Query 006054
Match_columns 663
No_of_seqs 471 out of 4123
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 14:44:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006054.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006054hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n11_A Ankyrin; clathrin, BAND 100.0 4.6E-52 1.6E-56 449.7 33.1 366 19-421 3-388 (437)
2 1n11_A Ankyrin; clathrin, BAND 100.0 1.1E-51 3.6E-56 446.9 34.8 345 55-445 8-370 (437)
3 4g8k_A 2-5A-dependent ribonucl 100.0 6.6E-40 2.3E-44 341.7 26.6 291 60-406 24-330 (337)
4 4g8k_A 2-5A-dependent ribonucl 100.0 2.8E-39 9.4E-44 337.0 31.1 294 25-374 20-330 (337)
5 1wdy_A 2-5A-dependent ribonucl 100.0 6E-39 2.1E-43 325.3 29.9 265 122-408 4-284 (285)
6 3utm_A Tankyrase-1; tankyrase, 100.0 1.9E-38 6.4E-43 332.0 28.6 334 16-420 10-349 (351)
7 3utm_A Tankyrase-1; tankyrase, 100.0 3.9E-39 1.3E-43 337.2 22.2 298 57-418 20-321 (351)
8 1wdy_A 2-5A-dependent ribonucl 100.0 2.9E-38 9.9E-43 320.3 26.7 268 59-376 3-284 (285)
9 2fo1_E LIN-12 protein; beta-ba 100.0 4.8E-39 1.6E-43 339.7 18.2 312 33-403 40-372 (373)
10 3d9h_A CDNA FLJ77766, highly s 100.0 1E-36 3.6E-41 309.5 23.6 269 119-403 11-280 (285)
11 2fo1_E LIN-12 protein; beta-ba 100.0 4.9E-37 1.7E-41 324.4 20.3 277 33-364 69-368 (373)
12 3d9h_A CDNA FLJ77766, highly s 100.0 4.2E-36 1.4E-40 305.0 23.3 270 57-371 11-280 (285)
13 2xai_A ASB-9, ankyrin repeat a 100.0 6E-36 2E-40 299.9 23.2 240 171-421 2-249 (261)
14 2xai_A ASB-9, ankyrin repeat a 100.0 6.1E-36 2.1E-40 299.8 22.6 243 122-389 2-249 (261)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-35 5.8E-40 295.1 23.2 239 54-332 3-247 (253)
16 3ljn_A Hypothetical protein; a 100.0 6.3E-37 2.2E-41 322.7 12.5 263 116-403 13-315 (364)
17 1yyh_A HN1;, notch 1, ankyrin 100.0 3.4E-35 1.1E-39 293.0 23.4 229 116-364 3-245 (253)
18 1oy3_D Transcription factor in 100.0 3.8E-35 1.3E-39 297.2 22.8 264 116-420 2-268 (282)
19 1oy3_D Transcription factor in 100.0 3.6E-35 1.2E-39 297.3 20.6 231 166-422 3-237 (282)
20 3aji_A 26S proteasome non-ATPa 100.0 1.2E-34 4E-39 284.6 21.1 227 169-402 3-230 (231)
21 3ljn_A Hypothetical protein; a 100.0 1.1E-35 3.8E-40 313.2 14.5 280 18-331 8-312 (364)
22 3b7b_A Euchromatic histone-lys 100.0 7.7E-34 2.6E-38 280.0 26.8 216 168-390 7-222 (237)
23 3b7b_A Euchromatic histone-lys 100.0 7.9E-34 2.7E-38 279.9 26.6 216 201-422 6-222 (237)
24 1k1a_A B-cell lymphoma 3-encod 100.0 1.9E-34 6.4E-39 285.0 22.1 227 169-400 6-239 (241)
25 1k1a_A B-cell lymphoma 3-encod 100.0 2.5E-34 8.4E-39 284.2 22.6 215 201-421 4-227 (241)
26 2dzn_A Probable 26S proteasome 100.0 7.5E-34 2.6E-38 278.2 22.7 213 172-388 2-218 (228)
27 3aji_A 26S proteasome non-ATPa 100.0 2.1E-33 7.2E-38 275.7 24.0 225 120-364 3-227 (231)
28 4b93_B Ankyrin repeat domain-c 100.0 1.9E-34 6.4E-39 289.7 16.6 216 168-390 7-230 (269)
29 2dzn_A Probable 26S proteasome 100.0 3E-33 1E-37 273.9 22.9 221 123-364 2-227 (228)
30 3eu9_A Huntingtin-interacting 100.0 7.6E-33 2.6E-37 272.9 25.7 229 117-364 3-232 (240)
31 4b93_B Ankyrin repeat domain-c 100.0 4.6E-34 1.6E-38 286.8 14.4 229 118-361 6-235 (269)
32 1s70_B 130 kDa myosin-binding 100.0 1.8E-33 6.3E-38 287.6 17.5 270 129-419 4-274 (299)
33 1s70_B 130 kDa myosin-binding 100.0 2.1E-33 7.1E-38 287.2 14.6 240 119-388 36-275 (299)
34 1sw6_A Regulatory protein SWI6 100.0 2.6E-33 8.8E-38 290.2 14.0 268 83-389 32-327 (327)
35 2f8y_A Notch homolog 1, transl 100.0 1.4E-31 5E-36 261.0 25.7 213 83-333 4-216 (223)
36 2f8y_A Notch homolog 1, transl 100.0 2.7E-32 9.4E-37 266.2 20.0 217 182-404 1-218 (223)
37 3eu9_A Huntingtin-interacting 100.0 5.5E-32 1.9E-36 266.7 22.0 231 168-406 5-239 (240)
38 3kea_A K1L; tropism, ANK repea 100.0 6.5E-33 2.2E-37 281.4 13.7 241 2-300 5-247 (285)
39 3kea_A K1L; tropism, ANK repea 100.0 2.8E-32 9.6E-37 276.7 17.5 232 167-418 26-260 (285)
40 1sw6_A Regulatory protein SWI6 100.0 4E-33 1.4E-37 288.7 1.5 261 121-419 21-325 (327)
41 1ikn_D Protein (I-kappa-B-alph 100.0 2.5E-31 8.7E-36 261.9 12.3 211 202-418 4-227 (236)
42 2rfa_A Transient receptor pote 100.0 5.4E-30 1.8E-34 251.6 21.5 204 122-364 2-219 (232)
43 2rfa_A Transient receptor pote 100.0 1.5E-29 5.1E-34 248.4 22.1 209 172-408 3-228 (232)
44 1ikn_D Protein (I-kappa-B-alph 100.0 2.4E-30 8.1E-35 254.9 14.8 217 57-316 4-227 (236)
45 3hra_A Ankyrin repeat family p 100.0 3.1E-29 1.1E-33 240.3 21.1 193 170-364 3-200 (201)
46 3hra_A Ankyrin repeat family p 100.0 1.3E-28 4.5E-33 235.9 24.4 192 204-400 3-201 (201)
47 2pnn_A Transient receptor pote 100.0 3.5E-29 1.2E-33 252.4 15.1 208 117-332 7-257 (273)
48 2etb_A Transient receptor pote 100.0 9.3E-29 3.2E-33 246.7 16.8 197 122-332 1-245 (256)
49 2pnn_A Transient receptor pote 100.0 9.8E-29 3.3E-33 249.1 15.5 223 57-311 9-270 (273)
50 4gpm_A Engineered protein OR26 100.0 1.7E-27 5.7E-32 220.9 20.8 157 125-300 6-162 (169)
51 4gpm_A Engineered protein OR26 100.0 1.5E-27 5.2E-32 221.1 20.5 157 209-372 7-163 (169)
52 2etb_A Transient receptor pote 100.0 3E-28 1E-32 243.0 16.0 190 172-364 2-243 (256)
53 3jxi_A Vanilloid receptor-rela 100.0 5.6E-28 1.9E-32 241.6 14.4 202 120-333 2-250 (260)
54 3jxi_A Vanilloid receptor-rela 99.9 5.4E-27 1.9E-31 234.4 14.3 193 169-364 2-247 (260)
55 2rfm_A Putative ankyrin repeat 99.9 6.6E-26 2.3E-30 215.5 19.1 166 113-297 25-190 (192)
56 4hbd_A KN motif and ankyrin re 99.9 3.9E-26 1.3E-30 230.3 17.4 190 124-330 77-272 (276)
57 4hbd_A KN motif and ankyrin re 99.9 5.8E-26 2E-30 228.9 16.1 194 58-297 73-273 (276)
58 3v31_A Ankyrin repeat family A 99.9 3.7E-25 1.3E-29 205.2 19.9 160 122-300 2-161 (167)
59 2rfm_A Putative ankyrin repeat 99.9 3.1E-25 1.1E-29 210.8 18.8 162 165-330 28-189 (192)
60 3v30_A DNA-binding protein rfx 99.9 1.5E-25 5.1E-30 208.9 16.2 123 173-297 3-125 (172)
61 1ihb_A P18-INK4C(INK6), cyclin 99.9 2.1E-25 7.1E-30 205.7 17.0 155 206-364 5-159 (162)
62 3v30_A DNA-binding protein rfx 99.9 2E-25 6.7E-30 208.1 16.6 169 206-381 2-171 (172)
63 2y1l_E Darpin-8.4; hydrolase-i 99.9 9.1E-25 3.1E-29 203.0 19.8 159 119-296 10-168 (169)
64 1ihb_A P18-INK4C(INK6), cyclin 99.9 4.7E-25 1.6E-29 203.3 17.4 159 171-333 4-162 (162)
65 2aja_A Ankyrin repeat family p 99.9 8.5E-29 2.9E-33 259.0 -9.1 296 41-422 45-361 (376)
66 2y1l_E Darpin-8.4; hydrolase-i 99.9 1.6E-24 5.3E-29 201.5 19.3 158 203-364 11-168 (169)
67 3v31_A Ankyrin repeat family A 99.9 1.1E-24 3.9E-29 201.9 18.1 155 206-364 3-157 (167)
68 2vge_A RELA-associated inhibit 99.9 6.2E-27 2.1E-31 229.0 1.3 176 239-422 21-200 (229)
69 1awc_B Protein (GA binding pro 99.9 3.1E-24 1.1E-28 195.9 18.7 150 124-293 3-152 (153)
70 2aja_A Ankyrin repeat family p 99.9 1.7E-27 5.7E-32 249.1 -4.2 245 124-423 66-332 (376)
71 1ycs_B 53BP2, P53BP2; ankyrin 99.9 6.3E-26 2.2E-30 223.6 7.3 206 204-418 3-226 (239)
72 1awc_B Protein (GA binding pro 99.9 3.9E-24 1.3E-28 195.2 18.6 150 173-327 3-152 (153)
73 3twr_A Tankyrase-2; ankyrin re 99.9 1.3E-24 4.3E-29 201.1 15.0 160 168-331 4-163 (165)
74 2vge_A RELA-associated inhibit 99.9 5.8E-26 2E-30 222.1 6.2 195 188-391 1-201 (229)
75 1bd8_A P19INK4D CDK4/6 inhibit 99.9 6.9E-24 2.4E-28 194.1 18.1 153 172-329 2-154 (156)
76 3f6q_A Integrin-linked protein 99.9 4.4E-24 1.5E-28 200.4 16.3 161 208-375 7-168 (179)
77 1bd8_A P19INK4D CDK4/6 inhibit 99.9 7.5E-24 2.6E-28 193.9 17.1 153 206-364 2-155 (156)
78 3twr_A Tankyrase-2; ankyrin re 99.9 3.2E-24 1.1E-28 198.4 14.4 161 119-298 4-164 (165)
79 3f6q_A Integrin-linked protein 99.9 8.4E-24 2.9E-28 198.5 16.7 163 170-335 3-165 (179)
80 1ycs_B 53BP2, P53BP2; ankyrin 99.9 4.8E-24 1.6E-28 210.2 9.0 160 121-300 3-165 (239)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 6.2E-22 2.1E-26 181.2 11.2 141 236-384 9-150 (156)
82 1bi7_B P16INK4A, MTS1, multipl 99.9 1.2E-21 4.2E-26 179.2 12.7 143 118-280 7-150 (156)
83 1d9s_A Cyclin-dependent kinase 99.9 2.6E-21 8.8E-26 172.7 12.2 128 232-364 5-133 (136)
84 1d9s_A Cyclin-dependent kinase 99.8 4.9E-21 1.7E-25 170.8 13.2 127 201-331 7-134 (136)
85 3t8k_A Uncharacterized protein 99.8 1.9E-21 6.4E-26 183.2 10.1 154 123-297 6-177 (186)
86 3t8k_A Uncharacterized protein 99.8 1.6E-21 5.6E-26 183.6 9.0 153 172-329 6-175 (186)
87 1n0r_A 4ANK, 4 ankyrin repeats 99.8 6.5E-20 2.2E-24 160.7 16.6 124 172-298 2-125 (126)
88 3ui2_A Signal recognition part 99.8 6.6E-21 2.3E-25 188.2 10.8 171 59-297 13-183 (244)
89 1n0r_A 4ANK, 4 ankyrin repeats 99.8 7.8E-20 2.7E-24 160.2 16.4 124 206-332 2-125 (126)
90 2jab_A H10-2-G3; HER2, darpin, 99.8 3E-20 1E-24 165.6 13.9 120 206-328 14-133 (136)
91 2jab_A H10-2-G3; HER2, darpin, 99.8 4.8E-20 1.6E-24 164.3 15.1 127 168-297 10-136 (136)
92 3deo_A Signal recognition part 99.8 7E-21 2.4E-25 179.2 9.1 142 119-296 40-181 (183)
93 3c5r_A BARD-1, BRCA1-associate 99.8 2.5E-20 8.7E-25 166.4 9.9 128 265-398 2-130 (137)
94 2b0o_E UPLC1; arfgap, structur 99.8 1.7E-19 5.8E-24 183.5 16.6 138 174-320 153-298 (301)
95 3deo_A Signal recognition part 99.8 1E-19 3.5E-24 171.2 11.8 140 169-330 41-181 (183)
96 3ui2_A Signal recognition part 99.8 1.8E-19 6E-24 177.9 12.4 110 170-283 43-153 (244)
97 3ehr_A Osteoclast-stimulating 99.8 7.4E-20 2.5E-24 177.9 9.0 138 116-272 66-204 (222)
98 3c5r_A BARD-1, BRCA1-associate 99.8 9.8E-20 3.3E-24 162.5 8.8 120 202-324 6-125 (137)
99 3ehr_A Osteoclast-stimulating 99.8 1.3E-19 4.5E-24 176.1 7.7 137 270-410 69-206 (222)
100 3aaa_C Myotrophin, protein V-1 99.8 6.3E-19 2.2E-23 154.0 10.6 108 171-281 6-113 (123)
101 2b0o_E UPLC1; arfgap, structur 99.8 4.7E-19 1.6E-23 180.2 11.2 139 206-354 151-298 (301)
102 3aaa_C Myotrophin, protein V-1 99.8 8.1E-19 2.8E-23 153.3 10.7 118 203-323 4-121 (123)
103 1dcq_A PYK2-associated protein 99.8 2.2E-17 7.4E-22 166.0 19.6 179 119-299 62-263 (278)
104 3jue_A Arfgap with coiled-coil 99.7 7.7E-18 2.6E-22 175.3 12.4 149 237-389 197-348 (368)
105 1dcq_A PYK2-associated protein 99.7 1.4E-17 4.7E-22 167.4 13.1 120 241-364 132-260 (278)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.7 1.1E-16 3.7E-21 132.2 12.7 92 122-230 1-92 (93)
107 1n0q_A 3ANK, 3 ankyrin repeats 99.7 9.3E-17 3.2E-21 132.5 12.3 91 206-298 2-92 (93)
108 3jue_A Arfgap with coiled-coil 99.7 7.2E-17 2.5E-21 167.9 14.4 147 204-353 197-348 (368)
109 3lvq_E ARF-GAP with SH3 domain 99.7 1.1E-16 3.9E-21 174.7 16.0 137 172-317 132-276 (497)
110 3lvq_E ARF-GAP with SH3 domain 99.7 1.6E-16 5.4E-21 173.6 14.4 124 208-334 134-266 (497)
111 2l6b_A NR1C; ankyrin, consensu 99.7 3.7E-17 1.3E-21 140.8 7.4 105 305-413 6-111 (115)
112 2l6b_A NR1C; ankyrin, consensu 99.7 6.7E-17 2.3E-21 139.2 8.0 109 269-382 4-112 (115)
113 2zgd_A 3 repeat synthetic anky 99.5 2.9E-14 1E-18 121.5 10.5 90 202-293 20-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.5 3.4E-14 1.2E-18 121.1 10.5 97 112-225 13-109 (110)
115 3rhw_A Avermectin-sensitive gl 72.4 43 0.0015 33.4 13.2 79 579-657 249-331 (347)
116 3tlw_A GLR4197 protein, GLIC; 56.3 1.1E+02 0.0037 29.9 12.4 77 579-655 232-310 (321)
117 1gp8_A Protein (scaffolding pr 34.5 21 0.00073 22.4 1.8 19 33-51 16-34 (40)
No 1
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.6e-52 Score=449.69 Aligned_cols=366 Identities=25% Similarity=0.297 Sum_probs=301.3
Q ss_pred CCCccccchhhchHHHHHHHHcCChhHHHhhhhccccc--cccCCCcceeeecccCCCCccccccccchhhhhhhccccc
Q 006054 19 GRLSVREKNFELMDSLYKAAVEGHTDQFRAHATMLDQI--LTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKK 96 (663)
Q Consensus 19 ~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~ 96 (663)
.|++++..+..|.||||.||..|+.+++++|++.+.++ .+..|.||||+| +..|+ .+++++|++.|++
T Consensus 3 ~g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A--~~~g~-------~~~v~~Ll~~g~~- 72 (437)
T 1n11_A 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMA--ARAGH-------TEVAKYLLQNKAK- 72 (437)
T ss_dssp ------------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHH--HHHTC-------HHHHHHHHHHTCC-
T ss_pred CCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH--HHcCC-------HHHHHHHHhCCCC-
Confidence 45677777888888888888888888888888875544 677788888888 88888 8888888733222
Q ss_pred cCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcch-----------hHHHHHHh
Q 006054 97 QSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKG-----------VEAVRLMQ 165 (663)
Q Consensus 97 ~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~-----------~~~~~~~l 165 (663)
++..+.+|.||||+|+..|+.++|++|+++|++++..+.... .+.+..++
T Consensus 73 -------------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 133 (437)
T 1n11_A 73 -------------------VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALL 133 (437)
T ss_dssp -------------------SSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred -------------------CCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 345666777777777777777777777777777665443221 11222222
Q ss_pred ------hCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCC
Q 006054 166 ------GMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMG 239 (663)
Q Consensus 166 ------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g 239 (663)
...+..|.||||+|+..|+.+++++|++.+.+.. ..+..|.||||+|+..|+.+++++|+++|.+++..+..|
T Consensus 134 ~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g 212 (437)
T 1n11_A 134 EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPN-AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNG 212 (437)
T ss_dssp HTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTC
T ss_pred hCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCC
Confidence 2346778999999999999999999999988765 577889999999999999999999999999999999999
Q ss_pred CCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcC
Q 006054 240 RTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKG 319 (663)
Q Consensus 240 ~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g 319 (663)
.||||.|+..++.+++++|++. |.+++..+..|.||||+|+..|+.+++++|++++.+. +..+..|.||||+|+..|
T Consensus 213 ~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~ 289 (437)
T 1n11_A 213 YTPLHIAAKQNQVEVARSLLQY--GGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEG 289 (437)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHT
T ss_pred CCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcC
Confidence 9999999999999999999998 7888999999999999999999999999999998877 677889999999999999
Q ss_pred CHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccc
Q 006054 320 RLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCH 398 (663)
Q Consensus 320 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~ 398 (663)
+.+++++|++.+.+. +..|..|+||||+|+.+|+.+++++|+++ |+++|.+|..|+||||+|+..++... ++|++
T Consensus 290 ~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~ 365 (437)
T 1n11_A 290 HVPVADVLIKHGVMV-DATTRMGYTPLHVASHYGNIKLVKFLLQH---QADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK 365 (437)
T ss_dssp CHHHHHHHHHHTCCT-TCCCSSCCCHHHHHHHSSCSHHHHHHHHT---TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHhCCccC-CCCCCCCCCHHHHHHHcCcHHHHHHHHhc---CCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH
Confidence 999999999997765 77899999999999999999999999999 89999999999999999999997755 99999
Q ss_pred cCcCccccccCCCChHHHHhhcc
Q 006054 399 PKVDRLAFNQNNCSAEDIIRSDK 421 (663)
Q Consensus 399 ~~ad~~~~n~~g~t~l~ia~~~~ 421 (663)
+|++++.+|.+|.||+++|...+
T Consensus 366 ~ga~~~~~~~~g~t~l~~A~~~g 388 (437)
T 1n11_A 366 NGASPNEVSSDGTTPLAIAKRLG 388 (437)
T ss_dssp TTCCSCCCCSSSCCHHHHHHHTT
T ss_pred CcCCCCCCCCCCCCHHHHHHHcC
Confidence 99999999999999999998654
No 2
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-51 Score=446.87 Aligned_cols=345 Identities=27% Similarity=0.308 Sum_probs=283.2
Q ss_pred cccccCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhc
Q 006054 55 QILTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHG 134 (663)
Q Consensus 55 ~~~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g 134 (663)
+..+..|.||||+| +..|+ .+++++|++.|++ ++..+..|.||||+|+..|
T Consensus 8 ~~~~~~g~t~L~~A--a~~g~-------~~~v~~Ll~~g~~--------------------~~~~~~~~~t~L~~A~~~g 58 (437)
T 1n11_A 8 GGGGESGLTPLHVA--SFMGH-------LPIVKNLLQRGAS--------------------PNVSNVKVETPLHMAARAG 58 (437)
T ss_dssp -------CCHHHHH--HHHTC-------HHHHHHHHHTTCC--------------------SCCSSSCCCCHHHHHHHHT
T ss_pred cccCCCCCCHHHHH--HHCCC-------HHHHHHHHHcCCC--------------------CCCCCCCCCCHHHHHHHcC
Confidence 34788999999999 99999 9999999933322 3566788999999999999
Q ss_pred cHHHHHHHHHhcCCCCCCCCcch-----------hHHHHHHh------hCCCcCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 006054 135 HADVVKDLIAECKKPHQNDPEKG-----------VEAVRLMQ------GMTNEAKDTALHEAARYNQIDVVKMLTKEDPS 197 (663)
Q Consensus 135 ~~~iv~~Ll~~~~~~~~~~~~~~-----------~~~~~~~l------~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 197 (663)
+.+++++|++.|++++..+.... .+.++.++ ...+..|.||||+|+..|+.+++++|++.+.+
T Consensus 59 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~ 138 (437)
T 1n11_A 59 HTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEAS 138 (437)
T ss_dssp CHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCC
Confidence 99999999999998876543321 12223332 34566788888888888888888888888776
Q ss_pred CCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChH
Q 006054 198 LPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLP 277 (663)
Q Consensus 198 ~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tp 277 (663)
.. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++. +.+++..+.+|.||
T Consensus 139 ~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~ 215 (437)
T 1n11_A 139 QA-CMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPR--GGSPHSPAWNGYTP 215 (437)
T ss_dssp SC-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGG--TCCSCCCCTTCCCH
T ss_pred Cc-CCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCcCCCCCCH
Confidence 54 4567788888888888888888888888888888888888999999999999999999888 67788888888999
Q ss_pred HHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHH
Q 006054 278 LHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRT 357 (663)
Q Consensus 278 Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~i 357 (663)
||+|+..|+.++++.|++.+.+. +..+..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..++.++
T Consensus 216 L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~-~~~~~~g~t~L~~A~~~~~~~~ 293 (437)
T 1n11_A 216 LHIAAKQNQVEVARSLLQYGGSA-NAESVQGVTPLHLAAQEGHAEMVALLLSKQANG-NLGNKSGLTPLHLVAQEGHVPV 293 (437)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHHTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHHcCCHHH
Confidence 99999999999999999988776 667888999999999999999999999887765 6788999999999999999999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCccccccCCCChHHHHhhccccCCccchhhHHHHh
Q 006054 358 IELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAFNQNNCSAEDIIRSDKLLFRPNEKNFMWCLN 436 (663)
Q Consensus 358 v~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~n~~g~t~l~ia~~~~~~~~~~~~~~~~~~~ 436 (663)
+++|+++ |.++|.+|..|+||||+|+..++... ++|+++|++++.+|..|.||||+|...... ..++
T Consensus 294 ~~~Ll~~---g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~---------~iv~ 361 (437)
T 1n11_A 294 ADVLIKH---GVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHT---------DIVT 361 (437)
T ss_dssp HHHHHHH---TCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH---------HHHH
T ss_pred HHHHHhC---CccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChH---------HHHH
Confidence 9999998 89999999999999999999997655 999999999999999999999999865432 3477
Q ss_pred hhhhccccc
Q 006054 437 RLNRFRCRR 445 (663)
Q Consensus 437 ~l~~~~~~~ 445 (663)
+|.+.|+..
T Consensus 362 ~Ll~~ga~~ 370 (437)
T 1n11_A 362 LLLKNGASP 370 (437)
T ss_dssp HHHHTTCCS
T ss_pred HHHHCcCCC
Confidence 777766653
No 3
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.6e-40 Score=341.66 Aligned_cols=291 Identities=20% Similarity=0.162 Sum_probs=229.2
Q ss_pred CCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccC-CCCCcHHHHHHHhccHHH
Q 006054 60 NENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTN-TKGETLLHIAARHGHADV 138 (663)
Q Consensus 60 ~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~-~~g~T~Lh~A~~~g~~~i 138 (663)
+|+|+||.| +..|+ .++|++|++.|++ ++..+ ..|.||||+|+..|+.++
T Consensus 24 ~~~t~L~~A--v~~g~-------~~~V~~LL~~Gad--------------------vn~~~~~~g~TpLh~A~~~g~~~i 74 (337)
T 4g8k_A 24 EDNHLLIKA--VQNED-------VDLVQQLLEGGAN--------------------VNFQEEEGGWTPLHNAVQMSREDI 74 (337)
T ss_dssp HHHHHHHHH--HHTTC-------HHHHHHHHHHTCC--------------------TTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred CCChHHHHH--HHcCC-------HHHHHHHHHCCCC--------------------CCccCCCCCcCHHHHHHHcCCHHH
Confidence 355666666 66666 6666666632222 22333 358889999999999999
Q ss_pred HHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCC
Q 006054 139 VKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGY 218 (663)
Q Consensus 139 v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 218 (663)
|++|+++|++++. ++..+.++++.++..+..+.+..+++.+.++. ..+..|.||||+|+..|+
T Consensus 75 v~~Ll~~ga~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~~g~t~l~~A~~~~~ 137 (337)
T 4g8k_A 75 VELLLRHGADPVL----------------RKKNGATPFILAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGK 137 (337)
T ss_dssp HHHHHHTTCCTTC----------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CBCTTCCBHHHHHHHTTC
T ss_pred HHHHHHcCCchhh----------------hccCCCchhHHHHhcccchhhHHhhhccchhh-hhccCCCCHHHHHHHcCc
Confidence 9999988887765 66778888888888888888888888887765 577888899999999999
Q ss_pred HHHHHHHHHhCCCCCCC----------CCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCC--
Q 006054 219 KDVTQDILLTCKSPADH----------GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGY-- 286 (663)
Q Consensus 219 ~eiv~~Ll~~~~~~~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~-- 286 (663)
.+++++|+++|++++.. +..|.||||.|+..|+.+++++|+++. |++++.+|..|.||+|.++..+.
T Consensus 138 ~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~-gad~n~~d~~g~t~l~~~~~~~~~~ 216 (337)
T 4g8k_A 138 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDS 216 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHHSCTT
T ss_pred HHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhcc-CCCcCccCCCCCcHHHHHHHHcCcc
Confidence 99999988888776543 345788999999999999999988643 58888888899999988776554
Q ss_pred --HHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 287 --YNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 287 --~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
.+++++|+++++++ +.+|.+|.||||+|+..|+.++++.|++..+..++.+|..|+||||+|+++|+.+++++|+++
T Consensus 217 ~~~~i~~lLl~~gad~-n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ 295 (337)
T 4g8k_A 217 DVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 295 (337)
T ss_dssp THHHHHHHHHHTTCCT-TCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTT
T ss_pred cHHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHC
Confidence 35778888888877 667888999999999999999999988877767788889999999999999999999999988
Q ss_pred CCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCcccc
Q 006054 365 PSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAF 406 (663)
Q Consensus 365 ~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~ 406 (663)
|+++|.+ ||||+|+..++..+ ++|+++||++|..
T Consensus 296 ---GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~GA~~d~~ 330 (337)
T 4g8k_A 296 ---GASTDCG-----DLVMTARRNYDHSLVKVLLSHGAKEDFH 330 (337)
T ss_dssp ---SCSSTTC-----CHHHHHHHTTCHHHHHHHHHTTCCC---
T ss_pred ---CCCCCCC-----CHHHHHHHcCCHHHHHHHHHCcCCCCCC
Confidence 7877654 59999998886644 8899999988754
No 4
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=2.8e-39 Score=336.97 Aligned_cols=294 Identities=22% Similarity=0.210 Sum_probs=256.4
Q ss_pred cchhhchHHHHHHHHcCChhHHHhhhhccccc--ccc-CCCcceeeecccCCCCccccccccchhhhhhhccccccCCCc
Q 006054 25 EKNFELMDSLYKAAVEGHTDQFRAHATMLDQI--LTP-NENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSS 101 (663)
Q Consensus 25 ~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~-~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~ 101 (663)
..+.++.|+|+.||+.||+++|++|++.|.++ ++. .|.||||+| +..|+ .+++++|+++|++
T Consensus 20 ~~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A--~~~g~-------~~iv~~Ll~~ga~------ 84 (337)
T 4g8k_A 20 RAAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNA--VQMSR-------EDIVELLLRHGAD------ 84 (337)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHH--HHTTC-------HHHHHHHHHTTCC------
T ss_pred CCCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHH--HHcCC-------HHHHHHHHHcCCc------
Confidence 34566788999999999999999999998776 444 599999999 99999 9999999944433
Q ss_pred chhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHH
Q 006054 102 EHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAAR 181 (663)
Q Consensus 102 ~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~ 181 (663)
++..+..+.+|++.++..++..++..+++.+.+.+. .+..|.||||+|+.
T Consensus 85 --------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~d~~g~t~l~~A~~ 134 (337)
T 4g8k_A 85 --------------PVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNE----------------CDFYGFTAFMEAAV 134 (337)
T ss_dssp --------------TTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC----------------BCTTCCBHHHHHHH
T ss_pred --------------hhhhccCCCchhHHHHhcccchhhHHhhhccchhhh----------------hccCCCCHHHHHHH
Confidence 456788999999999999999999999999887765 78889999999999
Q ss_pred cCCHHHHHHHHHcCCCCCC---------CCCCCCCcHHHHHHHcCCHHHHHHHHH-hCCCCCCCCCCCCCHHHHHHhcCC
Q 006054 182 YNQIDVVKMLTKEDPSLPY---------DANNAGETPLYVAAERGYKDVTQDILL-TCKSPADHGPMGRTALHAAAFRND 251 (663)
Q Consensus 182 ~g~~~iv~~Ll~~~~~~~~---------~~~~~g~tpL~~A~~~g~~eiv~~Ll~-~~~~~~~~~~~g~t~L~~A~~~~~ 251 (663)
.|+.+++++|++.++++.. ..+..|.||||+|+..|+.+++++|++ .|++++..+..|.|++|.++..+.
T Consensus 135 ~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~ 214 (337)
T 4g8k_A 135 YGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSD 214 (337)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSC
T ss_pred cCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHHHHHHHcC
Confidence 9999999999999877542 234578999999999999999999996 489999999999999998876443
Q ss_pred ----HHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHH
Q 006054 252 ----TEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327 (663)
Q Consensus 252 ----~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L 327 (663)
.+++++|++. |++++.+|.+|.||||+|+..|+.++++.|++......+.+|.+|.||||+|++.|+.++++.|
T Consensus 215 ~~~~~~i~~lLl~~--gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~L 292 (337)
T 4g8k_A 215 DSDVEAITHLLLDH--GADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 292 (337)
T ss_dssp TTTHHHHHHHHHHT--TCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHH
Confidence 4688999998 8999999999999999999999999999999865444478899999999999999999999999
Q ss_pred HHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 006054 328 IMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEK 374 (663)
Q Consensus 328 l~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~ 374 (663)
++++.+. ++.+|||+|+++++.+++++|+++ |+++|..
T Consensus 293 l~~GAd~------n~~~~L~~A~~~~~~~iv~~Ll~~---GA~~d~~ 330 (337)
T 4g8k_A 293 CKRGAST------DCGDLVMTARRNYDHSLVKVLLSH---GAKEDFH 330 (337)
T ss_dssp HTTSCSS------TTCCHHHHHHHTTCHHHHHHHHHT---TCCC---
T ss_pred HHCCCCC------CCCCHHHHHHHcCCHHHHHHHHHC---cCCCCCC
Confidence 9998754 456799999999999999999999 8988864
No 5
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=6e-39 Score=325.31 Aligned_cols=265 Identities=21% Similarity=0.214 Sum_probs=243.2
Q ss_pred CCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 006054 122 KGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYD 201 (663)
Q Consensus 122 ~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 201 (663)
+|.||||.|++.|+.+++++|++.|.+++. ..+..|.||||+|+..|+.+++++|++.+++.. .
T Consensus 4 ~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~---------------~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~ 67 (285)
T 1wdy_A 4 EDNHLLIKAVQNEDVDLVQQLLEGGANVNF---------------QEEEGGWTPLHNAVQMSREDIVELLLRHGADPV-L 67 (285)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCCTTC---------------CCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCccc---------------ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCc-c
Confidence 478999999999999999999999987765 236778999999999999999999999998865 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcC----------C
Q 006054 202 ANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKA----------D 271 (663)
Q Consensus 202 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~----------d 271 (663)
.+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++. |.+++.. +
T Consensus 68 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~~~~~~~~~ 145 (285)
T 1wdy_A 68 RKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKR--GANVNLRRKTKEDQERLR 145 (285)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCCCHHHHHTT
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHh--CCCcccccccHHHHHhhc
Confidence 788899999999999999999999999999999999999999999999999999999998 6677666 7
Q ss_pred CCCChHHHHHHHcCCHHHHHHHHhc-CccccccCCCCCChHHHHHHhcCC----HHHHHHHHHcCCCCcccccCCCCcHH
Q 006054 272 QQGWLPLHLAAHLGYYNVVKELLKA-DKSAAYKADNEGKIPLHLAAGKGR----LNTVQELIMSCPSSCELVDDRGWNVF 346 (663)
Q Consensus 272 ~~g~tpLh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpLh~Aa~~g~----~~~v~~Ll~~~~~~~~~~d~~g~t~L 346 (663)
..|.||||.|+..|+.+++++|++. +.+. +..+..|.||||+|+..++ .++++.|++.+.+. +..|..|+|||
T Consensus 146 ~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~-~~~~~~g~t~L 223 (285)
T 1wdy_A 146 KGGATALMDAAEKGHVEVLKILLDEMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV-NVRGERGKTPL 223 (285)
T ss_dssp CCCCCHHHHHHHHTCHHHHHHHHHTSCCCT-TCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCS-SCCCTTSCCHH
T ss_pred cCCCcHHHHHHHcCCHHHHHHHHHhcCCCC-CccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCC-CCcCCCCCcHH
Confidence 8899999999999999999999997 6655 7789999999999999999 99999999988765 77899999999
Q ss_pred HHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCcccccc
Q 006054 347 HFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAFNQ 408 (663)
Q Consensus 347 h~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~n~ 408 (663)
|+|+.+++.+++++|++.. |.+++.+|..|+||||+|+..++... ++|+++|++++.+|.
