Query 006056
Match_columns 663
No_of_seqs 285 out of 1392
Neff 5.3
Searched_HMMs 46136
Date Thu Mar 28 17:43:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006056.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006056hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2397 Protein kinase C subst 100.0 1E-74 2.2E-79 622.7 29.3 448 41-645 29-476 (480)
2 PF12999 PRKCSH-like: Glucosid 100.0 4.1E-46 8.8E-51 361.1 15.1 154 37-192 16-174 (176)
3 PF13015 PRKCSH_1: Glucosidase 100.0 2.3E-41 4.9E-46 324.2 16.2 153 504-663 1-154 (154)
4 KOG3394 Protein OS-9 [General 99.7 3.3E-18 7.2E-23 187.2 8.6 122 520-642 82-234 (502)
5 PF12999 PRKCSH-like: Glucosid 99.2 2.3E-11 4.9E-16 119.2 8.6 105 93-202 35-170 (176)
6 PF07915 PRKCSH: Glucosidase I 99.0 2.6E-10 5.6E-15 97.8 3.8 53 544-596 1-81 (81)
7 cd00112 LDLa Low Density Lipop 98.4 1.3E-07 2.8E-12 69.6 2.3 32 55-87 3-34 (35)
8 PF00057 Ldl_recept_a: Low-den 98.4 1.7E-07 3.6E-12 70.0 2.3 33 54-87 4-36 (37)
9 PF00057 Ldl_recept_a: Low-den 98.3 3.9E-07 8.5E-12 68.0 2.5 34 90-127 2-35 (37)
10 cd00112 LDLa Low Density Lipop 98.3 2.8E-07 6.1E-12 67.8 1.7 33 91-127 1-33 (35)
11 smart00192 LDLa Low-density li 98.2 9.7E-07 2.1E-11 64.1 2.1 32 91-126 2-33 (33)
12 smart00192 LDLa Low-density li 98.1 1.6E-06 3.4E-11 63.0 2.6 29 56-85 5-33 (33)
13 KOG2397 Protein kinase C subst 97.8 3.2E-05 6.9E-10 85.8 7.4 105 95-205 44-178 (480)
14 PF02157 Man-6-P_recep: Mannos 97.5 0.00018 3.9E-09 75.5 5.9 102 538-639 52-182 (278)
15 KOG1215 Low-density lipoprotei 96.8 0.00086 1.9E-08 80.9 4.3 83 42-128 204-293 (877)
16 KOG1215 Low-density lipoprotei 96.5 0.0015 3.4E-08 78.8 3.3 71 54-127 139-251 (877)
17 PF00878 CIMR: Cation-independ 96.2 0.0032 7E-08 59.7 3.1 40 599-638 1-43 (145)
18 KOG3394 Protein OS-9 [General 95.6 0.0057 1.2E-07 68.8 1.8 96 544-639 347-476 (502)
19 KOG4504 Cation-independent man 94.7 0.086 1.9E-06 56.1 7.2 57 583-639 163-226 (370)
20 PF09451 ATG27: Autophagy-rela 94.0 0.11 2.4E-06 54.8 6.3 52 584-637 117-171 (268)
21 PF10211 Ax_dynein_light: Axon 91.9 6.9 0.00015 39.5 15.5 40 170-209 119-158 (189)
22 KOG4001 Axonemal dynein light 87.4 17 0.00037 37.3 13.8 81 137-219 151-233 (259)
23 KOG3509 Basement membrane-spec 75.6 2.9 6.3E-05 51.3 4.3 72 54-129 33-110 (964)
24 PF04885 Stig1: Stigma-specifi 70.5 11 0.00024 36.3 6.1 41 56-98 56-101 (136)
25 PF06919 Phage_T4_Gp30_7: Phag 66.6 2.5 5.4E-05 38.9 0.8 15 594-608 79-93 (121)
26 PF09726 Macoilin: Transmembra 62.1 1.7E+02 0.0037 35.5 15.0 13 236-248 612-624 (697)
27 PRK00409 recombination and DNA 62.0 1.3E+02 0.0027 37.0 14.1 59 148-206 504-562 (782)
28 PF12709 Kinetocho_Slk19: Cent 58.4 1.1E+02 0.0025 27.4 9.6 29 174-202 45-73 (87)
29 TIGR01069 mutS2 MutS2 family p 57.8 1.7E+02 0.0038 35.8 14.3 55 152-206 503-557 (771)
30 PF04977 DivIC: Septum formati 56.6 47 0.001 27.8 6.8 30 175-204 21-50 (80)
31 KOG1029 Endocytic adaptor prot 52.9 2.3E+02 0.005 34.8 13.5 7 105-111 268-274 (1118)
32 PRK11637 AmiB activator; Provi 52.7 3.7E+02 0.008 30.2 15.1 10 544-553 360-369 (428)
33 TIGR01069 mutS2 MutS2 family p 51.7 3.8E+02 0.0082 33.0 15.8 25 177-201 535-559 (771)
34 KOG1144 Translation initiation 49.8 96 0.0021 37.9 9.9 28 589-616 710-741 (1064)
35 KOG3119 Basic region leucine z 46.3 1.1E+02 0.0025 32.5 9.2 55 141-202 192-246 (269)
36 PRK10884 SH3 domain-containing 46.2 2.5E+02 0.0055 28.9 11.4 32 171-202 118-149 (206)
37 PRK00409 recombination and DNA 46.2 4.2E+02 0.0092 32.6 15.1 29 174-202 537-565 (782)
38 PRK11637 AmiB activator; Provi 45.0 5E+02 0.011 29.2 15.2 45 162-206 168-212 (428)
39 KOG0163 Myosin class VI heavy 43.7 3.9E+02 0.0086 32.9 13.5 17 54-70 661-678 (1259)
40 PF06364 DUF1068: Protein of u 42.1 1.9E+02 0.0042 29.0 9.3 38 106-152 57-94 (176)
41 PF13956 Ibs_toxin: Toxin Ibs, 42.0 9.7 0.00021 24.6 0.3 16 8-23 2-17 (19)
42 COG1579 Zn-ribbon protein, pos 41.8 3.5E+02 0.0075 28.7 11.7 59 148-206 22-80 (239)
43 PHA01750 hypothetical protein 41.5 1.1E+02 0.0025 26.1 6.5 33 499-531 42-74 (75)
44 PF07172 GRP: Glycine rich pro 40.8 30 0.00064 31.4 3.3 38 8-46 6-43 (95)
45 PTZ00121 MAEBL; Provisional 40.8 3.9E+02 0.0085 35.3 13.5 7 554-560 1991-1997(2084)
46 smart00030 CLb CLUSTERIN Beta 40.5 3E+02 0.0065 28.4 10.6 48 135-182 7-54 (206)
47 PF01093 Clusterin: Clusterin; 39.3 1.8E+02 0.0039 33.4 9.8 46 145-190 11-56 (436)
48 PRK06231 F0F1 ATP synthase sub 38.8 4.4E+02 0.0096 26.9 15.8 45 144-188 73-117 (205)
49 PF08317 Spc7: Spc7 kinetochor 38.6 2.2E+02 0.0048 30.9 10.2 24 179-202 217-240 (325)
50 COG4026 Uncharacterized protei 38.5 4.2E+02 0.0091 28.0 11.4 13 151-163 113-125 (290)
51 PRK09039 hypothetical protein; 38.0 5.3E+02 0.011 28.5 13.0 33 174-206 133-165 (343)
52 PRK08475 F0F1 ATP synthase sub 35.5 4.4E+02 0.0096 25.9 15.9 43 145-187 48-90 (167)
53 PTZ00121 MAEBL; Provisional 34.6 6E+02 0.013 33.7 13.7 14 546-560 1996-2009(2084)
54 PF08232 Striatin: Striatin fa 34.6 3.6E+02 0.0078 25.8 9.7 34 173-206 27-60 (134)
55 PRK00247 putative inner membra 34.2 5.9E+02 0.013 29.2 12.8 8 106-113 249-256 (429)
56 PF06698 DUF1192: Protein of u 33.7 1.2E+02 0.0026 25.3 5.5 29 173-201 23-51 (59)
57 PF08702 Fib_alpha: Fibrinogen 33.5 4E+02 0.0087 25.9 10.0 20 120-141 6-25 (146)
58 KOG2751 Beclin-like protein [S 33.4 5.8E+02 0.013 29.3 12.4 68 137-206 137-204 (447)
59 PF14193 DUF4315: Domain of un 33.1 1.3E+02 0.0029 26.7 6.0 24 179-202 9-32 (83)
60 PF11932 DUF3450: Protein of u 32.7 5.8E+02 0.013 26.5 11.8 27 173-199 44-70 (251)
61 PRK12704 phosphodiesterase; Pr 32.6 8.7E+02 0.019 28.5 15.9 29 481-510 268-297 (520)
62 PF04111 APG6: Autophagy prote 32.5 5.8E+02 0.013 27.8 12.1 36 171-206 57-92 (314)
63 PRK14161 heat shock protein Gr 32.2 3.3E+02 0.0071 27.5 9.4 42 165-206 13-54 (178)
64 KOG0163 Myosin class VI heavy 32.1 1.1E+03 0.024 29.4 14.9 6 558-563 1153-1158(1259)
65 PF12958 DUF3847: Protein of u 31.7 1.4E+02 0.0031 26.7 6.0 30 175-204 5-34 (86)
66 KOG3433 Protein involved in me 31.4 5.9E+02 0.013 26.1 11.9 44 160-203 98-141 (203)
67 CHL00118 atpG ATP synthase CF0 30.5 5E+02 0.011 25.0 15.2 42 146-187 49-90 (156)
68 PRK09174 F0F1 ATP synthase sub 30.5 6.1E+02 0.013 26.0 14.7 43 145-187 79-121 (204)
69 COG1842 PspA Phage shock prote 30.4 5.8E+02 0.013 26.6 11.2 43 164-206 85-127 (225)
70 KOG2412 Nuclear-export-signal 29.7 1E+03 0.022 28.3 14.9 18 532-550 422-439 (591)
71 KOG1219 Uncharacterized conser 29.2 49 0.0011 44.8 3.6 59 56-123 3868-3931(4289)
72 PRK13454 F0F1 ATP synthase sub 29.1 5.9E+02 0.013 25.4 14.6 44 144-187 56-99 (181)
73 smart00338 BRLZ basic region l 29.0 3.2E+02 0.007 22.4 9.6 22 179-200 27-48 (65)
74 TIGR02209 ftsL_broad cell divi 28.5 2.6E+02 0.0057 23.8 7.1 32 175-206 28-59 (85)
75 PF10168 Nup88: Nuclear pore c 28.1 6E+02 0.013 31.1 12.3 48 159-206 546-593 (717)
76 PRK10040 hypothetical protein; 28.1 1.1E+02 0.0023 24.9 4.0 11 54-64 32-42 (52)
77 CHL00019 atpF ATP synthase CF0 27.8 6.1E+02 0.013 25.1 15.7 42 146-187 51-92 (184)
78 TIGR01843 type_I_hlyD type I s 27.8 7.3E+02 0.016 27.0 12.2 90 142-232 175-264 (423)
79 TIGR03319 YmdA_YtgF conserved 27.8 1E+03 0.022 27.8 16.2 37 473-509 254-290 (514)
80 PF12128 DUF3584: Protein of u 27.5 1.3E+03 0.028 29.9 15.7 36 508-543 994-1029(1201)
81 PRK06569 F0F1 ATP synthase sub 27.2 6.2E+02 0.014 25.1 10.9 44 147-190 38-81 (155)
82 PRK14474 F0F1 ATP synthase sub 26.9 7.6E+02 0.017 26.0 15.8 43 146-188 32-74 (250)
83 KOG4504 Cation-independent man 26.6 82 0.0018 34.4 4.2 68 571-639 18-93 (370)
84 KOG0996 Structural maintenance 26.1 1.2E+03 0.026 30.2 14.3 8 6-13 126-133 (1293)
85 COG3937 Uncharacterized conser 25.8 1.7E+02 0.0036 27.4 5.5 45 474-522 62-106 (108)
86 PF04111 APG6: Autophagy prote 25.7 9E+02 0.019 26.4 12.6 38 169-206 48-85 (314)
87 TIGR02680 conserved hypothetic 25.5 1.2E+03 0.026 30.6 15.1 7 575-581 629-635 (1353)
88 PF04977 DivIC: Septum formati 25.0 2.4E+02 0.0052 23.4 6.2 27 171-197 24-50 (80)
89 PRK13428 F0F1 ATP synthase sub 25.0 1.1E+03 0.023 27.0 15.1 38 148-185 30-67 (445)
90 PF03993 DUF349: Domain of Unk 24.9 3.2E+02 0.007 22.6 6.9 36 137-172 11-46 (77)
91 smart00787 Spc7 Spc7 kinetocho 24.7 5.4E+02 0.012 28.1 10.2 6 193-198 226-231 (312)
92 KOG0250 DNA repair protein RAD 24.0 1.3E+03 0.029 29.5 14.2 23 177-199 400-422 (1074)
93 PRK14472 F0F1 ATP synthase sub 24.0 6.9E+02 0.015 24.5 15.8 44 145-188 44-87 (175)
94 PF00170 bZIP_1: bZIP transcri 23.8 4.1E+02 0.0088 21.7 9.7 21 179-199 27-47 (64)
95 PRK13453 F0F1 ATP synthase sub 23.6 7.1E+02 0.015 24.5 15.8 44 145-188 44-87 (173)
96 TIGR03321 alt_F1F0_F0_B altern 23.6 8.4E+02 0.018 25.3 15.8 43 146-188 32-74 (246)
97 COG4499 Predicted membrane pro 23.5 1.6E+02 0.0035 33.3 5.8 24 177-200 368-391 (434)
98 PF10883 DUF2681: Protein of u 23.4 3.8E+02 0.0081 24.2 7.1 16 187-202 32-47 (87)
99 PF04568 IATP: Mitochondrial A 23.3 4.2E+02 0.0092 24.4 7.6 27 166-192 71-97 (100)
100 PF05262 Borrelia_P83: Borreli 23.2 1.2E+03 0.027 27.2 13.6 10 571-580 462-471 (489)
101 PF07946 DUF1682: Protein of u 23.2 2.5E+02 0.0054 30.6 7.3 22 158-179 249-270 (321)
102 PF06428 Sec2p: GDP/GTP exchan 23.2 68 0.0015 29.4 2.5 31 168-198 12-43 (100)
103 PF00878 CIMR: Cation-independ 22.8 66 0.0014 30.3 2.5 28 569-596 114-144 (145)
104 PRK00106 hypothetical protein; 22.7 1.3E+03 0.029 27.3 16.2 36 473-508 275-310 (535)
105 PRK04863 mukB cell division pr 22.4 1.6E+03 0.034 30.1 15.2 58 148-206 278-335 (1486)
106 KOG3119 Basic region leucine z 22.0 4.2E+02 0.009 28.3 8.5 34 169-202 206-239 (269)
107 PF12329 TMF_DNA_bd: TATA elem 21.9 5.2E+02 0.011 22.3 9.1 20 181-200 36-55 (74)
108 PF04012 PspA_IM30: PspA/IM30 21.5 8.4E+02 0.018 24.6 10.4 63 153-215 84-149 (221)
109 PRK10803 tol-pal system protei 21.4 4.5E+02 0.0098 27.8 8.6 34 173-206 56-89 (263)
110 PF09726 Macoilin: Transmembra 21.3 1.4E+03 0.031 27.8 13.7 32 499-530 622-653 (697)
111 PF05262 Borrelia_P83: Borreli 21.1 1.4E+03 0.03 26.9 13.6 6 106-111 156-161 (489)
112 KOG1144 Translation initiation 20.5 9.3E+02 0.02 30.0 11.5 17 549-565 601-617 (1064)
113 PRK00888 ftsB cell division pr 20.3 4.2E+02 0.009 24.3 7.1 31 172-202 28-58 (105)
114 PHA02562 46 endonuclease subun 20.2 9.4E+02 0.02 27.6 11.6 76 145-224 332-407 (562)
115 KOG4571 Activating transcripti 20.0 8.6E+02 0.019 26.6 10.2 20 181-200 251-270 (294)
No 1
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]
Probab=100.00 E-value=1e-74 Score=622.69 Aligned_cols=448 Identities=37% Similarity=0.611 Sum_probs=317.3
Q ss_pred CCCCCCCcccccCCCCceecCCCCCcccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCcccCCCCC
Q 006056 41 YGISPQDENYYKTSSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVNDGICDC 120 (663)
Q Consensus 41 ~Gv~~~~~~~y~~~~~~F~C~~gs~~Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~f~C~n~g~~~~~Ip~s~VcDg~cDC 120 (663)
.|++..+..+|. .+..|+|++|+..|+++++||+||||+||||||||+|||++.|||.|.||+|.+||+++|+||||||
T Consensus 29 v~~~~~~~~~y~-as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDC 107 (480)
T KOG2397|consen 29 VALSIENLYLYD-ASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDC 107 (480)
T ss_pred cccccccccccc-cccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechhccCccccc
Confidence 555555777777 5669999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 006056 121 CDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKER 200 (663)
Q Consensus 121 cDGSDE~~~~~~C~n~C~e~g~~~r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ 200 (663)
||||||+.+++.|||+|.++|+++|..+++...+++.|+++|.+++.++++.+.+.+..+..|..++..++....+|+..
