BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006057
(663 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
Of Plant Myb-Related Dna Binding Motifs Of The
Arabidopsis Response Regulators
Length = 64
Score = 105 bits (262), Expect = 9e-23, Method: Composition-based stats.
Identities = 47/64 (73%), Positives = 59/64 (92%)
Query: 195 TTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYL 254
T QKKPRV+W+ ELH KF+AAV+ LG+++AVPKKILDLMNV+KLTRENVASHLQK+R+ L
Sbjct: 1 TAQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60
Query: 255 KRIS 258
K++S
Sbjct: 61 KKVS 64
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 63.2 bits (152), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/122 (29%), Positives = 62/122 (50%), Gaps = 1/122 (0%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L +DD+ V T S + L++ EN N D+VI+D+ MP + G
Sbjct: 5 KILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSG 64
Query: 76 FKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
+L E+ + + VI+L+G+GD + + GA +YL KPV ++L + + RK
Sbjct: 65 MDILREIKKITPHMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124
Query: 135 KI 136
K+
Sbjct: 125 KL 126
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 64/121 (52%), Gaps = 3/121 (2%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V +DDD + V++ + A AL L + + +VISD+ MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL--SADFAGIVISDIRMPGMDGL 63
Query: 77 KLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
L +++ L+ DLP+I+++G+GD + ++ I GA D++ KP + L + ++++
Sbjct: 64 ALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEKKRR 123
Query: 136 I 136
+
Sbjct: 124 L 124
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 34/108 (31%), Positives = 58/108 (53%), Gaps = 3/108 (2%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V +DDD + V++ + A AL L + + +VISD+ MP MDG
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL--SADFAGIVISDIRMPGMDGL 63
Query: 77 KLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
L +++ L+ DLP+I+++G+GD + ++ I GA D++ KP + L
Sbjct: 64 ALFRKILALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRL 111
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 55/109 (50%), Gaps = 11/109 (10%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
+L V+D P Y HV +A+ L L R DL+ISDV MP+M
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLTRP-----DLIISDVLMPEM 64
Query: 74 DGFKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
DG+ L + + DL PVI+L+ DP+ V++ + GA D++ KP +
Sbjct: 65 DGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCK 113
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 6/125 (4%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ +L VDD P Y T + + AL +L +KN D+V+SDV+MP+MD
Sbjct: 130 MMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMD 187
Query: 75 GFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK---NIWQHV 130
G++L + + L + LPVI ++ N + + + G L KPV ++ +K ++
Sbjct: 188 GYRLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 247
Query: 131 VRRKK 135
VR+ +
Sbjct: 248 VRKSR 252
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 55.5 bits (132), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 37/123 (30%), Positives = 63/123 (51%), Gaps = 6/123 (4%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD P Y T + + AL +L +KN D+V+SDV+MP+MDG+
Sbjct: 11 ILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL--SKNHIDIVLSDVNMPNMDGY 68
Query: 77 KLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK---NIWQHVVR 132
+L + + L + LPVI ++ N + + + G L KPV ++ +K ++ VR
Sbjct: 69 RLTQRIRQLGLTLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 128
Query: 133 RKK 135
+ +
Sbjct: 129 KSR 131
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 56/110 (50%), Gaps = 8/110 (7%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD 72
R+L VDDD + +QA+TA++ LR DLV+ D+ +P
Sbjct: 7 RILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVRELRP-----DLVLLDLMLPG 61
Query: 73 MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE 122
M+G + ++ + +P++ML+ D V+ G+ GA DY++KP + +E
Sbjct: 62 MNGIDVCRVLRADSGVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKE 111
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L +DDD + V + L++ + DLVI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 77 KLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
+L+ + + P+I+LSG G ++ + GA DYL+KP +E+L + +H VRR
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVXSDAVEALRLGAADYLIKP--LEDLA-VLEHSVRR-- 120
Query: 136 IDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLNKKRKDQ 176
A D+ +++ + +A N + LN ++DQ
Sbjct: 121 --ALDRAYLRVENQRYRDKLEA---ANRELQASLNLLQEDQ 156
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 50/74 (67%), Gaps = 5/74 (6%)
Query: 63 LVISDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP---- 117
++++D+ MPDM G +LL +G L++++P I+++G+GD + ++ + GA D++ KP
Sbjct: 50 VLVTDLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDT 109
Query: 118 VRIEELKNIWQHVV 131
V IE ++ +H+V
Sbjct: 110 VIIEAIERASEHLV 123
>pdb|1MVO|A Chain A, Crystal Structure Of The Phop Receiver Domain From
Bacillus Subtilis
Length = 136
Score = 51.6 bits (122), Expect = 1e-06, Method: Composition-based stats.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 3/133 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD+ Y V T S ALK + K DL++ DV +P +DG
Sbjct: 5 KILVVDDEESIVTLLQYNLERSGYDVITASDGEEALK--KAETEKPDLIVLDVMLPKLDG 62
Query: 76 FKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
++ +L ++ P++ML+ + + G+ GA DY+ KP E+ + ++RR
Sbjct: 63 IEVCKQLRQQKLMFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRS 122
Query: 135 KIDAKDQNNSDNQ 147
+I A +++
Sbjct: 123 EIRAPSSEMKNDE 135
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 39/124 (31%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDDD Y V + AL+ + KN D +I DV +P +DG+
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQIY--KNLPDALICDVLLPGIDGY 64
Query: 77 KLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
L + V L LP++ L+ GD + G GA DYL KP +EL ++++ R
Sbjct: 65 TLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124
Query: 134 KKID 137
I+
Sbjct: 125 TTIE 128
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 74/161 (45%), Gaps = 13/161 (8%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L +DDD + V + L++ + DLVI D+ P +DG
Sbjct: 8 LLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESEQP--DLVICDLRXPQIDGL 65
Query: 77 KLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
+L+ + + P+I+LSG G ++ + GA DYL+KP +E+L + +H VRR
Sbjct: 66 ELIRRIRQTASETPIIVLSGAGVMSDAVEALRLGAADYLIKP--LEDLA-VLEHSVRR-- 120
Query: 136 IDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNGKLNKKRKDQ 176
A D+ +++ + +A N + LN ++DQ
Sbjct: 121 --ALDRAYLRVENQRYRDKLEA---ANRELQASLNLLQEDQ 156
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 3/119 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
RVL VDD+ + V T + AL RE + D VI DV P DG
Sbjct: 25 RVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARETRP--DAVILDVXXPGXDG 82
Query: 76 FKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