T Consensus 224 ~~A~~~~~~~~v~~Ll~~~--g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~Ga~~~~~d~ 284 (285)
T 1wdy_A 224 ILAVEKKHLGLVQRLLEQE--HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284 (285)
T ss_dssp HHHHHTTCHHHHHHHHHSS--SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred HHHHHcCCHHHHHHHHhcc--CCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCCcccc
Confidence 9999999999999999943 89999999999999999999997755 999999999998873
No 6
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=1.9e-38 Score=332.03 Aligned_cols=334 Identities=19% Similarity=0.119 Sum_probs=268.3
Q ss_pred hccCCCccccchhhchHHHHHHHHcCChhHHHhhhhc-cc--cccccCCCcceeeecccCCCCccccccccchhhhhhhc
Q 006054 16 RRAGRLSVREKNFELMDSLYKAAVEGHTDQFRAHATM-LD--QILTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMS 92 (663)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~-~~--~~~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~ 92 (663)
+...+.+.+..+..+.++|+.||+.|+.+.++.+++. +. +.++..|.||||+| +..|+ .+++++|++.
T Consensus 10 l~~~~~~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A--~~~g~-------~~~v~~Ll~~ 80 (351)
T 3utm_A 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLA--AGYNR-------VRIVQLLLQH 80 (351)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHH--HHTTC-------HHHHHHHHHT
T ss_pred ccCCceeeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHH--HHcCC-------HHHHHHHHHc
Confidence 3445566667778888999999999999999988876 44 44888999999999 99999 9999999933
Q ss_pred cccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCC
Q 006054 93 TFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAK 172 (663)
Q Consensus 93 ~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 172 (663)
|+ .++..|..|.||||+|+..|+.+++++|+++|++++. .+..|
T Consensus 81 g~--------------------~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~----------------~~~~g 124 (351)
T 3utm_A 81 GA--------------------DVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA----------------MDLWQ 124 (351)
T ss_dssp TC--------------------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTC
T ss_pred CC--------------------CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCC----------------CCCCC
Confidence 22 2466788999999999999999999999999988765 67789
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCH
Q 006054 173 DTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDT 252 (663)
Q Consensus 173 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 252 (663)
.||||+|+..|+.+++++|++++.+.. ..+..|.+|+++|+..+..+.+.+... ..++..++..++.
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~~~l~~a~~~~~~~~~~~~~~------------~~~~~~~~~~~~~ 191 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPT-LVNCHGKSAVDMAPTPELRERLTYEFK------------GHSLLQAAREADL 191 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHCSSHHHHHHHHHHHH------------HHHHHHHHHTTCH
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCc-cccCCCCcchHHHhhhhhHHHHHhhhc------------ccHHHHHHHhccH
Confidence 999999999999999999999988865 678889999999998888888877664 2467888889999
Q ss_pred HHHHHHHhcccCCCCCcCCCCCChHHHHHHHc---CCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHH
Q 006054 253 EMTKVLLDSSIGTQTSKADQQGWLPLHLAAHL---GYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329 (663)
Q Consensus 253 ~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~ 329 (663)
+.++.++.. +......+..|.||||+|+.. +..+++++|++.+.+. +..+.+|.||||+|+..|+.+++++|++
T Consensus 192 ~~~~~~l~~--~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~ 268 (351)
T 3utm_A 192 AKVKKTLAL--EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHK 268 (351)
T ss_dssp HHHHHHTTT--CCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHh--hcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 999998877 445556778899999999999 5588999999999887 6778899999999999999999999999
Q ss_pred cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCcccccccccCcCccccccC
Q 006054 330 SCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIPSFVCHPKVDRLAFNQN 409 (663)
Q Consensus 330 ~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~~lL~~~~ad~~~~n~~ 409 (663)
.+.+. +.+|..|+||||+|+.+|+.+++++|+++ |++++.+|..|+||+|+|... ..++|.+.+. .....
T Consensus 269 ~ga~~-n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~~~~g~tal~~a~~~---~~~~l~~~~~---~~~~~ 338 (351)
T 3utm_A 269 HGAKM-NALDSLGQTALHRAALAGHLQTCRLLLSY---GSDPSIISLQGFTAAQMGNEA---VQQILSESTP---MRTSD 338 (351)
T ss_dssp TTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCHHHHSCHH---HHHHHHHC----------
T ss_pred CCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCCCcCCCCCChhhhhhHH---HHHHHHhccc---cccCc
Confidence 87765 77899999999999999999999999998 899999999999999998432 2255544432 23345
Q ss_pred CCChHHHHhhc
Q 006054 410 NCSAEDIIRSD 420 (663)
Q Consensus 410 g~t~l~ia~~~ 420 (663)
+.+++..|.+.
T Consensus 339 ~~~~l~~A~~~ 349 (351)
T 3utm_A 339 VDYRLLEASKA 349 (351)
T ss_dssp -----------
T ss_pred ceeehhhhhcc
Confidence 55666665543
No 7
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.9e-39 Score=337.22 Aligned_cols=298 Identities=19% Similarity=0.163 Sum_probs=254.4
Q ss_pred cccCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccH
Q 006054 57 LTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHA 136 (663)
Q Consensus 57 ~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~ 136 (663)
.+..+.++||.| +..|+ .+.++.++ ...+..++..|..|.||||+|+..|+.
T Consensus 20 ~~~~~~~~L~~A--~~~g~-------~~~v~~ll-------------------~~~~~~~~~~d~~g~t~L~~A~~~g~~ 71 (351)
T 3utm_A 20 TGEYKKDELLEA--ARSGN-------EEKLMALL-------------------TPLNVNCHASDGRKSTPLHLAAGYNRV 71 (351)
T ss_dssp HHHHHHHHHHHH--HHHTC-------HHHHHHHC-------------------CTTTTTCCCSSTTCCCHHHHHHHTTCH
T ss_pred eccccchhHHHH--HHcCC-------HHHHHHHH-------------------HhcCCCcccCCCCCCCHHHHHHHcCCH
Confidence 566778889999 88998 88888887 223344566778888999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHc
Q 006054 137 DVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAER 216 (663)
Q Consensus 137 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 216 (663)
++|++|++.|++++. ++..|.||||+|+..|+.+++++|+++++++. ..+..|.||||+|+..
T Consensus 72 ~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~-~~~~~g~t~L~~A~~~ 134 (351)
T 3utm_A 72 RIVQLLLQHGADVHA----------------KDKGGLVPLHNACSYGHYEVTELLLKHGACVN-AMDLWQFTPLHEAASK 134 (351)
T ss_dssp HHHHHHHHTTCCTTC----------------CCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHcCCCCCc----------------cCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHc
Confidence 999999988887665 67778899999999999999999998888765 5677888999999999
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhc
Q 006054 217 GYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKA 296 (663)
Q Consensus 217 g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ 296 (663)
|+.+++++|+++|++++..+..|.+|++.|+..+..+.+.+.... +++..++..+..+.++.++..
T Consensus 135 ~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~ 200 (351)
T 3utm_A 135 NRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG--------------HSLLQAAREADLAKVKKTLAL 200 (351)
T ss_dssp TCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHH--------------HHHHHHHHTTCHHHHHHHTTT
T ss_pred CCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcc--------------cHHHHHHHhccHHHHHHHHHh
Confidence 999999999999888888888889999888877777766665532 467788889999999888887
Q ss_pred CccccccCCCCCChHHHHHHhc---CCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCC
Q 006054 297 DKSAAYKADNEGKIPLHLAAGK---GRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNE 373 (663)
Q Consensus 297 ~~~~~~~~~~~g~tpLh~Aa~~---g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~ 373 (663)
.... ...+..|.||||+|+.. +..++++.|++.+.+. +..|..|+||||+|+.+|+.+++++|+++ |+++|.
T Consensus 201 ~~~~-~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---ga~~n~ 275 (351)
T 3utm_A 201 EIIN-FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV-NEKNKDFMTPLHVAAERAHNDVMEVLHKH---GAKMNA 275 (351)
T ss_dssp CCTT-CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHT---TCCTTC
T ss_pred hccc-ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc-CCcCCCCCCHHHHHHHcCCHHHHHHHHHC---CCCCCC
Confidence 6544 55678899999999999 5689999999988775 77899999999999999999999999999 999999
Q ss_pred CCCCCCcHHHHHHhCCCccc-ccccccCcCccccccCCCChHHHHh
Q 006054 374 KNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAFNQNNCSAEDIIR 418 (663)
Q Consensus 374 ~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~n~~g~t~l~ia~ 418 (663)
+|..|+||||+|+..++... ++|+++|+|++.+|..|.||++++.
T Consensus 276 ~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 276 LDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGN 321 (351)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHSC
T ss_pred cCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhhhhh
Confidence 99999999999999997755 9999999999999999999999984
No 8
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=2.9e-38 Score=320.26 Aligned_cols=268 Identities=21% Similarity=0.200 Sum_probs=242.0
Q ss_pred cCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHHH
Q 006054 59 PNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADV 138 (663)
Q Consensus 59 ~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~i 138 (663)
.+|.|+||.| +..|+ .+++++|++.+++ .-...+..|.||||+|+..|+.++
T Consensus 3 ~~g~~~L~~A--~~~g~-------~~~v~~Ll~~g~~-------------------~~~~~~~~g~t~L~~A~~~g~~~~ 54 (285)
T 1wdy_A 3 VEDNHLLIKA--VQNED-------VDLVQQLLEGGAN-------------------VNFQEEEGGWTPLHNAVQMSREDI 54 (285)
T ss_dssp HHHHHHHHHH--HHTTC-------HHHHHHHHHTTCC-------------------TTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred cccchHHHHH--HHcCC-------HHHHHHHHHcCCC-------------------cccccCCCCCcHHHHHHHcCCHHH
Confidence 3578999999 99999 9999999833221 112236789999999999999999
Q ss_pred HHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCC
Q 006054 139 VKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGY 218 (663)
Q Consensus 139 v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 218 (663)
+++|++.|++++. ++..|.||||+|+..|+.+++++|+++++++. ..+..|.||||+|+..|+
T Consensus 55 v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~ 117 (285)
T 1wdy_A 55 VELLLRHGADPVL----------------RKKNGATPFLLAAIAGSVKLLKLFLSKGADVN-ECDFYGFTAFMEAAVYGK 117 (285)
T ss_dssp HHHHHHTTCCTTC----------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-CBCTTCCBHHHHHHHTTC
T ss_pred HHHHHHcCCCCcc----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-ccCcccCCHHHHHHHhCC
Confidence 9999999988765 67889999999999999999999999998865 678899999999999999
Q ss_pred HHHHHHHHHhCCCCCCC----------CCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCC--
Q 006054 219 KDVTQDILLTCKSPADH----------GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGY-- 286 (663)
Q Consensus 219 ~eiv~~Ll~~~~~~~~~----------~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~-- 286 (663)
.+++++|++.|++++.. +..|.||||.|+..++.+++++|++.. |.+++..|..|.||||+|+..++
T Consensus 118 ~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~l~~a~~~~~~~ 196 (285)
T 1wdy_A 118 VKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDS 196 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTT
T ss_pred HHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhc-CCCCCccCCCCCCHHHHHHHccccc
Confidence 99999999999998876 778999999999999999999999864 48899999999999999999999
Q ss_pred --HHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 287 --YNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 287 --~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++..+..++..|..|+||||+|+++++.+++++|+++
T Consensus 197 ~~~~i~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~ 275 (285)
T 1wdy_A 197 DVEAITHLLLDHGADV-NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKR 275 (285)
T ss_dssp THHHHHHHHHHTTCCS-SCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHc
Confidence 99999999999887 678899999999999999999999999966666788999999999999999999999999999
Q ss_pred CCCCCCCCCCCC
Q 006054 365 PSLGNLVNEKND 376 (663)
Q Consensus 365 ~~~~~~in~~d~ 376 (663)
|++++.+|.
T Consensus 276 ---Ga~~~~~d~ 284 (285)
T 1wdy_A 276 ---GASTDCGDL 284 (285)
T ss_dssp ---SSCSCCSSC
T ss_pred ---CCCCCcccc
Confidence 999998873
No 9
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.8e-39 Score=339.73 Aligned_cols=312 Identities=18% Similarity=0.189 Sum_probs=227.2
Q ss_pred HHHHHHHcCChhHHHhhhhccccccccCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcC
Q 006054 33 SLYKAAVEGHTDQFRAHATMLDQILTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMC 112 (663)
Q Consensus 33 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~ 112 (663)
+|..|+..|+.+.++.+++...++. .-.++++-+ ...|+ .+++++++
T Consensus 40 ~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~--~~~g~-------~~~~~~~~---------------------- 86 (373)
T 2fo1_E 40 SLLEASYDGYIKRQRNELQHYSLYP--NPQGYGNGN--DFLGD-------FNHTNLQI---------------------- 86 (373)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccCCccccchhhhhhhhcccc--CccccCCCC--Ccccc-------cccccccc----------------------
Confidence 8899999999999998888744432 223456667 88888 88888887
Q ss_pred hhhhhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCC-cCCChHHHHHHHcCCHHHHHHH
Q 006054 113 PGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTN-EAKDTALHEAARYNQIDVVKML 191 (663)
Q Consensus 113 ~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~g~~~iv~~L 191 (663)
....+..|.||||+|+..++ ++++.|++. +.+ ..+ ..|.||||+|+..|+.+++++|
T Consensus 87 ---~~~~~~~g~t~L~~Aa~~~~-~~~~~L~~~--~~n----------------~~d~~~g~t~Lh~Aa~~g~~~~v~~L 144 (373)
T 2fo1_E 87 ---PTEPEPESPIKLHTEAAGSY-AITEPITRE--SVN----------------IIDPRHNRTVLHWIASNSSAEKSEDL 144 (373)
T ss_dssp ----------CCCHHHHHHHSSS-CCCSCCSTT--TTT----------------TCCCSSCCCHHHHHHCTTCCSCCTTH
T ss_pred ---ccCCCCCCccHHHHHhcCCc-hHHHHhccc--ccc----------------ccCCcCCCCHHHHHHHCCCHHHHHHH
Confidence 23567889999999999554 777777542 222 245 6899999999999999887777
Q ss_pred H--------HcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhccc
Q 006054 192 T--------KEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSI 263 (663)
Q Consensus 192 l--------~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 263 (663)
+ +.+.+++ ..|..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++.+.
T Consensus 145 l~~~~~~ll~~ga~vn-~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~ 223 (373)
T 2fo1_E 145 IVHEAKECIAAGADVN-AMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTK 223 (373)
T ss_dssp HHHHHHHHHHTCCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHH
T ss_pred HHHHHHHHHhcCCCCc-CCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCc
Confidence 6 6777765 678899999999999999999999999999999999999999999999999999999998831
Q ss_pred -CCCCCcCCCCCChHHHHHHHcC---CHHHHHHHHhcCccccc-------cCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 006054 264 -GTQTSKADQQGWLPLHLAAHLG---YYNVVKELLKADKSAAY-------KADNEGKIPLHLAAGKGRLNTVQELIMSCP 332 (663)
Q Consensus 264 -g~~~~~~d~~g~tpLh~A~~~g---~~~iv~~Ll~~~~~~~~-------~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~ 332 (663)
+.+++..|.+|.||||+|+..+ +.+++++|++.+.+... ..|..|.||||+|+..|+.+++++|++.++
T Consensus 224 ~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~ 303 (373)
T 2fo1_E 224 LKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKG 303 (373)
T ss_dssp HHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSC
T ss_pred cccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcC
Confidence 1688899999999999999998 89999999999887632 256789999999999999999999999987
Q ss_pred CCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCc
Q 006054 333 SSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDR 403 (663)
Q Consensus 333 ~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~ 403 (663)
..++..|..|+||||+|+.+|+.+++++|+++ |++++.+|..|+||||+|+..++..+ ++|++++++.
T Consensus 304 ~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~---gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~a~~ 372 (373)
T 2fo1_E 304 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ---GASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372 (373)
T ss_dssp CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT---TCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC---
T ss_pred CCccCcCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcCccc
Confidence 77799999999999999999999999999998 99999999999999999999997755 8998888753
No 10
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1e-36 Score=309.46 Aligned_cols=269 Identities=16% Similarity=0.090 Sum_probs=204.0
Q ss_pred cCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 006054 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSL 198 (663)
Q Consensus 119 ~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 198 (663)
-...|.|+||+|+..|+.+.+..++..+....... ......+..++..|.||||+|+..|+.+++++|++.+.++
T Consensus 11 ~~~~~~~~lH~Aa~~g~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~ 85 (285)
T 3d9h_A 11 SSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGI-----RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAV 85 (285)
T ss_dssp -------------------------------CCSE-----ECCCCTTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHHhhcCCCCCcccCCCCccccccch-----hhhhCcccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 34679999999999999887777776543311000 0000113457889999999999999999999999999886
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHH
Q 006054 199 PYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278 (663)
Q Consensus 199 ~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpL 278 (663)
. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++.+++++|++. |.+++.. .+|.|||
T Consensus 86 ~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~-~~g~t~L 161 (285)
T 3d9h_A 86 N-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH--GASVQPE-SDLASPI 161 (285)
T ss_dssp C-EECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSSCS-CTTSCHH
T ss_pred C-CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHC--CCCCCCC-CCCCCHH
Confidence 5 6788999999999999999999999999999999999999999999999999999999998 6666654 4599999
Q ss_pred HHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHH
Q 006054 279 HLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358 (663)
Q Consensus 279 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv 358 (663)
|+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.++++.|++.+.+.. .|..|+||||+|+.+++.+++
T Consensus 162 ~~A~~~g~~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~g~t~L~~A~~~~~~~~v 238 (285)
T 3d9h_A 162 HEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLESGADVN--QGKGQDSPLHAVVRTASEELA 238 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTBCHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC--CCCCCCCHHHHHHHcCCHHHH
Confidence 9999999999999999999887 6788999999999999999999999999987764 488999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccccccccc-CcCc
Q 006054 359 ELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIPSFVCHP-KVDR 403 (663)
Q Consensus 359 ~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~~lL~~~-~ad~ 403 (663)
++|+++ |++++.+|.+|+||||+|+.. ..++++|++. |+++
T Consensus 239 ~~Ll~~---gad~~~~d~~g~t~l~~A~~~-~~~~~~Ll~~~~a~l 280 (285)
T 3d9h_A 239 CLLMDF---GADTQAKNAEGKRPVELVPPE-SPLAQLFLEREGASL 280 (285)
T ss_dssp HHHHHT---TCCTTCCCTTSCCGGGGSCTT-SHHHHHHHHHC----
T ss_pred HHHHHC---CCCCCCcCCCCCCHHHHhcCc-cHHHHHHHHhhccCC
Confidence 999998 999999999999999999944 3344666555 6554
No 11
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.9e-37 Score=324.36 Aligned_cols=277 Identities=22% Similarity=0.213 Sum_probs=224.9
Q ss_pred HHHHHHHcCChhHHHhhhhccccccccCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcC
Q 006054 33 SLYKAAVEGHTDQFRAHATMLDQILTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMC 112 (663)
Q Consensus 33 ~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~ 112 (663)
++..+...|+++.+++++... .+..|.|+||+| +. |+ .+++++|+ .
T Consensus 69 ~~~~~~~~g~~~~~~~~~~~~---~~~~g~t~L~~A--a~-~~-------~~~~~~L~-------------------~-- 114 (373)
T 2fo1_E 69 YGNGNDFLGDFNHTNLQIPTE---PEPESPIKLHTE--AA-GS-------YAITEPIT-------------------R-- 114 (373)
T ss_dssp ----------------------------CCCHHHHH--HH-SS-------SCCCSCCS-------------------T--
T ss_pred cCCCCCccccccccccccccC---CCCCCccHHHHH--hc-CC-------chHHHHhc-------------------c--
Confidence 456777889999998876653 578899999999 88 55 57888876 1
Q ss_pred hhhhhccC-CCCCcHHHHHHHhccHHHHHHHH--------HhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcC
Q 006054 113 PGLLLKTN-TKGETLLHIAARHGHADVVKDLI--------AECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYN 183 (663)
Q Consensus 113 ~~ll~~~~-~~g~T~Lh~A~~~g~~~iv~~Ll--------~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g 183 (663)
..++..| ..|.||||+|+..|+.+++++|+ +.|++++. +|..|.||||+|+..|
T Consensus 115 -~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~----------------~d~~g~TpL~~A~~~g 177 (373)
T 2fo1_E 115 -ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA----------------MDCDENTPLMLAVLAR 177 (373)
T ss_dssp -TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC----------------CCTTSCCHHHHHHHHT
T ss_pred -ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcC----------------CCCCCCCHHHHHHHcC
Confidence 1234555 78999999999999998888776 67887665 7888999999999999
Q ss_pred CHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC---CCCCCCCCCCCCHHHHHHhcC---CHHHHHH
Q 006054 184 QIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTC---KSPADHGPMGRTALHAAAFRN---DTEMTKV 257 (663)
Q Consensus 184 ~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~---~~~~~~~~~g~t~L~~A~~~~---~~~~v~~ 257 (663)
+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++++ .+++..+..|.||||.|+..+ +.+++++
T Consensus 178 ~~~iv~~Ll~~ga~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~ 256 (373)
T 2fo1_E 178 RRRLVAYLMKAGADPT-IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKL 256 (373)
T ss_dssp CHHHHHHHHHTTCCSC-CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHH
T ss_pred hHHHHHHHHHCCCCCc-ccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHH
Confidence 9999999999999875 67889999999999999999999999988 789999999999999999998 8999999
Q ss_pred HHhcccCCCCCc--------CCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHH
Q 006054 258 LLDSSIGTQTSK--------ADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329 (663)
Q Consensus 258 Ll~~~~g~~~~~--------~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~ 329 (663)
|++. |.+++. .|..|.||||+|+..|+.+++++|++.+....+..|.+|.||||+|+..|+.++++.|++
T Consensus 257 Ll~~--g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~ 334 (373)
T 2fo1_E 257 LVEK--GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ 334 (373)
T ss_dssp HHHH--TCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH
T ss_pred HHHC--CCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence 9999 666664 677999999999999999999999998744447889999999999999999999999999
Q ss_pred cCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 330 SCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 330 ~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
.+.+. +..|..|+||||+|+.+|+.+++++|+++
T Consensus 335 ~gad~-~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~ 368 (373)
T 2fo1_E 335 QGASV-EAVDATDHTARQLAQANNHHNIVDIFDRC 368 (373)
T ss_dssp TTCCS-SCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred cCCCc-cCCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 87765 77899999999999999999999999987
No 12
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=4.2e-36 Score=304.99 Aligned_cols=270 Identities=18% Similarity=0.146 Sum_probs=208.4
Q ss_pred cccCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccH
Q 006054 57 LTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHA 136 (663)
Q Consensus 57 ~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~ 136 (663)
-+.+|.|+||+| +..|+ .+.+..++..+...... . ......+...+..|.||||+|+..|+.
T Consensus 11 ~~~~~~~~lH~A--a~~g~-------~~~~~~~~~~~~~~~~~------~---~l~~~~~~~~~~~g~t~L~~Aa~~g~~ 72 (285)
T 3d9h_A 11 SSGLVPRGSHMA--SMDGK-------QGGMDGSKPAGPRDFPG------I---RLLSNPLMGDAVSDWSPMHEAAIHGHQ 72 (285)
T ss_dssp ----------------------------------------CCS------E---ECCCCTTCSSSCCSCCHHHHHHHTTCH
T ss_pred cchHHHHHHHHH--hhcCC-------CCCcccCCCCccccccc------h---hhhhCcccCCCccCCCHHHHHHHcCCH
Confidence 456899999999 99999 77666655221110000 0 001122466889999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHc
Q 006054 137 DVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAER 216 (663)
Q Consensus 137 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~ 216 (663)
+++++|++.|.+++. ++..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..
T Consensus 73 ~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~-~~~~~g~t~L~~A~~~ 135 (285)
T 3d9h_A 73 LSLRNLISQGWAVNI----------------ITADHVSPLHEACLGGHLSCVKILLKHGAQVN-GVTADWHTPLFNACVS 135 (285)
T ss_dssp HHHHHHHHTTCCSCE----------------ECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHH
T ss_pred HHHHHHHHCCCCCCC----------------cCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCC-CCCCCCCCHHHHHHHc
Confidence 999999999987664 77889999999999999999999999998865 6788999999999999
Q ss_pred CCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhc
Q 006054 217 GYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKA 296 (663)
Q Consensus 217 g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~ 296 (663)
|+.+++++|++.|++++..+ .|.||||.|+..|+.+++++|++. |.+++.+|.+|.||||+|+..|+.+++++|++.
T Consensus 136 ~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ 212 (285)
T 3d9h_A 136 GSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAY--GGNIDHKISHLGTPLYLACENQQRACVKKLLES 212 (285)
T ss_dssp TCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHT--TCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHC
Confidence 99999999999999887544 599999999999999999999998 789999999999999999999999999999999
Q ss_pred CccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC
Q 006054 297 DKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLV 371 (663)
Q Consensus 297 ~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~i 371 (663)
+.+.. .+..|.||||+|+..|+.+++++|++.+.+. +.+|..|+||||+|+ ++.+++++|+++. ++++
T Consensus 213 ga~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~t~l~~A~--~~~~~~~~Ll~~~--~a~l 280 (285)
T 3d9h_A 213 GADVN--QGKGQDSPLHAVVRTASEELACLLMDFGADT-QAKNAEGKRPVELVP--PESPLAQLFLERE--GASL 280 (285)
T ss_dssp TCCTT--CCBTTBCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSC--TTSHHHHHHHHHC------
T ss_pred CCCCC--CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHhc--CccHHHHHHHHhh--ccCC
Confidence 98874 4889999999999999999999999987764 789999999999999 4578999999874 4444
No 13
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6e-36 Score=299.89 Aligned_cols=240 Identities=17% Similarity=0.104 Sum_probs=216.2
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Q 006054 171 AKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRN 250 (663)
Q Consensus 171 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 250 (663)
.|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 80 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVN-IITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSG 80 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSS-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcC
Confidence 48899999999999999999999988865 67889999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHc
Q 006054 251 DTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMS 330 (663)
Q Consensus 251 ~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~ 330 (663)
+.+++++|++. |.+++. +.+|.||||+|+..|+.++++.|++.+.+. +..|..|.||||+|+..|+.++++.|++.
T Consensus 81 ~~~~v~~Ll~~--g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 156 (261)
T 2xai_A 81 SWDCVNLLLQH--GASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNI-DHKISHLGTPLYLACENQQRACVKKLLES 156 (261)
T ss_dssp CHHHHHHHHHT--TCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCBTTTBCHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHC--CCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHhCCHHHHHHHHHc
Confidence 99999999998 666664 456999999999999999999999999887 67789999999999999999999999999
Q ss_pred CCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCcccccccccCc--------C
Q 006054 331 CPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIPSFVCHPKV--------D 402 (663)
Q Consensus 331 ~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~~lL~~~~a--------d 402 (663)
+.+.. .|..|+||||+|+.+++.+++++|++. |++++.+|.+|+||||+|+..+. ..++|++.+. +
T Consensus 157 g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~tpl~~A~~~~~-~~~~ll~~~~~~~l~~~~~ 230 (261)
T 2xai_A 157 GADVN--QGKGQDSPLHAVARTASEELACLLMDF---GADTQAKNAEGKRPVELVPPESP-LAQLFLEREGPPSLMQLCR 230 (261)
T ss_dssp TCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGSCTTCT-HHHHHHHC-CCCCHHHHHH
T ss_pred CCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCChhhhcccccc-HHHHHHhccCCccHHHHHH
Confidence 88764 388999999999999999999999999 99999999999999999996654 4466666554 5
Q ss_pred ccccccCCCChHHHHhhcc
Q 006054 403 RLAFNQNNCSAEDIIRSDK 421 (663)
Q Consensus 403 ~~~~n~~g~t~l~ia~~~~ 421 (663)
.+.+|..|.||+|.+....
T Consensus 231 ~~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 231 LRIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp HHHHTTSCTTCGGGGGGSS
T ss_pred HHHHHHhchhccccCcccC
Confidence 6688999999999987543
No 14
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=6.1e-36 Score=299.79 Aligned_cols=243 Identities=20% Similarity=0.161 Sum_probs=218.3
Q ss_pred CCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 006054 122 KGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYD 201 (663)
Q Consensus 122 ~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 201 (663)
+|.||||+|+..|+.+++++|++.|.+++. ++..|.||||+|+..|+.+++++|++.+.++. .
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~ 64 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNI----------------ITADHVSPLHEACLGGHLSCVKILLKHGAQVN-G 64 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSC----------------CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT-C
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC----------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC-C
Confidence 589999999999999999999999988765 77889999999999999999999999998865 6
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHH
Q 006054 202 ANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLA 281 (663)
Q Consensus 202 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A 281 (663)
.+..|.||||+|+..|+.+++++|+++|++++. +.+|.||||.|+..|+.+++++|++. |.+++..|.+|.||||+|
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A 141 (261)
T 2xai_A 65 VTADWHTPLFNACVSGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY--GGNIDHKISHLGTPLYLA 141 (261)
T ss_dssp CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCBTTTBCHHHHH
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCcCCCCCCCHHHHH
Confidence 788999999999999999999999999999875 45699999999999999999999999 789999999999999999
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHH
Q 006054 282 AHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELL 361 (663)
Q Consensus 282 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~L 361 (663)
+..|+.+++++|++.+.+.. .+..|.||||+|+..|+.++++.|++.+.+. +.+|..|+||||+|+.++ +++++|
T Consensus 142 ~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~Lh~A~~~~~~~~v~~Ll~~gad~-~~~d~~g~tpl~~A~~~~--~~~~~l 216 (261)
T 2xai_A 142 CENQQRACVKKLLESGADVN--QGKGQDSPLHAVARTASEELACLLMDFGADT-QAKNAEGKRPVELVPPES--PLAQLF 216 (261)
T ss_dssp HHTTCHHHHHHHHHHTCCTT--CCBTTBCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGSCTTC--THHHHH
T ss_pred HHhCCHHHHHHHHHcCCCCC--CCCCCCChHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCChhhhccccc--cHHHHH
Confidence 99999999999999998874 3889999999999999999999999998765 789999999999999665 488999
Q ss_pred HhCCCCC-----CCCCCCCCCCCcHHHHHHhCC
Q 006054 362 LKSPSLG-----NLVNEKNDDGNTPLLEHAGSG 389 (663)
Q Consensus 362 l~~~~~~-----~~in~~d~~G~TpLhlA~~~~ 389 (663)
+++.... ..++.+|..|+||+|.|.+..
T Consensus 217 l~~~~~~~l~~~~~~~~r~~~g~t~l~~~~~~~ 249 (261)
T 2xai_A 217 LEREGPPSLMQLCRLRIRKCFGIQQHHKITKLV 249 (261)
T ss_dssp HHC-CCCCHHHHHHHHHHTTSCTTCGGGGGGSS
T ss_pred HhccCCccHHHHHHHHHHHHhchhccccCcccC
Confidence 9873111 246678999999999999765
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-35 Score=295.15 Aligned_cols=239 Identities=23% Similarity=0.278 Sum_probs=142.6
Q ss_pred ccccccCCCcceeeecccCCCCcc------ccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHH
Q 006054 54 DQILTPNENTILHIHITARPNQTM------KSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLL 127 (663)
Q Consensus 54 ~~~~~~~g~t~Lh~A~~a~~g~~~------~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~L 127 (663)
++.+|.+|.||||+| +..|+.. ......+++++|+ +.........|..|.|||
T Consensus 3 vn~~d~~g~tpL~~A--~~~g~~~~~~~~~~~~~~~~~v~~Ll-------------------~~g~~~~~~~d~~g~t~L 61 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIA--SCSGGGLETGNSEEEEDAPAVISDFI-------------------YQGASLHNQTDRTGETAL 61 (253)
T ss_dssp ----------------------------------------------------------------------CCCTTSCCHH
T ss_pred CCCCCCCCCcHHHHH--HhccccccccchhhcCCChHHHHHHH-------------------HccCCcccccCCCCCcHH
Confidence 445667777777777 7666200 0000177777777 222222344567778888
Q ss_pred HHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCC
Q 006054 128 HIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGE 207 (663)
Q Consensus 128 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~ 207 (663)
|+|+..|+.++|++|++.|++++. ++..|.||||+|+..|+.+++++|++.++......+..|.
T Consensus 62 ~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~ 125 (253)
T 1yyh_A 62 HLAARYSRSDAAKRLLEASADANI----------------QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 125 (253)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCC
T ss_pred HHHHHcCCHHHHHHHHHcCCCCCC----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCC
Confidence 888888888888888887776654 5667778888888888888888887777644456667777
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCH
Q 006054 208 TPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYY 287 (663)
Q Consensus 208 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~ 287 (663)
||||+|+..|+.+++++|++.|++++..+..|.||||+|+..++.+++++|++. |++++.+|..|.||||+|+..|+.
T Consensus 126 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpL~~A~~~~~~ 203 (253)
T 1yyh_A 126 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSY 203 (253)
T ss_dssp CHHHHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred cHHHHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHCCCH
Confidence 777777777777777777777777777777777777777777777777777776 667777777777777777777777
Q ss_pred HHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 006054 288 NVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCP 332 (663)
Q Consensus 288 ~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~ 332 (663)
+++++|++++++. +..|..|.||+|+|+++|+.+++++|....+
T Consensus 204 ~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~~ 247 (253)
T 1yyh_A 204 ETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHDIVRLLDLEHH 247 (253)
T ss_dssp HHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHC---
T ss_pred HHHHHHHHcCCCc-cccccCCCCHHHHHHHcCCHHHHHHHHHHhh
Confidence 7777777777665 5566667777777777777777776665544
No 16
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=6.3e-37 Score=322.69 Aligned_cols=263 Identities=20% Similarity=0.198 Sum_probs=225.9
Q ss_pred hhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcC
Q 006054 116 LLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKED 195 (663)
Q Consensus 116 l~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~ 195 (663)
....|..|.||||+|+..|+.++|++|++.|++++. ++..|.||||+|+..|+.+++++|++.+
T Consensus 13 ~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~----------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~g 76 (364)
T 3ljn_A 13 RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI----------------QNRFGCTALHLACKFGCVDTAKYLASVG 76 (364)
T ss_dssp ---CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTCCCHHHHHHHHCCHHHHHHHHHHC
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccc----------------cCCCCCcHHHHHHHcCCHHHHHHHHHCC
Confidence 356788899999999999999999999999988765 7888999999999999999999999999
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHh----CCCCCC-----------------CCCCCCCHHHHHHhcC--CH
Q 006054 196 PSLPYDANNAGETPLYVAAERGYKDVTQDILLT----CKSPAD-----------------HGPMGRTALHAAAFRN--DT 252 (663)
Q Consensus 196 ~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~----~~~~~~-----------------~~~~g~t~L~~A~~~~--~~ 252 (663)
++. .+..|.||||+|+..|+.+++++|++. +.+++. .+..|.||||+|+..| +.