T Consensus 108 CDgSDE~~Sgv~c~ntC~e~gR~~r~~~~~~~~~yk~G~e~R~~~i~e~k~~~~~~e~~l~~l~~e~~~l~~~~~~l~~~ 187 (480)
T KOG2397|consen 108 CDGSDEYLSGVDCPNTCIELGRAARIMLEKDAEIYKPGKEIREELLDESKTAREAFEAPLDKLSDELKVLEGDGEQLRST 187 (480)
T ss_pred ccCCCCccCCCCCcchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcccccchhhhcchhhhhhHHhhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhHhhhhccCCCCCCCccccccccccccccccccccc
Q 006056 201 KEQIEKAEEKERLQREKEEKERKEAEENERKEKSESGEKAMQEKNKAEENAYSDDKPDDVRHDDKVGVLEEESFDQGKAE 280 (663)
Q Consensus 201 ke~~e~~e~~er~~~~k~~k~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~ 280 (663)
+++++..++.++.....+.+..+.+ ..+ +.+. ..+. +.+-......+ +.-| +.
T Consensus 188 ~e~~E~~~~~e~~~~~~~~~~~~~~-----~~~--~~~~---~~~~-------e~d~~~~~~~~-~tel-------~~-- 240 (480)
T KOG2397|consen 188 KEKGEFDERKEKDQIQGQEELLKAA-----RSR--AQAD---LVFD-------ELDDDTNLLVE-LTEL-------YT-- 240 (480)
T ss_pred HHHHHHHHHHhhccccchHHHHHHH-----Hhh--hcch---hcCc-------cccCccccccc-cccc-------cc--
Confidence 9977776555433322222211111 100 0000 0000 00000000000 0000 00
Q ss_pred CCCCcchhhhhhccccCCCCCCCcCcccchhhHhhhhhcccCCCCCCCCCCCCcccccCCCchhhhhhhhhhccCCccch
Q 006056 281 NVDEEPATEAKQIGTSQNLGTPVNGVEQHATEEMEQSASSRSKDGSSTVPETSSDAESQMPPEAEKKEEKNLENGVSENT 360 (663)
Q Consensus 281 ~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~e~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 360 (663)
. +..+ ..+. +.| ...++...+
T Consensus 241 ---~-----~~~d-------~~~~----------~~i----------------------------------~~~E~k~~~ 261 (480)
T KOG2397|consen 241 ---C-----TLLD-------CDKD----------GKI----------------------------------LSFEIKRLK 261 (480)
T ss_pred ---C-----cccc-------cccc----------ccc----------------------------------cHHHHHHhh
Confidence 0 0000 0000 000 001111223
Q ss_pred hhhhhhhhhhhhcccccccccccccCCCCCccCCCCCCCCCCCCCCcccccccCCCCCCccccccccCCCCCCCCCCCCC
Q 006056 361 EELSREELGRLVASRWTGEKTEKQSGEGGAIANDDQGEDVPEYNHDDEEDRYATDTDDDSERYDTEKYDDNDVEDDIDEP 440 (663)
Q Consensus 361 ~~~~~~d~~~~~~~~w~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (663)
+...+.++..|....|..++..+.+..... +++.+.. +. +.....+..+++. ..+.
T Consensus 262 ~~~~~~~~~~~~~~~~s~l~~l~~t~~~~~--------~~~~~~~-~~-----------~~~~~~~~~~~~~-~~~~--- 317 (480)
T KOG2397|consen 262 GELTQHDADSFRDTETSNLEHLYHTTPRPE--------SPEQREE-EP-----------TLRGVLNSPSEEP-RHDE--- 317 (480)
T ss_pred ccccccCccccccchhhhhHhhhccCCCcc--------Ccccccc-cc-----------cccccccCCcccc-chhh---
Confidence 344455666677777777665554211100 0011110 00 0001111111100 0000
Q ss_pred ccccCCCcccccccCCCCCcccccccCCCCCCchHHHHHHHHHHHHHhhccCCCCcChhhHHHHHHHHHHHHHHHHHHHH
Q 006056 441 YREEDHDYTSTSYKTDVDDDLDMSEMTTPSSPSWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQS 520 (663)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~ar~~~~~~e~~l~~l~~ 520 (663)
++-.++ +..+.... ..+| . -+|+.||++|+++++.+++|+.
T Consensus 318 -~~~~~d-----------~~~~~~~~--~s~p-----------------------~--~~a~~ar~~~de~~~~~k~l~~ 358 (480)
T KOG2397|consen 318 -EDINSD-----------DEGDSGDT--DSPP-----------------------S--LQASEARNELDEAERKLKDLDE 358 (480)
T ss_pred -hcccCC-----------cccccCCC--CCch-----------------------H--HHHHHHHHHHHHHHHHHHHHHH
Confidence 000011 01111000 0112 1 2678999999999999999999
Q ss_pred HHHHHHhhhcccCCchhhhhhhccceEEeecCeEEEEeecCCceeeccCCCceeeccccccCCCeeEEEecCCccCCCCC
Q 006056 521 RISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFEDSYHIMLFSNGDKCWNGP 600 (663)
Q Consensus 521 ~i~~~~~~L~~d~G~~~~~~~L~~~C~~~~~g~YtYelC~~~~v~Q~~g~~~~~LG~~~~~~~~y~~m~y~~G~~CwNGp 600 (663)
+|+++++.++.||| ..+|++++|+||....|+|||.||||+.++|+ .+..|.|.+... .+|.|+||++|||||
T Consensus 359 ~i~~l~~~~~~~~g-~~e~~~~~~~c~~~~~~~Y~Y~~c~~~~~tq~----~~~~~~w~~~e~--~~m~y~nG~~CWnGP 431 (480)
T KOG2397|consen 359 EIRELEDELNGDFG-LLEFAALKGQCFDRELGEYTYTVCPFKPVTQK----SIYGGSWSGPEG--SVMKYENGQQCWNGP 431 (480)
T ss_pred HHHHHHHHhhcccc-HHHHHHHhcceeeeccCcEEEEEccccccccc----ccccccccCCcc--ceeeecCccccccCC
Confidence 99999999999999 89999999999999999999999999999995 555666776655 799999999999999
Q ss_pred CceeEEEEEeCCCCceeeecCCCccEEEEEEecccCCCchhHHHH
Q 006056 601 DRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQEL 645 (663)
Q Consensus 601 ~Rst~V~l~Cg~~~~i~sV~Ep~kC~Y~~~~~TPa~C~~~~~~~l 645 (663)
+|||+|.+.||.+|+|++|+||+||+|.|+|.|||+|.++.+++.
T Consensus 432 ~RSa~v~v~Cg~e~~i~sv~Ep~kCeY~~~~~tPaaC~~~~~~~~ 476 (480)
T KOG2397|consen 432 NRSATVTVRCGLENEIVSVTEPSKCEYLFELVTPAACNEDFLKEP 476 (480)
T ss_pred CcceeEEEEecccceeeeccccccceeeeEecccccCCcchhhcc
Confidence 999999999999999999999999999999999999998876443
No 2
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=100.00 E-value=4.1e-46 Score=361.06 Aligned_cols=154 Identities=52% Similarity=0.949 Sum_probs=143.0
Q ss_pred CCCCCCCCCCCcccccC-CCCceecCCCCCc-ccCCCCCCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCccccCCCcc
Q 006056 37 NDPFYGISPQDENYYKT-SSNTIKCKDGSKK-FAKTQLNDDYCDCPDGTDEPGTSACPNGKFYCQNAGHSPLMIFSSKVN 114 (663)
Q Consensus 37 ~~p~~Gv~~~~~~~y~~-~~~~F~C~~gs~~-Ip~s~vcDg~cDC~DGSDE~gt~aC~~~~f~C~n~g~~~~~Ip~s~Vc 114 (663)
..++|||+|+.+++|.+ .++.|+|++|+.. ||+++|||||||||||||||||+||+++.|||.|.||+|.+||+++||
T Consensus 16 ~~~~~GV~p~~~~~Y~~~~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC~N~g~~p~~i~~s~Vn 95 (176)
T PF12999_consen 16 SSRIRGVSPSDQHLYEPSENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYCENKGHIPRYIPSSRVN 95 (176)
T ss_pred cCCCCCCCHHHHHHcCCCCCCceEecCCCCceecHHHccCcceeCCCCCCccccccCcCceEeeccCCCCCceeehhhhc
Confidence 34559999999999986 4678999998877 999999999999999999999999999999999999999999999999
Q ss_pred cCCCC---CCCCCCCcCCCCCCCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 006056 115 DGICD---CCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILK 191 (663)
Q Consensus 115 Dg~cD---CcDGSDE~~~~~~C~n~C~e~g~~~r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le 191 (663)
||||| ||||||| +.+.|||+|.++++++++.++++.+.++.|+++|++|+++|++++.+++.++.+|+.++...+
T Consensus 96 DGICDy~~CCDGSDE--~~~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~a~~~~~e~~~~l~~l~~ei~~~~ 173 (176)
T PF12999_consen 96 DGICDYDICCDGSDE--SGGKCPNTCAELGKEYREELEEEEEIYKEGLKIRQELIEEAKKKREELEKKLEELEKEIQAAK 173 (176)
T ss_pred CCcCcccccCCCCCC--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 9999999 445799999999999999999999999999999999999999999999999888888776555
Q ss_pred H
Q 006056 192 G 192 (663)
Q Consensus 192 ~ 192 (663)
+
T Consensus 174 ~ 174 (176)
T PF12999_consen 174 Q 174 (176)
T ss_pred c
Confidence 4
No 3
>PF13015 PRKCSH_1: Glucosidase II beta subunit-like protein
Probab=100.00 E-value=2.3e-41 Score=324.21 Aligned_cols=153 Identities=43% Similarity=0.825 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhccceEEeecCeEEEEeecCCceeeccCCCceeeccccccCC
Q 006056 504 VRKEYDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFYGHCFESKQNKYVYKVCPYKKATQEEGHSTTRLGSWDKFED 583 (663)
Q Consensus 504 ar~~~~~~e~~l~~l~~~i~~~~~~L~~d~G~~~~~~~L~~~C~~~~~g~YtYelC~~~~v~Q~~g~~~~~LG~~~~~~~ 583 (663)
++++|+++++++++|+++|+.+++.|+.||||+++|++|.++||++..|+|+|+||||++|+| +.++||+|.+|.
T Consensus 1 ~~~~~~~~e~~~~~l~~~i~~~~~~l~~dyG~d~~f~~l~~~c~~~~~~~Y~Y~~c~f~~v~Q----~~~~lG~~~~~~- 75 (154)
T PF13015_consen 1 LEKEIDEAERKLSDLESKIRELEDDLNKDYGPDDEFRALKGQCFEKKIGEYTYELCPFGNVTQ----DSTSLGSFKGWE- 75 (154)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHhCCeEEEeecCcEEEEEEECCCeee----ccccceeeccce-
Confidence 367899999999999999999999999999999999999999999999999999999999999 899999999997
Q ss_pred CeeEEEecCCccCCCCCCceeEEEEEeCCCCceeeecCCCccEEEEEEecccCCCchhHH-HHHHHHhhhccCCCCCCCC
Q 006056 584 SYHIMLFSNGDKCWNGPDRSMKVRLRCGLKNEVTDVDEPSRCEYVALLYTPAVCSEEKLQ-ELQHKLDELNKKQPQHHDE 662 (663)
Q Consensus 584 ~y~~m~y~~G~~CwNGp~Rst~V~l~Cg~~~~i~sV~Ep~kC~Y~~~~~TPa~C~~~~~~-~l~~~~~~~~~~~~~~hDE 662 (663)
+.+|.|+||++|||||+|||+|.|.||++++|++|.||++|+|+|+|.||++|...... .|.++ +...+..-+.|||
T Consensus 76 -~~~m~y~~G~~CwnGp~Rst~V~l~Cg~~~~l~sV~Ep~~C~Y~~~~~TP~aC~~~~~~~~l~~~-~~~~~~~i~~~d~ 153 (154)
T PF13015_consen 76 -GSKMKYENGDKCWNGPQRSTTVHLECGEENKLVSVSEPSKCEYVMEFETPAACDPSYLQQSLAEE-EIQANFKIPDYDE 153 (154)
T ss_pred -eeEEEECCCcccCCCCCcCEEEEEECCCcceEEEecCCCceEEEEEEeeCcccCChhhhhhhhhh-hhhCccccccccc
Confidence 77999999999999999999999999999999999999999999999999999776553 33333 3334444578999
Q ss_pred C
Q 006056 663 L 663 (663)
Q Consensus 663 L 663 (663)
|
T Consensus 154 l 154 (154)
T PF13015_consen 154 L 154 (154)
T ss_pred C
Confidence 8
No 4
>KOG3394 consensus Protein OS-9 [General function prediction only]
Probab=99.74 E-value=3.3e-18 Score=187.21 Aligned_cols=122 Identities=26% Similarity=0.457 Sum_probs=100.9
Q ss_pred HHHHHHHhhhcccCCchhhhhhhccc--eEEeecCeEEEEeecCCceeecc----CC-----CceeeccccccC------
Q 006056 520 SRISSLTQKLKHEFGPEKEFYSFYGH--CFESKQNKYVYKVCPYKKATQEE----GH-----STTRLGSWDKFE------ 582 (663)
Q Consensus 520 ~~i~~~~~~L~~d~G~~~~~~~L~~~--C~~~~~g~YtYelC~~~~v~Q~~----g~-----~~~~LG~~~~~~------ 582 (663)
...++-.+.+..- ++..++.+|... |..+..+||||++|+..+|+|+| ++ ....||.|.+-.
