+ D+L L + GET LH+AAR AD K L+
Sbjct: 22 IENNEDSTAQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLL---------- 71
Query: 154 PEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVA 213
+ G +A N + T LH A + + V ++L + + + G TPL +A
Sbjct: 72 -DAGADA----NSQDNTGR-TPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA 125
Query: 214 AERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQ 273
A + + +D++ G+TALH AA N+TE +LL D +
Sbjct: 126 ARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQ--DDK 183
Query: 274 GWLPLHLAAHLGYYNVVKELL 294
PL LAA G Y K LL
Sbjct: 184 DETPLFLAAREGSYEASKALL 204
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/128 (31%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK-- 295
+G+ L AA D E+ ++L+ + G + D+ G PL+LA G+ +V+ LLK
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMAN--GADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNG 70
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355
AD +A D G PLHLAA G L + E+++ + D G F ++ +G+
Sbjct: 71 ADVNAV---DAIGFTPLHLAAFIGHLE-IAEVLLKHGADVNAQDKFGKTAFDISIGNGNE 126
Query: 356 RTIELLLK 363
E+L K
Sbjct: 127 DLAEILQK 134
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 28/84 (33%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L + + G TPLY+A G+ ++ + +L
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV 76
Query: 236 GPMGRTALHAAAFRNDTEMTKVLL 259
+G T LH AAF E+ +VLL
Sbjct: 77 DAIGFTPLHLAAFIGHLEIAEVLL 100
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 18/221 (8%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L +A + +D+V+ L + ++ + G TPL+ A + +D+ + +L P
Sbjct: 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 68
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
G T AA ++ K+ L S G ++ D G+ AA G +K L K
Sbjct: 69 KKNGATPFLLAAIAGSVKLLKLFL--SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126
Query: 296 ADKSA----AYKADNE-----GKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVF 346
+ K D E G L AA KG + ++ L+ + D+ G N
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186
Query: 347 HFALQSGSRRTIE----LLLKSPSLGNLVNEKNDDGNTPLL 383
AL S +E LLL G VN + + G TPL+
Sbjct: 187 IHALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLI 224
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L AA + V+ L + P N G+T L V G V ++L SP
Sbjct: 14 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQ 72
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
G + +H AA + KVL++ G + D G LP+HLA G+ +VV L
Sbjct: 73 DASGTSPVHDAARTGFLDTLKVLVEH--GADVNALDSTGSLPIHLAIREGHSSVVSFL-- 128
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLN 322
A +S + D G PL LA +G N
Sbjct: 129 APESDLHHRDASGLTPLELARQRGAQN 155
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/147 (30%), Positives = 63/147 (42%), Gaps = 5/147 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L AA + V+ L + P N G+T L V G V ++L SP
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSPAVALELLKQGASPNVQ 70
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
G + +H AA + KVL++ G + D G LP+HLA G+ +VV L
Sbjct: 71 DASGTSPVHDAARTGFLDTLKVLVEH--GADVNALDSTGSLPIHLAIREGHSSVVSFL-- 126
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLN 322
A +S + D G PL LA +G N
Sbjct: 127 APESDLHHRDASGLTPLELARQRGAQN 153
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/221 (25%), Positives = 89/221 (40%), Gaps = 18/221 (8%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L +A + +D+V+ L + ++ + G TPL+ A + +D+ + +L P
Sbjct: 29 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLR 88
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
G T AA ++ K+ L S G ++ D G+ AA G +K L K
Sbjct: 89 KKNGATPFILAAIAGSVKLLKLFL--SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 146
Query: 296 ADKSA----AYKADNE-----GKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVF 346
+ K D E G L AA KG + ++ L+ + D+ G N
Sbjct: 147 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 206
Query: 347 HFALQSGSRRTIE----LLLKSPSLGNLVNEKNDDGNTPLL 383
AL S +E LLL G VN + + G TPL+
Sbjct: 207 IHALLSSDDSDVEAITHLLLDH---GADVNVRGERGKTPLI 244
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L AA + V+ L + P N G+T L V G + ++L SP
Sbjct: 12 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ 70
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
G + +H AA + KVL++ G + D G LP+HLA G+ VV L
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFL-- 126
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
A +S ++ D G PL LA +G + V L
Sbjct: 127 AAESDLHRRDARGLTPLELALQRGAQDLVDIL 158
Score = 29.3 bits (64), Expect = 7.9, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEA 179
+T G + +H AAR G D +K L+ E G + + + +H A
Sbjct: 71 DTSGTSPVHDAARTGFLDTLKVLV-----------EHGADV-----NVPDGTGALPIHLA 114
Query: 180 ARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDIL 226
+ VV L E DA G TPL +A +RG +D+ DIL
Sbjct: 115 VQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGAQDLV-DIL 158
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/152 (29%), Positives = 65/152 (42%), Gaps = 5/152 (3%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L AA + V+ L + P N G+T L V G + ++L SP
Sbjct: 6 LSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQ 64
Query: 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK 295
G + +H AA + KVL++ G + D G LP+HLA G+ VV L
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFL-- 120
Query: 296 ADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
A +S ++ D G PL LA +G + V L
Sbjct: 121 AAESDLHRRDARGLTPLELALQRGAQDLVDIL 152
Score = 29.3 bits (64), Expect = 8.3, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 19/107 (17%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEA 179
+T G + +H AAR G D +K L+ E G + + + +H A
Sbjct: 65 DTSGTSPVHDAARTGFLDTLKVLV-----------EHGADV-----NVPDGTGALPIHLA 108
Query: 180 ARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDIL 226
+ VV L E DA G TPL +A +RG +D+ DIL
Sbjct: 109 VQEGHTAVVSFLAAESDLHRRDAR--GLTPLELALQRGAQDLV-DIL 152
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
G TALH AA + ++ K LL++S D G PLH A V + LL+
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQ--DNMGRTPLHAAVSADAQGVFQILLRNRA 79
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
+ ++G PL LAA +++LI S + VDD G + H+A +
Sbjct: 80 TDLDARMHDGTTPLILAARLALEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAA 138
Query: 359 ELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGS 390
+LLK+ + ++ N K + TPL A GS
Sbjct: 139 VVLLKNGANKDMQNNKEE---TPLFLAAREGS 167
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 6/129 (4%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAA 246
V+ + SL + GET L++AA D + +L MGRT LHAA
Sbjct: 3 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAA 62
Query: 247 AFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKA 304
+ + ++LL + T G PL LAA L ++++L+ AD +A
Sbjct: 63 VSADAQGVFQILL-RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNA---V 118
Query: 305 DNEGKIPLH 313
D+ GK LH
Sbjct: 119 DDLGKSALH 127
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 118 KTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALH 177
+T+ GET LH+AAR+ +D K L+ E +A + + T LH
Sbjct: 17 QTDRTGETALHLAARYSRSDAAKRLL-----------EASADAX-----IQDNMGRTPLH 60
Query: 178 EAARYNQIDVVKMLTKEDPSLPYDAN-NAGETPLYVAAERGYKDVTQDILLTCKSPADHG 236
A + V ++L + + + DA + G TPL +AA + + +D++ +
Sbjct: 61 AAVSADAQGVFQILLR-NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVD 119
Query: 237 PMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
+G++ALH AA N+ + VLL + G + + PL LAA G Y K LL
Sbjct: 120 DLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNKEETPLFLAAREGSYETAKVLL 175
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 75/167 (44%), Gaps = 7/167 (4%)
Query: 164 MQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQ 223
+ T+ +TALH AARY++ D K L + +N G TPL+ A + V Q
Sbjct: 14 LHNQTDRTGETALHLAARYSRSDAAKRLLEASADAXI-QDNMGRTPLHAAVSADAQGVFQ 72
Query: 224 DILLTCKSPADHGPM--GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLA 281
ILL ++ M G T L AA M + L++S + D G LH A
Sbjct: 73 -ILLRNRATDLDARMHDGTTPLILAARLALEGMLEDLINSH--ADVNAVDDLGKSALHWA 129