T Consensus 77 ~~~---~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~ 153 (364)
T 3ljn_A 77 EVH---SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYL 153 (364)
T ss_dssp CCC---CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGH
T ss_pred CCc---cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchH
Confidence 854 345799999999999999999999999 766655 7778999999999999 99
Q ss_pred HHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccc----cccCCCCCChHHHHHHhcCCHHHHHHHH
Q 006054 253 EMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSA----AYKADNEGKIPLHLAAGKGRLNTVQELI 328 (663)
Q Consensus 253 ~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~----~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll 328 (663)
+++++|++. |++++..|..|.||||+|+..|+.+++++|++++++. .+..|..|.||||+|+..|+.++++.|+
T Consensus 154 ~~v~~Ll~~--ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 231 (364)
T 3ljn_A 154 EMIKILVQL--GASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV 231 (364)
T ss_dssp HHHHHHHHH--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 999999999 8899999999999999999999999999999988872 3677889999999999999999999999
Q ss_pred HcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCC------------CCCCCCCCcHHHHHHhCCCc-cccc
Q 006054 329 MSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLV------------NEKNDDGNTPLLEHAGSGSL-IPSF 395 (663)
Q Consensus 329 ~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~i------------n~~d~~G~TpLhlA~~~~~~-~~~l 395 (663)
+.+.+. +..|..|+||||+|+.+|+.+++++|+++ ++++ ...+..|.|||+.|+..+.. .+..
T Consensus 232 ~~gad~-~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aa~~~~~~~v~~ 307 (364)
T 3ljn_A 232 EMGIDV-NMEDNEHTVPLYLSVRAAMVLLTKELLQK---TDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQ 307 (364)
T ss_dssp TTTCCT-TCCCTTSCCHHHHHHHTCCHHHHHHHHHH---SCHHHHHTCTTBSSSSBCGGGCCCCTTSCSSCCHHHHHHHH
T ss_pred HcCCCC-CCCCCCCCCHHHHHHHhChHHHHHHHHHc---CCchhhhcCcccCcccccccccccccchhhhhccCHHHHHH
Confidence 988775 78899999999999999999999999987 4332 22567788899888887733 3344
Q ss_pred ccccCcCc
Q 006054 396 VCHPKVDR 403 (663)
Q Consensus 396 L~~~~ad~ 403 (663)
|+..+++.
T Consensus 308 ll~~~~~~ 315 (364)
T 3ljn_A 308 LLQEKLDE 315 (364)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 17
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.4e-35 Score=292.99 Aligned_cols=229 Identities=26% Similarity=0.263 Sum_probs=125.0
Q ss_pred hhccCCCCCcHHHHHHHhc-------------cHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHc
Q 006054 116 LLKTNTKGETLLHIAARHG-------------HADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY 182 (663)
Q Consensus 116 l~~~~~~g~T~Lh~A~~~g-------------~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~ 182 (663)
++.+|.+|.||||+|+..| +.++++.|++.|++.+. ..+..|.||||+|+..
T Consensus 3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~---------------~~d~~g~t~L~~A~~~ 67 (253)
T 1yyh_A 3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHN---------------QTDRTGETALHLAARY 67 (253)
T ss_dssp ----------------------------------------------------------------CCCTTSCCHHHHHHHT
T ss_pred CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCccc---------------ccCCCCCcHHHHHHHc
Confidence 4667889999999999988 66666666666655432 2455666666666666
Q ss_pred CCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCC-CCCCCCCCCCCHHHHHHhcCCHHHHHHHHhc
Q 006054 183 NQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCK-SPADHGPMGRTALHAAAFRNDTEMTKVLLDS 261 (663)
Q Consensus 183 g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 261 (663)
|+.+++++|++.+++.. ..+..|.||||+|+..|+.+++++|++.+. +++..+..|.||||.|+..++.+++++|++.
T Consensus 68 g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 146 (253)
T 1yyh_A 68 SRSDAAKRLLEASADAN-IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS 146 (253)
T ss_dssp TCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHT
T ss_pred CCHHHHHHHHHcCCCCC-CCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHc
Confidence 66666666666666543 455666666666666666666666666664 5666666666666666666666666666665
Q ss_pred ccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCC
Q 006054 262 SIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDR 341 (663)
Q Consensus 262 ~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 341 (663)
|.+++.+|.+|.||||+|+..|+.+++++|++++.+. +..|..|.||||+|+..|+.++++.|++.+.+. +.+|..
T Consensus 147 --g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~ 222 (253)
T 1yyh_A 147 --HADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHM 222 (253)
T ss_dssp --TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred --CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCc-cccccC
Confidence 5666666666666666666666666666666666655 455666666666666666666666666665553 556666
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhC
Q 006054 342 GWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 342 g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
|+||||+|+++|+.+++++|...
T Consensus 223 g~tpl~~A~~~g~~~i~~~l~~~ 245 (253)
T 1yyh_A 223 DRLPRDIAQERMHHDIVRLLDLE 245 (253)
T ss_dssp CCCHHHHHHHTTCHHHHHHHHC-
T ss_pred CCCHHHHHHHcCCHHHHHHHHHH
Confidence 66666666666666666666654
No 18
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.8e-35 Score=297.15 Aligned_cols=264 Identities=19% Similarity=0.153 Sum_probs=150.3
Q ss_pred hhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcC
Q 006054 116 LLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKED 195 (663)
Q Consensus 116 l~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~ 195 (663)
++..|.+|.||||+|+..|+.++|++|++.+++.. .+..++..|.||||+|+..|+.+++++|++++
T Consensus 2 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-------------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g 68 (282)
T 1oy3_D 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE-------------YLDLQNDLGQTALHLAAILGEASTVEKLYAAG 68 (282)
T ss_dssp CCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSG-------------GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred CCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc-------------cccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 35678899999999999999999999999887632 13357788999999999999999999999998
Q ss_pred CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCC
Q 006054 196 PSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGW 275 (663)
Q Consensus 196 ~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~ 275 (663)
+++. ..+..|.||||+|+..|+.+++++|++++++......... +. .........+.
T Consensus 69 a~~~-~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~------------------~~----~~~~~~~~~~~ 125 (282)
T 1oy3_D 69 AGVL-VAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTY------------------LT----QSQDCTPDTSH 125 (282)
T ss_dssp CCSS-CCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC---------------------------------------
T ss_pred CCCC-CCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHH------------------hh----cccccCcchhc
Confidence 8865 6778899999999999999999999998876432211100 00 00011122334
Q ss_pred hHHHHHHHcCCHHHHH-HHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCccccc-CCCCcHHHHHHHcC
Q 006054 276 LPLHLAAHLGYYNVVK-ELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVD-DRGWNVFHFALQSG 353 (663)
Q Consensus 276 tpLh~A~~~g~~~iv~-~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~Av~~~ 353 (663)
++++.++..+...... .+...+.+. +..+..|.||||+|+..|+.++++.|++.+++. +..+ ..|+||||+|+.++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~~~ 203 (282)
T 1oy3_D 126 APAAVDSQPNPENEEEPRDEDWRLQL-EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL-NKPEPTCGRTPLHLAVEAQ 203 (282)
T ss_dssp ------------------CCCGGGGT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHHTT
T ss_pred chhhhccccccchhhhhhhhhhhhcC-CCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCcCHHHHHHHcC
Confidence 4444444443322222 222222222 444555666666666666666666666655544 2233 33666666666666
Q ss_pred CHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCccccccCCCChHHHHhhc
Q 006054 354 SRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAFNQNNCSAEDIIRSD 420 (663)
Q Consensus 354 ~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~n~~g~t~l~ia~~~ 420 (663)
+.+++++|+++ |++++.+|..|+||||+|+..++... ++|+++|++++.+|..|.||++++.+.
T Consensus 204 ~~~~v~~Ll~~---gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 204 AASVLELLLKA---GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp CHHHHHHHHHT---TCCTTCCCTTSCCHHHHHHTSSCHHHHHHHHHTTCCCCCCC-------------
T ss_pred CHHHHHHHHHc---CCCCcccccCCCCHHHHHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCc
Confidence 66666666665 56666666666666666666554433 566666666666666666666666543
No 19
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=3.6e-35 Score=297.31 Aligned_cols=231 Identities=18% Similarity=0.125 Sum_probs=169.4
Q ss_pred hCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHH
Q 006054 166 GMTNEAKDTALHEAARYNQIDVVKMLTKEDPSL--PYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTAL 243 (663)
Q Consensus 166 ~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~--~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L 243 (663)
+.+|..|.||||+|+..|+.+++++|++.+++. ....+..|.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL 82 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTAL 82 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHH
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence 457888999999999999999999999887662 346778899999999999999999999999999998899999999
Q ss_pred HHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHH
Q 006054 244 HAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNT 323 (663)
Q Consensus 244 ~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~ 323 (663)
|+|+..++.+++++|++.+ .......... ++.... ......+.++++.++..+....
T Consensus 83 ~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 139 (282)
T 1oy3_D 83 HLACRVRAHTCACVLLQPR--PSHPRDASDT------------------YLTQSQ---DCTPDTSHAPAAVDSQPNPENE 139 (282)
T ss_dssp HHHTTTTCHHHHHHHSSSC--CSSCCCC----------------------------------------------------
T ss_pred HHHHHcCCcchhHhhhccC--CCCchhhHHH------------------Hhhccc---ccCcchhcchhhhccccccchh
Confidence 9999999999999999873 3332221110 000011 1123456788888887776666
Q ss_pred HHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCC-CCcHHHHHHhCCCccc-ccccccCc
Q 006054 324 VQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDD-GNTPLLEHAGSGSLIP-SFVCHPKV 401 (663)
Q Consensus 324 v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~-G~TpLhlA~~~~~~~~-~lL~~~~a 401 (663)
...++......++..|..|+||||+|+.+|+.+++++|+++ |++++.++.. |+||||+|+..++... ++|+++|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga 216 (282)
T 1oy3_D 140 EEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA---GADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGA 216 (282)
T ss_dssp ----CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH---TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred hhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCC
Confidence 65555555556678899999999999999999999999998 8999999865 9999999999997755 99999999
Q ss_pred CccccccCCCChHHHHhhccc
Q 006054 402 DRLAFNQNNCSAEDIIRSDKL 422 (663)
Q Consensus 402 d~~~~n~~g~t~l~ia~~~~~ 422 (663)
+++.+|..|.||+++|.....
T Consensus 217 d~~~~d~~g~tpL~~A~~~~~ 237 (282)
T 1oy3_D 217 DPTARMYGGRTPLGSALLRPN 237 (282)
T ss_dssp CTTCCCTTSCCHHHHHHTSSC
T ss_pred CCcccccCCCCHHHHHHHcCC
Confidence 999999999999999987644
No 20
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.2e-34 Score=284.63 Aligned_cols=227 Identities=24% Similarity=0.295 Sum_probs=210.4
Q ss_pred CcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Q 006054 169 NEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAF 248 (663)
Q Consensus 169 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~ 248 (663)
+..+++|||.|+..|+.+.++.+++.++......+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||.|+.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 82 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAAS 82 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHH
Confidence 34578999999999999999999999887777789999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHH
Q 006054 249 RNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328 (663)
Q Consensus 249 ~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll 328 (663)
.++.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|++++.+. +..+..|.||||+|+..|+.++++.|+
T Consensus 83 ~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 159 (231)
T 3aji_A 83 AGXDEIVKALLVK--GAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANP-DAKDHYDATAMHRAAAKGNLKMVHILL 159 (231)
T ss_dssp HTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cCHHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHcCCHHHHHHHH
Confidence 9999999999998 7899999999999999999999999999999999887 677889999999999999999999999
Q ss_pred HcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcC
Q 006054 329 MSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVD 402 (663)
Q Consensus 329 ~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad 402 (663)
+.+.+. +..|..|+||||+|+.+++.+++++|+++ |++++.+|..|+||||+|+..++... ++|.+.|++
T Consensus 160 ~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~~~a~ 230 (231)
T 3aji_A 160 FYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQ---GASIYIENKEEKTPLQVAKGGLGLILKRLAEGEEAS 230 (231)
T ss_dssp HTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHHHHHC
T ss_pred hcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHC---CCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcccccc
Confidence 987765 77899999999999999999999999999 99999999999999999988775544 777777654
No 21
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=1.1e-35 Score=313.20 Aligned_cols=280 Identities=20% Similarity=0.182 Sum_probs=209.5
Q ss_pred cCCCccccchhhchHHHHHHHHcCChhHHHhhhhccccc--cccCCCcceeeecccCCCCccccccccchhhhhhhcccc
Q 006054 18 AGRLSVREKNFELMDSLYKAAVEGHTDQFRAHATMLDQI--LTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFK 95 (663)
Q Consensus 18 ~~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~--~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~ 95 (663)
-.+++.+..|..|+|+||.||..|+.+++++|++.+.++ .+..|.||||+| +..|+ .+++++|++.++
T Consensus 8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A--~~~g~-------~~~v~~Ll~~g~- 77 (364)
T 3ljn_A 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA--CKFGC-------VDTAKYLASVGE- 77 (364)
T ss_dssp --------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH--HHHCC-------HHHHHHHHHHCC-
T ss_pred ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHH--HHcCC-------HHHHHHHHHCCC-
Confidence 346788889999999999999999999999999996555 889999999999 99999 999999993333
Q ss_pred ccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHHHHHHHHHh----cCCCCCCCCc-chhHHHHHHhhCCCc
Q 006054 96 KQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAE----CKKPHQNDPE-KGVEAVRLMQGMTNE 170 (663)
Q Consensus 96 ~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~----~~~~~~~~~~-~~~~~~~~~l~~~~~ 170 (663)
...+.+|.||||+|+..|+.++|++|++. +.+++..... ............++.
T Consensus 78 ---------------------~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (364)
T 3ljn_A 78 ---------------------VHSLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHC 136 (364)
T ss_dssp ---------------------CCCCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEE
T ss_pred ---------------------CccccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCC
Confidence 12234799999999999999999999998 4432210000 000000001122667
Q ss_pred CCChHHHHHHHcC--CHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCC-----CCCCCCCCCCHH
Q 006054 171 AKDTALHEAARYN--QIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKS-----PADHGPMGRTAL 243 (663)
Q Consensus 171 ~g~t~L~~A~~~g--~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~-----~~~~~~~g~t~L 243 (663)
.|.||||+|+..| +.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.|++ ++..+..|.|||
T Consensus 137 ~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L 215 (364)
T 3ljn_A 137 KGQTALHWCVGLGPEYLEMIKILVQLGASPT-AKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHL 215 (364)
T ss_dssp SCCCHHHHHHHSCGGGHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTT
T ss_pred CCCCHHHHHHHcCCchHHHHHHHHHcCCCCc-ccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHH
Confidence 7889999999999 8899999999888765 5677888999999999999999999988887 888888888999
Q ss_pred HHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccc-----------cCCCCCChHH
Q 006054 244 HAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAY-----------KADNEGKIPL 312 (663)
Q Consensus 244 ~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~-----------~~~~~g~tpL 312 (663)
|+|+..|+.+++++|++. |++++.+|.+|.||||+|+..|+.+++++|++++++... ..+..+++|+
T Consensus 216 ~~A~~~g~~~~v~~Ll~~--gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 293 (364)
T 3ljn_A 216 HWAILINWEDVAMRFVEM--GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDF 293 (364)
T ss_dssp HHHHTTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHTCTTBSSSSBCGGGCCCCTT
T ss_pred HHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhcCcccCcccccccccccccc
Confidence 999998899999999887 788888888888999999998889999888887655311 1233455555
Q ss_pred HHHHhcCCHHHHHHHHHcC
Q 006054 313 HLAAGKGRLNTVQELIMSC 331 (663)
Q Consensus 313 h~Aa~~g~~~~v~~Ll~~~ 331 (663)
++|+..|+.+.+..|+..+
T Consensus 294 ~~aa~~~~~~~v~~ll~~~ 312 (364)
T 3ljn_A 294 VPAAADPSKQEVLQLLQEK 312 (364)
T ss_dssp SCSSCCHHHHHHHHHHHHH
T ss_pred hhhhhccCHHHHHHHHHHH
Confidence 5555555555555555443
No 22
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7.7e-34 Score=280.00 Aligned_cols=216 Identities=25% Similarity=0.327 Sum_probs=113.1
Q ss_pred CCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 006054 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAA 247 (663)
Q Consensus 168 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~ 247 (663)
++..|.||||+|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+
T Consensus 7 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 85 (237)
T 3b7b_A 7 EHQNKRSPLHAAAEAGHVDICHMLVQAGANID-TCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAA 85 (237)
T ss_dssp SSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHH
T ss_pred ccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcC-ccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHH
Confidence 33444444444444444444444444444332 23344444444444444555555555555444444555555555555
Q ss_pred hcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHH
Q 006054 248 FRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327 (663)
Q Consensus 248 ~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L 327 (663)
..++.+++++|++.++ .+++..+..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.++++.|
T Consensus 86 ~~~~~~~~~~Ll~~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~L 163 (237)
T 3b7b_A 86 KKGHYEVVQYLLSNGQ-MDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEIL 163 (237)
T ss_dssp HTTCHHHHHHHHTTTC-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred HcCCHHHHHHHHhCCC-CCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHHH
Confidence 5555555555555422 444555555555555555555555555555555444 34455555555555555555555555
Q ss_pred HHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCC
Q 006054 328 IMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGS 390 (663)
Q Consensus 328 l~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~ 390 (663)
++.+.+. +..|..|+||||+|+.+++.+++++|+++ |++++.+|.+|+||||+|+..++
T Consensus 164 l~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 164 LAAKCDL-HAVNIHGDSPLHIAARENRYDCVVLFLSR---DSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HTTTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHTT---TCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HHcCCCC-CCcCCCCCCHHHHHHHhCCHhHHHHHHHc---CCCCCccCCCCCCHHHHHHHHHH
Confidence 5554443 44555566666666666666666666655 55666666666666666665553
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=7.9e-34 Score=279.92 Aligned_cols=216 Identities=24% Similarity=0.237 Sum_probs=203.1
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHH
Q 006054 201 DANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHL 280 (663)
Q Consensus 201 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~ 280 (663)
..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||.|+..|+.+++++|++. |.+++..+..|.||||+
T Consensus 6 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~ 83 (237)
T 3b7b_A 6 MEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GALVDPKDAEGSTCLHL 83 (237)
T ss_dssp CSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTT--TCCCCCCCTTSCCHHHH
T ss_pred cccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhC--CCCCCCCCCCCCcHHHH
Confidence 5678899999999999999999999999999999999999999999999999999999998 78999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHH
Q 006054 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIEL 360 (663)
Q Consensus 281 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~ 360 (663)
|+..|+.+++++|++.++...+..+..|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+|+..|+.+++++
T Consensus 84 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 84 AAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDI-NIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp HHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred HHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CccCCCCCCHHHHHHHCCCHHHHHH
Confidence 999999999999999985555778899999999999999999999999988765 7789999999999999999999999
Q ss_pred HHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCccccccCCCChHHHHhhccc
Q 006054 361 LLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAFNQNNCSAEDIIRSDKL 422 (663)
Q Consensus 361 Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~n~~g~t~l~ia~~~~~ 422 (663)
|++. |++++.+|..|+||||+|+..++... ++|+++|++++.+|..|.||+++|...+.
T Consensus 163 Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~ 222 (237)
T 3b7b_A 163 LLAA---KCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222 (237)
T ss_dssp HHTT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCH
T ss_pred HHHc---CCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHH
Confidence 9998 89999999999999999999997655 99999999999999999999999987554
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=1.9e-34 Score=284.97 Aligned_cols=227 Identities=24% Similarity=0.219 Sum_probs=120.5
Q ss_pred CcCCChHHHHHHHcCCHHHHHHHHH----cCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHH
Q 006054 169 NEAKDTALHEAARYNQIDVVKMLTK----EDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALH 244 (663)
Q Consensus 169 ~~~g~t~L~~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~ 244 (663)
|.+|.||||+|+..|+.+++++|++ .+.++ ...+..|.||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus 6 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 6 DEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAH 84 (241)
T ss_dssp -CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCC-CcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence 3344444444444444444444433 22222 233444455555555555555555555555555555555555555
Q ss_pred HHHhcCCHHHHHHHHhccc--CCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHH
Q 006054 245 AAAFRNDTEMTKVLLDSSI--GTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLN 322 (663)
Q Consensus 245 ~A~~~~~~~~v~~Ll~~~~--g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~ 322 (663)
.|+..++.+++++|++..+ +.+++..|..|.||||+|+..|+.+++++|++.+.+.....+..|.||||+|+..|+.+
T Consensus 85 ~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~ 164 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS 164 (241)
T ss_dssp HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHH
Confidence 5555555555555555421 11445555566666666666666666666666655552222255666666666666666
Q ss_pred HHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccC
Q 006054 323 TVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPK 400 (663)
Q Consensus 323 ~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ 400 (663)
+++.|++.+.+. +..|..|+||||+|+.+++.+++++|+++ |++++.+|..|+||||+|+..+.... +.|.+.+
T Consensus 165 ~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~i~~~l~~~~ 239 (241)
T 1k1a_A 165 MVQLLLQHGANV-NAQMYSGSSALHSASGRGLLPLVRTLVRS---GADSSLKNCHNDTPLMVARSRRVIDILRGKATRP 239 (241)
T ss_dssp HHHHHHHTTCCT-TCBCTTSCBHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTSCCTTTTCSSHHHHHHHTC-----
T ss_pred HHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHhc---CCCCCCcCCCCCCHHHHHHhcCcHHHHhhhccCC
Confidence 666666665443 55566666666666666666666666666 66666666666666666666554332 4444433
No 25
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.5e-34 Score=284.15 Aligned_cols=215 Identities=23% Similarity=0.288 Sum_probs=197.2
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHH----hCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCCh
Q 006054 201 DANNAGETPLYVAAERGYKDVTQDILL----TCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276 (663)
Q Consensus 201 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~----~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~t 276 (663)
..|..|.||||+|+..|+.+++++|++ .+.+++..+..|.||||.|+..|+.+++++|++. |.+++..|..|.|
T Consensus 4 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t 81 (241)
T 1k1a_A 4 RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA--GASPMALDRHGQT 81 (241)
T ss_dssp ---CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCC
Confidence 568899999999999999999999997 6889999999999999999999999999999998 7899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCcc---ccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCccccc-CCCCcHHHHHHHc
Q 006054 277 PLHLAAHLGYYNVVKELLKADKS---AAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVD-DRGWNVFHFALQS 352 (663)
Q Consensus 277 pLh~A~~~g~~~iv~~Ll~~~~~---~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d-~~g~t~Lh~Av~~ 352 (663)
|||+|+..|+.+++++|++.+.. .....+..|.||||+|+..|+.++++.|++.+.+. +..+ ..|.||||+|+.+
T Consensus 82 ~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~~g~t~L~~A~~~ 160 (241)
T 1k1a_A 82 AAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADI-DAVDIKSGRSPLIHAVEN 160 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTTCCCHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCc-ccccccCCCcHHHHHHHc
Confidence 99999999999999999998872 23667889999999999999999999999998876 4455 8899999999999
Q ss_pred CCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCccccccCCCChHHHHhhcc
Q 006054 353 GSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAFNQNNCSAEDIIRSDK 421 (663)
Q Consensus 353 ~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~n~~g~t~l~ia~~~~ 421 (663)
++.+++++|+++ |++++.+|..|+||||+|+..++... ++|+++|++++.+|..|.||+++|...+
T Consensus 161 ~~~~~v~~Ll~~---g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~ 227 (241)
T 1k1a_A 161 NSLSMVQLLLQH---GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRR 227 (241)
T ss_dssp TCHHHHHHHHHT---TCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHH
T ss_pred CCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcC
Confidence 999999999999 89999999999999999999997655 9999999999999999999999997654
No 26
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=7.5e-34 Score=278.23 Aligned_cols=213 Identities=26% Similarity=0.312 Sum_probs=193.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhC--CCCCC-CCCCCCCHHHHHHh
Q 006054 172 KDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTC--KSPAD-HGPMGRTALHAAAF 248 (663)
Q Consensus 172 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~--~~~~~-~~~~g~t~L~~A~~ 248 (663)
|+||||.|+..|+.++++.|++.+++.....+..|.||||+|+..|+.+++++|++.| .+++. .+..|.||||.|+.
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~ 81 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS 81 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence 7899999999999999999999998877778999999999999999999999999999 44444 77889999999999
Q ss_pred cCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHH
Q 006054 249 RNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328 (663)
Q Consensus 249 ~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll 328 (663)
.|+.+++++|++.+.+.+++..+..|.||||+|+..|+.+++++|++++.+. +..+..|.||||+|+..|+.++++.|+
T Consensus 82 ~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll 160 (228)
T 2dzn_A 82 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASV-RIKDKFNQIPLHRAASVGSLKLIELLC 160 (228)
T ss_dssp HCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 9999999999998434888899999999999999999999999999998887 677889999999999999999999999
Q ss_pred HcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHH-hCCCCCCCCCCCCCCCCcHHHHHHhC
Q 006054 329 MSCPSSCELVDDRGWNVFHFALQSGSRRTIELLL-KSPSLGNLVNEKNDDGNTPLLEHAGS 388 (663)
Q Consensus 329 ~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll-~~~~~~~~in~~d~~G~TpLhlA~~~ 388 (663)
+.++..++..|..|+||||+|+.+++.+++++|+ +. |++++.+|.+|+||||+|+..
T Consensus 161 ~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~---ga~~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 161 GLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY---GAEYDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp TTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH---CCCSCCBCTTSCBGGGGCSST
T ss_pred hcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCcHHHHHHHH
Confidence 9986777889999999999999999999999999 66 899999999999999999754
No 27
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=2.1e-33 Score=275.70 Aligned_cols=225 Identities=25% Similarity=0.287 Sum_probs=208.8
Q ss_pred CCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 006054 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLP 199 (663)
Q Consensus 120 ~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 199 (663)
+..++||||.|+..|+.+.++.|++.+... ....+..|.||||+|+..|+.+++++|++.+.++.
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~---------------~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~ 67 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSL---------------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN 67 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGG---------------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhh---------------hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCC
Confidence 346889999999999999999999876432 33578889999999999999999999999988865
Q ss_pred CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHH
Q 006054 200 YDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLH 279 (663)
Q Consensus 200 ~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh 279 (663)
..+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||.|+..++.+++++|++. |.+++.+|..|.||||
T Consensus 68 -~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~ 144 (231)
T 3aji_A 68 -DKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG--GANPDAKDHYDATAMH 144 (231)
T ss_dssp -CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHH
T ss_pred -CcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCcHHH
Confidence 6788999999999999999999999999999999999999999999999999999999998 7899999999999999
Q ss_pred HHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHH
Q 006054 280 LAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIE 359 (663)
Q Consensus 280 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~ 359 (663)
+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..++.++++
T Consensus 145 ~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~ 222 (231)
T 3aji_A 145 RAAAKGNLKMVHILLFYKAST-NIQDTEGNTPLHLACDEERVEEAKFLVTQGASI-YIENKEEKTPLQVAKGGLGLILKR 222 (231)
T ss_dssp HHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHSCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCc-cccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHhhHHHHHHH
Confidence 999999999999999999887 677899999999999999999999999998765 788999999999999999999999
Q ss_pred HHHhC
Q 006054 360 LLLKS 364 (663)
Q Consensus 360 ~Ll~~ 364 (663)
+|.++
T Consensus 223 lL~~~ 227 (231)
T 3aji_A 223 LAEGE 227 (231)
T ss_dssp HHHHH
T ss_pred HHccc
Confidence 99976
No 28
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-34 Score=289.65 Aligned_cols=216 Identities=22% Similarity=0.243 Sum_probs=174.4
Q ss_pred CCcCCChHHHHHHHcCCHHHHHHHHHcCCCC-------CCCCCCCCCcHHHHHHHcCCH-HHHHHHHHhCCCCCCCCCCC
Q 006054 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSL-------PYDANNAGETPLYVAAERGYK-DVTQDILLTCKSPADHGPMG 239 (663)
Q Consensus 168 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~-------~~~~~~~g~tpL~~A~~~g~~-eiv~~Ll~~~~~~~~~~~~g 239 (663)
+|.++.+||+.|+..|+.++|++|++.+++. ....+..+.|||+.|+..+.. .++++|++.|++++..+.+|
T Consensus 7 kd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G 86 (269)
T 4b93_B 7 KDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDG 86 (269)
T ss_dssp CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCCCTTS
T ss_pred cCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCC
Confidence 5677889999999999999999999987653 234566789999999987765 58899999999999999999
Q ss_pred CCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcC
Q 006054 240 RTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKG 319 (663)
Q Consensus 240 ~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g 319 (663)
.||||+|+..|+.+++++|++. +++++..+.+|.||+|.|+..++.++++.|++.+.++ +..|..|.||||+|+..|
T Consensus 87 ~TpLh~A~~~g~~~~v~~Ll~~--~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~-n~~d~~g~TpL~~A~~~g 163 (269)
T 4b93_B 87 SSPLHVAALHGRADLIPLLLKH--GANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKP-NKKDLSGNTPLIYACSGG 163 (269)
T ss_dssp CCHHHHHHHTTCTTHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTCCCHHHHHHHTT
T ss_pred CCHHHHHHHcCcHHHHHHHHhc--CCCcCccCCCCCCccccccccChHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHCC
Confidence 9999999999999999999998 7899999999999999999999999999999999887 678999999999999999
Q ss_pred CHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCC
Q 006054 320 RLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGS 390 (663)
Q Consensus 320 ~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~ 390 (663)
+.++++.|++.+.+. +..|..|+||||+|+.+|+.+++++|+++ |+++|.+|.+|+||||+|+++++
T Consensus 164 ~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~---Gad~~~~d~~G~TpL~~A~~~~~ 230 (269)
T 4b93_B 164 HHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLH---GASVQVLNKRQRTAVDCAEQNSK 230 (269)
T ss_dssp CGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHT---TCCSCCCCTTSCCSGGGSCTTCH
T ss_pred CHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHC---CCCCCCcCCCCCCHHHHHHhCCc
Confidence 999999999998765 78899999999999999999999999998 99999999999999999988764
No 29
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=3e-33 Score=273.89 Aligned_cols=221 Identities=22% Similarity=0.267 Sum_probs=198.2
Q ss_pred CCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcC--CCCCC
Q 006054 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKED--PSLPY 200 (663)
Q Consensus 123 g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~--~~~~~ 200 (663)
|+||||+|+..|+.++++.|++.+.+... ..+..|.||||+|+..|+.+++++|++.+ ++...
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---------------~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~ 66 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLL---------------QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD 66 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTT---------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGG
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccc---------------cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccc
Confidence 78999999999999999999999875432 46788999999999999999999999998 55544
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHhC--CCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHH
Q 006054 201 DANNAGETPLYVAAERGYKDVTQDILLTC--KSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278 (663)
Q Consensus 201 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpL 278 (663)
..+..|.||||+|+..|+.+++++|+++| .+++..+..|.||||.|+..++.+++++|++. |.+++.+|..|.|||
T Consensus 67 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L 144 (228)
T 2dzn_A 67 YPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIEN--GASVRIKDKFNQIPL 144 (228)
T ss_dssp CCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCSCCCCTTSCCHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHc--CCCccccCCCCCCHH
Confidence 47889999999999999999999999999 88888999999999999999999999999998 889999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHH-HcCCCCcccccCCCCcHHHHHHHcCCHHH
Q 006054 279 HLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI-MSCPSSCELVDDRGWNVFHFALQSGSRRT 357 (663)
Q Consensus 279 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll-~~~~~~~~~~d~~g~t~Lh~Av~~~~~~i 357 (663)
|+|+..|+.+++++|++.+....+..|..|.||||+|+..|+.++++.|+ +.+. .++..|..|+||||+|+.. ++
T Consensus 145 ~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga-~~~~~~~~g~t~l~~A~~~---~~ 220 (228)
T 2dzn_A 145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGA-EYDLVDNKGAKAEDVALNE---QV 220 (228)
T ss_dssp HHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCC-CSCCBCTTSCBGGGGCSST---TH
T ss_pred HHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-CCCccCCCCCcHHHHHHHH---HH
Confidence 99999999999999999994444788999999999999999999999999 5555 4588999999999999765 56
Q ss_pred HHHHHhC
Q 006054 358 IELLLKS 364 (663)
Q Consensus 358 v~~Ll~~ 364 (663)
+++|+++
T Consensus 221 ~~~l~~~ 227 (228)
T 2dzn_A 221 KKFFLNN 227 (228)
T ss_dssp HHHHHTT
T ss_pred HHHHHhc
Confidence 6666653
No 30
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=7.6e-33 Score=272.89 Aligned_cols=229 Identities=21% Similarity=0.203 Sum_probs=209.6
Q ss_pred hccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCC
Q 006054 117 LKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDP 196 (663)
Q Consensus 117 ~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~ 196 (663)
...|..|.||||.|+..|+.+++++|++.|.+++. .+..|.||||.|+..|+.+++++|++.++
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 66 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ----------------PDKENVTLLHWAAINNRIDLVKYYISKGA 66 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCC----------------CCCCCCCHHHHHHHhCCHHHHHHHHHcCC
Confidence 45678899999999999999999999999988765 67789999999999999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCCh
Q 006054 197 SLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276 (663)
Q Consensus 197 ~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~t 276 (663)
+.....+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++.+++++|++. |.+++..+.+|.|
T Consensus 67 ~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~--~~~~~~~~~~g~t 144 (240)
T 3eu9_A 67 IVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAK--GQDVDMMDQNGMT 144 (240)
T ss_dssp CTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCC
T ss_pred cchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhc--CCCccccCCCCCc
Confidence 88877777899999999999999999999999999999999999999999999999999999998 7899999999999
Q ss_pred HHHHHHHcCC-HHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCH
Q 006054 277 PLHLAAHLGY-YNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSR 355 (663)
Q Consensus 277 pLh~A~~~g~-~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~ 355 (663)
|||+|+..++ .+++++|++.+.+.....+..|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+|+++++.
