Query 006057
Match_columns 663
No_of_seqs 369 out of 1884
Neff 5.0
Searched_HMMs 46136
Date Thu Mar 28 17:44:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006057.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006057hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.8 2.8E-20 6.1E-25 189.1 16.6 118 15-135 1-120 (229)
2 PLN03162 golden-2 like transcr 99.8 2.3E-21 4.9E-26 203.3 7.2 69 195-263 231-299 (526)
3 COG4753 Response regulator con 99.8 9.5E-19 2.1E-23 192.8 14.4 119 15-135 2-124 (475)
4 COG4565 CitB Response regulato 99.8 1E-17 2.2E-22 167.4 17.5 121 15-137 1-124 (224)
5 COG2204 AtoC Response regulato 99.8 7.5E-18 1.6E-22 185.9 16.5 120 15-136 5-125 (464)
6 PF00072 Response_reg: Respons 99.7 4.5E-17 9.7E-22 142.4 15.5 110 17-128 1-112 (112)
7 COG2197 CitB Response regulato 99.7 3E-17 6.5E-22 164.7 12.1 122 15-138 1-125 (211)
8 COG4566 TtrR Response regulato 99.7 1.4E-16 3.1E-21 156.6 13.6 121 12-134 2-123 (202)
9 COG0784 CheY FOG: CheY-like re 99.7 1.6E-15 3.4E-20 135.8 16.8 120 13-133 4-126 (130)
10 PRK10046 dpiA two-component re 99.7 1.5E-15 3.2E-20 151.6 17.4 123 12-136 2-127 (225)
11 PLN03029 type-a response regul 99.7 2.6E-15 5.7E-20 151.2 16.9 122 13-134 7-149 (222)
12 PRK10529 DNA-binding transcrip 99.6 5.2E-15 1.1E-19 144.1 17.4 118 15-134 2-119 (225)
13 PRK11173 two-component respons 99.6 7.8E-15 1.7E-19 145.1 17.6 119 14-134 3-121 (237)
14 COG3437 Response regulator con 99.6 1.1E-15 2.3E-20 162.6 12.0 121 12-134 12-136 (360)
15 TIGR01557 myb_SHAQKYF myb-like 99.6 2.7E-16 5.8E-21 128.0 5.5 55 199-253 1-56 (57)
16 PRK10816 DNA-binding transcrip 99.6 9.7E-15 2.1E-19 142.3 17.3 118 15-134 1-119 (223)
17 PRK10766 DNA-binding transcrip 99.6 1.3E-14 2.7E-19 141.0 17.2 118 15-134 3-120 (221)
18 PRK10643 DNA-binding transcrip 99.6 1.5E-14 3.3E-19 139.2 17.4 118 15-134 1-119 (222)
19 PRK09836 DNA-binding transcrip 99.6 1.5E-14 3.2E-19 141.4 17.4 117 15-133 1-118 (227)
20 PRK11517 transcriptional regul 99.6 2.5E-14 5.3E-19 138.5 17.2 117 15-133 1-117 (223)
21 PRK10701 DNA-binding transcrip 99.6 2.7E-14 5.8E-19 141.3 17.3 118 15-134 2-119 (240)
22 TIGR02154 PhoB phosphate regul 99.6 3E-14 6.6E-19 137.2 17.1 119 14-134 2-123 (226)
23 PRK10336 DNA-binding transcrip 99.6 2.9E-14 6.3E-19 137.3 16.9 118 15-134 1-119 (219)
24 PRK10955 DNA-binding transcrip 99.6 2.9E-14 6.3E-19 138.8 16.9 117 15-134 2-118 (232)
25 PRK10161 transcriptional regul 99.6 3.4E-14 7.3E-19 139.0 17.2 117 15-133 3-122 (229)
26 PRK13856 two-component respons 99.6 3.3E-14 7.1E-19 141.5 17.1 117 16-134 3-120 (241)
27 CHL00148 orf27 Ycf27; Reviewed 99.6 4.4E-14 9.6E-19 138.3 17.6 119 14-134 6-124 (240)
28 KOG0519 Sensory transduction h 99.6 6.2E-15 1.4E-19 173.1 13.6 122 10-132 662-785 (786)
29 COG3706 PleD Response regulato 99.6 2E-14 4.4E-19 157.9 16.6 123 13-137 131-256 (435)
30 PRK09468 ompR osmolarity respo 99.6 5.7E-14 1.2E-18 138.6 17.3 119 14-134 5-124 (239)
31 TIGR03787 marine_sort_RR prote 99.6 6.4E-14 1.4E-18 136.6 17.4 117 16-134 2-121 (227)
32 PRK10430 DNA-binding transcrip 99.6 5.3E-14 1.2E-18 141.4 17.0 120 15-134 2-124 (239)
33 PRK11083 DNA-binding response 99.6 5.8E-14 1.3E-18 135.8 16.6 118 15-134 4-122 (228)
34 PRK15347 two component system 99.6 4.3E-14 9.3E-19 166.1 17.2 119 12-132 688-811 (921)
35 PRK10840 transcriptional regul 99.6 7.7E-14 1.7E-18 137.6 15.9 121 14-136 3-129 (216)
36 PRK11107 hybrid sensory histid 99.5 6.6E-14 1.4E-18 164.2 17.1 119 13-133 666-787 (919)
37 PRK10841 hybrid sensory kinase 99.5 7.9E-14 1.7E-18 166.5 17.8 120 13-134 800-920 (924)
38 COG3947 Response regulator con 99.5 2.1E-14 4.5E-19 149.1 10.5 116 15-134 1-117 (361)
39 TIGR01387 cztR_silR_copR heavy 99.5 2.2E-13 4.7E-18 130.9 16.4 116 17-134 1-117 (218)
40 PRK09958 DNA-binding transcrip 99.5 2.2E-13 4.7E-18 130.5 16.2 118 15-134 1-120 (204)
41 PRK09483 response regulator; P 99.5 2.6E-13 5.6E-18 131.2 16.1 120 15-136 2-124 (217)
42 PRK11466 hybrid sensory histid 99.5 1.8E-13 3.8E-18 161.4 16.7 121 13-134 680-801 (914)
43 COG4567 Response regulator con 99.5 1.4E-13 3.1E-18 131.5 12.7 111 16-128 11-122 (182)
44 PRK10360 DNA-binding transcrip 99.5 4.1E-13 9E-18 127.7 15.9 116 15-134 2-119 (196)
45 PRK09581 pleD response regulat 99.5 1.1E-13 2.5E-18 148.0 13.0 118 13-133 154-274 (457)
46 PRK11697 putative two-componen 99.5 4.2E-13 9.1E-18 133.1 16.0 115 15-133 2-118 (238)
47 PRK14084 two-component respons 99.5 5E-13 1.1E-17 133.6 16.5 116 15-134 1-119 (246)
48 TIGR02875 spore_0_A sporulatio 99.5 4.9E-13 1.1E-17 135.6 16.4 118 14-133 2-124 (262)
49 PRK10710 DNA-binding transcrip 99.5 1.3E-12 2.7E-17 128.0 17.6 118 15-134 11-128 (240)
50 TIGR02956 TMAO_torS TMAO reduc 99.5 4E-13 8.7E-18 158.9 16.4 118 14-133 702-823 (968)
51 PRK09935 transcriptional regul 99.5 1.3E-12 2.8E-17 124.8 16.7 119 14-134 3-124 (210)
52 PRK10365 transcriptional regul 99.5 4.9E-13 1.1E-17 145.5 15.5 120 13-134 4-124 (441)
53 PRK15479 transcriptional regul 99.5 2E-12 4.2E-17 124.5 17.3 118 15-134 1-119 (221)
54 PRK11361 acetoacetate metaboli 99.5 8.9E-13 1.9E-17 144.3 16.8 120 13-134 3-123 (457)
55 PRK15115 response regulator Gl 99.5 7.1E-13 1.5E-17 144.9 15.9 118 14-133 5-123 (444)
56 PRK10923 glnG nitrogen regulat 99.5 1.3E-12 2.8E-17 144.1 17.3 118 15-134 4-122 (469)
57 PRK11091 aerobic respiration c 99.5 7.6E-13 1.6E-17 154.1 16.1 117 14-133 525-645 (779)
58 PRK12555 chemotaxis-specific m 99.4 1.4E-12 3E-17 138.6 15.7 115 15-131 1-128 (337)
59 PRK09959 hybrid sensory histid 99.4 1.2E-12 2.6E-17 158.9 17.0 119 12-132 956-1075(1197)
60 TIGR02915 PEP_resp_reg putativ 99.4 1.6E-12 3.5E-17 142.2 15.9 114 17-134 1-120 (445)
61 PRK09390 fixJ response regulat 99.4 3E-12 6.4E-17 120.1 15.0 120 12-133 1-121 (202)
62 PRK10610 chemotaxis regulatory 99.4 1.1E-11 2.3E-16 106.1 17.0 118 14-133 5-126 (129)
63 PRK13435 response regulator; P 99.4 4.5E-12 9.7E-17 116.7 15.3 117 14-135 5-123 (145)
64 TIGR01818 ntrC nitrogen regula 99.4 2.8E-12 6.2E-17 140.8 16.0 116 17-134 1-117 (463)
65 PRK09581 pleD response regulat 99.4 6.9E-12 1.5E-16 134.3 17.5 119 15-135 3-124 (457)
66 PRK11475 DNA-binding transcrip 99.4 1.4E-12 2.9E-17 131.0 10.2 109 27-137 3-119 (207)
67 PRK10100 DNA-binding transcrip 99.4 5.4E-12 1.2E-16 127.4 13.6 118 14-137 10-131 (216)
68 PRK00742 chemotaxis-specific m 99.4 9.6E-12 2.1E-16 132.9 16.1 104 14-119 3-110 (354)
69 PRK15369 two component system 99.4 2.4E-11 5.1E-16 114.5 16.3 120 13-134 2-124 (211)
70 PRK15411 rcsA colanic acid cap 99.4 5.2E-12 1.1E-16 126.3 12.2 149 15-171 1-156 (207)
71 PRK10403 transcriptional regul 99.4 2.3E-11 4.9E-16 115.8 16.1 119 14-134 6-127 (215)
72 PRK13558 bacterio-opsin activa 99.3 1E-11 2.2E-16 142.3 14.6 118 14-133 7-127 (665)
73 PRK10651 transcriptional regul 99.3 4.4E-11 9.5E-16 114.2 16.0 119 14-134 6-127 (216)
74 COG2201 CheB Chemotaxis respon 99.3 2.6E-11 5.6E-16 130.2 15.0 103 15-119 2-108 (350)
75 PRK09191 two-component respons 99.3 1E-10 2.2E-15 117.7 15.8 116 14-133 137-254 (261)
76 COG3707 AmiR Response regulato 99.2 5.2E-11 1.1E-15 118.0 12.0 121 14-136 5-126 (194)
77 PRK13837 two-component VirA-li 99.2 1.4E-10 2.9E-15 137.2 16.6 118 14-134 697-815 (828)
78 cd00156 REC Signal receiver do 99.2 3.6E-10 7.8E-15 91.6 12.9 111 18-130 1-112 (113)
79 PRK13557 histidine kinase; Pro 99.1 8.5E-10 1.8E-14 120.9 15.7 119 14-133 415-535 (540)
80 PRK10693 response regulator of 99.1 1.2E-09 2.7E-14 115.0 12.5 90 43-134 2-93 (303)
81 PRK15029 arginine decarboxylas 98.9 1.6E-08 3.4E-13 118.7 14.1 117 15-133 1-133 (755)
82 COG3279 LytT Response regulato 98.9 1.4E-08 3E-13 104.6 11.1 115 15-133 2-119 (244)
83 PRK11107 hybrid sensory histid 98.2 1.3E-05 2.8E-10 94.9 14.6 114 12-131 534-650 (919)
84 COG3706 PleD Response regulato 98.0 6.9E-06 1.5E-10 91.3 5.5 96 39-137 13-108 (435)
85 smart00448 REC cheY-homologous 97.4 0.001 2.3E-08 46.7 8.2 55 15-71 1-55 (55)
86 PF06490 FleQ: Flagellar regul 97.2 0.0025 5.4E-08 58.3 10.2 106 16-130 1-107 (109)
87 cd02071 MM_CoA_mut_B12_BD meth 96.4 0.12 2.5E-06 48.0 13.9 111 16-128 1-121 (122)
88 PRK02261 methylaspartate mutas 95.9 0.35 7.6E-06 46.2 14.9 116 14-132 3-135 (137)
89 PRK10618 phosphotransfer inter 95.6 0.015 3.2E-07 70.7 5.8 56 11-75 686-741 (894)
90 TIGR00640 acid_CoA_mut_C methy 95.5 0.56 1.2E-05 44.6 14.9 117 14-132 2-128 (132)
91 PF03709 OKR_DC_1_N: Orn/Lys/A 95.4 0.16 3.4E-06 46.8 10.3 105 27-133 6-114 (115)
92 cd02067 B12-binding B12 bindin 95.3 0.24 5.2E-06 45.1 11.3 95 21-117 10-110 (119)
93 PF00249 Myb_DNA-binding: Myb- 94.7 0.048 1E-06 42.5 4.2 48 201-251 1-48 (48)
94 TIGR03815 CpaE_hom_Actino heli 93.0 0.36 7.8E-06 51.6 8.3 84 38-130 1-85 (322)
95 PRK15399 lysine decarboxylase 92.9 1 2.3E-05 53.7 12.7 115 15-133 1-123 (713)
96 PRK15400 lysine decarboxylase 92.4 1.1 2.3E-05 53.7 11.9 115 15-133 1-123 (714)
97 TIGR01501 MthylAspMutase methy 92.3 3.2 6.9E-05 39.9 12.9 110 21-132 12-133 (134)
98 cd04728 ThiG Thiazole synthase 91.8 1.7 3.7E-05 45.7 11.2 92 36-135 121-228 (248)
99 PF02310 B12-binding: B12 bind 91.7 3.8 8.2E-05 36.9 12.2 92 22-116 12-111 (121)
100 PRK00208 thiG thiazole synthas 91.4 1.8 3.8E-05 45.7 10.8 92 36-135 121-228 (250)
101 PRK01130 N-acetylmannosamine-6 90.0 5.2 0.00011 40.5 12.7 84 30-116 110-202 (221)
102 COG4999 Uncharacterized domain 89.0 1.4 3.1E-05 41.8 7.0 115 6-127 3-121 (140)
103 cd02070 corrinoid_protein_B12- 88.0 8.1 0.00017 38.8 12.3 99 14-117 82-192 (201)
104 PF10087 DUF2325: Uncharacteri 87.8 4.7 0.0001 35.9 9.4 90 16-106 1-93 (97)
105 PRK00043 thiE thiamine-phospha 87.3 8.4 0.00018 38.1 11.9 84 43-130 110-207 (212)
106 CHL00162 thiG thiamin biosynth 86.6 14 0.0003 39.3 13.3 101 31-135 130-242 (267)
107 cd02069 methionine_synthase_B1 86.4 9.7 0.00021 39.0 12.0 109 13-123 87-208 (213)
108 COG2185 Sbm Methylmalonyl-CoA 86.4 18 0.00039 35.3 13.0 116 13-132 11-138 (143)
109 PF01408 GFO_IDH_MocA: Oxidore 85.6 19 0.00042 32.0 12.3 107 15-134 1-113 (120)
110 PRK03958 tRNA 2'-O-methylase; 85.4 9.1 0.0002 38.5 10.8 95 15-117 32-129 (176)
111 cd02072 Glm_B12_BD B12 binding 85.1 18 0.00038 34.6 12.2 105 21-128 10-127 (128)
112 cd04729 NanE N-acetylmannosami 84.7 12 0.00026 37.8 11.7 75 39-116 124-206 (219)
113 smart00426 TEA TEA domain. 84.2 0.7 1.5E-05 39.5 2.1 47 202-249 4-67 (68)
114 cd02068 radical_SAM_B12_BD B12 82.3 14 0.00029 34.1 10.0 107 25-133 3-113 (127)
115 PRK09426 methylmalonyl-CoA mut 81.1 26 0.00056 42.4 14.2 115 16-132 584-708 (714)
116 KOG3841 TEF-1 and related tran 79.7 6.2 0.00014 43.8 7.7 51 199-250 74-141 (455)
117 TIGR03151 enACPred_II putative 78.9 17 0.00037 39.2 10.9 85 30-117 101-191 (307)
118 PF05690 ThiG: Thiazole biosyn 78.2 15 0.00033 38.7 9.7 101 31-135 116-228 (247)
119 TIGR02370 pyl_corrinoid methyl 78.2 21 0.00045 36.0 10.6 97 15-116 85-193 (197)
120 TIGR03239 GarL 2-dehydro-3-deo 76.8 28 0.0006 36.6 11.4 80 48-129 23-105 (249)
121 PRK05458 guanosine 5'-monophos 76.4 35 0.00075 37.5 12.4 98 16-116 113-230 (326)
122 PRK10558 alpha-dehydro-beta-de 75.8 27 0.0006 36.8 11.1 99 29-129 9-112 (256)
123 PLN02591 tryptophan synthase 75.2 7.9 0.00017 40.8 6.9 59 74-132 65-129 (250)
124 PTZ00314 inosine-5'-monophosph 74.9 24 0.00051 40.8 11.1 34 84-117 341-374 (495)
125 PRK10128 2-keto-3-deoxy-L-rham 74.6 33 0.00072 36.5 11.4 99 29-129 8-111 (267)
126 cd04724 Tryptophan_synthase_al 73.9 13 0.00028 38.7 8.0 58 75-132 64-127 (242)
127 PRK11840 bifunctional sulfur c 73.7 53 0.0011 36.2 12.7 96 36-135 195-302 (326)
128 PRK05567 inosine 5'-monophosph 73.6 26 0.00057 40.1 11.1 100 13-116 239-360 (486)
129 COG2022 ThiG Uncharacterized e 73.6 24 0.00052 37.2 9.7 99 31-133 123-233 (262)
130 cd00564 TMP_TenI Thiamine mono 73.4 25 0.00054 33.8 9.4 70 43-116 101-178 (196)
131 cd04730 NPD_like 2-Nitropropan 73.4 46 0.001 33.5 11.8 80 34-116 98-185 (236)
132 PLN02274 inosine-5'-monophosph 73.2 41 0.00089 39.0 12.5 100 14-116 260-380 (505)
133 PRK13111 trpA tryptophan synth 72.8 11 0.00025 39.7 7.4 58 75-132 76-140 (258)
134 PF03602 Cons_hypoth95: Conser 71.8 16 0.00036 36.4 7.9 67 15-83 66-138 (183)
135 COG0512 PabA Anthranilate/para 71.5 12 0.00027 38.0 6.9 77 14-94 1-81 (191)
136 TIGR00007 phosphoribosylformim 71.3 46 0.001 33.7 11.2 68 46-115 146-217 (230)
137 TIGR02026 BchE magnesium-proto 71.3 45 0.00097 38.3 12.3 108 23-133 21-138 (497)
138 CHL00200 trpA tryptophan synth 71.2 12 0.00025 39.8 7.0 58 75-132 79-142 (263)
139 TIGR01334 modD putative molybd 71.1 18 0.00038 38.9 8.4 94 17-114 159-261 (277)
140 TIGR01037 pyrD_sub1_fam dihydr 70.9 51 0.0011 34.9 11.9 60 77-136 224-289 (300)
141 PRK00278 trpC indole-3-glycero 70.7 81 0.0017 33.2 13.1 86 26-115 148-239 (260)
142 PF01596 Methyltransf_3: O-met 70.3 29 0.00064 35.4 9.5 69 10-80 66-139 (205)
143 PRK06843 inosine 5-monophospha 69.9 48 0.001 37.5 11.8 101 13-116 164-285 (404)
144 cd04727 pdxS PdxS is a subunit 69.0 31 0.00068 37.2 9.6 90 41-133 116-247 (283)
145 PRK07896 nicotinate-nucleotide 68.9 25 0.00053 38.0 8.9 94 17-114 173-272 (289)
146 cd03823 GT1_ExpE7_like This fa 68.8 76 0.0017 32.2 12.2 66 61-132 263-328 (359)
147 cd00381 IMPDH IMPDH: The catal 68.8 53 0.0012 35.8 11.6 98 14-115 106-225 (325)
148 PRK08385 nicotinate-nucleotide 68.0 48 0.001 35.6 10.8 93 17-114 157-257 (278)
149 PRK10669 putative cation:proto 67.7 44 0.00096 38.7 11.4 66 60-131 481-547 (558)
150 TIGR02311 HpaI 2,4-dihydroxyhe 67.4 63 0.0014 33.8 11.4 82 47-130 22-106 (249)
151 PF09936 Methyltrn_RNA_4: SAM- 67.3 41 0.00088 34.2 9.5 99 16-119 44-161 (185)
152 PRK12704 phosphodiesterase; Pr 67.1 11 0.00024 43.7 6.3 45 89-133 251-297 (520)
153 TIGR00343 pyridoxal 5'-phospha 67.0 35 0.00076 36.9 9.5 60 74-133 184-250 (287)
154 TIGR00262 trpA tryptophan synt 66.3 20 0.00043 37.7 7.5 58 74-131 73-137 (256)
155 PF03060 NMO: Nitronate monoox 65.9 47 0.001 36.1 10.5 82 32-116 130-219 (330)
156 TIGR01761 thiaz-red thiazoliny 65.9 61 0.0013 35.7 11.4 106 13-133 2-114 (343)
157 PF07688 KaiA: KaiA domain; I 65.7 20 0.00044 38.2 7.2 113 16-134 2-120 (283)
158 cd00331 IGPS Indole-3-glycerol 65.4 1.1E+02 0.0023 30.8 12.4 77 35-115 118-200 (217)
159 cd01424 MGS_CPS_II Methylglyox 65.3 51 0.0011 29.7 9.0 24 21-44 9-32 (110)
160 cd03813 GT1_like_3 This family 65.3 53 0.0011 37.1 11.1 108 14-133 324-442 (475)
161 PLN02871 UDP-sulfoquinovose:DA 65.1 69 0.0015 35.9 12.0 105 14-132 290-399 (465)
162 PRK15484 lipopolysaccharide 1, 65.0 92 0.002 33.9 12.6 110 14-133 224-344 (380)
163 PRK01911 ppnK inorganic polyph 64.4 63 0.0014 34.8 11.0 101 15-134 1-121 (292)
164 cd04726 KGPDC_HPS 3-Keto-L-gul 64.4 1.1E+02 0.0023 30.2 11.9 99 14-116 77-186 (202)
165 TIGR03088 stp2 sugar transfera 64.0 52 0.0011 34.9 10.3 107 14-132 229-337 (374)
166 PRK12724 flagellar biosynthesi 63.7 76 0.0017 36.3 11.8 98 14-115 252-366 (432)
167 PRK05749 3-deoxy-D-manno-octul 63.3 61 0.0013 35.6 11.0 111 14-132 262-387 (425)
168 PF00534 Glycos_transf_1: Glyc 62.6 69 0.0015 29.9 9.8 109 14-134 47-159 (172)
169 cd04962 GT1_like_5 This family 62.4 66 0.0014 33.6 10.6 106 15-132 228-335 (371)
170 cd02065 B12-binding_like B12 b 61.8 53 0.0011 29.4 8.5 72 21-94 10-87 (125)
171 PRK07259 dihydroorotate dehydr 61.6 92 0.002 33.1 11.6 60 76-135 223-288 (301)
172 cd03819 GT1_WavL_like This fam 61.4 1E+02 0.0023 31.8 11.8 109 14-132 216-329 (355)
173 PRK11889 flhF flagellar biosyn 61.2 84 0.0018 35.9 11.5 56 13-68 268-328 (436)
174 PRK14075 pnk inorganic polypho 60.7 71 0.0015 33.7 10.4 93 15-134 1-95 (256)
175 cd04722 TIM_phosphate_binding 60.3 54 0.0012 30.8 8.7 56 60-115 136-198 (200)
176 cd03820 GT1_amsD_like This fam 59.3 1.6E+02 0.0034 29.4 12.3 109 14-133 209-319 (348)
177 PRK02155 ppnK NAD(+)/NADH kina 59.3 72 0.0016 34.3 10.3 100 16-134 7-120 (291)
178 TIGR01302 IMP_dehydrog inosine 59.0 72 0.0016 36.3 10.8 100 13-116 235-356 (450)
179 PRK05703 flhF flagellar biosyn 59.0 80 0.0017 35.7 11.1 91 14-105 251-350 (424)
180 PF01285 TEA: TEA/ATTS domain 58.7 4.9 0.00011 45.5 1.5 52 198-250 46-112 (431)
181 cd03114 ArgK-like The function 58.1 25 0.00053 33.7 6.0 44 47-96 80-123 (148)
182 PRK03708 ppnK inorganic polyph 57.0 69 0.0015 34.2 9.7 101 15-134 1-113 (277)
183 PRK14974 cell division protein 57.0 1.4E+02 0.0031 32.9 12.2 99 14-116 168-287 (336)
184 TIGR00693 thiE thiamine-phosph 57.0 66 0.0014 31.6 8.9 70 42-115 101-179 (196)
185 cd03313 enolase Enolase: Enola 56.9 73 0.0016 35.8 10.3 107 20-129 209-348 (408)
186 PRK07428 nicotinate-nucleotide 55.9 54 0.0012 35.4 8.7 93 17-114 169-269 (288)
187 PRK06096 molybdenum transport 55.7 52 0.0011 35.5 8.4 72 40-115 192-263 (284)
188 PRK05848 nicotinate-nucleotide 55.0 1.1E+02 0.0024 32.8 10.7 92 17-115 155-256 (273)
189 TIGR00566 trpG_papA glutamine 54.8 45 0.00097 33.2 7.4 74 17-94 2-79 (188)
190 PF01729 QRPTase_C: Quinolinat 54.8 46 0.00099 33.1 7.4 94 17-114 53-153 (169)
191 TIGR00262 trpA tryptophan synt 54.7 1.6E+02 0.0035 31.0 11.9 101 14-117 115-228 (256)
192 PRK07695 transcriptional regul 54.4 1.2E+02 0.0025 30.3 10.3 85 43-131 101-197 (201)
193 TIGR01163 rpe ribulose-phospha 54.1 79 0.0017 31.2 9.0 54 74-127 43-97 (210)
194 PF02254 TrkA_N: TrkA-N domain 53.8 1.6E+02 0.0034 26.1 10.1 93 14-115 21-115 (116)
195 PRK14098 glycogen synthase; Pr 53.4 1E+02 0.0022 35.4 10.8 112 14-132 336-450 (489)
196 PRK15427 colanic acid biosynth 52.5 1.8E+02 0.0038 32.2 12.3 107 15-132 254-369 (406)
197 PRK04302 triosephosphate isome 52.5 2.2E+02 0.0048 29.0 12.2 80 35-117 111-203 (223)
198 cd00331 IGPS Indole-3-glycerol 52.3 1.1E+02 0.0024 30.7 9.9 68 63-130 48-117 (217)
199 TIGR01306 GMP_reduct_2 guanosi 52.2 2.1E+02 0.0045 31.6 12.4 98 16-116 110-227 (321)
200 PF01959 DHQS: 3-dehydroquinat 51.9 1.1E+02 0.0024 34.1 10.3 71 61-132 97-169 (354)
201 cd03785 GT1_MurG MurG is an N- 51.6 2.1E+02 0.0046 29.9 12.2 57 75-133 262-324 (350)
202 PRK09922 UDP-D-galactose:(gluc 51.5 1.4E+02 0.0031 31.8 11.1 111 14-134 210-325 (359)
203 cd04740 DHOD_1B_like Dihydroor 51.5 1.9E+02 0.0042 30.5 11.9 59 76-134 220-284 (296)
204 TIGR00735 hisF imidazoleglycer 51.3 1.5E+02 0.0032 30.9 10.9 53 76-128 188-247 (254)
205 PRK07649 para-aminobenzoate/an 51.2 18 0.00039 36.4 3.9 48 17-66 2-49 (195)
206 PLN02935 Bifunctional NADH kin 50.9 1.1E+02 0.0025 35.6 10.6 56 60-134 262-319 (508)
207 PLN02591 tryptophan synthase 50.9 2.3E+02 0.0051 29.9 12.2 101 17-117 110-219 (250)
208 cd02809 alpha_hydroxyacid_oxid 50.5 1.5E+02 0.0032 31.7 11.0 86 28-116 162-256 (299)
209 TIGR01305 GMP_reduct_1 guanosi 50.4 1.6E+02 0.0035 32.7 11.3 100 14-116 121-241 (343)
210 cd04723 HisA_HisF Phosphoribos 50.3 79 0.0017 32.6 8.6 67 47-115 148-217 (233)
211 PRK03378 ppnK inorganic polyph 50.2 1.1E+02 0.0024 33.0 9.9 100 16-134 7-120 (292)
212 cd03801 GT1_YqgM_like This fam 50.2 2.4E+02 0.0051 28.1 11.8 75 48-133 267-341 (374)
213 PF14097 SpoVAE: Stage V sporu 50.0 1.8E+02 0.004 29.4 10.5 75 17-91 3-86 (180)
214 PRK12726 flagellar biosynthesi 49.9 1.6E+02 0.0034 33.6 11.2 56 14-69 234-294 (407)
215 PRK04338 N(2),N(2)-dimethylgua 49.4 2.7E+02 0.006 31.1 13.2 77 15-98 82-161 (382)
216 PRK07807 inosine 5-monophospha 49.4 1.4E+02 0.003 34.6 11.1 101 13-116 238-359 (479)
217 PRK05718 keto-hydroxyglutarate 49.3 1.8E+02 0.0039 30.0 10.9 94 31-127 9-105 (212)
218 PRK03562 glutathione-regulated 49.1 79 0.0017 37.5 9.4 92 14-114 423-516 (621)
219 PF02581 TMP-TENI: Thiamine mo 49.0 1.2E+02 0.0026 29.7 9.4 69 42-114 100-175 (180)
220 cd03818 GT1_ExpC_like This fam 48.7 1.9E+02 0.0042 31.3 11.7 66 61-133 301-366 (396)
221 PRK00748 1-(5-phosphoribosyl)- 48.4 84 0.0018 31.7 8.3 67 47-115 148-219 (233)
222 PRK03372 ppnK inorganic polyph 48.3 1.7E+02 0.0036 31.9 11.0 100 16-134 7-129 (306)
223 PRK06731 flhF flagellar biosyn 47.5 1.6E+02 0.0035 31.4 10.6 55 14-69 103-163 (270)
224 PRK03659 glutathione-regulated 47.3 89 0.0019 36.9 9.4 53 60-115 464-517 (601)
225 COG0157 NadC Nicotinate-nucleo 47.3 1.4E+02 0.003 32.4 9.9 90 17-113 161-259 (280)
226 cd05212 NAD_bind_m-THF_DH_Cycl 47.3 57 0.0012 31.5 6.5 54 12-72 26-83 (140)
227 PRK06895 putative anthranilate 47.1 26 0.00057 34.7 4.3 32 14-45 1-32 (190)
228 TIGR00064 ftsY signal recognit 47.0 1.9E+02 0.0041 30.7 11.0 54 14-69 100-163 (272)
229 PF04131 NanE: Putative N-acet 46.7 1.7E+02 0.0037 30.0 10.0 99 14-116 64-173 (192)
230 TIGR02082 metH 5-methyltetrahy 46.6 1.4E+02 0.0031 38.3 11.5 108 15-124 733-853 (1178)
231 PRK13587 1-(5-phosphoribosyl)- 46.5 1.1E+02 0.0023 31.9 8.8 68 48-116 151-221 (234)
232 PF01081 Aldolase: KDPG and KH 46.5 57 0.0012 33.3 6.7 62 65-127 36-98 (196)
233 TIGR00308 TRM1 tRNA(guanine-26 46.4 3.4E+02 0.0074 30.4 13.3 112 15-132 70-189 (374)
234 PRK04885 ppnK inorganic polyph 46.1 1.1E+02 0.0024 32.5 9.1 56 60-134 35-94 (265)
235 PRK13566 anthranilate synthase 45.9 48 0.001 40.2 7.0 78 13-94 525-605 (720)
236 COG0742 N6-adenine-specific me 45.9 39 0.00084 34.4 5.3 53 15-68 67-122 (187)
237 TIGR03449 mycothiol_MshA UDP-N 45.5 2.8E+02 0.0062 29.8 12.3 108 15-133 253-368 (405)
238 cd04733 OYE_like_2_FMN Old yel 45.3 2E+02 0.0044 31.2 11.2 40 76-115 281-320 (338)
239 TIGR01361 DAHP_synth_Bsub phos 45.1 1.6E+02 0.0034 31.2 10.0 83 47-130 148-257 (260)
240 cd05844 GT1_like_7 Glycosyltra 44.9 3.7E+02 0.008 28.0 12.8 109 14-133 219-336 (367)
241 PRK06774 para-aminobenzoate sy 44.9 27 0.00059 34.6 4.1 74 17-94 2-79 (191)
242 PF00290 Trp_syntA: Tryptophan 44.9 27 0.00058 37.2 4.2 54 75-128 74-134 (259)
243 PRK07028 bifunctional hexulose 44.8 3.4E+02 0.0073 30.6 13.1 102 30-134 99-213 (430)
244 TIGR00095 RNA methyltransferas 44.7 2.3E+02 0.005 28.3 10.7 68 16-83 74-144 (189)
245 cd03802 GT1_AviGT4_like This f 44.5 2.3E+02 0.005 29.0 11.0 73 47-131 234-306 (335)
246 PRK07107 inosine 5-monophospha 44.4 91 0.002 36.2 8.7 101 13-116 253-381 (502)
247 COG0159 TrpA Tryptophan syntha 44.3 68 0.0015 34.4 7.1 54 76-129 82-142 (265)
248 PRK02083 imidazole glycerol ph 44.2 2.2E+02 0.0049 29.4 10.9 79 48-128 156-245 (253)
249 PRK00726 murG undecaprenyldiph 44.2 3.7E+02 0.008 28.5 12.8 56 76-133 263-324 (357)
250 PLN02781 Probable caffeoyl-CoA 44.1 1.2E+02 0.0025 31.4 8.7 58 12-69 91-153 (234)
251 cd01573 modD_like ModD; Quinol 44.0 1.3E+02 0.0029 32.0 9.3 93 17-115 155-257 (272)
252 cd03804 GT1_wbaZ_like This fam 43.8 1.6E+02 0.0035 30.8 10.0 104 15-134 222-327 (351)
253 PF00478 IMPDH: IMP dehydrogen 43.7 2.6E+02 0.0057 31.2 11.7 102 13-117 119-241 (352)
254 cd04732 HisA HisA. Phosphorib 43.5 2.9E+02 0.0062 27.8 11.3 68 46-115 147-218 (234)