Query: 282 AHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
A + + LLK + + +N+ + PL LAA +G T + L+
Sbjct: 130 AAVNNVDAAVVLLKNGANKDMQ-NNKEETPLFLAAREGSYETAKVLL 175
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/96 (22%), Positives = 47/96 (48%), Gaps = 3/96 (3%)
Query: 288 NVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFH 347
+V+ + + S + D G+ LHLAA R + + L + + + D+ G H
Sbjct: 2 SVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRL-LEASADAXIQDNMGRTPLH 60
Query: 348 FALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLL 383
A+ + ++ ++LL++ + ++ + DG TPL+
Sbjct: 61 AAVSADAQGVFQILLRNRATD--LDARMHDGTTPLI 94
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 7/151 (4%)
Query: 166 GMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDI 225
M N D L EAA+ ++ VK L D TPL+ AA V + +
Sbjct: 2 AMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61
Query: 226 LLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLG 285
L G LH A E+ ++L+ G + AD + PLH AA G
Sbjct: 62 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKG 119
Query: 286 YYNVVKELLK--ADKSAAYKADNEGKIPLHL 314
Y + K LL+ AD + K + +G PL L
Sbjct: 120 KYEICKLLLQHGADPT---KKNRDGNTPLDL 147
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 48/152 (31%), Positives = 64/152 (42%), Gaps = 12/152 (7%)
Query: 236 GPMGRT----ALHAAAFRNDTEMTKVLLD-SSIGTQTSKADQQGWLPLHLAAHLGYYNVV 290
G MG + L AA D E K L S+ + + Q PLH AA +VV
Sbjct: 1 GAMGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQS--TPLHFAAGYNRVSVV 58
Query: 291 KELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFAL 350
+ LL+ K D G +PLH A G V EL++ + + D + H A
Sbjct: 59 EYLLQHGADVHAK-DKGGLVPLHNACSYGHYE-VAELLVKHGAVVNVADLWKFTPLHEAA 116
Query: 351 QSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
G +LLL+ G +KN DGNTPL
Sbjct: 117 AKGKYEICKLLLQH---GADPTKKNRDGNTPL 145
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 38/122 (31%), Positives = 50/122 (40%), Gaps = 8/122 (6%)
Query: 268 SKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
S+AD+Q L AA G VK+L + PLH AAG R++ V E
Sbjct: 6 SEADRQ----LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVV-EY 60
Query: 328 IMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAG 387
++ + D G H A G ELL+K G +VN + TPL E A
Sbjct: 61 LLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPLHEAAA 117
Query: 388 SG 389
G
Sbjct: 118 KG 119
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 44/151 (29%), Positives = 61/151 (40%), Gaps = 7/151 (4%)
Query: 166 GMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDI 225
G N D L EAA+ ++ VK L D TPL+ AA V + +
Sbjct: 4 GSGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 63
Query: 226 LLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLG 285
L G LH A E+ ++L+ G + AD + PLH AA G
Sbjct: 64 LQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKG 121
Query: 286 YYNVVKELLK--ADKSAAYKADNEGKIPLHL 314
Y + K LL+ AD + K + +G PL L
Sbjct: 122 KYEICKLLLQHGADPT---KKNRDGNTPLDL 149
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCE 336
PLH AA +VV+ LL+ K D G +PLH A G V EL++ +
Sbjct: 47 PLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYE-VAELLVKHGAVVN 104
Query: 337 LVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
+ D + H A G +LLL+ G +KN DGNTPL
Sbjct: 105 VADLWKFTPLHEAAAKGKYEICKLLLQH---GADPTKKNRDGNTPL 147
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 39/128 (30%), Positives = 54/128 (42%), Gaps = 8/128 (6%)
Query: 262 SIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRL 321
++G+ S+AD+Q L AA G VK+L + PLH AAG R+
Sbjct: 2 AMGSGNSEADRQ----LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRV 57
Query: 322 NTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTP 381
+ V E ++ + D G H A G ELL+K G +VN + TP
Sbjct: 58 SVV-EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTP 113
Query: 382 LLEHAGSG 389
L E A G
Sbjct: 114 LHEAAAKG 121
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 36/106 (33%), Positives = 48/106 (45%), Gaps = 5/106 (4%)
Query: 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCE 336
PLH AA +VV+ LL+ K D G +PLH A G V EL++ +
Sbjct: 49 PLHFAAGYNRVSVVEYLLQHGADVHAK-DKGGLVPLHNACSYGHYE-VAELLVKHGAVVN 106
Query: 337 LVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
+ D + H A G +LLL+ G +KN DGNTPL
Sbjct: 107 VADLWKFTPLHEAAAKGKYEICKLLLQH---GADPTKKNRDGNTPL 149
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 43/150 (28%), Positives = 61/150 (40%), Gaps = 7/150 (4%)
Query: 167 MTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDIL 226
+ N D L EAA+ ++ VK L D TPL+ AA V + +L
Sbjct: 7 LGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLL 66
Query: 227 LTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGY 286
G LH A E+ ++L+ G + AD + PLH AA G
Sbjct: 67 QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGK 124
Query: 287 YNVVKELLK--ADKSAAYKADNEGKIPLHL 314
Y + K LL+ AD + K + +G PL L
Sbjct: 125 YEICKLLLQHGADPT---KKNRDGNTPLDL 151
Score = 37.7 bits (86), Expect = 0.023, Method: Composition-based stats.
Identities = 39/127 (30%), Positives = 51/127 (40%), Gaps = 8/127 (6%)
Query: 263 IGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLN 322
I S+AD+Q L AA G VK+L + PLH AAG R++
Sbjct: 5 ISLGNSEADRQ----LLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVS 60
Query: 323 TVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
V E ++ + D G H A G ELL+K G +VN + TPL
Sbjct: 61 VV-EYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH---GAVVNVADLWKFTPL 116
Query: 383 LEHAGSG 389
E A G
Sbjct: 117 HEAAAKG 123
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
G TALH AA + ++ K LL++S D G PLH A V + L++
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 82
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
+ ++G PL LAA +++LI S + VDD G + H+A +
Sbjct: 83 TDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAA 141
Query: 359 ELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGS 390
+LLK+ + ++ N + + TPL A GS
Sbjct: 142 VVLLKNGANKDMQNNREE---TPLFLAAREGS 170
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 118 KTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALH 177
+T+ GET LH+AAR+ +D K L+ E +A + + T LH
Sbjct: 20 QTDRTGETALHLAARYSRSDAAKRLL-----------EASADA-----NIQDNMGRTPLH 63
Query: 178 EAARYNQIDVVKMLTKEDPSLPYDAN-NAGETPLYVAAERGYKDVTQDILLTCKSPADHG 236
A + V ++L + + + DA + G TPL +AA + + +D++ +
Sbjct: 64 AAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 122
Query: 237 PMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
+G++ALH AA N+ + VLL + G + + PL LAA G Y K LL
Sbjct: 123 DLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLL 178
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 7/178 (3%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAA 246
V+ + SL + GET L++AA D + +L MGRT LHAA
Sbjct: 6 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 65
Query: 247 AFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKA 304
+ + ++L+ + T G PL LAA L ++++L+ AD +A
Sbjct: 66 VSADAQGVFQILI-RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---V 121
Query: 305 DNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLL 362
D+ GK LH AA ++ L+ + ++ ++ ++R A + GS T ++LL
Sbjct: 122 DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL 178
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 164 MQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDAN---NAGETPLYVAAERGYKD 220
+ T+ +TALH AARY++ D K L + DAN N G TPL+ A +
Sbjct: 17 LHNQTDRTGETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADAQG 72
Query: 221 VTQDILLTCKSPADHGPM--GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278
V Q IL+ ++ M G T L AA M + L++S + D G L
Sbjct: 73 VFQ-ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDLGKSAL 129
Query: 279 HLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
H AA + + LLK + + +N + PL LAA +G T + L+
Sbjct: 130 HWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLL 178
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
G TALH AA + ++ K LL++S D G PLH A V + L++
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