F +L + + +D P + L+ + + G+T G DY+ KP +EE+ + ++RR
Sbjct: 83 FGVLRRLRADGIDAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141
>pdb|1ZIT|A Chain A, Structure Of The Receiver Domain Of Ntrc4 From Aquifex
Aeolicus
pdb|2JRL|A Chain A, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
pdb|2JRL|B Chain B, Solution Structure Of The Beryllofluoride-Activated Ntrc4
Receiver Domain Dimer
Length = 121
Score = 51.2 bits (121), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNK-----FDLVISDVHM 70
RVL VDD+ YH T K LRE + K F +++ DV M
Sbjct: 3 RVLVVDDEESITSSLSAILEEEGYHPDTA-------KTLREAEKKIKELFFPVIVLDVWM 55
Query: 71 PDMDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
PD DG ++ + D VI+++G+G +K I GA ++L KP +E
Sbjct: 56 PDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERF 109
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
Query: 61 FDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
FD+VI D+ +P DG+++L+ + ++ PV+ML+ D + +KG+ GA DYL KP
Sbjct: 47 FDVVILDIMLPVHDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFD 106
Query: 120 IEELKNIWQHVVRRK 134
+ EL + ++RRK
Sbjct: 107 LRELIARVRALIRRK 121
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 49/74 (66%), Gaps = 5/74 (6%)
Query: 63 LVISDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP---- 117
++++ + MPDM G +LL +G L++++P I+++G+GD + ++ + GA D++ KP
Sbjct: 50 VLVTXLRMPDMSGVELLRNLGDLKINIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDT 109
Query: 118 VRIEELKNIWQHVV 131
V IE ++ +H+V
Sbjct: 110 VIIEAIERASEHLV 123
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 52/97 (53%), Gaps = 3/97 (3%)
Query: 39 YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLSGNG 97
+ V T AL+ EN+ D ++ D++MP +DG ++ L ++ D+PV +LS
Sbjct: 32 FEVATAVDGAEALRSATENRP--DAIVLDINMPVLDGVSVVTALRAMDNDVPVCVLSARS 89
Query: 98 DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134
+ G+ GA DYL+KP + EL + ++RR+
Sbjct: 90 SVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126
>pdb|1P6U|A Chain A, Nmr Structure Of The Bef3-Activated Structure Of The
Response Regulator Chey2-Mg2+ From Sinorhizobium
Meliloti
pdb|1P6Q|A Chain A, Nmr Structure Of The Response Regulator Chey2 From
Sinorhizobium Meliloti, Complexed With Mg++
Length = 129
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 36/114 (31%), Positives = 52/114 (45%), Gaps = 6/114 (5%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
++VL VDD + +T +K++ +N + LVISD +MP M
Sbjct: 7 IKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH--LVISDFNMPKM 64
Query: 74 DGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
DG LL+ V I+L+ GD LV K GA + L KP IE++K
Sbjct: 65 DGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMK 118
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/120 (25%), Positives = 60/120 (50%), Gaps = 8/120 (6%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
++ V+D+P Y V+ T+ L+ + +N++ DL++ D+++PD +G
Sbjct: 5 IVIVEDEPVTQARLQSYFTQEGYTVSVTASG-AGLREIXQNQS-VDLILLDINLPDENGL 62
Query: 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136
L + + +I+++G D + G+ GA DY+ KP+ + EL VVR K +
Sbjct: 63 XLTRALRERSTVGIILVTGRSDRIDRIVGLEXGADDYVTKPLELREL------VVRVKNL 116
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI 120
D+++SD+ MP MDG LL+ + LPVI+++ + D + GA DYL KP I
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 121 EE 122
+E
Sbjct: 109 DE 110
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI 120
D+++SD+ MP MDG LL+ + LPVI+++ + D + GA DYL KP I
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 121 EE 122
+E
Sbjct: 109 DE 110
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI 120
D+++SD+ MP MDG LL+ + LPVI+++ + D + GA DYL KP I
Sbjct: 49 DVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 121 EE 122
+E
Sbjct: 109 DE 110
>pdb|3DZD|A Chain A, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
pdb|3DZD|B Chain B, Crystal Structure Of Sigma54 Activator Ntrc4 In The
Inactive State
Length = 368
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 13/120 (10%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNK-----FDLVISDVHM 70
RVL VDD+ YH T K LRE + K F +++ DV
Sbjct: 2 RVLVVDDEESITSSLSAILEEEGYHPDTA-------KTLREAEKKIKELFFPVIVLDVWX 54
Query: 71 PDMDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQH 129
PD DG ++ + D VI+++G+G +K I GA ++L KP +E +H
Sbjct: 55 PDGDGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKH 114
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/128 (23%), Positives = 64/128 (50%), Gaps = 3/128 (2%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ VL ++DD V + + A KLL E F++V+ + +PD++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLXLLLPDVN 58
Query: 75 GFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
G ++L+ + + VI+++G+G K ++ + GA D+L KP +EE++ +
Sbjct: 59 GLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEH 118
Query: 134 KKIDAKDQ 141
+K+ +++
Sbjct: 119 RKLRKENE 126
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/120 (25%), Positives = 56/120 (46%), Gaps = 2/120 (1%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD+ Y V T AL+ + D++I D+ +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILDLMLPEIDG 60
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
++ + + +P++MLS + G+ GA DY+ KP EL+ + ++RR +
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD+ Y V A++++ E + DL++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
++ V + D+P+IML+ + G+ GA DY+ KP EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD+ Y V A++++ E + DL++ D+ +P+ DG
Sbjct: 4 KILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEELQP--DLILLDIMLPNKDG 61
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
++ V + D+P+IML+ + G+ GA DY+ KP EL
Sbjct: 62 VEVCREVRKKYDMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTREL 109
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 46.2 bits (108), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDD Y V+T TAL + ++ D+++ DV MP MDG
Sbjct: 3 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 60
Query: 76 FKLLELVGLEMD-----LPVIM---LSGNGDPKLVMKGITHGACDYLLKPV 118
F + L+ D +PV++ L G GD ++G+ GA D+L KP+
Sbjct: 61 FTVCR--KLKDDPTTRHIPVVLITALDGRGDR---IQGLESGASDFLTKPI 106
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/111 (31%), Positives = 53/111 (47%), Gaps = 15/111 (13%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDD Y V+T TAL + ++ D+++ DV MP MDG
Sbjct: 4 RILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAM--AARDLPDIILLDVMMPGMDG 61
Query: 76 FKLLELVGLEMD-----LPVIM---LSGNGDPKLVMKGITHGACDYLLKPV 118
F + L+ D +PV++ L G GD ++G+ GA D+L KP+
Sbjct: 62 FTVCR--KLKDDPTTRHIPVVLITALDGRGDR---IQGLESGASDFLTKPI 107
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 3/89 (3%)
Query: 61 FDLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
DLVI + + DG + + E LPV+ + D ++K + G D L +P
Sbjct: 196 VDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRP 255
Query: 118 VRIEELKNIWQHVVRRKKIDAKDQNNSDN 146
+ +EL + ++RK+ +NN D+
Sbjct: 256 IDPQELSARVKTQIQRKRYTDYLRNNLDH 284
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 45.8 bits (107), Expect = 7e-05, Method: Composition-based stats.