T Consensus 82 ~~~~E~~~~~k~~-~g~eLl~pl~~~~~C~~r~~~yWtYe~ChG~hVrQyH~E~~~~~~i~~qe~yLg~~~~~~~~~~ke 160 (502)
T KOG3394|consen 82 HSKEEETKDLKEP-QGDELLQPLYNDKLCLYRGEGYWTYEYCHGQHVRQYHEEPETKTGIVNQEFYLGNFLGKFTASLKE 160 (502)
T ss_pred cccccchhhhcCC-ChhhhhhhhhhcchheeeccceEEEEeeCCeeeeeeeccccccCcceeeeeeeeeccccchhhhhh
Confidence 3333444444445 455678888766 99999999999999999999999 12 234789988621
Q ss_pred ----------CCeeEEEecCCccC-CCCCCceeEEEEEeCC---CCceeeecCCCccEEEEEEecccCCCchhH
Q 006056 583 ----------DSYHIMLFSNGDKC-WNGPDRSMKVRLRCGL---KNEVTDVDEPSRCEYVALLYTPAVCSEEKL 642 (663)
Q Consensus 583 ----------~~y~~m~y~~G~~C-wNGp~Rst~V~l~Cg~---~~~i~sV~Ep~kC~Y~~~~~TPa~C~~~~~ 642 (663)
..|+.+.|+||+.| .+|.+|.++|++.|++ .+.|.+|.|++.|+|.|++.||.+|.+|.+
T Consensus 161 ~~~~~~~~~~~~Y~s~ty~nGT~CDltg~PR~~~VrYvC~~~~~~~~I~sV~EvssC~Ye~~I~tp~LC~hP~~ 234 (502)
T KOG3394|consen 161 REAEASTDDRKPYHSETYGNGTMCDLTGRPRMVEVRYVCDESSGKHYITSVTEVSSCVYEATILTPTLCSHPLF 234 (502)
T ss_pred hhhhhhhccccceeEEEecCCCccccCCCCceEEEEEEeCCCCCcceEEEEeeccceeEEEEEecccccCcccc
Confidence 26999999999999 8999999999999997 578999999999999999999999999876
No 5
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=99.23 E-value=2.3e-11 Score=119.22 Aligned_cols=105 Identities=26% Similarity=0.420 Sum_probs=80.0
Q ss_pred CCccccCCCCCCCccccCCCcccCCCCCCCCCCCcCC------CCCCCcc---------------------chhhHHHH-
Q 006056 93 NGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDG------KVKCPNT---------------------CWEAGKVA- 144 (663)
Q Consensus 93 ~~~f~C~n~g~~~~~Ip~s~VcDg~cDCcDGSDE~~~------~~~C~n~---------------------C~e~g~~~- 144 (663)
++.|+|-++. ...||.++|||++|||+|||||+++ .|+|.|. |++...+.
T Consensus 35 ~~~f~Cl~~~--~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE~~ 112 (176)
T PF12999_consen 35 NGKFTCLDGS--KIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDESG 112 (176)
T ss_pred CCceEecCCC--CceecHHHccCcceeCCCCCCccccccCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCCCC
Confidence 4579999873 2349999999999999999999874 5788876 88888872
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006056 145 ---RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKE 202 (663)
Q Consensus 145 ---r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke 202 (663)
...+.+..+.++..++.+.+.+..|.++|.++..+ .++.+.+++.++++|+.++.
T Consensus 113 ~~C~N~C~e~~~~~~~~~~~~~~~~~~G~~~r~~~i~~---a~~~~~e~~~~l~~l~~ei~ 170 (176)
T PF12999_consen 113 GKCPNTCAELGKEYREELEEEEEIYKEGLKIRQELIEE---AKKKREELEKKLEELEKEIQ 170 (176)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 24588888899999999999999999988887665 34444455555555555444
No 6
>PF07915 PRKCSH: Glucosidase II beta subunit-like protein; InterPro: IPR012913 The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II (P14314 from SWISSPROT), which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyses the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing []. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum []. Mutations in the gene coding for PRKCSH have been found to be involved in the development of autosomal dominant polycystic liver disease (ADPLD), but the precise role the protein has in the pathogenesis of this disease is unknown []. ; PDB: 3AIH_A.
Probab=99.00 E-value=2.6e-10 Score=97.82 Aligned_cols=53 Identities=26% Similarity=0.553 Sum_probs=38.9
Q ss_pred cceEEeecCeEEEEeecCCceeecc------CCCceeecccc-----ccC-----------------CCeeEEEecCCcc
Q 006056 544 GHCFESKQNKYVYKVCPYKKATQEE------GHSTTRLGSWD-----KFE-----------------DSYHIMLFSNGDK 595 (663)
Q Consensus 544 ~~C~~~~~g~YtYelC~~~~v~Q~~------g~~~~~LG~~~-----~~~-----------------~~y~~m~y~~G~~ 595 (663)
|.|+.+..|||+|+|||+++|+|+| ....++||+|. .|. ..|+.|.|+||+.
T Consensus 1 ~~C~~~~~g~WtYe~C~g~~v~QfH~~~~~~~~~~~~LG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~y~~Gt~ 80 (81)
T PF07915_consen 1 GQCLYRSEGWWTYEFCYGKHVRQFHEEEKDKPGQEYSLGRFDNESHFSWRDSNVDSSPPTRKSEDGSQRYISQVYSNGTI 80 (81)
T ss_dssp --EEEEEETTEEEEEETTTEEEEE-EETTEE-S--EEEEEE--EEEEEEE----------S-------EEEEEEEEE-SB
T ss_pred CcceecCCCEEEEEECCCCcEEEecccCCCCCcceEEeeeEecccchhhhccccccCccccccccCCccEEEEEeCCCcC
Confidence 5799999999999999999999997 33567999992 231 1589999999999
Q ss_pred C
Q 006056 596 C 596 (663)
Q Consensus 596 C 596 (663)
|
T Consensus 81 C 81 (81)
T PF07915_consen 81 C 81 (81)
T ss_dssp -
T ss_pred C
Confidence 9
No 7
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.41 E-value=1.3e-07 Score=69.60 Aligned_cols=32 Identities=31% Similarity=0.649 Sum_probs=29.5
Q ss_pred CCceecCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 006056 55 SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (663)
Q Consensus 55 ~~~F~C~~gs~~Ip~s~vcDg~cDC~DGSDE~g 87 (663)
.+.|+|.++ .|||.+++|||..||+|||||.+
T Consensus 3 ~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~ 34 (35)
T cd00112 3 PNEFRCANG-RCIPSSWVCDGEDDCGDGSDEEN 34 (35)
T ss_pred CCeEEcCCC-CeeCHHHcCCCccCCCCCccccc
Confidence 468999996 79999999999999999999975
No 8
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.38 E-value=1.7e-07 Score=69.98 Aligned_cols=33 Identities=33% Similarity=0.715 Sum_probs=30.0
Q ss_pred CCCceecCCCCCcccCCCCCCCCCCCCCCCCCCC
Q 006056 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPG 87 (663)
Q Consensus 54 ~~~~F~C~~gs~~Ip~s~vcDg~cDC~DGSDE~g 87 (663)
..+.|.|.++. |||.++||||+.||+|||||.+
T Consensus 4 ~~~~f~C~~~~-CI~~~~~CDg~~DC~dgsDE~~ 36 (37)
T PF00057_consen 4 PPGEFRCGNGQ-CIPKSWVCDGIPDCPDGSDEQN 36 (37)
T ss_dssp STTEEEETTSS-EEEGGGTTSSSCSSSSSTTTSS
T ss_pred cCCeeEcCCCC-EEChHHcCCCCCCCCCCccccc
Confidence 36789999985 9999999999999999999965
No 9
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=98.30 E-value=3.9e-07 Score=67.99 Aligned_cols=34 Identities=56% Similarity=0.883 Sum_probs=31.7
Q ss_pred CCCCCccccCCCCCCCccccCCCcccCCCCCCCCCCCc
Q 006056 90 ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEY 127 (663)
Q Consensus 90 aC~~~~f~C~n~g~~~~~Ip~s~VcDg~cDCcDGSDE~ 127 (663)
.|+.+.|.|.++ .|||.+++|||+.||.|||||.
T Consensus 2 ~C~~~~f~C~~~----~CI~~~~~CDg~~DC~dgsDE~ 35 (37)
T PF00057_consen 2 TCPPGEFRCGNG----QCIPKSWVCDGIPDCPDGSDEQ 35 (37)
T ss_dssp SSSTTEEEETTS----SEEEGGGTTSSSCSSSSSTTTS
T ss_pred cCcCCeeEcCCC----CEEChHHcCCCCCCCCCCcccc
Confidence 588899999997 5999999999999999999995
No 10
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=98.29 E-value=2.8e-07 Score=67.83 Aligned_cols=33 Identities=55% Similarity=0.797 Sum_probs=30.7
Q ss_pred CCCCccccCCCCCCCccccCCCcccCCCCCCCCCCCc
Q 006056 91 CPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEY 127 (663)
Q Consensus 91 C~~~~f~C~n~g~~~~~Ip~s~VcDg~cDCcDGSDE~ 127 (663)
|+.+.|.|.++ .|||.+++|||+.||.|||||.
T Consensus 1 C~~~~f~C~~~----~Ci~~~~~CDg~~DC~dgsDE~ 33 (35)
T cd00112 1 CPPNEFRCANG----RCIPSSWVCDGEDDCGDGSDEE 33 (35)
T ss_pred CCCCeEEcCCC----CeeCHHHcCCCccCCCCCcccc
Confidence 67789999995 8999999999999999999996
No 11
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.17 E-value=9.7e-07 Score=64.10 Aligned_cols=32 Identities=56% Similarity=0.964 Sum_probs=29.4
Q ss_pred CCCCccccCCCCCCCccccCCCcccCCCCCCCCCCC
Q 006056 91 CPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDE 126 (663)
Q Consensus 91 C~~~~f~C~n~g~~~~~Ip~s~VcDg~cDCcDGSDE 126 (663)
|+...|+|.++ .|||.+++|||+.||.|||||
T Consensus 2 C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNG----RCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCC----CEECchhhCCCcCcCcCCCCC
Confidence 66679999976 699999999999999999998
No 12
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.12 E-value=1.6e-06 Score=62.99 Aligned_cols=29 Identities=31% Similarity=0.686 Sum_probs=27.0
Q ss_pred CceecCCCCCcccCCCCCCCCCCCCCCCCC
Q 006056 56 NTIKCKDGSKKFAKTQLNDDYCDCPDGTDE 85 (663)
Q Consensus 56 ~~F~C~~gs~~Ip~s~vcDg~cDC~DGSDE 85 (663)
..|.|.++ .|||..++|||+.||+|||||
T Consensus 5 ~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 5 GEFQCDNG-RCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence 48999977 599999999999999999998
No 13
>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]
Probab=97.84 E-value=3.2e-05 Score=85.80 Aligned_cols=105 Identities=21% Similarity=0.266 Sum_probs=72.6
Q ss_pred ccccCCCCCCCccccCCCcccCCCCCCCCCCCcCC------CCCCCcc------------------chhhHHHHHH----
Q 006056 95 KFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEYDG------KVKCPNT------------------CWEAGKVARD---- 146 (663)
Q Consensus 95 ~f~C~n~g~~~~~Ip~s~VcDg~cDCcDGSDE~~~------~~~C~n~------------------C~e~g~~~r~---- 146 (663)
.|.|.++ ...|+++++||++|||.|||||+++ .|+|.|+ |++++.+|--
T Consensus 44 ~~~CLdg---s~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~Sgv~c 120 (480)
T KOG2397|consen 44 MFKCLDG---SKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLSGVDC 120 (480)
T ss_pred ceeeccC---CcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechhccCcccccccCCCCccCCCCC
Confidence 5788887 4789999999999999999999764 2445443 8888888764
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 147 --KLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIE 205 (663)
Q Consensus 147 --~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e 205 (663)
.+.++.+..+.-++........|...|.++..+-. ..+.+.+..+..|...+..++
T Consensus 121 ~ntC~e~gR~~r~~~~~~~~~yk~G~e~R~~~i~e~k---~~~~~~e~~l~~l~~e~~~l~ 178 (480)
T KOG2397|consen 121 PNTCIELGRAARIMLEKDAEIYKPGKEIREELLDESK---TAREAFEAPLDKLSDELKVLE 178 (480)
T ss_pred cchHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhccc---ccchhhhcchhhhhhHHhhcc
Confidence 47777777777777777777888888877765533 333334444444444444333
No 14
>PF02157 Man-6-P_recep: Mannose-6-phosphate receptor; PDB: 2RLB_A 3K42_A 2RL9_A 3K43_A 1C39_A 1M6P_A 3CY4_A 1KEO_B 2RL7_D 2RL8_B ....