255 PRK15320 transcriptional activ 43.4 73 0.0016 33.2 6.8 106 16-128 3-110 (251)
256 PF03328 HpcH_HpaI: HpcH/HpaI 43.2 2E+02 0.0044 29.0 10.2 83 46-130 9-106 (221)
257 KOG1601 GATA-4/5/6 transcripti 43.2 3 6.5E-05 41.7 -3.0 122 9-133 11-139 (340)
258 cd08179 NADPH_BDH NADPH-depend 43.1 1.8E+02 0.0039 32.0 10.5 63 15-82 24-100 (375)
259 TIGR01305 GMP_reduct_1 guanosi 43.0 1E+02 0.0022 34.3 8.3 57 60-116 121-178 (343)
260 PRK05581 ribulose-phosphate 3- 43.0 1.4E+02 0.0031 29.7 8.9 66 48-116 122-198 (220)
261 KOG4175 Tryptophan synthase al 43.0 40 0.00086 35.0 4.9 39 87-125 95-139 (268)
262 PRK06543 nicotinate-nucleotide 42.7 3.5E+02 0.0075 29.3 12.2 91 16-113 161-262 (281)
263 PRK13125 trpA tryptophan synth 42.5 2.6E+02 0.0057 28.9 11.1 88 27-117 118-215 (244)
264 cd04731 HisF The cyclase subun 42.2 1.3E+02 0.0027 30.9 8.6 71 44-116 26-100 (243)
265 TIGR01163 rpe ribulose-phospha 42.2 89 0.0019 30.8 7.3 81 32-116 98-193 (210)
266 cd08187 BDH Butanol dehydrogen 42.2 1.7E+02 0.0037 32.3 10.1 64 14-82 28-105 (382)
267 PRK09490 metH B12-dependent me 42.2 1.5E+02 0.0032 38.3 10.7 106 15-122 752-870 (1229)
268 TIGR00736 nifR3_rel_arch TIM-b 41.8 2.7E+02 0.0058 29.2 10.9 94 19-115 116-219 (231)
269 cd00429 RPE Ribulose-5-phospha 41.7 86 0.0019 30.8 7.1 55 61-116 128-194 (211)
270 PLN02589 caffeoyl-CoA O-methyl 41.6 1.3E+02 0.0028 31.8 8.6 58 12-69 102-165 (247)
271 PRK02649 ppnK inorganic polyph 41.6 1.7E+02 0.0037 31.8 9.8 100 16-134 3-125 (305)
272 PRK13125 trpA tryptophan synth 41.6 94 0.002 32.3 7.6 55 77-131 64-126 (244)
273 PRK09016 quinolinate phosphori 41.2 1.5E+02 0.0032 32.4 9.1 91 17-114 182-278 (296)
274 cd03799 GT1_amsK_like This is 41.1 2.9E+02 0.0062 28.4 11.1 76 48-133 247-327 (355)
275 PRK13609 diacylglycerol glucos 41.1 3.5E+02 0.0075 29.1 12.1 104 15-132 231-337 (380)
276 cd03806 GT1_ALG11_like This fa 40.8 3E+02 0.0065 30.6 11.9 108 14-133 273-392 (419)
277 TIGR02149 glgA_Coryne glycogen 40.7 3.4E+02 0.0074 28.7 11.9 107 15-132 230-351 (388)
278 TIGR01425 SRP54_euk signal rec 40.7 3.4E+02 0.0075 31.1 12.3 54 14-69 128-191 (429)
279 cd06533 Glyco_transf_WecG_TagA 40.7 1.5E+02 0.0032 29.2 8.5 76 14-93 46-130 (171)
280 PLN02819 lysine-ketoglutarate 40.5 2.6E+02 0.0056 35.6 12.2 112 14-131 569-693 (1042)
281 KOG3040 Predicted sugar phosph 40.4 69 0.0015 33.6 6.2 95 15-134 40-138 (262)
282 PRK04180 pyridoxal biosynthesi 40.3 75 0.0016 34.6 6.7 61 74-134 190-257 (293)
283 PRK04128 1-(5-phosphoribosyl)- 40.3 2.5E+02 0.0054 29.1 10.4 80 45-126 30-114 (228)
284 cd00452 KDPG_aldolase KDPG and 40.1 1.9E+02 0.0042 28.6 9.3 70 42-117 102-172 (190)
285 COG0673 MviM Predicted dehydro 39.9 3.2E+02 0.0069 28.8 11.4 108 14-133 3-117 (342)
286 TIGR01182 eda Entner-Doudoroff 39.8 2.2E+02 0.0047 29.3 9.7 80 41-123 13-94 (204)
287 cd04949 GT1_gtfA_like This fam 39.8 2.6E+02 0.0056 29.5 10.8 56 73-133 290-345 (372)
288 PRK09288 purT phosphoribosylgl 39.7 3.7E+02 0.008 29.3 12.2 30 12-42 10-39 (395)
289 PF04321 RmlD_sub_bind: RmlD s 39.1 61 0.0013 34.2 5.9 80 15-96 1-102 (286)
290 PRK14076 pnk inorganic polypho 39.1 1.2E+02 0.0026 35.7 8.7 101 15-134 291-405 (569)
291 PRK01231 ppnK inorganic polyph 39.0 2.9E+02 0.0063 29.8 11.0 100 16-134 6-119 (295)
292 cd02801 DUS_like_FMN Dihydrour 39.0 3.1E+02 0.0068 27.4 10.7 90 22-113 107-210 (231)
293 PRK10416 signal recognition pa 38.6 2.7E+02 0.0058 30.4 10.8 56 12-69 140-205 (318)
294 PF02887 PK_C: Pyruvate kinase 38.6 81 0.0017 28.8 5.9 66 60-130 16-83 (117)
295 TIGR01133 murG undecaprenyldip 38.3 4.8E+02 0.011 27.2 12.8 56 76-133 261-321 (348)
296 PRK01185 ppnK inorganic polyph 38.0 2.6E+02 0.0057 29.9 10.4 100 15-134 1-106 (271)
297 PRK00811 spermidine synthase; 37.8 1.7E+02 0.0037 31.1 9.0 57 13-72 99-162 (283)
298 cd03808 GT1_cap1E_like This fa 37.7 3.1E+02 0.0067 27.4 10.5 53 75-133 277-329 (359)
299 PF13941 MutL: MutL protein 37.6 5.5E+02 0.012 29.7 13.4 120 13-134 75-210 (457)
300 COG4122 Predicted O-methyltran 37.5 1.2E+02 0.0025 31.7 7.4 58 12-71 82-143 (219)
301 PHA02518 ParA-like protein; Pr 37.3 74 0.0016 31.0 5.8 93 14-108 29-122 (211)
302 PF03808 Glyco_tran_WecB: Glyc 36.9 2.2E+02 0.0048 27.9 9.0 76 14-93 48-132 (172)
303 PRK07765 para-aminobenzoate sy 36.6 50 0.0011 33.7 4.6 79 15-94 1-83 (214)
304 PLN02823 spermine synthase 36.5 78 0.0017 34.8 6.3 55 14-71 127-187 (336)
305 PRK04148 hypothetical protein; 36.4 1.2E+02 0.0027 29.2 6.9 59 14-76 17-75 (134)
306 cd08185 Fe-ADH1 Iron-containin 36.1 1.8E+02 0.0039 32.1 9.1 63 15-82 26-102 (380)
307 TIGR03061 pip_yhgE_Nterm YhgE/ 36.0 84 0.0018 30.3 5.9 52 12-66 41-102 (164)
308 PRK06015 keto-hydroxyglutarate 35.9 2.3E+02 0.005 29.1 9.2 59 67-125 34-92 (201)
309 PRK13143 hisH imidazole glycer 35.9 86 0.0019 31.4 6.1 44 15-66 1-44 (200)
310 PRK08007 para-aminobenzoate sy 35.7 43 0.00094 33.3 3.9 89 17-113 2-94 (187)
311 PRK11359 cyclic-di-GMP phospho 35.7 3E+02 0.0065 32.6 11.5 98 29-129 682-793 (799)
312 KOG3111 D-ribulose-5-phosphate 35.6 4.1E+02 0.0088 27.7 10.6 103 28-133 102-219 (224)
313 cd03811 GT1_WabH_like This fam 35.4 3.8E+02 0.0083 26.6 10.7 52 75-132 277-328 (353)
314 PLN02476 O-methyltransferase 35.3 1.6E+02 0.0034 31.7 8.2 58 12-69 141-203 (278)
315 COG0626 MetC Cystathionine bet 35.3 3.2E+02 0.0068 31.0 10.9 98 14-114 102-205 (396)
316 PF01564 Spermine_synth: Sperm 35.3 98 0.0021 32.3 6.6 60 12-75 98-165 (246)
317 TIGR00735 hisF imidazoleglycer 35.3 2.3E+02 0.0051 29.4 9.4 72 44-116 29-103 (254)
318 TIGR00737 nifR3_yhdG putative 35.2 3.2E+02 0.0069 29.4 10.7 94 20-115 113-221 (319)
319 cd08181 PPD-like 1,3-propanedi 35.2 2.9E+02 0.0063 30.2 10.5 64 14-82 25-102 (357)
320 PLN02275 transferase, transfer 35.1 5.3E+02 0.012 27.9 12.5 104 14-130 261-370 (371)
321 cd08194 Fe-ADH6 Iron-containin 34.8 2.7E+02 0.0058 30.7 10.2 63 15-82 24-99 (375)
322 cd00532 MGS-like MGS-like doma 34.7 86 0.0019 28.5 5.4 24 21-44 8-31 (112)
323 PF04131 NanE: Putative N-acet 34.7 87 0.0019 32.1 5.8 68 38-112 45-115 (192)
324 CHL00200 trpA tryptophan synth 34.7 3.6E+02 0.0079 28.7 10.7 103 14-119 119-234 (263)
325 PRK15490 Vi polysaccharide bio 34.6 5.6E+02 0.012 30.6 13.0 104 14-129 429-534 (578)
326 PRK00771 signal recognition pa 34.2 3.9E+02 0.0085 30.6 11.6 55 14-69 123-184 (437)
327 cd03825 GT1_wcfI_like This fam 34.1 1.3E+02 0.0028 31.1 7.2 75 15-93 1-82 (365)
328 PF07279 DUF1442: Protein of u 33.9 2.2E+02 0.0048 29.8 8.6 71 16-92 71-146 (218)
329 TIGR00734 hisAF_rel hisA/hisF 33.7 2.2E+02 0.0048 29.3 8.7 68 46-115 142-212 (221)
330 PRK06978 nicotinate-nucleotide 33.7 3.4E+02 0.0073 29.7 10.4 91 16-113 178-274 (294)
331 cd00167 SANT 'SWI3, ADA2, N-Co 33.7 1.1E+02 0.0023 21.9 4.9 43 203-249 1-43 (45)
332 cd02810 DHOD_DHPD_FMN Dihydroo 33.5 2.5E+02 0.0054 29.4 9.3 38 76-113 230-269 (289)
333 PLN02716 nicotinate-nucleotide 33.5 2.8E+02 0.006 30.5 9.8 97 17-113 173-287 (308)
334 PRK03522 rumB 23S rRNA methylu 33.4 2E+02 0.0043 30.9 8.7 79 14-98 195-277 (315)
335 PRK14722 flhF flagellar biosyn 33.3 2.9E+02 0.0063 31.1 10.1 87 15-102 168-262 (374)
336 PF01008 IF-2B: Initiation fac 33.2 82 0.0018 33.0 5.7 79 14-96 133-219 (282)
337 TIGR03704 PrmC_rel_meth putati 33.1 4.2E+02 0.0091 27.6 10.8 52 14-68 110-161 (251)
338 cd04951 GT1_WbdM_like This fam 33.1 3.2E+02 0.0069 28.1 10.0 105 14-132 219-325 (360)
339 TIGR01302 IMP_dehydrog inosine 33.0 1.5E+02 0.0032 33.8 8.0 63 48-114 227-291 (450)
340 cd02911 arch_FMN Archeal FMN-b 33.0 5.8E+02 0.012 26.5 11.9 91 20-115 122-219 (233)
341 PRK05286 dihydroorotate dehydr 32.7 3.5E+02 0.0076 29.7 10.6 56 78-133 278-342 (344)
342 TIGR01306 GMP_reduct_2 guanosi 32.6 1.2E+02 0.0025 33.4 6.8 56 61-116 109-165 (321)
343 TIGR02990 ectoine_eutA ectoine 32.6 3.1E+02 0.0067 28.8 9.7 75 15-91 121-210 (239)
344 cd08176 LPO Lactadehyde:propan 32.5 2.9E+02 0.0062 30.5 10.0 63 15-82 29-104 (377)
345 PRK12723 flagellar biosynthesi 32.5 4.4E+02 0.0096 29.7 11.5 91 14-106 206-306 (388)
346 PRK12727 flagellar biosynthesi 32.5 3.3E+02 0.0071 32.4 10.7 55 14-69 380-437 (559)
347 PRK13523 NADPH dehydrogenase N 32.4 2.7E+02 0.0059 30.6 9.7 55 60-114 240-302 (337)
348 cd02930 DCR_FMN 2,4-dienoyl-Co 32.4 2.6E+02 0.0057 30.6 9.6 39 76-114 265-303 (353)
349 PF04309 G3P_antiterm: Glycero 32.3 57 0.0012 32.8 4.1 61 47-113 106-166 (175)
350 TIGR03128 RuMP_HxlA 3-hexulose 32.3 5.1E+02 0.011 25.6 13.8 85 28-115 92-185 (206)
351 TIGR01579 MiaB-like-C MiaB-lik 32.1 3E+02 0.0065 30.7 10.1 92 25-130 11-107 (414)
352 TIGR00696 wecB_tagA_cpsF bacte 32.1 2.5E+02 0.0055 28.0 8.6 76 13-92 47-130 (177)
353 COG3010 NanE Putative N-acetyl 31.8 6.3E+02 0.014 26.6 11.4 112 14-129 98-224 (229)
354 PRK06512 thiamine-phosphate py 31.8 3.6E+02 0.0078 27.8 9.9 85 44-132 118-213 (221)
355 PRK02290 3-dehydroquinate synt 31.7 2.1E+02 0.0045 32.0 8.5 71 60-132 88-160 (344)
356 PRK06106 nicotinate-nucleotide 31.7 2.8E+02 0.006 30.0 9.3 91 17-114 167-264 (281)
357 PRK14723 flhF flagellar biosyn 31.7 3.1E+02 0.0068 33.8 10.7 114 15-131 216-347 (767)
358 PRK05670 anthranilate synthase 31.6 61 0.0013 32.0 4.2 48 17-66 2-49 (189)
359 TIGR00959 ffh signal recogniti 31.6 3.9E+02 0.0085 30.5 11.0 54 14-69 128-191 (428)
360 PRK05437 isopentenyl pyrophosp 31.5 4.3E+02 0.0094 29.2 11.1 87 26-115 174-289 (352)
361 PF07652 Flavi_DEAD: Flaviviru 31.5 1.8E+02 0.004 28.6 7.3 84 13-97 32-136 (148)
362 cd02803 OYE_like_FMN_family Ol 31.4 3.2E+02 0.0069 29.1 9.9 41 74-114 268-308 (327)
363 PRK05637 anthranilate synthase 31.4 75 0.0016 32.4 4.9 76 15-94 2-80 (208)
364 PRK10742 putative methyltransf 31.4 4.5E+02 0.0098 28.1 10.7 58 14-74 110-178 (250)
365 PRK06559 nicotinate-nucleotide 31.4 3.9E+02 0.0084 29.1 10.4 91 16-113 169-266 (290)
366 cd04726 KGPDC_HPS 3-Keto-L-gul 31.4 1.4E+02 0.003 29.4 6.6 45 74-118 39-86 (202)
367 CHL00101 trpG anthranilate syn 31.4 56 0.0012 32.5 3.9 49 16-66 1-49 (190)
368 PRK05458 guanosine 5'-monophos 31.3 1.5E+02 0.0033 32.6 7.5 65 48-114 100-166 (326)
369 PRK09860 putative alcohol dehy 31.2 2.9E+02 0.0062 30.7 9.8 63 15-82 32-107 (383)
370 PF00497 SBP_bac_3: Bacterial 31.2 1.8E+02 0.0038 27.7 7.2 52 13-68 109-160 (225)
371 PRK14329 (dimethylallyl)adenos 31.1 2.8E+02 0.006 31.8 9.8 104 15-132 24-140 (467)
372 PLN02898 HMP-P kinase/thiamin- 31.0 2.3E+02 0.005 32.5 9.2 85 43-131 396-495 (502)
373 PRK02645 ppnK inorganic polyph 30.9 2.7E+02 0.0058 30.2 9.2 101 16-134 5-116 (305)
374 PRK08649 inosine 5-monophospha 30.9 6.7E+02 0.014 28.1 12.5 66 46-115 142-214 (368)
375 cd04731 HisF The cyclase subun 30.9 2.5E+02 0.0055 28.7 8.7 56 60-115 162-222 (243)
376 cd03812 GT1_CapH_like This fam 30.8 4.5E+02 0.0098 27.1 10.7 108 14-134 223-332 (358)
377 cd02940 DHPD_FMN Dihydropyrimi 30.8 2.4E+02 0.0052 30.1 8.8 39 76-114 239-279 (299)
378 TIGR00417 speE spermidine synt 30.7 3.2E+02 0.007 28.6 9.6 56 14-72 96-157 (270)
379 PRK13585 1-(5-phosphoribosyl)- 30.7 4.2E+02 0.0091 26.9 10.2 79 46-126 150-238 (241)
380 KOG1562 Spermidine synthase [A 30.7 1.4E+02 0.0031 32.8 6.9 63 16-80 147-215 (337)
381 PRK10415 tRNA-dihydrouridine s 30.6 3.6E+02 0.0078 29.3 10.2 95 19-115 114-223 (321)
382 PRK07455 keto-hydroxyglutarate 30.6 3.9E+02 0.0084 26.8 9.7 91 33-124 8-99 (187)
383 smart00717 SANT SANT SWI3, AD 30.5 1.2E+02 0.0027 21.9 4.8 41 202-246 2-42 (49)
384 PRK13398 3-deoxy-7-phosphohept 30.4 2.4E+02 0.0052 30.1 8.6 97 34-131 130-260 (266)
385 cd08170 GlyDH Glycerol dehydro 30.4 2.5E+02 0.0054 30.5 9.0 76 14-94 22-108 (351)
386 cd03807 GT1_WbnK_like This fam 30.2 5.6E+02 0.012 25.7 11.0 64 61-133 269-332 (365)
387 PF00448 SRP54: SRP54-type pro 30.2 2.9E+02 0.0063 27.8 8.8 86 14-103 29-131 (196)
388 cd03316 MR_like Mandelate race 30.2 2.5E+02 0.0053 30.4 8.9 41 79-119 232-273 (357)
389 TIGR00511 ribulose_e2b2 ribose 30.2 2E+02 0.0042 31.2 8.0 79 14-97 141-227 (301)
390 PLN02335 anthranilate synthase 30.1 59 0.0013 33.4 3.9 76 15-94 19-98 (222)
391 cd01948 EAL EAL domain. This d 30.1 1.8E+02 0.0038 28.7 7.2 88 30-120 137-238 (240)
392 PRK00025 lpxB lipid-A-disaccha 30.0 5.5E+02 0.012 27.4 11.5 24 110-133 318-341 (380)
393 COG0352 ThiE Thiamine monophos 29.9 5.6E+02 0.012 26.5 10.9 68 43-114 110-184 (211)
394 PRK08649 inosine 5-monophospha 29.6 2.4E+02 0.0052 31.6 8.7 84 28-115 177-284 (368)
395 PRK08535 translation initiatio 29.6 2.2E+02 0.0047 30.9 8.3 80 14-98 146-233 (310)
396 PRK02615 thiamine-phosphate py 29.3 4.1E+02 0.0089 29.6 10.4 68 43-114 246-320 (347)
397 PLN00191 enolase 29.2 4.2E+02 0.0091 30.6 10.8 109 20-129 239-380 (457)
398 cd03805 GT1_ALG2_like This fam 29.2 5.2E+02 0.011 27.4 11.0 108 14-133 245-364 (392)
399 PRK13849 putative crown gall t 29.1 1.4E+02 0.003 30.9 6.4 12 14-25 30-41 (231)
400 TIGR03499 FlhF flagellar biosy 29.0 1.6E+02 0.0034 31.3 7.0 53 15-68 225-280 (282)
401 cd08551 Fe-ADH iron-containing 28.9 3.1E+02 0.0066 30.0 9.4 63 15-82 24-99 (370)
402 COG4262 Predicted spermidine s 28.8 1.1E+02 0.0023 34.8 5.7 64 10-75 309-380 (508)
403 PRK00536 speE spermidine synth 28.8 1.5E+02 0.0033 31.6 6.7 21 203-233 236-256 (262)
404 PRK08072 nicotinate-nucleotide 28.7 3.6E+02 0.0078 29.0 9.6 92 16-115 160-259 (277)
405 PRK05567 inosine 5'-monophosph 28.7 2.2E+02 0.0048 32.7 8.6 64 48-114 230-295 (486)
406 TIGR01304 IMP_DH_rel_2 IMP deh 28.6 2.9E+02 0.0064 30.9 9.2 100 13-115 154-283 (369)
407 COG1748 LYS9 Saccharopine dehy 28.6 4.2E+02 0.0091 30.0 10.4 20 207-226 242-261 (389)
408 PRK14949 DNA polymerase III su 28.6 1.5E+02 0.0032 37.2 7.3 73 60-134 119-194 (944)
409 COG0421 SpeE Spermidine syntha 28.5 1.6E+02 0.0035 31.7 6.9 56 15-72 101-161 (282)
410 TIGR02085 meth_trns_rumB 23S r 28.5 4E+02 0.0087 29.5 10.2 88 14-108 255-346 (374)
411 cd08171 GlyDH-like2 Glycerol d 28.4 2E+02 0.0043 31.3 7.8 76 14-94 22-109 (345)
412 TIGR00479 rumA 23S rRNA (uraci 28.4 5.8E+02 0.013 28.5 11.6 79 15-95 315-396 (431)
413 COG2200 Rtn c-di-GMP phosphodi 28.4 5.2E+02 0.011 27.0 10.6 99 27-128 138-250 (256)
414 PRK04539 ppnK inorganic polyph 28.3 5.3E+02 0.011 27.9 10.9 100 16-134 7-125 (296)
415 PLN02274 inosine-5'-monophosph 28.3 1.9E+02 0.0041 33.7 7.9 67 46-115 248-316 (505)
416 PRK13397 3-deoxy-7-phosphohept 28.1 4.6E+02 0.01 27.9 10.1 71 47-119 138-223 (250)
417 PRK09283 delta-aminolevulinic 28.0 98 0.0021 34.1 5.2 64 46-112 226-290 (323)
418 cd02932 OYE_YqiM_FMN Old yello 28.0 3.5E+02 0.0075 29.4 9.5 39 76-114 279-317 (336)
419 PRK04457 spermidine synthase; 27.9 6.1E+02 0.013 26.6 11.1 53 14-69 90-145 (262)
420 PRK05031 tRNA (uracil-5-)-meth 27.9 6E+02 0.013 28.0 11.5 77 16-97 230-322 (362)
421 TIGR02855 spore_yabG sporulati 27.8 4.4E+02 0.0094 28.7 9.8 55 11-67 101-160 (283)
422 smart00052 EAL Putative diguan 27.8 2.6E+02 0.0056 27.5 7.9 89 29-120 137-239 (241)
423 cd06354 PBP1_BmpA_PnrA_like Pe 27.8 3.1E+02 0.0068 27.8 8.8 65 26-95 20-89 (265)
424 PRK01581 speE spermidine synth 27.7 3.3E+02 0.0072 30.7 9.3 57 12-71 172-237 (374)
425 cd06304 PBP1_BmpA_like Peripla 27.6 3.4E+02 0.0073 27.3 8.9 65 27-96 20-89 (260)
426 TIGR03572 WbuZ glycosyl amidat 27.5 3.2E+02 0.0069 27.7 8.7 71 44-116 29-103 (232)
427 TIGR02095 glgA glycogen/starch 27.5 4.7E+02 0.01 29.3 10.8 108 15-133 321-437 (473)
428 cd04739 DHOD_like Dihydroorota 27.3 8.3E+02 0.018 26.5 12.9 59 77-135 227-292 (325)
429 cd03798 GT1_wlbH_like This fam 27.2 4.7E+02 0.01 26.2 9.8 54 75-134 292-345 (377)
430 TIGR01859 fruc_bis_ald_ fructo 27.2 2.2E+02 0.0047 30.6 7.7 82 44-132 152-242 (282)
431 PRK06552 keto-hydroxyglutarate 27.1 5.4E+02 0.012 26.5 10.2 93 32-125 8-104 (213)
432 cd08186 Fe-ADH8 Iron-containin 27.1 3.2E+02 0.007 30.2 9.2 63 15-82 27-103 (383)
433 cd01572 QPRTase Quinolinate ph 27.0 4.4E+02 0.0095 28.1 9.8 90 17-115 155-253 (268)
434 PRK13789 phosphoribosylamine-- 27.0 5.5E+02 0.012 29.0 11.2 117 14-133 4-178 (426)
435 cd08174 G1PDH-like Glycerol-1- 27.0 3.7E+02 0.008 29.0 9.5 76 14-94 25-106 (331)
436 PRK08883 ribulose-phosphate 3- 26.9 2.1E+02 0.0046 29.5 7.3 81 32-116 100-195 (220)
437 PRK00941 acetyl-CoA decarbonyl 26.8 6.3E+02 0.014 31.3 12.0 117 12-134 235-384 (781)
438 PRK07565 dihydroorotate dehydr 26.6 6.6E+02 0.014 27.3 11.4 58 77-134 229-293 (334)
439 PRK06806 fructose-bisphosphate 26.6 2.8E+02 0.006 29.8 8.3 71 43-115 151-229 (281)
440 TIGR01303 IMP_DH_rel_1 IMP deh 26.5 6.1E+02 0.013 29.4 11.5 100 13-116 236-357 (475)
441 PRK00748 1-(5-phosphoribosyl)- 26.5 3.8E+02 0.0083 27.0 9.0 72 44-117 29-104 (233)
442 PRK01033 imidazole glycerol ph 26.4 3.4E+02 0.0074 28.4 8.9 72 44-116 29-103 (258)
443 PRK11829 biofilm formation reg 26.4 4.8E+02 0.01 30.5 11.0 98 28-127 542-652 (660)
444 cd04724 Tryptophan_synthase_al 26.4 3.9E+02 0.0085 27.7 9.2 97 17-117 108-216 (242)
445 cd03795 GT1_like_4 This family 26.3 7.2E+02 0.016 25.4 13.5 109 14-133 218-332 (357)
446 cd04737 LOX_like_FMN L-Lactate 26.1 5.9E+02 0.013 28.4 10.9 86 28-116 211-305 (351)
447 PF05582 Peptidase_U57: YabG p 26.0 4.5E+02 0.0097 28.7 9.6 57 9-67 100-161 (287)
448 PRK02231 ppnK inorganic polyph 26.0 4.5E+02 0.0097 28.2 9.7 86 28-132 3-97 (272)
449 PRK06372 translation initiatio 25.9 3.2E+02 0.0069 29.2 8.4 77 15-96 110-194 (253)
450 PF11072 DUF2859: Protein of u 25.9 4.4E+02 0.0096 25.9 8.7 73 12-93 60-137 (142)
451 PRK08185 hypothetical protein; 25.8 2.7E+02 0.0058 30.1 8.0 82 44-132 148-240 (283)
452 PRK01362 putative translaldola 25.8 4.3E+02 0.0094 27.3 9.3 81 34-117 97-186 (214)
453 cd01568 QPRTase_NadC Quinolina 25.8 1.9E+02 0.004 30.8 6.8 95 16-115 160-254 (269)
454 TIGR00078 nadC nicotinate-nucl 25.6 4.5E+02 0.0098 28.0 9.6 90 17-113 151-247 (265)
455 PRK15128 23S rRNA m(5)C1962 me 25.6 2.2E+02 0.0047 32.1 7.6 54 15-68 244-301 (396)
456 PRK08318 dihydropyrimidine deh 25.5 5.8E+02 0.013 28.6 11.0 60 76-135 239-308 (420)
457 cd06325 PBP1_ABC_uncharacteriz 25.4 5.3E+02 0.011 25.8 9.8 83 11-93 128-217 (281)
458 cd02811 IDI-2_FMN Isopentenyl- 25.3 6.3E+02 0.014 27.5 10.9 86 26-114 166-282 (326)
459 PRK05096 guanosine 5'-monophos 25.3 4.6E+02 0.0099 29.4 9.7 33 84-116 210-242 (346)
460 PF06283 ThuA: Trehalose utili 25.2 1.6E+02 0.0034 29.6 5.9 74 16-94 1-88 (217)
461 PRK11572 copper homeostasis pr 25.2 3.9E+02 0.0085 28.5 8.9 91 22-114 98-196 (248)
462 PRK09140 2-dehydro-3-deoxy-6-p 25.2 6.5E+02 0.014 25.7 10.4 92 33-126 6-99 (206)
463 PF01993 MTD: methylene-5,6,7, 25.1 1.6E+02 0.0035 31.5 5.9 64 53-119 54-117 (276)
464 PRK10060 RNase II stability mo 25.0 5.9E+02 0.013 30.2 11.5 99 28-129 544-656 (663)
465 cd08182 HEPD Hydroxyethylphosp 25.0 3.5E+02 0.0077 29.6 9.0 63 15-82 24-96 (367)
466 PRK14077 pnk inorganic polypho 25.0 5.6E+02 0.012 27.6 10.3 101 15-134 11-121 (287)
467 PRK13170 hisH imidazole glycer 25.0 1.8E+02 0.0039 29.2 6.2 44 15-66 1-44 (196)
468 PRK00994 F420-dependent methyl 24.9 5.3E+02 0.012 27.7 9.6 81 36-119 29-118 (277)
469 TIGR00138 gidB 16S rRNA methyl 24.8 6.8E+02 0.015 24.7 10.4 50 14-68 66-117 (181)
470 PRK13384 delta-aminolevulinic 24.8 1.2E+02 0.0026 33.4 5.1 64 46-112 227-291 (322)
471 PF00532 Peripla_BP_1: Peripla 24.6 3.1E+02 0.0066 28.7 8.1 94 26-134 19-117 (279)
472 TIGR02472 sucr_P_syn_N sucrose 24.5 6.3E+02 0.014 28.1 11.0 65 62-133 342-406 (439)
473 cd06284 PBP1_LacI_like_6 Ligan 24.4 4.1E+02 0.0088 26.2 8.7 62 26-94 17-84 (267)
474 PRK00955 hypothetical protein; 24.4 4.4E+02 0.0095 31.7 10.1 110 22-132 27-179 (620)
475 cd06296 PBP1_CatR_like Ligand- 24.4 4.8E+02 0.01 25.9 9.3 65 25-95 16-86 (270)
476 PRK15454 ethanol dehydrogenase 24.4 3.2E+02 0.0069 30.6 8.6 63 15-82 50-125 (395)
477 PRK01033 imidazole glycerol ph 24.4 4.1E+02 0.0089 27.8 9.0 68 47-115 154-225 (258)
478 cd02042 ParA ParA and ParB of 24.4 1.1E+02 0.0025 26.5 4.2 8 61-68 40-47 (104)
479 COG2265 TrmA SAM-dependent met 24.4 4.7E+02 0.01 29.9 10.0 81 14-98 315-399 (432)
480 cd03816 GT1_ALG1_like This fam 24.3 6.7E+02 0.015 27.7 11.1 105 14-133 269-381 (415)
481 COG2070 Dioxygenases related t 24.3 3.7E+02 0.0081 29.6 8.9 69 42-113 132-210 (336)
482 PRK09496 trkA potassium transp 24.3 4.9E+02 0.011 28.8 10.1 94 14-114 23-122 (453)
483 cd03115 SRP The signal recogni 24.2 2.6E+02 0.0056 26.7 7.0 53 14-68 28-90 (173)
484 cd00405 PRAI Phosphoribosylant 24.2 4E+02 0.0087 26.5 8.6 51 60-113 120-178 (203)
485 PRK04169 geranylgeranylglycery 24.1 3.7E+02 0.0081 28.2 8.5 70 60-129 154-226 (232)
486 PRK02083 imidazole glycerol ph 23.9 5.1E+02 0.011 26.8 9.5 74 43-117 28-104 (253)
487 TIGR00524 eIF-2B_rel eIF-2B al 23.9 1.8E+02 0.004 31.5 6.4 82 14-98 152-242 (303)
488 TIGR03569 NeuB_NnaB N-acetylne 23.8 5E+02 0.011 28.6 9.8 92 30-122 125-228 (329)
489 PLN02316 synthase/transferase 23.8 6.1E+02 0.013 32.4 11.5 70 61-133 920-998 (1036)
490 PRK10624 L-1,2-propanediol oxi 23.7 3.6E+02 0.0077 29.9 8.8 63 15-82 31-106 (382)
491 PF00977 His_biosynth: Histidi 23.6 2.9E+02 0.0062 28.4 7.6 70 45-115 147-219 (229)
492 PRK13111 trpA tryptophan synth 23.6 9E+02 0.019 25.6 12.0 99 17-118 121-230 (258)
493 TIGR03365 Bsubt_queE 7-cyano-7 23.6 6E+02 0.013 26.3 9.9 100 16-120 75-187 (238)
494 cd03332 LMO_FMN L-Lactate 2-mo 23.5 4E+02 0.0086 30.1 9.1 85 28-115 243-336 (383)
495 PRK06512 thiamine-phosphate py 23.4 8.3E+02 0.018 25.2 11.9 30 89-118 111-140 (221)
496 TIGR03572 WbuZ glycosyl amidat 23.2 4.6E+02 0.0099 26.6 8.9 66 48-115 156-226 (232)
497 PRK07114 keto-hydroxyglutarate 23.1 8E+02 0.017 25.6 10.6 93 32-126 10-108 (222)
498 cd02922 FCB2_FMN Flavocytochro 23.0 4.1E+02 0.009 29.4 9.0 39 76-115 202-240 (344)
499 TIGR01823 PabB-fungal aminodeo 22.9 2.5E+02 0.0054 34.3 7.9 81 10-94 1-93 (742)
500 cd06338 PBP1_ABC_ligand_bindin 22.9 8.8E+02 0.019 25.3 12.3 65 27-95 158-230 (345)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.84 E-value=2.8e-20 Score=189.10 Aligned_cols=118 Identities=34% Similarity=0.524 Sum_probs=111.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~dIPVII 92 (663)
++|||||||+..+..|...|+..||.|..+.++.+|++.+.. . ||+||+|+.||++||+++|+++|. ...+||||
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~--~-~dlviLD~~lP~~dG~~~~~~iR~~~~~~~PIi~ 77 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAARE--Q-PDLVLLDLMLPDLDGLELCRRLRAKKGSGPPIIV 77 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhc--C-CCEEEEECCCCCCCHHHHHHHHHhhcCCCCcEEE
Confidence 589999999999999999999999999999999999999974 3 999999999999999999999984 46789999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+|+.++......++++||+|||+|||++.||..+++.++|+..
T Consensus 78 Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~~ 120 (229)
T COG0745 78 LTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRNA 120 (229)