+ ++G PL LAA +++LI S + VDD G + H+A +
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 359 ELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGS 390
+LLK+ + ++ N + + TPL A GS
Sbjct: 174 VVLLKNGANKDMQNNREE---TPLFLAAREGS 202
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 118 KTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALH 177
+T+ GET LH+AAR+ +D K L+ E +A + + T LH
Sbjct: 52 QTDRTGETALHLAARYSRSDAAKRLL-----------EASADA-----NIQDNMGRTPLH 95
Query: 178 EAARYNQIDVVKMLTKEDPSLPYDAN-NAGETPLYVAAERGYKDVTQDILLTCKSPADHG 236
A + V ++L + + + DA + G TPL +AA + + +D++ +
Sbjct: 96 AAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 154
Query: 237 PMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
+G++ALH AA N+ + VLL + G + + PL LAA G Y K LL
Sbjct: 155 DLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 7/178 (3%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAA 246
V+ + SL + GET L++AA D + +L MGRT LHAA
Sbjct: 38 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 247 AFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKA 304
+ + ++L+ + T G PL LAA L ++++L+ AD +A
Sbjct: 98 VSADAQGVFQILI-RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---V 153
Query: 305 DNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLL 362
D+ GK LH AA ++ L+ + ++ ++ ++R A + GS T ++LL
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL 210
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 164 MQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDAN---NAGETPLYVAAERGYKD 220
+ T+ +TALH AARY++ D K L + DAN N G TPL+ A +
Sbjct: 49 LHNQTDRTGETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADAQG 104
Query: 221 VTQDILLTCKSPADHGPM--GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278
V Q IL+ ++ M G T L AA M + L++S + D G L
Sbjct: 105 VFQ-ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDLGKSAL 161
Query: 279 HLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
H AA + + LLK + + +N + PL LAA +G T + L+
Sbjct: 162 HWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLL 210
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/107 (35%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK--A 296
G T LH AA E K LL S G + + G PLHLAA G+ +VK LL A
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLL--SKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 297 DKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGW 343
D +A K +G P HLA + N E++ + V+ R W
Sbjct: 67 DVNARSK---DGNTPEHLA----KKNGHHEIVKLLDAKGADVNARSW 106
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
Query: 206 GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGT 265
G TPL+ AA+ G+ + + +L G T LH AA E+ K+LL + G
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL--AKGA 66
Query: 266 QTSKADQQGWLPLHLAAHLGYYNVVKEL 293
+ + G P HLA G++ +VK L
Sbjct: 67 DVNARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 21/110 (19%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEA-VRLMQGMTNEAKDTALHEAAR 181
G T LH AA++GHA+ VK L++ KG + R G +T LH AA+
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLS-----------KGADVNARSKDG------NTPLHLAAK 51
Query: 182 YNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKS 231
++VK+L + + + + G TP ++A + G+ ++ + LL K
Sbjct: 52 NGHAEIVKLLLAKGADVNARSKD-GNTPEHLAKKNGHHEIVK--LLDAKG 98
Score = 36.2 bits (82), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 4/75 (5%)
Query: 307 EGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPS 366
+G PLH AA G V++L +S + G H A ++G ++LLL +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKL-LSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL---A 63
Query: 367 LGNLVNEKNDDGNTP 381
G VN ++ DGNTP
Sbjct: 64 KGADVNARSKDGNTP 78
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Query: 173 DTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSP 232
+T LH AA+ + VK L + + + + G TPL++AA+ G+ ++ + +L
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKD-GNTPLHLAAKNGHAEIVKLLLAKGADV 68
Query: 233 ADHGPMGRTALHAAAFRNDTEMTKVL 258
G T H A E+ K+L
Sbjct: 69 NARSKDGNTPEHLAKKNGHHEIVKLL 94
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
G TALH AA + ++ K LL++S D G PLH A V + L++
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 115
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
+ ++G PL LAA +++LI S + VDD G + H+A +
Sbjct: 116 TDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAA 174
Query: 359 ELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGS 390
+LLK+ + ++ N + + TPL A GS
Sbjct: 175 VVLLKNGANKDMQNNREE---TPLFLAAREGS 203
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 50/178 (28%), Positives = 81/178 (45%), Gaps = 20/178 (11%)
Query: 118 KTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALH 177
+T+ GET LH+AAR+ +D K L+ E +A + + T LH
Sbjct: 53 QTDRTGETALHLAARYSRSDAAKRLL-----------EASADA-----NIQDNMGRTPLH 96
Query: 178 EAARYNQIDVVKMLTKEDPSLPYDAN-NAGETPLYVAAERGYKDVTQDILLTCKSPADHG 236
A + V ++L + + + DA + G TPL +AA + + +D++ +
Sbjct: 97 AAVSADAQGVFQILIR-NRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVD 155
Query: 237 PMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
+G++ALH AA N+ + VLL + G + + PL LAA G Y K LL
Sbjct: 156 DLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLL 211
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 80/178 (44%), Gaps = 7/178 (3%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAA 246
V+ + SL + GET L++AA D + +L MGRT LHAA
Sbjct: 39 VISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAA 98
Query: 247 AFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKA 304
+ + ++L+ + T G PL LAA L ++++L+ AD +A
Sbjct: 99 VSADAQGVFQILI-RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---V 154
Query: 305 DNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLL 362
D+ GK LH AA ++ L+ + ++ ++ ++R A + GS T ++LL
Sbjct: 155 DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL 211
Score = 36.6 bits (83), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 76/170 (44%), Gaps = 13/170 (7%)
Query: 164 MQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDAN---NAGETPLYVAAERGYKD 220
+ T+ +TALH AARY++ D K L + DAN N G TPL+ A +
Sbjct: 50 LHNQTDRTGETALHLAARYSRSDAAKRLLEA----SADANIQDNMGRTPLHAAVSADAQG 105
Query: 221 VTQDILLTCKSPADHGPM--GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278
V Q IL+ ++ M G T L AA M + L++S + D G L
Sbjct: 106 VFQ-ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSH--ADVNAVDDLGKSAL 162
Query: 279 HLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
H AA + + LLK + + +N + PL LAA +G T + L+
Sbjct: 163 HWAAAVNNVDAAVVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLL 211
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 6/152 (3%)
Query: 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298
G TALH AA + ++ K LL++S D G PLH A V + L++
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 299 SAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358
+ ++G PL LAA +++LI S + VDD G + H+A +
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGKSALHWAAAVNNVDAA 173
Query: 359 ELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGS 390
+LLK+ + ++ N + + TPL A GS
Sbjct: 174 VVLLKNGANKDMQNNREE---TPLFLAAREGS 202
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 79/178 (44%), Gaps = 7/178 (3%)
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAA 246
V+ + SL + G T L++AA D + +L MGRT LHAA
Sbjct: 38 VISDFIYQGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAA 97
Query: 247 AFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYKA 304
+ + ++L+ + T G PL LAA L ++++L+ AD +A
Sbjct: 98 VSADAQGVFQILI-RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA---V 153
Query: 305 DNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLL 362
D+ GK LH AA ++ L+ + ++ ++ ++R A + GS T ++LL
Sbjct: 154 DDLGKSALHWAAAVNNVDAAVVLLKNG-ANKDMQNNREETPLFLAAREGSYETAKVLL 210
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 58/135 (42%), Gaps = 6/135 (4%)
Query: 235 HGPMGR--TALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKE 292
H GR T LH AA N + ++LL G D+ G +PLH A G+Y V +