T Consensus 145 ~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~ 223 (240)
T 3eu9_A 145 PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANV-DAQNIKGESALDLAKQRKNV 223 (240)
T ss_dssp HHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCT-TCBCTTSCBHHHHHHHTTCH
T ss_pred HHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcH
Confidence 9999997776 889999999998874433348999999999999999999999998665 77899999999999999999
Q ss_pred HHHHHHHhC
Q 006054 356 RTIELLLKS 364 (663)
Q Consensus 356 ~iv~~Ll~~ 364 (663)
+++++|++.
T Consensus 224 ~~v~~L~~~ 232 (240)
T 3eu9_A 224 WMINHLQEA 232 (240)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999999987
No 31
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-34 Score=286.82 Aligned_cols=229 Identities=21% Similarity=0.246 Sum_probs=176.2
Q ss_pred ccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCH-HHHHHHHHcCC
Q 006054 118 KTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQI-DVVKMLTKEDP 196 (663)
Q Consensus 118 ~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~-~iv~~Ll~~~~ 196 (663)
++|..+.+||+.||..|+.++|++|++.+++..... ...+...+..+.||||.|+..++. ++++.|++.+.
T Consensus 6 kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~--------~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Ga 77 (269)
T 4b93_B 6 KKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDA--------EDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGL 77 (269)
T ss_dssp -CCCHHHHHHHHHHHTTCHHHHHHHHTCC------------------------------------------------CCC
T ss_pred ccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccc--------cccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCC
Confidence 456778899999999999999999999887643211 112345678899999999988776 47899999998
Q ss_pred CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCCh
Q 006054 197 SLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276 (663)
Q Consensus 197 ~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~t 276 (663)
+++ ..+..|.||||+|+..|+.+++++|++.+++++..+.+|.||+|.|+..++.++++.|++. |.+++.+|..|.|
T Consensus 78 dvn-~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~--g~~~n~~d~~g~T 154 (269)
T 4b93_B 78 GVN-VTSQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDS--NAKPNKKDLSGNT 154 (269)
T ss_dssp CTT-CCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCSCCCCTTCCC
T ss_pred CCC-CcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHC--CCCCCCCCCCCCC
Confidence 875 6788999999999999999999999999999999999999999999999999999999998 8899999999999
Q ss_pred HHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHH
Q 006054 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRR 356 (663)
Q Consensus 277 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~ 356 (663)
|||+|+..|+.+++++|+++++++ +..+..|.||||+|+..|+.++++.|++.+.+. +.+|..|+||||+|+++++
T Consensus 155 pL~~A~~~g~~~~v~~Ll~~gadv-n~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~-~~~d~~G~TpL~~A~~~~~-- 230 (269)
T 4b93_B 155 PLIYACSGGHHELVALLLQHGASI-NASNNKGNTALHEAVIEKHVFVVELLLLHGASV-QVLNKRQRTAVDCAEQNSK-- 230 (269)
T ss_dssp HHHHHHHTTCGGGHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCS-CCCCTTSCCSGGGSCTTCH--
T ss_pred HHHHHHHCCCHHHHHHHHHCCCCC-CccccCCCcHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHhCCc--
Confidence 999999999999999999999987 778999999999999999999999999998765 8899999999999998775
Q ss_pred HHHHH
Q 006054 357 TIELL 361 (663)
Q Consensus 357 iv~~L 361 (663)
++++|
T Consensus 231 i~~lL 235 (269)
T 4b93_B 231 IMELL 235 (269)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 44444
No 32
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=1.8e-33 Score=287.57 Aligned_cols=270 Identities=18% Similarity=0.160 Sum_probs=225.6
Q ss_pred HHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCc
Q 006054 129 IAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGET 208 (663)
Q Consensus 129 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t 208 (663)
.++..++.+.++.++.............. ....+..|.||||.|+..|+.+++++|++.++++. ..+..|.|
T Consensus 4 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t 75 (299)
T 1s70_B 4 ADAKQKRNEQLKRWIGSETDLEPPVVKRK-------KTKVKFDDGAVFLAACSSGDTEEVLRLLERGADIN-YANVDGLT 75 (299)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSCCSCCCCS-------CCCCEECHHHHHHHHHHHTCHHHHHHHHHHCCCTT-CBCTTCCB
T ss_pred hHHHHHHHHHHHHHHccccccccccccCc-------ccccccCCccHHHHHHHcCCHHHHHHHHHcCCCCc-ccCCCCCC
Confidence 46788888888888887655433221110 11234567899999999999999999999998865 57888999
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHH
Q 006054 209 PLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYN 288 (663)
Q Consensus 209 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~ 288 (663)
|||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++. |.+++..|.+|.||||+|+..++.+
T Consensus 76 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~ 153 (299)
T 1s70_B 76 ALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQ--GAHVGAVNSEGDTPLDIAEEEAMEE 153 (299)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHCCSHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999998 7899999999999999999999999
Q ss_pred HHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 006054 289 VVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLG 368 (663)
Q Consensus 289 iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~ 368 (663)
+++.++..........+..+.++++ ..+..++..+.......+..|.||||+|+.+|+.+++++|++. |
T Consensus 154 ~~~~ll~~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~---g 222 (299)
T 1s70_B 154 LLQNEVNRQGVDIEAARKEEERIML--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA---R 222 (299)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHH--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTT---T
T ss_pred HHHHHHhhcCCCchhhhhhhhhHHH--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHc---C
Confidence 9998887433221221222222322 3455667777666666788999999999999999999999998 8
Q ss_pred CCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCccccccCCCChHHHHhh
Q 006054 369 NLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAFNQNNCSAEDIIRS 419 (663)
Q Consensus 369 ~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~n~~g~t~l~ia~~ 419 (663)
+++|.+|..|+||||+|+..++... ++|+++|+|++.+|..|.||+++|..
T Consensus 223 ~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~ 274 (299)
T 1s70_B 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE 274 (299)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence 9999999999999999999997755 99999999999999999999999953
No 33
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2.1e-33 Score=287.16 Aligned_cols=240 Identities=21% Similarity=0.268 Sum_probs=209.2
Q ss_pred cCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 006054 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSL 198 (663)
Q Consensus 119 ~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 198 (663)
.+..|.||||.||..|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|++.++++
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~ 99 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINY----------------ANVDGLTALHQACIDDNVDMVKFLVENGANI 99 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC----------------BCTTCCBHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcc----------------cCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence 345688999999999999999999999988765 7788999999999999999999999999886
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHH
Q 006054 199 PYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278 (663)
Q Consensus 199 ~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpL 278 (663)
. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.++++.++... +.+++..+..+.+++
T Consensus 100 ~-~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~~ 177 (299)
T 1s70_B 100 N-QPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ-GVDIEAARKEEERIM 177 (299)
T ss_dssp T-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHH-TCCHHHHHHHHHHHH
T ss_pred C-CCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhc-CCCchhhhhhhhhHH
Confidence 5 67889999999999999999999999999999999999999999999999999999988764 244444333333333
Q ss_pred HHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHH
Q 006054 279 HLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI 358 (663)
Q Consensus 279 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv 358 (663)
+ ..+..++..+.......+..|.||||+|+..|+.++++.|++.+.+. +..|..|+||||+|+.+|+.+++
T Consensus 178 ~--------~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~-~~~d~~g~tpL~~A~~~~~~~~v 248 (299)
T 1s70_B 178 L--------RDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDV-NIKDYDGWTPLHAAAHWGKEEAC 248 (299)
T ss_dssp H--------HHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCT-TCCCTTCCCHHHHHHHTTCHHHH
T ss_pred H--------HHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHhcCCHHHH
Confidence 3 33455666666555667789999999999999999999999988665 77899999999999999999999
Q ss_pred HHHHhCCCCCCCCCCCCCCCCcHHHHHHhC
Q 006054 359 ELLLKSPSLGNLVNEKNDDGNTPLLEHAGS 388 (663)
Q Consensus 359 ~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~ 388 (663)
++|+++ |++++.+|..|+||||+|+..
T Consensus 249 ~~Ll~~---gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 249 RILVEN---LCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp HHHHHT---TCCTTCCCTTSCCTTTSCCSG
T ss_pred HHHHHc---CCCCCCcCCCCCCHHHHHHHH
Confidence 999999 999999999999999999754
No 34
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=100.00 E-value=2.6e-33 Score=290.18 Aligned_cols=268 Identities=14% Similarity=0.087 Sum_probs=195.8
Q ss_pred cchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHH
Q 006054 83 LKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVR 162 (663)
Q Consensus 83 ~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~ 162 (663)
.+++++|++.|+ .++..+..|.|+++ |+.++|+.|+++|.+++............
T Consensus 32 ~dlv~~ll~~ga--------------------~i~~~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~~~~~~a~~~~~ 86 (327)
T 1sw6_A 32 HDLTSDFLSSPL--------------------KIMKALPSPVVNDN-----EQKMKLEAFLQRLLFPEIQEMPTSLNNDS 86 (327)
T ss_dssp TTCCCSTTTSSC--------------------CCEECBCCCCCCCH-----HHHHHHHHHHHHHHC--------------
T ss_pred CchHHHHhhCCc--------------------ccccCCCCCCcccC-----chhHHHHHHHHhccCCccccchHhhhccc
Confidence 678899984333 35667788999987 99999999999998765411000000000
Q ss_pred H-HhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCC
Q 006054 163 L-MQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRT 241 (663)
Q Consensus 163 ~-~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t 241 (663)
. --..+.....+.+|.|+..+..++++.|++.+.+++...+..|.||||+|+..|+.+++++|+++|++++..+..|.|
T Consensus 87 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~T 166 (327)
T 1sw6_A 87 SNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGES 166 (327)
T ss_dssp -----------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCC
T ss_pred ccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCC
Confidence 0 000011112234588888888899999999988877547889999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC---HHHHHHHHhcccCCCCCcCCCCCChHHHHHHH----cCCHHHHHHHHhc------------------
Q 006054 242 ALHAAAFRND---TEMTKVLLDSSIGTQTSKADQQGWLPLHLAAH----LGYYNVVKELLKA------------------ 296 (663)
Q Consensus 242 ~L~~A~~~~~---~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~----~g~~~iv~~Ll~~------------------ 296 (663)
|||+|+..|+ .++++.|++... .+++.+|.+|.||||+|+. .|+.++++.|++.
T Consensus 167 pLh~A~~~g~~~~~~~~~~ll~~~~-~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~ 245 (327)
T 1sw6_A 167 CLVKAVKSVNNYDSGTFEALLDYLY-PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTN 245 (327)
T ss_dssp HHHHHHHSSHHHHTTCHHHHHHHHG-GGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC--
T ss_pred HHHHHHHhcccccHHHHHHHHHhhh-ccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhh
Confidence 9999999988 677777777743 6788899999999999999 8999999999886
Q ss_pred --CccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCC
Q 006054 297 --DKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEK 374 (663)
Q Consensus 297 --~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~ 374 (663)
+.++ +..+..|.||||.|+. +++|++.. ++.+|..|+||||+|+.+|+.+++++|+++ |++++.+
T Consensus 246 ~~g~~~-~~~~~~g~t~L~~a~~------~~~Ll~~~---~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~---Gad~~~~ 312 (327)
T 1sw6_A 246 EKESKP-NDKNGERKDSILENLD------LKWIIANM---LNAQDSNGDTCLNIAARLGNISIVDALLDY---GADPFIA 312 (327)
T ss_dssp ---------------CHHHHHCS------HHHHHHHT---TTCCCTTSCCHHHHHHHHCCHHHHHHHHHT---TCCTTCC
T ss_pred cccCCc-ccccccCCChhHHHHH------HHHHHHhC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHc---CCCCccc
Confidence 4444 5677889999999985 77888873 567889999999999999999999999988 8999999
Q ss_pred CCCCCcHHHHHHhCC
Q 006054 375 NDDGNTPLLEHAGSG 389 (663)
Q Consensus 375 d~~G~TpLhlA~~~~ 389 (663)
|.+|+||||+|++.|
T Consensus 313 d~~G~TpL~~A~~~g 327 (327)
T 1sw6_A 313 NKSGLRPVDFGAGLE 327 (327)
T ss_dssp CTTSCCGGGGTCC--
T ss_pred CCCCCCHHHHHHhcC
Confidence 999999999998653
No 35
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.4e-31 Score=261.04 Aligned_cols=213 Identities=24% Similarity=0.281 Sum_probs=179.3
Q ss_pred cchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHH
Q 006054 83 LKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVR 162 (663)
Q Consensus 83 ~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~ 162 (663)
.+++++|++. ........|..|.||||+|+..|+.+++++|++.|++++.
T Consensus 4 ~~~i~~Ll~~-------------------g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------- 53 (223)
T 2f8y_A 4 PAVISDFIYQ-------------------GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI----------- 53 (223)
T ss_dssp -CCEETTEET-------------------TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-----------
T ss_pred HHHHHHHHHc-------------------CCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCC-----------
Confidence 8889999822 2222344578899999999999999999999999888765
Q ss_pred HHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCH
Q 006054 163 LMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTA 242 (663)
Q Consensus 163 ~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~ 242 (663)
++..|.||||+|+..|+.+++++|++.++......+..|.||||+|+..|+.+++++|++.|++++..+..|.||
T Consensus 54 -----~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~ 128 (223)
T 2f8y_A 54 -----QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSA 128 (223)
T ss_dssp -----CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBH
T ss_pred -----cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCCcCcCCCCCcH
Confidence 677899999999999999999999999885566778889999999999999999999999999988888889999
Q ss_pred HHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHH
Q 006054 243 LHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLN 322 (663)
Q Consensus 243 L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~ 322 (663)
||.|+..++.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|++++++. +..|..|.||+|+|+..|+.+
T Consensus 129 L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~ 205 (223)
T 2f8y_A 129 LHWAAAVNNVDAAVVLLKN--GANKDMQNNREETPLFLAAREGSYETAKVLLDHFANR-DITDHMDRLPRDIAQERMHHD 205 (223)
T ss_dssp HHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCC-ccccccCCCHHHHHHHhcchH
Confidence 9999999999999999988 7888888888888888888888888888888888776 566777888888888888888
Q ss_pred HHHHHHHcCCC
Q 006054 323 TVQELIMSCPS 333 (663)
Q Consensus 323 ~v~~Ll~~~~~ 333 (663)
++++|++.+..
T Consensus 206 i~~~L~~~g~~ 216 (223)
T 2f8y_A 206 IVRLLDEYNLV 216 (223)
T ss_dssp HHHHHHHTTCS
T ss_pred HHHHHHHcCCC
Confidence 88888877654
No 36
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=2.7e-32 Score=266.19 Aligned_cols=217 Identities=21% Similarity=0.237 Sum_probs=194.7
Q ss_pred cCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhc
Q 006054 182 YNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDS 261 (663)
Q Consensus 182 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 261 (663)
.|+.+++++|++.++++....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++.
T Consensus 1 gg~~~~i~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ 80 (223)
T 2f8y_A 1 GDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN 80 (223)
T ss_dssp ----CCEETTEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHB
T ss_pred CCcHHHHHHHHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 36778889999999998877789999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCC
Q 006054 262 SIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDR 341 (663)
Q Consensus 262 ~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~ 341 (663)
++ .+++..+..|.||||+|+..|+.+++++|++.+.+. +..+..|.||||+|+..|+.+++++|++.+.+. +..|..
T Consensus 81 ~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~ 157 (223)
T 2f8y_A 81 RA-TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADV-NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANK-DMQNNR 157 (223)
T ss_dssp TT-SCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTT
T ss_pred CC-CCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCCC-cCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCC
Confidence 53 588889999999999999999999999999998887 677889999999999999999999999997664 778999
Q ss_pred CCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCcc
Q 006054 342 GWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRL 404 (663)
Q Consensus 342 g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~ 404 (663)
|+||||+|+.+++.+++++|+++ |++++.+|..|.||||+|+..++... ++|++.|+...
T Consensus 158 g~t~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~~~~ 218 (223)
T 2f8y_A 158 EETPLFLAAREGSYETAKVLLDH---FANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRS 218 (223)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHT---TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCSSC
T ss_pred CcCHHHHHHHcCCHHHHHHHHHc---CCCCccccccCCCHHHHHHHhcchHHHHHHHHcCCCcc
Confidence 99999999999999999999999 89999999999999999999997655 89988887643
No 37
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=100.00 E-value=5.5e-32 Score=266.72 Aligned_cols=231 Identities=21% Similarity=0.235 Sum_probs=205.4
Q ss_pred CCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC-CCCCCHHHHH
Q 006054 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHG-PMGRTALHAA 246 (663)
Q Consensus 168 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~-~~g~t~L~~A 246 (663)
.|..|.|||+.|+..|+.+++++|++.+.++. ..+..|.||||+|+..|+.+++++|++.+.+++... ..|.||||.|
T Consensus 5 ~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A 83 (240)
T 3eu9_A 5 IDDYSTWDIVKATQYGIYERCRELVEAGYDVR-QPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWA 83 (240)
T ss_dssp CSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHH
T ss_pred cccccchHHHHHHHcCChHHHHHHHHcCCCcC-CCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHH
Confidence 57788999999999999999999999998865 678889999999999999999999999999887655 4499999999
Q ss_pred HhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCC-HHHHH
Q 006054 247 AFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGR-LNTVQ 325 (663)
Q Consensus 247 ~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~-~~~v~ 325 (663)
+..++.+++++|++. |.+++..+..|.||||+|+..|+.+++++|++++.+. ...+..|.||||+|+..++ .++++
T Consensus 84 ~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~ 160 (240)
T 3eu9_A 84 TRQGHLSMVVQLMKY--GADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDV-DMMDQNGMTPLMWAAYRTHSVDPTR 160 (240)
T ss_dssp HHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHCCSSTTHH
T ss_pred HHcCCHHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCc-cccCCCCCcHHHHHHHhCChHHHHH
Confidence 999999999999998 7899999999999999999999999999999998887 6778999999999997766 78888
Q ss_pred HHHHcCCCCcccccC-CCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCc
Q 006054 326 ELIMSCPSSCELVDD-RGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDR 403 (663)
Q Consensus 326 ~Ll~~~~~~~~~~d~-~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~ 403 (663)
.|++.+.+. +..+. .|+||||+|+.+++.+++++|+++ |++++.+|..|.||||+|+..++... ++|++.+++.
T Consensus 161 ~L~~~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~---g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~~ 236 (240)
T 3eu9_A 161 LLLTFNVSV-NLGDKYHKNTALHWAVLAGNTTVISLLLEA---GANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAK 236 (240)
T ss_dssp HHHHTTCCT-TCCCTTTCCCHHHHHHHHTCHHHHHHHHHH---TCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC---
T ss_pred HHHhcCCCc-chhhccCCCcHHHHHHHcCCHHHHHHHHHc---CCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhcc
Confidence 888888776 44555 899999999999999999999998 89999999999999999999997755 8898888766
Q ss_pred ccc
Q 006054 404 LAF 406 (663)
Q Consensus 404 ~~~ 406 (663)
...
T Consensus 237 ~~~ 239 (240)
T 3eu9_A 237 GYD 239 (240)
T ss_dssp ---
T ss_pred CcC
Confidence 543
No 38
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=100.00 E-value=6.5e-33 Score=281.40 Aligned_cols=241 Identities=15% Similarity=0.054 Sum_probs=163.8
Q ss_pred CCCCCCCCCCchhhhccCCCccccchhhchHHHHHHHHcCChhHHHhhhhccccccccCCCcceeeecccCCCCcccccc
Q 006054 2 SSSLSGSDNQNAETRRAGRLSVREKNFELMDSLYKAAVEGHTDQFRAHATMLDQILTPNENTILHIHITARPNQTMKSNN 81 (663)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~Aa~~g~~~~v~~Ll~~~~~~~~~~g~t~Lh~A~~a~~g~~~~~~~ 81 (663)
|++.+.+.+.+.+++..+ +++.+|..|.||||.|+..|+.+++++|++.+.++...+|.||||+| +..|+
T Consensus 5 s~i~~~~~~~v~~lL~~~--~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A--~~~g~------ 74 (285)
T 3kea_A 5 SRINTWKSKQLKSFLSSK--DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLENEFPLHQA--ATLED------ 74 (285)
T ss_dssp TTGGGCCHHHHHHHHHST--TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCTTCCHHHHH--TTSSS------
T ss_pred HHHHhcCHHHHHHHHHhC--CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCHHHHH--HHcCC------
Confidence 344444555566666554 46667777777777777777777777777776666444677777777 77777
Q ss_pred ccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHH
Q 006054 82 KLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAV 161 (663)
Q Consensus 82 ~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~ 161 (663)
.+++++|++.|++ ++..|..|.||||+|+..|+.+++++|+++|++++.
T Consensus 75 -~~~v~~Ll~~ga~--------------------~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~---------- 123 (285)
T 3kea_A 75 -TKIVKILLFSGLD--------------------DSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF---------- 123 (285)
T ss_dssp -CHHHHHHHHTTCC--------------------TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG----------
T ss_pred -HHHHHHHHHCCCC--------------------CCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCc----------
Confidence 7777777722221 345566777777777777777777777777766543
Q ss_pred HHHhhCCCcCC-ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCC
Q 006054 162 RLMQGMTNEAK-DTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGR 240 (663)
Q Consensus 162 ~~~l~~~~~~g-~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~ 240 (663)
++..| .||||+|+..|+.+++++|++.+++... ...|.||||+|+..|+.+++++|+++|++++..+..|.
T Consensus 124 ------~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~ 195 (285)
T 3kea_A 124 ------YGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD--LAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLF 195 (285)
T ss_dssp ------CSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCC--CSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBC
T ss_pred ------cCCCCCCCHHHHHHHcCCHHHHHHHHhCCCcccc--ccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCC
Confidence 55556 6777777777777777777777665421 12667777777777777777777777777777777777
Q ss_pred CH-HHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccc
Q 006054 241 TA-LHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSA 300 (663)
Q Consensus 241 t~-L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~ 300 (663)
|| ||+|+..++.+++++|+++ |++++..|. .|+..|+.+++++|+++|.+.
T Consensus 196 t~~L~~A~~~~~~~~v~~Ll~~--gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 196 IPDIKLAIDNKDIEMLQALFKY--DINIYSANL-------ENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp CTTHHHHHHHTCHHHHHHHTTS--CBCSTTTTG-------GGGTTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHc--CCCCCCCCh-------hhhhcCCHHHHHHHHHcCCCC
Confidence 76 7777777777777777776 666666652 445567777777777766654
No 39
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.98 E-value=2.8e-32 Score=276.73 Aligned_cols=232 Identities=16% Similarity=0.089 Sum_probs=204.3
Q ss_pred CCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHH
Q 006054 167 MTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAA 246 (663)
Q Consensus 167 ~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A 246 (663)
.+|..|.||||+|+..|+.+++++|++.++++... +|.||||+|+..|+.+++++|+++|++++..+..|.||||+|
T Consensus 26 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~---~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A 102 (285)
T 3kea_A 26 KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYA 102 (285)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCC---TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCC---CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHH
Confidence 37889999999999999999999999998886533 589999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHhcccCCCCCcCCCCC-ChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHH
Q 006054 247 AFRNDTEMTKVLLDSSIGTQTSKADQQG-WLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQ 325 (663)
Q Consensus 247 ~~~~~~~~v~~Ll~~~~g~~~~~~d~~g-~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~ 325 (663)
+..|+.+++++|++. |++++.++..| .||||+|+..|+.+++++|++++++.. ....|.||||+|+..|+.++++
T Consensus 103 ~~~g~~~~v~~Ll~~--ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~g~~~~v~ 178 (285)
T 3kea_A 103 VDSGNMQTVKLFVKK--NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMI 178 (285)
T ss_dssp HHTTCHHHHHHHHHH--CGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--CCSTHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHhc--CCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--cccCCccHHHHHHHcChHHHHH
Confidence 999999999999999 88999999999 799999999999999999999987762 1238999999999999999999
Q ss_pred HHHHcCCCCcccccCCCCcH-HHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCc
Q 006054 326 ELIMSCPSSCELVDDRGWNV-FHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDR 403 (663)
Q Consensus 326 ~Ll~~~~~~~~~~d~~g~t~-Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~ 403 (663)
.|++.+.+. +..|..|+|| ||+|+.+++.+++++|+++ |++++.+| +.|+..++... ++|+++|+++
T Consensus 179 ~Ll~~gad~-n~~~~~g~t~~L~~A~~~~~~~~v~~Ll~~---gad~~~~~-------~~a~~~~~~~iv~~Ll~~g~~~ 247 (285)
T 3kea_A 179 LLLDYMTST-NTNNSLLFIPDIKLAIDNKDIEMLQALFKY---DINIYSAN-------LENVLLDDAEIAKMIIEKHVEY 247 (285)
T ss_dssp HHHHHHHHT-CTTCCCBCCTTHHHHHHHTCHHHHHHHTTS---CBCSTTTT-------GGGGTTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCCC-CcccCCCCChHHHHHHHcCCHHHHHHHHHc---CCCCCCCC-------hhhhhcCCHHHHHHHHHcCCCC
Confidence 999997664 7789999998 9999999999999999999 99999988 35566676544 9999999987
Q ss_pred cccccCCCChHHHHh
Q 006054 404 LAFNQNNCSAEDIIR 418 (663)
Q Consensus 404 ~~~n~~g~t~l~ia~ 418 (663)
+..+.. ..++++.
T Consensus 248 ~~~~~~--~~~~~~~ 260 (285)
T 3kea_A 248 KSDSYT--KDLDIVK 260 (285)
T ss_dssp TTCTTT--TTCHHHH
T ss_pred CCcccc--chHHHHh
Confidence 655432 3344443
No 40
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.97 E-value=4e-33 Score=288.71 Aligned_cols=261 Identities=14% Similarity=0.052 Sum_probs=206.3
Q ss_pred CCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 006054 121 TKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPY 200 (663)
Q Consensus 121 ~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 200 (663)
....+|+| ..+.++|++|+++|++++. .+..|.|+++ |+.++++.|++++.+...
T Consensus 21 ~~~~~~~~----~~~~dlv~~ll~~ga~i~~----------------~~~~g~~~~~-----g~~~~v~~Ll~~g~~~~~ 75 (327)
T 1sw6_A 21 DRTAGPII----TFTHDLTSDFLSSPLKIMK----------------ALPSPVVNDN-----EQKMKLEAFLQRLLFPEI 75 (327)
T ss_dssp ----CCEE----ECCTTCCCSTTTSSCCCEE----------------CBCCCCCCCH-----HHHHHHHHHHHHHHC---
T ss_pred cccccchh----hhcCchHHHHhhCCccccc----------------CCCCCCcccC-----chhHHHHHHHHhccCCcc
Confidence 44555665 4567889999999998765 6778999987 899999999998754321
Q ss_pred C----------------CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhcCCHHHHHHHHhccc
Q 006054 201 D----------------ANNAGETPLYVAAERGYKDVTQDILLTCKSPAD-HGPMGRTALHAAAFRNDTEMTKVLLDSSI 263 (663)
Q Consensus 201 ~----------------~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~ 263 (663)
. ......+.+|.|+..+..++++.|++.|.+++. .+..|.||||+|+..|+.+++++|+++
T Consensus 76 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~-- 153 (327)
T 1sw6_A 76 QEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-- 153 (327)
T ss_dssp ----------------------------CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHT--
T ss_pred ccchHhhhcccccccccccCCccchhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc--
Confidence 0 111122335788888889999999999999999 899999999999999999999999999
Q ss_pred CCCCCcCCCCCChHHHHHHHcCC---HHHHHHHHhcCccccccCCCCCChHHHHHHh----cCCHHHHHHHHHcC-----
Q 006054 264 GTQTSKADQQGWLPLHLAAHLGY---YNVVKELLKADKSAAYKADNEGKIPLHLAAG----KGRLNTVQELIMSC----- 331 (663)
Q Consensus 264 g~~~~~~d~~g~tpLh~A~~~g~---~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~----~g~~~~v~~Ll~~~----- 331 (663)
|++++.+|.+|.||||+|+..|+ .++++.|++.+....+..|..|.||||+|+. .|+.++++.|++.+
T Consensus 154 Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~ 233 (327)
T 1sw6_A 154 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIV 233 (327)
T ss_dssp TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHh
Confidence 89999999999999999999998 6778888887644457889999999999999 89999999999873
Q ss_pred --------------CCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccc
Q 006054 332 --------------PSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFV 396 (663)
Q Consensus 332 --------------~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL 396 (663)
+..++..|..|.||||.|+. +++|++. ++|.+|.+|+||||+|+..++... ++|
T Consensus 234 ~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~-----~~n~~d~~G~TpLh~A~~~g~~~~v~~L 302 (327)
T 1sw6_A 234 KKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN-----MLNAQDSNGDTCLNIAARLGNISIVDAL 302 (327)
T ss_dssp HGGGCCEEEC----------------CHHHHHCS------HHHHHHH-----TTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred cccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh-----CCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence 34457789999999999995 8889875 589999999999999999997755 999
Q ss_pred cccCcCccccccCCCChHHHHhh
Q 006054 397 CHPKVDRLAFNQNNCSAEDIIRS 419 (663)
Q Consensus 397 ~~~~ad~~~~n~~g~t~l~ia~~ 419 (663)
+++|+|++.+|..|.||||+|..
T Consensus 303 l~~Gad~~~~d~~G~TpL~~A~~ 325 (327)
T 1sw6_A 303 LDYGADPFIANKSGLRPVDFGAG 325 (327)
T ss_dssp HHTTCCTTCCCTTSCCGGGGTCC
T ss_pred HHcCCCCcccCCCCCCHHHHHHh
Confidence 99999999999999999999864
No 41
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=2.5e-31 Score=261.87 Aligned_cols=211 Identities=24% Similarity=0.274 Sum_probs=148.7
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChH
Q 006054 202 ANNAGETPLYVAAERGYKDVTQDILLTCK----SPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLP 277 (663)
Q Consensus 202 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tp 277 (663)
.|..|.||||+|+..|+.+++++|++.+. +++..+..|.||||+|+..|+.+++++|++. |++++.+|..|.||
T Consensus 4 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~ 81 (236)
T 1ikn_D 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA--GCDPELRDFRGNTP 81 (236)
T ss_dssp ---CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSC--CCCSCCCCTTCCCH
T ss_pred CCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCH
Confidence 34455666666666666655555555443 4566666677777777777777777777766 56666667777777
Q ss_pred HHHHHHcCCHHHHHHHHhcCcc-----ccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccC-CCCcHHHHHHH
Q 006054 278 LHLAAHLGYYNVVKELLKADKS-----AAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDD-RGWNVFHFALQ 351 (663)
Q Consensus 278 Lh~A~~~g~~~iv~~Ll~~~~~-----~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~-~g~t~Lh~Av~ 351 (663)
||+|+..|+.+++++|++.+.+ .....+..|.||||+|+..|+.++++.|++.+.+. +..+. .|+||||+|+.
T Consensus 82 L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~~g~tpL~~A~~ 160 (236)
T 1ikn_D 82 LHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVD 160 (236)
T ss_dssp HHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCCCCCCCCCHHHHHHH
Confidence 7777777777777777776543 23456677888888888888888888888877665 45565 78888888888
Q ss_pred cCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCcc--ccccCCCChHHHHh
Q 006054 352 SGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRL--AFNQNNCSAEDIIR 418 (663)
Q Consensus 352 ~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~--~~n~~g~t~l~ia~ 418 (663)
.++.+++++|+++ |++++.+|..|.||||+|+..++... ++|+++|++.. ..+..|.||.+...
T Consensus 161 ~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 161 LQNPDLVSLLLKC---GADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp TTCHHHHHHHHTT---TCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred cCCHHHHHHHHHc---CCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHhhhc
Confidence 8888888888887 78888888888888888888876654 88888888766 77888888876654
No 42
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=5.4e-30 Score=251.58 Aligned_cols=204 Identities=20% Similarity=0.224 Sum_probs=150.9
Q ss_pred CCCcHHHHHHHhccHHHHHHHHHh-cCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCC-
Q 006054 122 KGETLLHIAARHGHADVVKDLIAE-CKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLP- 199 (663)
Q Consensus 122 ~g~T~Lh~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~- 199 (663)
.|.||||+|++.|+.++++.|++. +.+++. +|..|.||||+|+..|+.+++++|++.+++..
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~----------------~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~ 65 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQ----------------RGAMGETALHIAALYDNLEAAMVLMEAAPELVF 65 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGG
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCccc----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhcc
Confidence 488999999999999999999987 776654 67889999999999999999999999887643
Q ss_pred ---CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCCh
Q 006054 200 ---YDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276 (663)
Q Consensus 200 ---~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~t 276 (663)
...+..|.||||+|+..|+.+++++|+++|++++..+.... + ....+..|.+|.|
T Consensus 66 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~--~--------------------~~~~~~~~~~g~t 123 (232)
T 2rfa_A 66 EPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSV--F--------------------HYRPHNLIYYGEH 123 (232)
T ss_dssp CCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGG--G--------------------SCCTTCSCCCCSS
T ss_pred ccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCcc--e--------------------eecccccccCCCC
Confidence 34566889999999999999999999999988877654210 0 1223344556667
Q ss_pred HHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHH----HHHHHcCCCCc-----ccccCCCCcHHH
Q 006054 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTV----QELIMSCPSSC-----ELVDDRGWNVFH 347 (663)
Q Consensus 277 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v----~~Ll~~~~~~~-----~~~d~~g~t~Lh 347 (663)
|||+|+..|+.+++++|++++.++ +..|..|.||||+|+..|+.+++ +.|++.+++.. +..|..|+||||
T Consensus 124 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~ 202 (232)
T 2rfa_A 124 PLSFAACVGSEEIVRLLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFK 202 (232)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHH
Confidence 777777777777777777666655 55566677777777777766666 66666665442 456777777777
Q ss_pred HHHHcCCHHHHHHHHhC
Q 006054 348 FALQSGSRRTIELLLKS 364 (663)
Q Consensus 348 ~Av~~~~~~iv~~Ll~~ 364 (663)
+|+.+|+.+++++|+++
T Consensus 203 ~A~~~g~~~~v~~Ll~~ 219 (232)
T 2rfa_A 203 LAGVEGNIVMFQHLMQK 219 (232)
T ss_dssp HHHHHTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhc
Confidence 77777777777777776
No 43
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=1.5e-29 Score=248.38 Aligned_cols=209 Identities=22% Similarity=0.216 Sum_probs=139.7
Q ss_pred CChHHHHHHHcCCHHHHHHHHHc-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC-----CCCCCCCCCHHHH
Q 006054 172 KDTALHEAARYNQIDVVKMLTKE-DPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSP-----ADHGPMGRTALHA 245 (663)
Q Consensus 172 g~t~L~~A~~~g~~~iv~~Ll~~-~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~-----~~~~~~g~t~L~~ 245 (663)
|+||||.|+..|+.++++.|++. +.++ ...+..|.||||+|+..|+.+++++|++.|+++ +..+..|.||||.