Identities = 31/101 (30%), Positives = 55/101 (54%), Gaps = 8/101 (7%)
Query: 39 YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP--VIMLSGN 96
+HV T AI ++ ++K L+I D+ +PDM G +L+ + + D+P VI+ + +
Sbjct: 32 FHVETGRDAIQFIE-----RSKPQLIILDLKLPDMSGEDVLDWIN-QNDIPTSVIIATAH 85
Query: 97 GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137
G L + I GA D+L KP+ + LK ++R K++
Sbjct: 86 GSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLE 126
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 45.4 bits (106), Expect = 9e-05, Method: Composition-based stats.
Identities = 28/81 (34%), Positives = 42/81 (51%)
Query: 53 LLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD 112
LL K DL+I D+ +PD DG + + + +PVI+LS + + + GA D
Sbjct: 38 LLEAATRKPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLSARSEESDKIAALDAGADD 97
Query: 113 YLLKPVRIEELKNIWQHVVRR 133
YL KP I EL+ + +RR
Sbjct: 98 YLSKPFGIGELQARLRVALRR 118
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 61 FDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
FD+VI D+ +P DG+++L+ ++ PV+ L+ D + +KG+ GA DYL KP
Sbjct: 47 FDVVILDIXLPVHDGWEILKSXRESGVNTPVLXLTALSDVEYRVKGLNXGADDYLPKPFD 106
Query: 120 IEELKNIWQHVVRRK 134
+ EL + ++RRK
Sbjct: 107 LRELIARVRALIRRK 121
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI 120
D+++S + MP MDG LL+ + LPVI+++ + D + GA DYL KP I
Sbjct: 49 DVLLSXIRMPGMDGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDI 108
Query: 121 EE 122
+E
Sbjct: 109 DE 110
>pdb|1DZ3|A Chain A, Domain-Swapping In The Sporulation Response Regulator
Spo0a
Length = 130
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 51 LKLLRENKNKFDLVISDVHMPDMDGFKLLELV--GLEMDLPVIMLSGNGDPKLVMKGITH 108
L++L E + D+++ D+ MP +DG +LE + G E VIML+ G + K +
Sbjct: 41 LQMLEEKRP--DILLLDIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVEL 98
Query: 109 GACDYLLKPVRIEEL 123
GA ++LKP +E L
Sbjct: 99 GASYFILKPFDMENL 113
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 15/127 (11%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+VL V+D+ Y T + ++AL + RENK DL++ D+ +P++ G
Sbjct: 3 KVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIARENKP--DLILMDIQLPEISG 60
Query: 76 FKLLELVGLEMDL---PVIMLSGNGDPKLVMKG----ITHGACD-YLLKPVRIEELKNIW 127
++ + + + DL PV+ ++ MKG I G C+ Y+ KP+ +
Sbjct: 61 LEVTKWLKEDDDLAHIPVVAVTA-----FAMKGDEERIREGGCEAYISKPISVVHFLETI 115
Query: 128 QHVVRRK 134
+ ++ R+
Sbjct: 116 KRLLERQ 122
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 44.7 bits (104), Expect = 2e-04, Method: Composition-based stats.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 5/90 (5%)
Query: 47 AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD---LPVIMLSGNGDPKLVM 103
+TAL +L+ K FD V++D +MP M G LL+ + + + LPV+M++ + ++
Sbjct: 46 GLTALPMLK--KGDFDFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQII 103
Query: 104 KGITHGACDYLLKPVRIEELKNIWQHVVRR 133
+ G Y++KP LK + R
Sbjct: 104 EAAQAGVNGYIVKPFTAATLKEKLDKIFER 133
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 14 GLRVLAVDDDPXXXXXXXXXXXXXQYHV----TTTSQAITALKLLRENKNKFDLVISDVH 69
G RVL VDD Y V T +A+ K L+ D+V D+
Sbjct: 1 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP-----DIVTMDIT 55
Query: 70 MPDMDGFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
MP+M+G + E++ ++ + +I+ S G +V++ I GA D+++KP +
Sbjct: 56 MPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 106
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 14 GLRVLAVDDDPXXXXXXXXXXXXXQYHV----TTTSQAITALKLLRENKNKFDLVISDVH 69
G RVL VDD Y V T +A+ K L+ D+V D+
Sbjct: 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKELKP-----DIVTMDIT 56
Query: 70 MPDMDGFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
MP+M+G + E++ ++ + +I+ S G +V++ I GA D+++KP +
Sbjct: 57 MPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQ 107
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 2/120 (1%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD+ Y V T AL+ + D++I + +P++DG
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAEQP--DIIILXLMLPEIDG 60
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
++ + + +P++MLS + G+ GA DY+ KP EL+ + ++RR +
Sbjct: 61 LEVAKTIRKTSSVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRRSQ 120
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + + AL ++ K + DLV+ D+ +P MDG
Sbjct: 3 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 60
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++L+ + ++ ++ VI+++ G+ ++ + GA + KP I+E+++
Sbjct: 61 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 111
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
L+ L VDD+ ++ V + AL L+ F VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGF--VISDWRMPNM 62
Query: 74 DGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
DG +LL+ + G LPV+M++ + + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTAHAKKENIIAAAQAGASGYVVKP 109
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
DL++ D +P G + ++ + E D+PV+ML+ G+ + ++G+ GA DY+ KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 119 RIEELKNIWQHVVRR 133
+EL + V+RR
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
DL++ D +P G + ++ + E D+PV+ML+ G+ + ++G+ GA DY+ KP
Sbjct: 48 DLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 119 RIEELKNIWQHVVRR 133
+EL + V+RR
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 43.1 bits (100), Expect = 4e-04, Method: Composition-based stats.
Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
DL+I D+ MP M+G KLLE + D PV+++S + + K + G D LLKPV+
Sbjct: 53 DLMICDIAMPRMNGLKLLEHIRNRGDQTPVLVISATENMADIAKALRLGVEDVLLKPVK 111
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + V+ GA Y++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVKP 109
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
L+ L VDD+ ++ V + AL L+ F VISD +MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGF--VISDWNMPNM 62
Query: 74 DGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
DG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + + AL ++ K + DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++L+ + ++ ++ VI+++ G+ ++ + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 32/131 (24%), Positives = 60/131 (45%), Gaps = 8/131 (6%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V VDDD + V T A T L+ R ++ ++ D+ MP M G
Sbjct: 7 VFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPEQH--GCLVLDMRMPGMSGI 64
Query: 77 KLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL-----KNIWQHV 130
+L E L + +P++ ++ +GD + ++ + GA ++L KP + L + + +
Sbjct: 65 ELQEQLTAISDGIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124
Query: 131 VRRKKIDAKDQ 141
RR+ + +DQ
Sbjct: 125 ERRQARETQDQ 135
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 43.1 bits (100), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
L+ L VDD+ ++ V + AL L+ F VISD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRITRNLLKELGFNNVEEAEDGVDALNKLQAGGYGF--VISDWNMPNM 59
Query: 74 DGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
DG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 60 DGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 49 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 108
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 52 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ D + + GA Y++KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVKP 110
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 52 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 42.7 bits (99), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
L+ L VDD+ ++ V + AL L+ F VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGF--VISDWMMPNM 62
Query: 74 DGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
DG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 109
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 42.4 bits (98), Expect = 7e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + + AL ++ K + DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++L+ + ++ ++ VI+++ G+ ++ + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 42.4 bits (98), Expect = 8e-04, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVKP 110
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 56/111 (50%), Gaps = 3/111 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + + AL ++ K + DLV+ D+ +P MDG
Sbjct: 7 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 64
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++L+ + ++ ++ VI+++ G+ ++ + GA + KP I+E+++
Sbjct: 65 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 115
>pdb|1QMP|A Chain A, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|B Chain B, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|C Chain C, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
pdb|1QMP|D Chain D, Phosphorylated Aspartate In The Crystal Structure Of The
Sporulation Response Regulator, Spo0a
Length = 130
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 51 LKLLRENKNKFDLVISDVHMPDMDGFKLLELV--GLEMDLPVIMLSGNGDPKLVMKGITH 108
L++L E + D+++ + MP +DG +LE + G E VIML+ G + K +
Sbjct: 41 LQMLEEKRP--DILLLXIIMPHLDGLAVLERIRAGFEHQPNVIMLTAFGQEDVTKKAVEL 98
Query: 109 GACDYLLKPVRIEEL 123
GA ++LKP +E L
Sbjct: 99 GASYFILKPFDMENL 113
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L ++DD Y V A L RE+ DL++ D+ +PD DG
Sbjct: 39 RILVIEDDHDIANVLRXDLTDAGYVVDHADSAXNGLIKAREDHP--DLILLDLGLPDFDG 96
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
+++ + LP+I+L+ + ++ + GA DYL+KP +EL
Sbjct: 97 GDVVQRLRKNSALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDEL 144
>pdb|3HV2|A Chain A, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
pdb|3HV2|B Chain B, Crystal Structure Of Signal Receiver Domain Of Hd Domain-
Containing Protein From Pseudomonas Fluorescens Pf-5
Length = 153
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 33/87 (37%), Positives = 44/87 (50%), Gaps = 4/87 (4%)
Query: 39 YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLPVIMLSGNG 97
Y + A AL+LL + DLVIS H+P MDG LL + + I+L+G+
Sbjct: 39 YTLHFARDATQALQLLASRE--VDLVISAAHLPQMDGPTLLARIHQQYPSTTRILLTGDP 96
Query: 98 DPKLVMKGITHGAC-DYLLKPVRIEEL 123
D KL+ K I G YL KP +EL
Sbjct: 97 DLKLIAKAINEGEIYRYLSKPWDDQEL 123
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVKP 110
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 54 YGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIAAAQAGASGYVVKP 113
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
L+ L VDD+ ++ V + AL L+ F VISD +MP+M
Sbjct: 2 LKFLVVDDNSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGF--VISDWNMPNM 59
Query: 74 DGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
DG +LL+ + G LPV+M + + ++ GA Y++KP
Sbjct: 60 DGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 23/75 (30%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
DL++ + +P G + ++ + E D+PV+ML+ G+ + ++G+ GA DY+ KP
Sbjct: 48 DLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPF 107
Query: 119 RIEELKNIWQHVVRR 133
+EL + V+RR
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 54 YGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIAAAQAGASGYVVKP 113
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 54 YGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVKP 113
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 63 LVISDVHMPDMDGFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK-PV 118
+++ D+ MP +DG L+ L D+P+I+LS DP + GA DYL+K P
Sbjct: 64 VILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAFAAGANDYLVKLPD 123
Query: 119 RIEELKNIWQH 129
IE + I H
Sbjct: 124 NIELVARIRYH 134
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 3/119 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
RVL V+D+ + V A A L N++ D+ I D+ +PD DG
Sbjct: 2 RVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYL--NEHIPDIAIVDLGLPDEDG 59
Query: 76 FKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133
L+ ++ LP+++L+ + ++ ++ GA DY+ KP IEE+ Q + RR
Sbjct: 60 LSLIRRWRSNDVSLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVXARXQALXRR 118