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQLLLQH--GADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Query: 293 LLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQS 352
LLK + D PLH AA K R+ V L++S + LV+ G + A
Sbjct: 110 LLK-HGACVNAMDLWQFTPLHEAASKNRVE-VCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 353 GSRRTIELLLKSPSL 367
R + K SL
Sbjct: 168 ELRERLTYEFKGHSL 182
Score = 39.3 bits (90), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 47/90 (52%), Gaps = 5/90 (5%)
Query: 172 KDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILL--TC 229
K T LH AA YN++ +V++L + + + + G PL+ A G+ +VT+ +L C
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADV-HAKDKGGLVPLHNACSYGHYEVTELLLKHGAC 116
Query: 230 KSPADHGPMGRTALHAAAFRNDTEMTKVLL 259
+ D T LH AA +N E+ +LL
Sbjct: 117 VNAMDLWQF--TPLHEAASKNRVEVCSLLL 144
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 5/125 (4%)
Query: 302 YKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELL 361
+ +D PLHLAAG R+ VQ L++ + D G H A G ELL
Sbjct: 52 HASDGRKSTPLHLAAGYNRVRIVQ-LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110
Query: 362 LKSPSLGNLVNEKNDDGNTPLLEHAGSGSL-IPSFVCHPKVDRLAFNQNNCSAEDIIRSD 420
LK G VN + TPL E A + + S + D N + SA D+ +
Sbjct: 111 LKH---GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTP 167
Query: 421 KLLFR 425
+L R
Sbjct: 168 ELRER 172
Score = 35.8 bits (81), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 78/178 (43%), Gaps = 27/178 (15%)
Query: 105 GRDILEMCPGLLLKTNT----KGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEA 160
G+ ++M P L+ KG +LL AAR VK +A +E
Sbjct: 157 GKSAVDMAPTPELRERLTYEFKGHSLLQ-AAREADLAKVKKTLA-------------LEI 202
Query: 161 VRLMQGMTNEAKDTALHEAA---RYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERG 217
+ Q ++E TALH A + V ++L ++ ++ + N TPL+VAAER
Sbjct: 203 INFKQPQSHE---TALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERA 258
Query: 218 YKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGW 275
+ DV + + +G+TALH AA + ++LL S G+ S QG+
Sbjct: 259 HNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL--SYGSDPSIISLQGF 314
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 52/127 (40%), Gaps = 4/127 (3%)
Query: 247 AFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNV-VKELLKADKSAAYKAD 305
A R+ E + L + + +D + PLHLAA GY V + +LL + + D
Sbjct: 31 AARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAA--GYNRVRIVQLLLQHGADVHAKD 88
Query: 306 NEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSP 365
G +PLH A G V EL++ + +D + H A LLL
Sbjct: 89 KGGLVPLHNACSYGHYE-VTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHG 147
Query: 366 SLGNLVN 372
+ LVN
Sbjct: 148 ADPTLVN 154
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 273 QGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCP 332
+G LH AA + +VK L+ S K D +GK P+ LAA +GR+ V LI
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQG- 336
Query: 333 SSCELVD 339
+S E VD
Sbjct: 337 ASVEAVD 343
Score = 30.0 bits (66), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 174 TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDV 221
TALH AA+ + +VK L E S + G+TP+ +AA+ G +V
Sbjct: 281 TALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEV 328
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/193 (25%), Positives = 80/193 (41%), Gaps = 24/193 (12%)
Query: 134 GHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMT----NEAKD---TALHEAARYNQID 186
G + + D+ +C+ E AVRL T N+ D + LH A R +
Sbjct: 1 GSPEFMDDIFTQCR-------EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSA 53
Query: 187 VVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAA 246
VV+ML + N +TPL++AA G++D+ Q +L G LH A
Sbjct: 54 VVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYA 112
Query: 247 AFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADN 306
F ++ + L+ + G S ++ G +P+ A ++ELL+ + A N
Sbjct: 113 CFWGQDQVAEDLV--ANGALVSICNKYGEMPVDKAK-----APLRELLR--ERAEKMGQN 163
Query: 307 EGKIPLHLAAGKG 319
+IP KG
Sbjct: 164 LNRIPYKDTFWKG 176
Score = 35.4 bits (80), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 303 KADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNV-FHFALQSGSRRTIELL 361
+ D+ G PLH A +GR V+ LIM + V +RG + H A G R ++ L
Sbjct: 34 QGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLAASHGHRDIVQKL 91
Query: 362 LKSPSLGNLVNEKNDDGNTPL 382
L+ + N VNE GN PL
Sbjct: 92 LQYKADINAVNEH---GNVPL 109
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEA 179
N +T LH+AA HGH D+V+ L+ + + AV NE + LH A
Sbjct: 69 NRGDDTPLHLAASHGHRDIVQKLLQY---------KADINAV-------NEHGNVPLHYA 112
Query: 180 ARYNQIDVVKMLTKEDPSLPYDANNAGETPL 210
+ Q V + L + +L N GE P+
Sbjct: 113 CFWGQDQVAEDLVA-NGALVSICNKYGEMPV 142
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L AA G D + ++ +G T LH AA + E+ +VLL + G +
Sbjct: 18 LLEAARAGQDDEVRILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKN--GADVNA 75
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLK--ADKSAAYK 303
D G PLHL A G+ +V+ LLK AD +A K
Sbjct: 76 IDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD 340
AA G + V+ +L A+ + D G PLHLAA L V E+++ + +D
Sbjct: 21 AARAGQDDEVR-ILMANGADVNAEDKVGLTPLHLAAMNDHLEIV-EVLLKNGADVNAIDA 78
Query: 341 RGWNVFHFALQSGSRRTIELLLK 363
G H G +E+LLK
Sbjct: 79 IGETPLHLVAMYGHLEIVEVLLK 101
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 3/86 (3%)
Query: 174 TALHEAARYNQIDVVKMLTKEDPSL-PYDANNAGETPLYVAAERGYKDVTQDILLTCKSP 232
T LH AA + +++V++L K + DA GETPL++ A G+ ++ + +L
Sbjct: 49 TPLHLAAMNDHLEIVEVLLKNGADVNAIDA--IGETPLHLVAMYGHLEIVEVLLKHGADV 106
Query: 233 ADHGPMGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 107 NAQDKFGKTAFDISIDNGNEDLAEIL 132
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 24/188 (12%)
Query: 139 VKDLIAECKKPHQNDPEKGVEAVRLMQGMT----NEAKD---TALHEAARYNQIDVVKML 191
+ D+ +C+ E AVRL T N+ D + LH A R + VV+ML
Sbjct: 1 MDDIFTQCR-------EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML 53
Query: 192 TKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRND 251
+ N +TPL++AA G++D+ Q +L G LH A F
Sbjct: 54 IMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQ 112
Query: 252 TEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIP 311
++ + L+ + G S ++ G +P+ A ++ELL+ + A N +IP
Sbjct: 113 DQVAEDLV--ANGALVSICNKYGEMPVDKAK-----APLRELLR--ERAEKMGQNLNRIP 163
Query: 312 LHLAAGKG 319
KG
Sbjct: 164 YKDTFWKG 171
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 6/81 (7%)
Query: 303 KADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNV-FHFALQSGSRRTIELL 361
+ D+ G PLH A +GR V+ LIM + V +RG + H A G R ++ L
Sbjct: 29 QGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLAASHGHRDIVQKL 86
Query: 362 LKSPSLGNLVNEKNDDGNTPL 382
L+ + N VNE GN PL
Sbjct: 87 LQYKADINAVNEH---GNVPL 104
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 17/91 (18%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEA 179
N +T LH+AA HGH D+V+ L+ + + AV NE + LH A
Sbjct: 64 NRGDDTPLHLAASHGHRDIVQKLLQY---------KADINAV-------NEHGNVPLHYA 107
Query: 180 ARYNQIDVVKMLTKEDPSLPYDANNAGETPL 210
+ Q V + L + +L N GE P+
Sbjct: 108 CFWGQDQVAEDLVA-NGALVSICNKYGEMPV 137
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 58/250 (23%), Positives = 94/250 (37%), Gaps = 48/250 (19%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY 182
G++ LH+A H + ++I + K G A Q N + T LH A
Sbjct: 5 GDSFLHLAIIHEEKALTMEVIRQVK---------GDLAFLNFQ---NNLQQTPLHLAVIT 52
Query: 183 NQIDVVKMLTKE--DPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGR 240
NQ ++ + L DP L + G TPL++A E+G + +C +P H +
Sbjct: 53 NQPEIAEALLGAGCDPEL---RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA 109
Query: 241 TALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSA 300
T + G LHLA+ GY +V+ L+
Sbjct: 110 T-----------------------------NYNGHTCLHLASIHGYLGIVELLVSLGADV 140
Query: 301 AYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIEL 360
+ G+ LHLA + V L++ C + V +G++ + S R I+
Sbjct: 141 NAQEPCNGRTALHLAVDLQNPDLVS-LLLKCGADVNRVTYQGYSPYQLTWGRPSTR-IQQ 198
Query: 361 LLKSPSLGNL 370
L +L NL
Sbjct: 199 QLGQLTLENL 208
Score = 36.6 bits (83), Expect = 0.049, Method: Composition-based stats.