Probab=97.45 E-value=0.00018 Score=75.47 Aligned_cols=102 Identities=20% Similarity=0.411 Sum_probs=63.4
Q ss_pred hhhhhccceEEeecC----eEEEEe--ecC--C-----ceeecc--CCCceeecccccc---CC-CeeEEEecCCccCCC
Q 006056 538 EFYSFYGHCFESKQN----KYVYKV--CPY--K-----KATQEE--GHSTTRLGSWDKF---ED-SYHIMLFSNGDKCWN 598 (663)
Q Consensus 538 ~~~~L~~~C~~~~~g----~YtYel--C~~--~-----~v~Q~~--g~~~~~LG~~~~~---~~-~y~~m~y~~G~~CwN 598 (663)
-|.||.++=|....+ .|+|.| |-- . -+.|.. .+..++||+++.- .. +-+.+.|.+|+.+-+
T Consensus 52 ~l~pl~~~~f~~~~~~g~d~ytY~f~vC~~v~~~ss~~G~vq~d~~t~K~~vIG~~n~T~vf~G~kwvmltY~gGd~yd~ 131 (278)
T PF02157_consen 52 RLEPLFNKSFESTVGQGSDNYTYIFRVCRDVGNNSSGAGLVQIDKKTGKYTVIGRYNSTPVFRGSKWVMLTYKGGDKYDS 131 (278)
T ss_dssp HTGGGTT-EEEEEESSTTSEEEEEEESSS--SSSSSTEEEEEEETTTTEEEEEEEEEEEEEEEESSEEEEEEEEEEB-SS
T ss_pred hcccccCCceEeeecccCcceEEEEEEeccCCCCCCcceEEEecCCCCceEEEEeeeeeEEecCceEEEEEcCCCCccCC
Confidence 366777776665443 466654 541 1 234555 2346799999863 22 345567999988743
Q ss_pred ---CCCceeEEEEEeCCCC---ceee----ecCCCccEEEEEEecccCCCc
Q 006056 599 ---GPDRSMKVRLRCGLKN---EVTD----VDEPSRCEYVALLYTPAVCSE 639 (663)
Q Consensus 599 ---Gp~Rst~V~l~Cg~~~---~i~s----V~Ep~kC~Y~~~~~TPa~C~~ 639 (663)
...|++.|+|.|.... .+.. +.-+.-|-|.|++.||++|..
T Consensus 132 ~~~~~~Rka~i~~tCdrd~~~~~~~~vse~~g~~~~C~Y~FEv~S~~AC~~ 182 (278)
T PF02157_consen 132 HCGKERRKAIIMFTCDRDTLAGNFTVVSEFVGKPNDCFYFFEVRSSHACPP 182 (278)
T ss_dssp SGGG-BEEEEEEEEE-TT-SSEEEEEEEEEETSSSEEEEEEEEEEGGG---
T ss_pred ccccccceeEEEEEEcCCCCccccceeeeecCCccceEEEEEecchhcCcC
Confidence 4569999999999853 2333 455899999999999999964
No 15
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.85 E-value=0.00086 Score=80.91 Aligned_cols=83 Identities=28% Similarity=0.424 Sum_probs=66.8
Q ss_pred CCCCCCcccccCC---CCceecCCCCCcccCCCCCCCCCCCCCCCCCC--CCC--CCCCCccccCCCCCCCccccCCCcc
Q 006056 42 GISPQDENYYKTS---SNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEP--GTS--ACPNGKFYCQNAGHSPLMIFSSKVN 114 (663)
Q Consensus 42 Gv~~~~~~~y~~~---~~~F~C~~gs~~Ip~s~vcDg~cDC~DGSDE~--gt~--aC~~~~f~C~n~g~~~~~Ip~s~Vc 114 (663)
|..+.....|-+. ...|.|..++.||+.+++|||..||.+++||- .+. +|....|.|.++ .|++...+|
T Consensus 204 ~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~----~~~~~~~~~ 279 (877)
T KOG1215|consen 204 DYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADG----DCSDRQKLC 279 (877)
T ss_pred ccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCC----CCccceEEe
Confidence 3344444444322 46789988779999999999999999999994 332 688889999876 899999999
Q ss_pred cCCCCCCCCCCCcC
Q 006056 115 DGICDCCDGSDEYD 128 (663)
Q Consensus 115 Dg~cDCcDGSDE~~ 128 (663)
||..||+||+||-.
T Consensus 280 ~g~~d~pdg~de~~ 293 (877)
T KOG1215|consen 280 DGDLDCPDGLDEDY 293 (877)
T ss_pred cCccCCCCcccccc
Confidence 99999999999963
No 16
>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]
Probab=96.52 E-value=0.0015 Score=78.77 Aligned_cols=71 Identities=35% Similarity=0.612 Sum_probs=55.9
Q ss_pred CCCceecCCC-CCcccCCCCCCCCCCCCCCCCCCCCCC------------------------CC----------------
Q 006056 54 SSNTIKCKDG-SKKFAKTQLNDDYCDCPDGTDEPGTSA------------------------CP---------------- 92 (663)
Q Consensus 54 ~~~~F~C~~g-s~~Ip~s~vcDg~cDC~DGSDE~gt~a------------------------C~---------------- 92 (663)
....|.|..+ .+|||..|.|||..||+||+||..+.. |.
T Consensus 139 ~~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~ 218 (877)
T KOG1215|consen 139 CLDKFSCRTGSCKCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDS 218 (877)
T ss_pred cCCCCCCcCccccCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccCCc
Confidence 3568999842 489999999999999999999987641 11
Q ss_pred -CCccccCCCCCCCccccCCCcccCCCCCCCCCCCc
Q 006056 93 -NGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEY 127 (663)
Q Consensus 93 -~~~f~C~n~g~~~~~Ip~s~VcDg~cDCcDGSDE~ 127 (663)
...|+|... ..||..+++|||..||-|++||.
T Consensus 219 ~~~~~~c~g~---~~~i~~~~~~Dg~~dc~~~~de~ 251 (877)
T KOG1215|consen 219 RIEVTRCDGS---SRCILISEVCDGPRDCVDGPDEG 251 (877)
T ss_pred ceeEEEecCC---CcEEeehhccCCCcccccCCcCc
Confidence 123445443 37999999999999999999984
No 17
>PF00878 CIMR: Cation-independent mannose-6-phosphate receptor repeat; InterPro: IPR000479 The cation-independent mannose-6-phosphate receptor is a type I membrane protein responsible for transport of phosphorylated lysosomal enzymes from the golgi complex and the cell surface to lysosomes. Lysosomal enzymes bearing phosphomannosyl residues bind specifically to mannose-6-phosphate receptors in the golgi apparatus and the resulting receptor-ligand complex is transported to an acidic prelysosomal compartment where the low pH mediates the dissociation of the complex. This receptor also binds insulin growth factor. It contains 15 copies of a repeat.; GO: 0005215 transporter activity, 0006810 transport, 0005737 cytoplasm, 0016021 integral to membrane; PDB: 1SYO_A 1SZ0_A 1Q25_A 2KVB_A 2KVA_A 2L2G_A 2V5O_A 1GP0_A 1GP3_A 1E6F_B ....
Probab=96.24 E-value=0.0032 Score=59.69 Aligned_cols=40 Identities=30% Similarity=0.473 Sum_probs=34.2
Q ss_pred CCCceeEEEEEeCCC---CceeeecCCCccEEEEEEecccCCC
Q 006056 599 GPDRSMKVRLRCGLK---NEVTDVDEPSRCEYVALLYTPAVCS 638 (663)
Q Consensus 599 Gp~Rst~V~l~Cg~~---~~i~sV~Ep~kC~Y~~~~~TPa~C~ 638 (663)
|-+|+|.|.|.|... ...+-+.|...|+|.|.+.||+||.
T Consensus 1 ~~~rst~I~F~C~~~~~~~~P~~~~~~~~C~y~f~W~T~~AC~ 43 (145)
T PF00878_consen 1 GYKRSTTIIFVCDPGAGSGSPVFVSEDDSCTYVFEWRTPLACP 43 (145)
T ss_dssp SBEEEEEEEEEE-SSSSTTEEEEEEEETTTEEEEEEEEGGGSS
T ss_pred CceEEEEEEEEeCCCCCCCCCEEEEecCCeEEEEEEEehhcCc
Confidence 568999999999874 4677778877999999999999998
No 18
>KOG3394 consensus Protein OS-9 [General function prediction only]
Probab=95.58 E-value=0.0057 Score=68.80 Aligned_cols=96 Identities=15% Similarity=0.165 Sum_probs=75.2
Q ss_pred cceEEeecCeEEEEeecCC-ceeecc---CC--Cceeeccccc-----cCC-----------------CeeEEEecCCcc
Q 006056 544 GHCFESKQNKYVYKVCPYK-KATQEE---GH--STTRLGSWDK-----FED-----------------SYHIMLFSNGDK 595 (663)
Q Consensus 544 ~~C~~~~~g~YtYelC~~~-~v~Q~~---g~--~~~~LG~~~~-----~~~-----------------~y~~m~y~~G~~ 595 (663)
..|+....|||.|++|+.. ++.|+| +. -...||.|.. |.. .-+.|.|++|.+
T Consensus 347 ~~~l~~g~~~~~~ef~~~~~~~~qyhe~~ds~~~e~~i~~~~~e~~~el~~~~s~~~~a~~~~~~~~~~~i~~~~~k~~~ 426 (502)
T KOG3394|consen 347 TTCLKGGIGWRKYEFCYGEDHVNQYHEEIDSEEAEIIIQEYLIELDIELLKKNSKRIAAAKALGNTTVSSIEHEEEKENH 426 (502)
T ss_pred ceeccCCcceeccceeeccchhheeeeeccccchhhhhhhhhhcccHHHHhccChhHHHHHHhhccccccHHHHhhcCCh
Confidence 4699999999999999998 999998 22 2335677664 311 235678999999
Q ss_pred C-CCCCCceeEEEEEeCCCC-c--e--eeecCCCccEEEEEEecccCCCc
Q 006056 596 C-WNGPDRSMKVRLRCGLKN-E--V--TDVDEPSRCEYVALLYTPAVCSE 639 (663)
Q Consensus 596 C-wNGp~Rst~V~l~Cg~~~-~--i--~sV~Ep~kC~Y~~~~~TPa~C~~ 639 (663)
| -.+-+|++.|.+.|-+.. . . .---||-.|.|.+.+.+|-+|.-
T Consensus 427 ~~~~~~~~~v~v~lk~~~s~~~~~~v~~y~l~~~~~~~il~~~~~~i~~~ 476 (502)
T KOG3394|consen 427 ELQPNVDREVAVKLKLKPSLNSDNAVPQYNLEPMSCQYILGVESRDICEL 476 (502)
T ss_pred hccCCCCceeeeeccCCCCCCCcccchhhhcccccceeeecccCCchhhh
Confidence 9 678899999999998832 2 2 23368999999999999999964
No 19
>KOG4504 consensus Cation-independent mannose-6-phosphate receptor CI-MPR [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=0.086 Score=56.15 Aligned_cols=57 Identities=14% Similarity=0.280 Sum_probs=48.5
Q ss_pred CCeeEEEecCCccCCCCCC-c-eeEEEEEeCCC----C-ceeeecCCCccEEEEEEecccCCCc
Q 006056 583 DSYHIMLFSNGDKCWNGPD-R-SMKVRLRCGLK----N-EVTDVDEPSRCEYVALLYTPAVCSE 639 (663)
Q Consensus 583 ~~y~~m~y~~G~~CwNGp~-R-st~V~l~Cg~~----~-~i~sV~Ep~kC~Y~~~~~TPa~C~~ 639 (663)
++.+.|.|.||..|.++.. | +|-+.|.|.++ + .|+.|---.+|.|-|++.||.||..
T Consensus 163 ~k~L~l~y~nGS~CP~~~~~~~~TlisFvC~~e~~~~~~~i~y~gnl~~Ct~FFew~tihACpt 226 (370)
T KOG4504|consen 163 NKRLQLVYKNGSPCPSKSGLSYKTLISFVCRPEAGPTNRPILYSGNLQTCTLFFEWHTIHACPT 226 (370)
T ss_pred cceEEEEecCCCcCCCCCCccceeeEEEEecCCCCCCCccEEEeccccceEEEEEecccccCcc
Confidence 3568999999999965533 4 89999999773 4 6899999999999999999999964
No 20
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=93.97 E-value=0.11 Score=54.80 Aligned_cols=52 Identities=15% Similarity=0.215 Sum_probs=44.5
Q ss_pred CeeEEEecCCccCCCCCCceeEEEEEeCCC---CceeeecCCCccEEEEEEecccCC
Q 006056 584 SYHIMLFSNGDKCWNGPDRSMKVRLRCGLK---NEVTDVDEPSRCEYVALLYTPAVC 637 (663)
Q Consensus 584 ~y~~m~y~~G~~CwNGp~Rst~V~l~Cg~~---~~i~sV~Ep~kC~Y~~~~~TPa~C 637 (663)
.++.+.|.+ .||++..|++.|.|.|.++ .++........|.|.+.+.||++|
T Consensus 117 ~Gl~l~l~G--~~~~~~~~~a~i~f~Cd~~~~~~~~~~~~~~~~~~l~l~~~t~~aC 171 (268)
T PF09451_consen 117 EGLRLKLKG--GKWGSNNQSAVIEFQCDKNASGPEGTSKVDWDGCVLRLEWKTKYAC 171 (268)
T ss_pred CCEEEEEeC--CCCCCceEEEEEEEEcCCCCCCCceeeeecCCCcEEEEEEeccccc
Confidence 378888888 8899999999999999884 344444778889999999999999
No 21
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=91.91 E-value=6.9 Score=39.46 Aligned_cols=40 Identities=40% Similarity=0.494 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 170 KQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEE 209 (663)
Q Consensus 170 ~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~~e~ 209 (663)
...+..+..++..|+.++..|+..+..++...+.+++...
T Consensus 119 e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 119 EQGKQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446777888888888888888888888888777766443
No 22
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=87.41 E-value=17 Score=37.35 Aligned_cols=81 Identities=23% Similarity=0.204 Sum_probs=53.2
Q ss_pred chhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 137 CWEAGKVARDKLKKKIATYQE--GVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQ 214 (663)
Q Consensus 137 C~e~g~~~r~~~~~~~~~~~~--G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~~e~~er~~ 214 (663)
|.-+..+.|.....-+.+|.. ++-.|+.+. |...+..+..+++.|+.++.+|+.++.+++.+.+..+..++.++.-
T Consensus 151 l~rvRDEIrMt~aAYqtlyeSsvAfGmRKALq--ae~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~i 228 (259)
T KOG4001|consen 151 LVRVRDEIRMTFAAYQTLYESSVAFGMRKALQ--AENEKTRATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEEREI 228 (259)
T ss_pred EEEehHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 444455666655555555544 333455543 4455566677888899999999999999999988877766655555
Q ss_pred HHHHH
Q 006056 215 REKEE 219 (663)
Q Consensus 215 ~~k~~ 219 (663)
.+|.-
T Consensus 229 eEkk~ 233 (259)
T KOG4001|consen 229 EEKKM 233 (259)
T ss_pred HHHHH
Confidence 44443
No 23
>KOG3509 consensus Basement membrane-specific heparan sulfate proteoglycan (HSPG) core protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.60 E-value=2.9 Score=51.33 Aligned_cols=72 Identities=28% Similarity=0.410 Sum_probs=61.6
Q ss_pred CCCceecCCCCCcccCCCCCCCCCCCCCCCCCCCCC------CCCCCccccCCCCCCCccccCCCcccCCCCCCCCCCCc
Q 006056 54 SSNTIKCKDGSKKFAKTQLNDDYCDCPDGTDEPGTS------ACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDGSDEY 127 (663)
Q Consensus 54 ~~~~F~C~~gs~~Ip~s~vcDg~cDC~DGSDE~gt~------aC~~~~f~C~n~g~~~~~Ip~s~VcDg~cDCcDGSDE~ 127 (663)
.+..|.|.++ ++.-..++||...+|..+++..++. .|.++.+.|.+- -.+.+.+.-|||..||.|++++.