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
F +ISD +MP+MDG +LL+ + + LPV+M++ + ++ GA Y++KP
Sbjct: 51 FGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
F +ISD +MP+MDG +LL+ + + LPV+M++ + ++ GA Y++KP
Sbjct: 50 FGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.6 bits (96), Expect = 0.001, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 50 YGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 109
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVKP 110
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVKP 110
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 41.6 bits (96), Expect = 0.002, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + + AL ++ K + DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++L+ + ++ ++ VI+++ G+ + + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMAQESKELGALTHFAKPFDIDEIRD 113
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 31/107 (28%), Positives = 49/107 (45%), Gaps = 6/107 (5%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
L+ L VDD+ ++ V + AL L+ F VISD MP+M
Sbjct: 5 LKFLVVDDESTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAGGYGF--VISDWMMPNM 62
Query: 74 DGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
DG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 63 DGLELLKTIRADGAMSALPVLMVTALAKKENIIAAAQAGASGYVVKP 109
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M+ + ++ GA Y++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/111 (23%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + + AL ++ K + DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++L+ + ++ ++ VI+++ G+ ++ + GA KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTAFAKPFDIDEIRD 113
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 54 YGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIAAAQAGASGYVVKP 113
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 8/95 (8%)
Query: 39 YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG---LEMDLPVIMLSG 95
+H + Q A+ N+ K +++ D+ MP +DG LL D+P+I+LS
Sbjct: 46 FHFCSDPQQAVAVA----NQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLST 101
Query: 96 NGDPKLVMKGITHGACDYLLK-PVRIEELKNIWQH 129
+P + GA DYL+K P IE + I H
Sbjct: 102 KEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 59 NKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
+K DLVI DV MP DG + + P+++L+ LV + GA YL+KP
Sbjct: 57 HKPDLVIMDVKMPRRDGIDAASEIASKRIAPIVVLTAFSQRDLVERARDAGAMAYLVKPF 116
Query: 119 RIEEL 123
I +L
Sbjct: 117 SISDL 121
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M++ + ++ GA +++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 51/110 (46%), Gaps = 8/110 (7%)
Query: 13 SGLRVLAVDDDPXXXXXXXXX--XXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHM 70
S +RVL+VDD V T + A L++ K D++ DV M
Sbjct: 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK--KFNPDVLTLDVEM 59
Query: 71 PDMDGFKLLELVGLEMDLPVIM---LSGNGDPKLVMKGITHGACDYLLKP 117
P MDG LE + +PV+M L+G G ++ ++ + GA D++ KP
Sbjct: 60 PRMDGLDFLEKLMRLRPMPVVMVSSLTGKGS-EVTLRALELGAIDFVTKP 108
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + LPV+M++ + ++ GA Y++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 19/75 (25%), Positives = 41/75 (54%)
Query: 59 NKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
NK+DL+ ++ + D DG+ L + + P++ + + + ++ + G DYL+KP+
Sbjct: 47 NKYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYXTYINEDQSILNALNSGGDDYLIKPL 106
Query: 119 RIEELKNIWQHVVRR 133
+E L + ++RR
Sbjct: 107 NLEILYAKVKAILRR 121
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 9/118 (7%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+VL VDD Y V AL+ L E DL++ D+ MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLDIMMPVMDG 61
Query: 76 FKLLELVGLEMD---LPVIMLSGNGDPKLVMKGITHGACDYLLKPVR----IEELKNI 126
F +L+ + + + +PVI+L+ G + ++ GA + KP IEE+K++
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + + AL ++ K + DLV+ D+ +P MDG
Sbjct: 5 KILIVDDQYGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLDMKIPGMDG 62
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++ + + ++ ++ VI+++ G+ ++ + GA + KP I+E+++
Sbjct: 63 IEIAKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 25/111 (22%), Positives = 55/111 (49%), Gaps = 3/111 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
++L VDD Y + + AL ++ K + DLV+ + +P MDG
Sbjct: 5 KILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIV--TKERPDLVLLXMKIPGMDG 62
Query: 76 FKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125
++L+ + ++ ++ VI+++ G+ ++ + GA + KP I+E+++
Sbjct: 63 IEILKRMKVIDENIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRD 113
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
+++L VDD Y V + A + L N + ++I+D +MP+M
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWNMPEM 64
Query: 74 DGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
+G L++ V + ++P+IM++ G V+ + G +Y++KP + LK
Sbjct: 65 NGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|3CU5|A Chain A, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
pdb|3CU5|B Chain B, Crystal Structure Of A Two Component Transcriptional
Regulator Arac From Clostridium Phytofermentans Isdg
Length = 141
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 32/122 (26%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQA---ITALKLLRENKNKFDLVISDVHMP 71
LR+L VDD+ QA I A+++ K+ +++++DV MP
Sbjct: 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIAL--KHPPNVLLTDVRMP 60
Query: 72 DMDGFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130
MDG +L++ ++ L D VI +SG D + + I A Y+ KP+ E+ + +
Sbjct: 61 RMDGIELVDNILKLYPDCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQS 120
Query: 131 VR 132
++
Sbjct: 121 IQ 122
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
F +I D +MP+MDG +LL+ + + LPV+M++ + ++ GA Y++KP
Sbjct: 50 FGFIICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VIS +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 50 YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 40.0 bits (92), Expect = 0.005, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VIS +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 51 YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VIS +MP+MDG +LL+ + G LPV+M++ + ++ GA Y++KP
Sbjct: 50 YGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD +MP+MDG +LL+ + G LPV+M+ + ++ GA +++KP
Sbjct: 50 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 54/114 (47%), Gaps = 5/114 (4%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
+++L VDD Y V + A + L N + ++I+D +MP+M
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITDWNMPEM 64
Query: 74 DGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