Identities = 37/112 (33%), Positives = 48/112 (42%), Gaps = 10/112 (8%)
Query: 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCP---- 332
PLHLA + + LL A + D G PLHLA +G L +V L SC
Sbjct: 45 PLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 103
Query: 333 -SSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKND-DGNTPL 382
S + + G H A G +ELL+ SLG VN + +G T L
Sbjct: 104 HSILKATNYNGHTCLHLASIHGYLGIVELLV---SLGADVNAQEPCNGRTAL 152
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 45/159 (28%)
Query: 122 KGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAAR 181
+G T LH+A G V L C PH + K TN T LH A+
Sbjct: 74 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA----------TNYNGHTCLHLASI 123
Query: 182 YNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRT 241
+ + +V++L SL D N + P + GRT
Sbjct: 124 HGYLGIVELLV----SLGADVN-------------------------AQEPCN----GRT 150
Query: 242 ALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHL 280
ALH A + ++ +LL G ++ QG+ P L
Sbjct: 151 ALHLAVDLQNPDLVSLLL--KCGADVNRVTYQGYSPYQL 187
Score = 32.7 bits (73), Expect = 0.71, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 115 LLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDT 174
+L TN G T LH+A+ HG+ +V+ L++ + +P G T
Sbjct: 106 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG---------------RT 150
Query: 175 ALHEAARYNQIDVVKMLTK 193
ALH A D+V +L K
Sbjct: 151 ALHLAVDLQNPDLVSLLLK 169
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 48/100 (48%), Gaps = 6/100 (6%)
Query: 174 TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA 233
+ +HEAAR ++ V L ++ + ++ G TPLY+A E + + +L +S A
Sbjct: 103 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKKLL---ESGA 158
Query: 234 D--HGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKAD 271
D G + LHA A E+ +L+D TQ A+
Sbjct: 159 DVNQGKGQDSPLHAVARTASEELACLLMDFGADTQAKNAE 198
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 81/210 (38%), Gaps = 40/210 (19%)
Query: 174 TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA 233
T LH AA N+ID+VK + + + TPL+ A +G+
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH--------------- 88
Query: 234 DHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKEL 293
++ V+ G S D +G +HLAA G+ ++V L
Sbjct: 89 --------------------LSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128
Query: 294 LKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNV-FHFALQS 352
+ + D G PL AA + L+++ S L D N H+A+ +
Sbjct: 129 IAKGQDVD-MMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLA 187
Query: 353 GSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382
G+ I LLL++ G V+ +N G + L
Sbjct: 188 GNTTVISLLLEA---GANVDAQNIKGESAL 214
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 75/175 (42%), Gaps = 22/175 (12%)
Query: 125 TLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQ 184
TLLH AA + D+VK I+ KG ++ + + T LH A R
Sbjct: 44 TLLHWAAINNRIDLVKYYIS-----------KGA----IVDQLGGDLNSTPLHWATRQGH 88
Query: 185 IDVVKMLTK--EDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTA 242
+ +V L K DPSL + G + +++AA+ G+ + ++ + G T
Sbjct: 89 LSMVVQLMKYGADPSL---IDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTP 145
Query: 243 LHAAAFR-NDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKA 296
L AA+R + + T++LL ++ + LH A G V+ LL+A
Sbjct: 146 LMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKN-TALHWAVLAGNTTVISLLLEA 199
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 53/115 (46%), Gaps = 22/115 (19%)
Query: 122 KGETLLHIAARHGHADVVKDLIAECK------------------KPHQNDPEKGVEAVRL 163
+G + +H+AA+ GH +V LIA+ + + H DP + + +
Sbjct: 108 EGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNV 167
Query: 164 MQGMTNEA-KDTALHEAARYNQIDVVKMLTKEDPSLPYDANN-AGETPLYVAAER 216
+ ++ K+TALH A V+ +L + ++ DA N GE+ L +A +R
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV--DAQNIKGESALDLAKQR 220
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 78/202 (38%), Gaps = 54/202 (26%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEA 179
N G+T LH+AA G A V+ L A G + +G TALH A
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYA-----------AGAGVLVAERG-----GHTALHLA 85
Query: 180 ARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA--DHGP 237
R +L + PS P DA++ Y+ +D T D T +PA D P
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDT-----YLTQS---QDCTPD---TSHAPAAVDSQP 134
Query: 238 M----------------------GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQ-G 274
G T LH A D EM ++L D+ G +K + G
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA--GADLNKPEPTCG 192
Query: 275 WLPLHLAAHLGYYNVVKELLKA 296
PLHLA +V++ LLKA
Sbjct: 193 RTPLHLAVEAQAASVLELLLKA 214
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%)
Query: 151 QNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPL 210
+N+ E E RL N T LH A + ++V++L L G TPL
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Query: 211 YVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVL 258
++A E V + +L P GRT L +A R + + ++L
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 78/202 (38%), Gaps = 54/202 (26%)
Query: 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEA 179
N G+T LH+AA G A V+ L A G + +G TALH A
Sbjct: 42 NDLGQTALHLAAILGEASTVEKLYA-----------AGAGVLVAERG-----GHTALHLA 85
Query: 180 ARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA--DHGP 237
R +L + PS P DA++ Y+ +D T D T +PA D P
Sbjct: 86 CRVRAHTCACVLLQPRPSHPRDASDT-----YLTQS---QDCTPD---TSHAPAAVDSQP 134
Query: 238 M----------------------GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQ-G 274
G T LH A D EM ++L D+ G +K + G
Sbjct: 135 NPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA--GADLNKPEPTCG 192
Query: 275 WLPLHLAAHLGYYNVVKELLKA 296
PLHLA +V++ LLKA
Sbjct: 193 RTPLHLAVEAQAASVLELLLKA 214
Score = 32.3 bits (72), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 45/108 (41%)
Query: 151 QNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPL 210
+N+ E E RL N T LH A + ++V++L L G TPL
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPL 196
Query: 211 YVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVL 258
++A E V + +L P GRT L +A R + + ++L
Sbjct: 197 HLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 2/91 (2%)
Query: 170 EAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTC 229
E+ D LHEAA+ + ++ + + AG T LY A G+KD+ + +
Sbjct: 71 ESIDNPLHEAAKRGNLSWLRECLDNRVGVN-GLDKAGSTALYWACHGGHKDIVEXLFTQP 129
Query: 230 KSPADH-GPMGRTALHAAAFRNDTEMTKVLL 259
+ +G TALHAAA++ ++ ++LL
Sbjct: 130 NIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
Query: 243 LHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAY 302
LH AA R + + LD+ +G + D+ G L+ A H G+ ++V+ L
Sbjct: 77 LHEAAKRGNLSWLRECLDNRVGV--NGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELN 134
Query: 303 KADNEGKIPLHLAAGKGRLNTVQELI 328
+ + G LH AA KG + VQ L+
Sbjct: 135 QQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 127 LHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQID 186
LH AA+ G+ +++ + D GV + ++A TAL+ A D
Sbjct: 77 LHEAAKRGNLSWLRECL---------DNRVGVNGL-------DKAGSTALYWACHGGHKD 120
Query: 187 VVKMLTKEDPSLPYDANNA-GETPLYVAAERGYKDVTQDIL 226
+V+ L + P++ + N G+T L+ AA +GY D+ Q +L
Sbjct: 121 IVEXLFTQ-PNIELNQQNKLGDTALHAAAWKGYADIVQLLL 160
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 15/69 (21%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY 182
G T L+ A GH D+V+ L + P+ + L Q N+ DTALH AA
Sbjct: 106 GSTALYWACHGGHKDIVEXLFTQ---PN----------IELNQ--QNKLGDTALHAAAWK 150
Query: 183 NQIDVVKML 191
D+V++L
Sbjct: 151 GYADIVQLL 159
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Query: 106 RDILEMC---PGLLLKTNTK-GETLLHIAARHGHADVVKDLIAECKKPHQNDPEK 156
+DI+E P + L K G+T LH AA G+AD+V+ L+A+ + + EK
Sbjct: 119 KDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEK 173
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 84/221 (38%), Gaps = 42/221 (19%)
Query: 158 VEAVRLMQG------MTNEAKDTALHEAARYNQIDVVKMLTKE--DPSLPYDANNAGETP 209
+E +R ++G N + T LH A NQ ++ + L DP L + G TP
Sbjct: 25 MEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL---RDFRGNTP 81
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
L++A E+G + +C +P H + T
Sbjct: 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKAT---------------------------- 113
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329
+ G LHLA+ GY +V+ L+ + G+ LHLA + V L++
Sbjct: 114 -NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLV-SLLL 171
Query: 330 SCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNL 370
C + V +G++ + S R I+ L +L NL
Sbjct: 172 KCGADVNRVTYQGYSPYQLTWGRPSTR-IQQQLGQLTLENL 211
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 17/141 (12%)
Query: 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCP---- 332
PLHLA + + LL A + D G PLHLA +G L +V L SC
Sbjct: 48 PLHLAVITNQPEIAEALLGAGCDPELR-DFRGNTPLHLACEQGCLASVGVLTQSCTTPHL 106
Query: 333 -SSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKND-DGNTPLLEHAGSGS 390
S + + G H A G +ELL+ SLG VN + +G T L H
Sbjct: 107 HSILKATNYNGHTCLHLASIHGYLGIVELLV---SLGADVNAQEPCNGRTAL--HLAVDL 161
Query: 391 LIPSFV-----CHPKVDRLAF 406
P V C V+R+ +
Sbjct: 162 QNPDLVSLLLKCGADVNRVTY 182