T Consensus 3 g~t~L~~A~~~g~~~~v~~Ll~~~g~~~-~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~ 81 (232)
T 2rfa_A 3 WESPLLLAAKENDVQALSKLLKFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHI 81 (232)
T ss_dssp TTCHHHHHHHTTCHHHHHHHHTTTCSCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHH
T ss_pred CCCHHHHHHHcCCHHHHHHHHHhcCCCc-ccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHH
Confidence 55666666666666666666655 3332 244555556666666666666666665555443 3344455555555
Q ss_pred HHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHH
Q 006054 246 AAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQ 325 (663)
Q Consensus 246 A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~ 325 (663)
|+..|+.+++++|++. |.+++..+.... ++ ......+..|.||||+|+..|+.++++
T Consensus 82 A~~~~~~~~v~~Ll~~--g~~~~~~~~~~~--~~-------------------~~~~~~~~~g~t~L~~A~~~~~~~~v~ 138 (232)
T 2rfa_A 82 AVINQNVNLVRALLAR--GASVSARATGSV--FH-------------------YRPHNLIYYGEHPLSFAACVGSEEIVR 138 (232)
T ss_dssp HHHTTCHHHHHHHHHT--TCCTTCCCCSGG--GS-------------------CCTTCSCCCCSSHHHHHHHHTCHHHHH
T ss_pred HHHcCCHHHHHHHHhC--CCCCCcccCCcc--ee-------------------ecccccccCCCCHHHHHHHcCCHHHHH
Confidence 5555555555555554 344443332210 00 001223558999999999999999999
Q ss_pred HHHHcCCCCcccccCCCCcHHHHHHHcCCHHHH----HHHHhCCCCCCCC------CCCCCCCCcHHHHHHhCCCccc-c
Q 006054 326 ELIMSCPSSCELVDDRGWNVFHFALQSGSRRTI----ELLLKSPSLGNLV------NEKNDDGNTPLLEHAGSGSLIP-S 394 (663)
Q Consensus 326 ~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv----~~Ll~~~~~~~~i------n~~d~~G~TpLhlA~~~~~~~~-~ 394 (663)
.|++.+.+. +.+|..|+||||+|+.+++.+++ ++|++. |++. +.+|..|+||||+|+..++... +
T Consensus 139 ~Ll~~ga~~-~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~---g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~ 214 (232)
T 2rfa_A 139 LLIEHGADI-RAQDSLGNTVLHILILQPNKTFACQMYNLLLSY---DGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQ 214 (232)
T ss_dssp HHHHTTCCT-TCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHT---TCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHH
T ss_pred HHHHCCCCC-CCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhc---CCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHH
Confidence 999997765 77899999999999999999988 999998 6666 6899999999999999997755 9
Q ss_pred cccccCcCcccccc
Q 006054 395 FVCHPKVDRLAFNQ 408 (663)
Q Consensus 395 lL~~~~ad~~~~n~ 408 (663)
+|+++|.+......
T Consensus 215 ~Ll~~g~~~~~~~~ 228 (232)
T 2rfa_A 215 HLMQKRKHIAAAHH 228 (232)
T ss_dssp HHHHHHHHC-----
T ss_pred HHHhcCccchhhhc
Confidence 99999887655443
No 44
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=2.4e-30 Score=254.93 Aligned_cols=217 Identities=20% Similarity=0.235 Sum_probs=179.3
Q ss_pred cccCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccH
Q 006054 57 LTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHA 136 (663)
Q Consensus 57 ~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~ 136 (663)
+|.+|.||||+| +..|+ .+++++|++.+.. .+..++..+..|.||||+|+..|+.
T Consensus 4 ~d~~g~t~L~~A--~~~g~-------~~~v~~Ll~~~~~----------------~~~~~~~~~~~g~t~L~~A~~~~~~ 58 (236)
T 1ikn_D 4 LTEDGDSFLHLA--IIHEE-------KALTMEVIRQVKG----------------DLAFLNFQNNLQQTPLHLAVITNQP 58 (236)
T ss_dssp ---CCCCTTHHH--HHTTC-------SSSSSCCCC---------------------CCCCCCCCTTCCCHHHHHHHTTCH
T ss_pred CCCCCCchhHHH--HHcCC-------hhHHHHHHHHhhc----------------cHHHhhccCCCCCCHHHHHHHcCCH
Confidence 678899999999 99999 9999999822111 1224567788999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCC-----CCCCCCCCCcHHH
Q 006054 137 DVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSL-----PYDANNAGETPLY 211 (663)
Q Consensus 137 ~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~-----~~~~~~~g~tpL~ 211 (663)
+++++|++.|++++. ++..|.||||+|+..|+.+++++|++.+++. ....+..|.||||
T Consensus 59 ~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~ 122 (236)
T 1ikn_D 59 EIAEALLGAGCDPEL----------------RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122 (236)
T ss_dssp HHHHCCCSCCCCSCC----------------CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHH
T ss_pred HHHHHHHHcCCCCCC----------------cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHH
Confidence 999999999988765 6778999999999999999999999987642 3456778999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCCCC-CCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHH
Q 006054 212 VAAERGYKDVTQDILLTCKSPADHGP-MGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVV 290 (663)
Q Consensus 212 ~A~~~g~~eiv~~Ll~~~~~~~~~~~-~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv 290 (663)
+|+..|+.+++++|+++|++++..+. .|.||||+|+..++.+++++|++. |++++.+|..|.||||+|+..|+.+++
T Consensus 123 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~tpl~~A~~~~~~~~~ 200 (236)
T 1ikn_D 123 LASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC--GADVNRVTYQGYSPYQLTWGRPSTRIQ 200 (236)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTT--TCCSCCCCTTCCCGGGGCTTSSCHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccCCCCCHHHHHHccCchHHH
Confidence 99999999999999999999998887 899999999999999999999988 788899999999999999999999999
Q ss_pred HHHHhcCcccc-ccCCCCCChHHHHHH
Q 006054 291 KELLKADKSAA-YKADNEGKIPLHLAA 316 (663)
Q Consensus 291 ~~Ll~~~~~~~-~~~~~~g~tpLh~Aa 316 (663)
++|++++++.. ...+..|.+|.+.+.
T Consensus 201 ~~Ll~~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 201 QQLGQLTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp HHHHTTSCGGGSSCCCCCTTTCCCCC-
T ss_pred HHHHHcchhhhhcCCccchHHHHhhhc
Confidence 99999888653 345666777655443
No 45
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=3.1e-29 Score=240.26 Aligned_cols=193 Identities=20% Similarity=0.211 Sum_probs=153.3
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Q 006054 170 EAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFR 249 (663)
Q Consensus 170 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 249 (663)
..+.||||.|+..|+.+.++.|+..++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~ 82 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ 82 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 45778888888888888888888877744456777888888888888888888888888888888888888888888888
Q ss_pred CCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCC-----HHHH
Q 006054 250 NDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGR-----LNTV 324 (663)
Q Consensus 250 ~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~-----~~~v 324 (663)
++.+++++|++.. +.+++..|..|.||||+|+..|+.+++++|++++....+..|..|.||||+|+..++ .+++
T Consensus 83 ~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v 161 (201)
T 3hra_A 83 GRTEILAYMLKHA-TPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIV 161 (201)
T ss_dssp TCHHHHHHHHHHS-CCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred CCHHHHHHHHhcc-CcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence 8888888888553 367778888888888888888888888888888744446677788888888888777 7888
Q ss_pred HHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 325 QELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 325 ~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
+.|++.+.+. +..|..|+||||+|+.+++.+++++|+++
T Consensus 162 ~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 200 (201)
T 3hra_A 162 KLLMENGADQ-SIKDNSGRTAMDYANQKGYTEISKILAQY 200 (201)
T ss_dssp HHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred HHHHHCCCCC-CccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence 8888877654 66778888888888888888888888765
No 46
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.96 E-value=1.3e-28 Score=235.87 Aligned_cols=192 Identities=21% Similarity=0.249 Sum_probs=179.2
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCC-CCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHH
Q 006054 204 NAGETPLYVAAERGYKDVTQDILLTCK-SPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAA 282 (663)
Q Consensus 204 ~~g~tpL~~A~~~g~~eiv~~Ll~~~~-~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~ 282 (663)
..+.||||.|+..|+.+.++.|+..+. +++..+.+|.||||.|+..|+.+++++|++. |.+++..|..|.||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A~ 80 (201)
T 3hra_A 3 TYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDR--GADINLQNSISDSPYLYAG 80 (201)
T ss_dssp CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred cccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH
Confidence 468899999999999999999999886 8999999999999999999999999999999 8899999999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCC-----HHH
Q 006054 283 HLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGS-----RRT 357 (663)
Q Consensus 283 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~-----~~i 357 (663)
..|+.+++++|++.+....+..+..|.||||+|+..|+.++++.|++.++..++..|..|+||||+|+..++ .++
T Consensus 81 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~ 160 (201)
T 3hra_A 81 AQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDI 160 (201)
T ss_dssp HTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHH
T ss_pred HcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHH
Confidence 999999999999766655578899999999999999999999999999977778999999999999999998 999
Q ss_pred HHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccC
Q 006054 358 IELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPK 400 (663)
Q Consensus 358 v~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ 400 (663)
+++|+++ |++++.+|..|+||||+|+..++... ++|++.|
T Consensus 161 v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 161 VKLLMEN---GADQSIKDNSGRTAMDYANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHHHT---TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTCC
T ss_pred HHHHHHC---CCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhcC
Confidence 9999999 99999999999999999999997655 8888765
No 47
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=3.5e-29 Score=252.35 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=139.8
Q ss_pred hccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHc---CCHHHHHHHHH
Q 006054 117 LKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY---NQIDVVKMLTK 193 (663)
Q Consensus 117 ~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~ 193 (663)
...|..|.||||.|++.|+.++|+.|++.+.+....-.. ....++..|.||||+|+.. |+.+++++|++
T Consensus 7 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~--------~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~ 78 (273)
T 2pnn_A 7 KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTD--------SEFKDPETGKTCLLKAMLNLHNGQNDTIALLLD 78 (273)
T ss_dssp ----CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTS--------GGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHH
T ss_pred CCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCC--------cccccCcCCCCHHHHHHHHHhcCChHHHHHHHH
Confidence 457889999999999999999999999865432210000 0113578899999999987 99999999999
Q ss_pred cCCCCC----------CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCC--------------CCCCHHHHHHhc
Q 006054 194 EDPSLP----------YDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGP--------------MGRTALHAAAFR 249 (663)
Q Consensus 194 ~~~~~~----------~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~--------------~g~t~L~~A~~~ 249 (663)
.+++.. ...+..|.||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..
T Consensus 79 ~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~ 158 (273)
T 2pnn_A 79 VARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACT 158 (273)
T ss_dssp HHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred hhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHc
Confidence 865321 12456789999999999999999999999988888776 566666666666
Q ss_pred CCHHHHHHHHhcc-cCCCCCcCCCCCChHHHHHHHcCC---------HHHHHHHHhcCcccc------ccCCCCCChHHH
Q 006054 250 NDTEMTKVLLDSS-IGTQTSKADQQGWLPLHLAAHLGY---------YNVVKELLKADKSAA------YKADNEGKIPLH 313 (663)
Q Consensus 250 ~~~~~v~~Ll~~~-~g~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------~~~~~~g~tpLh 313 (663)
|+.+++++|++.. .|++++.+|.+|.||||+|+..|+ .+++++|++++++.. ...|..|.||||
T Consensus 159 g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~ 238 (273)
T 2pnn_A 159 NQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLA 238 (273)
T ss_dssp TCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred CCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHH
Confidence 6666666666621 156666666666666666666665 556666666555542 124444555555
Q ss_pred HHHhcCCHHHHHHHHHcCC
Q 006054 314 LAAGKGRLNTVQELIMSCP 332 (663)
Q Consensus 314 ~Aa~~g~~~~v~~Ll~~~~ 332 (663)
+|+..|+.++++.|++++.
T Consensus 239 ~A~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 239 LAASSGKIGVLAYILQREI 257 (273)
T ss_dssp HHHHTTCHHHHHHHHHHHT
T ss_pred HHHHhChHHHHHHHHHCCC
Confidence 5555555555555555444
No 48
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.96 E-value=9.3e-29 Score=246.68 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=151.0
Q ss_pred CCCcHHHHHHHhccHH----HHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHc---CCHHHHHHHHHc
Q 006054 122 KGETLLHIAARHGHAD----VVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARY---NQIDVVKMLTKE 194 (663)
Q Consensus 122 ~g~T~Lh~A~~~g~~~----iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~---g~~~iv~~Ll~~ 194 (663)
.|.||||.|+..|+.+ ++++|++.+.+++... ..++..|.||||+|+.. |+.+++++|++.
T Consensus 1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~------------~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~ 68 (256)
T 2etb_A 1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSA------------YTEGSTGKTCLMKAVLNLQDGVNACIMPLLQI 68 (256)
T ss_dssp CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG------------GSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHH
T ss_pred CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCccccc------------ccCCCCCCCHHHHHHHccccchHHHHHHHHhc
Confidence 4789999999999997 6677777888765310 12578899999999999 999999999998
Q ss_pred CCCCCC----------CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCC-------------CCCHHHHHHhcCC
Q 006054 195 DPSLPY----------DANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPM-------------GRTALHAAAFRND 251 (663)
Q Consensus 195 ~~~~~~----------~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~-------------g~t~L~~A~~~~~ 251 (663)
+++... ..+..|.||||+|+..|+.+++++|+++|++++..+.. |.||||.|+..|+
T Consensus 69 g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~ 148 (256)
T 2etb_A 69 DKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQ 148 (256)
T ss_dssp HHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTC
T ss_pred CCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCC
Confidence 765432 23467999999999999999999999999999888776 7788888888888
Q ss_pred HHHHHHHHh---cccCCCCCcCCCCCChHHHHHHH--cCCHH-------HHHHHHhcCcccc------ccCCCCCChHHH
Q 006054 252 TEMTKVLLD---SSIGTQTSKADQQGWLPLHLAAH--LGYYN-------VVKELLKADKSAA------YKADNEGKIPLH 313 (663)
Q Consensus 252 ~~~v~~Ll~---~~~g~~~~~~d~~g~tpLh~A~~--~g~~~-------iv~~Ll~~~~~~~------~~~~~~g~tpLh 313 (663)
.+++++|++ . |++++.+|.+|.||||+|+. .++.+ ++++|++++++.. +..|..|.||||
T Consensus 149 ~~~v~~Ll~~~~~--ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~ 226 (256)
T 2etb_A 149 WDVVTYLLENPHQ--PASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLK 226 (256)
T ss_dssp HHHHHHHHHCSSC--CCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH
T ss_pred HHHHHHHHhcccc--CCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHH
Confidence 888888887 5 67777777777888888777 66666 7777777766652 345566666666
Q ss_pred HHHhcCCHHHHHHHHHcCC
Q 006054 314 LAAGKGRLNTVQELIMSCP 332 (663)
Q Consensus 314 ~Aa~~g~~~~v~~Ll~~~~ 332 (663)
+|+..|+.++++.|+++++
T Consensus 227 ~A~~~g~~~~v~~Ll~~g~ 245 (256)
T 2etb_A 227 LAAKEGKIEIFRHILQREF 245 (256)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHhCCC
Confidence 6666666666666666543
No 49
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.96 E-value=9.8e-29 Score=249.07 Aligned_cols=223 Identities=20% Similarity=0.194 Sum_probs=172.3
Q ss_pred cccCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHh---
Q 006054 57 LTPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARH--- 133 (663)
Q Consensus 57 ~~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~--- 133 (663)
.+..|.|+||.| +..|+ .++++.|++.+.+..... .......+..|.||||+|+..
T Consensus 9 ~d~~g~t~L~~A--~~~g~-------~~~v~~Ll~~~~~~~~~~------------~~~~~~~~~~g~tpL~~A~~~~~~ 67 (273)
T 2pnn_A 9 PRLYDRRSIFDA--VAQSN-------CQELESLLPFLQRSKKRL------------TDSEFKDPETGKTCLLKAMLNLHN 67 (273)
T ss_dssp --CCCHHHHHHH--HHTTC-------SSTTTTHHHHHHHSCCCT------------TSGGGSCTTTCCCHHHHHHHSCBT
T ss_pred CCcccchHHHHH--HHcCC-------HHHHHHHHHHHhhccccc------------CCcccccCcCCCCHHHHHHHHHhc
Confidence 677888888888 88888 888888883332211110 011124578999999999987
Q ss_pred ccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhC----CCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC------
Q 006054 134 GHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGM----TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDAN------ 203 (663)
Q Consensus 134 g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~----~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~------ 203 (663)
|+.++|++|++.|++... ...++.. .|..|.||||+|+..|+.+++++|++.++++.....
T Consensus 68 g~~~~v~~Ll~~ga~~~~---------~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~ 138 (273)
T 2pnn_A 68 GQNDTIALLLDVARKTDS---------LKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKK 138 (273)
T ss_dssp TBCHHHHHHHHHHHHTTC---------HHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSS
T ss_pred CChHHHHHHHHhhccccc---------hhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCcccccccccc
Confidence 999999999999876432 1122222 567899999999999999999999999988764332
Q ss_pred -------CCCCcHHHHHHHcCCHHHHHHHHH---hCCCCCCCCCCCCCHHHHHHhcCC---------HHHHHHHHhcccC
Q 006054 204 -------NAGETPLYVAAERGYKDVTQDILL---TCKSPADHGPMGRTALHAAAFRND---------TEMTKVLLDSSIG 264 (663)
Q Consensus 204 -------~~g~tpL~~A~~~g~~eiv~~Ll~---~~~~~~~~~~~g~t~L~~A~~~~~---------~~~v~~Ll~~~~g 264 (663)
..|.||||+|+..|+.+++++|++ .|++++..+..|.||||+|+..++ .+++++|++. |
T Consensus 139 ~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~--g 216 (273)
T 2pnn_A 139 TKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL--G 216 (273)
T ss_dssp CSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH--H
T ss_pred ccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh--h
Confidence 279999999999999999999999 999999999999999999999888 7999999998 5
Q ss_pred CCCC-------cCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChH
Q 006054 265 TQTS-------KADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIP 311 (663)
Q Consensus 265 ~~~~-------~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tp 311 (663)
++++ .+|.+|.||||+|+..|+.+++++|+++++.........+.+|
T Consensus 217 a~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~dp~~~~~~~~~~ 270 (273)
T 2pnn_A 217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECRHAAAHHH 270 (273)
T ss_dssp HHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTC------------
T ss_pred hhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHCCCCCchhhhhhhhhc
Confidence 6665 5899999999999999999999999999885435545555444
No 50
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=1.7e-27 Score=220.87 Aligned_cols=157 Identities=33% Similarity=0.418 Sum_probs=124.7
Q ss_pred cHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCC
Q 006054 125 TLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANN 204 (663)
Q Consensus 125 T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~ 204 (663)
++|+.||+.|+.++|+.|++.|++++. +|..|.||||+|+..++.+++++|++.+.++. ..+.
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~----------------~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~-~~d~ 68 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNA----------------SDSDGRTPLHHAAENGHKEVVKLLISKGADVN-AKDS 68 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-CCCT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCC----------------cCCCCCCHHHHHHHcCCHHHHHHHHhcccchh-hhcc
Confidence 368888888888888888888887765 67778888888888888888888888877764 5677
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHc
Q 006054 205 AGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHL 284 (663)
Q Consensus 205 ~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~ 284 (663)
.|.||||+|+..|+.+++++|++.|++++.++.+|+||||+|+..|+.+++++|++. |++++.+|.+|.||||+|+..
T Consensus 69 ~g~TpLh~A~~~g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~ 146 (169)
T 4gpm_A 69 DGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK--GADVNTSDSDGRTPLDLAREH 146 (169)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHT
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHHc
Confidence 788888888888888888888888888888888888888888888888888888877 677888888888888888888
Q ss_pred CCHHHHHHHHhcCccc
Q 006054 285 GYYNVVKELLKADKSA 300 (663)
Q Consensus 285 g~~~iv~~Ll~~~~~~ 300 (663)
|+.+++++|+++|+++
T Consensus 147 g~~~iv~~Ll~~GA~i 162 (169)
T 4gpm_A 147 GNEEVVKLLEKQGGWL 162 (169)
T ss_dssp TCHHHHHHHHTC----
T ss_pred CCHHHHHHHHHCCCCc
Confidence 8888888888887765
No 51
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.95 E-value=1.5e-27 Score=221.12 Aligned_cols=157 Identities=32% Similarity=0.447 Sum_probs=103.9
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHH
Q 006054 209 PLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYN 288 (663)
Q Consensus 209 pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~ 288 (663)
+|+.|+..|+.++|+.|++.|++++.++.+|.||||.|+..++.++++.|++. |.+++.+|.+|.||||+|+..|+.+
T Consensus 7 ~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~--gad~~~~d~~g~TpLh~A~~~g~~~ 84 (169)
T 4gpm_A 7 RLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISK--GADVNAKDSDGRTPLHHAAENGHKE 84 (169)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc--ccchhhhccCCCCHHHHHHHcCCHH
Confidence 46666666666666666666666666666666666666666666666666666 5666666666777777777777777
Q ss_pred HHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCC
Q 006054 289 VVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLG 368 (663)
Q Consensus 289 iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~ 368 (663)
++++|+++++++ +.+|.+|+||||+|+..|+.++++.|++.+.+. +.+|..|+||||+|+++|+.+++++|+++ |
T Consensus 85 ~v~~Ll~~gadv-n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~---G 159 (169)
T 4gpm_A 85 VVKLLISKGADV-NAKDSDGRTPLHHAAENGHKEVVKLLISKGADV-NTSDSDGRTPLDLAREHGNEEVVKLLEKQ---G 159 (169)
T ss_dssp HHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHTC----
T ss_pred HHHHHHHCcCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHHC---C
Confidence 777777666665 555666667777777777777777666665543 55667777777777777777777777766 6
Q ss_pred CCCC
Q 006054 369 NLVN 372 (663)
Q Consensus 369 ~~in 372 (663)
++++
T Consensus 160 A~ie 163 (169)
T 4gpm_A 160 GWLE 163 (169)
T ss_dssp ----
T ss_pred CCcC
Confidence 6554
No 52
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.95 E-value=3e-28 Score=243.01 Aligned_cols=190 Identities=22% Similarity=0.262 Sum_probs=115.8
Q ss_pred CChHHHHHHHcCCHH----HHHHHHHcCCCCCC---CCCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCC------
Q 006054 172 KDTALHEAARYNQID----VVKMLTKEDPSLPY---DANNAGETPLYVAAER---GYKDVTQDILLTCKSPADH------ 235 (663)
Q Consensus 172 g~t~L~~A~~~g~~~----iv~~Ll~~~~~~~~---~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~------ 235 (663)
|+||||.|+..|+.+ ++++|++.+.++.. ..+..|.||||+|+.. |+.+++++|++.|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 678888888888886 55666667777653 3677888888888888 8888888888887665532
Q ss_pred -----CCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCC-------------CChHHHHHHHcCCHHHHHHHHh--
Q 006054 236 -----GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQ-------------GWLPLHLAAHLGYYNVVKELLK-- 295 (663)
Q Consensus 236 -----~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~-------------g~tpLh~A~~~g~~~iv~~Ll~-- 295 (663)
+..|.||||.|+..|+.+++++|++. |++++..+.. |.||||+|+..|+.+++++|++
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~ 159 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVEN--GADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENP 159 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCS
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 24577777777777777777777766 5666666654 5555555555555555555555
Q ss_pred -cCccccccCCCCCChHHHHHHh--cCCHH-------HHHHHHHcCCCCc------ccccCCCCcHHHHHHHcCCHHHHH
Q 006054 296 -ADKSAAYKADNEGKIPLHLAAG--KGRLN-------TVQELIMSCPSSC------ELVDDRGWNVFHFALQSGSRRTIE 359 (663)
Q Consensus 296 -~~~~~~~~~~~~g~tpLh~Aa~--~g~~~-------~v~~Ll~~~~~~~------~~~d~~g~t~Lh~Av~~~~~~iv~ 359 (663)
.+.++ +..|.+|.||||+|+. .++.+ +++.|++.+.+.. +.+|..|+||||+|+.+|+.++++
T Consensus 160 ~~ga~~-n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 238 (256)
T 2etb_A 160 HQPASL-EATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238 (256)
T ss_dssp SCCCCT-TCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred ccCCCc-CccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence 44443 3444455555555554 44444 4444444443321 334444555555555555555555
Q ss_pred HHHhC
Q 006054 360 LLLKS 364 (663)
Q Consensus 360 ~Ll~~ 364 (663)
+|+++
T Consensus 239 ~Ll~~ 243 (256)
T 2etb_A 239 HILQR 243 (256)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 55443
No 53
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.95 E-value=5.6e-28 Score=241.59 Aligned_cols=202 Identities=19% Similarity=0.203 Sum_probs=156.3
Q ss_pred CCCCCcHHHHHHHhccHHHHHHHHH----hcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHH---HcCCHHHHHHHH
Q 006054 120 NTKGETLLHIAARHGHADVVKDLIA----ECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAA---RYNQIDVVKMLT 192 (663)
Q Consensus 120 ~~~g~T~Lh~A~~~g~~~iv~~Ll~----~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~---~~g~~~iv~~Ll 192 (663)
+..+.|+||.|++.|+.+.++.|++ .+.+.+..+ ...+..|.||||+|+ +.|+.+++++|+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~------------~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll 69 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEE------------FREPSTGKTCLPKALLNLSAGRNDTIPILL 69 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGG------------GSCTTTCCCHHHHHHTSCBTTBCTHHHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhh------------hhccCCCCcHHHHHHHHhhcCCHHHHHHHH
Confidence 5678999999999999996555554 887766421 124577999999999 779999999999
Q ss_pred HcCCCC----------CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC--------------CCCCCHHHHHHh
Q 006054 193 KEDPSL----------PYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHG--------------PMGRTALHAAAF 248 (663)
Q Consensus 193 ~~~~~~----------~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~--------------~~g~t~L~~A~~ 248 (663)
+.+.+. ....+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+.
T Consensus 70 ~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~ 149 (260)
T 3jxi_A 70 DIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAAC 149 (260)
T ss_dssp HHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred HhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHH
Confidence 986431 12344589999999999999999999999999998887 578888888888
Q ss_pred cCCHHHHHHHHhcc-cCCCCCcCCCCCChHHHHHHHcCC---------HHHHHHHHhcCcccc------ccCCCCCChHH
Q 006054 249 RNDTEMTKVLLDSS-IGTQTSKADQQGWLPLHLAAHLGY---------YNVVKELLKADKSAA------YKADNEGKIPL 312 (663)
Q Consensus 249 ~~~~~~v~~Ll~~~-~g~~~~~~d~~g~tpLh~A~~~g~---------~~iv~~Ll~~~~~~~------~~~~~~g~tpL 312 (663)
.|+.+++++|++.+ .|++++.+|.+|.||||+|+..++ .+++++|++++++.. +..|..|.|||
T Consensus 150 ~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL 229 (260)
T 3jxi_A 150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL 229 (260)
T ss_dssp TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred cCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH
Confidence 88888888888821 278888888888888888887776 578888888776652 34566677777
Q ss_pred HHHHhcCCHHHHHHHHHcCCC
Q 006054 313 HLAAGKGRLNTVQELIMSCPS 333 (663)
Q Consensus 313 h~Aa~~g~~~~v~~Ll~~~~~ 333 (663)
|+|+..|+.++++.|+++++.
T Consensus 230 ~~A~~~g~~~~v~~Ll~~g~~ 250 (260)
T 3jxi_A 230 MMAAKTGKIGIFQHIIRREIA 250 (260)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhCCC
Confidence 777777777777777766543
No 54
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.94 E-value=5.4e-27 Score=234.40 Aligned_cols=193 Identities=21% Similarity=0.256 Sum_probs=128.1
Q ss_pred CcCCChHHHHHHHcCCHHHHHHHH----HcCCCCCCC---CCCCCCcHHHHHH---HcCCHHHHHHHHHhCCCC------
Q 006054 169 NEAKDTALHEAARYNQIDVVKMLT----KEDPSLPYD---ANNAGETPLYVAA---ERGYKDVTQDILLTCKSP------ 232 (663)
Q Consensus 169 ~~~g~t~L~~A~~~g~~~iv~~Ll----~~~~~~~~~---~~~~g~tpL~~A~---~~g~~eiv~~Ll~~~~~~------ 232 (663)
+..++|+||.|++.|+.+.++.|+ +.+.++... .+..|.||||+|+ ..|+.+++++|++.|+++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~ 81 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF 81 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence 345789999999999998554444 477766522 2367899999998 678999999999887442
Q ss_pred -----CCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCC--------------CCCChHHHHHHHcCCHHHHHHH
Q 006054 233 -----ADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKAD--------------QQGWLPLHLAAHLGYYNVVKEL 293 (663)
Q Consensus 233 -----~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d--------------~~g~tpLh~A~~~g~~~iv~~L 293 (663)
+..+..|.||||+|+..|+.+++++|++. |++++..+ ..|.||||+|+..|+.+++++|
T Consensus 82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~--ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L 159 (260)
T 3jxi_A 82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEK--GADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159 (260)
T ss_dssp HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred hcccccccccCCCCHHHHHHHcCCHHHHHHHHhC--CCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 23334677777777777777777777776 56666666 4566666666666666666666
Q ss_pred Hh---cCccccccCCCCCChHHHHHHhcCC---------HHHHHHHHHcCCCCc------ccccCCCCcHHHHHHHcCCH
Q 006054 294 LK---ADKSAAYKADNEGKIPLHLAAGKGR---------LNTVQELIMSCPSSC------ELVDDRGWNVFHFALQSGSR 355 (663)
Q Consensus 294 l~---~~~~~~~~~~~~g~tpLh~Aa~~g~---------~~~v~~Ll~~~~~~~------~~~d~~g~t~Lh~Av~~~~~ 355 (663)
++ .+.++ +..|..|.||||+|+..|+ .++++.|++.+.+.. +..|..|+||||+|+.+|+.
T Consensus 160 l~~~~~ga~~-~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~ 238 (260)
T 3jxi_A 160 TENGHKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKI 238 (260)
T ss_dssp HHCSSCCCCT-TCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCH
T ss_pred HhccccCCCC-cccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCCH
Confidence 66 55554 4556666666666666555 466666666554331 34566666666666666666
Q ss_pred HHHHHHHhC
Q 006054 356 RTIELLLKS 364 (663)
Q Consensus 356 ~iv~~Ll~~ 364 (663)
+++++|+++
T Consensus 239 ~~v~~Ll~~ 247 (260)
T 3jxi_A 239 GIFQHIIRR 247 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 666666655
No 55
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.94 E-value=6.6e-26 Score=215.50 Aligned_cols=166 Identities=22% Similarity=0.252 Sum_probs=148.2
Q ss_pred hhhhhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHH
Q 006054 113 PGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLT 192 (663)
Q Consensus 113 ~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll 192 (663)
+.+++.+|..|.||||+|+..|+.+++++|++.+.+++. .+..|.||||+|+..|+.+++++|+
T Consensus 25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll 88 (192)
T 2rfm_A 25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED----------------KDIEGSTALIWAVKNNRLGIAEKLL 88 (192)
T ss_dssp HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccc----------------ccccCccHHHHHHHcCCHHHHHHHH
Confidence 445677899999999999999999999999999887665 6778999999999999999999999
Q ss_pred HcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCC
Q 006054 193 KEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQ 272 (663)
Q Consensus 193 ~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~ 272 (663)
+.++++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++. |++++.+|.
T Consensus 89 ~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~ 165 (192)
T 2rfm_A 89 SKGSNVN-TKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL--GADISARDL 165 (192)
T ss_dssp HHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHT--TCCTTCBCT
T ss_pred HCCCCCC-CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CCCCCCcCC
Confidence 9988765 5778899999999999999999999999999999999999999999999999999999988 788888999
Q ss_pred CCChHHHHHHHcCCHHHHHHHHhcC
Q 006054 273 QGWLPLHLAAHLGYYNVVKELLKAD 297 (663)
Q Consensus 273 ~g~tpLh~A~~~g~~~iv~~Ll~~~ 297 (663)
.|.||||+|+..|+.+++++|++.+
T Consensus 166 ~g~t~l~~A~~~~~~~~v~~Ll~~~ 190 (192)
T 2rfm_A 166 TGLTAEASARIFGRQEVIKIFTEVR 190 (192)
T ss_dssp TSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcHHHHHHHHhcc
Confidence 9999999999999999999998764
No 56
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.94 E-value=3.9e-26 Score=230.26 Aligned_cols=190 Identities=19% Similarity=0.210 Sum_probs=92.3
Q ss_pred CcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 006054 124 ETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDAN 203 (663)
Q Consensus 124 ~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~ 203 (663)
.+++|.|+..|+.+.++.+++.+.+ ..++.+|..|.||||+|+..|+.+++++|++.++......+
T Consensus 77 ~~~l~~a~~~~~~~~~~~l~~~~~~--------------~~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~ 142 (276)
T 4hbd_A 77 RSDAHPELVRRHLVTFRAMSARLLD--------------YVVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQN 142 (276)
T ss_dssp STTCCHHHHHHHHHHHHHHCHHHHH--------------HHHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCC
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHh--------------hcCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCC
Confidence 3445555555555555555543321 12333455555555555555555555555555542233445
Q ss_pred CCCCcHHHHHH-----HcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHH
Q 006054 204 NAGETPLYVAA-----ERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278 (663)
Q Consensus 204 ~~g~tpL~~A~-----~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpL 278 (663)
..|.||||+|+ ..++.+++++|++.|.+.+..+..|.||||.|+..|+.+++++|++. |++++.+|.+|.|||
T Consensus 143 ~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~--gad~n~~d~~G~TpL 220 (276)
T 4hbd_A 143 RAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLAC--EADVNVQDDDGSTAL 220 (276)
T ss_dssp TTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred CCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhC--CCCCCCCCCCCCCHH
Confidence 55555555555 33445555555555544444444455555555555555555555544 444444455555555
Q ss_pred HHHHHcCCHHHHHHHHh-cCccccccCCCCCChHHHHHHhcCCHHHHHHHHHc
Q 006054 279 HLAAHLGYYNVVKELLK-ADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMS 330 (663)
Q Consensus 279 h~A~~~g~~~iv~~Ll~-~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~ 330 (663)
|+|+..|+.+++++|++ .+.+. +..|.+|.||||+|+..|+.++++.|+++
T Consensus 221 h~A~~~g~~~iv~~Ll~~~gad~-~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 221 MCACEHGHKEIAGLLLAVPSCDI-SLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHHHHHTCHHHHHHHHTSTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHhcCCCCC-cCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 55555555555554444 33333 33444444444444444444444444443
No 57
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.93 E-value=5.8e-26 Score=228.94 Aligned_cols=194 Identities=22% Similarity=0.205 Sum_probs=173.8
Q ss_pred ccCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHH
Q 006054 58 TPNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHAD 137 (663)
Q Consensus 58 ~~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~ 137 (663)
+..+.+++|.| +..|+ .+.++.++ +. .....++..|.+|.||||+|+..|+.+
T Consensus 73 ~~~~~~~l~~a--~~~~~-------~~~~~~l~-----------~~-------~~~~~~n~~d~~g~T~Lh~A~~~g~~~ 125 (276)
T 4hbd_A 73 RLACRSDAHPE--LVRRH-------LVTFRAMS-----------AR-------LLDYVVNIADSNGNTALHYSVSHANFP 125 (276)
T ss_dssp HHHHSTTCCHH--HHHHH-------HHHHHHHC-----------HH-------HHHHHHTCCCTTSCCHHHHHHHTTCHH
T ss_pred HHHhccCCCHH--HHHHH-------HHHHHHHH-----------HH-------HHhhcCcCCCCCCCCHHHHHHHCCCHH
Confidence 33467889999 99999 99999987 21 122346788999999999999999999
Q ss_pred HHHHHHHhcC-CCCCCCCcchhHHHHHHhhCCCcCCChHHHHHH-----HcCCHHHHHHHHHcCCCCCCCCCCCCCcHHH
Q 006054 138 VVKDLIAECK-KPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAA-----RYNQIDVVKMLTKEDPSLPYDANNAGETPLY 211 (663)
Q Consensus 138 iv~~Ll~~~~-~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~-----~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~ 211 (663)
+|++|++.|+ +.+. .+..|.||||+|+ ..++.++++.|++.+... ...+..|.||||
T Consensus 126 ~v~~Ll~~g~~~~~~----------------~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~-~~~~~~g~tpLh 188 (276)
T 4hbd_A 126 VVQQLLDSGVCKVDK----------------QNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNIN-AKASQAGQTALM 188 (276)
T ss_dssp HHHHHHHTSCCCTTC----------------CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTT-CCCTTTCCCHHH
T ss_pred HHHHHHHCCCCcCCC----------------CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCc-cccCCCCCCHHH
Confidence 9999999997 5544 7888999999999 678999999999998664 467788999999
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHh-cccCCCCCcCCCCCChHHHHHHHcCCHHHH
Q 006054 212 VAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLD-SSIGTQTSKADQQGWLPLHLAAHLGYYNVV 290 (663)
Q Consensus 212 ~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv 290 (663)
+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|++ . |++++.+|.+|.||||+|+..|+.+++
T Consensus 189 ~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~--gad~~~~d~~g~TpL~~A~~~g~~~iv 266 (276)
T 4hbd_A 189 LAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVP--SCDISLTDRDGSTALMVALDAGQSEIA 266 (276)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTST--TCCTTCCCTTSCCHHHHHHHHTCHHHH
T ss_pred HHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC--CCCCcCcCCCCCCHHHHHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999998 5 799999999999999999999999999
Q ss_pred HHHHhcC
Q 006054 291 KELLKAD 297 (663)
Q Consensus 291 ~~Ll~~~ 297 (663)
++|+++.