T ss_pred EECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcCc
Confidence 9999999999999999999999999999999999999998864
No 2
>PLN03162 golden-2 like transcription factor; Provisional
Probab=99.84 E-value=2.3e-21 Score=203.30 Aligned_cols=69 Identities=51% Similarity=0.824 Sum_probs=64.2
Q ss_pred cCCCCCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhhhhhhhhhhhh
Q 006057 195 TTQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRISCVANQ 263 (663)
Q Consensus 195 ~~~kk~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~rl~~~~~~ 263 (663)
...||+|++||+|||++||+||++||++||+||+||++|+|++|||+||||||||||+|++|+......
T Consensus 231 ~g~KKpRLrWTpELH~rFVeAV~qLG~dKATPK~ILelMnV~GLTRenVKSHLQKYRl~rk~l~~rEaE 299 (526)
T PLN03162 231 PGKKKAKVDWTPELHRRFVHAVEQLGVEKAFPSRILELMGVQCLTRHNIASHLQKYRSHRRHLAAREAE 299 (526)
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHhCcCccchHHHHHHcCCCCcCHHHHHHHHHHHHHhcccccchhhh
Confidence 457899999999999999999999999999999999999999999999999999999999998755433
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.78 E-value=9.5e-19 Score=192.83 Aligned_cols=119 Identities=34% Similarity=0.532 Sum_probs=109.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRR--CQYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~--~gy~V-~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPV 90 (663)
++||||||++.+|++|+.++.+ +|++| .+|.+|.+|++++++. .|||||+|+.||+|||+++++.+++ .+++.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli~e~--~pDiviTDI~MP~mdGLdLI~~ike~~p~~~~ 79 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELIQET--QPDIVITDINMPGMDGLDLIKAIKEQSPDTEF 79 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCceE
Confidence 5899999999999999999975 47765 4999999999999976 7999999999999999999998874 589999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
||+|++.+.+++.+|+.+|+.|||+||++.++|..++.+++.+..
T Consensus 80 IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~ 124 (475)
T COG4753 80 IILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLE 124 (475)
T ss_pred EEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999987643
No 4
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.77 E-value=1e-17 Score=167.36 Aligned_cols=121 Identities=25% Similarity=0.434 Sum_probs=110.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRC-QYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~-gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
++|||||||+.+.++-+.+++.. ||. |.++.+.++|..++++. .|||||+|+.||+.+|++|+..++. ...+-||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i~~~--~pDLILLDiYmPd~~Gi~lL~~ir~~~~~~DVI 78 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMIIEEF--KPDLILLDIYMPDGNGIELLPELRSQHYPVDVI 78 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHHHhh--CCCEEEEeeccCCCccHHHHHHHHhcCCCCCEE
Confidence 58999999999999999999986 676 45899999999999975 6899999999999999999998875 4578999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
++||..+.+.+.+|+..||.|||+|||..+.|..++....+++...
T Consensus 79 ~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~l 124 (224)
T COG4565 79 VITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHAL 124 (224)
T ss_pred EEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999988776543
No 5
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.76 E-value=7.5e-18 Score=185.87 Aligned_cols=120 Identities=39% Similarity=0.648 Sum_probs=113.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~dIPVIIL 93 (663)
.+|||||||+.+|..++.+|+..||.|.++.++.+|++.+.+. .||+||+|+.||++||+++++.++ ..+++|||+|
T Consensus 5 ~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~~~--~~~lvl~Di~mp~~~Gl~ll~~i~~~~~~~pVI~~ 82 (464)
T COG2204 5 ARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALSES--PFDLVLLDIRMPGMDGLELLKEIKSRDPDLPVIVM 82 (464)
T ss_pred CCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCCEEEE
Confidence 4799999999999999999999999999999999999999875 699999999999999999999886 4579999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
|++.+.+.+.+|++.||.|||.|||+++.|...+++++...+.
T Consensus 83 Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 83 TGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred eCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999987554
No 6
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.74 E-value=4.5e-17 Score=142.42 Aligned_cols=110 Identities=42% Similarity=0.631 Sum_probs=103.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEe
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLS 94 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVIILS 94 (663)
||||||++..++.++.+|+..|| .|..+.++.+|+..++.. .||+||+|+.||+++|+++++.|+.. +.+|||++|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~~~~--~~d~iiid~~~~~~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELLKKH--PPDLIIIDLELPDGDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHS--TESEEEEESSSSSSBHHHHHHHHHHHTTTSEEEEEE
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHhccc--CceEEEEEeeeccccccccccccccccccccEEEec
Confidence 79999999999999999999999 999999999999999875 69999999999999999999988754 589999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q 128 (663)
...+.....+++++|+++||.||++.++|.++++
T Consensus 79 ~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~ 112 (112)
T PF00072_consen 79 DEDDSDEVQEALRAGADDYLSKPFSPEELRAAIN 112 (112)
T ss_dssp SSTSHHHHHHHHHTTESEEEESSSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhhC
Confidence 9999999999999999999999999999999874
No 7
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.72 E-value=3e-17 Score=164.68 Aligned_cols=122 Identities=34% Similarity=0.455 Sum_probs=111.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQ-YHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~g-y~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~dIPVI 91 (663)
++|+||||++.+|..|+.+|...+ ++|+ .+.++.++++.++.. .||+||+|+.||+++|+++++.|+ ..++++||
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~~~~--~pdvvl~Dl~mP~~~G~e~~~~l~~~~p~~~vv 78 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLAREL--KPDVVLLDLSMPGMDGLEALKQLRARGPDIKVV 78 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHhhhc--CCCEEEEcCCCCCCChHHHHHHHHHHCCCCcEE
Confidence 579999999999999999998875 7755 777899999997654 799999999999999999999887 56789999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccch
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKIDA 138 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~~ 138 (663)
++|.+.+..++.+++++||.+|+.|..++++|..+++.++.+..+..
T Consensus 79 vlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~G~~~~~ 125 (211)
T COG2197 79 VLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAAGGTYLP 125 (211)
T ss_pred EEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCeEeC
Confidence 99999999999999999999999999999999999999998875543
No 8
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.70 E-value=1.4e-16 Score=156.64 Aligned_cols=121 Identities=29% Similarity=0.446 Sum_probs=110.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcE
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPV 90 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~dIPV 90 (663)
|...-|-|||||...|+.+..+|+..||+|..+.++.+-|..... ..|-++|+|+.||+++|+++.+++. ....+||
T Consensus 2 ~~~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~~~--~~pGclllDvrMPg~sGlelq~~L~~~~~~~PV 79 (202)
T COG4566 2 PREPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAAPL--DRPGCLLLDVRMPGMSGLELQDRLAERGIRLPV 79 (202)
T ss_pred CCCCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhccC--CCCCeEEEecCCCCCchHHHHHHHHhcCCCCCE
Confidence 345579999999999999999999999999999999999987543 4789999999999999999999886 4568999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++|++++.....+|++.||.|||.|||+...|..++++++++.
T Consensus 80 IfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~~~ 123 (202)
T COG4566 80 IFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALARD 123 (202)
T ss_pred EEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764
No 9
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.68 E-value=1.6e-15 Score=135.76 Aligned_cols=120 Identities=40% Similarity=0.618 Sum_probs=105.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHH-HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAI-TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPV 90 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~-EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPV 90 (663)
.+.+||+|||++..+..++.+|...|+.|..+.++. +|++.++..+ .||+||+|+.||++||+++++.++.. ..+||
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~~~~~-~~dlii~D~~mp~~~G~~~~~~l~~~~~~~pv 82 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELLRELP-QPDLILLDINMPGMDGIELLRRLRARGPNIPV 82 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHHHhCC-CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCCE
Confidence 467999999999999999999999999999999995 9999998641 49999999999999999999999866 67889
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHH-HHHHHHHHHHh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVVRR 133 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~ee-L~~~~q~Vlrr 133 (663)
|++|++.......+++..|+++|+.||+...+ |..++++++..
T Consensus 83 v~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~ 126 (130)
T COG0784 83 ILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALRRLLAR 126 (130)
T ss_pred EEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHHHHHHh
Confidence 99999999887788899999999999977666 77777765543
No 10
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.67 E-value=1.5e-15 Score=151.57 Aligned_cols=123 Identities=22% Similarity=0.344 Sum_probs=110.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRC-QYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDL 88 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~-gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dI 88 (663)
|..++||||||++.++..++.+|+.. ++. |..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 2 ~~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~~~~--~pdlvllD~~mp~~~gle~~~~l~~~~~~~ 79 (225)
T PRK10046 2 TAPLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMIERF--KPGLILLDNYLPDGRGINLLHELVQAHYPG 79 (225)
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCC
Confidence 45689999999999999999999875 675 67899999999999764 7999999999999999999998875 4678
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
|||++|++.+...+.+++++||++||.||++.++|..+++++..++..
T Consensus 80 ~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~~ 127 (225)
T PRK10046 80 DVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQRKHM 127 (225)
T ss_pred CEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998876654
No 11
>PLN03029 type-a response regulator protein; Provisional
Probab=99.65 E-value=2.6e-15 Score=151.20 Aligned_cols=122 Identities=34% Similarity=0.590 Sum_probs=109.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC------------------CCceEEEEeCCCCCCC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENK------------------NKFDLVISDVHMPDMD 74 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k------------------~~pDLVIlDv~MPdmD 74 (663)
..++||||||++..+..+..+|+..||.|.++.++.+|+..+.... ..+||||+|+.||+++
T Consensus 7 ~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~~~ 86 (222)
T PLN03029 7 SQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPGMT 86 (222)
T ss_pred CCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCCCC
Confidence 3589999999999999999999999999999999999999886432 1368999999999999
Q ss_pred HHHHHHHHhcc---CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 75 GFKLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 75 G~eLLe~Ir~~---~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|+++++.++.. .++|||++++........+++.+||++||.||+...+|..++.++++.+
T Consensus 87 G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~~~ 149 (222)
T PLN03029 87 GYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMKTK 149 (222)
T ss_pred HHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHHHH
Confidence 99999999754 4799999999999999999999999999999999999999888877654
No 12
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.65 E-value=5.2e-15 Score=144.07 Aligned_cols=118 Identities=30% Similarity=0.380 Sum_probs=109.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
.+||||||++..+..+...|...+|.+..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pvi~lt 79 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAIPVIVLS 79 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999887653 69999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+..+.....+++.+||++||.||++.++|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~~~ 119 (225)
T PRK10529 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (225)
T ss_pred CCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999888753
No 13
>PRK11173 two-component response regulator; Provisional
Probab=99.64 E-value=7.8e-15 Score=145.05 Aligned_cols=119 Identities=24% Similarity=0.401 Sum_probs=110.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
..+||||||++..+..+...|+..|+.|..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||++
T Consensus 3 ~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~pii~l 80 (237)
T PRK11173 3 TPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEN--DINLVIMDINLPGKNGLLLARELREQANVALMFL 80 (237)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHhcCCCCCEEEE
Confidence 35899999999999999999999999999999999999988754 7999999999999999999999987778999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++..+.....+++..||++||.||++.++|..+++.++++.
T Consensus 81 t~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~r~ 121 (237)
T PRK11173 81 TGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (237)
T ss_pred ECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 99999888999999999999999999999999999988764
No 14
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.63 E-value=1.1e-15 Score=162.57 Aligned_cols=121 Identities=38% Similarity=0.525 Sum_probs=110.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC---C
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EM---D 87 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~---d 87 (663)
...++||+|||++..+..++.+|+..+|.|..+.++++|++++.+. .+|+||+|++||+|||+++|+.|+. .+ .
T Consensus 12 ~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~~~~--~~dlvllD~~mp~mdg~ev~~~lk~~~p~t~~ 89 (360)
T COG3437 12 DEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLLQEE--PPDLVLLDVRMPEMDGAEVLNKLKAMSPSTRR 89 (360)
T ss_pred cccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHhccc--CCceEEeeccCCCccHHHHHHHHHhcCCcccc
Confidence 3457999999999999999999999999999999999999999876 4999999999999999999998875 33 6
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+|||++|+..+.+...+|+..||++||.||+++.+|..++...+..+
T Consensus 90 ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv~~~~q~k 136 (360)
T COG3437 90 IPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARVSSHLQLK 136 (360)
T ss_pred cceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999996555433
No 15
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=99.63 E-value=2.7e-16 Score=127.97 Aligned_cols=55 Identities=64% Similarity=1.003 Sum_probs=52.7
Q ss_pred CCceeeehhhhHHHHHHHHHhcC-CCcchHHHHhhcCCCCCCHHHHHHhhhhhHhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGI-DKAVPKKILDLMNVEKLTRENVASHLQKYRLY 253 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~-dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRly 253 (663)
|+|+.||+|+|.+|++||+.||. +.|+||+|+++|++.+||+++|+|||||||+.
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~k 56 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRLK 56 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHcc
Confidence 68999999999999999999997 99999999999999999999999999999863
No 16
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.63 E-value=9.7e-15 Score=142.27 Aligned_cols=118 Identities=30% Similarity=0.428 Sum_probs=109.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
|+||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~l~~~lr~~~~~~pii~l 78 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYLNEH--LPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999988754 6999999999999999999998875 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++..+.....+++++||++||.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~~~ 119 (223)
T PRK10816 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (223)
T ss_pred EcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999888753
No 17
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.62 E-value=1.3e-14 Score=140.97 Aligned_cols=118 Identities=23% Similarity=0.434 Sum_probs=110.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
++||+|||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~ii~l~ 80 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIMQNQ--HVDLILLDINLPGEDGLMLTRELRSRSTVGIILVT 80 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988753 69999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+..+.....+++++||++||.||++.++|..+++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r~ 120 (221)
T PRK10766 81 GRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWRI 120 (221)
T ss_pred CCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999988764
No 18
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.62 E-value=1.5e-14 Score=139.24 Aligned_cols=118 Identities=33% Similarity=0.501 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
|+||||||++..+..+...|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~pii~l 78 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALLESG--HYSLVVLDLGLPDEDGLHLLRRWRQKKYTLPVLIL 78 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999999999999999999999988754 6999999999999999999998874 467999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++..+.....+++.+||++|+.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 119 (222)
T PRK10643 79 TARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIRRH 119 (222)
T ss_pred ECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999887654
No 19
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.62 E-value=1.5e-14 Score=141.37 Aligned_cols=117 Identities=26% Similarity=0.509 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVIIL 93 (663)
|+||||||++..+..+...|+..+|.|..+.++.++++.+... .||+||+|+.||+++|+++++.++.. +.+|||++
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~~~~~~g~~~~~~lr~~~~~~pii~l 78 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTG--DYDLIILDIMLPDVNGWDIVRMLRSANKGMPILLL 78 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999888653 69999999999999999999988754 68999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
++..+.+...+++++||++||.||++.++|..+++.++++
T Consensus 79 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 118 (227)
T PRK09836 79 TALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRR 118 (227)
T ss_pred EcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999988765
No 20
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.61 E-value=2.5e-14 Score=138.54 Aligned_cols=117 Identities=26% Similarity=0.471 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
|+||||||++..+..+...|+..++.|..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~ii~ls 78 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLALKD--DYALIILDIMLPGMDGWQILQTLRTAKQTPVICLT 78 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEE
Confidence 5899999999999999999999999999999999999988653 79999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+..+.....+++.+||++|+.||++.++|..+++.++++
T Consensus 79 ~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 117 (223)
T PRK11517 79 ARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLRQ 117 (223)
T ss_pred CCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999988764
No 21
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.60 E-value=2.7e-14 Score=141.26 Aligned_cols=118 Identities=22% Similarity=0.335 Sum_probs=109.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
.+||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~~~~--~~dlvild~~l~~~~g~~~~~~ir~~~~~pii~l~ 79 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATILRE--QPDLVLLDIMLPGKDGMTICRDLRPKWQGPIVLLT 79 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 3899999999999999999999999999999999999988754 79999999999999999999999876778999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+..+.....+++.+||++||.||++..+|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~~ 119 (240)
T PRK10701 80 SLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQN 119 (240)
T ss_pred CCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhcc
Confidence 9888888889999999999999999999999999888764
No 22
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.60 E-value=3e-14 Score=137.23 Aligned_cols=119 Identities=30% Similarity=0.487 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPV 90 (663)
..+||||||++..+..+...|+..++.|..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~d~vi~d~~~~~~~g~~~~~~l~~~~~~~~~~i 79 (226)
T TIGR02154 2 TRRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLINER--GPDLILLDWMLPGTSGIELCRRLRRRPETRAIPI 79 (226)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHHhc--CCCEEEEECCCCCCcHHHHHHHHHccccCCCCCE
Confidence 36899999999999999999998899999999999999988754 69999999999999999999988753 57899
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++++..+.....+++.+||++|+.||++.++|..+++.++++.
T Consensus 80 i~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 123 (226)
T TIGR02154 80 IMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRRI 123 (226)
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999888653
No 23
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.60 E-value=2.9e-14 Score=137.34 Aligned_cols=118 Identities=27% Similarity=0.370 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
|+||||||++..+..+..+|+..++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~i~~~~~~~~ii~l 78 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEALYSA--PYDAVILDLTLPGMDGRDILREWREKGQREPVLIL 78 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 5899999999999999999999999999999999999988653 6999999999999999999998875 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|+..+.....+++.+||++|+.||++.++|..+++.++++.