T Consensus 33 ~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~---~~~~~~~~~~~g~~~~~~~~~~~ 108 (964)
T KOG3509|consen 33 SPNEFKCNNP-RCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDR---LRCNPQSFQCDGTNDCKDGSDEV 108 (964)
T ss_pred CcchhccCCc-cccCchhhhccccccCCCCCcCCccccccccccCCcccccccc---hhcCCccccccCCCCCCccchhc
Confidence 4677888888 7999999999999999999777753 477889999985 47889999999999999999997
Q ss_pred CC
Q 006056 128 DG 129 (663)
Q Consensus 128 ~~ 129 (663)
..
T Consensus 109 ~~ 110 (964)
T KOG3509|consen 109 GC 110 (964)
T ss_pred cc
Confidence 63
No 24
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=70.52 E-value=11 Score=36.33 Aligned_cols=41 Identities=24% Similarity=0.532 Sum_probs=20.0
Q ss_pred CceecCCCCCcccCCCCCCCCCCCCC-CCCCCCCCC----CCCCcccc
Q 006056 56 NTIKCKDGSKKFAKTQLNDDYCDCPD-GTDEPGTSA----CPNGKFYC 98 (663)
Q Consensus 56 ~~F~C~~gs~~Ip~s~vcDg~cDC~D-GSDE~gt~a----C~~~~f~C 98 (663)
..+-|......-|...-|.+ .|-| ++|..+|.+ |+.+..-|
T Consensus 56 ~~~iC~~~~~~~~~~~CC~~--~Cvdv~~d~~nCG~Cg~~C~~g~~cC 101 (136)
T PF04885_consen 56 DPWICSAKGKCSPGPTCCNN--KCVDVSSDRNNCGACGNKCPYGQTCC 101 (136)
T ss_pred CchhhcCCCCCCCCCcccCC--cCCccCCCccccHhhcCCCCCCceec
Confidence 44556543323333334444 4555 567777653 55544434
No 25
>PF06919 Phage_T4_Gp30_7: Phage Gp30.7 protein; InterPro: IPR009690 This family consists of several phage Gp30.7 proteins of 121 residues in length. Family members seem to be exclusively from the T4-like viruses. The function of this family is unknown.
Probab=66.55 E-value=2.5 Score=38.86 Aligned_cols=15 Identities=40% Similarity=1.035 Sum_probs=12.0
Q ss_pred ccCCCCCCceeEEEE
Q 006056 594 DKCWNGPDRSMKVRL 608 (663)
Q Consensus 594 ~~CwNGp~Rst~V~l 608 (663)
..||||.+|.+-|++
T Consensus 79 HPcwnG~nRk~Lvk~ 93 (121)
T PF06919_consen 79 HPCWNGVNRKLLVKT 93 (121)
T ss_pred CcCccCcchhhHHHH
Confidence 579999999887643
No 26
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=62.10 E-value=1.7e+02 Score=35.52 Aligned_cols=13 Identities=8% Similarity=-0.092 Sum_probs=7.0
Q ss_pred hhHHHHHHHhHhh
Q 006056 236 SGEKAMQEKNKAE 248 (663)
Q Consensus 236 ~~~~~~~~~~~~~ 248 (663)
.+.+..+++|.++
T Consensus 612 aEtriKldLfsaL 624 (697)
T PF09726_consen 612 AETRIKLDLFSAL 624 (697)
T ss_pred HHHHHHHHHHHHH
Confidence 4555555666555
No 27
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=61.99 E-value=1.3e+02 Score=37.02 Aligned_cols=59 Identities=15% Similarity=0.103 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 148 LKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 148 ~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
.+...+.+......-.++|+.....+.+++.+..+++..+.+++...++++.+++.+++
T Consensus 504 i~~A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 562 (782)
T PRK00409 504 IEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQE 562 (782)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555556666666666666666666666666666666666665555444
No 28
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=58.44 E-value=1.1e+02 Score=27.44 Aligned_cols=29 Identities=34% Similarity=0.443 Sum_probs=21.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006056 174 VKDEAELSNLKNEEKILKGLVQQLKERKE 202 (663)
Q Consensus 174 ~e~~~~l~~L~~e~~~le~~~~~l~~~ke 202 (663)
..|++++..|+.++..+...+++|+.+++
T Consensus 45 ~rwek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 45 ARWEKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888777777777777655
No 29
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=57.77 E-value=1.7e+02 Score=35.77 Aligned_cols=55 Identities=18% Similarity=0.062 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 152 IATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 152 ~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
.+.+...-..-.++|+.-...+.+++.+..+++..+.+++...++|+.+++++++
T Consensus 503 ~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~ 557 (771)
T TIGR01069 503 KTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557 (771)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455556655556666665555555555555555555555554444
No 30
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.61 E-value=47 Score=27.78 Aligned_cols=30 Identities=30% Similarity=0.377 Sum_probs=14.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006056 175 KDEAELSNLKNEEKILKGLVQQLKERKEQI 204 (663)
Q Consensus 175 e~~~~l~~L~~e~~~le~~~~~l~~~ke~~ 204 (663)
.+..++..|+.++..++.+.++|+.+.+.+
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555555555444433
No 31
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=52.86 E-value=2.3e+02 Score=34.80 Aligned_cols=7 Identities=14% Similarity=0.216 Sum_probs=2.6
Q ss_pred CccccCC
Q 006056 105 PLMIFSS 111 (663)
Q Consensus 105 ~~~Ip~s 111 (663)
|..+|.-
T Consensus 268 P~tlP~E 274 (1118)
T KOG1029|consen 268 PKTLPPE 274 (1118)
T ss_pred CCCCChh
Confidence 3333333
No 32
>PRK11637 AmiB activator; Provisional
Probab=52.75 E-value=3.7e+02 Score=30.24 Aligned_cols=10 Identities=20% Similarity=0.265 Sum_probs=4.8
Q ss_pred cceEEeecCe
Q 006056 544 GHCFESKQNK 553 (663)
Q Consensus 544 ~~C~~~~~g~ 553 (663)
|.++-..+|.
T Consensus 360 G~~vii~hg~ 369 (428)
T PRK11637 360 GLVVVVEHGK 369 (428)
T ss_pred ccEEEEEeCC
Confidence 4455555443
No 33
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=51.74 E-value=3.8e+02 Score=32.97 Aligned_cols=25 Identities=32% Similarity=0.372 Sum_probs=9.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 006056 177 EAELSNLKNEEKILKGLVQQLKERK 201 (663)
Q Consensus 177 ~~~l~~L~~e~~~le~~~~~l~~~k 201 (663)
++.+.+++..+..++.+.++++.++
T Consensus 535 ~~~~~e~~~~~~~l~~~~~~l~~~~ 559 (771)
T TIGR01069 535 EKLLKEQEKLKKELEQEMEELKERE 559 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333334444444443333
No 34
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=49.77 E-value=96 Score=37.87 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=20.1
Q ss_pred EecCCccC----CCCCCceeEEEEEeCCCCce
Q 006056 589 LFSNGDKC----WNGPDRSMKVRLRCGLKNEV 616 (663)
Q Consensus 589 ~y~~G~~C----wNGp~Rst~V~l~Cg~~~~i 616 (663)
+=+.|+.= -||.-|.-.+.+.||...-|
T Consensus 710 ieG~GtTIDViLvNG~L~eGD~IvvcG~~GpI 741 (1064)
T KOG1144|consen 710 IEGHGTTIDVILVNGELHEGDQIVVCGLQGPI 741 (1064)
T ss_pred ecCCCceEEEEEEcceeccCCEEEEcCCCCch
Confidence 34455554 58888999999999986544
No 35
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=46.33 E-value=1.1e+02 Score=32.52 Aligned_cols=55 Identities=16% Similarity=0.215 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006056 141 GKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKE 202 (663)
Q Consensus 141 g~~~r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke 202 (663)
..+|++.+++-...+++-...|+... .+++.++..|+++...|..+|++|+.+..
T Consensus 192 ~~~y~err~rNN~A~~kSR~~~k~~~-------~e~~~r~~~leken~~lr~~v~~l~~el~ 246 (269)
T KOG3119|consen 192 DPEYKERRRRNNEAVRKSRDKRKQKE-------DEMAHRVAELEKENEALRTQVEQLKKELA 246 (269)
T ss_pred CHHHHHHHHhhhHHHHHhhhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544444444444444444433 44445555566665556555555555544
No 36
>PRK10884 SH3 domain-containing protein; Provisional
Probab=46.21 E-value=2.5e+02 Score=28.87 Aligned_cols=32 Identities=19% Similarity=0.083 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006056 171 QNLVKDEAELSNLKNEEKILKGLVQQLKERKE 202 (663)
Q Consensus 171 ~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke 202 (663)
....+++.+++.++..+.+|+.+-.+|+.+..
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~ 149 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLI 149 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555554444444433
No 37
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=46.19 E-value=4.2e+02 Score=32.58 Aligned_cols=29 Identities=21% Similarity=0.256 Sum_probs=11.7
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006056 174 VKDEAELSNLKNEEKILKGLVQQLKERKE 202 (663)
Q Consensus 174 ~e~~~~l~~L~~e~~~le~~~~~l~~~ke 202 (663)
.+++..+.+++.....++.+.++++.+++
T Consensus 537 ~~~~~~~~e~~~~~~~l~~~~~~l~~~~~ 565 (782)
T PRK00409 537 EEAEALLKEAEKLKEELEEKKEKLQEEED 565 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333344444444444444444333
No 38
>PRK11637 AmiB activator; Provisional
Probab=45.03 E-value=5e+02 Score=29.23 Aligned_cols=45 Identities=20% Similarity=0.319 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 162 RKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 162 R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
+..++.+-...+.++......|+..+..++..+.+++.++..++.
T Consensus 168 d~~~l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~ 212 (428)
T PRK11637 168 RQETIAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQ 212 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555555555555555555555544444
No 39
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=43.68 E-value=3.9e+02 Score=32.89 Aligned_cols=17 Identities=24% Similarity=0.491 Sum_probs=8.7
Q ss_pred CCCceecCC-CCCcccCC
Q 006056 54 SSNTIKCKD-GSKKFAKT 70 (663)
Q Consensus 54 ~~~~F~C~~-gs~~Ip~s 70 (663)
+.....|.- .++-|++.
T Consensus 661 Gt~FiRCiKPN~kM~~~~ 678 (1259)
T KOG0163|consen 661 GTHFIRCIKPNSKMIDRH 678 (1259)
T ss_pred CCeeEEeecCcccccccc
Confidence 344556763 34555554
No 40
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=42.07 E-value=1.9e+02 Score=28.99 Aligned_cols=38 Identities=26% Similarity=0.210 Sum_probs=26.0
Q ss_pred ccccCCCcccCCCCCCCCCCCcCCCCCCCccchhhHHHHHHHHHHHH
Q 006056 106 LMIFSSKVNDGICDCCDGSDEYDGKVKCPNTCWEAGKVARDKLKKKI 152 (663)
Q Consensus 106 ~~Ip~s~VcDg~cDCcDGSDE~~~~~~C~n~C~e~g~~~r~~~~~~~ 152 (663)
..||.-..|..+.||..+-.|.. .++.+.+...+.+..
T Consensus 57 l~ip~gl~N~S~~DC~k~dPe~~---------eEmeK~~~~LL~EEL 94 (176)
T PF06364_consen 57 LSIPPGLSNLSFTDCGKHDPEVS---------EEMEKNFVDLLSEEL 94 (176)
T ss_pred HHhcccccccchHhhccCChhhh---------HHHHhhHHHHHHHHH
Confidence 67888899999999988766653 455555554444433
No 41
>PF13956 Ibs_toxin: Toxin Ibs, type I toxin-antitoxin system
Probab=42.05 E-value=9.7 Score=24.56 Aligned_cols=16 Identities=19% Similarity=0.283 Sum_probs=11.3
Q ss_pred hHHHHHHHHHHHHHhh
Q 006056 8 FRFTYAIVLSLLWVSS 23 (663)
Q Consensus 8 ~~~~~~~~~~~~~~~~ 23 (663)
|+|+.+|+.||+|++.
T Consensus 2 Mk~vIIlvvLLliSf~ 17 (19)
T PF13956_consen 2 MKLVIILVVLLLISFP 17 (19)
T ss_pred ceehHHHHHHHhcccc
Confidence 6777777777777653
No 42
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=41.77 E-value=3.5e+02 Score=28.67 Aligned_cols=59 Identities=27% Similarity=0.396 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 148 LKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 148 ~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
++.+...+...+++-+..++.+.+....++.++..++.++..++..+..++.+++.++.
T Consensus 22 l~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~ 80 (239)
T COG1579 22 LEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEE 80 (239)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555666555666666666666666666666666666666666665554443
No 43
>PHA01750 hypothetical protein
Probab=41.53 E-value=1.1e+02 Score=26.15 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=28.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 006056 499 SDAARVRKEYDESSDKLSKIQSRISSLTQKLKH 531 (663)
Q Consensus 499 ~~~~~ar~~~~~~e~~l~~l~~~i~~~~~~L~~ 531 (663)
+++..+|.++.+......+++.++.+++.++.+
T Consensus 42 ~ELdNL~~ei~~~kikqDnl~~qv~eik~k~dk 74 (75)
T PHA01750 42 SELDNLKTEIEELKIKQDELSRQVEEIKRKLDK 74 (75)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcc
Confidence 668899999999999999999999999887753
No 44
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=40.80 E-value=30 Score=31.40 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHHhhcccccccccccCCCCCCCCCCCC
Q 006056 8 FRFTYAIVLSLLWVSSSVIGRSNAASSLLNDPFYGISPQ 46 (663)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~Gv~~~ 46 (663)
+.|..||+++|||+++..-+|-++.+...... ..|.+.
T Consensus 6 ~llL~l~LA~lLlisSevaa~~~~~~~~~~~~-~~v~~~ 43 (95)
T PF07172_consen 6 FLLLGLLLAALLLISSEVAARELEETEKEEEE-NEVQDD 43 (95)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHhhhccccccC-CCCCcc
Confidence 44445555555666665555555333333333 445444
No 45
>PTZ00121 MAEBL; Provisional
Probab=40.79 E-value=3.9e+02 Score=35.26 Aligned_cols=7 Identities=29% Similarity=0.410 Sum_probs=3.1
Q ss_pred EEEEeec
Q 006056 554 YVYKVCP 560 (663)
Q Consensus 554 YtYelC~ 560 (663)
+.|--|.