T Consensus 267 ~~Ll~~~ 273 (276)
T 4hbd_A 267 SMLYSRM 273 (276)
T ss_dssp HHHHHHC
T ss_pred HHHHhcc
Confidence 9999875
No 58
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.93 E-value=3.7e-25 Score=205.20 Aligned_cols=160 Identities=24% Similarity=0.258 Sum_probs=135.8
Q ss_pred CCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 006054 122 KGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYD 201 (663)
Q Consensus 122 ~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 201 (663)
.|.||||.|+..|+.+++++|++.+.+++. ++..|.||||+|+..|+.+++++|++.+++.. .
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~ 64 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINH----------------TDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-L 64 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCC----------------CCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC-C
Confidence 578899999999999999999988876554 67778899999999999999999988877754 5
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHH
Q 006054 202 ANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLA 281 (663)
Q Consensus 202 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A 281 (663)
.+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++.+++++|++. |.+++.+|.+|.||||+|
T Consensus 65 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l~~A 142 (167)
T 3v31_A 65 LGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLES--GADPTIETDSGYNSMDLA 142 (167)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred cCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHH
Confidence 677888889988888888888888888888888888888888888888888888888887 778888888888888888
Q ss_pred HHcCCHHHHHHHHhcCccc
Q 006054 282 AHLGYYNVVKELLKADKSA 300 (663)
Q Consensus 282 ~~~g~~~iv~~Ll~~~~~~ 300 (663)
+..|+.+++++|++++.+.
T Consensus 143 ~~~~~~~~~~~L~~~~~~~ 161 (167)
T 3v31_A 143 VALGYRSVQQVIESHLLKL 161 (167)
T ss_dssp HHHTCHHHHHHHHHHHHHH
T ss_pred HHcCcHHHHHHHHHHHHHH
Confidence 8888888888888876654
No 59
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.93 E-value=3.1e-25 Score=210.84 Aligned_cols=162 Identities=20% Similarity=0.224 Sum_probs=96.0
Q ss_pred hhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHH
Q 006054 165 QGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALH 244 (663)
Q Consensus 165 l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~ 244 (663)
.+.+|..|.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 106 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLM 106 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTT-CCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccc-cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence 33455666666666666666666666666655543 34555666666666666666666666666666666666666666
Q ss_pred HHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHH
Q 006054 245 AAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTV 324 (663)
Q Consensus 245 ~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v 324 (663)
.|+..++.+++++|++. |.+++.+|.+|.||||+|+..|+.+++++|++++.+. +..|..|.||+|+|+..|+.+++
T Consensus 107 ~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~v 183 (192)
T 2rfm_A 107 WSIIFGYSEMSYFLLEH--GANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADI-SARDLTGLTAEASARIFGRQEVI 183 (192)
T ss_dssp HHHHHTCHHHHHHHHHT--TCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCT-TCBCTTSCBHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCcCCCCCCHHHHHHHhCcHHHH
Confidence 66666666666666655 5555555556666666666666666666666555544 34455555555555555555555
Q ss_pred HHHHHc
Q 006054 325 QELIMS 330 (663)
Q Consensus 325 ~~Ll~~ 330 (663)
++|++.
T Consensus 184 ~~Ll~~ 189 (192)
T 2rfm_A 184 KIFTEV 189 (192)
T ss_dssp HHHHHH
T ss_pred HHHHhc
Confidence 555543
No 60
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=1.5e-25 Score=208.95 Aligned_cols=123 Identities=22% Similarity=0.220 Sum_probs=58.1
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCH
Q 006054 173 DTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDT 252 (663)
Q Consensus 173 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 252 (663)
.||||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.
T Consensus 3 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 82 (172)
T 3v30_A 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYT 82 (172)
T ss_dssp -CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCH
T ss_pred hhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHCCCH
Confidence 34555555555555555555554443334444455555555555555555555555544444444444444444444444
Q ss_pred HHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 006054 253 EMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297 (663)
Q Consensus 253 ~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~ 297 (663)
+++++|++. |.+++.+|..|.||||+|+..|+.+++++|++++
T Consensus 83 ~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g 125 (172)
T 3v30_A 83 DIVGLLLER--DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARG 125 (172)
T ss_dssp HHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 444444444 3444444444444444444444444444444433
No 61
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=2.1e-25 Score=205.68 Aligned_cols=155 Identities=27% Similarity=0.395 Sum_probs=98.1
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcC
Q 006054 206 GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLG 285 (663)
Q Consensus 206 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g 285 (663)
..||||.|+..|+.+++++|+++|.+++..+..|.||||.|+. ++.+++++|++. |.+++.+|..|.||||+|+..|
T Consensus 5 ~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLR--GANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHHT
T ss_pred HhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcC
Confidence 3455666666666666666666666555566666666666665 666666666665 5556666666666666666666
Q ss_pred CHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 286 YYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 286 ~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
+.+++++|++++.++ +..|.+|.||||+|+..|+.+++++|++.+++.++..|..|+||||+|+.+++.+++++|+++
T Consensus 82 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 82 FLDTLQTLLEFQADV-NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 666666666665554 445666666666666666666666666666665566666666777777777777777766666
No 62
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.93 E-value=2e-25 Score=208.14 Aligned_cols=169 Identities=21% Similarity=0.206 Sum_probs=151.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCC-CCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHc
Q 006054 206 GETPLYVAAERGYKDVTQDILLTCKS-PADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHL 284 (663)
Q Consensus 206 g~tpL~~A~~~g~~eiv~~Ll~~~~~-~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~ 284 (663)
+.+|||.|+..|+.+++++|++.+.+ ++..+..|.||||.|+..|+.+++++|++. |.+++..|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~ 79 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEW--GADPHILAKERESALSLASTG 79 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH--TCCTTCCCTTCCCHHHHHHHT
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCchhhcccCCCHHHHHHHC
Confidence 46899999999999999999999977 788899999999999999999999999998 789999999999999999999
Q ss_pred CCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 285 GYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 285 g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
|+.+++++|++++.+. +..|..|.||||+|+..|+.++++.|++.+.+. +..|..|+||||+|+.+++.+++++|+++
T Consensus 80 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (172)
T 3v30_A 80 GYTDIVGLLLERDVDI-NIYDWNGGTPLLYAVRGNHVKCVEALLARGADL-TTEADSGYTPMDLAVALGYRKVQQVIENH 157 (172)
T ss_dssp TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHhCcHHHHHHHHHH
Confidence 9999999999999887 678899999999999999999999999998765 77899999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCcH
Q 006054 365 PSLGNLVNEKNDDGNTP 381 (663)
Q Consensus 365 ~~~~~~in~~d~~G~Tp 381 (663)
+..+..++..|.||
T Consensus 158 ---~~~~~~~~~~~~~p 171 (172)
T 3v30_A 158 ---ILKLFQSNLVPADP 171 (172)
T ss_dssp ---HHHHSCC-------
T ss_pred ---HHHHhcccCCCCCC
Confidence 88888899999887
No 63
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.93 E-value=9.1e-25 Score=203.04 Aligned_cols=159 Identities=26% Similarity=0.316 Sum_probs=116.1
Q ss_pred cCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 006054 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSL 198 (663)
Q Consensus 119 ~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 198 (663)
....+.|+||.|++.|+.++|++|++.|.+++. ++..|.||||+|+..|+.+++++|++.+.++
T Consensus 10 ~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 73 (169)
T 2y1l_E 10 HGSDLGKKLLEAARAGRDDEVRILMANGADVNA----------------EDASGWTPLHLAAFNGHLEIVEVLLKNGADV 73 (169)
T ss_dssp ---CHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CCCcccchHHHHHHcCCHHHHHHHHHCCCCCCC----------------CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 345566778888888888888888877776554 5666777777777777777777777777665
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHH
Q 006054 199 PYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278 (663)
Q Consensus 199 ~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpL 278 (663)
. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++. |.+++.+|..|.|||
T Consensus 74 ~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~l 150 (169)
T 2y1l_E 74 N-AVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKN--GADVNAQDKFGKTAF 150 (169)
T ss_dssp T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHH
T ss_pred C-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHH
Confidence 4 4566777777777777777777777777777777777777777777777777777777776 667777777777777
Q ss_pred HHHHHcCCHHHHHHHHhc
Q 006054 279 HLAAHLGYYNVVKELLKA 296 (663)
Q Consensus 279 h~A~~~g~~~iv~~Ll~~ 296 (663)
|+|+..|+.+++++|++.
T Consensus 151 ~~A~~~~~~~~~~~L~~~ 168 (169)
T 2y1l_E 151 DISIDNGNEDLAEILQKL 168 (169)
T ss_dssp HHHHHTTCHHHHHHHHTC
T ss_pred HHHHHhCCHHHHHHHHHc
Confidence 777777777777777764
No 64
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.93 E-value=4.7e-25 Score=203.30 Aligned_cols=159 Identities=25% Similarity=0.302 Sum_probs=149.0
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Q 006054 171 AKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRN 250 (663)
Q Consensus 171 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 250 (663)
...||||.|+..|+.+++++|++.++++. ..+..|.||||+|+. |+.+++++|++.|++++..+..|.||||.|+..+
T Consensus 4 ~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~ 81 (162)
T 1ihb_A 4 PWGNELASAAARGDLEQLTSLLQNNVNVN-AQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARAG 81 (162)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHTTSCCCTT-CCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred hHhhHHHHHHHcCCHHHHHHHHhCCCCcc-ccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC
Confidence 45799999999999999999999988865 678899999999999 9999999999999999999999999999999999
Q ss_pred CHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHc
Q 006054 251 DTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMS 330 (663)
Q Consensus 251 ~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~ 330 (663)
+.+++++|++. |.+++.+|.+|.||||+|+..|+.+++++|++++++..+..+..|.||||+|+..|+.++++.|+++
T Consensus 82 ~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~ 159 (162)
T 1ihb_A 82 FLDTLQTLLEF--QADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQAN 159 (162)
T ss_dssp CHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred CHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHh
Confidence 99999999998 7899999999999999999999999999999999987678899999999999999999999999998
Q ss_pred CCC
Q 006054 331 CPS 333 (663)
Q Consensus 331 ~~~ 333 (663)
+.+
T Consensus 160 GAd 162 (162)
T 1ihb_A 160 GAG 162 (162)
T ss_dssp C--
T ss_pred CCC
Confidence 763
No 65
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.93 E-value=8.5e-29 Score=258.97 Aligned_cols=296 Identities=15% Similarity=0.057 Sum_probs=192.3
Q ss_pred CChhHHHhhhhccccccccCCCcceeeecccC-CCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhcc
Q 006054 41 GHTDQFRAHATMLDQILTPNENTILHIHITAR-PNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKT 119 (663)
Q Consensus 41 g~~~~v~~Ll~~~~~~~~~~g~t~Lh~A~~a~-~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~ 119 (663)
+..+.+..++....++....+.+++++| .. .++ .+++++++ ..
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~~ll~~~~a--~~~~~~-------~~~~~~l~---------------------------~~ 88 (376)
T 2aja_A 45 SYKEAIHIFLPGTKNMEQVRQLLCLYYA--HYNRNA-------KQLWSDAH---------------------------KK 88 (376)
T ss_dssp CHHHHHHHCCCCSSHHHHHHHHHHHHHH--HTTTTC-------TTHHHHHH---------------------------HH
T ss_pred cHHHHHHHHhcCCCCHHHHHHHHHHHHH--HhcCCC-------HHHHHHHH---------------------------Hc
Confidence 3345555555443333222344566666 55 456 67777776 22
Q ss_pred CCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCC
Q 006054 120 NTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLP 199 (663)
Q Consensus 120 ~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~ 199 (663)
+.++.||||+|++.|+.++|++|++.|+..... ...+..|.||||+|+..|+.+++++|++++++..
T Consensus 89 g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~-------------~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~ 155 (376)
T 2aja_A 89 GIKSEVICFVAAITGCSSALDTLCLLLTSDEIV-------------KVIQAENYQAFRLAAENGHLHVLNRLCELAPTEI 155 (376)
T ss_dssp TCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSC-------------C--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTH
T ss_pred CCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHH-------------HHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcc
Confidence 344569999999999999999999988732210 1134457789999999999999999999986421
Q ss_pred --CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCC--CCCCCCCHHHHHH-hcCCHHHHHHHHhcccCCCCCcCCCCC
Q 006054 200 --YDANNAGETPLYVAAERGYKDVTQDILLTCKSPAD--HGPMGRTALHAAA-FRNDTEMTKVLLDSSIGTQTSKADQQG 274 (663)
Q Consensus 200 --~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~--~~~~g~t~L~~A~-~~~~~~~v~~Ll~~~~g~~~~~~d~~g 274 (663)
...+.. .||||+|+..|+.+++++|+++|++++. .+..|.||||.|+ ..|+.+++++|++. |. .|
T Consensus 156 ~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~--ga-------~~ 225 (376)
T 2aja_A 156 MAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC--PV-------ML 225 (376)
T ss_dssp HHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS--HH-------HH
T ss_pred ccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC--CC-------cc
Confidence 111222 8999999999999999999999988776 7778899999999 99999999999986 32 27
Q ss_pred ChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHH------------HHHHHcCCCCcccccCCC
Q 006054 275 WLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTV------------QELIMSCPSSCELVDDRG 342 (663)
Q Consensus 275 ~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v------------~~Ll~~~~~~~~~~d~~g 342 (663)
.||||.|+..|+.+++++|++++++.. .. .++++.|+.+|+.+++ +.++..+.
T Consensus 226 ~taL~~Aa~~g~~evv~lL~~~ga~~~-~~----~~~l~~A~~~g~~~vv~~~~~~~~~~~~~~li~~~~---------- 290 (376)
T 2aja_A 226 AYAEIHEFEYGEKYVNPFIARHVNRLK-EM----HDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRND---------- 290 (376)
T ss_dssp HHHHHCTTTTTTTTHHHHHHHHHHHHH-HH----HTTTTTTSSSSCCCCSSHHHHHHHHHHHHHHHHHCC----------
T ss_pred chHHHHHHHCCCHHHHHHHHhcCcccc-cc----cHHHHHHHHCCChhhhcHHhhhhhHHHHHHHHHcch----------
Confidence 899999999999999999999887652 21 2366777777776633 23333221
Q ss_pred CcHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCCCCcHHHHHHhCCCccc-ccccccCcCccccccCCCChHHHHhh
Q 006054 343 WNVFHFALQSGSRRTIELLLKSPSLGNL--VNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAFNQNNCSAEDIIRS 419 (663)
Q Consensus 343 ~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~--in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~n~~g~t~l~ia~~ 419 (663)
.+..+.+++|++.+..... ....++.++||||+|+..|+..+ ++|++.| ...+..|+|+.+++..
T Consensus 291 ---------~~~~~~~~~Ll~~~~vk~l~~~g~~~n~~~~~L~~A~~~g~~e~v~lLl~~~---~v~~~~~~~~~~~~~~ 358 (376)
T 2aja_A 291 ---------EVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIP---SVLALTKANNYYINET 358 (376)
T ss_dssp ---------GGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHHHHHHHTCTTHHHHHTTSH---HHHHSCC---------
T ss_pred ---------hhHHHHHHHHHhChhhhhhhccCCCCCCccHHHHHHHHcCcHHHHHHHHcCh---HHHHHHHHhccccccc
Confidence 1235566666654321111 12233456778888887775544 7777654 6667777777777766
Q ss_pred ccc
Q 006054 420 DKL 422 (663)
Q Consensus 420 ~~~ 422 (663)
.+.
T Consensus 359 ~~~ 361 (376)
T 2aja_A 359 GGR 361 (376)
T ss_dssp ---
T ss_pred ccc
Confidence 544
No 66
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.92 E-value=1.6e-24 Score=201.48 Aligned_cols=158 Identities=31% Similarity=0.424 Sum_probs=108.3
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHH
Q 006054 203 NNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAA 282 (663)
Q Consensus 203 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~ 282 (663)
...+.+||+.|+..|+.+++++|+++|.+++..+..|.||||.|+..|+.+++++|++. |.+++..|..|.||||+|+
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~ 88 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKN--GADVNAVDHAGMTPLRLAA 88 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHH
Confidence 34456667777777777777777777766666666677777777777777777777766 5666666677777777777
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHH
Q 006054 283 HLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLL 362 (663)
Q Consensus 283 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll 362 (663)
..|+.+++++|++++.+. +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+.+++.+++++|+
T Consensus 89 ~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~ 166 (169)
T 2y1l_E 89 LFGHLEIVEVLLKNGADV-NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADV-NAQDKFGKTAFDISIDNGNEDLAEILQ 166 (169)
T ss_dssp HTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHhCCHHHHHHHH
Confidence 777777777777766665 455666777777777777777777777766553 556677777777777777777777776
Q ss_pred hC
Q 006054 363 KS 364 (663)
Q Consensus 363 ~~ 364 (663)
+.
T Consensus 167 ~~ 168 (169)
T 2y1l_E 167 KL 168 (169)
T ss_dssp TC
T ss_pred Hc
Confidence 54
No 67
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.92 E-value=1.1e-24 Score=201.89 Aligned_cols=155 Identities=21% Similarity=0.231 Sum_probs=81.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcC
Q 006054 206 GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLG 285 (663)
Q Consensus 206 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g 285 (663)
|.||||.|+..|+.+++++|++.+.+++..+..|.||||.|+..|+.+++++|++. |.+++..|..|.||||+|+..|
T Consensus 3 ~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~ 80 (167)
T 3v31_A 3 NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQN--GADPQLLGKGRESALSLACSKG 80 (167)
T ss_dssp TCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHT
T ss_pred CcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHcC
Confidence 44555555555555555555555555555555555555555555555555555554 4445555555555555555555
Q ss_pred CHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 286 YYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 286 ~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
+.+++++|++.+.+. +..|..|.||||+|+..|+.++++.|++.+.+. +..|..|+||||+|+.+|+.+++++|+++
T Consensus 81 ~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~L~~~ 157 (167)
T 3v31_A 81 YTDIVKMLLDCGVDV-NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADP-TIETDSGYNSMDLAVALGYRSVQQVIESH 157 (167)
T ss_dssp CHHHHHHHHHHTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHCCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHH
Confidence 555555555554444 344455555555555555555555555544433 44455555555555555555555555544
No 68
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=6.2e-27 Score=229.01 Aligned_cols=176 Identities=16% Similarity=0.098 Sum_probs=102.9
Q ss_pred CCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhc
Q 006054 239 GRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGK 318 (663)
Q Consensus 239 g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~ 318 (663)
+.||||.|+..|+.+++++|++. |.+++.+|.+|.||||+|+..|+.+++++|++.+.++ +..|..|.||||+|+..
T Consensus 21 ~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~-n~~d~~g~tpLh~A~~~ 97 (229)
T 2vge_A 21 PLVLLLDAALTGELEVVQQAVKE--MNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV-NSPDSHGWTPLHCAASC 97 (229)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH--SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTCCCHHHHHHHT
T ss_pred hhHHHHHHHHcCCHHHHHHHHhc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC-CCCCCCCCCHHHHHHHc
Confidence 33445555555555555555554 4455555555555555555555555555555555544 44455555666666666
Q ss_pred CCHHHHHHHHHcCCCCcccccCCCCcHHHHH--HHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCcccccc
Q 006054 319 GRLNTVQELIMSCPSSCELVDDRGWNVFHFA--LQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIPSFV 396 (663)
Q Consensus 319 g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A--v~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~~lL 396 (663)
|+.++++.|++.+++.....+..|+||||+| +..++.+++++|++. |++++.+|..|.||+|.++... ..++|
T Consensus 98 g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~---ga~~~~~~~~~~~~l~~~~~~~--~~~~l 172 (229)
T 2vge_A 98 NDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV---EQSMGLMNSGAVYALWDYSAEF--GDELS 172 (229)
T ss_dssp TCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH---HHHTTTSGGGEEEESSCBCCSS--TTBCC
T ss_pred CCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc---CCCcccccCCchHHHHHHhhcc--ccccC
Confidence 6666666666555544222235666777766 666777777777766 6667777777777776544333 22456
Q ss_pred cccCcC--ccccccCCCChHHHHhhccc
Q 006054 397 CHPKVD--RLAFNQNNCSAEDIIRSDKL 422 (663)
Q Consensus 397 ~~~~ad--~~~~n~~g~t~l~ia~~~~~ 422 (663)
++.|++ ++.+|..|.|||++|...+.
T Consensus 173 l~~ga~~~~~~~d~~G~TpL~~A~~~g~ 200 (229)
T 2vge_A 173 FREGESVTVLRRDGPEETDWWWAALHGQ 200 (229)
T ss_dssp BCTTCEEEEEESSCTTCSSEEEEEETTE
T ss_pred ccccccccccccCCCcccHHHHHHHcCC
Confidence 666666 55666677777777765443
No 69
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=3.1e-24 Score=195.86 Aligned_cols=150 Identities=23% Similarity=0.265 Sum_probs=88.3
Q ss_pred CcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCC
Q 006054 124 ETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDAN 203 (663)
Q Consensus 124 ~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~ 203 (663)
.||||.|++.|+.+++++|++.|.+.+ .+..|.||||+|+..|+.+++++|++.++++. ..+
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~-----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~-~~~ 64 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT-----------------TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-ART 64 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC-----------------CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTT-CCC
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC-----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-CCC
Confidence 356666666666666666666655432 23445666666666666666666666555543 345
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHH
Q 006054 204 NAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAH 283 (663)
Q Consensus 204 ~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~ 283 (663)
..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++. |++++.+|.+|.||||+|+.
T Consensus 65 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A~~ 142 (153)
T 1awc_B 65 KVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKY--GADVHTQSKFCKTAFDISID 142 (153)
T ss_dssp TTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHH
T ss_pred CCCCCHHHHHHHcChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccCCCCCCHHHHHHH
Confidence 5566666666666666666666666666655555666666666666666666666655 45555555556666666666
Q ss_pred cCCHHHHHHH
Q 006054 284 LGYYNVVKEL 293 (663)
Q Consensus 284 ~g~~~iv~~L 293 (663)
.|+.+++++|
T Consensus 143 ~~~~~i~~~L 152 (153)
T 1awc_B 143 NGNEDLAEIL 152 (153)
T ss_dssp TTCHHHHHHH
T ss_pred cCCHHHHHHh
Confidence 6665555554
No 70
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.92 E-value=1.7e-27 Score=249.14 Aligned_cols=245 Identities=12% Similarity=-0.038 Sum_probs=176.8
Q ss_pred CcHHHHHHH-hccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCC--C
Q 006054 124 ETLLHIAAR-HGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLP--Y 200 (663)
Q Consensus 124 ~T~Lh~A~~-~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~--~ 200 (663)
.+++++|.. .++.++++++++.+.+ ++||||+|++.|+.+++++|++.++... .
T Consensus 66 ll~~~~a~~~~~~~~~~~~l~~~g~~-----------------------~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~ 122 (376)
T 2aja_A 66 LLCLYYAHYNRNAKQLWSDAHKKGIK-----------------------SEVICFVAAITGCSSALDTLCLLLTSDEIVK 122 (376)
T ss_dssp HHHHHHHHTTTTCTTHHHHHHHHTCC-----------------------HHHHHHHHHHHCCHHHHHHHTTC--CCSSCC
T ss_pred HHHHHHHHhcCCCHHHHHHHHHcCCC-----------------------cCCHHHHHHHcCCHHHHHHHHHcCCcHHHHH
Confidence 346677665 4667788888776543 4599999999999999999999876321 1
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCC---CCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCc--CCCCCC
Q 006054 201 DANNAGETPLYVAAERGYKDVTQDILLTCKSP---ADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSK--ADQQGW 275 (663)
Q Consensus 201 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~---~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~--~d~~g~ 275 (663)
..+..|.||||+|+..|+.+++++|+++|+++ +..+.+ .||||.|+..|+.+++++|+++ |++++. .|.+|.
T Consensus 123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~--ga~~~~~~~d~~g~ 199 (376)
T 2aja_A 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCEL--APTEATAMIQAENY 199 (376)
T ss_dssp --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHS--CGGGHHHHHHHHHH
T ss_pred HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHc--CCccchhccCCCCC
Confidence 23456788999999999999999999999752 222223 8999999999999999999998 677666 788899
Q ss_pred hHHHHHH-HcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCC
Q 006054 276 LPLHLAA-HLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGS 354 (663)
Q Consensus 276 tpLh~A~-~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~ 354 (663)
||||+|+ ..|+.+++++|++.+. .|.||||+|+.+|+.+++++|++.+.+. +.. .++++.|+.+|+
T Consensus 200 TpL~~Aa~~~G~~eiv~~Ll~~ga--------~~~taL~~Aa~~g~~evv~lL~~~ga~~-~~~----~~~l~~A~~~g~ 266 (376)
T 2aja_A 200 YAFRWAAVGRGHHNVINFLLDCPV--------MLAYAEIHEFEYGEKYVNPFIARHVNRL-KEM----HDAFKLSNPDGV 266 (376)
T ss_dssp HHHHHHHSTTCCHHHHHHHTTSHH--------HHHHHHHCTTTTTTTTHHHHHHHHHHHH-HHH----HTTTTTTSSSSC
T ss_pred CHHHHHHHHCCCHHHHHHHHhCCC--------ccchHHHHHHHCCCHHHHHHHHhcCccc-ccc----cHHHHHHHHCCC
Confidence 9999999 9999999999998653 2789999999999999999999887543 222 246777887777
Q ss_pred HHH------------HHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCC-cccccccccCcCccccccCCCChHHHHhhcc
Q 006054 355 RRT------------IELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGS-LIPSFVCHPKVDRLAFNQNNCSAEDIIRSDK 421 (663)
Q Consensus 355 ~~i------------v~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~-~~~~lL~~~~ad~~~~n~~g~t~l~ia~~~~ 421 (663)
.++ ++.|+.. + +.+.+..+..... ..++.+.+.|++++ .+.||+++|...+
T Consensus 267 ~~vv~~~~~~~~~~~~~~li~~---~---------~~~~~~~~~~Ll~~~~vk~l~~~g~~~n----~~~~~L~~A~~~g 330 (376)
T 2aja_A 267 FDLVTKSECLQGFYMLRNLIRR---N---------DEVLLDDIRFLLSIPGIKALAPTATIPG----DANELLRLALRLG 330 (376)
T ss_dssp CCCSSHHHHHHHHHHHHHHHHH---C---------CGGGHHHHHHHHTSTTTGGGSSCCSSTT----CCCHHHHHHHHHT
T ss_pred hhhhcHHhhhhhHHHHHHHHHc---c---------hhhHHHHHHHHHhChhhhhhhccCCCCC----CccHHHHHHHHcC
Confidence 663 3445544 1 1122222222111 22356677777765 4558999998865
Q ss_pred cc
Q 006054 422 LL 423 (663)
Q Consensus 422 ~~ 423 (663)
..
T Consensus 331 ~~ 332 (376)
T 2aja_A 331 NQ 332 (376)
T ss_dssp CT
T ss_pred cH
Confidence 54
No 71
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.92 E-value=6.3e-26 Score=223.65 Aligned_cols=206 Identities=13% Similarity=0.143 Sum_probs=128.6
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHH
Q 006054 204 NAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAH 283 (663)
Q Consensus 204 ~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~ 283 (663)
..|.||||.|+..++.+.++.|+++|++++. ++.|.||||.|+..|+.++++.|++. |.+++.+|.+|.||||+|+.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~ 79 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE--VDDPSLPNDEGITALHNAVC 79 (239)
T ss_dssp -----------------------------------CHHHHHHHHHHTCHHHHHHHTST--TSSCCCCCTTSCCHHHHHHH
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHH
Confidence 3577777777777777777777777777664 35677888888888888888888877 66777788888888888888
Q ss_pred cCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCC-cHHHHH--HHcCCHHHHHH
Q 006054 284 LGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGW-NVFHFA--LQSGSRRTIEL 360 (663)
Q Consensus 284 ~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~-t~Lh~A--v~~~~~~iv~~ 360 (663)
.|+.+++++|++++.++ +..|..|.||||+|+..|+.++++.|++.+++. +..+..|. ||||+| +..|+.+++++
T Consensus 80 ~g~~~~v~~Ll~~ga~~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~~~~t~l~~a~~~~~g~~~~~~~ 157 (239)
T 1ycs_B 80 AGHTEIVKFLVQFGVNV-NAADSDGWTPLHCAASCNNVQVCKFLVESGAAV-FAMTYSDMQTAADKCEEMEEGYTQCSQF 157 (239)
T ss_dssp HTCHHHHHHHHHHTCCT-TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCSSSCCCHHHHCCSSSTTCCCHHHH
T ss_pred cCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-ceecCCCCcchHHHHHHhhhccHHHHHH
Confidence 88888888888887776 666778888888888888888888888887665 45555555 888888 77788888888
Q ss_pred HHhCCCCCCCCCCC---------CCCCCcHHHHHHhCCCcccccccccCcC------ccccccCCCChHHHHh
Q 006054 361 LLKSPSLGNLVNEK---------NDDGNTPLLEHAGSGSLIPSFVCHPKVD------RLAFNQNNCSAEDIIR 418 (663)
Q Consensus 361 Ll~~~~~~~~in~~---------d~~G~TpLhlA~~~~~~~~~lL~~~~ad------~~~~n~~g~t~l~ia~ 418 (663)
|++. +++++.. |..|.|+++++...|.. ...+.+.+.+ ....++.|.+|.+++.
T Consensus 158 Ll~~---~a~~~~~~~~~~~al~d~~~~~~~eLa~~~G~~-i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~ 226 (239)
T 1ycs_B 158 LYGV---QEKMGIMNKGVIYALWDYEPQNDDELPMKEGDC-MTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 226 (239)
T ss_dssp HHHH---HHHTTTTGGGEEEESSCBCCSSTTBCCBCSSCE-EEECCCCTTSCSSEEEEEETTEEEEEEGGGEE
T ss_pred HHHh---hhcccccccceEEEEeccCCCCCCcccccCCCE-EEEEEecCCCCCCEEEEEECCcEEEeehHHee
Confidence 8877 6666554 66788999888887763 2444444433 2456667777776654
No 72
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.92 E-value=3.9e-24 Score=195.20 Aligned_cols=150 Identities=26% Similarity=0.299 Sum_probs=106.1
Q ss_pred ChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCH
Q 006054 173 DTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDT 252 (663)
Q Consensus 173 ~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~ 252 (663)
.|+||.|++.|+.+++++|++.+++.. .+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||.|+..++.
T Consensus 3 ~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~ 80 (153)
T 1awc_B 3 GKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHA 80 (153)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCH
T ss_pred cHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcChH
Confidence 467777777777777777777776543 466677777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHH
Q 006054 253 EMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327 (663)
Q Consensus 253 ~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L 327 (663)
+++++|++. |.+++.+|.+|.||||+|+..|+.+++++|++++.+. +..|..|.||+|+|+..|+.+++++|
T Consensus 81 ~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~i~~~L 152 (153)
T 1awc_B 81 NIVEVLLKH--GADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADV-HTQSKFCKTAFDISIDNGNEDLAEIL 152 (153)
T ss_dssp HHHHHHHTT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHc--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCc-cccCCCCCCHHHHHHHcCCHHHHHHh
Confidence 777777766 5666677777777777777777777777777766655 45566666666666666666666554
No 73
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=1.3e-24 Score=201.14 Aligned_cols=160 Identities=27% Similarity=0.309 Sum_probs=130.3
Q ss_pred CCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 006054 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAA 247 (663)
Q Consensus 168 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~ 247 (663)
.|..|.||||.|++.|+.++++.|++.++......+..|.||||+|+..|+.+++++|+++|.+++..+..|.||||.|+
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~ 83 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNAC 83 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHHHHH
Confidence 56678899999999999999999998766555567777889999999999999999999988888888888888888888
Q ss_pred hcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHH
Q 006054 248 FRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327 (663)
Q Consensus 248 ~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L 327 (663)
..++.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|++++.+. +..|.+|.||+|+|+. |+.+++++|
T Consensus 84 ~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~a~~-~~~~i~~~L 159 (165)
T 3twr_A 84 SYGHYEVAELLVKH--GAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADP-TKKNRDGNTPLDLVKD-GDTDIQDLL 159 (165)
T ss_dssp HTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCTGGGSCT-TCHHHHHHH
T ss_pred HcCcHHHHHHHHhC--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-cccCCCCCChhHhHhc-CChHHHHHH
Confidence 88888888888887 7788888888888888888888888888888887766 5667777888877655 777777777
Q ss_pred HHcC
Q 006054 328 IMSC 331 (663)
Q Consensus 328 l~~~ 331 (663)
++.+
T Consensus 160 ~~~g 163 (165)
T 3twr_A 160 RGDA 163 (165)
T ss_dssp HTC-
T ss_pred hhcc
Confidence 7654
No 74
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.92 E-value=5.8e-26 Score=222.10 Aligned_cols=195 Identities=19% Similarity=0.188 Sum_probs=164.5
Q ss_pred HHHHHHcCCCCC--CCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCC
Q 006054 188 VKMLTKEDPSLP--YDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGT 265 (663)
Q Consensus 188 v~~Ll~~~~~~~--~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~ 265 (663)
++.|++.+.+.. ...+..+.||||.|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|++. |+
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~--ga 78 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA--GA 78 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TC
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHC--CC
Confidence 356777765543 34556778899999999999999999999999999999999999999999999999999998 89
Q ss_pred CCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHH--HhcCCHHHHHHHHHcCCCCcccccCCCC
Q 006054 266 QTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLA--AGKGRLNTVQELIMSCPSSCELVDDRGW 343 (663)
Q Consensus 266 ~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~A--a~~g~~~~v~~Ll~~~~~~~~~~d~~g~ 343 (663)
+++.+|.+|.||||+|+..|+.+++++|++.+++.....+.+|.||||+| +..|+.++++.|++.+++. +..|..|.