T Consensus 79 t~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (219)
T PRK10336 79 TARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMRRT 119 (219)
T ss_pred ECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999887653
No 24
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.60 E-value=2.9e-14 Score=138.83 Aligned_cols=117 Identities=34% Similarity=0.482 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
.+||||||++..+..+...|+..++.|..+.++.+++..+.. .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~---~~d~vl~d~~~~~~~g~~~~~~l~~~~~~~ii~lt 78 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLLDD---SIDLLLLDVMMPKKNGIDTLKELRQTHQTPVIMLT 78 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHhhc---CCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEEE
Confidence 389999999999999999999999999999999999998752 59999999999999999999988765559999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+..+.....+++++||++||.||++.++|..+++.++++.
T Consensus 79 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~ 118 (232)
T PRK10955 79 ARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRRS 118 (232)
T ss_pred CCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHhcc
Confidence 9999888999999999999999999999999999988764
No 25
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.59 E-value=3.4e-14 Score=139.02 Aligned_cols=117 Identities=27% Similarity=0.445 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPVI 91 (663)
.+||||||++..+..+...|+..|+.+..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~~pvi 80 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVV 80 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhccccCCCCEE
Confidence 5899999999999999999999899999999999999988753 69999999999999999999988753 579999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
++++..+.....+++.+||++||.||++.++|..+++.++++
T Consensus 81 ~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 81 MLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999988875
No 26
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.59 E-value=3.3e-14 Score=141.50 Aligned_cols=117 Identities=23% Similarity=0.420 Sum_probs=106.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSG 95 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA 95 (663)
+||||||++..+..|...|+..+|.|..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||++++
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~l~~~i~~~~~~pii~lt~ 80 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVLASE--TVDVVVVDLNLGREDGLEIVRSLATKSDVPIIIISG 80 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEEEC
Confidence 799999999999999999999999999999999999988754 799999999999999999999998777899999998
Q ss_pred CC-ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 96 NG-DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 96 ~~-d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
.. +.....+++.+||++||.||++.++|..+++.++++.
T Consensus 81 ~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~~~ 120 (241)
T PRK13856 81 DRLEEADKVVALELGATDFIAKPFGTREFLARIRVALRVR 120 (241)
T ss_pred CCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHhhc
Confidence 54 5666789999999999999999999999999888764
No 27
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.59 E-value=4.4e-14 Score=138.26 Aligned_cols=119 Identities=39% Similarity=0.577 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
.++||||||++..+..+...|...++.|..+.++.+++..+... .||+||+|+.||+.+|+++++.++..+.+|||++
T Consensus 6 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~~~~--~~d~illd~~~~~~~g~~~~~~l~~~~~~~ii~l 83 (240)
T CHL00148 6 KEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLFRKE--QPDLVILDVMMPKLDGYGVCQEIRKESDVPIIML 83 (240)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCcEEEE
Confidence 57999999999999999999999999999999999999988754 6999999999999999999999987778999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++..+.....+++.+||++||.||++.++|..+++.++++.
T Consensus 84 s~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~~ 124 (240)
T CHL00148 84 TALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLRRT 124 (240)
T ss_pred ECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 99999988999999999999999999999999999888654
No 28
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.59 E-value=6.2e-15 Score=173.12 Aligned_cols=122 Identities=26% Similarity=0.499 Sum_probs=112.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CC
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE--MD 87 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~--~d 87 (663)
.+-.|.+||||||+...++..+.+|++.|.+|+.+.++.||++++.. .+.||+||||++||.|||+++.++||+. ..
T Consensus 662 ~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~~-~~~y~~ifmD~qMP~mDG~e~~~~irk~~~~~ 740 (786)
T KOG0519|consen 662 KLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLKP-PHSYDVIFMDLQMPEMDGYEATREIRKKERWH 740 (786)
T ss_pred ccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcCC-CCcccEEEEEcCCcccchHHHHHHHHHhhcCC
Confidence 34568999999999999999999999999999999999999999973 3579999999999999999999999754 48
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
+|||+|||+.+.....+|++.|.++||.|||..+.|..+++.++.
T Consensus 741 ~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~~~ 785 (786)
T KOG0519|consen 741 LPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREFLL 785 (786)
T ss_pred CCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999987653
No 29
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.59 E-value=2e-14 Score=157.85 Aligned_cols=123 Identities=34% Similarity=0.518 Sum_probs=115.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIP 89 (663)
...+||||||+...++.++.+|...||.|..+.++.+|+..+.+. .||+||+|+.||++|||++++.+|.. ..+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~~e~--~~dlil~d~~mp~~dg~el~~~lr~~~~t~~ip 208 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQLAEL--PPDLVLLDANMPDMDGLELCTRLRQLERTRDIP 208 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHHhcC--CCcEEEEecCCCccCHHHHHHHHhccccccccc
Confidence 467999999999999999999999999999999999999999875 79999999999999999999988743 4799
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
||++++..+...+.+|++.|+.|||.||+...+|..+++..++++++.
T Consensus 209 ii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~~Rl~~~l~~~~~~ 256 (435)
T COG3706 209 IILLSSKDDDELVVRAFELGVNDYITKPIEEGELRARLRRQLRRKRYE 256 (435)
T ss_pred EEEEecccchHHHHHHHHcCCcceEecCCCHHHHHHHHHHHHHhhhHH
Confidence 999999999999999999999999999999999999999999887753
No 30
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.58 E-value=5.7e-14 Score=138.56 Aligned_cols=119 Identities=31% Similarity=0.480 Sum_probs=109.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVII 92 (663)
..+||||||++..+..++..|+..||.|..+.++.+++..+... .||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 5 ~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~lr~~~~~~pii~ 82 (239)
T PRK09468 5 NYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLLTRE--SFHLMVLDLMLPGEDGLSICRRLRSQNNPTPIIM 82 (239)
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46899999999999999999999999999999999999988753 69999999999999999999988754 6899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+++..+.....+++.+||++||.||++.++|..+++.++++.
T Consensus 83 ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~r~ 124 (239)
T PRK09468 83 LTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLRRQ 124 (239)
T ss_pred EECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999988764
No 31
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.58 E-value=6.4e-14 Score=136.56 Aligned_cols=117 Identities=27% Similarity=0.380 Sum_probs=107.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGLE-MDLPVIM 92 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPd--mDG~eLLe~Ir~~-~dIPVII 92 (663)
+||||||++..+..+...|+..+|.|..+.++.+++..+... .||+||+|+.||+ .+|+++++.++.. +.+|||+
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~~~g~~~~~~i~~~~~~~pii~ 79 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAFRQR--LPDLAIIDIGLGEEIDGGFMLCQDLRSLSATLPIIF 79 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHHhC--CCCEEEEECCCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 699999999999999999999999999999999999988754 6999999999998 5899999988754 6799999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+++..+......++.+||++|+.||++.++|..+++.++++.
T Consensus 80 ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 121 (227)
T TIGR03787 80 LTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRRA 121 (227)
T ss_pred EECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999988764
No 32
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.58 E-value=5.3e-14 Score=141.40 Aligned_cols=120 Identities=23% Similarity=0.381 Sum_probs=105.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRC-QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~-gy~V-~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
++||||||++..+..++.+|... ++.+ ..+.++.+++..+......||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~~~~~~DlvilD~~~p~~~G~eli~~l~~~~~~~~vI 81 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFNSDTPIDLILLDIYMQQENGLDLLPVLHEAGCKSDVI 81 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhcCCCCCEEEEecCCCCCCcHHHHHHHHhhCCCCCEE
Confidence 58999999999999999999864 6764 4788999999888642346999999999999999999998864 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++|+..+...+.+++..||++||.||++.++|..+++.++.+.
T Consensus 82 ~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~~~ 124 (239)
T PRK10430 82 VISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQKK 124 (239)
T ss_pred EEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998876544
No 33
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.58 E-value=5.8e-14 Score=135.78 Aligned_cols=118 Identities=31% Similarity=0.415 Sum_probs=108.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVIIL 93 (663)
++||||||++..+..+...|...+|.|..+.++.+++..+... .||+||+|+.||+.+|+++++.++.. +.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~ii~l 81 (228)
T PRK11083 4 PTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKLRQQ--PPDLVILDVGLPDISGFELCRQLLAFHPALPVIFL 81 (228)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEEE
Confidence 6899999999999999999999999999999999999888653 69999999999999999999988754 68999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++..+......++..||++||.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 122 (228)
T PRK11083 82 TARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILRRV 122 (228)
T ss_pred EcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHCcc
Confidence 99999888899999999999999999999999998887654
No 34
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.56 E-value=4.3e-14 Score=166.05 Aligned_cols=119 Identities=30% Similarity=0.463 Sum_probs=110.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----C
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-----M 86 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-----~ 86 (663)
|.+++||||||++..+..++.+|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++.. +
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlil~D~~mp~~~G~~~~~~ir~~~~~~~~ 765 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELGRQH--RFDLVLMDIRMPGLDGLETTQLWRDDPNNLDP 765 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhhcCC
Confidence 4468999999999999999999999999999999999999998764 79999999999999999999988752 5
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 87 dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.+|||++|++.+.....+++++|+++||.||++.++|..++..+++
T Consensus 766 ~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 811 (921)
T PRK15347 766 DCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAAE 811 (921)
T ss_pred CCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 6899999999999999999999999999999999999999987764
No 35
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.56 E-value=7.7e-14 Score=137.56 Aligned_cols=121 Identities=21% Similarity=0.335 Sum_probs=108.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHhc-cCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY-H-VTTTSQAITALKLLRENKNKFDLVISDVHMPD---MDGFKLLELVGL-EMD 87 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy-~-V~tasdg~EALelLre~k~~pDLVIlDv~MPd---mDG~eLLe~Ir~-~~d 87 (663)
+++||||||++..+..++.+|+..++ . |..+.++.++++.+... .||+||+|+.||+ ++|+++++.++. .+.
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~DlvllD~~l~~~~~~~g~~~~~~l~~~~~~ 80 (216)
T PRK10840 3 NMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKL--DAHVLITDLSMPGDKYGDGITLIKYIKRHFPS 80 (216)
T ss_pred ceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhC--CCCEEEEeCcCCCCCCCCHHHHHHHHHHHCCC
Confidence 47999999999999999999987664 3 66889999999988754 6999999999999 599999998864 578
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+|||++|.+.+...+.++++.||++||.||.+.++|..+++.++.+..+
T Consensus 81 ~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~g~~~ 129 (216)
T PRK10840 81 LSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQKGKKF 129 (216)
T ss_pred CcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHCCCee
Confidence 9999999999999999999999999999999999999999998876544
No 36
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.55 E-value=6.6e-14 Score=164.24 Aligned_cols=119 Identities=29% Similarity=0.458 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~dIP 89 (663)
..++||||||++..+..++.+|+..++.|..+.++.+|++.+.+. .||+||+|+.||++||+++++.++. .+.+|
T Consensus 666 ~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~lr~~~~~~~~p 743 (919)
T PRK11107 666 LPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQAKQR--PFDLILMDIQMPGMDGIRACELIRQLPHNQNTP 743 (919)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHhcccCCCCC
Confidence 367999999999999999999999999999999999999999764 7999999999999999999999975 35799
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
||++|++.......+|+++|+++||.||++.++|..+++++++.
T Consensus 744 ii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 787 (919)
T PRK11107 744 IIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYKPG 787 (919)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999887654
No 37
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.55 E-value=7.9e-14 Score=166.53 Aligned_cols=120 Identities=31% Similarity=0.499 Sum_probs=111.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|++||+|+|+++++.++. .+.+|||
T Consensus 800 ~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l~~~--~~DlVl~D~~mP~mdG~el~~~ir~~~~~~pII 877 (924)
T PRK10841 800 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLTDVNMPNMDGYRLTQRLRQLGLTLPVI 877 (924)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 568999999999999999999999999999999999999999864 7999999999999999999998875 4579999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++|+....+...+++++|+++||.||++.++|..++.++.++.
T Consensus 878 ~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~~~ 920 (924)
T PRK10841 878 GVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAERV 920 (924)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998877654
No 38
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.54 E-value=2.1e-14 Score=149.15 Aligned_cols=116 Identities=33% Similarity=0.499 Sum_probs=103.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~dIPVIIL 93 (663)
+||+|||||......|..+|.+.+..+.+|....+|+..+... +||||++|+.||+|+|+++++.++ ..+.+|||++
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~Le~~--kpDLifldI~mp~~ngiefaeQvr~i~~~v~iifI 78 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLLEVF--KPDLIFLDIVMPYMNGIEFAEQVRDIESAVPIIFI 78 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHHHhc--CCCEEEEEeecCCccHHHHHHHHHHhhccCcEEEE
Confidence 5899999999999999999999999999999999999999865 799999999999999999999887 4578999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++.+ +...++..-+.|||+||+.++.|..++.+..++.
T Consensus 79 ssh~e--ya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~v 117 (361)
T COG3947 79 SSHAE--YADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRV 117 (361)
T ss_pred ecchh--hhhhhcccchHhhccCCCCHHHHHHHHHHHhccc
Confidence 99876 4556666777999999999999999998877443
No 39
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.53 E-value=2.2e-13 Score=130.91 Aligned_cols=116 Identities=31% Similarity=0.515 Sum_probs=107.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSG 95 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIILSA 95 (663)
||||||++..+..+...|...++.+..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||++++
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~~~iivls~ 78 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLALKD--DYDLIILDVMLPGMDGWQILQTLRRSGKQTPVLFLTA 78 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHccCCCCcEEEEEc
Confidence 68999999999999999999999999999999999988754 6999999999999999999998874 56899999999
Q ss_pred CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 96 NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 96 ~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
..+.....+++.+||++|+.||++.++|..+++.++++.
T Consensus 79 ~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~~ 117 (218)
T TIGR01387 79 RDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLRRS 117 (218)
T ss_pred CCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999887654
No 40
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.53 E-value=2.2e-13 Score=130.48 Aligned_cols=118 Identities=19% Similarity=0.295 Sum_probs=107.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
|+||||||++..+..+...|+..++.+. .+.++.+++..+... .||+||+|+.+|+++|+++++.++. .+..|||+
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 78 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 78 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHcc--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEE
Confidence 6899999999999999999998899987 689999999988754 6999999999999999999998875 45789999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+++..+.....+++..||++|+.||++.++|..+++.++++.
T Consensus 79 ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 120 (204)
T PRK09958 79 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGY 120 (204)
T ss_pred EeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHcCC
Confidence 999999899999999999999999999999999999988654
No 41
>PRK09483 response regulator; Provisional
Probab=99.52 E-value=2.6e-13 Score=131.17 Aligned_cols=120 Identities=25% Similarity=0.326 Sum_probs=108.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
++||||||++..+..++.+|+.. ++.+. .+.++.+++..+... .||+||+|+.+|+++|+++++.++. .+.+|||
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii 79 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWCRTN--AVDVVLMDMNMPGIGGLEATRKILRYTPDVKII 79 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCeEE
Confidence 58999999999999999999875 78876 789999999988754 6999999999999999999998854 5679999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+++...+.....+++..|+++|+.||++.++|..+++.++++..+
T Consensus 80 ~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~g~~~ 124 (217)
T PRK09483 80 MLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHSGQRY 124 (217)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCCcc
Confidence 999999999999999999999999999999999999999876543
No 42
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.51 E-value=1.8e-13 Score=161.35 Aligned_cols=121 Identities=23% Similarity=0.332 Sum_probs=110.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
.+++||||||++..+..++.+|+..||.|..+.++.+|+..+... ..||+||+|+.||++||+++++.++. .+.+|||
T Consensus 680 ~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~-~~~Dlvl~D~~mp~~~G~~~~~~lr~~~~~~~ii 758 (914)
T PRK11466 680 DGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQNS-EPFAAALVDFDLPDYDGITLARQLAQQYPSLVLI 758 (914)
T ss_pred CCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEE
Confidence 367999999999999999999999999999999999999988643 36899999999999999999998875 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++|++.......+++..|+++||.||++.++|..+++++++..
T Consensus 759 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 801 (914)
T PRK11466 759 GFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQLQ 801 (914)
T ss_pred EEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999988643
No 43
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.51 E-value=1.4e-13 Score=131.51 Aligned_cols=111 Identities=25% Similarity=0.424 Sum_probs=104.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLS 94 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIILS 94 (663)
..||||||..++..|.+.+++-||.|.++.+.+||+..++.. .|..+++|+.|.+.+|+++++.|+. ..+..||++|
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~--~PayAvvDlkL~~gsGL~~i~~lr~~~~d~rivvLT 88 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAARTA--PPAYAVVDLKLGDGSGLAVIEALRERRADMRIVVLT 88 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHHhcC--CCceEEEEeeecCCCchHHHHHHHhcCCcceEEEEe
Confidence 699999999999999999999999999999999999999865 7999999999999999999998874 5689999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q 128 (663)
++.....+..|++.|||+||.||.+.+++..++.
T Consensus 89 Gy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl~ 122 (182)
T COG4567 89 GYASIATAVEAVKLGACDYLAKPADADDILAALL 122 (182)
T ss_pred cchHHHHHHHHHHhhhhhhcCCCCChHHHHHHHh
Confidence 9999999999999999999999999999987764
No 44
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.51 E-value=4.1e-13 Score=127.74 Aligned_cols=116 Identities=27% Similarity=0.337 Sum_probs=104.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRC-QYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~-gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
++||||||++..+..++.+|... ++. +..+.++.+++..+... .||+||+|+.+|+++|+++++.++ ..+|||+
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~--~~~~vi~ 77 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGLPGR--GVQVCICDISMPDISGLELLSQLP--KGMATIM 77 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHc--cCCCEEE
Confidence 58999999999999999999754 565 56889999999988753 699999999999999999999885 3689999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++.....+....++..||++|+.||++.++|..+++.++++.
T Consensus 78 ~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~~~ 119 (196)
T PRK10360 78 LSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVATGG 119 (196)
T ss_pred EECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999999999999998764
No 45
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.50 E-value=1.1e-13 Score=148.01 Aligned_cols=118 Identities=26% Similarity=0.433 Sum_probs=106.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIP 89 (663)
...+||||||++..+..|..+|.+ .+.+..+.++.+|+..+.+. .||+||+|+.||+++|+++++.++.. +.+|
T Consensus 154 ~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~~~~--~~d~vi~d~~~p~~~g~~l~~~i~~~~~~~~~~ 230 (457)
T PRK09581 154 EDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNAAET--NYDLVIVSANFENYDPLRLCSQLRSKERTRYVP 230 (457)
T ss_pred cCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhcccC--CCCEEEecCCCCCchHhHHHHHHHhccccCCCc
Confidence 467899999999999999999976 57777899999999987653 79999999999999999999999742 6899
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
||++|++.+.+++.+|+..||+|||.||+++++|...+...+++
T Consensus 231 ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~~~~~ 274 (457)
T PRK09581 231 ILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRTQIRR 274 (457)
T ss_pred EEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998876654
No 46
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.50 E-value=4.2e-13 Score=133.06 Aligned_cols=115 Identities=28% Similarity=0.426 Sum_probs=99.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-E-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY-H-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy-~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
++||||||++..+..|+.+|+..+. . +..+.++.+++..+... .||+||+|+.||+++|+++++.++.....+||+
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~--~~dlv~lDi~~~~~~G~~~~~~l~~~~~~~ii~ 79 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAIHRL--KPDVVFLDIQMPRISGLELVGMLDPEHMPYIVF 79 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHhcccCCCEEEE
Confidence 6899999999999999999998773 4 45788999999988754 699999999999999999999886444456888
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+|++. +.+.++++.||.+||.||++.++|..++.++.+.
T Consensus 80 vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~~ 118 (238)
T PRK11697 80 VTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQE 118 (238)
T ss_pred EeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHh
Confidence 88765 4678899999999999999999999999988754
No 47
>PRK14084 two-component response regulator; Provisional
Probab=99.50 E-value=5e-13 Score=133.63 Aligned_cols=116 Identities=22% Similarity=0.393 Sum_probs=100.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-C-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQ-Y-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~g-y-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVI 91 (663)
++||||||++..+..++.+|...+ + .+..+.++.+++..+.+. .||+||+|+.||+++|+++++.++.. ...+||
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~~~~--~~dlv~lDi~m~~~~G~~~~~~i~~~~~~~~iI 78 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEALLIN--QYDIIFLDINLMDESGIELAAKIQKMKEPPAII 78 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEE
Confidence 589999999999999999998865 4 467899999999988754 69999999999999999999988754 456788
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++|++.+ .+.++++.||.+||.||++.++|..++++++++.
T Consensus 79 ~~t~~~~--~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~~~ 119 (246)
T PRK14084 79 FATAHDQ--FAVKAFELNATDYILKPFEQKRIEQAVNKVRATK 119 (246)
T ss_pred EEecChH--HHHHHHhcCCcEEEECCCCHHHHHHHHHHHHHhh
Confidence 8887654 5778999999999999999999999999887653
No 48
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.50 E-value=4.9e-13 Score=135.58 Aligned_cols=118 Identities=30% Similarity=0.452 Sum_probs=104.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC---CC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM---DL 88 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~---dI 88 (663)
.++||||||++..+..+..+|... ++.+. .+.++.+|++.+... .||+||+|+.||+++|+++++.++... ..
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~~~l~~i~~~~~~~~~ 79 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELIKEQ--QPDVVVLDIIMPHLDGIGVLEKLNEIELSARP 79 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhccccCC
Confidence 479999999999999999999864 55654 789999999998864 699999999999999999999887532 37
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|||++|+........+++..|+++|+.||++.++|..++++++++
T Consensus 80 ~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~~~ 124 (262)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAWG 124 (262)
T ss_pred eEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 899999999999999999999999999999999999999887654
No 49
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.48 E-value=1.3e-12 Score=128.04 Aligned_cols=118 Identities=28% Similarity=0.423 Sum_probs=108.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
.+||||||++..+..+..+|...++.|..+.++.+++..+... .||+||+|+.||+++|+++++.++....+|||+++
T Consensus 11 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~g~~~~~~l~~~~~~pii~l~ 88 (240)
T PRK10710 11 PRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYVRQT--PPDLILLDLMLPGTDGLTLCREIRRFSDIPIVMVT 88 (240)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 3899999999999999999999999999999999999988753 69999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
...+......++.+||++|+.||++.++|..+++.++++.
T Consensus 89 ~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~~~ 128 (240)
T PRK10710 89 AKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILRRC 128 (240)
T ss_pred cCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHhhc
Confidence 9988888889999999999999999999999998887653
No 50
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.48 E-value=4e-13 Score=158.94 Aligned_cols=118 Identities=26% Similarity=0.355 Sum_probs=109.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CC---Cc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MD---LP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~d---IP 89 (663)
+.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +. +|
T Consensus 702 ~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvl~D~~mp~~~g~~~~~~ir~~~~~~~~~p 779 (968)
T TIGR02956 702 PQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECFHQH--AFDLALLDINLPDGDGVTLLQQLRAIYGAKNEVK 779 (968)
T ss_pred ccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHCC--CCCEEEECCCCCCCCHHHHHHHHHhCccccCCCe
Confidence 46899999999999999999999999999999999999999863 79999999999999999999999753 23 89
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
||++|++...+...+++.+|+++||.||++.++|..++..++..
T Consensus 780 ii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 823 (968)
T TIGR02956 780 FIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILAG 823 (968)
T ss_pred EEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999988754
No 51
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.48 E-value=1.3e-12 Score=124.84 Aligned_cols=119 Identities=22% Similarity=0.370 Sum_probs=106.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPV 90 (663)
..+||||||++..+..++..|... ++.+. .+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvild~~l~~~~g~~~~~~l~~~~~~~~i 80 (210)
T PRK09935 3 PASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYLRTR--PVDLIIMDIDLPGTDGFTFLKRIKQIQSTVKV 80 (210)
T ss_pred cceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999876 57775 688999999888753 7999999999999999999998875 467999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++++..+.....+++..|+++|+.||++.++|..+++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~~~ 124 (210)
T PRK09935 81 LFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILSGY 124 (210)
T ss_pred EEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHcCC
Confidence 99999999889999999999999999999999999999888764
No 52
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.48 E-value=4.9e-13 Score=145.54 Aligned_cols=120 Identities=30% Similarity=0.562 Sum_probs=110.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
..++||||||++..+..++.+|...+|.|..+.++.+++..+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~DlvilD~~m~~~~G~~~~~~ir~~~~~~~vi 81 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQVREQ--VFDLVLCDVRMAEMDGIATLKEIKALNPAIPVL 81 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEE
Confidence 458999999999999999999999999999999999999988753 6999999999999999999998864 4679999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++|++.+.+.+.++++.||.+||.||++.++|..+++.++++.
T Consensus 82 ~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~~ 124 (441)
T PRK10365 82 IMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAHT 124 (441)
T ss_pred EEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999887653
No 53
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.47 E-value=2e-12 Score=124.54 Aligned_cols=118 Identities=31% Similarity=0.508 Sum_probs=107.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
|+||+|||++..+..++..|...++.+..+.++.+++..+... .||+||+|+.+|+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~vild~~~~~~~~~~~~~~i~~~~~~~~ii~l 78 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLLQSE--MYALAVLDINMPGMDGLEVLQRLRKRGQTLPVLLL 78 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999899999999999998887653 6999999999999999999998864 457999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+...+.....+++..||++|+.||++.++|..+++.++++.
T Consensus 79 t~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 119 (221)
T PRK15479 79 TARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLRRS 119 (221)
T ss_pred ECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHhhh
Confidence 99999899999999999999999999999999999887754
No 54
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.47 E-value=8.9e-13 Score=144.34 Aligned_cols=120 Identities=29% Similarity=0.481 Sum_probs=109.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
...+||||||++..+..+...|...||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlillD~~~p~~~g~~ll~~i~~~~~~~pvI 80 (457)
T PRK11361 3 AINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLFADI--HPDVVLMDIRMPEMDGIKALKEMRSHETRTPVI 80 (457)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 456899999999999999999999999999999999999988754 6999999999999999999998864 4679999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++|++.+...+.++++.||.+||.||++.++|...++.++...
T Consensus 81 ~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~ 123 (457)
T PRK11361 81 LMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQ 123 (457)
T ss_pred EEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhcccc
Confidence 9999999999999999999999999999999999888776543
No 55
>PRK15115 response regulator GlrR; Provisional
Probab=99.47 E-value=7.1e-13 Score=144.93 Aligned_cols=118 Identities=33% Similarity=0.509 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
..+||||||++..+..+...|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 5 ~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l~~~--~~dlvilD~~lp~~~g~~ll~~l~~~~~~~pvIv 82 (444)
T PRK15115 5 PAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVLNRE--KVDLVISDLRMDEMDGMQLFAEIQKVQPGMPVII 82 (444)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 47999999999999999999999999999999999999988754 6999999999999999999998864 46799999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+|+..+...+.+++..||.+||.||++.++|..+++.+++.
T Consensus 83 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 83 LTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred EECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 56
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.46 E-value=1.3e-12 Score=144.08 Aligned_cols=118 Identities=31% Similarity=0.446 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
.+||||||++..+..++.+|+..+|.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l~~~--~~DlvllD~~lp~~dgl~~l~~ir~~~~~~pvIvl 81 (469)
T PRK10923 4 GIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVIIM 81 (469)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEECCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 5899999999999999999999999999999999999999754 6999999999999999999998864 467999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++.+.+.+.++++.||.+||.||++.++|...+++++...
T Consensus 82 t~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 122 (469)
T PRK10923 82 TAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (469)
T ss_pred ECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887643
No 57
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.46 E-value=7.6e-13 Score=154.07 Aligned_cols=117 Identities=22% Similarity=0.366 Sum_probs=104.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC-Cc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MD-LP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~d-IP 89 (663)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.|+.. .. .|
T Consensus 525 ~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~~~~--~~Dlvl~D~~mp~~~G~e~~~~ir~~~~~~~~~~ 602 (779)
T PRK11091 525 ALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMFDPD--EYDLVLLDIQLPDMTGLDIARELRERYPREDLPP 602 (779)
T ss_pred ccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEcCCCCCCCHHHHHHHHHhccccCCCCc
Confidence 58999999999999999999999999999999999999999753 79999999999999999999998754 34 48
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
||++|++... ...+++.+|+++||.||++.++|..++++++..
T Consensus 603 ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 645 (779)
T PRK11091 603 LVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWDT 645 (779)
T ss_pred EEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhcc
Confidence 9999987654 467899999999999999999999999887744
No 58
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.44 E-value=1.4e-12 Score=138.58 Aligned_cols=115 Identities=21% Similarity=0.310 Sum_probs=97.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLR-RCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~-~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
++||||||++..+..++.+|. ..+++|. .+.++.+|++.+.+. .||+||+|+.||+++|+++++.++....+|||+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l~~~--~pDlVllD~~mp~~~G~e~l~~l~~~~~~pviv 78 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERCAAQ--PPDVILMDLEMPRMDGVEATRRIMAERPCPILI 78 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhcc--CCCEEEEcCCCCCCCHHHHHHHHHHHCCCcEEE
Confidence 589999999999999999994 5678876 789999999998764 799999999999999999999997766799999
Q ss_pred EecCCC--hHHHHHHHhcCCceEEeCCC---------CHHHHHHHHHHHH
Q 006057 93 LSGNGD--PKLVMKGITHGACDYLLKPV---------RIEELKNIWQHVV 131 (663)
Q Consensus 93 LSA~~d--~e~v~kAl~aGA~DYLlKPv---------s~eeL~~~~q~Vl 131 (663)
+++..+ .....++++.|+.+|+.||+ ..++|...++.+.