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 45/159 (28%)
Query: 122 KGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAAR 181
+G T LH+A G V L C PH + K TN T LH A+
Sbjct: 77 RGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA----------TNYNGHTCLHLASI 126
Query: 182 YNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRT 241
+ + +V++L SL D N + P + GRT
Sbjct: 127 HGYLGIVELLV----SLGADVN-------------------------AQEPCN----GRT 153
Query: 242 ALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHL 280
ALH A + ++ +LL G ++ QG+ P L
Sbjct: 154 ALHLAVDLQNPDLVSLLL--KCGADVNRVTYQGYSPYQL 190
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 15/79 (18%)
Query: 115 LLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDT 174
+L TN G T LH+A+ HG+ +V+ L++ + +P G T
Sbjct: 109 ILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNG---------------RT 153
Query: 175 ALHEAARYNQIDVVKMLTK 193
ALH A D+V +L K
Sbjct: 154 ALHLAVDLQNPDLVSLLLK 172
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 37.7 bits (86), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 173 DTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQ 223
+TALH AA YNQ D +K+L K +L N AGET L +A ++ +K+ +
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEE 276
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 35/59 (59%), Gaps = 3/59 (5%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKA 296
+G+ L AA D E+ ++L+ + G + D+ G+ PLHLAA G+ +V+ LLKA
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMAN--GADVNAKDKDGYTPLHLAAREGHLEIVEVLLKA 57
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 2/84 (2%)
Query: 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD 340
AA G + V+ +L A+ + D +G PLHLAA +G L V E+++ + D
Sbjct: 9 AARAGQDDEVR-ILMANGADVNAKDKDGYTPLHLAAREGHLEIV-EVLLKAGADVNAQDK 66
Query: 341 RGWNVFHFALQSGSRRTIELLLKS 364
G F ++ +G+ E+L K+
Sbjct: 67 FGKTAFDISIDNGNEDLAEILQKA 90
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L + + G TPL++AA G+ ++ + +L
Sbjct: 6 LLEAARAGQDDEVRILMANGADVNAKDKD-GYTPLHLAAREGHLEIVEVLLKAGADVNAQ 64
Query: 236 GPMGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 65 DKFGKTAFDISIDNGNEDLAEIL 87
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 37.4 bits (85), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 173 DTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQ 223
+TALH AA YNQ D +K+L K +L N AGET L +A ++ +K+ +
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGR-ALVGTVNEAGETALDIARKKHHKECEE 257
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKA 296
+G+ L AA D E+ ++L+ + G + D+ G PLHLAA G+ VVK LL+A
Sbjct: 6 LGKKLLEAARAGQDDEV-RILM--ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 61
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD 340
AA G + V+ L+ A K D G PLHLAA G L V+ L++ + D
Sbjct: 13 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVK-LLLEAGADVNAQDK 70
Query: 341 RGWNVFHFALQSGSRRTIELL 361
G F ++ +G+ E+L
Sbjct: 71 FGKTAFDISIDNGNEDLAEIL 91
Score = 33.1 bits (74), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L + N G TPL++AA G+ +V + +L
Sbjct: 10 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVNAQ 68
Query: 236 GPMGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 69 DKFGKTAFDISIDNGNEDLAEIL 91
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 36.2 bits (82), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 34/59 (57%), Gaps = 3/59 (5%)
Query: 238 MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKA 296
+G+ L AA D E+ ++L+ + G + D+ G PLHLAA G+ VVK LL+A
Sbjct: 24 LGKKLLEAARAGQDDEV-RILM--ANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA 79
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Query: 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD 340
AA G + V+ L+ A K D G PLHLAA G L V+ L++ + D
Sbjct: 31 AARAGQDDEVRILMANGADVAAK-DKNGSTPLHLAARNGHLEVVK-LLLEAGADVXAQDK 88
Query: 341 RGWNVFHFALQSGSRRTIELL 361
G F ++ +G+ E+L
Sbjct: 89 FGKTAFDISIDNGNEDLAEIL 109
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 176 LHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADH 235
L EAAR Q D V++L + N G TPL++AA G+ +V + +L
Sbjct: 28 LLEAARAGQDDEVRILMANGADVAAKDKN-GSTPLHLAARNGHLEVVKLLLEAGADVXAQ 86
Query: 236 GPMGRTALHAAAFRNDTEMTKVL 258
G+TA + + ++ ++L
Sbjct: 87 DKFGKTAFDISIDNGNEDLAEIL 109
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 207 ETPLYVAA-ERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSS--- 262
E+PL +AA E + +++ + G MG TALH AA ++ E VL++++
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPEL 63
Query: 263 IGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNE------------GKI 310
+ + +G LH+A N+V+ LL S + +A G+
Sbjct: 64 VFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEH 123
Query: 311 PLHLAAGKGRLNTVQELI 328
PL AA G V+ LI
Sbjct: 124 PLSFAACVGSEEIVRLLI 141
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 78/198 (39%), Gaps = 35/198 (17%)
Query: 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKD--TALHEAA 180
GET LHIAA + + + L+ + PE + + MT+E + TALH A
Sbjct: 37 GETALHIAALYDNLEAAMVLM-------EAAPE------LVFEPMTSELYEGQTALHIAV 83
Query: 181 RYNQIDVVKMLTKEDPSL------------PYDANNAGETPLYVAAERGYKDVTQDILLT 228
+++V+ L S+ P++ GE PL AA G +++ + ++
Sbjct: 84 INQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH 143
Query: 229 CKSPADHGPMGRTALHAAAFRND----TEMTKVLLDSSIGTQTSK----ADQQGWLPLHL 280
+G T LH + + +M +LL G + QG P L
Sbjct: 144 GADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203
Query: 281 AAHLGYYNVVKELLKADK 298
A G + + L++ K
Sbjct: 204 AGVEGNIVMFQHLMQKRK 221
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 32/184 (17%)
Query: 173 DTALHEAARYNQIDVVKMLTKEDPSLPYDANNA----GETPLYVAAERGYKDVTQDILLT 228
+TALH AA Y+ ++ +L + P L ++ + G+T L++A ++ + +L
Sbjct: 38 ETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLAR 97
Query: 229 CKS-------------PADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGW 275
S P + G L AA E+ ++L++ G D G
Sbjct: 98 GASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEH--GADIRAQDSLGN 155
Query: 276 LPLHL---------AAHLGYYNVVKELLKAD--KSAAYKADNEGKIPLHLAAGKGRLNTV 324
LH+ A + YN++ D KS +N+G P LA +G +
Sbjct: 156 TVLHILILQPNKTFACQM--YNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMF 213
Query: 325 QELI 328
Q L+
Sbjct: 214 QHLM 217
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 25/156 (16%)
Query: 179 AARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA-DHGP 237
AA+ N + + L K + + GET L++AA Y ++ ++L +P P
Sbjct: 10 AAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAAL--YDNLEAAMVLMEAAPELVFEP 67
Query: 238 M------GRTALHAAAFRNDTEMTKVLL--DSSIGTQTSKA---------DQQGWLPLHL 280
M G+TALH A + + + LL +S+ + + + G PL
Sbjct: 68 MTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSF 127
Query: 281 AAHLGYYNVVKELLK--ADKSAAYKADNEGKIPLHL 314
AA +G +V+ L++ AD A D+ G LH+
Sbjct: 128 AACVGSEEIVRLLIEHGADIRA---QDSLGNTVLHI 160
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 90/225 (40%), Gaps = 9/225 (4%)
Query: 164 MQGMTNEAKDTALHEAARYNQIDVVKMLTK--EDPSLPYDA-NNAGETPLYVAAERGYKD 220
M +E DT LH A + V L + D NN +TPL++A
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPS 60
Query: 221 VTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSI-GTQTSKA-DQQGWLPL 278
V + ++ SP G+TA H A + LLDS+ GT +A + G L
Sbjct: 61 VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTAL 120
Query: 279 HLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELV 338
H+A + V+ LL+ G+ PL A L+ VQ L++ ++
Sbjct: 121 HVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ-LLLQHGANVNAQ 179
Query: 339 DDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLL 383
G + H A G + L++S + +L N ND TPL+
Sbjct: 180 MYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHND---TPLM 221
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 90/222 (40%), Gaps = 29/222 (13%)
Query: 118 KTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALH 177
+ + G+T LHIA G+ V L+ N ++G + + N + T LH
Sbjct: 4 RADEDGDTPLHIAVVQGNLPAVHRLV--------NLFQQGGRELDIY----NNLRQTPLH 51
Query: 178 EAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGP 237
A VV++L S P + G+T ++A E + LL +P G
Sbjct: 52 LAVITTLPSVVRLLVTAGAS-PMALDRHGQTAAHLACEHRSPTCLR-ALLDSAAP---GT 106
Query: 238 M--------GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKAD-QQGWLPLHLAAHLGYYN 288
+ G TALH A E ++LL+ G D + G PL A +
Sbjct: 107 LDLEARNYDGLTALHVAVNTECQETVQLLLER--GADIDAVDIKSGRSPLIHAVENNSLS 164
Query: 289 VVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMS 330
+V+ LL+ + + G LH A+G+G L V+ L+ S
Sbjct: 165 MVQLLLQHGANVNAQM-YSGSSALHSASGRGLLPLVRTLVRS 205
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 174 TALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPA 233
+ +HEAAR ++ V L ++ + ++ G TPLY+A E + + LL +
Sbjct: 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLG-TPLYLACENQQRACVKK-LLESGADV 216
Query: 234 DHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKAD 271
+ G + LHA E+ +L+D TQ A+
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAE 254
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 54/121 (44%), Gaps = 3/121 (2%)
Query: 208 TPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQT 267
TPL VA G ++ ++ D G TAL A N + + LL S G+