T Consensus 79 ~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~-~~~~~~~~ 157 (229)
T 2vge_A 79 NVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSM-GLMNSGAV 157 (229)
T ss_dssp CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHT-TTSGGGEE
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCc-ccccCCch
Confidence 99999999999999999999999999999999988444457999999999 9999999999999998765 67788999
Q ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCCCCcHHHHHHhCCCc
Q 006054 344 NVFHFALQSGSRRTIELLLKSPSLGNL--VNEKNDDGNTPLLEHAGSGSL 391 (663)
Q Consensus 344 t~Lh~Av~~~~~~iv~~Ll~~~~~~~~--in~~d~~G~TpLhlA~~~~~~ 391 (663)
|++|.++..+.. ++|++. |++ ++.+|.+|+||||+|+..|+.
T Consensus 158 ~~l~~~~~~~~~---~~ll~~---ga~~~~~~~d~~G~TpL~~A~~~g~~ 201 (229)
T 2vge_A 158 YALWDYSAEFGD---ELSFRE---GESVTVLRRDGPEETDWWWAALHGQE 201 (229)
T ss_dssp EESSCBCCSSTT---BCCBCT---TCEEEEEESSCTTCSSEEEEEETTEE
T ss_pred HHHHHHhhcccc---ccCccc---cccccccccCCCcccHHHHHHHcCCc
Confidence 999966555433 566766 666 889999999999999999854
No 75
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=6.9e-24 Score=194.14 Aligned_cols=153 Identities=28% Similarity=0.337 Sum_probs=86.2
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Q 006054 172 KDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRND 251 (663)
Q Consensus 172 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 251 (663)
+.||||.|+..|+.++++.|++..+......+..|.||||+ +..|+.+++++|+++|++++..+..|.||||.|+..|+
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~ 80 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGF 80 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCc
Confidence 34566666666666666666665222233455556666666 55666666666666666666555566666666666666
Q ss_pred HHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHH
Q 006054 252 TEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329 (663)
Q Consensus 252 ~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~ 329 (663)
.+++++|++. |.+++.+|.+|.||||+|+..|+.+++++|++. .+. +..|.+|.||||+|+..|+.++++.|++
T Consensus 81 ~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~-~~~~~~g~t~l~~A~~~~~~~~v~~Ll~ 154 (156)
T 1bd8_A 81 LDTLKVLVEH--GADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDL-HRRDARGLTPLELALQRGAQDLVDILQG 154 (156)
T ss_dssp HHHHHHHHHT--TCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCT-TCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred HHHHHHHHHc--CCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence 6666666655 455555555555555555555555555555555 332 3444455555555555555555554443
No 76
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.91 E-value=4.4e-24 Score=200.40 Aligned_cols=161 Identities=19% Similarity=0.212 Sum_probs=70.1
Q ss_pred cHHHHHHHcCCHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCC
Q 006054 208 TPLYVAAERGYKDVTQDILLT-CKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGY 286 (663)
Q Consensus 208 tpL~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~ 286 (663)
+||+.|+..|+.+++++|++. +.+++..+..|.||||.|+..++.+++++|++. |.+++.+|.+|.||||+|+..|+
T Consensus 7 ~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~~~ 84 (179)
T 3f6q_A 7 DDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR--GARINVMNRGDDTPLHLAASHGH 84 (179)
T ss_dssp CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCC
Confidence 344444444444444444443 223333344444444444444444444444443 33444444444444444444444
Q ss_pred HHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 006054 287 YNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPS 366 (663)
Q Consensus 287 ~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~ 366 (663)
.+++++|++++.+. +..|..|.||||+|+..|+.++++.|++.+.+. +..|..|+||||+|+..++.+++++|++.
T Consensus 85 ~~~v~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~~-- 160 (179)
T 3f6q_A 85 RDIVQKLLQYKADI-NAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEKM-- 160 (179)
T ss_dssp HHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHHh--
Confidence 44444444444333 333444444444444444444444444443332 33444455555555555555555555544
Q ss_pred CCCCCCCCC
Q 006054 367 LGNLVNEKN 375 (663)
Q Consensus 367 ~~~~in~~d 375 (663)
|++++..+
T Consensus 161 -g~~~~~~~ 168 (179)
T 3f6q_A 161 -GQNLNRIP 168 (179)
T ss_dssp -TCCCSCBC
T ss_pred -hcCcccCC
Confidence 44444443
No 77
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.91 E-value=7.5e-24 Score=193.90 Aligned_cols=153 Identities=27% Similarity=0.395 Sum_probs=140.5
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHh-CCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHc
Q 006054 206 GETPLYVAAERGYKDVTQDILLT-CKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHL 284 (663)
Q Consensus 206 g~tpL~~A~~~g~~eiv~~Ll~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~ 284 (663)
+.|||+.|+..|+.+++++|++. +.+++..+..|.||||. +..|+.+++++|++. |.+++.+|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~~ 78 (156)
T 1bd8_A 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQ--GASPNVQDTSGTSPVHDAART 78 (156)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHT
T ss_pred cchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHC--CCCCCCcCCCCCCHHHHHHHc
Confidence 56899999999999999999998 34888899999999999 999999999999998 789999999999999999999
Q ss_pred CCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 285 GYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 285 g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
|+.+++++|++++.+. +..|.+|.||||+|+..|+.+++++|++. ..++..|..|+||||+|+.+++.+++++|+++
T Consensus 79 ~~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 79 GFLDTLKVLVEHGADV-NVPDGTGALPIHLAVQEGHTAVVSFLAAE--SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp TCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHHTCHHHHHHHHTT--SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred CcHHHHHHHHHcCCCC-CCcCCCCCcHHHHHHHhChHHHHHHHHhc--cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 9999999999999877 67788999999999999999999999988 44578899999999999999999999999875
No 78
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.91 E-value=3.2e-24 Score=198.45 Aligned_cols=161 Identities=25% Similarity=0.306 Sum_probs=144.1
Q ss_pred cCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 006054 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSL 198 (663)
Q Consensus 119 ~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 198 (663)
.|.+|.||||.|++.|+.++++.|++.+.... ...+..|.||||+|+..|+.+++++|++.+.++
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~---------------~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~ 68 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNC---------------RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADV 68 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTC---------------CCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCc---------------cccccCCCCHHHHHHHcChHHHHHHHHhcCCCC
Confidence 36678899999999999999999998643211 136777899999999999999999999999886
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHH
Q 006054 199 PYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278 (663)
Q Consensus 199 ~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpL 278 (663)
. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..++.+++++|++. |.+++.+|.+|.|||
T Consensus 69 ~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t~l 145 (165)
T 3twr_A 69 H-AKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH--GADPTKKNRDGNTPL 145 (165)
T ss_dssp T-CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCTG
T ss_pred C-ccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCcccCCCCCChh
Confidence 5 6788999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred HHHHHcCCHHHHHHHHhcCc
Q 006054 279 HLAAHLGYYNVVKELLKADK 298 (663)
Q Consensus 279 h~A~~~g~~~iv~~Ll~~~~ 298 (663)
|+|+. ++.+++++|+++++
T Consensus 146 ~~a~~-~~~~i~~~L~~~gA 164 (165)
T 3twr_A 146 DLVKD-GDTDIQDLLRGDAA 164 (165)
T ss_dssp GGSCT-TCHHHHHHHHTC--
T ss_pred HhHhc-CChHHHHHHhhccc
Confidence 99877 99999999998764
No 79
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.91 E-value=8.4e-24 Score=198.50 Aligned_cols=163 Identities=17% Similarity=0.176 Sum_probs=151.5
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhc
Q 006054 170 EAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFR 249 (663)
Q Consensus 170 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~ 249 (663)
.++.++||.|+..|+.++++.|++.++......+..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH 82 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc
Confidence 34679999999999999999999997766678899999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHH
Q 006054 250 NDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIM 329 (663)
Q Consensus 250 ~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~ 329 (663)
++.+++++|++. |.+++..|.+|.||||+|+..|+.+++++|++++.+. +..|..|.||+|+|+..++.++++.|++
T Consensus 83 ~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~~~~L~~ 159 (179)
T 3f6q_A 83 GHRDIVQKLLQY--KADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALV-SICNKYGEMPVDKAKAPLRELLRERAEK 159 (179)
T ss_dssp TCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCS-SBCCTTSCCGGGGSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCc-chhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999999999 8899999999999999999999999999999999887 7789999999999999999999999999
Q ss_pred cCCCCc
Q 006054 330 SCPSSC 335 (663)
Q Consensus 330 ~~~~~~ 335 (663)
.+.+..
T Consensus 160 ~g~~~~ 165 (179)
T 3f6q_A 160 MGQNLN 165 (179)
T ss_dssp TTCCCS
T ss_pred hhcCcc
Confidence 987763
No 80
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.89 E-value=4.8e-24 Score=210.18 Aligned_cols=160 Identities=19% Similarity=0.159 Sum_probs=93.9
Q ss_pred CCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCC
Q 006054 121 TKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPY 200 (663)
Q Consensus 121 ~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~ 200 (663)
..|.||||.|++.|+.+.++.|+++|++.+. +..|.||||.|+..|+.++++.|++.++++.
T Consensus 3 ~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-----------------~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~- 64 (239)
T 1ycs_B 3 ITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-----------------NPLPLALLLDSSLEGEFDLVQRIIYEVDDPS- 64 (239)
T ss_dssp ---------------------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSSCC-
T ss_pred ccccccCchhhhhhhHHHHHHHhccCCCccc-----------------CchhhHHHHHHHHcCCHHHHHHHHHcCCCCC-
Confidence 4577888888888888888888887776542 2456778888888888888888877777543
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCC-hHHH
Q 006054 201 DANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGW-LPLH 279 (663)
Q Consensus 201 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~-tpLh 279 (663)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+..|+.+++++|++. |++++..+..|. ||||
T Consensus 65 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~~~~t~l~ 142 (239)
T 1ycs_B 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES--GAAVFAMTYSDMQTAAD 142 (239)
T ss_dssp CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCSSSCCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCcceecCCCCcchHH
Confidence 5667777777777777777777777777777777777777777777777777777777777 667777766665 7777
Q ss_pred HH--HHcCCHHHHHHHHhcCccc
Q 006054 280 LA--AHLGYYNVVKELLKADKSA 300 (663)
Q Consensus 280 ~A--~~~g~~~iv~~Ll~~~~~~ 300 (663)
+| +..|+.+++++|++.+++.
T Consensus 143 ~a~~~~~g~~~~~~~Ll~~~a~~ 165 (239)
T 1ycs_B 143 KCEEMEEGYTQCSQFLYGVQEKM 165 (239)
T ss_dssp HCCSSSTTCCCHHHHHHHHHHHT
T ss_pred HHHHhhhccHHHHHHHHHhhhcc
Confidence 77 6667777777777766554
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.86 E-value=6.2e-22 Score=181.21 Aligned_cols=141 Identities=22% Similarity=0.211 Sum_probs=76.3
Q ss_pred CCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCCh-HHHH
Q 006054 236 GPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKI-PLHL 314 (663)
Q Consensus 236 ~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~t-pLh~ 314 (663)
+..|.||||.|+..|+.+++++|++. |.+++..|..|.||||+|+ .|+.+++++|++++.+. +..|..|.| |||+
T Consensus 9 ~~~~~t~L~~A~~~g~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~-~~~d~~g~ttpL~~ 84 (156)
T 1bi7_B 9 MEPSADWLATAAARGRVEEVRALLEA--GANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEP-NCADPATLTRPVHD 84 (156)
T ss_dssp -CCSTTHHHHHHHHTCHHHHHHHHTT--TCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHH
T ss_pred CccchHHHHHHHHcCCHHHHHHHHHc--CCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCC-CCcCCCCCcHHHHH
Confidence 34455555555555555555555555 4555555555666666553 55566666666655544 445555665 6666
Q ss_pred HHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHH
Q 006054 315 AAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLE 384 (663)
Q Consensus 315 Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhl 384 (663)
|+..|+.++++.|++.+.+. +..|..|+||||+|+.+++.+++++|+++ |++++.+|..|+||.+-
T Consensus 85 A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~~~~ 150 (156)
T 1bi7_B 85 AAREGFLDTLVVLHRAGARL-DVRDAWGRLPVDLAEELGHRDVARYLRAA---AGGTRGSNHARIDAAEG 150 (156)
T ss_dssp HHHHTCHHHHHHHHHHTCCS-SCCCTTCCCHHHHHHHHTCHHHHHHHSSC---C----------------
T ss_pred HHHCCCHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHhCHHHHHHHHHHc---CCCCCccCcCcCccccc
Confidence 66666666666666665443 55667777777777777777777777776 77777777777777653
No 82
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.86 E-value=1.2e-21 Score=179.23 Aligned_cols=143 Identities=16% Similarity=0.144 Sum_probs=96.6
Q ss_pred ccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCC
Q 006054 118 KTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPS 197 (663)
Q Consensus 118 ~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~ 197 (663)
..+..|.||||+|+..|+.++|++|++.|.+++. ++..|.||||+|+ .|+.+++++|++.+.+
T Consensus 7 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~ 69 (156)
T 1bi7_B 7 SSMEPSADWLATAAARGRVEEVRALLEAGANPNA----------------PNSYGRRPIQVMM-MGSARVAELLLLHGAE 69 (156)
T ss_dssp ---CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC----------------CCSSSCCTTTSSC-TTCHHHHHHHHTTTCC
T ss_pred CCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC----------------CCCCCCCHHHHHH-cCCHHHHHHHHHcCCC
Confidence 4566778888888888888888888888776654 5667788888874 7788888888887776
Q ss_pred CCCCCCCCCCc-HHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCCh
Q 006054 198 LPYDANNAGET-PLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWL 276 (663)
Q Consensus 198 ~~~~~~~~g~t-pL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~t 276 (663)
+. ..+..|.| |||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.+++++|++. |++++.++..|.|
T Consensus 70 ~~-~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~--ga~~~~~~~~g~t 146 (156)
T 1bi7_B 70 PN-CADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA--AGGTRGSNHARID 146 (156)
T ss_dssp CC-CCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSC--C------------
T ss_pred CC-CcCCCCCcHHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHc--CCCCCccCcCcCc
Confidence 54 56667777 88888888888888888888887777777788888888888888888888777 6777777777777
Q ss_pred HHHH
Q 006054 277 PLHL 280 (663)
Q Consensus 277 pLh~ 280 (663)
|.+.
T Consensus 147 ~~~~ 150 (156)
T 1bi7_B 147 AAEG 150 (156)
T ss_dssp ----
T ss_pred cccc
Confidence 7653
No 83
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.85 E-value=2.6e-21 Score=172.66 Aligned_cols=128 Identities=24% Similarity=0.264 Sum_probs=57.6
Q ss_pred CCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCC-CCh
Q 006054 232 PADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNE-GKI 310 (663)
Q Consensus 232 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~-g~t 310 (663)
++..+..|.||||.|+..|+.+++++|++. |.+++.+|..|.||||+|+. |+.+++++|++++.++ +..|.. |.|
T Consensus 5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~-~~~~~~~g~t 80 (136)
T 1d9s_A 5 IHMLGGSSDAGLATAAARGQVETVRQLLEA--GADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEP-NCADPATLTR 80 (136)
T ss_dssp CSCCCCCCSCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCS-SCCBTTTTBC
T ss_pred ccCCCCCCccHHHHHHHcCCHHHHHHHHHc--CCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCC-CCcCCCCCCC
Confidence 333444444444444444444444444444 34444444444444444444 4444444444444433 233333 444
Q ss_pred HHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 311 PLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 311 pLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
|||+|+..|+.++++.|++.+.+. +..|..|+||||+|+.+++.+++++|+++
T Consensus 81 ~L~~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ 133 (136)
T 1d9s_A 81 PVHDAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAA 133 (136)
T ss_dssp HHHHHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 444444444444444444444332 33444444455555444444444444443
No 84
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.85 E-value=4.9e-21 Score=170.82 Aligned_cols=127 Identities=22% Similarity=0.326 Sum_probs=73.4
Q ss_pred CCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCC-CChHHH
Q 006054 201 DANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQ-GWLPLH 279 (663)
Q Consensus 201 ~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~-g~tpLh 279 (663)
..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+. ++.+++++|++. |.+++.+|.. |.||||
T Consensus 7 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~--g~~~~~~~~~~g~t~L~ 83 (136)
T 1d9s_A 7 MLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLH--GAEPNCADPATLTRPVH 83 (136)
T ss_dssp CCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHH--TCCSSCCBTTTTBCHHH
T ss_pred CCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHC--CCCCCCcCCCCCCCHHH
Confidence 344555555555555555555555555555555555555556655555 555555555555 4555555555 556666
Q ss_pred HHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcC
Q 006054 280 LAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSC 331 (663)
Q Consensus 280 ~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~ 331 (663)
+|+..|+.+++++|++++++. +..|..|.||||+|+..|+.+++++|++++
T Consensus 84 ~A~~~~~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~G 134 (136)
T 1d9s_A 84 DAAREGFLDTLVVLHRAGARL-DVCDAWGRLPVDLAEEQGHRDIARYLHAAT 134 (136)
T ss_dssp HHHHHTCHHHHHHHHHTCCCC-CCCSSSSSCHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCC-CccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 666666666666666555554 444555566666666666666666555544
No 85
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.85 E-value=1.9e-21 Score=183.17 Aligned_cols=154 Identities=14% Similarity=0.075 Sum_probs=107.3
Q ss_pred CCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCC-cCCChHHHHHHHcCCH----HHHHHHHHcCCC
Q 006054 123 GETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTN-EAKDTALHEAARYNQI----DVVKMLTKEDPS 197 (663)
Q Consensus 123 g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~-~~g~t~L~~A~~~g~~----~iv~~Ll~~~~~ 197 (663)
+.++|+.|++.|+.+.++.+++.+.+ . .+ ..|.||||+|+..|+. +++++|++.|++
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~--~----------------~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad 67 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYE--D----------------KESVLKSNILYDVLRNNNDEARYKISMFLINKGAD 67 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSS--C----------------HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCcc--c----------------ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC
Confidence 34677888888888877777766532 1 22 4577788888777764 477777777777
Q ss_pred CCCCCCCCCCcHHHHHHHcCC------HHHHHHHHHhCCCCCCCCCCCC-CHHHHHHhcC-----CHHHHHHHHh-cccC
Q 006054 198 LPYDANNAGETPLYVAAERGY------KDVTQDILLTCKSPADHGPMGR-TALHAAAFRN-----DTEMTKVLLD-SSIG 264 (663)
Q Consensus 198 ~~~~~~~~g~tpL~~A~~~g~------~eiv~~Ll~~~~~~~~~~~~g~-t~L~~A~~~~-----~~~~v~~Ll~-~~~g 264 (663)
++ .++..|.||||+|+..++ .+++++|+++|++++.+|..|. ||||+|+..+ ..+++++|++ . |
T Consensus 68 vn-~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~--g 144 (186)
T 3t8k_A 68 IK-SRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQS--G 144 (186)
T ss_dssp SS-CCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTST--T
T ss_pred CC-CCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhc--C
Confidence 55 556777777777777765 4667777777777777777777 7777777633 2456777776 5 6
Q ss_pred CCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 006054 265 TQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297 (663)
Q Consensus 265 ~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~ 297 (663)
++++.+|..|.||||+|++.|+.+++++|.+..
T Consensus 145 ad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~ 177 (186)
T 3t8k_A 145 LQLLIKDKWGLTALEFVKRCQKPIALKMMEDYI 177 (186)
T ss_dssp CCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777777777777777777776643
No 86
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.84 E-value=1.6e-21 Score=183.61 Aligned_cols=153 Identities=10% Similarity=0.033 Sum_probs=105.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCH----HHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 006054 172 KDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYK----DVTQDILLTCKSPADHGPMGRTALHAAA 247 (663)
Q Consensus 172 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~----eiv~~Ll~~~~~~~~~~~~g~t~L~~A~ 247 (663)
+.++|+.|++.|+.+.++.+++.+.+. ..+..|.||||+|+..++. +++++|+++|++++.++..|+||||+|+
T Consensus 6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~--~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~ 83 (186)
T 3t8k_A 6 EYRTVSAAAMLGTYEDFLELFEKGYED--KESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLF 83 (186)
T ss_dssp HCSSHHHHHHHSCHHHHHHHHHHSSSC--HHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHH
T ss_pred cccHHHHHHHcCCHHHHHHHHhcCccc--ccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Confidence 457788888888888888888776542 2225688888888888764 4788888888888888888888888888
Q ss_pred hcCC------HHHHHHHHhcccCCCCCcCCCCCC-hHHHHHHHcCC-----HHHHHHHHh-cCccccccCCCCCChHHHH
Q 006054 248 FRND------TEMTKVLLDSSIGTQTSKADQQGW-LPLHLAAHLGY-----YNVVKELLK-ADKSAAYKADNEGKIPLHL 314 (663)
Q Consensus 248 ~~~~------~~~v~~Ll~~~~g~~~~~~d~~g~-tpLh~A~~~g~-----~~iv~~Ll~-~~~~~~~~~~~~g~tpLh~ 314 (663)
..++ .+++++|+++ |++++.+|.+|. ||||+|+..+. .+++++|++ +++++ +.+|..|.||||+
T Consensus 84 ~~~~~~~~~~~~iv~~Ll~~--Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~-~~~d~~G~TpL~~ 160 (186)
T 3t8k_A 84 QGGGNDITGTTELCKIFLEK--GADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEF 160 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHT--TCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCT-TCCCTTSCCHHHH
T ss_pred HcCCcchhhHHHHHHHHHHC--CCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCC-cccCCCCCCHHHH
Confidence 7765 4677777777 777777777777 77777776432 345555555 55554 4455555555555
Q ss_pred HHhcCCHHHHHHHHH
Q 006054 315 AAGKGRLNTVQELIM 329 (663)
Q Consensus 315 Aa~~g~~~~v~~Ll~ 329 (663)
|++.|+.++++.|.+
T Consensus 161 A~~~~~~~~v~~L~~ 175 (186)
T 3t8k_A 161 VKRCQKPIALKMMED 175 (186)
T ss_dssp HHTTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHH
Confidence 555555555555543
No 87
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.84 E-value=6.5e-20 Score=160.67 Aligned_cols=124 Identities=37% Similarity=0.505 Sum_probs=80.4
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Q 006054 172 KDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRND 251 (663)
Q Consensus 172 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~ 251 (663)
|.||||.|+..|+.+++++|++.++++. ..+..|.||||+|+..++.+++++|++.|.+++..+..|.||||.|+..++
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~ 80 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVN-AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGH 80 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCC-CcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCh
Confidence 5666666666666666666666665543 345566666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCc
Q 006054 252 TEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADK 298 (663)
Q Consensus 252 ~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~ 298 (663)
.+++++|++. |.+++.+|..|.||||+|+..|+.+++++|+++|+
T Consensus 81 ~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 81 LEVVKLLLEA--GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp HHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred HHHHHHHHHc--CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 6666666665 55666666666666666666666666666666554
No 88
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.83 E-value=6.6e-21 Score=188.16 Aligned_cols=171 Identities=18% Similarity=0.104 Sum_probs=134.3
Q ss_pred cCCCcceeeecccCCCCccccccccchhhhhhhccccccCCCcchhhhhhhhcChhhhhccCCCCCcHHHHHHHhccHHH
Q 006054 59 PNENTILHIHITARPNQTMKSNNKLKSSLWRMMSTFKKQSSSSEHFGRDILEMCPGLLLKTNTKGETLLHIAARHGHADV 138 (663)
Q Consensus 59 ~~g~t~Lh~A~~a~~g~~~~~~~~~~iv~~Ll~~~~~~~~~~~~~~g~~~~~~~~~ll~~~~~~g~T~Lh~A~~~g~~~i 138 (663)
..+.+++..+ +..|+ .+.+..+. . . ....+..|.||||+|++.|+.++
T Consensus 13 ~~~~~~~l~~--~~~g~-------~~~~~~~~-----------~--------~----~~~~~~~g~t~L~~A~~~g~~~~ 60 (244)
T 3ui2_A 13 GEGAMEYLIE--WKDGH-------SPSWVPSS-----------Y--------I----AADVVSEYETPWWTAARKADEQA 60 (244)
T ss_dssp TTTEEEEEEE--ESSCC-------CCEEEEGG-----------G--------S----CHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CCCccHHHHH--HHcCC-------Cccccccc-----------c--------c----ccccccCCCCHHHHHHHcCCHHH
Confidence 3566778888 88888 77666654 0 0 12234568899999999999999
Q ss_pred HHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCC
Q 006054 139 VKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGY 218 (663)
Q Consensus 139 v~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~ 218 (663)
++.|++ +.+++. +|..|.||||+|+..|+.+++++|++.+++++...+..|.||||+|+..|+
T Consensus 61 v~~Ll~-~~~~~~----------------~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~ 123 (244)
T 3ui2_A 61 LSQLLE-DRDVDA----------------VDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVR 123 (244)
T ss_dssp HHHTTT-TCCTTC----------------BCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTC
T ss_pred HHHHHc-CCCCCC----------------cCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCC
Confidence 999999 776654 777899999999999999999999999888765555778999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 006054 219 KDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297 (663)
Q Consensus 219 ~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~ 297 (663)
.+++++|+++|++++..+..|.||||+|+..++ ...+.||||+|+..|+.+++++|++..
T Consensus 124 ~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~-------------------~~~~~~~l~~a~~~g~~~iv~~L~~~~ 183 (244)
T 3ui2_A 124 PEVVEALVELGADIEVEDERGLTALELAREILK-------------------TTPKGNPMQFGRRIGLEKVINVLEGQV 183 (244)
T ss_dssp HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHT-------------------TCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHh-------------------ccCCCCHHHHHHHcChHHHHHHHHHhc
Confidence 999999999998888888888888888875211 134677888888888888877777743
No 89
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.83 E-value=7.8e-20 Score=160.16 Aligned_cols=124 Identities=39% Similarity=0.542 Sum_probs=80.8
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcC
Q 006054 206 GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLG 285 (663)
Q Consensus 206 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g 285 (663)
|.||||.|+..|+.+++++|+++|.+++..+..|.||||.|+..++.+++++|++. |.+++.+|..|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~l~~A~~~~ 79 (126)
T 1n0r_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNG 79 (126)
T ss_dssp CCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred CccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHc--CCCCcccCCCCCcHHHHHHHcC
Confidence 66677777777777777777777766666666666677766666666666666666 5566666666666666666666
Q ss_pred CHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCC
Q 006054 286 YYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCP 332 (663)
Q Consensus 286 ~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~ 332 (663)
+.+++++|++++.+. +..|..|.||+|+|+..|+.+++++|++++.
T Consensus 80 ~~~~~~~Ll~~g~~~-~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Ga 125 (126)
T 1n0r_A 80 HLEVVKLLLEAGADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125 (126)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC
T ss_pred hHHHHHHHHHcCCCC-cccCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence 666666666665554 4445556666666666666666666665543
No 90
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.83 E-value=3e-20 Score=165.63 Aligned_cols=120 Identities=27% Similarity=0.369 Sum_probs=49.6
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcC
Q 006054 206 GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLG 285 (663)
Q Consensus 206 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g 285 (663)
+.||||.|+..|+.+++++|+++|.+++..+..|.||||.|+..++.+++++|++. |.+++..|.+|.||||+|+..|
T Consensus 14 ~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~t~L~~A~~~~ 91 (136)
T 2jab_A 14 LGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADVNAVDAIGFTPLHLAAFIG 91 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHHHT
T ss_pred ccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHHHcC
Confidence 33444444444444444444444444444444444444444444444444444443 3344444444444444444444
Q ss_pred CHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHH
Q 006054 286 YYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELI 328 (663)
Q Consensus 286 ~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll 328 (663)
+.+++++|++++.+. +..|.+|.||||+|+..|+.++++.|+
T Consensus 92 ~~~~v~~Ll~~g~~~-~~~~~~g~tpl~~A~~~~~~~~~~~Ll 133 (136)
T 2jab_A 92 HLEIAEVLLKHGADV-NAQDKFGKTAFDISIGNGNEDLAEILQ 133 (136)
T ss_dssp CHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHcCCCC-cCcCCCCCCHHHHHHHCCCHHHHHHHH
Confidence 444444444443333 233333334444443333333333333
No 91
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.83 E-value=4.8e-20 Score=164.33 Aligned_cols=127 Identities=27% Similarity=0.362 Sum_probs=118.2
Q ss_pred CCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHH
Q 006054 168 TNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAA 247 (663)
Q Consensus 168 ~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~ 247 (663)
....+.||||+|+..|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||.|+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~ 88 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVN-AKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAA 88 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHH
Confidence 34557899999999999999999999998865 67889999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcC
Q 006054 248 FRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKAD 297 (663)
Q Consensus 248 ~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~ 297 (663)
..++.+++++|++. |.+++.+|.+|.||||+|+..|+.+++++|++.|
T Consensus 89 ~~~~~~~v~~Ll~~--g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 89 FIGHLEIAEVLLKH--GADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHc--CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999998 7899999999999999999999999999999864
No 92
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.83 E-value=7e-21 Score=179.19 Aligned_cols=142 Identities=21% Similarity=0.168 Sum_probs=120.9
Q ss_pred cCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCC
Q 006054 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSL 198 (663)
Q Consensus 119 ~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~ 198 (663)
.+..|.||||+|+..|+.++++.|++ +.+++. ++..|.||||+|+..|+.+++++|++.++++
T Consensus 40 ~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~----------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~ 102 (183)
T 3deo_A 40 VVSEYETPWWTAARKADEQALSQLLE-DRDVDA----------------VDENGRTALLFVAGLGSDKCVRLLAEAGADL 102 (183)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC----------------CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred CCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence 35678999999999999999999999 776654 6788999999999999999999999999887
Q ss_pred CCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHH
Q 006054 199 PYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278 (663)
Q Consensus 199 ~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpL 278 (663)
....+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++. ..+.+||
T Consensus 103 ~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~-------------------~~~~~~l 163 (183)
T 3deo_A 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKT-------------------TPKGNPM 163 (183)
T ss_dssp TCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHT-------------------CCCCSHH
T ss_pred CcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccC-------------------cccccHH
Confidence 655558899999999999999999999999999999999999999999864211 2356889
Q ss_pred HHHHHcCCHHHHHHHHhc
Q 006054 279 HLAAHLGYYNVVKELLKA 296 (663)
Q Consensus 279 h~A~~~g~~~iv~~Ll~~ 296 (663)
++|+..|..++++.|.++
T Consensus 164 ~~a~~~~~~~i~~~L~~~ 181 (183)
T 3deo_A 164 QFGRRIGLEKVINVLEGQ 181 (183)
T ss_dssp HHHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCHHHHHHHHHHh
Confidence 999999888888888764
No 93
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.82 E-value=2.5e-20 Score=166.35 Aligned_cols=128 Identities=23% Similarity=0.201 Sum_probs=98.6
Q ss_pred CCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCc
Q 006054 265 TQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWN 344 (663)
Q Consensus 265 ~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t 344 (663)
.++ .+|.+|.||||+|+..|+.+++++|++.+.+. +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|+|
T Consensus 2 ~d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~~~~g~t 78 (137)
T 3c5r_A 2 IDP-FTNHRGETLLHIASIKGDIPSVEYLLQNGSDP-NVKDHAGWTPLHEACNHGHLKVVELLLQHKALV-NTTGYQNDS 78 (137)
T ss_dssp --C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCS-CCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCGGGCC
T ss_pred CCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcc-cCcCCCCCC
Confidence 344 56777888888888888888888888877766 566778888888888888888888888876654 667888889
Q ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccc
Q 006054 345 VFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCH 398 (663)
Q Consensus 345 ~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~ 398 (663)
|||+|+.+++.+++++|++. |++++.+|..|+||||+|+..+.... .++.+
T Consensus 79 ~L~~A~~~~~~~~v~~Ll~~---ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~ 130 (137)
T 3c5r_A 79 PLHDAAKNGHVDIVKLLLSY---GASRNAVNIFGLRPVDYTDDESMKSLLLLPEK 130 (137)
T ss_dssp HHHHHHHTTCHHHHHHHHHT---TCCTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred HHHHHHHcCCHHHHHHHHHc---CCCCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence 99999999999999999988 88888899999999998887653333 44433
No 94
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=183.48 Aligned_cols=138 Identities=20% Similarity=0.124 Sum_probs=78.6
Q ss_pred hHHHHHHHcCCHHHHHHHHHcCCCCCCC-----CCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCCCCCCCHHHH
Q 006054 174 TALHEAARYNQIDVVKMLTKEDPSLPYD-----ANNAGETPLYVAAER---GYKDVTQDILLTCKSPADHGPMGRTALHA 245 (663)
Q Consensus 174 t~L~~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~ 245 (663)
++|+.|+..|+.+.++.|++.++++... .+..|.||||+|+.. ++.+++++|+++|++++..+.+|.||||+
T Consensus 153 ~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~ 232 (301)
T 2b0o_E 153 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHY 232 (301)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHH
T ss_pred HHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 4466666666666666666665554432 355566666666654 55666666666666666666666666666
Q ss_pred HHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCC
Q 006054 246 AAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGR 320 (663)
Q Consensus 246 A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~ 320 (663)
|+..|+.+++++|++. |++++.+|.+|.||||+|+..|+.+++++|++++++ .|.||||+|+..|+
T Consensus 233 A~~~g~~~~v~~Ll~~--gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 233 AALYNQPDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHTTCHHHHHHHHHT--TCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred HHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence 6666666666666665 556666666666666666666666666666655443 24556666555554
No 95
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.81 E-value=1e-19 Score=171.15 Aligned_cols=140 Identities=21% Similarity=0.205 Sum_probs=106.7
Q ss_pred CcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC-CCCCCHHHHHH
Q 006054 169 NEAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHG-PMGRTALHAAA 247 (663)
Q Consensus 169 ~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~-~~g~t~L~~A~ 247 (663)
+..|.||||.|+..|+.++++.|++ +.++. ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+
T Consensus 41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~ 118 (183)
T 3deo_A 41 VSEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAA 118 (183)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHTT-TSCTT-CCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHh-cCCCC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence 4567888888888888888888888 65543 567788888888888888888888888888887777 77888888888
Q ss_pred hcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHH
Q 006054 248 FRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQEL 327 (663)
Q Consensus 248 ~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~L 327 (663)
..++.+++++|++. |++++.+|.+|.||||+|++.++. ..+.+|+++|+..|+.++++.|
T Consensus 119 ~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~------------------~~~~~~l~~a~~~~~~~i~~~L 178 (183)
T 3deo_A 119 GYVRPEVVEALVEL--GADIEVEDERGLTALELAREILKT------------------TPKGNPMQFGRRIGLEKVINVL 178 (183)
T ss_dssp HTTCHHHHHHHHHH--TCCTTCCCTTSCCHHHHHHHHHHT------------------CCCCSHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHc--CCCCcCCCCCCCCHHHHHHHhccC------------------cccccHHHHHHHcCHHHHHHHH
Confidence 88888888888877 677788888888888888764321 2345677777777777777666
Q ss_pred HHc
Q 006054 328 IMS 330 (663)
Q Consensus 328 l~~ 330 (663)
.++
T Consensus 179 ~~~ 181 (183)
T 3deo_A 179 EGQ 181 (183)
T ss_dssp HTC
T ss_pred HHh
Confidence 543
No 96
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.80 E-value=1.8e-19 Score=177.89 Aligned_cols=110 Identities=24% Similarity=0.261 Sum_probs=79.2
Q ss_pred cCCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCC-CCCCCHHHHHHh
Q 006054 170 EAKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHG-PMGRTALHAAAF 248 (663)
Q Consensus 170 ~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~-~~g~t~L~~A~~ 248 (663)
..|.||||.|+..|+.++++.|++ +.+++ ..+..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||.|+.