T Consensus 79 vs~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~~~~~~~~l~~~i~~~~ 128 (337)
T PRK12555 79 VTSLTERNASRVFEAMGAGALDAVDTPTLGIGAGLEEYAAELLAKIDQIG 128 (337)
T ss_pred EeCCCCcCHHHHHHHHhcCceEEEECCCCCcchhHHHHHHHHHHHHHHHh
Confidence 998754 45677899999999999999 4445555555444
No 59
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.44 E-value=1.2e-12 Score=158.90 Aligned_cols=119 Identities=33% Similarity=0.538 Sum_probs=109.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPV 90 (663)
+..++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 956 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlil~D~~mp~~~g~~~~~~i~~~~~~~pi 1033 (1197)
T PRK09959 956 PEKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKVSMQ--HYDLLITDVNMPNMDGFELTRKLREQNSSLPI 1033 (1197)
T ss_pred ccCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 3467999999999999999999999999999999999999999754 7999999999999999999998875 467999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|++|+..+.....+++..|+++||.||++.++|..+++.+++
T Consensus 1034 i~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1034 WGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred EEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987754
No 60
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.43 E-value=1.6e-12 Score=142.16 Aligned_cols=114 Identities=26% Similarity=0.383 Sum_probs=103.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHHhc-cCCCcE
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-----MDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPd-----mDG~eLLe~Ir~-~~dIPV 90 (663)
||||||++..+..+...| .+|.|..+.++.+|++.+... .||+||+|+.||+ ++|+++++.++. .+.+||
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l~~~--~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~pi 76 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALVRRH--EPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKV 76 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCE
Confidence 689999999999999888 689999999999999999864 7999999999996 899999998864 568999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++|++.+.+.+.++++.||++||.||++.++|..+++.+++..
T Consensus 77 I~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~~~ 120 (445)
T TIGR02915 77 IVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFHLY 120 (445)
T ss_pred EEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhhhh
Confidence 99999999999999999999999999999999999998877543
No 61
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.43 E-value=3e-12 Score=120.13 Aligned_cols=120 Identities=31% Similarity=0.445 Sum_probs=108.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPV 90 (663)
|...+||||||++..+..+...|...+|.+..+.++.+++..+... .||+||+|+.+|+++|+++++.++. .+.+||
T Consensus 1 ~~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~d~ii~d~~~~~~~~~~~~~~l~~~~~~~~i 78 (202)
T PRK09390 1 SDKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDALPGL--RFGCVVTDVRMPGIDGIELLRRLKARGSPLPV 78 (202)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHhccC--CCCEEEEeCCCCCCcHHHHHHHHHhcCCCCCE
Confidence 3457899999999999999999999999999999999999888653 6999999999999999999998864 467999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|+++...+.....+++..|+.+|+.||+..++|..+++.+++.
T Consensus 79 i~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~~~ 121 (202)
T PRK09390 79 IVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERALAQ 121 (202)
T ss_pred EEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHHHh
Confidence 9999999989999999999999999999999999998887764
No 62
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.43 E-value=1.1e-11 Score=106.06 Aligned_cols=118 Identities=29% Similarity=0.538 Sum_probs=105.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIP 89 (663)
.++|+++|+++..+..++..|...++. +..+.++.+++..+.+. .+|+|++|..+++++|+++++.++.. +.+|
T Consensus 5 ~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~di~l~d~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (129)
T PRK10610 5 ELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GFGFVISDWNMPNMDGLELLKTIRADGAMSALP 82 (129)
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHhhcc--CCCEEEEcCCCCCCCHHHHHHHHHhCCCcCCCc
Confidence 479999999999999999999988884 77788999999887653 69999999999999999999988653 4689
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+|+++.........+++..|+.+|+.||++.++|...++.++++
T Consensus 83 ~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~~ 126 (129)
T PRK10610 83 VLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEK 126 (129)
T ss_pred EEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHHH
Confidence 99999888888889999999999999999999999999988765
No 63
>PRK13435 response regulator; Provisional
Probab=99.42 E-value=4.5e-12 Score=116.66 Aligned_cols=117 Identities=22% Similarity=0.311 Sum_probs=101.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MP-dmDG~eLLe~Ir~~~dIPVI 91 (663)
.++|||+|+++..+..++..|...++.+. .+.++.++++.+.+. .||+||+|+.++ +.+|+++++.++....+|||
T Consensus 5 ~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~dliivd~~~~~~~~~~~~~~~l~~~~~~pii 82 (145)
T PRK13435 5 QLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALGRRR--QPDVALVDVHLADGPTGVEVARRLSADGGVEVV 82 (145)
T ss_pred cceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHhhhc--CCCEEEEeeecCCCCcHHHHHHHHHhCCCCCEE
Confidence 57999999999999999999998899876 789999999888653 699999999998 58999999988766789999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+++...+ ...++..|+++|+.||++.++|..++++++.+..
T Consensus 83 ~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 123 (145)
T PRK13435 83 FMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLSARRV 123 (145)
T ss_pred EEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHHhcCc
Confidence 9987643 2467789999999999999999999999876553
No 64
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.41 E-value=2.8e-12 Score=140.79 Aligned_cols=116 Identities=33% Similarity=0.523 Sum_probs=106.7
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSG 95 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIILSA 95 (663)
||||||++..+..+..+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++|+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlVllD~~~p~~~g~~ll~~l~~~~~~~~vIvlt~ 78 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRALARG--QPDLLITDVRMPGEDGLDLLPQIKKRHPQLPVIVMTA 78 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHHhCCCCeEEEEeC
Confidence 68999999999999999999999999999999999988754 6999999999999999999998864 46799999999
Q ss_pred CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 96 NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 96 ~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+.+.....+++.+|+.+||.||++.++|..++++++...
T Consensus 79 ~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~~ 117 (463)
T TIGR01818 79 HSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHA 117 (463)
T ss_pred CCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887643
No 65
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.40 E-value=6.9e-12 Score=134.31 Aligned_cols=119 Identities=33% Similarity=0.500 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPVI 91 (663)
.+|||||+++..+..+...|...+|.|..+.++.+++..+... .||+||+|+.||+.+|+++++.++.. +.+|||
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~l~~~i~~~~~~~~~~ii 80 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAICERE--QPDIILLDVMMPGMDGFEVCRRLKSDPATTHIPVV 80 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 3899999999999999999998899999999999999998754 69999999999999999999999753 368999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
++++..+.....+++..||++|+.||++.++|..+++.+++...
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~~~~ 124 (457)
T PRK09581 81 MVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTRLKM 124 (457)
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988876543
No 66
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.39 E-value=1.4e-12 Score=131.04 Aligned_cols=109 Identities=15% Similarity=0.155 Sum_probs=92.8
Q ss_pred HHHHHHHHHh---CCCEEEEECCHHHHHHHHHhcCCCceEEE---EeCCCCCCCHHHHHHHHh-ccCCCcEEEEecCCCh
Q 006057 27 LLLLETLLRR---CQYHVTTTSQAITALKLLRENKNKFDLVI---SDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDP 99 (663)
Q Consensus 27 r~iL~~lL~~---~gy~V~tasdg~EALelLre~k~~pDLVI---lDv~MPdmDG~eLLe~Ir-~~~dIPVIILSA~~d~ 99 (663)
|..++.+|.. .+|.|..+.+++++++.+... .||+|| +|+.||+++|++++++++ ..+.+|||++|++.+.
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~~~~--~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p~~~iIvlt~~~~~ 80 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAMSRI--SFSAVIFSLSAMRSERREGLSCLTELAIKFPRMRRLVIADDDIE 80 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHhccC--CCCEEEeeccccCCCCCCHHHHHHHHHHHCCCCCEEEEeCCCCH
Confidence 6788888865 356677899999999988653 689998 688999999999999885 4678999999998877
Q ss_pred HHHHHHH-hcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 100 KLVMKGI-THGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 100 e~v~kAl-~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
..+.+++ ++||.+||.||.+.++|..+++.++++..+.
T Consensus 81 ~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G~~~~ 119 (207)
T PRK11475 81 ARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNGVRQA 119 (207)
T ss_pred HHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCCCccc
Confidence 7666665 7999999999999999999999999886544
No 67
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.37 E-value=5.4e-12 Score=127.43 Aligned_cols=118 Identities=13% Similarity=0.089 Sum_probs=98.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH-HHHh-ccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLL-ELVG-LEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLL-e~Ir-~~~dIPVI 91 (663)
..+|++|||+|..+..|+.+|+..--.+..+.++.+|+..+. .|||||+|+.||+++|++++ +.++ ..+.++||
T Consensus 10 ~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~~----~~DvvllDi~~p~~~G~~~~~~~i~~~~p~~~vv 85 (216)
T PRK10100 10 GHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDIS----SGSIILLDMMEADKKLIHYWQDTLSRKNNNIKIL 85 (216)
T ss_pred CceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccCC----CCCEEEEECCCCCccHHHHHHHHHHHhCCCCcEE
Confidence 456999999999999999999853334557788999988643 48999999999999999997 5565 45789999
Q ss_pred EEecCCChHHHHHHHh--cCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 92 MLSGNGDPKLVMKGIT--HGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~--aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
++|+..+ ....++. .||.+|+.|+.+.++|..+++.++++..+.
T Consensus 86 vlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~G~~~~ 131 (216)
T PRK10100 86 LLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLRGECYF 131 (216)
T ss_pred EEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHcCCccc
Confidence 9999877 3445555 499999999999999999999999877654
No 68
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.37 E-value=9.6e-12 Score=132.87 Aligned_cols=104 Identities=29% Similarity=0.451 Sum_probs=91.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.++||||||++..+..++.+|... ++.+. .+.++.+|+..+... .||+|++|+.||+++|+++++.++....+|||
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~~~~--~~DlVllD~~mp~~dgle~l~~i~~~~~~piI 80 (354)
T PRK00742 3 KIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKIKKL--NPDVITLDVEMPVMDGLDALEKIMRLRPTPVV 80 (354)
T ss_pred ccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHHhhh--CCCEEEEeCCCCCCChHHHHHHHHHhCCCCEE
Confidence 479999999999999999999876 78877 889999999988754 69999999999999999999988765559999
Q ss_pred EEecCCC--hHHHHHHHhcCCceEEeCCCC
Q 006057 92 MLSGNGD--PKLVMKGITHGACDYLLKPVR 119 (663)
Q Consensus 92 ILSA~~d--~e~v~kAl~aGA~DYLlKPvs 119 (663)
++++... .....++++.||++||.||+.
T Consensus 81 vls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 81 MVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred EEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 9997543 456778999999999999994
No 69
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.36 E-value=2.4e-11 Score=114.53 Aligned_cols=120 Identities=20% Similarity=0.352 Sum_probs=105.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIP 89 (663)
..++||||||++..+..+...|... ++.++ .+.++.+++..+... .||+||+|+.+|+++|+++++.++. .+.+|
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~~~~~~~~~~~~~l~~~~~~~~ 79 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNACRQL--EPDIVILDLGLPGMNGLDVIPQLHQRWPAMN 79 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHHCCCCc
Confidence 3578999999999999999999875 46654 788999999877653 6999999999999999999998864 46789
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+|++++..+......++..|+.+|+.||++..+|..+++.++++.
T Consensus 80 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 124 (211)
T PRK15369 80 ILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAVGK 124 (211)
T ss_pred EEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999887653
No 70
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.35 E-value=5.2e-12 Score=126.29 Aligned_cols=149 Identities=9% Similarity=-0.024 Sum_probs=112.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHHHHHHHh-ccCCC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY---HVTTTSQAITALKLLRENKNKFDLVISDVH--MPDMDGFKLLELVG-LEMDL 88 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy---~V~tasdg~EALelLre~k~~pDLVIlDv~--MPdmDG~eLLe~Ir-~~~dI 88 (663)
|.||||||++..+..++.+|+..++ .|..+.++.+++..+... .||+||+|+. +|..+|+++++.++ ..+.+
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~~~~--~pDlvLlDl~~~l~~~~g~~~i~~i~~~~p~~ 78 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIACDSL--RPSVVFINEDCFIHDASNSQRIKQIINQHPNT 78 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHHhcc--CCCEEEEeCcccCCCCChHHHHHHHHHHCCCC
Confidence 4699999999999999999987653 355789999999988643 6999999966 88889999999886 46789
Q ss_pred cEEEEecCCChHHHHHHHhcCCce-EEeCCCCHHHHHHHHHHHHHhhccchhhccCCCCCCCCCCCCCcccCCCCCcccC
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACD-YLLKPVRIEELKNIWQHVVRRKKIDAKDQNNSDNQDKPHNGSGQAEGMGNSDQNG 167 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~D-YLlKPvs~eeL~~~~q~Vlrr~~~~~k~~~~s~~~~k~~~~sg~~~~vg~~~~~G 167 (663)
+||++|++.+..... ++..|+.. |+.|+.++++|..+++.++++..+...... .....++.++..+....+.|
T Consensus 79 ~iivlt~~~~~~~~~-~~~~~~~~~~~~K~~~~~~L~~aI~~v~~g~~~~~~~~~-----~~~~~LT~RE~eVL~lla~G 152 (207)
T PRK15411 79 LFIVFMAIANIHFDE-YLLVRKNLLISSKSIKPESLDDLLGDILKKETTITSFLN-----LPTLSLSRTESSMLRMWMAG 152 (207)
T ss_pred eEEEEECCCchhHHH-HHHHHhhceeeeccCCHHHHHHHHHHHHcCCcccCcccc-----CCcccCCHHHHHHHHHHHcC
Confidence 999999988776543 55555554 899999999999999999987655422110 01112556666666666666
Q ss_pred cccc
Q 006057 168 KLNK 171 (663)
Q Consensus 168 k~~K 171 (663)
..+|
T Consensus 153 ~snk 156 (207)
T PRK15411 153 QGTI 156 (207)
T ss_pred CCHH
Confidence 5554
No 71
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.35 E-value=2.3e-11 Score=115.83 Aligned_cols=119 Identities=24% Similarity=0.312 Sum_probs=104.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~-~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPV 90 (663)
.++|||||+++..+..+...|.. .++.+. .+.++.+++..+... .||+||+|+.+|+++|+++++.++.. +..|+
T Consensus 6 ~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~~~~~~~~l~~~~~~~~i 83 (215)
T PRK10403 6 PFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLANRL--DPDVILLDLNMKGMSGLDTLNALRRDGVTAQI 83 (215)
T ss_pred eEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCcHHHHHHHHHHhCCCCeE
Confidence 36899999999999999999975 477765 688999999887653 69999999999999999999988654 57899
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|+++...+......++..|+++|+.||++.++|..+++.++++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~~~ 127 (215)
T PRK10403 84 IILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAKGS 127 (215)
T ss_pred EEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhCCC
Confidence 99999888888899999999999999999999999999887543
No 72
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.33 E-value=1e-11 Score=142.26 Aligned_cols=118 Identities=22% Similarity=0.256 Sum_probs=104.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..+..+|...+|.|..+.++.+++..+... .|||||+|+.||+++|+++++.++. .+.+|||+
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~~~~--~~Dlvl~d~~lp~~~g~~~l~~l~~~~~~~piI~ 84 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRVEAG--EIDCVVADHEPDGFDGLALLEAVRQTTAVPPVVV 84 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHhhcc--CCCEEEEeccCCCCcHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999998899999999999999988753 6999999999999999999998874 56899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHH--HHHHHHHHHHHh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIE--ELKNIWQHVVRR 133 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~e--eL~~~~q~Vlrr 133 (663)
+|+..+...+.+++..|+.+||.||.... .+..+++.++..
T Consensus 85 lt~~~~~~~~~~al~~Ga~dyl~k~~~~~~~~l~~~i~~~~~~ 127 (665)
T PRK13558 85 VPTAGDEAVARRAVDADAAAYVPAVSDDATAAIAERIESAVPE 127 (665)
T ss_pred EECCCCHHHHHHHHhcCcceEEeccchhHHHHHHHHHHHhhhc
Confidence 99999999999999999999999997643 666666666543
No 73
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.32 E-value=4.4e-11 Score=114.25 Aligned_cols=119 Identities=23% Similarity=0.357 Sum_probs=105.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPV 90 (663)
..+|||||+++..+..++.+|... ++.+. .+.++.+++..+... .||+||+|+.+|+++|+++++.++. .+..|+
T Consensus 6 ~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~dlvl~d~~l~~~~~~~~~~~l~~~~~~~~v 83 (216)
T PRK10651 6 PATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGRI 83 (216)
T ss_pred ceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcE
Confidence 468999999999999999999764 56654 688999999988754 6999999999999999999998864 467899
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|+++...+......++..|+.+|+.||++.++|...++.++++.
T Consensus 84 i~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~~~ 127 (216)
T PRK10651 84 VVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAAGE 127 (216)
T ss_pred EEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHCCC
Confidence 99999999899999999999999999999999999999988654
No 74
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.31 E-value=2.6e-11 Score=130.24 Aligned_cols=103 Identities=30% Similarity=0.431 Sum_probs=92.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
+|||||||.+..|..|+++|...+ +.|.++.++.+|++.+.+. .||+|.+|+.||.|||+++++.|-....+||||
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~~~~--~PDVi~ld~emp~mdgl~~l~~im~~~p~pVim 79 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKVKKL--KPDVITLDVEMPVMDGLEALRKIMRLRPLPVIM 79 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhc--CCCEEEEecccccccHHHHHHHHhcCCCCcEEE
Confidence 799999999999999999999988 4566899999999999865 799999999999999999999887778999999
Q ss_pred EecCCC--hHHHHHHHhcCCceEEeCCCC
Q 006057 93 LSGNGD--PKLVMKGITHGACDYLLKPVR 119 (663)
Q Consensus 93 LSA~~d--~e~v~kAl~aGA~DYLlKPvs 119 (663)
+++-.. .+...+|++.||.||+.||..
T Consensus 80 vsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 80 VSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred EeccccccHHHHHHHHhcCcceeecCCCc
Confidence 987544 457889999999999999974
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.27 E-value=1e-10 Score=117.68 Aligned_cols=116 Identities=22% Similarity=0.345 Sum_probs=99.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir~~~dIPVI 91 (663)
..+||||||++..+..++..|+..++.+. .+.++.+++..+.+. .||+||+|+.||+ ++|+++++.++....+|||
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l~~~--~~dlvi~d~~~~~~~~g~e~l~~l~~~~~~pii 214 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALAKKT--RPGLILADIQLADGSSGIDAVNDILKTFDVPVI 214 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHhcc--CCCEEEEecCCCCCCCHHHHHHHHHHhCCCCEE
Confidence 35799999999999999999998899887 688999999988753 6999999999995 8999999988654489999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
++++..+... .+...|+.+|+.||++.++|..++++++..
T Consensus 215 ~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~~ 254 (261)
T PRK09191 215 FITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALFF 254 (261)
T ss_pred EEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHhc
Confidence 9999776543 344567899999999999999999887654
No 76
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.24 E-value=5.2e-11 Score=118.04 Aligned_cols=121 Identities=26% Similarity=0.387 Sum_probs=105.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
.+|||++||++..+..+...|...||.++ .+.++.++.+..... .||+||+|+.+|..|-.+-+.+.......|||+
T Consensus 5 ~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~~~~--~pDvVildie~p~rd~~e~~~~~~~~~~~piv~ 82 (194)
T COG3707 5 LLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVCERL--QPDVVILDIEMPRRDIIEALLLASENVARPIVA 82 (194)
T ss_pred ccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHHHhc--CCCEEEEecCCCCccHHHHHHHhhcCCCCCEEE
Confidence 47999999999999999999999999765 667788888877754 799999999999999555555555667889999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
++++.+++.+.+++++||.+||+||++...|+.++.-++.+...
T Consensus 83 lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~vA~srf~~ 126 (194)
T COG3707 83 LTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILDVAVSRFEE 126 (194)
T ss_pred EEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999888776543
No 77
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.23 E-value=1.4e-10 Score=137.16 Aligned_cols=118 Identities=20% Similarity=0.221 Sum_probs=107.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
+.+||||||++..+..++..|...||+|+.+.++.+|++.+.+....||+||+ .||+++|+++++.++. .+.+|||+
T Consensus 697 ~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~~~~~~DlVll--~~~~~~g~~l~~~l~~~~~~ipIIv 774 (828)
T PRK13837 697 GETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISKGPERFDLVLV--DDRLLDEEQAAAALHAAAPTLPIIL 774 (828)
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhCCCCceEEEE--CCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 56899999999999999999999999999999999999999765445899999 7999999999998864 56899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+++........+++..| ++||.||++..+|..+++++++..
T Consensus 775 ls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~~~ 815 (828)
T PRK13837 775 GGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALATA 815 (828)
T ss_pred EeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHccc
Confidence 99999988899999999 999999999999999999988653
No 78
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.20 E-value=3.6e-10 Score=91.63 Aligned_cols=111 Identities=40% Similarity=0.594 Sum_probs=98.5
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecC
Q 006057 18 LAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGN 96 (663)
Q Consensus 18 LIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIILSA~ 96 (663)
|++|+++..+..+...|...++.+..+.+..+++..+... .+|+||+|..+++.+|+++++.++. .+.+|+|+++..
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~ 78 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALLAEE--KPDLILLDIMMPGMDGLELLRRIRKRGPDIPIIFLTAH 78 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHHHhC--CCCEEEEecCCCCCchHHHHHHHHHhCCCCCEEEEEec
Confidence 4789999999999999999899999999999999888754 6999999999999999999988865 467899999988
Q ss_pred CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 006057 97 GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (663)
Q Consensus 97 ~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~V 130 (663)
.......+++..|+.+|+.||++.++|...++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~~~ 112 (113)
T cd00156 79 GDDEDAVEALKAGADDYLTKPFSPEELLARIRAL 112 (113)
T ss_pred ccHHHHHHHHHcChhhHccCCCCHHHHHHHHHhh
Confidence 7778888999999999999999999998888654
No 79
>PRK13557 histidine kinase; Provisional
Probab=99.13 E-value=8.5e-10 Score=120.85 Aligned_cols=119 Identities=25% Similarity=0.360 Sum_probs=106.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir~-~~dIPVI 91 (663)
+.+||||||++..+..+..+|...+|.+..+.++.+|+..+... ..||+||+|..+|+ ++|+++++.++. .+.+|||
T Consensus 415 ~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~d~vi~d~~~~~~~~~~~~~~~l~~~~~~~~ii 493 (540)
T PRK13557 415 TETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILDSH-PEVDLLFTDLIMPGGMNGVMLAREARRRQPKIKVL 493 (540)
T ss_pred CceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHhcC-CCceEEEEeccCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 56899999999999999999999999999999999999988643 35999999999997 999999998875 4679999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+++..........++..|+.+|+.||++.++|..+++.++..
T Consensus 494 ~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~ 535 (540)
T PRK13557 494 LTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVLDG 535 (540)
T ss_pred EEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHhcC
Confidence 999998888888899999999999999999999999887653
No 80
>PRK10693 response regulator of RpoS; Provisional
Probab=99.05 E-value=1.2e-09 Score=115.01 Aligned_cols=90 Identities=28% Similarity=0.447 Sum_probs=79.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEeCCC-CH
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV-RI 120 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPv-s~ 120 (663)
.+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+|||++|+..+.+.+.+++++||+|||.||+ +.
T Consensus 2 ~a~~g~~al~~l~~~--~pDlVL~D~~mp~~~Gle~~~~ir~~~~~ipiI~lt~~~~~~~~~~al~~Ga~dyl~KP~~~~ 79 (303)
T PRK10693 2 LAANGVDALELLGGF--TPDLIICDLAMPRMNGIEFVEHLRNRGDQTPVLVISATENMADIAKALRLGVQDVLLKPVKDL 79 (303)
T ss_pred EeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCcH
Confidence 467889999988753 79999999999999999999988754 679999999999999999999999999999999 58
Q ss_pred HHHHHHHHHHHHhh
Q 006057 121 EELKNIWQHVVRRK 134 (663)
Q Consensus 121 eeL~~~~q~Vlrr~ 134 (663)
++|..+++.+++..
T Consensus 80 ~~L~~~i~~~l~~~ 93 (303)
T PRK10693 80 NRLREMVFACLYPS 93 (303)
T ss_pred HHHHHHHHHHhhhh
Confidence 99999998877543
No 81
>PRK15029 arginine decarboxylase; Provisional
Probab=98.88 E-value=1.6e-08 Score=118.69 Aligned_cols=117 Identities=14% Similarity=0.187 Sum_probs=91.3
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH----HHHHHH
Q 006057 15 LRVLAVDDDPT--------CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF----KLLELV 82 (663)
Q Consensus 15 lRVLIVDDD~~--------~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~----eLLe~I 82 (663)
|||||||||.. .++.|+..|+..||+|..+.++++|+..+... ..||+||+|+.||+++|+ +++++|
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l~~~-~~~DlVLLD~~LPd~dG~~~~~ell~~I 79 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc-CCCcEEEEECCCCCCccchhHHHHHHHH
Confidence 58999999995 69999999999999999999999999999752 369999999999999998 899988
Q ss_pred hc-cCCCcEEEEecCCC--hHHHHHHHhcCCceEEeCCCCHHHH-HHHHHHHHHh
Q 006057 83 GL-EMDLPVIMLSGNGD--PKLVMKGITHGACDYLLKPVRIEEL-KNIWQHVVRR 133 (663)
Q Consensus 83 r~-~~dIPVIILSA~~d--~e~v~kAl~aGA~DYLlKPvs~eeL-~~~~q~Vlrr 133 (663)
|. ..++|||++|+..+ ...... .-.-+.+|+-+--+..++ ..++....++
T Consensus 80 R~~~~~iPIIlLTar~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (755)
T PRK15029 80 HERQQNVPVFLLGDREKALAAMDRD-LLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_pred HhhCCCCCEEEEEcCCcccccCCHH-HHHhhheEEEecCCCHHHHHHHHHHHHHH
Confidence 75 46899999999886 332222 223356788777554444 4445555443
No 82
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=98.85 E-value=1.4e-08 Score=104.62 Aligned_cols=115 Identities=29% Similarity=0.464 Sum_probs=98.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRC-QYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~-gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
++|+++||++..++.|..++... .++ +..+.++.+++..+... .+|++++|+.||+++|+++.+.++. .+..+|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~fldI~~~~~~G~ela~~i~~~~~~~~Iv 79 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLLQGL--RPDLVFLDIAMPDINGIELAARIRKGDPRPAIV 79 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHHhcc--CCCeEEEeeccCccchHHHHHHhcccCCCCeEE
Confidence 68999999999999999999842 233 33788999999999865 7999999999999999999999987 4567788
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
++|++.+ ++..+++..|.|||.||+..+.|..++....+.
T Consensus 80 fvt~~~~--~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~~ 119 (244)
T COG3279 80 FVTAHDE--YAVAAFEVEALDYLLKPISEERLAKTLERLRRY 119 (244)
T ss_pred EEEehHH--HHHHHHhHHHHhhhcCcchHHHHHHHHHHHHHH
Confidence 8898765 667788889999999999999999999877654
No 83
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.23 E-value=1.3e-05 Score=94.89 Aligned_cols=114 Identities=18% Similarity=0.173 Sum_probs=95.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH-HHhc--cCCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE-LVGL--EMDL 88 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe-~Ir~--~~dI 88 (663)
..+.+|+|+||++..+..+..+|..+|+.|..+.+..+ +.. ..||++|+|+.||+.++...+. .++. ....
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l~~--~~~d~il~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----LPE--AHYDILLLGLPVTFREPLTMLHERLAKAKSMTD 607 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----hcc--CCCCEEEecccCCCCCCHHHHHHHHHhhhhcCC
Confidence 45789999999999999999999999999999888777 222 3699999999999988776654 3332 2345
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
++|+++...+......+.+.|+++|+.||+...+|...+....