Sbjct: 37 TPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL--SKGSNV 94
Query: 268 SKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
+ D G PL + GY + LL+ + + + EG+ PL +A+ GR V++L
Sbjct: 95 NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDR-NLEGETPLIVASKYGRSEIVKKL 153
Query: 328 I 328
+
Sbjct: 154 L 154
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 6/151 (3%)
Query: 142 LIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVV-KMLTKEDPSLPY 200
L+ C +N +K VE ++ E TAL A + N++ + K+L+K
Sbjct: 39 LMVACMLGMENAIDKLVENFDKLEDKDIEGS-TALIWAVKNNRLGIAEKLLSKGSNVNTK 97
Query: 201 DANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLD 260
D +G+TPL + GY +++ +L + D G T L A+ +E+ K LL+
Sbjct: 98 DF--SGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLE 155
Query: 261 SSIGTQTSKADQQGWLPLHLAAHLGYYNVVK 291
+G S D G A G V+K
Sbjct: 156 --LGADISARDLTGLTAEASARIFGRQEVIK 184
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 5/107 (4%)
Query: 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCE 336
PL +A LG N + +L++ K D EG L A RL + E ++S S+
Sbjct: 38 PLMVACMLGMENAIDKLVENFDKLEDK-DIEGSTALIWAVKNNRLG-IAEKLLSKGSNVN 95
Query: 337 LVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLL 383
D G +++ G LL+ G VN++N +G TPL+
Sbjct: 96 TKDFSGKTPLMWSIIFGYSEMSYFLLEH---GANVNDRNLEGETPLI 139
>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
pdb|3KEA|B Chain B, Structure Function Studies Of Vaccinia Virus Host-Range
Protein K1 Reveal A Novel Ankyrin Repeat Interaction
Surface For K1s Function
Length = 285
Score = 34.7 bits (78), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 266 QTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQ 325
T KAD G + A +V LL A A K E + PLH AA V+
Sbjct: 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNA---GALKNLLENEFPLHQAATLEDTKIVK 79
Query: 326 ELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLK 363
L+ S + DD+G ++A+ SG+ +T++L +K
Sbjct: 80 ILLFSGLDDSQF-DDKGNTALYYAVDSGNXQTVKLFVK 116
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 243 LHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAY 302
LH AA DT++ K+LL S G S+ D +G L+ A G VK +K + +
Sbjct: 66 LHQAATLEDTKIVKILLFS--GLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWRLXF 123
Query: 303 KADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCEL 337
K + A ++ V + PS+ +L
Sbjct: 124 YGKTGWKTSFYHAVXLNDVSIVSYFLSEIPSTFDL 158
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
Query: 199 PYDANNAGETPLYV---AAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMT 255
P A A PL + AA G +V Q + P+ G TALH A + +
Sbjct: 11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIV 70
Query: 256 KVLLDSSIGTQTSKADQQGWLPLHLAA 282
L+ + G + D GW PLH AA
Sbjct: 71 DFLI--TAGANVNSPDSHGWTPLHCAA 95
Score = 30.8 bits (68), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 42/90 (46%), Gaps = 13/90 (14%)
Query: 176 LHEAARYNQIDVVKMLTKE--DPSLPYDANNAGETPLYVAAERGYKDVTQDILLTC---- 229
L +AA +++VV+ KE DPS P N G T L+ A G D L+T
Sbjct: 25 LLDAALTGELEVVQQAVKEMNDPSQP---NEEGITALHNAI-CGANYSIVDFLITAGANV 80
Query: 230 KSPADHGPMGRTALHAAAFRNDTEMTKVLL 259
SP HG T LH AA NDT + L+
Sbjct: 81 NSPDSHG---WTPLHCAASCNDTVICMALV 107
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 6/139 (4%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLD--SSIGTQT 267
L A +R K V + + T + G T L+ A ND E+ K L+D + I Q
Sbjct: 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQN 69
Query: 268 SKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327
S +D P A G ++ +LK K + G L AA KG ++ V+ L
Sbjct: 70 SISDS----PYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125
Query: 328 IMSCPSSCELVDDRGWNVF 346
+ + +D G+
Sbjct: 126 LEDGREDIDFQNDFGYTAL 144
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 19/112 (16%)
Query: 116 LLKTNTKGETLLHIAARHGHADVVKDLIAECKKP--HQNDPEKGVEAVRLMQGMTNEAKD 173
L K N G L AA GH D VK L+ + ++ QND G T +
Sbjct: 99 LNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND-----------FGYTALIEA 147
Query: 174 TALHEAARYNQIDVVKMLTKE--DPSLPYDANNAGETPLYVAAERGYKDVTQ 223
L E + Q D+VK+L + D S+ +N+G T + A ++GY ++++
Sbjct: 148 VGLREGNQLYQ-DIVKLLMENGADQSI---KDNSGRTAMDYANQKGYTEISK 195
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 4/154 (2%)
Query: 175 ALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPAD 234
++H+ A ++D +K ++ +L + G TPL A+ G + + +L P
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 235 HGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
+AL A+ T++ +LL+ + D G PL A H + V+ LL
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIY--DWNGGTPLLYAVHGNHVKCVEALL 122
Query: 295 KADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
+AD+ G P+ LA G VQ++I
Sbjct: 123 ARGADLTTEADS-GYTPMDLAVALG-YRKVQQVI 154
>pdb|1DC2|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 20
Structures
pdb|1A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a, 18
Structures
pdb|2A5E|A Chain A, Solution Nmr Structure Of Tumor Suppressor P16ink4a,
Restrained Minimized Mean Structure
Length = 156
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 9/147 (6%)
Query: 166 GMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDI 225
G + E L AA +++ V+ L E +LP N+ G P+ V G V + +
Sbjct: 6 GSSMEPSADWLATAAARGRVEEVRALL-EAGALPNAPNSYGRRPIQVMM-MGSARVAELL 63
Query: 226 LLTCKSP--ADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAH 283
LL P AD + R +H AA R T V+L + G + D G LP+ LA
Sbjct: 64 LLHGAEPNCADPATLTR-PVHDAA-REGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEE 120
Query: 284 LGYYNVVKELLKADKSAAYKADNEGKI 310
LG+ +V + L A + + N +I
Sbjct: 121 LGHRDVARYLRAA--AGGTRGSNHARI 145
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/105 (25%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
Query: 245 AAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKA 304
AA ++ ++++L D + D+ G L A LG V+ L +A ++
Sbjct: 51 AARKADEQALSQLLEDRDV----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD 106
Query: 305 DNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFA 349
G LH+AAG R V+ L+ + E+ D+RG A
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELA 150
>pdb|3LJN|A Chain A, Ankyrin Repeat Protein From Leishmania Major
Length = 364
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 4/89 (4%)
Query: 210 LYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK 269
++VAA +G D + ++ T SP G TALH A + K L +S+G S
Sbjct: 24 IHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL--ASVGEVHSL 81
Query: 270 ADQQGWLPLHLAAHLGYYNVVKELLKADK 298
G P+HLA ++V L++ K
Sbjct: 82 --WHGQKPIHLAVXANKTDLVVALVEGAK 108
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 16/75 (21%)
Query: 117 LKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTAL 176
+K++ + +H+AAR G D V+ LI E GV + N TAL
Sbjct: 14 IKSDDENXEKIHVAARKGQTDEVRRLI-----------ETGVSPT-----IQNRFGCTAL 57
Query: 177 HEAARYNQIDVVKML 191
H A ++ +D K L
Sbjct: 58 HLACKFGCVDTAKYL 72
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 65/154 (42%), Gaps = 4/154 (2%)
Query: 175 ALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPAD 234
++H+ A ++D +K ++ +L + G TPL A+ G + + +L P
Sbjct: 5 SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64
Query: 235 HGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELL 294
+AL A+ T++ +LL+ + D G PL A + V+ LL
Sbjct: 65 LAKERESALSLASTGGYTDIVGLLLERDVDINIY--DWNGGTPLLYAVRGNHVKCVEALL 122
Query: 295 KADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328
+AD+ G P+ LA G VQ++I
Sbjct: 123 ARGADLTTEADS-GYTPMDLAVALG-YRKVQQVI 154
>pdb|1YUW|A Chain A, Crystal Structure Of Bovine Hsc70(Aa1-554)e213aD214A
MUTANT
Length = 554
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIAAGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 50/129 (38%), Gaps = 13/129 (10%)
Query: 241 TALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSA 300
T AA + D + LL+ D+ G L A LG V+ L +A
Sbjct: 47 TPWWTAARKADEQALSQLLEDR---DVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADL 103
Query: 301 AYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIEL 360
++ G LH+AAG R V+ L+ + E+ D+RG A +
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALV-ELGADIEVEDERGLTALELARE--------- 153
Query: 361 LLKSPSLGN 369
+LK+ GN
Sbjct: 154 ILKTTPKGN 162
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 37/132 (28%), Positives = 56/132 (42%), Gaps = 25/132 (18%)
Query: 130 AARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVK 189
A ++G D VKD +A KG + R ++G LH AA Q+++++
Sbjct: 9 ALKNGDLDEVKDYVA-----------KGEDVNRTLEG-----GRKPLHYAADCGQLEILE 52
Query: 190 --MLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAA 247
+L D + P D ++ TPL A G+ + +L GP G TAL A
Sbjct: 53 FLLLKGADINAP-DKHHI--TPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEA-- 107
Query: 248 FRNDTEMTKVLL 259
D + K LL
Sbjct: 108 --TDNQAIKALL 117
>pdb|1NGC|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FSVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1HX1|A Chain A, Crystal Structure Of A Bag Domain In Complex With The
Hsc70 Atpase Domain
Length = 400
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 224 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 281
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 282 LRTACERAKRT 292