T Consensus 43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~-~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~ 120 (244)
T 3ui2_A 43 SEYETPWWTAARKADEQALSQLLE-DRDVD-AVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG 120 (244)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHTTT-TCCTT-CBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred cCCCCHHHHHHHcCCHHHHHHHHc-CCCCC-CcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence 456777887777777777777777 55543 566677777777777777777777777777777666 567777777777
Q ss_pred cCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHH
Q 006054 249 RNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAH 283 (663)
Q Consensus 249 ~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~ 283 (663)
.|+.+++++|++. |++++.+|..|.||||+|+.
T Consensus 121 ~g~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~ 153 (244)
T 3ui2_A 121 YVRPEVVEALVEL--GADIEVEDERGLTALELARE 153 (244)
T ss_dssp TTCHHHHHHHHHT--TCCTTCCCTTCCCHHHHHHH
T ss_pred cCCHHHHHHHHHC--CCCCCCCCCCCCcHHHHHHH
Confidence 7777777777776 66677777777777777664
No 97
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.80 E-value=7.4e-20 Score=177.89 Aligned_cols=138 Identities=21% Similarity=0.218 Sum_probs=106.6
Q ss_pred hhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHc-
Q 006054 116 LLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKE- 194 (663)
Q Consensus 116 l~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~- 194 (663)
+...+..|.||||+|+..|+.++++.|++.|.+++. ++..|.||||+|+..|+.+++++|++.
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~----------------~~~~g~t~L~~A~~~~~~~~v~~Ll~~~ 129 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG----------------LDKAGSTALYWACHGGHKDIVEMLFTQP 129 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHTTST
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCCccc----------------cCCCCCCHHHHHHHcCCHHHHHHHHcCC
Confidence 455677889999999999999999999998887665 677889999999999999999999988
Q ss_pred CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCC
Q 006054 195 DPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQ 272 (663)
Q Consensus 195 ~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~ 272 (663)
+.++. ..+..|.||||+|+..|+.+++++|+++|++++..+..|.||||+|+..++.++++.|++. ++.....+.
T Consensus 130 g~~~~-~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~--~~~~~~~~~ 204 (222)
T 3ehr_A 130 NIELN-QQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT--DAVRTLSNA 204 (222)
T ss_dssp TCCCC-CCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred CCCcc-ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhcc--chhhhccch
Confidence 66654 6788888999999999999999999988888888888888888888888888888888877 455444443
No 98
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.79 E-value=9.8e-20 Score=162.52 Aligned_cols=120 Identities=25% Similarity=0.271 Sum_probs=56.7
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHH
Q 006054 202 ANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLA 281 (663)
Q Consensus 202 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A 281 (663)
++..|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++.+++++|++. |.+++.+|..|.||||+|
T Consensus 6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~--g~~~~~~~~~g~t~L~~A 83 (137)
T 3c5r_A 6 TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH--KALVNTTGYQNDSPLHDA 83 (137)
T ss_dssp CCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCGGGCCHHHHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc--CCcccCcCCCCCCHHHHH
Confidence 344444455555544445555544444444444444444455544444444444444444 344444444444444444
Q ss_pred HHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHH
Q 006054 282 AHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTV 324 (663)
Q Consensus 282 ~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v 324 (663)
+..|+.+++++|++++.+. +..|..|.||+|+|+..+..+++
T Consensus 84 ~~~~~~~~v~~Ll~~ga~~-~~~~~~g~tpl~~A~~~~~~~~l 125 (137)
T 3c5r_A 84 AKNGHVDIVKLLLSYGASR-NAVNIFGLRPVDYTDDESMKSLL 125 (137)
T ss_dssp HHTTCHHHHHHHHHTTCCT-TCCCTTSCCGGGGCCCHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCC-CCCCCCCCCHHHHHhhccHHHHH
Confidence 4444444444444444443 33444444444444444444433
No 99
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.78 E-value=1.3e-19 Score=176.12 Aligned_cols=137 Identities=19% Similarity=0.139 Sum_probs=94.0
Q ss_pred CCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHH
Q 006054 270 ADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFA 349 (663)
Q Consensus 270 ~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~A 349 (663)
.+.+|.||||+|+..|+.++++.|++.+.+. +..|..|.||||+|+..|+.++++.|++..+..++..|..|+||||+|
T Consensus 69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A 147 (222)
T 3ehr_A 69 QAESIDNPLHEAAKRGNLSWLRECLDNRVGV-NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA 147 (222)
T ss_dssp HEEEESCHHHHHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred cccccccccccccccCcHHHHHHHHhCCCCc-cccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence 3456777888888888888888888777665 566777888888888888888888888774555577788888888888
Q ss_pred HHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCCCccc-ccccccCcCccccccCC
Q 006054 350 LQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSGSLIP-SFVCHPKVDRLAFNQNN 410 (663)
Q Consensus 350 v~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~~~~~-~lL~~~~ad~~~~n~~g 410 (663)
+.+|+.+++++|+++ |++++.+|.+|+||||+|+..+.... +.|++.+++.+..|.+|
T Consensus 148 ~~~~~~~~v~~Ll~~---ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~ 206 (222)
T 3ehr_A 148 AWKGYADIVQLLLAK---GARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAED 206 (222)
T ss_dssp HHHTCHHHHHHHHHH---TCCSCCCCTTSCCHHHHCCSHHHHHHHC----------------
T ss_pred HHcCCHHHHHHHHHc---CCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhh
Confidence 888888888888887 78888888888888888887764433 77777887777776654
No 100
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.78 E-value=6.3e-19 Score=154.04 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=50.5
Q ss_pred CCChHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Q 006054 171 AKDTALHEAARYNQIDVVKMLTKEDPSLPYDANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRN 250 (663)
Q Consensus 171 ~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~ 250 (663)
.|.||||.|+..|+.+++++|++.++++. ..+..|.||||+|+..|+.+++++|++.|++++..+..|.||||+|+..+
T Consensus 6 ~~~~~l~~A~~~~~~~~v~~ll~~~~~~~-~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~ 84 (123)
T 3aaa_C 6 MCDKEFMWALKNGDLDEVKDYVAKGEDVN-RTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEG 84 (123)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTT-SCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred ccchHHHHHHHcCCHHHHHHHHHcCCCcC-ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcC
Confidence 34444555555555555544444444432 33444444444444444444444444444444444444444444444444
Q ss_pred CHHHHHHHHhcccCCCCCcCCCCCChHHHHH
Q 006054 251 DTEMTKVLLDSSIGTQTSKADQQGWLPLHLA 281 (663)
Q Consensus 251 ~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A 281 (663)
+.+++++|++. |.+++.+|.+|.||||+|
T Consensus 85 ~~~~v~~Ll~~--ga~~~~~~~~g~t~l~~A 113 (123)
T 3aaa_C 85 HVSCVKLLLSK--GADKTVKGPDGLTAFEAT 113 (123)
T ss_dssp CHHHHHHHHHT--TCCTTCCCTTSCCHHHHC
T ss_pred CHHHHHHHHHc--CCCCCCcCCCCCCHHHHh
Confidence 44444444444 344444444444444444
No 101
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.78 E-value=4.7e-19 Score=180.23 Aligned_cols=139 Identities=15% Similarity=0.074 Sum_probs=95.4
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCC------CCCCCCCHHHHHHhc---CCHHHHHHHHhcccCCCCCcCCCCCCh
Q 006054 206 GETPLYVAAERGYKDVTQDILLTCKSPAD------HGPMGRTALHAAAFR---NDTEMTKVLLDSSIGTQTSKADQQGWL 276 (663)
Q Consensus 206 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~------~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~~g~~~~~~d~~g~t 276 (663)
..++|+.|+..|+.+.++.|++.|.+++. .+..|.||||+|+.. ++.+++++|++. |++++.+|.+|.|
T Consensus 151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~--gadvn~~d~~G~T 228 (301)
T 2b0o_E 151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNT 228 (301)
T ss_dssp CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHH--SSCTTCCCTTCCC
T ss_pred hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhc--CCCCCCCCCCCCC
Confidence 45678888888888888888888888776 466777777777775 677777777777 6677777777777
Q ss_pred HHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCC
Q 006054 277 PLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGS 354 (663)
Q Consensus 277 pLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~ 354 (663)
|||+|+..|+.+++++|+++++++ +..|.+|.||||+|+..|+.++++.|++.+++ .|.||||+|+.+|+
T Consensus 229 pLh~A~~~g~~~~v~~Ll~~gad~-~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~-------~g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 229 ALHYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAG-------TFAFPLHVDYSWVI 298 (301)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCC-SCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH-------TTSSCCC-------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC-------CCCChhHHHHhcCC
Confidence 777777777777777777776665 55666677777777777777777666665432 45666666666554
No 102
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.77 E-value=8.1e-19 Score=153.33 Aligned_cols=118 Identities=20% Similarity=0.176 Sum_probs=107.6
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHH
Q 006054 203 NNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAA 282 (663)
Q Consensus 203 ~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~ 282 (663)
+..|.||||+|+..|+.+++++|++.|.+++..+..|.||||+|+..++.+++++|++. |.+++.+|.+|.||||+|+
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--g~~~~~~d~~g~tpL~~A~ 81 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK--GADINAPDKHHITPLLSAV 81 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTT--TCCTTCCCTTSCCHHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHcCCHHHHHHHHHc--CCCCCcCCCCCCCHHHHHH
Confidence 45688999999999999999999999999999999999999999999999999999998 7899999999999999999
Q ss_pred HcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHH
Q 006054 283 HLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNT 323 (663)
Q Consensus 283 ~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~ 323 (663)
..|+.+++++|++++++. +..|.+|.||+|+|+..+..++
T Consensus 82 ~~~~~~~v~~Ll~~ga~~-~~~~~~g~t~l~~A~~~~~~~l 121 (123)
T 3aaa_C 82 YEGHVSCVKLLLSKGADK-TVKGPDGLTAFEATDNQAIKAL 121 (123)
T ss_dssp HHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHCCCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHhCCHHHHHH
Confidence 999999999999999887 7789999999999965554444
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.76 E-value=2.2e-17 Score=165.97 Aligned_cols=179 Identities=20% Similarity=0.171 Sum_probs=122.3
Q ss_pred cCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCC--CCCcchhHHHHHHh------hCCCc-------CCChHHHHHHHcC
Q 006054 119 TNTKGETLLHIAARHGHADVVKDLIAECKKPHQ--NDPEKGVEAVRLMQ------GMTNE-------AKDTALHEAARYN 183 (663)
Q Consensus 119 ~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~--~~~~~~~~~~~~~l------~~~~~-------~g~t~L~~A~~~g 183 (663)
.|..+.++++.+...|+..+.+.+-........ +.+..........+ ..... ...++|+.|+..|
T Consensus 62 ~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~~ 141 (278)
T 1dcq_A 62 LDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKTR 141 (278)
T ss_dssp TSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhhc
Confidence 567888999999999998877766543322211 11111111111111 11111 1135778888888
Q ss_pred CHHHHHHHHHcCCCCCC-----CCCCCCCcHHHHHHHc---CCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHH
Q 006054 184 QIDVVKMLTKEDPSLPY-----DANNAGETPLYVAAER---GYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMT 255 (663)
Q Consensus 184 ~~~iv~~Ll~~~~~~~~-----~~~~~g~tpL~~A~~~---g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v 255 (663)
+.+.++.+++.+++... ..+..|.||||+|+.. |+.+++++|+++|++++..|..|.||||+|+..|+.+++
T Consensus 142 d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~~~v 221 (278)
T 1dcq_A 142 DIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL 221 (278)
T ss_dssp CHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCHHHH
T ss_pred ccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence 88888888887776432 2366778888888887 778888888888888887777888888888888888888
Q ss_pred HHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCcc
Q 006054 256 KVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKS 299 (663)
Q Consensus 256 ~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~ 299 (663)
++|++. |++++.+|.+|.||||+|+..|+.+++++|++++++
T Consensus 222 ~~Ll~~--gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 222 KLLLRG--KASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHT--TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHc--CCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 888876 677778888888888888888888888888876654
No 104
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.73 E-value=7.7e-18 Score=175.26 Aligned_cols=149 Identities=17% Similarity=0.109 Sum_probs=99.9
Q ss_pred CCCCCHHHHHHhc-CCHHHHHHHHhcccCCCCCcCC--CCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHH
Q 006054 237 PMGRTALHAAAFR-NDTEMTKVLLDSSIGTQTSKAD--QQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLH 313 (663)
Q Consensus 237 ~~g~t~L~~A~~~-~~~~~v~~Ll~~~~g~~~~~~d--~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh 313 (663)
..+.|+||.|+.. ++.++++.|++. |.+++..+ .+|.||||+|+..|+.+++++|+++++++ +..|..|.||||
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~--Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadv-n~~d~~G~TpLh 273 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAH--GADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANV-NQADSAGRGPLH 273 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHT--TCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHc--CCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCC-CCCCCCCCCHHH
Confidence 3456788888887 888888888877 67777776 77888888888888888888888887776 567778888888
Q ss_pred HHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHHHHhCC
Q 006054 314 LAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLEHAGSG 389 (663)
Q Consensus 314 ~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhlA~~~~ 389 (663)
+|+..|+.++++.|++.+.+. +..|..|.||||+|+..++.+++++|++...........+..+.|+++++....
T Consensus 274 ~A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 274 HATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 888888888888888876654 677888888888888888888888888664334455556677788888777654
No 105
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.73 E-value=1.4e-17 Score=167.40 Aligned_cols=120 Identities=18% Similarity=0.181 Sum_probs=75.0
Q ss_pred CHHHHHHhcCCHHHHHHHHhcccCCC------CCcCCCCCChHHHHHHHc---CCHHHHHHHHhcCccccccCCCCCChH
Q 006054 241 TALHAAAFRNDTEMTKVLLDSSIGTQ------TSKADQQGWLPLHLAAHL---GYYNVVKELLKADKSAAYKADNEGKIP 311 (663)
Q Consensus 241 t~L~~A~~~~~~~~v~~Ll~~~~g~~------~~~~d~~g~tpLh~A~~~---g~~~iv~~Ll~~~~~~~~~~~~~g~tp 311 (663)
++|+.|+..++.+.++.+++. |.+ ++..|..|.||||+|+.. |+.+++++|+++++++ +..|..|.||
T Consensus 132 ~~l~~a~~~~d~~~~~~ll~~--g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~i-n~~d~~g~Tp 208 (278)
T 1dcq_A 132 HSLCEAVKTRDIFGLLQAYAD--GVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNL-DKQTGKGSTA 208 (278)
T ss_dssp HHHHHHHHTTCHHHHHHHHHT--TCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCT-TCCCTTCCCH
T ss_pred hhhhhHhhhcccHHHHHHHHh--hcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCc-cccCCCCCCH
Confidence 466666666666666666666 333 333356666666666666 5666666666666655 4556666666
Q ss_pred HHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhC
Q 006054 312 LHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKS 364 (663)
Q Consensus 312 Lh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~ 364 (663)
||+|+..|+.++++.|++.+++. +.+|..|+||||+|+..|+.+++++|++.
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ 260 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASI-EIANESGETPLDIAKRLKHEHCEELLTQA 260 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCC-CCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence 66666666666666666655543 55666666666666666666666666655
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.70 E-value=1.1e-16 Score=132.17 Aligned_cols=92 Identities=35% Similarity=0.499 Sum_probs=60.1
Q ss_pred CCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHHHHcCCCCCCC
Q 006054 122 KGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKMLTKEDPSLPYD 201 (663)
Q Consensus 122 ~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~ 201 (663)
+|.||||+|+..|+.+++++|++.|++++. +|..|.||||+|+..|+.+++++|++.++++. .
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~----------------~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~-~ 63 (93)
T 1n0q_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA----------------KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-A 63 (93)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT-C
T ss_pred CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc----------------cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC-c
Confidence 366777777777777777777776666544 55566677777777777777777666666644 4
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCC
Q 006054 202 ANNAGETPLYVAAERGYKDVTQDILLTCK 230 (663)
Q Consensus 202 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~ 230 (663)
.+..|.||||+|+..|+.+++++|++.|+
T Consensus 64 ~d~~g~t~l~~A~~~~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 64 KDKNGRTPLHLAARNGHLEVVKLLLEAGA 92 (93)
T ss_dssp CCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCC
Confidence 55666666666666666666666666654
No 107
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.70 E-value=9.3e-17 Score=132.54 Aligned_cols=91 Identities=40% Similarity=0.525 Sum_probs=55.9
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcC
Q 006054 206 GETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLG 285 (663)
Q Consensus 206 g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g 285 (663)
|.||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|++. |.+++.+|.+|.||||+|+..|
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~t~l~~A~~~~ 79 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GADVNAKDKNGRTPLHLAARNG 79 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHHHHTT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCCCccCCCCCCHHHHHHHcC
Confidence 55666666666666666666666666666666666666666666666666666665 5556666666666666666666
Q ss_pred CHHHHHHHHhcCc
Q 006054 286 YYNVVKELLKADK 298 (663)
Q Consensus 286 ~~~iv~~Ll~~~~ 298 (663)
+.+++++|+++++
T Consensus 80 ~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 80 HLEVVKLLLEAGA 92 (93)
T ss_dssp CHHHHHHHHHTTC
T ss_pred CHHHHHHHHHcCC
Confidence 6666666665543
No 108
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.70 E-value=7.2e-17 Score=167.92 Aligned_cols=147 Identities=20% Similarity=0.143 Sum_probs=115.2
Q ss_pred CCCCcHHHHHHHc-CCHHHHHHHHHhCCCCCCCC--CCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHH
Q 006054 204 NAGETPLYVAAER-GYKDVTQDILLTCKSPADHG--PMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHL 280 (663)
Q Consensus 204 ~~g~tpL~~A~~~-g~~eiv~~Ll~~~~~~~~~~--~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~ 280 (663)
..+.|+||.|+.. ++.++++.|+++|++++..+ ..|.||||+|+..++.+++++|++. |++++..|.+|.||||+
T Consensus 197 ~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~--Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 197 LHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQN--GANVNQADSAGRGPLHH 274 (368)
T ss_dssp CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHH
T ss_pred CCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHc--CCCCCCCCCCCCCHHHH
Confidence 3456799999999 99999999999999999887 7899999999999999999999998 78999999999999999
Q ss_pred HHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCc--ccccCCCCcHHHHHHHcC
Q 006054 281 AAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSC--ELVDDRGWNVFHFALQSG 353 (663)
Q Consensus 281 A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~--~~~d~~g~t~Lh~Av~~~ 353 (663)
|+..|+.+++++|++++++. +..|.+|.||||+|+..|+.++++.|+..+.... ...+..+.|+++++....
T Consensus 275 A~~~g~~~~v~~LL~~Gad~-~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~i~~~~~ 348 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADL-GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFS 348 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-----------------------
T ss_pred HHHcCcHHHHHHHHHCcCCC-CCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHHHHHHHH
Confidence 99999999999999999887 7788999999999999999999999987764322 234566778888776543
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.70 E-value=1.1e-16 Score=174.69 Aligned_cols=137 Identities=20% Similarity=0.165 Sum_probs=115.6
Q ss_pred CChHHHHHHHcCCHHHHHHHHHcCCCCCCC-----CCCCCCcHHHHHHH---cCCHHHHHHHHHhCCCCCCCCCCCCCHH
Q 006054 172 KDTALHEAARYNQIDVVKMLTKEDPSLPYD-----ANNAGETPLYVAAE---RGYKDVTQDILLTCKSPADHGPMGRTAL 243 (663)
Q Consensus 172 g~t~L~~A~~~g~~~iv~~Ll~~~~~~~~~-----~~~~g~tpL~~A~~---~g~~eiv~~Ll~~~~~~~~~~~~g~t~L 243 (663)
..+.||.|+..|+.+.++.|++.+++++.. .+..|.||||+|+. .|+.+++++|+++|++++..|.+|.|||
T Consensus 132 ~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 132 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTAL 211 (497)
T ss_dssp CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHH
T ss_pred cHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHH
Confidence 347799999999999999999999886532 37789999999976 8999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHh
Q 006054 244 HAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAG 317 (663)
Q Consensus 244 ~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~ 317 (663)
|+|+..|+.+++++|+++ |++++.+|.+|.||||+|+..|+.+++++|++++++.. .+|+|.+..
T Consensus 212 h~A~~~g~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~-------~~~~h~~~~ 276 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKG--RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF-------AFPLHVDYS 276 (497)
T ss_dssp HHHTTTTCHHHHHHHHHT--CCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC-------------------
T ss_pred HHHHHcCCHHHHHHHHHc--CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC-------CCcceeecc
Confidence 999999999999999998 89999999999999999999999999999999998762 268887654
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.68 E-value=1.6e-16 Score=173.61 Aligned_cols=124 Identities=16% Similarity=0.137 Sum_probs=78.7
Q ss_pred cHHHHHHHcCCHHHHHHHHHhCCCCCCC------CCCCCCHHHHHHh---cCCHHHHHHHHhcccCCCCCcCCCCCChHH
Q 006054 208 TPLYVAAERGYKDVTQDILLTCKSPADH------GPMGRTALHAAAF---RNDTEMTKVLLDSSIGTQTSKADQQGWLPL 278 (663)
Q Consensus 208 tpL~~A~~~g~~eiv~~Ll~~~~~~~~~------~~~g~t~L~~A~~---~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpL 278 (663)
+.||.|+..|+.+.++.|++.|++++.. +..|.||||+|+. .|+.+++++|++. |++++.+|.+|.|||
T Consensus 134 ~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~--ga~vn~~d~~g~TpL 211 (497)
T 3lvq_E 134 QRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQN--GGHLDAKAADGNTAL 211 (497)
T ss_dssp HHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHH--SCCTTCCCSSSCCHH
T ss_pred HHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHc--CCCCCccCCCCCcHH
Confidence 5677777777777777777777776655 5566666666644 6666666666665 566666666666666
Q ss_pred HHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCC
Q 006054 279 HLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSS 334 (663)
Q Consensus 279 h~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~ 334 (663)
|+|+..|+.+++++|+++|+++ +..|.+|.||||+|+..|+.++++.|++.+++.
T Consensus 212 h~A~~~g~~~~v~~Ll~~ga~~-~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~ 266 (497)
T 3lvq_E 212 HYAALYNQPDCLKLLLKGRALV-GTVNEAGETALDIARKKHHKECEELLEQAQAGT 266 (497)
T ss_dssp HHHTTTTCHHHHHHHHHTCCCC-SCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC--
T ss_pred HHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence 6666666666666666666655 445556666666666666666666666555443
No 111
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.68 E-value=3.7e-17 Score=140.81 Aligned_cols=105 Identities=26% Similarity=0.339 Sum_probs=57.8
Q ss_pred CCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHHHH
Q 006054 305 DNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHFALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPLLE 384 (663)
Q Consensus 305 ~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpLhl 384 (663)
|.+|.||||+|+..|+.++++.|++.+.+. +..|..|+||||+|+..++.+++++|+++ |++++.+|..|.||||+
T Consensus 6 d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~---g~~~~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 6 SKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAK---GADVNARSKDGNTPEHL 81 (115)
T ss_dssp SCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTT---TCCTTCCCTTCCCTTHH
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHc---CCCCcccCCCCCCHHHH
Confidence 445555555555555555555555554432 44555555556655555555555555555 55555555556666666
Q ss_pred HHhCCCccc-ccccccCcCccccccCCCCh
Q 006054 385 HAGSGSLIP-SFVCHPKVDRLAFNQNNCSA 413 (663)
Q Consensus 385 A~~~~~~~~-~lL~~~~ad~~~~n~~g~t~ 413 (663)
|+..++... ++|+++|+++|..+..|.||
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 555554433 55555566666555555554
No 112
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.67 E-value=6.7e-17 Score=139.19 Aligned_cols=109 Identities=28% Similarity=0.339 Sum_probs=91.4
Q ss_pred cCCCCCChHHHHHHHcCCHHHHHHHHhcCccccccCCCCCChHHHHHHhcCCHHHHHHHHHcCCCCcccccCCCCcHHHH
Q 006054 269 KADQQGWLPLHLAAHLGYYNVVKELLKADKSAAYKADNEGKIPLHLAAGKGRLNTVQELIMSCPSSCELVDDRGWNVFHF 348 (663)
Q Consensus 269 ~~d~~g~tpLh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~g~tpLh~Aa~~g~~~~v~~Ll~~~~~~~~~~d~~g~t~Lh~ 348 (663)
.+|.+|.||||+|+..|+.++++.|++.+.+. +..|..|.||||+|+..|+.+++++|++.+.+. +..|..|+||||+
T Consensus 4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~-~~~d~~g~tpl~~ 81 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADV-NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADV-NARSKDGNTPEHL 81 (115)
T ss_dssp CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCS-SCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCT-TCCCTTCCCTTHH
T ss_pred ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC-CCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCC-cccCCCCCCHHHH
Confidence 45778888888888888888888888888776 567788888999998888889888888887664 6788899999999
Q ss_pred HHHcCCHHHHHHHHhCCCCCCCCCCCCCCCCcHH
Q 006054 349 ALQSGSRRTIELLLKSPSLGNLVNEKNDDGNTPL 382 (663)
Q Consensus 349 Av~~~~~~iv~~Ll~~~~~~~~in~~d~~G~TpL 382 (663)
|+..++.+++++|+++ |+++|.++..|.||-
T Consensus 82 A~~~~~~~~~~~Ll~~---ga~~n~~~~~~~~~~ 112 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAK---GADVNARSWGSSHHH 112 (115)
T ss_dssp HHTTTCHHHHHHHHTT---SSSHHHHSCCCC---
T ss_pred HHHCCCHHHHHHHHHc---CCCCCcCCccccccc
Confidence 9999999999999988 899999999999873
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.53 E-value=2.9e-14 Score=121.46 Aligned_cols=90 Identities=23% Similarity=0.282 Sum_probs=52.4
Q ss_pred CCCCCCcHHHHHHHcCCHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCHHHHHHHHhcccCCCCCcCCCCCChHHHHH
Q 006054 202 ANNAGETPLYVAAERGYKDVTQDILLTCKSPADHGPMGRTALHAAAFRNDTEMTKVLLDSSIGTQTSKADQQGWLPLHLA 281 (663)
Q Consensus 202 ~~~~g~tpL~~A~~~g~~eiv~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~g~~~~~~d~~g~tpLh~A 281 (663)
.+.+|.||||+|+..|+.+++++|++.|++++..+..|.||||.|+..++.+++++|++. |++++.+|..|.||||+|
T Consensus 20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~--ga~~~~~d~~g~tpl~~A 97 (110)
T 2zgd_A 20 MGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA--GADVXAQDKFGKTAFDIS 97 (110)
T ss_dssp --CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT--TCCTTCCCTTSCCHHHHH
T ss_pred cCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc--CCCccccccCCCcHHHHH
Confidence 444555566666666666666666655555555555566666666666666666666655 455555566666666666
Q ss_pred HHcCCHHHHHHH
Q 006054 282 AHLGYYNVVKEL 293 (663)
Q Consensus 282 ~~~g~~~iv~~L 293 (663)
+..|+.+++++|
T Consensus 98 ~~~~~~~~~~~L 109 (110)
T 2zgd_A 98 IDNGNEDLAEIL 109 (110)
T ss_dssp HHHTCHHHHHHH
T ss_pred HHcCCHHHHHHh
Confidence 666666655544
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.53 E-value=3.4e-14 Score=121.07 Aligned_cols=97 Identities=24% Similarity=0.298 Sum_probs=68.6
Q ss_pred ChhhhhccCCCCCcHHHHHHHhccHHHHHHHHHhcCCCCCCCCcchhHHHHHHhhCCCcCCChHHHHHHHcCCHHHHHHH
Q 006054 112 CPGLLLKTNTKGETLLHIAARHGHADVVKDLIAECKKPHQNDPEKGVEAVRLMQGMTNEAKDTALHEAARYNQIDVVKML 191 (663)
Q Consensus 112 ~~~ll~~~~~~g~T~Lh~A~~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~t~L~~A~~~g~~~iv~~L 191 (663)
.+......+.+|.||||+|+..|+.+++++|++.+++++. +|..|.||||+|+..|+.+++++|
T Consensus 13 ~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~----------------~d~~g~tpLh~A~~~~~~~~v~~L 76 (110)
T 2zgd_A 13 LVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA----------------KDKNGSTPLHLAARNGHLEVVKLL 76 (110)
T ss_dssp ---------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC----------------CCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred CCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc----------------cCCCCCCHHHHHHHcCCHHHHHHH
Confidence 3444566778888888888888888888888888776654 566778888888888888888888
Q ss_pred HHcCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 006054 192 TKEDPSLPYDANNAGETPLYVAAERGYKDVTQDI 225 (663)
Q Consensus 192 l~~~~~~~~~~~~~g~tpL~~A~~~g~~eiv~~L 225 (663)
++.++++. ..+..|.||||+|+..|+.+++++|
T Consensus 77 l~~ga~~~-~~d~~g~tpl~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 77 LEAGADVX-AQDKFGKTAFDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHTTCCTT-CCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred HHcCCCcc-ccccCCCcHHHHHHHcCCHHHHHHh
Confidence 88777654 4666777777777777777777765
No 115
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=72.37 E-value=43 Score=33.35 Aligned_cols=79 Identities=16% Similarity=0.210 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHcccccccCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHH
Q 006054 579 KLALFFMVFAFLTGTYSVLPSAKIL-AVIVSIITGGSILYIYAYDYAALFSLIK---AVMRFHVNRLQEIRKEFQLIYFL 654 (663)
Q Consensus 579 ~~~~~~~~~af~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 654 (663)
.++++-.+++|...+.-.+|....+ ++-+++++|..++++.++-......+.. ..++.+.+++..+.....-..|.
T Consensus 249 git~lLt~tv~~~~~~~~lP~~S~v~~id~~~~~~~~~v~~slle~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 328 (347)
T 3rhw_A 249 GVTTLLTMTAQSAGINSQLPPVSYIKAIDVWIGACMTFIFCALLEFALVNHIANAGTTEWNDISKRVDLISRALFPVLFF 328 (347)
T ss_dssp HHHHHHHHHHHHHHHHHTSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EeehHHHHHHHHHHHHhhCCCccceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhhhhHHHHHHHHHHHHHHHH
Confidence 3444555666777777777765433 5555555564444444433333222222 11233444444444444344444
Q ss_pred HHH
Q 006054 655 YLN 657 (663)
Q Consensus 655 ~~~ 657 (663)
++|
T Consensus 329 i~n 331 (347)
T 3rhw_A 329 VFN 331 (347)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
No 116
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein, transport protei; HET: LMT; 2.60A {Gloeobacter violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A* 3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A* 3eam_A* 4f8h_A* 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A ...
Probab=56.33 E-value=1.1e+02 Score=29.93 Aligned_cols=77 Identities=12% Similarity=0.099 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHcccccccCCchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHH
Q 006054 579 KLALFFMVFAFLTGTYSVLPSAKIL-AVIVSIITGGSILYIYAYDYAALFSLIKAVMRFHVNR-LQEIRKEFQLIYFLY 655 (663)
Q Consensus 579 ~~~~~~~~~af~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 655 (663)
.++++-.+++|...+.-.+|....+ ++-+++.+|..++++.++.......+....-+...++ .++.|..|+..+++.
T Consensus 232 ~it~lL~~t~~~~~~~~~lP~~s~vp~i~~~~~~~~~~v~~sll~~v~v~~l~~~~~~~~a~~~p~w~r~~fp~~f~~~ 310 (321)
T 3tlw_A 232 VVSTLIAHIAFNILVETCLPKTPYMTYTGAIIFMIYLFYFVAVIEVTVQHYLKVESQPARAASITRASRIAFPVVFLLA 310 (321)
T ss_dssp HHHHHHHHHHHHHHHCCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EhhHHHHHHHHHHHHHhhCCCccccHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCccccccccChhheeeehHHHHHH
Confidence 3444555666777777778875433 4445444554433333333332222222221222223 556666666654443
No 117
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=34.54 E-value=21 Score=22.43 Aligned_cols=19 Identities=21% Similarity=0.391 Sum_probs=16.9
Q ss_pred HHHHHHHcCChhHHHhhhh
Q 006054 33 SLYKAAVEGHTDQFRAHAT 51 (663)
Q Consensus 33 ~L~~Aa~~g~~~~v~~Ll~ 51 (663)
.++.||..||++.++.|-.
T Consensus 16 qiyvA~seGd~etv~~Le~ 34 (40)
T 1gp8_A 16 QMDAAASKGDVETYRKLKA 34 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHH
Confidence 7899999999999987754
Done!