T Consensus 608 ~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 650 (919)
T PRK11107 608 FLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALLEPC 650 (919)
T ss_pred cEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHHHhh
Confidence 7888888888888899999999999999999999988887544
No 84
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=97.99 E-value=6.9e-06 Score=91.27 Aligned_cols=96 Identities=33% Similarity=0.422 Sum_probs=85.2
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCC
Q 006057 39 YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118 (663)
Q Consensus 39 y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPv 118 (663)
|+|.++..+.+|+..+..+ .||++|+|+.||+++|++++++++..+.. |+++|+..+...-.+++++|+++||.||+
T Consensus 13 ~~v~~a~~g~~~l~~~~~~--~~~~~lld~~m~~~~~~~~~~~lk~~~~~-~v~~t~~~~~~~~~~~~~~~~~~~l~~~~ 89 (435)
T COG3706 13 KEVATAKKGLIALAILLDH--KPDYKLLDVMMPGMDGFELCRRLKAEPAT-VVMVTALDDSAPRVRGLKAGADDFLTKPV 89 (435)
T ss_pred hhhhhccchHHHHHHHhcC--CCCeEEeecccCCcCchhHHHHHhcCCcc-eEEEEecCCCCcchhHHhhhhhhhccCCC
Confidence 5777799999999988864 79999999999999999999999877655 88999999888889999999999999999
Q ss_pred CHHHHHHHHHHHHHhhccc
Q 006057 119 RIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 119 s~eeL~~~~q~Vlrr~~~~ 137 (663)
....+..+...+.+.+...
T Consensus 90 ~~~~~~~r~~~l~~~k~~~ 108 (435)
T COG3706 90 NDSQLFLRAKSLVRLKCSI 108 (435)
T ss_pred ChHHHHHhhhhhccchhhH
Confidence 9999999998887766443
No 85
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.45 E-value=0.001 Score=46.70 Aligned_cols=55 Identities=45% Similarity=0.704 Sum_probs=48.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP 71 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MP 71 (663)
++|+++++++..+..+...+...++.+..+.+..+++..+... .+|+|++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELLKEE--KPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCC
Confidence 4799999999999999999999999999999999998887643 699999998654
No 86
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.24 E-value=0.0025 Score=58.31 Aligned_cols=106 Identities=16% Similarity=0.189 Sum_probs=73.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCCcEEEEe
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV-GLEMDLPVIMLS 94 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~I-r~~~dIPVIILS 94 (663)
||||||||...|..|+.+|+=.|+++..+....- .....+. ..+.+++-..-.. ...++++.+ +..+.+|||++.
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~~~~--~~~~~~v~~g~~~-~~~~~l~~l~~~~~~~Pvlllg 76 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQADWSS--PWEACAVILGSCS-KLAELLKELLKWAPHIPVLLLG 76 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhhhhc--CCcEEEEEecCch-hHHHHHHHHHhhCCCCCEEEEC
Confidence 6999999999999999999999999887765443 2223322 3444444332222 344556544 567899999998
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~V 130 (663)
........ ..+.+-|..|++..+|...++++
T Consensus 77 ~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 77 EHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred CCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 77665111 12667799999999999999875
No 87
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=96.35 E-value=0.12 Score=47.98 Aligned_cols=111 Identities=14% Similarity=0.075 Sum_probs=80.0
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCC--HHHHHHHHhcc-
Q 006057 16 RVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDMD--GFKLLELVGLE- 85 (663)
Q Consensus 16 RVLIV----DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MPdmD--G~eLLe~Ir~~- 85 (663)
||++. |.+..-...+..+|+..||+|.... ..++.++.+.+. ++|+|.+-..++..- --++++.+++.
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~--~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAAIQE--DVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 45555 6777778889999999999998554 477788887765 799999977664321 12345555544
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 006057 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q 128 (663)
+..+.|++.+....+...++.++|++.|+..-...++....++
T Consensus 79 ~~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~~~ 121 (122)
T cd02071 79 AGDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDKIR 121 (122)
T ss_pred CCCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHh
Confidence 4344566666566667888899999999999999888876653
No 88
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=95.85 E-value=0.35 Score=46.18 Aligned_cols=116 Identities=15% Similarity=0.023 Sum_probs=84.9
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006057 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDM--DGFKLLELVGL 84 (663)
Q Consensus 14 glRVLIV----DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MPdm--DG~eLLe~Ir~ 84 (663)
+.+||+. |.+..-...+..+|+..||+|+... ..++.++.+.+. .+|+|.+-..+... .-.++++.++.
T Consensus 3 ~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~--~~d~V~lS~~~~~~~~~~~~~~~~L~~ 80 (137)
T PRK02261 3 KKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAAIET--DADAILVSSLYGHGEIDCRGLREKCIE 80 (137)
T ss_pred CCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCccccCHHHHHHHHHHHHh
Confidence 4578887 7888888899999999999998654 567777777764 79999998877642 22345556654
Q ss_pred c-C-CCcEEEEecCC------ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 85 E-M-DLPVIMLSGNG------DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 85 ~-~-dIPVIILSA~~------d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
. . +++|+ +.+.. ..+...++.+.|++.+.......+++...++..+.
T Consensus 81 ~~~~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~~~~~ 135 (137)
T PRK02261 81 AGLGDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLKKDLN 135 (137)
T ss_pred cCCCCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 3 3 55544 44432 34456788899999999999999999888876653
No 89
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=95.62 E-value=0.015 Score=70.66 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=45.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG 75 (663)
...|.+||||||++..+..+..+|+..|+.|..+.+.. . ...|||||+|+.+ .++|
T Consensus 686 ~l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~~------~--~~~~Dlvl~D~~~-~~~~ 741 (894)
T PRK10618 686 LLDGVTVLLDITSEEVRKIVTRQLENWGATCITPDERL------I--SQEYDIFLTDNPS-NLTA 741 (894)
T ss_pred cCCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCccc------c--CCCCCEEEECCCC-cCCC
Confidence 34588999999999999999999999999999887531 1 2369999999983 4443
No 90
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=95.54 E-value=0.56 Score=44.58 Aligned_cols=117 Identities=12% Similarity=0.033 Sum_probs=79.6
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHH-HHHHHHhc
Q 006057 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMP-DMDGF-KLLELVGL 84 (663)
Q Consensus 14 glRVLIV----DDD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MP-dmDG~-eLLe~Ir~ 84 (663)
+.||++. |-+..-...+..+|+..||+|+.. .+.++.++.+.+. .+|+|.+-..+. .+..+ ++++.+++
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~--~adii~iSsl~~~~~~~~~~~~~~L~~ 79 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDK 79 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEcCchhhhHHHHHHHHHHHHh
Confidence 3456554 555666778899999999999854 4678888887765 689888755442 22222 23345544
Q ss_pred c-CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 85 E-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 85 ~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
. .....|++.+..-.+...+..++|+++|+..--+..++...+...++
T Consensus 80 ~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~~~~~ 128 (132)
T TIGR00640 80 LGRPDILVVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLLKKLR 128 (132)
T ss_pred cCCCCCEEEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 3 32333455554455567778999999999999999999888877553
No 91
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=95.38 E-value=0.16 Score=46.83 Aligned_cols=105 Identities=13% Similarity=0.140 Sum_probs=75.7
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHh-ccCCCcEEEEecCCChHHHH
Q 006057 27 LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVG-LEMDLPVIMLSGNGDPKLVM 103 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPd--mDG~eLLe~Ir-~~~dIPVIILSA~~d~e~v~ 103 (663)
...|...|+..|++|+.+.+.++++..++.. ..+..|++|+. ++ ....++++.++ ....+||.+++.....+.+-
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~~~-~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~iPVFl~~~~~~~~~l~ 83 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIESF-TDIAAVVISWD-GEEEDEAQELLDKIRERNFGIPVFLLAERDTTEDLP 83 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHHCT-TTEEEEEEECH-HHHHHHHHHHHHHHHHHSTT-EEEEEESCCHHHCCC
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHHhC-CCeeEEEEEcc-cccchhHHHHHHHHHHhCCCCCEEEEecCCCcccCC
Confidence 4567778888899999999999999999875 47999999987 11 12345677665 45789999999866555555
Q ss_pred HHHhcCCceEEeCCCC-HHHHHHHHHHHHHh
Q 006057 104 KGITHGACDYLLKPVR-IEELKNIWQHVVRR 133 (663)
Q Consensus 104 kAl~aGA~DYLlKPvs-~eeL~~~~q~Vlrr 133 (663)
..+-.-+++|+...-+ .+.+...+..++++
T Consensus 84 ~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~ 114 (115)
T PF03709_consen 84 AEVLGEVDGFIWLFEDTAEFIARRIEAAARR 114 (115)
T ss_dssp HHHHCCESEEEETTTTTHHHHHHHHHHHHHH
T ss_pred HHHHhhccEEEEecCCCHHHHHHHHHHHHHh
Confidence 5555667888888754 55556666666543
No 92
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=95.32 E-value=0.24 Score=45.12 Aligned_cols=95 Identities=11% Similarity=-0.026 Sum_probs=64.9
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhccCC-CcEEEEe
Q 006057 21 DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPDM--DGFKLLELVGLEMD-LPVIMLS 94 (663)
Q Consensus 21 DDD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPdm--DG~eLLe~Ir~~~d-IPVIILS 94 (663)
|.+..-...+..+|+..||+|+.. ...++.++.+.+. +||+|.+-..+... ...++++.+++... -+.|++.
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~--~pdvV~iS~~~~~~~~~~~~~i~~l~~~~~~~~~i~vG 87 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAAKEE--DADAIGLSGLLTTHMTLMKEVIEELKEAGLDDIPVLVG 87 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHHcCCCCCeEEEE
Confidence 666777888999999999999753 3466777777764 79999998765432 33456666665432 2345566
Q ss_pred cCCChHHHHHHHhcCCceEEeCC
Q 006057 95 GNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKP 117 (663)
+.........+.+.|++.|+...
T Consensus 88 G~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 88 GAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred CCCCChhHHHHHHcCCeEEECCH
Confidence 55555545678889997777644
No 93
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=94.69 E-value=0.048 Score=42.47 Aligned_cols=48 Identities=31% Similarity=0.322 Sum_probs=39.4
Q ss_pred ceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhH
Q 006057 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYR 251 (663)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyR 251 (663)
|..||+|-+.+|++||..+|.+ --+.|.+.|+ .+-|..++.+|.++|+
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~--~W~~Ia~~~~-~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKD--NWKKIAKRMP-GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTT--HHHHHHHHHS-SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCc--HHHHHHHHcC-CCCCHHHHHHHHHhhC
Confidence 4579999999999999999966 4578888884 5999999999988864
No 94
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.95 E-value=0.36 Score=51.56 Aligned_cols=84 Identities=17% Similarity=0.163 Sum_probs=55.9
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe-cCCChHHHHHHHhcCCceEEeC
Q 006057 38 QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS-GNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 38 gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS-A~~d~e~v~kAl~aGA~DYLlK 116 (663)
|.+++.+.+..++-+... .-.+|++|..+ ...+-.........||++. ...+.+..+++++.||.+||.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~----~~~~v~~~~~~-----~~~~~~~~~p~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~ 71 (322)
T TIGR03815 1 GVELDVAPDPEAARRAWA----RAPLVLVDADM-----AEACAAAGLPRRRRVVLVGGGEPGGALWRAAAAVGAEHVAVL 71 (322)
T ss_pred CCceEEccCchhhhhccc----cCCeEEECchh-----hhHHHhccCCCCCCEEEEeCCCCCHHHHHHHHHhChhheeeC
Confidence 345666666666544433 45789998744 1111111111223355444 4567889999999999999999
Q ss_pred CCCHHHHHHHHHHH
Q 006057 117 PVRIEELKNIWQHV 130 (663)
Q Consensus 117 Pvs~eeL~~~~q~V 130 (663)
|++.++|..++..+
T Consensus 72 P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 72 PEAEGWLVELLADL 85 (322)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999998776
No 95
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=92.91 E-value=1 Score=53.73 Aligned_cols=115 Identities=15% Similarity=0.119 Sum_probs=76.5
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 006057 15 LRVLAVDDDP-T-----CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMD 87 (663)
Q Consensus 15 lRVLIVDDD~-~-----~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~d 87 (663)
|+|+||+++- . ..+.|...|++.||+|..+.+..+++..++.. ..+..|++|+.-. ..++++.++ ...+
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 76 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIEHN-PRICGVIFDWDEY---SLDLCSDINQLNEY 76 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhcc-cceeEEEEecccc---hHHHHHHHHHhCCC
Confidence 5788888773 1 24567778888899999999999999998854 5789999996332 355777765 4578
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCC-HHHHHHHHHHHHHh
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-IEELKNIWQHVVRR 133 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs-~eeL~~~~q~Vlrr 133 (663)
+||+++........+....-.-+++|+..-.. .+.+...+...+++
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~ 123 (713)
T PRK15399 77 LPLYAFINTHSTMDVSVQDMRMALWFFEYALGAAEDIAIRIRQYTNE 123 (713)
T ss_pred CCEEEEcCccccccCChhHhhhcceeeeeccCCHHHHHHHHHHHHHH
Confidence 99999876554333333333345666665433 44444445555443
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=92.43 E-value=1.1 Score=53.67 Aligned_cols=115 Identities=16% Similarity=0.199 Sum_probs=74.6
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCC
Q 006057 15 LRVLAVDDDP-T-----CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMD 87 (663)
Q Consensus 15 lRVLIVDDD~-~-----~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~d 87 (663)
|+||||+++. . ..+.|...|++.||+|..+.+..+++.+++.. ..+..|++|+.- . ..++++.++ ...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~-~~~~~~~~~~~~~~ 76 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDK--Y-NLELCEEISKMNEN 76 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc-cceeEEEEecch--h-hHHHHHHHHHhCCC
Confidence 5788887662 1 24567778888999999999999999988854 578999999533 2 244777765 4578
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHh
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRR 133 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPv-s~eeL~~~~q~Vlrr 133 (663)
+||+++........+....-.-+++|+..-- +.+.+...+...+++
T Consensus 77 ~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~i~~~~~~ 123 (714)
T PRK15400 77 LPLYAFANTYSTLDVSLNDLRLQVSFFEYALGAADDIANKIKQTTDE 123 (714)
T ss_pred CCEEEEccccccccCChHHhhhccceeeeccCCHHHHHHHHHHHHHH
Confidence 9999987654333222222233455655433 344444445544443
No 97
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=92.31 E-value=3.2 Score=39.86 Aligned_cols=110 Identities=13% Similarity=0.039 Sum_probs=75.3
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhcc-CCCcEEEEe
Q 006057 21 DDDPTCLLLLETLLRRCQYHVTT---TSQAITALKLLRENKNKFDLVISDVHMPD-MDGF-KLLELVGLE-MDLPVIMLS 94 (663)
Q Consensus 21 DDD~~~r~iL~~lL~~~gy~V~t---asdg~EALelLre~k~~pDLVIlDv~MPd-mDG~-eLLe~Ir~~-~dIPVIILS 94 (663)
|-+..-..++..+|+..||+|+. ....++.++.+.+. ++|+|-+-..|-. +..+ ++.+.+++. ..-++|++.
T Consensus 12 D~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa~~~--~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivG 89 (134)
T TIGR01501 12 DCHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAAIET--KADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVG 89 (134)
T ss_pred ChhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEec
Confidence 33455567889999999999984 45678888888765 7999998777642 2222 234455543 222445565
Q ss_pred cC-----CChH-HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 95 GN-----GDPK-LVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 95 A~-----~d~e-~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
+. .+.. ...++.+.|++......-.++++.+.+++.++
T Consensus 90 G~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~~~~ 133 (134)
T TIGR01501 90 GNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKKDLN 133 (134)
T ss_pred CCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHHHhc
Confidence 53 1221 24568899999999988999999998887764
No 98
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=91.78 E-value=1.7 Score=45.70 Aligned_cols=92 Identities=22% Similarity=0.260 Sum_probs=66.9
Q ss_pred hCCCEEE-EE-CCHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHHHHHHHHhccCCCcEEEEecCCChHHHHH
Q 006057 36 RCQYHVT-TT-SQAITALKLLRENKNKFDLVISDVHMP---------DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 36 ~~gy~V~-ta-sdg~EALelLre~k~~pDLVIlDv~MP---------dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~k 104 (663)
+.||.|. .| .+...|.++..- .+++| || +..-.++++.+++..++|||+=.+-...+.+.+
T Consensus 121 ~~Gf~vlpyc~dd~~~ar~l~~~---G~~~v-----mPlg~pIGsg~Gi~~~~~I~~I~e~~~vpVI~egGI~tpeda~~ 192 (248)
T cd04728 121 KEGFTVLPYCTDDPVLAKRLEDA---GCAAV-----MPLGSPIGSGQGLLNPYNLRIIIERADVPVIVDAGIGTPSDAAQ 192 (248)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHHHHHHHHHhCCCcEEEeCCCCCHHHHHH
Confidence 3489887 55 556666555543 57777 55 121257788787767899998888899999999
Q ss_pred HHhcCCceEEe-----CCCCHHHHHHHHHHHHHhhc
Q 006057 105 GITHGACDYLL-----KPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 105 Al~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr~~ 135 (663)
+++.||+..++ |.-++..+..++...+...+
T Consensus 193 AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av~aGr 228 (248)
T cd04728 193 AMELGADAVLLNTAIAKAKDPVAMARAFKLAVEAGR 228 (248)
T ss_pred HHHcCCCEEEEChHhcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999864 55667888777777776544
No 99
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=91.69 E-value=3.8 Score=36.86 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=57.9
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCC-CCCCC-HHHHHHHHhcc-CCCcEEEEec
Q 006057 22 DDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVH-MPDMD-GFKLLELVGLE-MDLPVIMLSG 95 (663)
Q Consensus 22 DD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~-MPdmD-G~eLLe~Ir~~-~dIPVIILSA 95 (663)
-++.-...+..+|++.||+|... ...++..+.+++. +||+|.+.+. .+... ..++++.++.. ++++||+=-.
T Consensus 12 ~~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~--~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~ 89 (121)
T PF02310_consen 12 VHPLGLLYLAAYLRKAGHEVDILDANVPPEELVEALRAE--RPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP 89 (121)
T ss_dssp STSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHT--TCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred chhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcC--CCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 45677889999999999999866 2346666777664 7999999884 34332 34555666554 4566665444
Q ss_pred CCChHHHHHHHh--cCCceEEeC
Q 006057 96 NGDPKLVMKGIT--HGACDYLLK 116 (663)
Q Consensus 96 ~~d~e~v~kAl~--aGA~DYLlK 116 (663)
+. ......+++ .|++..+.-
T Consensus 90 ~~-t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 90 HA-TADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp SS-GHHHHHHHHHHHTSEEEEEE
T ss_pred ch-hcChHHHhccCcCcceecCC
Confidence 33 333444454 565555443
No 100
>PRK00208 thiG thiazole synthase; Reviewed
Probab=91.37 E-value=1.8 Score=45.66 Aligned_cols=92 Identities=21% Similarity=0.237 Sum_probs=67.1
Q ss_pred hCCCEEE-EE-CCHHHHHHHHHhcCCCceEEEEeCCCC---------CCCHHHHHHHHhccCCCcEEEEecCCChHHHHH
Q 006057 36 RCQYHVT-TT-SQAITALKLLRENKNKFDLVISDVHMP---------DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 36 ~~gy~V~-ta-sdg~EALelLre~k~~pDLVIlDv~MP---------dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~k 104 (663)
+.||.|. .| .+...|.++..- .+++| || +..-.++++.+++..++|||+=.+-...+.+.+
T Consensus 121 ~~Gf~vlpyc~~d~~~ak~l~~~---G~~~v-----mPlg~pIGsg~gi~~~~~i~~i~e~~~vpVIveaGI~tpeda~~ 192 (250)
T PRK00208 121 KEGFVVLPYCTDDPVLAKRLEEA---GCAAV-----MPLGAPIGSGLGLLNPYNLRIIIEQADVPVIVDAGIGTPSDAAQ 192 (250)
T ss_pred HCCCEEEEEeCCCHHHHHHHHHc---CCCEe-----CCCCcCCCCCCCCCCHHHHHHHHHhcCCeEEEeCCCCCHHHHHH
Confidence 4489887 55 556666655543 57877 55 111156788777667899999888899999999
Q ss_pred HHhcCCceEEe-----CCCCHHHHHHHHHHHHHhhc
Q 006057 105 GITHGACDYLL-----KPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 105 Al~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr~~ 135 (663)
+++.||+..++ |.-++..+..++...+...+
T Consensus 193 AmelGAdgVlV~SAItka~dP~~ma~af~~Av~aGr 228 (250)
T PRK00208 193 AMELGADAVLLNTAIAVAGDPVAMARAFKLAVEAGR 228 (250)
T ss_pred HHHcCCCEEEEChHhhCCCCHHHHHHHHHHHHHHHH
Confidence 99999999864 65667888888877776543
No 101
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=90.02 E-value=5.2 Score=40.47 Aligned_cols=84 Identities=19% Similarity=0.220 Sum_probs=57.6
Q ss_pred HHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCcEEEEecCCChH
Q 006057 30 LETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVH-------MPDMDGFKLLELVGLEMDLPVIMLSGNGDPK 100 (663)
Q Consensus 30 L~~lL~~-~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~-------MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e 100 (663)
+.+.+++ .+..+. .+.+.+++..+... .+|+|.+... ......+++++.++...++|||...+-.+.+
T Consensus 110 ~i~~~~~~~~i~vi~~v~t~ee~~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~iPvia~GGI~t~~ 186 (221)
T PRK01130 110 LVKRIKEYPGQLLMADCSTLEEGLAAQKL---GFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVGCPVIAEGRINTPE 186 (221)
T ss_pred HHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCCCCEEEECCCCCHH
Confidence 3344444 455543 55677777655443 5888865321 1223347788888776689999988888899
Q ss_pred HHHHHHhcCCceEEeC
Q 006057 101 LVMKGITHGACDYLLK 116 (663)
Q Consensus 101 ~v~kAl~aGA~DYLlK 116 (663)
.+.++++.||+.++.-
T Consensus 187 ~~~~~l~~GadgV~iG 202 (221)
T PRK01130 187 QAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHHHCCCCEEEEc
Confidence 9999999999988665
No 102
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=88.99 E-value=1.4 Score=41.77 Aligned_cols=115 Identities=17% Similarity=0.197 Sum_probs=79.4
Q ss_pred CCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH-HHhc
Q 006057 6 VNGDQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE-LVGL 84 (663)
Q Consensus 6 ~~~~~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe-~Ir~ 84 (663)
.+....-.|-|.+.||.+.........+|...+.+|+.-.. +..+-. ..||++|+.+-.+-.+-..+.+ ++.+
T Consensus 3 gp~~~~L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t----~~~lp~--~hYD~~Ll~vavtfr~n~tm~~~~l~~ 76 (140)
T COG4999 3 GPSTACLAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPT----FSALPP--AHYDMMLLGVAVTFRENLTMQHERLAK 76 (140)
T ss_pred CcchhhhccceeEEecCccHHHHHHHHHHhcCCceEEeccc----ccccCh--hhhceeeecccccccCCchHHHHHHHH
Confidence 34445667889999999999999999999999999986433 222222 2699999999887776666553 3321
Q ss_pred c--C-CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 006057 85 E--M-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (663)
Q Consensus 85 ~--~-dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~ 127 (663)
. + +--|+.+-. ...-.+.+....|+.++|.||++...|...+
T Consensus 77 Al~mtd~vilalPs-~~qv~AeqLkQ~g~~~CllKPls~~rLlptl 121 (140)
T COG4999 77 ALSMTDFVILALPS-HAQVNAEQLKQDGAGACLLKPLSSTRLLPTL 121 (140)
T ss_pred HHhhhcceEEecCc-HHHHhHHHHhhcchHhHhhCcchhhhhHHHH
Confidence 1 1 222222322 2334567788899999999999998887633
No 103
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=87.95 E-value=8.1 Score=38.85 Aligned_cols=99 Identities=15% Similarity=0.082 Sum_probs=67.8
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhc
Q 006057 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDM--DGFKLLELVGL 84 (663)
Q Consensus 14 glRVLIV----DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MPdm--DG~eLLe~Ir~ 84 (663)
+.+||+. |-+..-..++..+|+..||+|+... ..++.++.+.+. +||+|-+-+.|... .-.++++.++.
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~lr~ 159 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAVKEH--KPDILGLSALMTTTMGGMKEVIEALKE 159 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHH
Confidence 4588887 7778778999999999999998543 467777777764 79999998877543 22345566655
Q ss_pred cC---CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 85 EM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 85 ~~---dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
.. +++|++-...-..+ -+-..||+.|-.-.
T Consensus 160 ~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~da 192 (201)
T cd02070 160 AGLRDKVKVMVGGAPVNQE---FADEIGADGYAEDA 192 (201)
T ss_pred CCCCcCCeEEEECCcCCHH---HHHHcCCcEEECCH
Confidence 43 45665544333332 35566999887644
No 104
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=87.77 E-value=4.7 Score=35.86 Aligned_cols=90 Identities=13% Similarity=0.101 Sum_probs=56.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
+||||...+.....++..+++.|++.... .........+...-...|+||+=...-.=+-...++...+..++|+++
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~ 80 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIY 80 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEE
Confidence 58999997778889999999999998877 222222222332223579998855443333444444444567899987
Q ss_pred EecCCChHHHHHHH
Q 006057 93 LSGNGDPKLVMKGI 106 (663)
Q Consensus 93 LSA~~d~e~v~kAl 106 (663)
.-. .....+.+++
T Consensus 81 ~~~-~~~~~l~~~l 93 (97)
T PF10087_consen 81 SRS-RGVSSLERAL 93 (97)
T ss_pred ECC-CCHHHHHHHH
Confidence 643 3334454544
No 105
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=87.34 E-value=8.4 Score=38.11 Aligned_cols=84 Identities=17% Similarity=0.160 Sum_probs=56.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHhccCC-CcEEEEecCCChHHHHHHHhcCCceE
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMPDM--------DGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MPdm--------DG~eLLe~Ir~~~d-IPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
.+.+..++.+.... .+|+|.+.-..|.. .|++.++.++.... +||++..+- ..+.+.+++.+||+++
T Consensus 110 ~~~t~~e~~~a~~~---gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~v~a~GGI-~~~~i~~~~~~Ga~gv 185 (212)
T PRK00043 110 STHTLEEAAAALAA---GADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVGDIPIVAIGGI-TPENAPEVLEAGADGV 185 (212)
T ss_pred eCCCHHHHHHHhHc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCEE
Confidence 45566677666543 58999887555533 35888887765544 999888766 5678889999999998
Q ss_pred Ee-----CCCCHHHHHHHHHHH
Q 006057 114 LL-----KPVRIEELKNIWQHV 130 (663)
Q Consensus 114 Ll-----KPvs~eeL~~~~q~V 130 (663)
.. +.-++.+....++..
T Consensus 186 ~~gs~i~~~~d~~~~~~~l~~~ 207 (212)
T PRK00043 186 AVVSAITGAEDPEAAARALLAA 207 (212)
T ss_pred EEeHHhhcCCCHHHHHHHHHHH
Confidence 75 444454444444333
No 106
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=86.59 E-value=14 Score=39.34 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=74.6
Q ss_pred HHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----HHHHHHhccCCCcEEEEecCCChHHHH
Q 006057 31 ETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGF-----KLLELVGLEMDLPVIMLSGNGDPKLVM 103 (663)
Q Consensus 31 ~~lL~~~gy~V~ta--sdg~EALelLre~k~~pDLVIlDv~MPdmDG~-----eLLe~Ir~~~dIPVIILSA~~d~e~v~ 103 (663)
.+.|-+.||.|..+ .|..-|.++..-. -.++|-+--|-..|. ..++.|.+..++|||+=.+-...+.+.
T Consensus 130 ae~Lv~eGF~VlPY~~~D~v~a~rLed~G----c~aVMPlgsPIGSg~Gl~n~~~l~~i~e~~~vpVivdAGIgt~sDa~ 205 (267)
T CHL00162 130 AEFLVKKGFTVLPYINADPMLAKHLEDIG----CATVMPLGSPIGSGQGLQNLLNLQIIIENAKIPVIIDAGIGTPSEAS 205 (267)
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHcC----CeEEeeccCcccCCCCCCCHHHHHHHHHcCCCcEEEeCCcCCHHHHH
Confidence 44555679998743 4555565555433 245556666655543 456778888899999999999999999
Q ss_pred HHHhcCCceEE-----eCCCCHHHHHHHHHHHHHhhc
Q 006057 104 KGITHGACDYL-----LKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 104 kAl~aGA~DYL-----lKPvs~eeL~~~~q~Vlrr~~ 135 (663)
++++.|+++.| .|--++.++...++++++..+
T Consensus 206 ~AmElGaDgVL~nSaIakA~dP~~mA~a~~~AV~AGR 242 (267)
T CHL00162 206 QAMELGASGVLLNTAVAQAKNPEQMAKAMKLAVQAGR 242 (267)
T ss_pred HHHHcCCCEEeecceeecCCCHHHHHHHHHHHHHHHH
Confidence 99999999975 477888999999998886544
No 107
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=86.38 E-value=9.7 Score=39.00 Aligned_cols=109 Identities=16% Similarity=0.167 Sum_probs=72.7
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHh
Q 006057 13 SGLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPD-MDG-FKLLELVG 83 (663)
Q Consensus 13 ~glRVLIV----DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MPd-mDG-~eLLe~Ir 83 (663)
..-+|++. |.+..-..++..+|+..||+|+... ..++.++.+.+. +||+|.+-..|+. +.. -++++.++
T Consensus 87 ~~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~~~~--~~~~V~lS~~~~~~~~~~~~~i~~L~ 164 (213)
T cd02069 87 SKGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAAKEH--KADIIGLSGLLVPSLDEMVEVAEEMN 164 (213)
T ss_pred CCCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEccchhccHHHHHHHHHHHH
Confidence 44578877 7788888999999999999998654 477778888765 7999999888764 222 33556665
Q ss_pred cc-CCCcEEEEecCCChHHHHH---HHhcCCceEEeCCCCHHHH
Q 006057 84 LE-MDLPVIMLSGNGDPKLVMK---GITHGACDYLLKPVRIEEL 123 (663)
Q Consensus 84 ~~-~dIPVIILSA~~d~e~v~k---Al~aGA~DYLlKPvs~eeL 123 (663)
.. .+++|++-.+....+.+.+ +-..||+.|-.-....-++
T Consensus 165 ~~~~~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da~~~v~~ 208 (213)
T cd02069 165 RRGIKIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDASRALGV 208 (213)
T ss_pred hcCCCCeEEEEChhcCHHHHhhhhccccCCCceEecCHHHHHHH
Confidence 43 3566665444444333332 2346998887655444333
No 108
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=86.38 E-value=18 Score=35.31 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=78.5
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH----HH
Q 006057 13 SGLRVLAV----DDDPTCLLLLETLLRRCQYHVTT---TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLL----EL 81 (663)
Q Consensus 13 ~glRVLIV----DDD~~~r~iL~~lL~~~gy~V~t---asdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLL----e~ 81 (663)
+..||||. |-+..-...+..+|+..||+|+. ....+|+.+..-+. ..|+|.+-.. .....+++ +.