>pdb|3FZF|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH ATP
pdb|3FZH|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZK|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZL|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3FZM|A Chain A, Crystal Structures Of Hsc70BAG1 IN COMPLEX WITH SMALL
Molecule Inhibitors
pdb|3LDQ|A Chain A, Crystal Structure Of Hsc70BAG1 IN COMPLEX WITH SMALL
MOLECULE Inhibitor
pdb|3M3Z|A Chain A, Crystal Structure Of Hsc70/bag1 In Complex With Small
Molecule Inhibitor
Length = 381
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1NGD|A Chain A, Structural Basis Of The 70-kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 30.0 bits (66), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FNVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1QQO|A Chain A, E175s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 202 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 259
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 260 LRTACERAKRT 270
>pdb|1KAY|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71a Mutant
Length = 381
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1KAX|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71m Mutant
Length = 381
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1ATS|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 103 HFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVR 162
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 204 EFDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVR 261
Query: 163 LMQGMTNEAKDT 174
++ AK T
Sbjct: 262 RLRTACERAKRT 273
>pdb|1KAZ|A Chain A, 70kd Heat Shock Cognate Protein Atpase Domain, K71e Mutant
Length = 381
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|2BUP|A Chain A, T13g Mutant Of The Atpase Fragment Of Bovine Hsc70
Length = 381
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|2QW9|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QW9|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Apo
State
pdb|2QWL|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWL|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The Adp
State
pdb|2QWM|A Chain A, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
pdb|2QWM|B Chain B, Crystal Structure Of Bovine Hsc70 (1-394aa)in The AdpVi
State
Length = 394
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1NGA|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1BA1|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
Mutant With Cys 17 Replaced By Lys
Length = 386
Score = 29.6 bits (65), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1NGG|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1NGF|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|3CQX|A Chain A, Chaperone Complex
pdb|3CQX|B Chain B, Chaperone Complex
Length = 386
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 210 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 267
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 268 LRTACERAKRT 278
>pdb|1NGH|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1NGE|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 29.6 bits (65), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1BUP|A Chain A, T13s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 386
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1NGB|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
Length = 386
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1ATR|A Chain A, Threonine 204 Of The Chaperone Protein Hsc70 Influences
The Structure Of The Active Site But Is Not Essential
For Atp Hydrolysis
Length = 386
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1HPM|A Chain A, How Potassium Affects The Activity Of The Molecular
Chaperone Hsc70. Ii. Potassium Binds Specifically In The
Atpase Active Site
pdb|1NGI|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|1NGJ|A Chain A, Structural Basis Of The 70-Kilodalton Heat Shock Cognate
Protein Atp Hydrolytic Activity, Ii. Structure Of The
Active Site With Adp Or Atp Bound To Wild Type And
Mutant Atpase Fragment
pdb|3HSC|A Chain A, Three-Dimensional Structure Of The Atpase Fragment Of A
70k Heat-Shock Cognate Protein
Length = 386
Score = 29.6 bits (65), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|2QWN|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-386aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi State
pdb|2QWO|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #1
pdb|2QWP|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The AdpPi Form #2
pdb|2QWQ|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Hydrolyzed Form
pdb|2QWR|A Chain A, Crystal Structure Of Disulfide-Bond-Crosslinked Complex Of
Bovine Hsc70 (1-394aa)r171c And Bovine Auxilin
(810-910aa)d876c In The Amppnp Intact Form
Length = 394
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1BA0|A Chain A, Heat-Shock Cognate 70kd Protein 44kd Atpase N-Terminal
1nge 3
Length = 386
Score = 29.3 bits (64), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FKVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|3C7N|B Chain B, Structure Of The Hsp110:hsc70 Nucleotide Exchange Complex
Length = 554
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H+ D + AVR
Sbjct: 205 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRKHKKDISENKRAVRR 262
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 263 LRTACERAKRT 273
>pdb|1IRE|A Chain A, Crystal Structure Of Co-Type Nitrile Hydratase From
Pseudonocardia Thermophila
Length = 204
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 469 NYRKEKSSSIHEELTQYVNKGKESQLVVAALIATVTFTAGITMPGGYINEIGPDQGAAVL 528
N ++ I +E+T V K ES L+ ++ T M Y NE+GP GA V+
Sbjct: 4 NILRKSDEEIQKEITARV-KALESMLIEQGILTTSMID---RMAEIYENEVGPHLGAKVV 59
Query: 529 TKS 531
K+
Sbjct: 60 VKA 62
>pdb|1UGP|A Chain A, Crystal Structure Of Co-Type Nitrile Hydratase Complexed
With N-Butyric Acid
Length = 203
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 469 NYRKEKSSSIHEELTQYVNKGKESQLVVAALIATVTFTAGITMPGGYINEIGPDQGAAVL 528
N ++ I +E+T V K ES L+ ++ T M Y NE+GP GA V+
Sbjct: 3 NILRKSDEEIQKEITARV-KALESMLIEQGILTTSMID---RMAEIYENEVGPHLGAKVV 58
Query: 529 TKS 531
K+
Sbjct: 59 VKA 61
>pdb|1UGR|A Chain A, Crystal Structure Of At109s Mutant Of Co-Type Nitrile
Hydratase
Length = 203
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 469 NYRKEKSSSIHEELTQYVNKGKESQLVVAALIATVTFTAGITMPGGYINEIGPDQGAAVL 528
N ++ I +E+T V K ES L+ ++ T M Y NE+GP GA V+
Sbjct: 3 NILRKSDEEIQKEITARV-KALESMLIEQGILTTSMID---RMAEIYENEVGPHLGAKVV 58
Query: 529 TKS 531
K+
Sbjct: 59 VKA 61
>pdb|1UGS|A Chain A, Crystal Structure Of Ay114t Mutant Of Co-Type Nitrile
Hydratase
Length = 203
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 469 NYRKEKSSSIHEELTQYVNKGKESQLVVAALIATVTFTAGITMPGGYINEIGPDQGAAVL 528
N ++ I +E+T V K ES L+ ++ T M Y NE+GP GA V+
Sbjct: 3 NILRKSDEEIQKEITARV-KALESMLIEQGILTTSMID---RMAEIYENEVGPHLGAKVV 58
Query: 529 TKS 531
K+
Sbjct: 59 VKA 61
>pdb|1UGQ|A Chain A, Crystal Structure Of Apoenzyme Of Co-Type Nitrile
Hydratase
Length = 203
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 469 NYRKEKSSSIHEELTQYVNKGKESQLVVAALIATVTFTAGITMPGGYINEIGPDQGAAVL 528
N ++ I +E+T V K ES L+ ++ T M Y NE+GP GA V+
Sbjct: 3 NILRKSDEEIQKEITARV-KALESMLIEQGILTTSMID---RMAEIYENEVGPHLGAKVV 58
Query: 529 TKS 531
K+
Sbjct: 59 VKA 61
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 264 GTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLA 315
G ++AD G PLH A LG+ + LK + D+EG+ PL +A
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIA 308
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 264 GTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLA 315
G ++AD G PLH A LG+ + LK + D+EG+ PL +A
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIA 308
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 264 GTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLA 315
G ++AD G PLH A LG+ + LK + D+EG+ PL +A
Sbjct: 258 GANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGAR-DSEGRDPLTIA 308
>pdb|1QQM|A Chain A, D199s Mutant Of Bovine 70 Kilodalton Heat Shock Protein
Length = 378
Score = 29.3 bits (64), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 104 FGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRL 163
F IL + G+ +T G+T H+ +V IAE K+ H D + AVR
Sbjct: 202 FDVSILTIEDGIFEVKSTAGDT--HLGGEDFDNRMVNHFIAEFKRAHAKDISENKRAVRR 259
Query: 164 MQGMTNEAKDT 174
++ AK T
Sbjct: 260 LRTACERAKRT 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,150,653
Number of Sequences: 62578
Number of extensions: 733758
Number of successful extensions: 2754
Number of sequences better than 100.0: 141
Number of HSP's better than 100.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 67
Number of HSP's that attempted gapping in prelim test: 1756
Number of HSP's gapped (non-prelim): 441
length of query: 663
length of database: 14,973,337
effective HSP length: 105
effective length of query: 558
effective length of database: 8,402,647
effective search space: 4688677026
effective search space used: 4688677026
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)