BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006056
(663 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3AIH|A Chain A, Human Os-9 Mrh Domain Complexed With Alpha3,Alpha6-Man5
pdb|3AIH|B Chain B, Human Os-9 Mrh Domain Complexed With Alpha3,Alpha6-Man5
Length = 124
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 585 YHIMLFSNGDKC-WNGPDRSMKVRLRC----GLKNEVTD-VDEPSRCEYVALLYTPAVC 637
YH + NG KC NG R +VR C G+ + D VDEP C YV + TP +C
Sbjct: 65 YHSQTYGNGSKCDLNGRPREAEVRFLCDEGAGISGDYIDRVDEPLSCSYVLTIRTPRLC 123
>pdb|2P12|A Chain A, Crystal Structure Of Protein Of Unknown Function Duf402
From Rhodococcus Sp. Rha1
pdb|2P12|B Chain B, Crystal Structure Of Protein Of Unknown Function Duf402
From Rhodococcus Sp. Rha1
Length = 176
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 582 EDSY-HIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYT 633
+D Y I F+ GD W D + + +R G E+ DVDE LL T
Sbjct: 84 QDHYVDIGTFTRGDDVWKSEDHYLDLVVRTGRDTELLDVDELXEAHTTGLLDT 136
>pdb|1ZIN|A Chain A, Adenylate Kinase With Bound Ap5a
pdb|1ZIO|A Chain A, Phosphotransferase
pdb|1ZIP|A Chain A, Bacillus Stearothermophilus Adenylate Kinase
Length = 217
Score = 31.2 bits (69), Expect = 1.9, Method: Composition-based stats.
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 1/87 (1%)
Query: 94 GKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIA 153
G+ C+N G + +IF G+CD C G + Y T +V ++K +
Sbjct: 126 GRRICRNCGATYHLIFHPPAKPGVCDKC-GGELYQRADDNEATVANRLEVNMKQMKPLVD 184
Query: 154 TYQEGVLLRKKEIEQAKQNLVKDEAEL 180
Y++ LR EQ + + D EL
Sbjct: 185 FYEQKGYLRNINGEQDMEKVFADIREL 211
>pdb|3GON|A Chain A, Streptococcus Pneumoniae Phosphomevalonate Kinase In
Complex With Phosphomevalonate And Amppnp
Length = 335
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 272 ESFDQGKAENVDEEPATEAKQI-GTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVP 330
E+ +QGK+E + E+ +K + G S ++ TP+ + A+++++ A S G
Sbjct: 241 EALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGI 300
Query: 331 ETSSDAES 338
S DA+S
Sbjct: 301 ALSFDAQS 308
>pdb|1K47|A Chain A, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|B Chain B, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|C Chain C, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|D Chain D, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|E Chain E, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
pdb|1K47|F Chain F, Crystal Structure Of The Streptococcus Pneumoniae
Phosphomevalonate Kinase (Pmk)
Length = 337
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 272 ESFDQGKAENVDEEPATEAKQI-GTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVP 330
E+ +QGK+E + E+ +K + G S ++ TP+ + A+++++ A S G
Sbjct: 243 EALEQGKSEKIIEQVEVASKLLEGLSTDIYTPLLRQLKEASQDLQAVAKSSGAGGGDCGI 302
Query: 331 ETSSDAES 338
S DA+S
Sbjct: 303 ALSFDAQS 310
>pdb|1WE5|A Chain A, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|B Chain B, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|C Chain C, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|D Chain D, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|E Chain E, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
pdb|1WE5|F Chain F, Crystal Structure Of Alpha-Xylosidase From Escherichia
Coli
Length = 772
Score = 30.4 bits (67), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 552 NKYVYKVCPYKKATQEEGHSTTR----LGSWDKFEDSYHIMLFSNGDKC 596
N Y+ + P K QE+G+ R L WDK++ I F+N D C
Sbjct: 347 NPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDAC 395
>pdb|1XSI|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSI|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|A Chain A, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|B Chain B, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|C Chain C, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|D Chain D, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|E Chain E, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSJ|F Chain F, Structure Of A Family 31 Alpha Glycosidase
pdb|1XSK|A Chain A, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|B Chain B, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|C Chain C, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|D Chain D, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|E Chain E, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
pdb|1XSK|F Chain F, Structure Of A Family 31 Alpha Glycosidase Glycosyl-Enzyme
Intermediate
Length = 778
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 552 NKYVYKVCPYKKATQEEGHSTTR----LGSWDKFEDSYHIMLFSNGDKC 596
N Y+ + P K QE+G+ R L WDK++ I F+N D C
Sbjct: 347 NPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDAC 395
>pdb|2F2H|A Chain A, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|B Chain B, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|C Chain C, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|D Chain D, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|E Chain E, Structure Of The Yici Thiosugar Michaelis Complex
pdb|2F2H|F Chain F, Structure Of The Yici Thiosugar Michaelis Complex
Length = 773
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 552 NKYVYKVCPYKKATQEEGHSTTR----LGSWDKFEDSYHIMLFSNGDKC 596
N Y+ + P K QE+G+ R L WDK++ I F+N D C
Sbjct: 347 NPYIGQKSPVFKELQEKGYLLKRPDGSLWQWDKWQPGLAIYDFTNPDAC 395
>pdb|4DCI|A Chain A, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|B Chain B, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|C Chain C, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|D Chain D, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|E Chain E, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|F Chain F, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|G Chain G, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
pdb|4DCI|H Chain H, Crystal Structure Of Unknown Funciton Protein From
Synechococcus Sp. Wh 8102
Length = 150
Score = 28.9 bits (63), Expect = 8.5, Method: Composition-based stats.
Identities = 13/55 (23%), Positives = 37/55 (67%)
Query: 147 KLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERK 201
++++++A Q+ V ++ E+E+ K+NL++ +A++ L+ ++ + +G ++ E K
Sbjct: 70 RVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQVRELEXDQIVEQGQLESSCEIK 124
>pdb|4DDQ|A Chain A, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|B Chain B, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|C Chain C, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|D Chain D, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|E Chain E, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
pdb|4DDQ|F Chain F, Structural Plasticity Of The Bacillus Subtilis Gyra
Homodimer
Length = 502
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Query: 161 LRKKEIEQAKQNLVKDEAELSN-LKNEEKILKGLVQQLKERKEQ 203
L +++IE+ Q+LVK AEL + L NE K+L+ + ++L E KE+
Sbjct: 435 LEREKIEEEYQSLVKLIAELKDILANEYKVLEIIREELTEIKER 478
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.308 0.127 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,323,674
Number of Sequences: 62578
Number of extensions: 753033
Number of successful extensions: 1451
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 1437
Number of HSP's gapped (non-prelim): 38
length of query: 663
length of database: 14,973,337
effective HSP length: 105
effective length of query: 558
effective length of database: 8,402,647
effective search space: 4688677026
effective search space used: 4688677026
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)