T Consensus 11 ~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA~~~--dv~vIgvSsl--~g~h~~l~~~lve~ 86 (143)
T COG2185 11 ARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAAVEE--DVDVIGVSSL--DGGHLTLVPGLVEA 86 (143)
T ss_pred CCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHHHhc--CCCEEEEEec--cchHHHHHHHHHHH
Confidence 35577765 67777788999999999999984 56788988877554 6787776432 22333444 34
Q ss_pred HhccCCCcEE-EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 82 VGLEMDLPVI-MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 82 Ir~~~dIPVI-ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
+++..-=.|+ ++-+.-..+...+..++|++.|+..-....+...-+...+.
T Consensus 87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~ 138 (143)
T COG2185 87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLG 138 (143)
T ss_pred HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHH
Confidence 4443222333 45555556667777889999999988888887776665544
No 109
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=85.57 E-value=19 Score=32.03 Aligned_cols=107 Identities=19% Similarity=0.293 Sum_probs=65.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~-~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
+||.||.--..-+..+..++.. .++++. .+....+..+.+.+. ..+. ++.| +-+.+. ..++-+|+
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~-~~~~-~~~~----------~~~ll~-~~~~D~V~ 67 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEK-YGIP-VYTD----------LEELLA-DEDVDAVI 67 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH-TTSE-EESS----------HHHHHH-HTTESEEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHH-hccc-chhH----------HHHHHH-hhcCCEEE
Confidence 5788888777667777777766 456655 444333333333322 1334 4433 112222 12333444
Q ss_pred Ee--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHhh
Q 006057 93 LS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LS--A~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr~ 134 (663)
++ .....+.+.+++++|..=|+-||+ +.+++..+++.+-+..
T Consensus 68 I~tp~~~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~~ 113 (120)
T PF01408_consen 68 IATPPSSHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEKG 113 (120)
T ss_dssp EESSGGGHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHHT
T ss_pred EecCCcchHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHhC
Confidence 43 344567899999999999999997 8899998888776544
No 110
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=85.36 E-value=9.1 Score=38.52 Aligned_cols=95 Identities=13% Similarity=0.199 Sum_probs=67.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
-+++|+.+++..++.+++++..+| |.|....+.+++++.++.....|.|+..+....+ .++-++..-.. +-|+++
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~~G~vvhLtmyga~~~~--~~~~ir~~~~~-~~p~LI 108 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKDGGIVVHLTMYGENIQD--VEPEIREAHRK-GEPLLI 108 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHhCCcEEEEEEecCCccc--hHHHHHHhhcc-CCcEEE
Confidence 379999999999999999999886 7799999999999988743346889999988866 55544422112 456655
Q ss_pred Eec-CCChHHHHHHHhcCCceEEeCC
Q 006057 93 LSG-NGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 93 LSA-~~d~e~v~kAl~aGA~DYLlKP 117 (663)
+-+ ..-+..+.+ .+||.+-+
T Consensus 109 vvGg~gvp~evye-----~aDynlgv 129 (176)
T PRK03958 109 VVGAEKVPREVYE-----LADWNVAV 129 (176)
T ss_pred EEcCCCCCHHHHh-----hCCEEecc
Confidence 544 433444433 35676643
No 111
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=85.14 E-value=18 Score=34.62 Aligned_cols=105 Identities=14% Similarity=0.048 Sum_probs=71.5
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhcc--CCCcEEEE
Q 006057 21 DDDPTCLLLLETLLRRCQYHVTT---TSQAITALKLLRENKNKFDLVISDVHMPD-MDGF-KLLELVGLE--MDLPVIML 93 (663)
Q Consensus 21 DDD~~~r~iL~~lL~~~gy~V~t---asdg~EALelLre~k~~pDLVIlDv~MPd-mDG~-eLLe~Ir~~--~dIPVIIL 93 (663)
|-+..-..++..+|+..||+|+. ....++.++...+. ++|+|.+-..|.. +..+ ++.+.+++. .++||+ +
T Consensus 10 D~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa~~~--~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~v~vi-v 86 (128)
T cd02072 10 DCHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAAIET--DADAILVSSLYGHGEIDCKGLREKCDEAGLKDILLY-V 86 (128)
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCCHHHHHHHHHHHHHCCCCCCeEE-E
Confidence 33455567899999999999984 45678888877765 7999998776643 3333 344555543 255554 4
Q ss_pred ecCC-----C-hHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 006057 94 SGNG-----D-PKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (663)
Q Consensus 94 SA~~-----d-~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q 128 (663)
.+.. + .+...++.++|++......-.++++...++
T Consensus 87 GG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 87 GGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIADLK 127 (128)
T ss_pred ECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHh
Confidence 4431 1 334567889999999998888888877654
No 112
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=84.69 E-value=12 Score=37.84 Aligned_cols=75 Identities=20% Similarity=0.274 Sum_probs=53.3
Q ss_pred CEE-EEECCHHHHHHHHHhcCCCceEEEEeCC-------CCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCC
Q 006057 39 YHV-TTTSQAITALKLLRENKNKFDLVISDVH-------MPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGA 110 (663)
Q Consensus 39 y~V-~tasdg~EALelLre~k~~pDLVIlDv~-------MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA 110 (663)
..+ ..+.+.+++...... .+|+|.+..+ ......+++++.++...++|||...+-.+.+.+.+++..||
T Consensus 124 ~~iiv~v~t~~ea~~a~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~~ipvia~GGI~~~~~~~~~l~~Ga 200 (219)
T cd04729 124 CLLMADISTLEEALNAAKL---GFDIIGTTLSGYTEETAKTEDPDFELLKELRKALGIPVIAEGRINSPEQAAKALELGA 200 (219)
T ss_pred CeEEEECCCHHHHHHHHHc---CCCEEEccCccccccccCCCCCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHCCC
Confidence 443 355677787666543 5888765321 11234578888887666899999888888899999999999
Q ss_pred ceEEeC
Q 006057 111 CDYLLK 116 (663)
Q Consensus 111 ~DYLlK 116 (663)
+..+.-
T Consensus 201 dgV~vG 206 (219)
T cd04729 201 DAVVVG 206 (219)
T ss_pred CEEEEc
Confidence 988764
No 113
>smart00426 TEA TEA domain.
Probab=84.18 E-value=0.7 Score=39.52 Aligned_cols=47 Identities=28% Similarity=0.364 Sum_probs=30.8
Q ss_pred eeeehhhhHHHHHHHHHhc---CCC--------------cchHHHHhhcCCCCCCHHHHHHhhhh
Q 006057 202 VVWSVELHRKFVAAVNQLG---IDK--------------AVPKKILDLMNVEKLTRENVASHLQK 249 (663)
Q Consensus 202 v~Wt~eLh~kFv~av~~LG---~dk--------------A~pk~Ile~m~v~~LT~~~VaSHLQk 249 (663)
-+|.++|-.-|++|+..+- -.| -+-.||....+ .--|+.+|+||+|-
T Consensus 4 ~vWp~~lE~Af~~aL~~~~~~g~~kik~~~r~k~~gRNelIs~YI~~~tG-k~Rt~KQVsShIQv 67 (68)
T smart00426 4 GVWSPDIEQAFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQV 67 (68)
T ss_pred CcCcHHHHHHHHHHHHHcCccCcccchhhhcCcccchhHHHHHHHHHHhC-Cccchhhhcchhee
Confidence 3799999999999997773 221 11223333321 23489999999984
No 114
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=82.29 E-value=14 Score=34.08 Aligned_cols=107 Identities=12% Similarity=0.110 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhc-cCCCcEEEEecCCChH
Q 006057 25 TCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDM-DGFKLLELVGL-EMDLPVIMLSGNGDPK 100 (663)
Q Consensus 25 ~~r~iL~~lL~~~gy~V~ta--sdg~EALelLre~k~~pDLVIlDv~MPdm-DG~eLLe~Ir~-~~dIPVIILSA~~d~e 100 (663)
.-...+..+|++.|++|... ...++.++.+... .+||+|.+-+..... ...++++.+|+ .++++||+-..+...
T Consensus 3 lgl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p~~~iv~GG~~~t~- 80 (127)
T cd02068 3 LGLAYLAAVLEDAGFIVAEHDVLSADDIVEDIKEL-LKPDVVGISLMTSAIYEALELAKIAKEVLPNVIVVVGGPHATF- 80 (127)
T ss_pred chHHHHHHHHHHCCCeeeecCCCCHHHHHHHHHHh-cCCCEEEEeeccccHHHHHHHHHHHHHHCCCCEEEECCcchhh-
Confidence 44567888999989886643 3455556666542 479999999865544 34556677765 456777655444332
Q ss_pred HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 101 LVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 101 ~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.....+.....||+.+--....+...++.+.++
T Consensus 81 ~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~~g 113 (127)
T cd02068 81 FPEEILEEPGVDFVVIGEGEETFLKLLEELEEG 113 (127)
T ss_pred CHHHHhcCCCCCEEEECCcHHHHHHHHHHHHcC
Confidence 222224445567888876666777777765543
No 115
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=81.07 E-value=26 Score=42.35 Aligned_cols=115 Identities=13% Similarity=0.044 Sum_probs=74.4
Q ss_pred EEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhccC
Q 006057 16 RVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MD-GFKLLELVGLEM 86 (663)
Q Consensus 16 RVLIV----DDD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPd-mD-G~eLLe~Ir~~~ 86 (663)
+|+|. |.+..-...+..+|+..||+|..- .+.+++.+...+. .+|+|++-..+.. +. .-++++.++...
T Consensus 584 kV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa~~~--~a~ivvlcs~d~~~~e~~~~l~~~Lk~~G 661 (714)
T PRK09426 584 RILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQAVEN--DVHVVGVSSLAAGHKTLVPALIEALKKLG 661 (714)
T ss_pred eEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHHHHc--CCCEEEEeccchhhHHHHHHHHHHHHhcC
Confidence 55554 344555667888889999999633 4577888877764 6887776443322 22 224556665542
Q ss_pred CCcE-EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 87 DLPV-IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 87 dIPV-IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.-.| |++.+..-.+....+.+.|+++|+..-.+..++...++..++
T Consensus 662 ~~~v~vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l~ 708 (714)
T PRK09426 662 REDIMVVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELLS 708 (714)
T ss_pred CCCcEEEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHHH
Confidence 1123 445544234444667889999999999999988888777664
No 116
>KOG3841 consensus TEF-1 and related transcription factor, TEAD family [Transcription]
Probab=79.73 E-value=6.2 Score=43.75 Aligned_cols=51 Identities=27% Similarity=0.376 Sum_probs=33.6
Q ss_pred CCceeeehhhhHHHHHHHHHh---cCCC--------------cchHHHHhhcCCCCCCHHHHHHhhhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQL---GIDK--------------AVPKKILDLMNVEKLTRENVASHLQKY 250 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~L---G~dk--------------A~pk~Ile~m~v~~LT~~~VaSHLQky 250 (663)
-..-+|+++..+.|.+|+..+ |-.| -+..||.-.. -+--||.+|.||.|-.
T Consensus 74 daegvWSpdIEqsFqEALaiyppcGrrKIilsdegkmyGRNELIarYIKlrt-gktRTrKQVSSHIQVl 141 (455)
T KOG3841|consen 74 DAEGVWSPDIEQSFQEALAIYPPCGRRKIILSDEGKMYGRNELIARYIKLRT-GKTRTRKQVSSHIQVL 141 (455)
T ss_pred ccccccChhHHHHHHHHHhhcCCCCceeEEEccCccccchHHHHHHHHHHhc-CCchhHHHHHHHHHHH
Confidence 345689999999999999766 3222 1223332221 1335999999999963
No 117
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=78.89 E-value=17 Score=39.20 Aligned_cols=85 Identities=18% Similarity=0.178 Sum_probs=61.4
Q ss_pred HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEecCCChHHHH
Q 006057 30 LETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHM-----PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVM 103 (663)
Q Consensus 30 L~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~M-----PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~ 103 (663)
+-+.|+..|..|. .+.+.++|..+... .+|.|++.-.- ....-++++..++...++|||+-.+-.+.+.+.
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~~~---GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~~iPviaaGGI~~~~~~~ 177 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRMEKA---GADAVIAEGMESGGHIGELTTMALVPQVVDAVSIPVIAAGGIADGRGMA 177 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHHHc---CCCEEEEECcccCCCCCCCcHHHHHHHHHHHhCCCEEEECCCCCHHHHH
Confidence 3345555566554 56778888766653 58999884432 223458888888766689999888888888899
Q ss_pred HHHhcCCceEEeCC
Q 006057 104 KGITHGACDYLLKP 117 (663)
Q Consensus 104 kAl~aGA~DYLlKP 117 (663)
+++..||+..++--
T Consensus 178 ~al~~GA~gV~iGt 191 (307)
T TIGR03151 178 AAFALGAEAVQMGT 191 (307)
T ss_pred HHHHcCCCEeecch
Confidence 99999999887654
No 118
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=78.22 E-value=15 Score=38.69 Aligned_cols=101 Identities=20% Similarity=0.232 Sum_probs=66.5
Q ss_pred HHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----HHHHHHhccCCCcEEEEecCCChHHHH
Q 006057 31 ETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPDMDGF-----KLLELVGLEMDLPVIMLSGNGDPKLVM 103 (663)
Q Consensus 31 ~~lL~~~gy~V~t--asdg~EALelLre~k~~pDLVIlDv~MPdmDG~-----eLLe~Ir~~~dIPVIILSA~~d~e~v~ 103 (663)
.+.|-+.||.|.. ..|..-|.++..-. -.++|-+--|-..|. ..++.|.+..++|||+=.+-.....+.
T Consensus 116 ae~Lv~eGF~VlPY~~~D~v~akrL~d~G----caavMPlgsPIGSg~Gi~n~~~l~~i~~~~~vPvIvDAGiG~pSdaa 191 (247)
T PF05690_consen 116 AEILVKEGFVVLPYCTDDPVLAKRLEDAG----CAAVMPLGSPIGSGRGIQNPYNLRIIIERADVPVIVDAGIGTPSDAA 191 (247)
T ss_dssp HHHHHHTT-EEEEEE-S-HHHHHHHHHTT-----SEBEEBSSSTTT---SSTHHHHHHHHHHGSSSBEEES---SHHHHH
T ss_pred HHHHHHCCCEEeecCCCCHHHHHHHHHCC----CCEEEecccccccCcCCCCHHHHHHHHHhcCCcEEEeCCCCCHHHHH
Confidence 4556677999873 34555565555433 234556666766654 456777766799999999999999999
Q ss_pred HHHhcCCceEEe-----CCCCHHHHHHHHHHHHHhhc
Q 006057 104 KGITHGACDYLL-----KPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 104 kAl~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr~~ 135 (663)
.|++.|++..|+ +--++-.+..+.++.++..+
T Consensus 192 ~AMElG~daVLvNTAiA~A~dPv~MA~Af~~AV~AGR 228 (247)
T PF05690_consen 192 QAMELGADAVLVNTAIAKAKDPVAMARAFKLAVEAGR 228 (247)
T ss_dssp HHHHTT-SEEEESHHHHTSSSHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCceeehhhHHhccCCHHHHHHHHHHHHHHHH
Confidence 999999999987 45778888888888776443
No 119
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=78.19 E-value=21 Score=35.96 Aligned_cols=97 Identities=15% Similarity=0.089 Sum_probs=63.2
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC-CH-HHHHHHHhcc
Q 006057 15 LRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDM-DG-FKLLELVGLE 85 (663)
Q Consensus 15 lRVLIV----DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MPdm-DG-~eLLe~Ir~~ 85 (663)
-+|++. |.+..-..++..+|+..||+|+... ..++.++.+.+. +||+|.+-+.|... .. .++++.+++.
T Consensus 85 ~~vv~~t~~gd~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~~~~--~pd~v~lS~~~~~~~~~~~~~i~~l~~~ 162 (197)
T TIGR02370 85 GKVVCGVAEGDVHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKVKKE--KPLMLTGSALMTTTMYGQKDINDKLKEE 162 (197)
T ss_pred CeEEEEeCCCchhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEccccccCHHHHHHHHHHHHHc
Confidence 366554 4556677889999999999998543 567777888764 79999998877542 23 2345566544
Q ss_pred --C-CCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 86 --M-DLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 86 --~-dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+ +++|+ +.+..-... -+.+.||+.|-.-
T Consensus 163 ~~~~~v~i~-vGG~~~~~~--~~~~~gad~~~~d 193 (197)
T TIGR02370 163 GYRDSVKFM-VGGAPVTQD--WADKIGADVYGEN 193 (197)
T ss_pred CCCCCCEEE-EEChhcCHH--HHHHhCCcEEeCC
Confidence 2 34544 554433322 3456799998654
No 120
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=76.84 E-value=28 Score=36.61 Aligned_cols=80 Identities=14% Similarity=0.153 Sum_probs=58.9
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC-HHHHH
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-IEELK 124 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs-~eeL~ 124 (663)
..+.+++... .||.|++|++-..+|--++...++. ...++.|+=....+...+.++++.||.+++..=++ .++.+
T Consensus 23 p~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRvp~~~~~~i~r~LD~Ga~gIivP~v~taeea~ 100 (249)
T TIGR03239 23 PITTEVLGLA--GFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRPPWNEPVIIKRLLDIGFYNFLIPFVESAEEAE 100 (249)
T ss_pred cHHHHHHHhc--CCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHHHhcCCCCEEEecCcCCHHHHH
Confidence 3455555543 6999999999988888777776642 34566666777788899999999999999877655 56666
Q ss_pred HHHHH
Q 006057 125 NIWQH 129 (663)
Q Consensus 125 ~~~q~ 129 (663)
.+++.
T Consensus 101 ~~v~a 105 (249)
T TIGR03239 101 RAVAA 105 (249)
T ss_pred HHHHH
Confidence 55544
No 121
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=76.44 E-value=35 Score=37.50 Aligned_cols=98 Identities=12% Similarity=0.125 Sum_probs=65.0
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCC--H
Q 006057 16 RVLAVDD----DPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----------DMD--G 75 (663)
Q Consensus 16 RVLIVDD----D~~~r~iL~~lL~~~g-y~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----------dmD--G 75 (663)
.+++||- .....+.++.+-+.+. ..|. .+.+.++|..++.. .+|+|++-+.-. +.. +
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~a---Gad~i~vg~~~G~~~~t~~~~g~~~~~w~ 189 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 189 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHHc---CcCEEEECCCCCcccccccccCCCCCccH
Confidence 6788863 2334444555444443 3333 47788999887764 588876442111 112 4
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+..++.+.....+|||.-.+-.....+.+|+..||+.+..-
T Consensus 190 l~ai~~~~~~~~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 190 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 55566665556799999989999999999999999988765
No 122
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=75.76 E-value=27 Score=36.78 Aligned_cols=99 Identities=13% Similarity=0.141 Sum_probs=66.6
Q ss_pred HHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCChHHHHH
Q 006057 29 LLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 29 iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~dIPVIILSA~~d~e~v~k 104 (663)
.|++.|..-...+. .......+.+++... .||.|++|++-...|--++...++. ...++.|+=....+...+.+
T Consensus 9 ~lk~~l~~g~~~~g~~~~~~sp~~~e~~a~~--G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRvp~~~~~~i~r 86 (256)
T PRK10558 9 KFKAALAAKQVQIGCWSALANPITTEVLGLA--GFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRVPTNEPVIIKR 86 (256)
T ss_pred HHHHHHHcCCceEEEEEcCCCcHHHHHHHhc--CCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEECCCCCHHHHHH
Confidence 45666665332222 222233455555543 6999999999988888777776643 34566677777788899999
Q ss_pred HHhcCCceEEeCCCC-HHHHHHHHHH
Q 006057 105 GITHGACDYLLKPVR-IEELKNIWQH 129 (663)
Q Consensus 105 Al~aGA~DYLlKPvs-~eeL~~~~q~ 129 (663)
+++.||.+++..=++ .++.+.+++.
T Consensus 87 ~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 87 LLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred HhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 999999999876654 5666655544
No 123
>PLN02591 tryptophan synthase
Probab=75.19 E-value=7.9 Score=40.78 Aligned_cols=59 Identities=14% Similarity=0.266 Sum_probs=46.7
Q ss_pred CHHHHHHHHhccCCCcEEEEecC------CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 74 DGFKLLELVGLEMDLPVIMLSGN------GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 74 DG~eLLe~Ir~~~dIPVIILSA~------~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
+.|++++.+|...++|+|+|+=+ .....+.+|.++|+++.|+-.+..+|.......+.+
T Consensus 65 ~~~~~~~~~r~~~~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQLSCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 35777787876678999988743 344568899999999999999999988877766644
No 124
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=74.93 E-value=24 Score=40.76 Aligned_cols=34 Identities=24% Similarity=0.238 Sum_probs=27.7
Q ss_pred ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 84 LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 84 ~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
...++|||.=.+......+.+|+.+||+..++--
T Consensus 341 ~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 341 RERGVPCIADGGIKNSGDICKALALGADCVMLGS 374 (495)
T ss_pred hhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECc
Confidence 3456898877788888999999999999887654
No 125
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=74.60 E-value=33 Score=36.52 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=65.3
Q ss_pred HHHHHHHhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCChHHHHH
Q 006057 29 LLETLLRRCQYHV--TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 29 iL~~lL~~~gy~V--~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~dIPVIILSA~~d~e~v~k 104 (663)
.|++.|..-...+ ........+.+++... .||.|++|++-...|--++...++. ...++.|+-....+...+.+
T Consensus 8 ~lk~~L~~G~~~~G~~~~~~sp~~~E~~a~~--GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRvp~~~~~~i~r 85 (267)
T PRK10128 8 PFKEGLRKGEVQIGLWLSSTTSYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_pred HHHHHHHcCCceEEEEecCCCcHHHHHHHHc--CCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEECCCCCHHHHHH
Confidence 3556665532222 1222233445555543 5999999999988887777665542 34555666667778889999
Q ss_pred HHhcCCceEEeCCCC-HHHHHHHHHH
Q 006057 105 GITHGACDYLLKPVR-IEELKNIWQH 129 (663)
Q Consensus 105 Al~aGA~DYLlKPvs-~eeL~~~~q~ 129 (663)
+++.||.+.+..=++ .++.+.+++.
T Consensus 86 ~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 86 VLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred HhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 999999999998765 4666555544
No 126
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=73.86 E-value=13 Score=38.65 Aligned_cols=58 Identities=9% Similarity=0.207 Sum_probs=43.2
Q ss_pred HHHHHHHHhccCCCcEEEEecCCC------hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 75 GFKLLELVGLEMDLPVIMLSGNGD------PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~~d------~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
++++++.++...++|+++|+-... ...+.++.++|+++.+.-.+..+++...++.+.+
T Consensus 64 ~~~~~~~vr~~~~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 64 VLELVKEIRKKNTIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHHHHHHhhcCCCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 455666666656889988877543 6678889999999999988878877666665543
No 127
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=73.66 E-value=53 Score=36.19 Aligned_cols=96 Identities=15% Similarity=0.176 Sum_probs=67.3
Q ss_pred hCCCEE-E-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----HHHHHHHhccCCCcEEEEecCCChHHHHHHHhc
Q 006057 36 RCQYHV-T-TTSQAITALKLLRENKNKFDLVISDVHMPDMDG-----FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH 108 (663)
Q Consensus 36 ~~gy~V-~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG-----~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~a 108 (663)
+.|+.| . ++.+...|.++..- .+ ++++-+--|-..| -+.++.+.+.+++|||+=.+-...+.+.+|++.
T Consensus 195 ~~Gf~v~~yc~~d~~~a~~l~~~---g~-~avmPl~~pIGsg~gv~~p~~i~~~~e~~~vpVivdAGIg~~sda~~Amel 270 (326)
T PRK11840 195 KEGFQVMVYCSDDPIAAKRLEDA---GA-VAVMPLGAPIGSGLGIQNPYTIRLIVEGATVPVLVDAGVGTASDAAVAMEL 270 (326)
T ss_pred HCCCEEEEEeCCCHHHHHHHHhc---CC-EEEeeccccccCCCCCCCHHHHHHHHHcCCCcEEEeCCCCCHHHHHHHHHc
Confidence 448988 4 44566666665543 34 5554433332232 355666666688999999999999999999999
Q ss_pred CCceEEe-----CCCCHHHHHHHHHHHHHhhc
Q 006057 109 GACDYLL-----KPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 109 GA~DYLl-----KPvs~eeL~~~~q~Vlrr~~ 135 (663)
||++.|+ |--++-.+..+.++++...+
T Consensus 271 GadgVL~nSaIa~a~dPv~Ma~A~~~av~aGr 302 (326)
T PRK11840 271 GCDGVLMNTAIAEAKNPVLMARAMKLAVEAGR 302 (326)
T ss_pred CCCEEEEcceeccCCCHHHHHHHHHHHHHHHH
Confidence 9999854 66788888888888876543
No 128
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=73.60 E-value=26 Score=40.11 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=62.7
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHHhC-CCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC------------C
Q 006057 13 SGLRVLAVDDD----PTCLLLLETLLRRC-QYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPD------------M 73 (663)
Q Consensus 13 ~glRVLIVDDD----~~~r~iL~~lL~~~-gy~--V~tasdg~EALelLre~k~~pDLVIlDv~MPd------------m 73 (663)
.+.+|++||.. ......++.+-.+. +.. +..+.+.++|..++.. .+|.|.+-+ -|+ .
T Consensus 239 agvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~g~v~t~e~a~~l~~a---Gad~i~vg~-g~gs~~~~r~~~~~g~ 314 (486)
T PRK05567 239 AGVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIAGNVATAEAARALIEA---GADAVKVGI-GPGSICTTRIVAGVGV 314 (486)
T ss_pred hCCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEEeccCCHHHHHHHHHc---CCCEEEECC-CCCccccceeecCCCc
Confidence 36778888853 22334444444443 333 3466788888888764 478776532 121 1
Q ss_pred CHHHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 74 DGFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 74 DG~eLLe~Ir---~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.-++++..++ ....+|||.=.+-.....+.+|+.+||+..++-
T Consensus 315 p~~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 315 PQITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred CHHHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 2244443332 234689888778888999999999999987654
No 129
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=73.56 E-value=24 Score=37.23 Aligned_cols=99 Identities=21% Similarity=0.239 Sum_probs=70.3
Q ss_pred HHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-----HHHHHHhccCCCcEEEEecCCChHHHH
Q 006057 31 ETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGF-----KLLELVGLEMDLPVIMLSGNGDPKLVM 103 (663)
Q Consensus 31 ~~lL~~~gy~V~ta--sdg~EALelLre~k~~pDLVIlDv~MPdmDG~-----eLLe~Ir~~~dIPVIILSA~~d~e~v~ 103 (663)
.+.|-+.||.|..+ .|..-|-++..-. -.++|-+--|-.+|. ..++.|.++.++|||+=.+-.....+.
T Consensus 123 ae~Lv~eGF~VlPY~~dD~v~arrLee~G----caavMPl~aPIGSg~G~~n~~~l~iiie~a~VPviVDAGiG~pSdAa 198 (262)
T COG2022 123 AEQLVKEGFVVLPYTTDDPVLARRLEEAG----CAAVMPLGAPIGSGLGLQNPYNLEIIIEEADVPVIVDAGIGTPSDAA 198 (262)
T ss_pred HHHHHhCCCEEeeccCCCHHHHHHHHhcC----ceEeccccccccCCcCcCCHHHHHHHHHhCCCCEEEeCCCCChhHHH
Confidence 45666779998744 3444454444322 356667777766664 356777777899999999999999999
Q ss_pred HHHhcCCceEEeC-----CCCHHHHHHHHHHHHHh
Q 006057 104 KGITHGACDYLLK-----PVRIEELKNIWQHVVRR 133 (663)
Q Consensus 104 kAl~aGA~DYLlK-----Pvs~eeL~~~~q~Vlrr 133 (663)
.+++.|++..|+- --++-.+..+..+++..