+G L++ V + ++P+IM++ G V+ + G +Y++KP + LK
Sbjct: 65 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|2RJN|A Chain A, Crystal Structure Of An Uncharacterized Protein Q2bku2
From Neptuniibacter Caesariensis
Length = 154
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 33/140 (23%), Positives = 63/140 (45%), Gaps = 9/140 (6%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V+ VDD+ ++ T + + AL+ L+ LVISD+ MP+M G
Sbjct: 10 VMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALK--GTSVQLVISDMRMPEMGGE 67
Query: 77 KLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACD-YLLKPVRIEEL-----KNIWQH 129
LE V D+ +++SG D + + + G +LLKP E++ K +
Sbjct: 68 VFLEQVAKSYPDIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLA 127
Query: 130 VVRRKKIDAKDQNNSDNQDK 149
+R + + +++ + N+ +
Sbjct: 128 FLREENLRLQEETEAKNKQE 147
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 29/110 (26%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDD+P Y + T ALK + +DLVI D+ MP + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEMPGISG 60
Query: 76 FKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
++ E+ + D +I+L+ + + + A +Y++K +ELK
Sbjct: 61 LEVAGEIRKKKKDAKIILLTAYSHYRSDLS--SWAADEYVVKSFNFDELK 108
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 37/130 (28%), Positives = 57/130 (43%), Gaps = 9/130 (6%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
+L VDD P Y T L+ L N DLV+ D+ DG+
Sbjct: 6 ILVVDDSPXIVDVFVTXLERGGYRPITAFSGEECLEAL--NATPPDLVLLDIXXEPXDGW 63
Query: 77 KLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGAC--DYLLKPVRIEELKNIWQHVV 131
+ LE + + D+PV+ L+ P + +G+ DY+LKP +L +HV+
Sbjct: 64 ETLERIKTDPATRDIPVLXLTAK--PLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVL 121
Query: 132 RRKKIDAKDQ 141
R+ A D+
Sbjct: 122 ARRHSIAADE 131
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 30/110 (27%), Positives = 48/110 (43%), Gaps = 9/110 (8%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+R+L DD + V + A L + E +D VI D+HMP M+
Sbjct: 15 MRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEED--YDAVIVDLHMPGMN 72
Query: 75 GFKLLELV------GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
G +L+ + G+ PV++LS + P+ + GA +L KPV
Sbjct: 73 GLDMLKQLRVMQASGMRYT-PVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 57 NKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115
++ F +V+ DV +PD G+++ + + VI+L+ D + V+KG GA DY+
Sbjct: 40 DEEAFHVVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVT 99
Query: 116 KPVRIEELKNIWQHVVRRKK 135
KP E L + + R+K
Sbjct: 100 KPFNPEILLARVKRFLEREK 119
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VIS +MP+MDG +LL+ + G LPV+M+ + ++ GA Y++KP
Sbjct: 50 YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVKP 109
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 44 TSQAITALKLLRE-NKNKFDLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLSGNGDPKL 101
T + A+KL+ E N N +VI D+ MP M G ++L E+ +++ VI+++ P
Sbjct: 35 TDNGLDAMKLIEEYNPN---VVILDIEMPGMTGLEVLAEIRKKHLNIKVIIVTTFKRPGY 91
Query: 102 VMKGITHGACDYLLKPVRIEEL 123
K + + Y+LK IEEL
Sbjct: 92 FEKAVVNDVDAYVLKERSIEEL 113
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 57 NKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115
++ F +V+ DV +PD G+++ + + VI+L+ D + V+KG GA DY+
Sbjct: 40 DEEAFHVVVLDVXLPDYSGYEICRXIKETRPETWVILLTLLSDDESVLKGFEAGADDYVT 99
Query: 116 KPVRIEEL 123
KP E L
Sbjct: 100 KPFNPEIL 107
>pdb|2QXY|A Chain A, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
pdb|2QXY|B Chain B, Crystal Structure Of A Response Regulator From Thermotoga
Maritima
Length = 142
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 50 ALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITH 108
A LR + K DLV DV + + L+ + E D V +LS D L++ +
Sbjct: 40 AFTFLR--REKIDLVFVDVFEGE-ESLNLIRRIREEFPDTKVAVLSAYVDKDLIINSVKA 96
Query: 109 GACDYLLKPVRIEEL 123
GA DY+LKP R++ L
Sbjct: 97 GAVDYILKPFRLDYL 111
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 37.4 bits (85), Expect = 0.024, Method: Composition-based stats.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 9/118 (7%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
+VL VDD Y V AL+ L E DL++ + MP MDG
Sbjct: 4 KVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEFTP--DLIVLXIMMPVMDG 61
Query: 76 FKLLELVGLEMD---LPVIMLSGNGDPKLVMKGITHGACDYLLKPVR----IEELKNI 126
F +L+ + + + +PVI+L+ G + ++ GA + KP IEE+K++
Sbjct: 62 FTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHL 119
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 36.6 bits (83), Expect = 0.042, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VIS +MP+MDG +LL+ + G LPV+M+ + ++ GA +++KP
Sbjct: 50 YGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVKP 109
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 36.6 bits (83), Expect = 0.045, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
DL++ +P G + ++ + E D+PV+ML+ G+ + ++G+ GA D + KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 119 RIEELKNIWQHVVRR 133
+EL + V+RR
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 36.6 bits (83), Expect = 0.046, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 5/114 (4%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73
+++L VDD Y V + A + L N + ++I+ +MP+M
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADT-KVLITAWNMPEM 64
Query: 74 DGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
+G L++ V + ++P+IM++ G V+ + G +Y++KP + LK
Sbjct: 65 NGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKPFTPQVLK 118
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
DLPV++ + D L ++GI GA D+++KP
Sbjct: 80 DLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 36.6 bits (83), Expect = 0.047, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 62 DLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
DL++ +P G + ++ + + D+PV+ML+ G+ + ++G+ GA D + KP
Sbjct: 48 DLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPF 107
Query: 119 RIEELKNIWQHVVRR 133
+EL + V+RR
Sbjct: 108 SPKELVARIKAVMRR 122
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 36.6 bits (83), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 40/73 (54%), Gaps = 6/73 (8%)
Query: 55 RENKNKF-----DLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITH 108
RE K+ D+V D+ MP+M+G + E++ ++ + +I+ S G +V++ I
Sbjct: 15 REAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKA 74
Query: 109 GACDYLLKPVRIE 121
GA D+++ +E
Sbjct: 75 GAKDFIVNTAAVE 87
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 36.2 bits (82), Expect = 0.061, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL----PVIMLSGNGDPKL 101
+A +K L ++++ DV MP +DG LL + DL P++ L+ D