T Consensus 1991 ~eYynCm 1997 (2084)
T PTZ00121 1991 NEYYDCM 1997 (2084)
T ss_pred hHHHhhH
Confidence 3444454
No 46
>smart00030 CLb CLUSTERIN Beta chain.
Probab=40.48 E-value=3e+02 Score=28.44 Aligned_cols=48 Identities=21% Similarity=0.158 Sum_probs=31.3
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006056 135 NTCWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSN 182 (663)
Q Consensus 135 n~C~e~g~~~r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~ 182 (663)
+.-.++..+=...+.+.++.+-.|++.-+.++++.......+-..|++
T Consensus 7 ~~Lk~lS~~G~kyvd~EI~nAl~GvKqMK~~mer~~eeh~~ll~tLe~ 54 (206)
T smart00030 7 NELQEMSTQGSKYINKEIKNALKGVKQIKTLIEKTNKERKSLLSTLEE 54 (206)
T ss_pred hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 334455555555677777777788888888888777666666444333
No 47
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=39.32 E-value=1.8e+02 Score=33.37 Aligned_cols=46 Identities=17% Similarity=0.167 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006056 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKIL 190 (663)
Q Consensus 145 r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~l 190 (663)
.++..+.++.+-.|+|.-+.|+++-......+-+.|++.+++++++
T Consensus 11 ekyvdeEik~Al~GvKqMK~~Mek~eeeh~~Lm~tL~k~kk~KeeA 56 (436)
T PF01093_consen 11 EKYVDEEIKNALNGVKQMKTMMEKTEEEHKELMKTLEKSKKEKEEA 56 (436)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3446666777778999988888888877777766665555554443
No 48
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=38.80 E-value=4.4e+02 Score=26.88 Aligned_cols=45 Identities=18% Similarity=0.124 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006056 144 ARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (663)
Q Consensus 144 ~r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~ 188 (663)
....+.+|.+.+...+..=.+..++|.....+.+.++...+.+..
T Consensus 73 i~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~ 117 (205)
T PRK06231 73 TQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAK 117 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567777777777766666666677777777777666665543
No 49
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=38.64 E-value=2.2e+02 Score=30.93 Aligned_cols=24 Identities=33% Similarity=0.347 Sum_probs=9.3
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 006056 179 ELSNLKNEEKILKGLVQQLKERKE 202 (663)
Q Consensus 179 ~l~~L~~e~~~le~~~~~l~~~ke 202 (663)
+|..+..++..++..+.+++.++.
T Consensus 217 eL~~~~~~i~~~k~~l~el~~el~ 240 (325)
T PF08317_consen 217 ELAEQKEEIEAKKKELAELQEELE 240 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334444333
No 50
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=38.49 E-value=4.2e+02 Score=27.98 Aligned_cols=13 Identities=23% Similarity=0.161 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 006056 151 KIATYQEGVLLRK 163 (663)
Q Consensus 151 ~~~~~~~G~~~R~ 163 (663)
+..++++|++.=+
T Consensus 113 ~nAlvRAGLktL~ 125 (290)
T COG4026 113 KNALVRAGLKTLQ 125 (290)
T ss_pred HHHHHHHHHHHHh
Confidence 3355666666543
No 51
>PRK09039 hypothetical protein; Validated
Probab=37.98 E-value=5.3e+02 Score=28.47 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=15.8
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 174 VKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 174 ~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
.+...++..|+.+|..|+.++..|+.....++.
T Consensus 133 se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~ 165 (343)
T PRK09039 133 ARALAQVELLNQQIAALRRQLAALEAALDASEK 165 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555555555444444
No 52
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=35.50 E-value=4.4e+02 Score=25.90 Aligned_cols=43 Identities=12% Similarity=0.193 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006056 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEE 187 (663)
Q Consensus 145 r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~ 187 (663)
...+++|.+.+..++..=.+...++...+.+.+..+...+.+.
T Consensus 48 ~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA 90 (167)
T PRK08475 48 KNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKA 90 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666666666666666667777666666666665544
No 53
>PTZ00121 MAEBL; Provisional
Probab=34.65 E-value=6e+02 Score=33.73 Aligned_cols=14 Identities=29% Similarity=0.643 Sum_probs=6.4
Q ss_pred eEEeecCeEEEEeec
Q 006056 546 CFESKQNKYVYKVCP 560 (663)
Q Consensus 546 C~~~~~g~YtYelC~ 560 (663)
|.....+.=+|. ||
T Consensus 1996 Cmk~EF~dp~Y~-CF 2009 (2084)
T PTZ00121 1996 CMKEEFADKDYK-CF 2009 (2084)
T ss_pred hHHhhccCcchh-hh
Confidence 444444444442 55
No 54
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=34.57 E-value=3.6e+02 Score=25.82 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=20.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 173 LVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 173 ~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
|++++.+|+.|+.+...++.....|....+-+|.
T Consensus 27 RaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~ 60 (134)
T PF08232_consen 27 RAEMKARIAFLEGERRGQENLKKDLKRRIKMLEY 60 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666666666666666555444443
No 55
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=34.20 E-value=5.9e+02 Score=29.25 Aligned_cols=8 Identities=25% Similarity=-0.180 Sum_probs=3.0
Q ss_pred ccccCCCc
Q 006056 106 LMIFSSKV 113 (663)
Q Consensus 106 ~~Ip~s~V 113 (663)
.-|-..|+
T Consensus 249 aallLYWv 256 (429)
T PRK00247 249 TAIALYWV 256 (429)
T ss_pred HHHHHHHH
Confidence 33333443
No 56
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=33.69 E-value=1.2e+02 Score=25.34 Aligned_cols=29 Identities=14% Similarity=0.168 Sum_probs=15.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 006056 173 LVKDEAELSNLKNEEKILKGLVQQLKERK 201 (663)
Q Consensus 173 ~~e~~~~l~~L~~e~~~le~~~~~l~~~k 201 (663)
..+++.+|..|+.||..++..+...++.+
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666665555554444433
No 57
>PF08702 Fib_alpha: Fibrinogen alpha/beta chain family; InterPro: IPR012290 Fibrinogen plays key roles in both blood clotting and platelet aggregation. During blood clot formation, the conversion of soluble fibrinogen to insoluble fibrin is triggered by thrombin, resulting in the polymerisation of fibrin, which forms a soft clot; this is then converted to a hard clot by factor XIIIA, which cross-links fibrin molecules. Platelet aggregation involves the binding of the platelet protein receptor integrin alpha(IIb)-beta(3) to the C-terminal D domain of fibrinogen []. In addition to platelet aggregation, platelet-fibrinogen interaction mediates both adhesion and fibrin clot retraction. Fibrinogen occurs as a dimer, where each monomer is composed of three non-identical chains, alpha, beta and gamma, linked together by several disulphide bonds []. The N-terminals of all six chains come together to form the centre of the molecule (E domain), from which the monomers extend in opposite directions as coiled coils, followed by C-terminal globular domains (D domains). Therefore, the domain composition is: D-coil-E-coil-D. At each end, the C-terminal of the alpha chain extends beyond the D domain as a protuberance that is important for cross-linking the molecule. During clot formation, the N-terminal fragments of the alpha and beta chains (within the E domain) in fibrinogen are cleaved by thrombin, releasing fibrinopeptides A and B, respectively, and producing fibrin. This cleavage results in the exposure of four binding sites on the E domain, each of which can bind to a D domain from different fibrin molecules. The binding of fibrin molecules produces a polymer consisting of a lattice network of fibrins that form a long, branching, flexible fibre [, ]. Fibrin fibres interact with platelets to increase the size of the clot, as well as with several different proteins and cells, thereby promoting the inflammatory response and concentrating the cells required for wound repair at the site of damage. This entry represents the coiled-coil domain and part of the N-terminal E domain found in all three fibrinogen polypeptides, namely the alpha, beta and gamma chains. More information about these proteins can be found at Protein of the Month: Fibrinogen [].; GO: 0005102 receptor binding, 0030674 protein binding, bridging, 0007165 signal transduction, 0030168 platelet activation, 0051258 protein polymerization, 0005577 fibrinogen complex; PDB: 1LWU_D 1N73_D 1M1J_B 1JY2_R 1JY3_R 1RF0_A 2H43_D 1RE4_D 2XNY_D 2HPC_D ....
Probab=33.48 E-value=4e+02 Score=25.90 Aligned_cols=20 Identities=25% Similarity=0.881 Sum_probs=12.0
Q ss_pred CCCCCCCcCCCCCCCccchhhH
Q 006056 120 CCDGSDEYDGKVKCPNTCWEAG 141 (663)
Q Consensus 120 CcDGSDE~~~~~~C~n~C~e~g 141 (663)
||-..++|+. +||.+|.=.+
T Consensus 6 c~~~de~~G~--~CPTgC~i~~ 25 (146)
T PF08702_consen 6 CCCADEDFGS--YCPTGCGIQD 25 (146)
T ss_dssp EECSSTTTTE--EEE-HHHHHH
T ss_pred ccccCccccC--CCCCcchHHH
Confidence 4444455654 8999997644
No 58
>KOG2751 consensus Beclin-like protein [Signal transduction mechanisms]
Probab=33.45 E-value=5.8e+02 Score=29.32 Aligned_cols=68 Identities=26% Similarity=0.258 Sum_probs=33.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 137 CWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 137 C~e~g~~~r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
|.+-...-+.......+.+..-...-+++++......... ...++..+++.++...++|-++++.+++
T Consensus 137 C~eC~d~l~~~ld~e~~~~~~e~~~Y~~~l~~Le~~~~~~--~~~~~~~e~~~l~~eE~~L~q~lk~le~ 204 (447)
T KOG2751|consen 137 CEECMDVLLNKLDKEVEDAEDEVDTYKACLQRLEQQNQDV--SEEDLLKELKNLKEEEERLLQQLEELEK 204 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc--chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554455555555555555555555555555544433322 3344444444444444444444444444
No 59
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=33.14 E-value=1.3e+02 Score=26.73 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=10.4
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHH
Q 006056 179 ELSNLKNEEKILKGLVQQLKERKE 202 (663)
Q Consensus 179 ~l~~L~~e~~~le~~~~~l~~~ke 202 (663)
+|...+..+.+++..++.|++++.
T Consensus 9 eieK~k~Kiae~Q~rlK~Le~qk~ 32 (83)
T PF14193_consen 9 EIEKTKEKIAELQARLKELEAQKT 32 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444443
No 60
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=32.66 E-value=5.8e+02 Score=26.53 Aligned_cols=27 Identities=19% Similarity=0.184 Sum_probs=10.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 006056 173 LVKDEAELSNLKNEEKILKGLVQQLKE 199 (663)
Q Consensus 173 ~~e~~~~l~~L~~e~~~le~~~~~l~~ 199 (663)
..++..+...|..++..++.+++.|+.
T Consensus 44 id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 44 IDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333333
No 61
>PRK12704 phosphodiesterase; Provisional
Probab=32.62 E-value=8.7e+02 Score=28.46 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=16.4
Q ss_pred HHHHHHHhhccCCCCcChhh-HHHHHHHHHH
Q 006056 481 TVRNILQAVNLFQTPVDKSD-AARVRKEYDE 510 (663)
Q Consensus 481 ~~~~~l~~~~~~~~~~d~~~-~~~ar~~~~~ 510 (663)
.+...|...|++.| ..+.+ +..++..++.
T Consensus 268 ~~l~~l~~dg~i~P-~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 268 LALEKLVQDGRIHP-ARIEEMVEKARKEVDE 297 (520)
T ss_pred HHHHHHHhcCCcCC-CCHHHHHHHHHHHHHH
Confidence 33445566777554 44444 6777766653
No 62
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=32.48 E-value=5.8e+02 Score=27.84 Aligned_cols=36 Identities=25% Similarity=0.328 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 171 QNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 171 ~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
+...++.+++..|+.+...+..++..|+.+.+++.+
T Consensus 57 ~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~ 92 (314)
T PF04111_consen 57 QEEEELLQELEELEKEREELDQELEELEEELEELDE 92 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555555555555555555555444443
No 63
>PRK14161 heat shock protein GrpE; Provisional
Probab=32.18 E-value=3.3e+02 Score=27.48 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 165 EIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 165 li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
.+.-+++.....+.++..|+.++.+++.....+.+..+...+
T Consensus 13 ~~~~~~~~~~~~~~ei~~l~~e~~elkd~~lR~~AefeN~rk 54 (178)
T PRK14161 13 INDIAEEIVETANPEITALKAEIEELKDKLIRTTAEIDNTRK 54 (178)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555556666666666666555555555444433
No 64
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=32.08 E-value=1.1e+03 Score=29.40 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.5
Q ss_pred eecCCc
Q 006056 558 VCPYKK 563 (663)
Q Consensus 558 lC~~~~ 563 (663)
-|||..
T Consensus 1153 ri~F~~ 1158 (1259)
T KOG0163|consen 1153 RIPFMR 1158 (1259)
T ss_pred ecceec
Confidence 344443
No 65
>PF12958 DUF3847: Protein of unknown function (DUF3847); InterPro: IPR024215 This entry represents a family of uncharacterised proteins that were found by clustering human gut metagenomic sequences [].
Probab=31.66 E-value=1.4e+02 Score=26.73 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=13.5
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 006056 175 KDEAELSNLKNEEKILKGLVQQLKERKEQI 204 (663)
Q Consensus 175 e~~~~l~~L~~e~~~le~~~~~l~~~ke~~ 204 (663)
+++.++...+.++...+..++.|+.++..+
T Consensus 5 ~l~~e~e~~~~kl~q~e~~~k~L~nr~k~l 34 (86)
T PF12958_consen 5 ELQAEIEKAEKKLEQAEHKIKQLENRKKKL 34 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444433
No 66
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=31.40 E-value=5.9e+02 Score=26.13 Aligned_cols=44 Identities=18% Similarity=0.191 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 006056 160 LLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQ 203 (663)
Q Consensus 160 ~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~ 203 (663)
....+.++..+..+.+-+.+-.+|..++..|+..++.++.+...
T Consensus 98 ~tl~e~~en~K~~~e~tEer~~el~kklnslkk~~e~lr~el~k 141 (203)
T KOG3433|consen 98 ATLGESIENRKAGREETEERTDELTKKLNSLKKILESLRWELAK 141 (203)
T ss_pred hHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344566666666666666666777666666655555555443
No 67
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=30.53 E-value=5e+02 Score=25.05 Aligned_cols=42 Identities=17% Similarity=0.191 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006056 146 DKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEE 187 (663)
Q Consensus 146 ~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~ 187 (663)
..+.+|.+.+...+..=.+.-.++...+.+.+.++...+.+.