Sbjct: 38 EAFDKVKELTSKGENYNMIFMDVQMPKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSN 95
Query: 102 VMKGITHGACDYLLKPVRIEELKNI 126
+ + + G +L KP++ +LK I
Sbjct: 96 IKECLESGMNGFLSKPIKRPKLKTI 120
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 57 NKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116
++ D+V+ D+ +P M G + + + +PVIM++ + G+ GA DY+ K
Sbjct: 45 DRAGADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVTARDSEIDKVVGLELGADDYVTK 104
Query: 117 PVRIEELKNIWQHVVRR 133
P EL + V+RR
Sbjct: 105 PYSARELIARIRAVLRR 121
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 36.2 bits (82), Expect = 0.065, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 55 RENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL---PVIMLSGNGDPKLVMKGITHGAC 111
R + + LV+ D+++PD G +L+LV PV++L+ D + + + GA
Sbjct: 54 RVSAGRAQLVLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGAN 113
Query: 112 DYLLKPVRIEELKN 125
Y+ KPV E N
Sbjct: 114 VYITKPVNYENFAN 127
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 23/85 (27%), Positives = 41/85 (48%), Gaps = 6/85 (7%)
Query: 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL----PVIMLSGNGDPKL 101
+A +K L ++++ DV MP +DG LL + DL P++ L+ D
Sbjct: 37 EAFDKVKELTSKGENYNMIFMDVQMPKVDG--LLSTKMIRRDLGYTSPIVALTAFADDSN 94
Query: 102 VMKGITHGACDYLLKPVRIEELKNI 126
+ + + G +L KP++ +LK I
Sbjct: 95 IKECLESGMNGFLSKPIKRPKLKTI 119
>pdb|3RQI|A Chain A, Crystal Structure Of A Response Regulator Protein From
Burkholderia Pseudomallei With A Phosphorylated Aspartic
Acid, Calcium Ion And Citrate
Length = 184
Score = 35.8 bits (81), Expect = 0.078, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 18 LAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFK 77
L +DD+ Y V ALKL KF+ + +H+ + G
Sbjct: 11 LVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKL--AGAEKFEFITVXLHLGNDSGLS 68
Query: 78 LLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
L+ L L+ D +++L+G ++ + GA +YL KP +E +
Sbjct: 69 LIAPLCDLQPDARILVLTGYASIATAVQAVKDGADNYLAKPANVESI 115
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 35.4 bits (80), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 66/133 (49%), Gaps = 3/133 (2%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
VL ++DD V + + A KLL E F++V+ D+ +PD++G
Sbjct: 3 VLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEKH--FNVVLLDLLLPDVNGL 60
Query: 77 KLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135
++L+ + + VI+++G+G K ++ + GA D+L KP +EE++ + +K
Sbjct: 61 EILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120
Query: 136 IDAKDQNNSDNQD 148
+ +++ +D
Sbjct: 121 LRKENELLRREKD 133
>pdb|3A0R|B Chain B, Crystal Structure Of Histidine Kinase Thka (Tm1359) In
Complex With Response Regulator Protein Trra (Tm1360)
pdb|3A10|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Semet, L89m)
Length = 116
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 5/110 (4%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDD+P Y + T ALK + +DLVI D+ P + G
Sbjct: 3 RILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALK--KFFSGNYDLVILDIEXPGISG 60
Query: 76 FKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELK 124
++ E+ + D +I+L+ + + A +Y++K +ELK
Sbjct: 61 LEVAGEIRKKKKDAKIILLTAYSHYR--SDXSSWAADEYVVKSFNFDELK 108
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGD--PKLVMKGITHGACDYLLKP 117
K D++ D+ MP+++G + L+L+ + VIM+S + + ++ + +GA D++ KP
Sbjct: 71 KPDVITMDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIEALRNGAVDFITKP 130
>pdb|3LUF|A Chain A, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3LUF|B Chain B, Structure Of Probable Two-Component System Response
RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|A Chain A, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
pdb|3MF4|B Chain B, Crystal Structure Of Putative Two-Component System
Response RegulatorGGDEF DOMAIN PROTEIN
Length = 259
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 9/134 (6%)
Query: 15 LRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMD 74
+ VL VDD V S A AL L E LV+ D + P++D
Sbjct: 125 IEVLVVDDSRTSRHRTXAQLRKQLLQVHEASHAREALATL-EQHPAIRLVLVDYYXPEID 183
Query: 75 GFKLLELVGL---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131
G L+ + + L +I +S + L + + GA D+L +P EEL+ H
Sbjct: 184 GISLVRXLRERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSH-- 241
Query: 132 RRKKIDAKDQNNSD 145
++A +Q NS+
Sbjct: 242 ---NLEALEQFNSE 252
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 25/110 (22%), Positives = 43/110 (39%), Gaps = 5/110 (4%)
Query: 17 VLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76
V VDDD +H+ + + LL+ K +V+ D+ P DG+
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK--KGFSGVVLLDIXXPGXDGW 67
Query: 77 KLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
+ + LE + ++ L+ P G+ DY+ KP E+L
Sbjct: 68 DTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPFDNEDL 117
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 62 DLVISDVHMPDMDGFKLLE-LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
D+V + MP MDG L ++ + + VIM+S G +LV + GA +++KP+
Sbjct: 85 DIVTLXITMPKMDGITCLSNIMEFDKNARVIMISALGKEQLVKDCLIKGAKTFIVKPL 142
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 63 LVISDVHMPDMDGFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119
+++ D+++P DG ++L+ + + +PV++++ + +PK + ++ Y++KP+
Sbjct: 65 VILLDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLE 124
Query: 120 IEELKNIWQHVVR 132
I+ L Q ++
Sbjct: 125 IDRLTETVQTFIK 137
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
RVL V+D+P H A L + + K+DL+I D+ +P +G
Sbjct: 7 RVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIILDIGLPIANG 66
Query: 76 FKLLELV---GLEMDLPVIMLSGN 96
F++ V G P+++L+ N
Sbjct: 67 FEVXSAVRKPGANQHTPIVILTDN 90
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Query: 61 FDLVISDVHMPDMDGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+ VISD + P+ DG +LL+ + G LPV+ ++ + ++ GA +++KP
Sbjct: 50 YGFVISDWNXPNXDGLELLKTIRADGAXSALPVLXVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 55 RENKNKF-----DLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLSGNGDPKLVMKGITH 108
RE K+ D+V D+ MP+M+G + E++ ++ + +I+ S G +V++ I
Sbjct: 15 REAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKA 74
Query: 109 GACDYLLKPVRIE 121
GA +++ +E
Sbjct: 75 GAKGFIVNTAAVE 87
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIE 121
+LVI D+++P +G L + + ++ ++ L+G + + G+ GA DY+ KP
Sbjct: 49 NLVIMDINLPGKNGLLLARELREQANVALMFLTGRDNEVDKILGLEIGADDYITKPFNPR 108
Query: 122 EL 123
EL
Sbjct: 109 EL 110
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIE 121
+LVI D+++P +G L + + ++ + L+G + + G+ GA DY+ KP