T Consensus 49 ~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea 90 (156)
T CHL00118 49 KVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEA 90 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666655555666666666666655555544
No 68
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=30.45 E-value=6.1e+02 Score=25.96 Aligned_cols=43 Identities=9% Similarity=0.115 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006056 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEE 187 (663)
Q Consensus 145 r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~ 187 (663)
...+++|.+.+...+..=.++..++..++.+.+..|.+.+.+.
T Consensus 79 ~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA 121 (204)
T PRK09174 79 GGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKA 121 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555555555555555544443
No 69
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=30.35 E-value=5.8e+02 Score=26.65 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 164 KEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 164 ~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
.+..++...+..++..+..++..+..+...+..|+.....++.
T Consensus 85 ~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~ 127 (225)
T COG1842 85 DLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQ 127 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555566666666666665555555555555444333
No 70
>KOG2412 consensus Nuclear-export-signal (NES)-containing protein/polyadenylated-RNA export factor [RNA processing and modification]
Probab=29.66 E-value=1e+03 Score=28.31 Aligned_cols=18 Identities=11% Similarity=0.158 Sum_probs=11.1
Q ss_pred cCCchhhhhhhccceEEee
Q 006056 532 EFGPEKEFYSFYGHCFESK 550 (663)
Q Consensus 532 d~G~~~~~~~L~~~C~~~~ 550 (663)
|+| +-+|+.|...|.+..
T Consensus 422 dv~-dlllA~l~KkCP~~V 439 (591)
T KOG2412|consen 422 DVG-DLLLARLHKKCPYVV 439 (591)
T ss_pred hHH-HHHHHHHHhcCCccc
Confidence 444 356677777777653
No 71
>KOG1219 consensus Uncharacterized conserved protein, contains laminin, cadherin and EGF domains [Signal transduction mechanisms]
Probab=29.16 E-value=49 Score=44.75 Aligned_cols=59 Identities=25% Similarity=0.610 Sum_probs=37.0
Q ss_pred CceecCCCCCcccCCCCCCCC-CCCCCCCCCCCC----CCCCCCccccCCCCCCCccccCCCcccCCCCCCCC
Q 006056 56 NTIKCKDGSKKFAKTQLNDDY-CDCPDGTDEPGT----SACPNGKFYCQNAGHSPLMIFSSKVNDGICDCCDG 123 (663)
Q Consensus 56 ~~F~C~~gs~~Ip~s~vcDg~-cDC~DGSDE~gt----~aC~~~~f~C~n~g~~~~~Ip~s~VcDg~cDCcDG 123 (663)
..-.|.+|..|++.-. -|| |-||.----..| .+|.. -.|.++| .|||. -++-+|.|+.|
T Consensus 3868 ~~npCqhgG~C~~~~~--ggy~CkCpsqysG~~CEi~~epC~s--nPC~~Gg---tCip~--~n~f~CnC~~g 3931 (4289)
T KOG1219|consen 3868 NDNPCQHGGTCISQPK--GGYKCKCPSQYSGNHCEIDLEPCAS--NPCLTGG---TCIPF--YNGFLCNCPNG 3931 (4289)
T ss_pred ccCcccCCCEecCCCC--CceEEeCcccccCcccccccccccC--CCCCCCC---EEEec--CCCeeEeCCCC
Confidence 3456888777887643 344 888854333333 25642 3788886 89985 46677777754
No 72
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=29.11 E-value=5.9e+02 Score=25.37 Aligned_cols=44 Identities=11% Similarity=0.090 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006056 144 ARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEE 187 (663)
Q Consensus 144 ~r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~ 187 (663)
.+..+++|.+.+...+..=.+.-.++..++.+.+..|...+.+-
T Consensus 56 I~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA 99 (181)
T PRK13454 56 IGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEA 99 (181)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666666666666666666666665555544
No 73
>smart00338 BRLZ basic region leucin zipper.
Probab=29.00 E-value=3.2e+02 Score=22.36 Aligned_cols=22 Identities=23% Similarity=0.370 Sum_probs=8.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHH
Q 006056 179 ELSNLKNEEKILKGLVQQLKER 200 (663)
Q Consensus 179 ~l~~L~~e~~~le~~~~~l~~~ 200 (663)
.+..|+.++..|+.....|..+
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~~ 48 (65)
T smart00338 27 EIEELERKVEQLEAENERLKKE 48 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444443333333
No 74
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=28.54 E-value=2.6e+02 Score=23.82 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=15.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 175 KDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 175 e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
.+..++..+++++..++.+-.+|+.+...+..
T Consensus 28 ~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 28 QLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33444555555555555555555555444333
No 75
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.11 E-value=6e+02 Score=31.09 Aligned_cols=48 Identities=19% Similarity=0.255 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 159 VLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 159 ~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
...|.+++....+.+.+++.++..|+.++...-.++.+++.+++.+..
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~ 593 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRE 593 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566677777777777777777777766655566666665555433
No 76
>PRK10040 hypothetical protein; Provisional
Probab=28.11 E-value=1.1e+02 Score=24.90 Aligned_cols=11 Identities=36% Similarity=0.833 Sum_probs=8.9
Q ss_pred CCCceecCCCC
Q 006056 54 SSNTIKCKDGS 64 (663)
Q Consensus 54 ~~~~F~C~~gs 64 (663)
..+.|.|.|||
T Consensus 32 ~g~~FvCnDGS 42 (52)
T PRK10040 32 TGGKFVCNDGS 42 (52)
T ss_pred cCCEEEeCCCc
Confidence 46789999986
No 77
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=27.84 E-value=6.1e+02 Score=25.14 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 006056 146 DKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEE 187 (663)
Q Consensus 146 ~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~ 187 (663)
..+++|.+.+...+..=.+...+|...+.+.+.++...+.+.
T Consensus 51 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea 92 (184)
T CHL00019 51 DLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEA 92 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555556666666655555555443
No 78
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=27.80 E-value=7.3e+02 Score=27.00 Aligned_cols=90 Identities=20% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 142 KVARDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKE 221 (663)
Q Consensus 142 ~~~r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~~e~~er~~~~k~~k~ 221 (663)
..+...+.....+++.|+..+.++. .++......+.++..++.++..++..+..++............+..........
T Consensus 175 ~~~~~~~~~~~~L~~~g~is~~~~~-~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 253 (423)
T TIGR01843 175 EVISEELEARRKLKEKGLVSRLELL-ELERERAEAQGELGRLEAELEVLKRQIDELQLERQQIEQTFREEVLEELTEAQA 253 (423)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHh
Q 006056 222 RKEAEENERKE 232 (663)
Q Consensus 222 ~~e~~~~~~~~ 232 (663)
.....+.....
T Consensus 254 ~l~~~~~~l~~ 264 (423)
T TIGR01843 254 RLAELRERLNK 264 (423)
T ss_pred HHHHHHHHHHH
No 79
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=27.77 E-value=1e+03 Score=27.81 Aligned_cols=37 Identities=14% Similarity=0.039 Sum_probs=18.5
Q ss_pred chHHHHHHHHHHHHHhhccCCCCcChhhHHHHHHHHH
Q 006056 473 SWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYD 509 (663)
Q Consensus 473 ~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~ar~~~~ 509 (663)
++.-++-..+..-|...|-+.|.--..-+..++++++
T Consensus 254 p~rreia~~~l~~li~dgrihp~riee~~~~~~~~~~ 290 (514)
T TIGR03319 254 PVRREIARMALEKLIQDGRIHPARIEEMVEKATKEVD 290 (514)
T ss_pred hHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 3444544445555666776655322233455555443
No 80
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.51 E-value=1.3e+03 Score=29.93 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccCCchhhhhhhc
Q 006056 508 YDESSDKLSKIQSRISSLTQKLKHEFGPEKEFYSFY 543 (663)
Q Consensus 508 ~~~~e~~l~~l~~~i~~~~~~L~~d~G~~~~~~~L~ 543 (663)
|..--..|.++.+.|..+-.+|+.+++.+.-|..+.
T Consensus 994 i~~f~~~l~~~~r~I~~~s~~l~~~v~~~~~~~~i~ 1029 (1201)
T PF12128_consen 994 ISNFYGVLEDFDRRIKSQSRRLSREVSEDLFFEAIS 1029 (1201)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhhhccccccc
Confidence 333445566677777777777776666655555554
No 81
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=27.19 E-value=6.2e+02 Score=25.06 Aligned_cols=44 Identities=9% Similarity=0.049 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 006056 147 KLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKIL 190 (663)
Q Consensus 147 ~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~l 190 (663)
.+++|...+..++..-.+.-+++..++.+.+.++.+.+.+...+
T Consensus 38 iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~I 81 (155)
T PRK06569 38 IFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDRL 81 (155)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555555544444444333
No 82
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=26.91 E-value=7.6e+02 Score=25.97 Aligned_cols=43 Identities=12% Similarity=0.109 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006056 146 DKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (663)
Q Consensus 146 ~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~ 188 (663)
..+++|.+.+...+..=.+...+|...+.+.+.++..++.+..
T Consensus 32 ~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 74 (250)
T PRK14474 32 QVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRA 74 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666655555555666666666666666655543
No 83
>KOG4504 consensus Cation-independent mannose-6-phosphate receptor CI-MPR [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.63 E-value=82 Score=34.39 Aligned_cols=68 Identities=24% Similarity=0.474 Sum_probs=51.5
Q ss_pred Cceeeccccc---cCCCeeEEEecCCccCCCC-CCceeEEEEEeCCCCce----eeecCCCccEEEEEEecccCCCc
Q 006056 571 STTRLGSWDK---FEDSYHIMLFSNGDKCWNG-PDRSMKVRLRCGLKNEV----TDVDEPSRCEYVALLYTPAVCSE 639 (663)
Q Consensus 571 ~~~~LG~~~~---~~~~y~~m~y~~G~~CwNG-p~Rst~V~l~Cg~~~~i----~sV~Ep~kC~Y~~~~~TPa~C~~ 639 (663)
..++||++-+ |.+..++.+|..|+.|-.| |+.+++++|-|+..+-. ... -.+.|.|.+.-.|-.+|.-
T Consensus 18 ~pv~L~~~~~~~q~a~g~~v~~~~~~~l~~d~~pk~~~~~~~fCA~s~pnTg~yfdl-~~~~~~nt~~~g~~t~~g~ 93 (370)
T KOG4504|consen 18 KPVNLGRVRDGPQWADGIIVLKYVDGDLCPDGIPKKSTTIRFFCAESQPNTGPYFDL-AVEDCENTFAWGTATACGM 93 (370)
T ss_pred cceEeeccCCCcccccceEEEEecccccCCCCCCCcccccceeeeccCCCCcceEEe-eecccCCccccCceeccCc
Confidence 3567888743 6677889999999999554 78999999999885421 111 4567999999999888863
No 84
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=26.07 E-value=1.2e+03 Score=30.23 Aligned_cols=8 Identities=13% Similarity=0.401 Sum_probs=3.6
Q ss_pred hhhHHHHH
Q 006056 6 VDFRFTYA 13 (663)
Q Consensus 6 ~~~~~~~~ 13 (663)
-.|.|+|-
T Consensus 126 DsmLFVFG 133 (1293)
T KOG0996|consen 126 DSMLFVFG 133 (1293)
T ss_pred HHHHHHhh
Confidence 34555443
No 85
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=25.79 E-value=1.7e+02 Score=27.39 Aligned_cols=45 Identities=13% Similarity=0.367 Sum_probs=30.2
Q ss_pred hHHHHHHHHHHHHHhhccCCCCcChhhHHHHHHHHHHHHHHHHHHHHHH
Q 006056 474 WLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEYDESSDKLSKIQSRI 522 (663)
Q Consensus 474 ~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~ar~~~~~~e~~l~~l~~~i 522 (663)
+.+.++..++.++...+++. .+.+..++..++.++++|.+|+.++
T Consensus 62 ~e~K~~r~i~~ml~~~~~~r----~~~~~~l~~rvd~Lerqv~~Lenk~ 106 (108)
T COG3937 62 LEEKIPRKIEEMLSDLEVAR----QSEMDELTERVDALERQVADLENKL 106 (108)
T ss_pred HHHhhhHHHHHHHhhccccc----cchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456666777776666543 2556677788888888887777765
No 86
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=25.72 E-value=9e+02 Score=26.38 Aligned_cols=38 Identities=26% Similarity=0.275 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 169 AKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 169 a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
.......++.+...+.+++..++...+++.++...++.
T Consensus 48 ~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~ 85 (314)
T PF04111_consen 48 LEEELEKLEQEEEELLQELEELEKEREELDQELEELEE 85 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444455555555555555555555555444433
No 87
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=25.55 E-value=1.2e+03 Score=30.62 Aligned_cols=7 Identities=29% Similarity=0.501 Sum_probs=3.6
Q ss_pred ecccccc
Q 006056 575 LGSWDKF 581 (663)
Q Consensus 575 LG~~~~~ 581 (663)
.|--+.|
T Consensus 629 ~GLLDA~ 635 (1353)
T TIGR02680 629 AGLLDAW 635 (1353)
T ss_pred CCCccee
Confidence 4555555
No 88
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.00 E-value=2.4e+02 Score=23.42 Aligned_cols=27 Identities=30% Similarity=0.463 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 006056 171 QNLVKDEAELSNLKNEEKILKGLVQQL 197 (663)
Q Consensus 171 ~~~~e~~~~l~~L~~e~~~le~~~~~l 197 (663)
....+++.+++.++.+...|+.+++.|
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 335556666666666666666666666
No 89
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=24.98 E-value=1.1e+03 Score=27.04 Aligned_cols=38 Identities=5% Similarity=0.059 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 006056 148 LKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKN 185 (663)
Q Consensus 148 ~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~ 185 (663)
+++|.+.+...+..=.+...++...+.+.++.+...+.
T Consensus 30 l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ 67 (445)
T PRK13428 30 MAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKA 67 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333444444444444444433
No 90
>PF03993 DUF349: Domain of Unknown Function (DUF349); InterPro: IPR007139 This motif is found singly or as up to five tandem repeats in a small set of bacterial proteins. There are two or three alpha-helices, and possibly a beta-strand.