Sbjct: 49 NLVIXDINLPGKNGLLLARELREQANVALXFLTGRDNEVDKILGLEIGADDYITKPFNPR 108
Query: 122 EL 123
EL
Sbjct: 109 EL 110
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 49/113 (43%), Gaps = 34/113 (30%)
Query: 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV---------------GLEMD--- 87
+AITA+ N + +DLV+ DV MP +DG K L+ G+++
Sbjct: 43 EAITAI-----NSSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSE 97
Query: 88 -----------LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQH 129
LP+I ++ N + + +G ++ KPV +++L+ Q
Sbjct: 98 NEQVCMRPTNRLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQ 150
>pdb|3CRN|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
pdb|3CRN|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
Protein (chey- Like) From Methanospirillum Hungatei Jf-1
Length = 132
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 3/109 (2%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDDD Y V + A L + EN+ F+L + + +PD +G
Sbjct: 5 RILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKI-ENEF-FNLALFXIKLPDXEG 62
Query: 76 FKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEEL 123
+LLE L I ++G + + + GA Y+ KPV +L
Sbjct: 63 TELLEKAHKLRPGXKKIXVTGYASLENSVFSLNAGADAYIXKPVNPRDL 111
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 63 LVISDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118
L+I++ +MP MD F L+ +PVI LSG K + + G D++ KPV
Sbjct: 55 LIITEANMPKISGMDLFNSLKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPV 113
>pdb|2QSJ|A Chain A, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
pdb|2QSJ|B Chain B, Crystal Structure Of A Luxr Family Dna-Binding Response
Regulator From Silicibacter Pomeroyi
Length = 154
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 43 TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFK-LLELVGLEMDLPVIMLSGNGDPKL 101
T S A+ L E N DL++ DV++PD + L+ L + V ++SG D +L
Sbjct: 37 TVSDALAFL----EADNTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAVALISGETDHEL 92
Query: 102 VMKGITHGACDYLLK 116
+ + GA ++ K
Sbjct: 93 IRAALEAGADGFIPK 107
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 31/108 (28%), Positives = 46/108 (42%), Gaps = 18/108 (16%)
Query: 9 DQFPSGLRVLAVDDD-PXXXXXXXXXXXXXQYHVTTTSQAITALKLLRE----------- 56
D+F G RVL VDD+ V AL+L+ E
Sbjct: 56 DEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSV 115
Query: 57 NKNKFDLVISDVHMPDMDGFKLL-ELVGLE----MDLPVIMLSGNGDP 99
+K FD + D MP+MDG++ E+ +E + P+I +SG+ DP
Sbjct: 116 DKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRTPIIAVSGH-DP 162
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 30.4 bits (67), Expect = 2.9, Method: Composition-based stats.
Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 10/107 (9%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITA-LKLLRENKNKFDLVIS--DVHMPD 72
R+L VDDD + V A +KL + F+ I D+ MP
Sbjct: 8 RILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL-----STFEPAIMTLDLSMPK 62
Query: 73 MDGFKLLELVGLE--MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117
+DG ++ + + P I++ D + + +T GA DYL KP
Sbjct: 63 LDGLDVIRSLRQNKVANQPKILVVSGLDKAKLQQAVTEGADDYLEKP 109
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/107 (24%), Positives = 46/107 (42%), Gaps = 2/107 (1%)
Query: 16 RVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75
R+L VDDD + AL +RE + L+ +P +G
Sbjct: 7 RILVVDDDASLAEXLTIVLRGEGFDTAVIGDGTQALTAVRELRPDLVLLDL--XLPGXNG 64
Query: 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE 122
+ ++ + +P++ L+ D V+ G+ GA DY+ KP + +E
Sbjct: 65 IDVCRVLRADSGVPIVXLTAKTDTVDVVLGLESGADDYIXKPFKPKE 111
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 30.4 bits (67), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 9/121 (7%)
Query: 13 SGLRVLAVDDDPXXXXXXXXXXXXXQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72
+GL+VL +D++ VTT S L+++ ++ +V DV MP
Sbjct: 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV---SHEHKVVFMDVCMPG 62
Query: 73 MDGFKLL-----ELVGLEMDLPVIM-LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNI 126
++ +++ + P+++ LSGN D K ++ G LLKPV ++ ++++
Sbjct: 63 VENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDV 122
Query: 127 W 127
Sbjct: 123 L 123
>pdb|3EQZ|A Chain A, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
pdb|3EQZ|B Chain B, Crystal Structure Of A Response Regulator From Colwellia
Psychrerythraea
Length = 135
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Query: 59 NKFDLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLSG 95
NK D++I D+ MPDMDG +++ L + +I++SG
Sbjct: 45 NKQDIIILDLMMPDMDGIEVIRHLAEHKSPASLILISG 82
>pdb|3H5I|A Chain A, Crystal Structure Of The N-Terminal Domain Of A Response
RegulatorSENSORY BOXGGDEF 3-Domain Protein From
Carboxydothermus Hydrogenoformans
Length = 140
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 62 DLVISDVHMPD-MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI 120
DL++ D+ + + MDG + + +LPV+ L+ + +P +V K + A Y++K
Sbjct: 52 DLILMDIELGEGMDGVQTALAIQQISELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATE 111
Query: 121 EELKNIWQHVVR 132
+ L I + +R
Sbjct: 112 QVLITIVEMALR 123
>pdb|3KYJ|B Chain B, Crystal Structure Of The P1 Domain Of Chea3 In Complex
With Chey6 From R. Sphaeroides
Length = 145
Score = 29.6 bits (65), Expect = 6.3, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 62 DLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94
DL++ D+ MP MDG + L L+ + MLS
Sbjct: 62 DLILLDIEMPVMDGMEFLRHAKLKTRAKICMLS 94
>pdb|3GZX|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase In Complex
With Biphenyl From Comamonas Testosteroni Sp. Strain
B-356
pdb|3GZY|A Chain A, Crystal Structure Of The Biphenyl Dioxygenase From
Comamonas Testosteroni Sp. Strain B-356
Length = 457
Score = 28.9 bits (63), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 359 SHSGNILQGMPTSLELDQLQLNKN 382
SH +L G+P ++L Q+QL+KN
Sbjct: 238 SHLSGVLAGLPPEMDLTQIQLSKN 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.385
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,406,637
Number of Sequences: 62578
Number of extensions: 787799
Number of successful extensions: 1452
Number of sequences better than 100.0: 156
Number of HSP's better than 100.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 101
Number of HSP's that attempted gapping in prelim test: 1302
Number of HSP's gapped (non-prelim): 159
length of query: 663
length of database: 14,973,337
effective HSP length: 105
effective length of query: 558
effective length of database: 8,402,647
effective search space: 4688677026
effective search space used: 4688677026
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)