Probab=24.89 E-value=3.2e+02 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=17.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 137 CWEAGKVARDKLKKKIATYQEGVLLRKKEIEQAKQN 172 (663)
Q Consensus 137 C~e~g~~~r~~~~~~~~~~~~G~~~R~~li~~a~~~ 172 (663)
|...-...+...+.+.+.....+..|..||++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~n~~~K~~Li~~~~~l 46 (77)
T PF03993_consen 11 CDAFFDRRKEFFEEQDAEREENLEKKEALIEEAEAL 46 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333334444444455555555555555555444
No 91
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=24.73 E-value=5.4e+02 Score=28.15 Aligned_cols=6 Identities=17% Similarity=0.462 Sum_probs=2.1
Q ss_pred HHHHHH
Q 006056 193 LVQQLK 198 (663)
Q Consensus 193 ~~~~l~ 198 (663)
.+.+++
T Consensus 226 ~l~e~~ 231 (312)
T smart00787 226 KLEELE 231 (312)
T ss_pred HHHHHH
Confidence 333333
No 92
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=23.99 E-value=1.3e+03 Score=29.53 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=8.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 006056 177 EAELSNLKNEEKILKGLVQQLKE 199 (663)
Q Consensus 177 ~~~l~~L~~e~~~le~~~~~l~~ 199 (663)
+.++..|+.++..++..+..|+.
T Consensus 400 e~k~~~L~~evek~e~~~~~L~~ 422 (1074)
T KOG0250|consen 400 ENKLEQLKKEVEKLEEQINSLRE 422 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 93
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.95 E-value=6.9e+02 Score=24.48 Aligned_cols=44 Identities=16% Similarity=0.148 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006056 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (663)
Q Consensus 145 r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~ 188 (663)
...+.+|.+.+..++..=.+...+|...+.+.+.++...+.+..
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~ 87 (175)
T PRK14472 44 LSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEAD 87 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466666666666666666666666666666666665555443
No 94
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=23.76 E-value=4.1e+02 Score=21.73 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=8.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHH
Q 006056 179 ELSNLKNEEKILKGLVQQLKE 199 (663)
Q Consensus 179 ~l~~L~~e~~~le~~~~~l~~ 199 (663)
.+..|+..+..|+.....|..
T Consensus 27 ~~~~Le~~~~~L~~en~~L~~ 47 (64)
T PF00170_consen 27 YIEELEEKVEELESENEELKK 47 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444333333333
No 95
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=23.61 E-value=7.1e+02 Score=24.47 Aligned_cols=44 Identities=11% Similarity=0.136 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006056 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (663)
Q Consensus 145 r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~ 188 (663)
...+.+|.+.+...+..=.+..+++..++.+.+.++...+.+..
T Consensus 44 ~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 87 (173)
T PRK13453 44 KDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQ 87 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666555566666666666666666555543
No 96
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=23.60 E-value=8.4e+02 Score=25.34 Aligned_cols=43 Identities=12% Similarity=0.119 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 006056 146 DKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEK 188 (663)
Q Consensus 146 ~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~ 188 (663)
..+.+|.+.+..++..=.+...+|...+.+.+.++...+.+..
T Consensus 32 ~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~ 74 (246)
T TIGR03321 32 DAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQRE 74 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666666555555666666666666665555443
No 97
>COG4499 Predicted membrane protein [Function unknown]
Probab=23.47 E-value=1.6e+02 Score=33.26 Aligned_cols=24 Identities=8% Similarity=0.129 Sum_probs=11.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 006056 177 EAELSNLKNEEKILKGLVQQLKER 200 (663)
Q Consensus 177 ~~~l~~L~~e~~~le~~~~~l~~~ 200 (663)
+..+.++..++.++..++.+++.+
T Consensus 368 ~e~lk~~n~~lqd~~k~~~e~k~e 391 (434)
T COG4499 368 QELLKEYNKKLQDYTKKLGEVKDE 391 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444555555444444444443
No 98
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=23.41 E-value=3.8e+02 Score=24.17 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 006056 187 EKILKGLVQQLKERKE 202 (663)
Q Consensus 187 ~~~le~~~~~l~~~ke 202 (663)
+..|..+.++|+.++.
T Consensus 32 ~~kL~~en~qlk~Ek~ 47 (87)
T PF10883_consen 32 NAKLQKENEQLKTEKA 47 (87)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 99
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=23.26 E-value=4.2e+02 Score=24.40 Aligned_cols=27 Identities=26% Similarity=0.166 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006056 166 IEQAKQNLVKDEAELSNLKNEEKILKG 192 (663)
Q Consensus 166 i~~a~~~~~e~~~~l~~L~~e~~~le~ 192 (663)
.++-++++.++.+++...+++|..++.
T Consensus 71 kEqL~~Lk~kl~~e~~~~~k~i~~le~ 97 (100)
T PF04568_consen 71 KEQLKKLKEKLKEEIEHHRKEIDELEK 97 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455444444444444444443
No 100
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=23.22 E-value=1.2e+03 Score=27.17 Aligned_cols=10 Identities=30% Similarity=0.468 Sum_probs=5.6
Q ss_pred Cceeeccccc
Q 006056 571 STTRLGSWDK 580 (663)
Q Consensus 571 ~~~~LG~~~~ 580 (663)
+.+.||+|+.
T Consensus 462 g~~~L~rF~~ 471 (489)
T PF05262_consen 462 GKWYLGRFDS 471 (489)
T ss_pred CeEEEeecCc
Confidence 3455666654
No 101
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=23.17 E-value=2.5e+02 Score=30.60 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 006056 158 GVLLRKKEIEQAKQNLVKDEAE 179 (663)
Q Consensus 158 G~~~R~~li~~a~~~~~e~~~~ 179 (663)
-++.+.+..+++.+.|.+..++
T Consensus 249 ~~~l~~e~~~K~~k~R~~~~~~ 270 (321)
T PF07946_consen 249 RFKLSPEAKKKAKKNREEEEEK 270 (321)
T ss_pred eeeeCHHHHHHHHHHHHHHHHH
Confidence 3444555555566655554444
No 102
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=23.17 E-value=68 Score=29.42 Aligned_cols=31 Identities=23% Similarity=0.245 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHH
Q 006056 168 QAKQNLVKDEAELSNLKNEE-KILKGLVQQLK 198 (663)
Q Consensus 168 ~a~~~~~e~~~~l~~L~~e~-~~le~~~~~l~ 198 (663)
.+...+..+..++.+|-..+ .+.-..|...+
T Consensus 12 ~ae~~~~~ie~ElEeLTasLFeEAN~MVa~ar 43 (100)
T PF06428_consen 12 EAEQEKEQIESELEELTASLFEEANKMVADAR 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555554 34444443333
No 103
>PF00878 CIMR: Cation-independent mannose-6-phosphate receptor repeat; InterPro: IPR000479 The cation-independent mannose-6-phosphate receptor is a type I membrane protein responsible for transport of phosphorylated lysosomal enzymes from the golgi complex and the cell surface to lysosomes. Lysosomal enzymes bearing phosphomannosyl residues bind specifically to mannose-6-phosphate receptors in the golgi apparatus and the resulting receptor-ligand complex is transported to an acidic prelysosomal compartment where the low pH mediates the dissociation of the complex. This receptor also binds insulin growth factor. It contains 15 copies of a repeat.; GO: 0005215 transporter activity, 0006810 transport, 0005737 cytoplasm, 0016021 integral to membrane; PDB: 1SYO_A 1SZ0_A 1Q25_A 2KVB_A 2KVA_A 2L2G_A 2V5O_A 1GP0_A 1GP3_A 1E6F_B ....
Probab=22.78 E-value=66 Score=30.34 Aligned_cols=28 Identities=36% Similarity=0.765 Sum_probs=21.1
Q ss_pred CCCceeeccccc---cCCCeeEEEecCCccC
Q 006056 569 GHSTTRLGSWDK---FEDSYHIMLFSNGDKC 596 (663)
Q Consensus 569 g~~~~~LG~~~~---~~~~y~~m~y~~G~~C 596 (663)
++...+||.... |.+..+.|.|.+|+.|
T Consensus 114 ~~~~~~lG~~~~~~~~~~g~l~L~Y~~G~~C 144 (145)
T PF00878_consen 114 GNKSFSLGQVNSSPTYEDGVLQLTYTNGDKC 144 (145)
T ss_dssp TSCEEEEEEECSEEEEETTEEEEEEES-SBE
T ss_pred CCCceeeEEeccceEEECCEEEEEECCCCcC
Confidence 335678999864 4567799999999999
No 104
>PRK00106 hypothetical protein; Provisional
Probab=22.66 E-value=1.3e+03 Score=27.25 Aligned_cols=36 Identities=11% Similarity=-0.021 Sum_probs=18.1
Q ss_pred chHHHHHHHHHHHHHhhccCCCCcChhhHHHHHHHH
Q 006056 473 SWLEKIQQTVRNILQAVNLFQTPVDKSDAARVRKEY 508 (663)
Q Consensus 473 ~~~~~~~~~~~~~l~~~~~~~~~~d~~~~~~ar~~~ 508 (663)
++.-++-..+..-|...|-+.|.--..-+.++++++
T Consensus 275 pvRReiAr~~le~Li~dgrIhp~rIEe~v~k~~~e~ 310 (535)
T PRK00106 275 PIRREIARMTLESLIKDGRIHPARIEELVEKNRLEM 310 (535)
T ss_pred hHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 455555545555566677655532223345555443
No 105
>PRK04863 mukB cell division protein MukB; Provisional
Probab=22.41 E-value=1.6e+03 Score=30.06 Aligned_cols=58 Identities=16% Similarity=0.262 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 148 LKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 148 ~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
.+++..+++.+...| .-..++.++..+.+..+..+...+.+++..+..|+.+++.+.+
T Consensus 278 ~eERR~liEEAag~r-~rk~eA~kkLe~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 278 ANERRVHLEEALELR-RELYTSRRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666555 3344556666666666666666666666666666666555444
No 106
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=21.96 E-value=4.2e+02 Score=28.31 Aligned_cols=34 Identities=12% Similarity=0.134 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006056 169 AKQNLVKDEAELSNLKNEEKILKGLVQQLKERKE 202 (663)
Q Consensus 169 a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke 202 (663)
+++-|...+.+..+....+..|+.+-+.|+.+.+
T Consensus 206 ~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~ 239 (269)
T KOG3119|consen 206 VRKSRDKRKQKEDEMAHRVAELEKENEALRTQVE 239 (269)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344443333333444444444444444444433
No 107
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=21.91 E-value=5.2e+02 Score=22.26 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=8.8
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 006056 181 SNLKNEEKILKGLVQQLKER 200 (663)
Q Consensus 181 ~~L~~e~~~le~~~~~l~~~ 200 (663)
..|+..+..++..+..+..+
T Consensus 36 KKLr~~~~e~e~~~~~l~~~ 55 (74)
T PF12329_consen 36 KKLRAKIKELEKQIKELKKK 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 108
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=21.46 E-value=8.4e+02 Score=24.61 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 153 ATYQEGVLLRKKE---IEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQR 215 (663)
Q Consensus 153 ~~~~~G~~~R~~l---i~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~~e~~er~~~ 215 (663)
.+++.++..+..+ +..-+.........+..|+..+..++.++.+++.++..+.......+.+.
T Consensus 84 dLAr~al~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 84 DLAREALQRKADLEEQAERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=21.37 E-value=4.5e+02 Score=27.82 Aligned_cols=34 Identities=21% Similarity=0.311 Sum_probs=22.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 173 LVKDEAELSNLKNEEKILKGLVQQLKERKEQIEK 206 (663)
Q Consensus 173 ~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~ 206 (663)
..+++.+|..|+.++..|...++++.-+.+++.+
T Consensus 56 ~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 56 LTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456667777777777777777777766655444
No 110
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=21.27 E-value=1.4e+03 Score=27.84 Aligned_cols=32 Identities=19% Similarity=0.326 Sum_probs=29.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 006056 499 SDAARVRKEYDESSDKLSKIQSRISSLTQKLK 530 (663)
Q Consensus 499 ~~~~~ar~~~~~~e~~l~~l~~~i~~~~~~L~ 530 (663)
+.+..||++++-++..|..-+.+|.+++.++.
T Consensus 622 saLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 622 SALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77889999999999999999999999998875
No 111
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=21.11 E-value=1.4e+03 Score=26.85 Aligned_cols=6 Identities=33% Similarity=0.263 Sum_probs=2.9
Q ss_pred ccccCC
Q 006056 106 LMIFSS 111 (663)
Q Consensus 106 ~~Ip~s 111 (663)
..||..
T Consensus 156 I~IPL~ 161 (489)
T PF05262_consen 156 IVIPLS 161 (489)
T ss_pred EEEecc
Confidence 455544
No 112
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=20.45 E-value=9.3e+02 Score=30.00 Aligned_cols=17 Identities=24% Similarity=0.468 Sum_probs=12.4
Q ss_pred eecCeEEEEeecCCcee
Q 006056 549 SKQNKYVYKVCPYKKAT 565 (663)
Q Consensus 549 ~~~g~YtYelC~~~~v~ 565 (663)
...+-|-|+-||+..|.
T Consensus 601 KiDRLYgwk~~p~~~i~ 617 (1064)
T KOG1144|consen 601 KIDRLYGWKSCPNAPIV 617 (1064)
T ss_pred hhhhhcccccCCCchHH
Confidence 34567889999987664
No 113
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=20.34 E-value=4.2e+02 Score=24.34 Aligned_cols=31 Identities=13% Similarity=0.129 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006056 172 NLVKDEAELSNLKNEEKILKGLVQQLKERKE 202 (663)
Q Consensus 172 ~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke 202 (663)
...+++.++..++.++..++.+.+.|+.+.+
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~ 58 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEID 58 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555555544433
No 114
>PHA02562 46 endonuclease subunit; Provisional
Probab=20.16 E-value=9.4e+02 Score=27.58 Aligned_cols=76 Identities=17% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006056 145 RDKLKKKIATYQEGVLLRKKEIEQAKQNLVKDEAELSNLKNEEKILKGLVQQLKERKEQIEKAEEKERLQREKEEKERKE 224 (663)
Q Consensus 145 r~~~~~~~~~~~~G~~~R~~li~~a~~~~~e~~~~l~~L~~e~~~le~~~~~l~~~ke~~e~~e~~er~~~~k~~k~~~e 224 (663)
......+...++.-+..++.-+......+..++.++..|+.....++..+.++..+...+.. ++....+....+..
T Consensus 332 ~~~~~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~~~~~----~~~~~~ke~~~~~~ 407 (562)
T PHA02562 332 FNEQSKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAEFVDNAEELAKLQDELDKIVK----TKSELVKEKYHRGI 407 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
No 115
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=20.05 E-value=8.6e+02 Score=26.60 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=9.0
Q ss_pred HhHHHHHHHHHHHHHHHHHH
Q 006056 181 SNLKNEEKILKGLVQQLKER 200 (663)
Q Consensus 181 ~~L~~e~~~le~~~~~l~~~ 200 (663)
+.|..++..|+..=++|+.+
T Consensus 251 E~l~ge~~~Le~rN~~LK~q 270 (294)
T KOG4571|consen 251 EALLGELEGLEKRNEELKDQ 270 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444
Done!