T Consensus 199 ~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~Av~A 233 (262)
T COG2022 199 QAMELGADAVLLNTAIARAKDPVAMARAFALAVEA 233 (262)
T ss_pred HHHhcccceeehhhHhhccCChHHHHHHHHHHHHH
Confidence 9999999999875 35566666677666643
No 130
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=73.43 E-value=25 Score=33.81 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=49.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMPD--------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MPd--------mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.+.+..++.+.... .+|.|++.-..|. ..+++.++.++...++||++..+-. .+.+.+++.+|++++.
T Consensus 101 ~~~t~~~~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~a~GGi~-~~~i~~~~~~Ga~~i~ 176 (196)
T cd00564 101 STHSLEEALRAEEL---GADYVGFGPVFPTPTKPGAGPPLGLELLREIAELVEIPVVAIGGIT-PENAAEVLAAGADGVA 176 (196)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCCEEE
Confidence 34556666665543 5899988654442 3467888877666789999887764 5788899999999875
Q ss_pred eC
Q 006057 115 LK 116 (663)
Q Consensus 115 lK 116 (663)
.-
T Consensus 177 ~g 178 (196)
T cd00564 177 VI 178 (196)
T ss_pred Ee
Confidence 54
No 131
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=73.42 E-value=46 Score=33.55 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=53.4
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHH
Q 006057 34 LRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKG 105 (663)
Q Consensus 34 L~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPd-------mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kA 105 (663)
+++.+..+. .+.+.+++..+.. . .+|.|+++-.-.+ ...+++++.++...++||++.-+-...+.+.++
T Consensus 98 ~~~~~i~~i~~v~~~~~~~~~~~-~--gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi~~GGI~~~~~v~~~ 174 (236)
T cd04730 98 LKAAGIKVIPTVTSVEEARKAEA-A--GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVIAAGGIADGRGIAAA 174 (236)
T ss_pred HHHcCCEEEEeCCCHHHHHHHHH-c--CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEEEECCCCCHHHHHHH
Confidence 333444444 3445555554443 2 4788887543211 245778888876668999998887777889999
Q ss_pred HhcCCceEEeC
Q 006057 106 ITHGACDYLLK 116 (663)
Q Consensus 106 l~aGA~DYLlK 116 (663)
+..||++..+-
T Consensus 175 l~~GadgV~vg 185 (236)
T cd04730 175 LALGADGVQMG 185 (236)
T ss_pred HHcCCcEEEEc
Confidence 99999987665
No 132
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=73.17 E-value=41 Score=38.97 Aligned_cols=100 Identities=16% Similarity=0.244 Sum_probs=66.5
Q ss_pred CcEEEEEeCCH----HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCC--------------CCC
Q 006057 14 GLRVLAVDDDP----TCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVH--------------MPD 72 (663)
Q Consensus 14 glRVLIVDDD~----~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~--------------MPd 72 (663)
|.-|++||--. ...+.++++=+.+ +..|. .+.+.++|..++.. ..|.|.+-++ .|.
T Consensus 260 g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t~e~a~~a~~a---GaD~i~vg~g~G~~~~t~~~~~~g~~~ 336 (505)
T PLN02274 260 GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVTMYQAQNLIQA---GVDGLRVGMGSGSICTTQEVCAVGRGQ 336 (505)
T ss_pred CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccCccccccCCCc
Confidence 56688887432 2223444443333 24443 47788888888864 5888876431 123
Q ss_pred CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 73 MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 73 mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
..-+..+..+.....+|||.-.+-.....+.+|+.+||+...+-
T Consensus 337 ~~~i~~~~~~~~~~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 337 ATAVYKVASIAAQHGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred ccHHHHHHHHHHhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 33455566665556799999999999999999999999987664
No 133
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=72.79 E-value=11 Score=39.73 Aligned_cols=58 Identities=12% Similarity=0.284 Sum_probs=45.2
Q ss_pred HHHHHHHHh-ccCCCcEEEEecC------CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 75 GFKLLELVG-LEMDLPVIMLSGN------GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 75 G~eLLe~Ir-~~~dIPVIILSA~------~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.+++++.++ ...++|+|+|+=+ .....+.+|.++|+++.|+-.+.+++....+..+.+
T Consensus 76 ~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 76 VFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 466777777 5578999988833 445678899999999999999999988877766543
No 134
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=71.83 E-value=16 Score=36.40 Aligned_cols=67 Identities=24% Similarity=0.350 Sum_probs=46.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH---HHHHHHHh
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG---FKLLELVG 83 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy---~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG---~eLLe~Ir 83 (663)
-+|..||-++.....+++-++.++. ..+...+...++..+......+|+|++|= |-..+ .++++.+.
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflDP--PY~~~~~~~~~l~~l~ 138 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLDP--PYAKGLYYEELLELLA 138 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE----STTSCHHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEECC--CcccchHHHHHHHHHH
Confidence 4899999999999999999998873 24456788888876644345899999993 54443 34666664
No 135
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=71.49 E-value=12 Score=38.05 Aligned_cols=77 Identities=19% Similarity=0.262 Sum_probs=51.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCH--HHHHHHHhccCCCc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH--MPDMDG--FKLLELVGLEMDLP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~--MPdmDG--~eLLe~Ir~~~dIP 89 (663)
.++||+||....+---|..+|+..|++|+...+....+..++. ..||.|++-=- -|..-| .+++++. ...+|
T Consensus 1 ~~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~~~--~~pd~iviSPGPG~P~d~G~~~~~i~~~--~~~~P 76 (191)
T COG0512 1 MMMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELIEA--LKPDAIVISPGPGTPKDAGISLELIRRF--AGRIP 76 (191)
T ss_pred CceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHHhh--cCCCEEEEcCCCCChHHcchHHHHHHHh--cCCCC
Confidence 3689999999999999999999999888877655333334443 26899988532 233222 3333333 45689
Q ss_pred EEEEe
Q 006057 90 VIMLS 94 (663)
Q Consensus 90 VIILS 94 (663)
|+-+.
T Consensus 77 iLGVC 81 (191)
T COG0512 77 ILGVC 81 (191)
T ss_pred EEEEC
Confidence 88664
No 136
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=71.33 E-value=46 Score=33.69 Aligned_cols=68 Identities=18% Similarity=0.249 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 46 QAITALKLLRENKNKFD-LVISDVHMPDM-DG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 46 dg~EALelLre~k~~pD-LVIlDv~MPdm-DG--~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+..+..+.+.+. .++ +++.|+.--++ .| +++++.++...++|||+-.+-.+.+.+.+++..||++.++
T Consensus 146 ~~~~~~~~~~~~--g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 146 SLEELAKRLEEL--GLEGIIYTDISRDGTLSGPNFELTKELVKAVNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 334455555443 466 77788754322 12 6778878776789999888888999999999999999875
No 137
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=71.28 E-value=45 Score=38.29 Aligned_cols=108 Identities=13% Similarity=0.095 Sum_probs=70.8
Q ss_pred CHHHHHHHHHHHHhCC-CEEEEEC------CHHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHhc-cCCCcEEEE
Q 006057 23 DPTCLLLLETLLRRCQ-YHVTTTS------QAITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 23 D~~~r~iL~~lL~~~g-y~V~tas------dg~EALelLre~k~~pDLVIlDv~MPdmD-G~eLLe~Ir~-~~dIPVIIL 93 (663)
.|.-...|..+|+..| ++|.... +.++..+.+++. .||+|.+-...+... ..++++.+++ .++++||+=
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l~~~--~pdvVgis~~t~~~~~a~~~~~~~k~~~P~~~iV~G 98 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERLRAH--CPDLVLITAITPAIYIACETLKFARERLPNAIIVLG 98 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHHHhc--CcCEEEEecCcccHHHHHHHHHHHHHHCCCCEEEEc
Confidence 4677888999999999 6776543 223344555543 799999987665443 3456666664 467777765
Q ss_pred ecCCChHHHHHHHh-cCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 94 SGNGDPKLVMKGIT-HGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 94 SA~~d~e~v~kAl~-aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
..+... ...+++. +...||++.--..+.+...++.+..+
T Consensus 99 G~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~g 138 (497)
T TIGR02026 99 GIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALENH 138 (497)
T ss_pred CCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHcC
Confidence 444432 2334443 45678999988888888888876543
No 138
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=71.19 E-value=12 Score=39.80 Aligned_cols=58 Identities=17% Similarity=0.194 Sum_probs=45.3
Q ss_pred HHHHHHHHhccCCCcEEEEecC------CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 75 GFKLLELVGLEMDLPVIMLSGN------GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~------~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.|++++.+|....+|+|+|+=+ .....+.+|.++|+++.|+-.+..+|....++.+.+
T Consensus 79 ~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~ 142 (263)
T CHL00200 79 ILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNL 142 (263)
T ss_pred HHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHH
Confidence 3667777776678999888754 445678999999999999999999887766665543
No 139
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=71.09 E-value=18 Score=38.86 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=58.1
Q ss_pred EEEEeCCHHHHH---HHHHHH----HhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006057 17 VLAVDDDPTCLL---LLETLL----RRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD 87 (663)
Q Consensus 17 VLIVDDD~~~r~---iL~~lL----~~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~d 87 (663)
|||=|+|-.... .++..+ +... ...+.+.+.++|.+.+.. .+|+|++| +|+..+-.+.++.++....
T Consensus 159 ilikdnHi~~~g~~~~i~~av~~~r~~~~~~kIeVEv~tleea~ea~~~---GaDiI~lD-n~~~e~l~~~v~~l~~~~~ 234 (277)
T TIGR01334 159 LLVFANHRTFLNDNFDWGGAIGRLKQTAPERKITVEADTIEQALTVLQA---SPDILQLD-KFTPQQLHHLHERLKFFDH 234 (277)
T ss_pred heehHHHHHHhCCcccHHHHHHHHHHhCCCCCEEEECCCHHHHHHHHHc---CcCEEEEC-CCCHHHHHHHHHHHhccCC
Confidence 666666544332 233333 2221 234577899999998864 58999999 3433333344444442222
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
-.+|-.++--..+.+......|++-+.
T Consensus 235 ~~~leasGGI~~~ni~~ya~~GvD~is 261 (277)
T TIGR01334 235 IPTLAAAGGINPENIADYIEAGIDLFI 261 (277)
T ss_pred CEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 335667888888889888889987643
No 140
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=70.90 E-value=51 Score=34.91 Aligned_cols=60 Identities=12% Similarity=0.145 Sum_probs=46.2
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCce------EEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD------YLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 77 eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~D------YLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+.+..+++..++|||....-.+.+.+.+++..||+. ++.+|.-..+++.-+..++....+
T Consensus 224 ~~v~~i~~~~~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 224 RMVYDVYKMVDIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHHHHhcCCCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHHHHcCC
Confidence 556666666679999999999999999999999876 577886667777777766665543
No 141
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=70.71 E-value=81 Score=33.25 Aligned_cols=86 Identities=19% Similarity=0.068 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHh-ccC-CCcEEEEecCCCh
Q 006057 26 CLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDV---HMPDMDGFKLLELVG-LEM-DLPVIMLSGNGDP 99 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv---~MPdmDG~eLLe~Ir-~~~-dIPVIILSA~~d~ 99 (663)
..+.+-......|..+. .+.+.+|+.+.+.. .+|+|-+.- ..-..| ++....+. ..+ ..++|..++-...
T Consensus 148 ~l~~li~~a~~lGl~~lvevh~~~E~~~A~~~---gadiIgin~rdl~~~~~d-~~~~~~l~~~~p~~~~vIaegGI~t~ 223 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLVEVHDEEELERALKL---GAPLIGINNRNLKTFEVD-LETTERLAPLIPSDRLVVSESGIFTP 223 (260)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEECCCCcccccCC-HHHHHHHHHhCCCCCEEEEEeCCCCH
Confidence 34444444455677654 67788888666543 578876531 111223 55555443 333 3689999999999
Q ss_pred HHHHHHHhcCCceEEe
Q 006057 100 KLVMKGITHGACDYLL 115 (663)
Q Consensus 100 e~v~kAl~aGA~DYLl 115 (663)
+.+.+++.+||+.+++
T Consensus 224 ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 224 EDLKRLAKAGADAVLV 239 (260)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999999754
No 142
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=70.27 E-value=29 Score=35.35 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=50.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHH
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLRENK--NKFDLVISDVHMPDMDGFKLLE 80 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy--~V~-tasdg~EALelLre~k--~~pDLVIlDv~MPdmDG~eLLe 80 (663)
..|.+-+|.-||-++...+..+.++++.|+ .|. ...++.+.+..+.... ..||+|++|..= .+-.+.++
T Consensus 66 ~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~VFiDa~K--~~y~~y~~ 139 (205)
T PF01596_consen 66 ALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDFVFIDADK--RNYLEYFE 139 (205)
T ss_dssp TSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEEEEEESTG--GGHHHHHH
T ss_pred hhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeEEEEcccc--cchhhHHH
Confidence 346667999999999999999999999886 343 5688888888776532 369999999843 33444444
No 143
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=69.91 E-value=48 Score=37.50 Aligned_cols=101 Identities=15% Similarity=0.166 Sum_probs=62.0
Q ss_pred CCcEEEEEeC----CHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCC-----------CC
Q 006057 13 SGLRVLAVDD----DPTCLLLLETLLRRC-QYHV--TTTSQAITALKLLRENKNKFDLVISDVHMPD-----------MD 74 (663)
Q Consensus 13 ~glRVLIVDD----D~~~r~iL~~lL~~~-gy~V--~tasdg~EALelLre~k~~pDLVIlDv~MPd-----------mD 74 (663)
+|.-|++||- .....+.++.+=+.+ +..| --+.+.++|..++.. .+|.|.+-+.-.. ..
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~a---GaD~I~vG~g~Gs~c~tr~~~g~g~p 240 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISV---GADCLKVGIGPGSICTTRIVAGVGVP 240 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHc---CCCEEEECCCCCcCCcceeecCCCCC
Confidence 3667888774 223333344333333 2223 247788888888764 4788876431110 01
Q ss_pred HHHHH---HHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 75 GFKLL---ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 75 G~eLL---e~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
-+.++ ..+.....+|||+=.+-.....+.+|+.+||+..++-
T Consensus 241 ~ltai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 241 QITAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 23333 3333345799998888889999999999999987654
No 144
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=69.02 E-value=31 Score=37.20 Aligned_cols=90 Identities=17% Similarity=0.126 Sum_probs=63.6
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCC--C---------------------------------CCCCHHHHHHHHhcc
Q 006057 41 VTTTSQAITALKLLRENKNKFDLVISDVH--M---------------------------------PDMDGFKLLELVGLE 85 (663)
Q Consensus 41 V~tasdg~EALelLre~k~~pDLVIlDv~--M---------------------------------PdmDG~eLLe~Ir~~ 85 (663)
+.-|.+.+||++..+. .+|+|=+=+. . ....++++++.+.+.
T Consensus 116 MAD~stleEal~a~~~---Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~ 192 (283)
T cd04727 116 VCGARNLGEALRRISE---GAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKL 192 (283)
T ss_pred EccCCCHHHHHHHHHC---CCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHh
Confidence 3356788889888875 4788766541 1 123578888888776
Q ss_pred CCCcEE--EEecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 006057 86 MDLPVI--MLSGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 86 ~dIPVI--ILSA~~d~e~v~kAl~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr 133 (663)
..+||| ...+-..++.+.++++.||+.+++ +.-++.+....+...+.+
T Consensus 193 ~~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP~~~tk~f~~ai~~ 247 (283)
T cd04727 193 GRLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENPEKRARAIVEAVTH 247 (283)
T ss_pred cCCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCHHHHHHHHHHHHHh
Confidence 779997 666666889999999999999854 334566666666555544
No 145
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=68.87 E-value=25 Score=38.03 Aligned_cols=94 Identities=14% Similarity=0.034 Sum_probs=56.7
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 17 VLAVDDDPTCLLLLETLLR----RCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~----~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
|||=|.+-...-.+...++ ... ...+.+.+.++|.+.+.. .+|+|++| +|.-.+--+.++.++....-..
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~---gaDiI~LD-nm~~e~vk~av~~~~~~~~~v~ 248 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAE---GAELVLLD-NFPVWQTQEAVQRRDARAPTVL 248 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHc---CCCEEEeC-CCCHHHHHHHHHHHhccCCCEE
Confidence 6666655433323333333 332 245578899999999864 58999999 3331111222233332333345
Q ss_pred EEEecCCChHHHHHHHhcCCceEE
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYL 114 (663)
|..|+.-..+.+....+.|++.+-
T Consensus 249 ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 249 LESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 677888888899998899987653
No 146
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=68.78 E-value=76 Score=32.16 Aligned_cols=66 Identities=18% Similarity=0.270 Sum_probs=45.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 61 pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.|++|+--...+.-|+.+++.+. ..+|||. +.. ....+.+..|..+++.++-+.++|..++..++.
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a--~G~Pvi~-~~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALA--AGVPVIA-SDI---GGMAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHH--CCCCEEE-CCC---CCHHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 46766543323445666777664 4588875 322 234556677888999999999999999999886
No 147
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=68.78 E-value=53 Score=35.76 Aligned_cols=98 Identities=19% Similarity=0.255 Sum_probs=58.3
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC------------CCC
Q 006057 14 GLRVLAVDD----DPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVHMP------------DMD 74 (663)
Q Consensus 14 glRVLIVDD----D~~~r~iL~~lL~~~g-y~V~--tasdg~EALelLre~k~~pDLVIlDv~MP------------dmD 74 (663)
+.++++||- .+...+.++.+-+... ..|. .+.+.+.|..++.. ..|.|.+.+ -| +..
T Consensus 106 gv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~a---GaD~I~vg~-g~G~~~~t~~~~g~g~p 181 (325)
T cd00381 106 GVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDA---GADGVKVGI-GPGSICTTRIVTGVGVP 181 (325)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhc---CCCEEEECC-CCCcCcccceeCCCCCC
Confidence 567777763 2333444444433332 3443 45677888777653 578887632 11 111
Q ss_pred HHHHHHHH---hccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 75 GFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 75 G~eLLe~I---r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
-+.++..+ .....+|||.--+-.....+.+|+.+||+...+
T Consensus 182 ~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 182 QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 23333322 223468998766777888999999999998765
No 148
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=67.99 E-value=48 Score=35.62 Aligned_cols=93 Identities=19% Similarity=0.165 Sum_probs=60.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhC----C--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC--CC
Q 006057 17 VLAVDDDPTCLLLLETLLRRC----Q--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM--DL 88 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~----g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~--dI 88 (663)
|||-|++-... .+...+... . ...+.+.+.++|.+.+.. .+|+|++|-..|+ +--++.+.++... .-
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~a---gaDiI~LDn~~~e-~l~~~v~~l~~~~~~~~ 231 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAKA---GADIIMLDNMTPE-EIREVIEALKREGLRER 231 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CcCEEEECCCCHH-HHHHHHHHHHhcCcCCC
Confidence 88888886554 566655432 1 134578899999999874 5899999975443 1122223333221 23
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEE
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
..|..|+.-..+.+.+..+.|++.+-
T Consensus 232 ~~leaSGGI~~~ni~~yA~tGvD~Is 257 (278)
T PRK08385 232 VKIEVSGGITPENIEEYAKLDVDVIS 257 (278)
T ss_pred EEEEEECCCCHHHHHHHHHcCCCEEE
Confidence 45667888888899999999988754
No 149
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=67.75 E-value=44 Score=38.70 Aligned_cols=66 Identities=11% Similarity=0.036 Sum_probs=33.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHH-hccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 60 KFDLVISDVHMPDMDGFKLLELV-GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eLLe~I-r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
+.|.|++-+.-.+.+- .++..+ +..++++||.... +.+......+.||+..+ -| .+++.+.+.+.+
T Consensus 481 ~a~~viv~~~~~~~~~-~iv~~~~~~~~~~~iiar~~--~~~~~~~l~~~Gad~vv-~p--~~~~a~~i~~~l 547 (558)
T PRK10669 481 CARWLLLTIPNGYEAG-EIVASAREKRPDIEIIARAH--YDDEVAYITERGANQVV-MG--EREIARTMLELL 547 (558)
T ss_pred ccCEEEEEcCChHHHH-HHHHHHHHHCCCCeEEEEEC--CHHHHHHHHHcCCCEEE-Ch--HHHHHHHHHHHh
Confidence 4566655442222221 222323 3456778887654 34455556678988665 33 244444444444
No 150
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=67.37 E-value=63 Score=33.85 Aligned_cols=82 Identities=17% Similarity=0.138 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCChHHHHHHHhcCCceEEe-CCCCHHHH
Q 006057 47 AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMKGITHGACDYLL-KPVRIEEL 123 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl-KPvs~eeL 123 (663)
.....+.+... .+|.|++|++-...+--++...++. ...+.+|+=....+...+.+++..||++.+. |--+.+++
T Consensus 22 ~p~~~e~~~~~--g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a 99 (249)
T TIGR02311 22 DPYAAEICAGA--GFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRPAIGDPVLIKQLLDIGAQTLLVPMIETAEQA 99 (249)
T ss_pred CcHHHHHHHhc--CCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEECCCCCHHHHHHHhCCCCCEEEecCcCCHHHH
Confidence 34455555543 6999999998877777777776653 2345666666667778899999999998765 44667887
Q ss_pred HHHHHHH
Q 006057 124 KNIWQHV 130 (663)
Q Consensus 124 ~~~~q~V 130 (663)
+.+++.+
T Consensus 100 ~~~v~~~ 106 (249)
T TIGR02311 100 EAAVAAT 106 (249)
T ss_pred HHHHHHc
Confidence 7766654
No 151
>PF09936 Methyltrn_RNA_4: SAM-dependent RNA methyltransferase; InterPro: IPR019230 This entry contains proteins that have no known function. They are found as separate proteins and as a C-terminal domain to tRNA (guanine-N(1)-)-methyltransferases to which they are structurally related. ; PDB: 3DCM_X.
Probab=67.32 E-value=41 Score=34.21 Aligned_cols=99 Identities=27% Similarity=0.358 Sum_probs=54.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--C----C---------EEEEECCHHHHHHHHHh-cCCCceEEEEeCC-CCCCCHHHH
Q 006057 16 RVLAVDDDPTCLLLLETLLRRC--Q----Y---------HVTTTSQAITALKLLRE-NKNKFDLVISDVH-MPDMDGFKL 78 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~--g----y---------~V~tasdg~EALelLre-~k~~pDLVIlDv~-MPdmDG~eL 78 (663)
+..||-.-+.-++.++++|.-+ | | .|..+.+.++|++.+.+ ...+|-+|-.|.. -|..-.++-
T Consensus 44 ~yyiVtPl~~Q~~l~~ril~hW~~G~G~~yNp~R~eAl~~v~~~~sle~a~~~I~~~~G~~P~~v~TsAr~~~~~is~~~ 123 (185)
T PF09936_consen 44 GYYIVTPLEAQRELAERILGHWQEGYGAEYNPDRKEALSLVRVVDSLEEAIEDIEEEEGKRPLLVATSARKYPNTISYAE 123 (185)
T ss_dssp EEEEE---HHHHHHHHHHHHHHHTSGGGGT-SSSHHHHTTEEEESSHHHHHHHHHHHHSS--EEEE--SS--SS-B-HHH
T ss_pred CEEEecchHHHHHHHHHHHHhcccCCCcCcCcCHHHHHhHhccHhhHHHHHHHHHHHhCCCCEEEEecCcCCCCCcCHHH
Confidence 5678888888888888888643 2 2 27789999999998876 3347899999998 355556666
Q ss_pred HHHHhccCCCcEEEE--ecCCChHHHHHHHhcCCceEEeCCCC
Q 006057 79 LELVGLEMDLPVIML--SGNGDPKLVMKGITHGACDYLLKPVR 119 (663)
Q Consensus 79 Le~Ir~~~dIPVIIL--SA~~d~e~v~kAl~aGA~DYLlKPvs 119 (663)
+++.-...+-|++++ |+..-.+.++ ..+||++.|+.
T Consensus 124 lr~~l~~~~~P~LllFGTGwGL~~ev~-----~~~D~iLePI~ 161 (185)
T PF09936_consen 124 LRRMLEEEDRPVLLLFGTGWGLAPEVM-----EQCDYILEPIR 161 (185)
T ss_dssp HHHHHHH--S-EEEEE--TT---HHHH-----TT-SEEB--TT
T ss_pred HHHHHhccCCeEEEEecCCCCCCHHHH-----HhcCeeEcccc
Confidence 654434456677666 4544444443 35899999975
No 152
>PRK12704 phosphodiesterase; Provisional
Probab=67.06 E-value=11 Score=43.69 Aligned_cols=45 Identities=22% Similarity=0.269 Sum_probs=39.4
Q ss_pred cEEEEecCCChH--HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 89 PVIMLSGNGDPK--LVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 89 PVIILSA~~d~e--~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.+|++|+.+... .+..+++.++.|+.+||++.+++...++.-+..
T Consensus 251 ~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~~~~~~~~~ 297 (520)
T PRK12704 251 EAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVEKARKEVDE 297 (520)
T ss_pred CeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHHHHHHHHHH
Confidence 488899988766 889999999999999999999999998876654
No 153
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=66.99 E-value=35 Score=36.88 Aligned_cols=60 Identities=22% Similarity=0.138 Sum_probs=46.4
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCChHHHHHHHhcCCceEE-----eCCCCHHHHHHHHHHHHHh
Q 006057 74 DGFKLLELVGLEMDLPVI--MLSGNGDPKLVMKGITHGACDYL-----LKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 74 DG~eLLe~Ir~~~dIPVI--ILSA~~d~e~v~kAl~aGA~DYL-----lKPvs~eeL~~~~q~Vlrr 133 (663)
-++++++.+.....+||| ...+-..++.+..++++||+.++ .|.-++.+....+..++..
T Consensus 184 ~~~elLkei~~~~~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~akafv~ai~~ 250 (287)
T TIGR00343 184 VPVELLLEVLKLGKLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKLAKAIVEATTH 250 (287)
T ss_pred CCHHHHHHHHHhCCCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHHH
Confidence 578888888776779998 66666788999999999999984 4555677777766666654
No 154
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=66.28 E-value=20 Score=37.73 Aligned_cols=58 Identities=19% Similarity=0.222 Sum_probs=44.9
Q ss_pred CHHHHHHHHhcc-CCCcEEEEecCCC------hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 74 DGFKLLELVGLE-MDLPVIMLSGNGD------PKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 74 DG~eLLe~Ir~~-~dIPVIILSA~~d------~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
+.+++++.+++. .++|+++|+-+.. ..++.++.++|+++++.-....++....+..+.
T Consensus 73 ~~~~~v~~ir~~~~~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~ 137 (256)
T TIGR00262 73 KCFELLKKVRQKHPNIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAK 137 (256)
T ss_pred HHHHHHHHHHhcCCCCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHH
Confidence 346667777755 6899888876654 677889999999999999998888776665553
No 155
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=65.89 E-value=47 Score=36.10 Aligned_cols=82 Identities=21% Similarity=0.245 Sum_probs=55.3
Q ss_pred HHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC-----CC-CC-CHHHHHHHHhccCCCcEEEEecCCChHHHH
Q 006057 32 TLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVH-----MP-DM-DGFKLLELVGLEMDLPVIMLSGNGDPKLVM 103 (663)
Q Consensus 32 ~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~-----MP-dm-DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~ 103 (663)
+.|+..|..|. .+.+.++|..+++. .+|+|++.=. .. +. .-+.|+..++...++|||.--+-.+...+.
T Consensus 130 ~~l~~~gi~v~~~v~s~~~A~~a~~~---G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~iPViaAGGI~dg~~ia 206 (330)
T PF03060_consen 130 ERLHAAGIKVIPQVTSVREARKAAKA---GADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVDIPVIAAGGIADGRGIA 206 (330)
T ss_dssp HHHHHTT-EEEEEESSHHHHHHHHHT---T-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-SS-EEEESS--SHHHHH
T ss_pred HHHHHcCCccccccCCHHHHHHhhhc---CCCEEEEeccccCCCCCccccceeeHHHHHhhhcCCcEEEecCcCCHHHHH
Confidence 45666676654 78999999887764 4899987632 22 22 357777788777789999988888888899
Q ss_pred HHHhcCCceEEeC
Q 006057 104 KGITHGACDYLLK 116 (663)
Q Consensus 104 kAl~aGA~DYLlK 116 (663)
.++..||++..+-
T Consensus 207 aal~lGA~gV~~G 219 (330)
T PF03060_consen 207 AALALGADGVQMG 219 (330)
T ss_dssp HHHHCT-SEEEES
T ss_pred HHHHcCCCEeecC
Confidence 9999999998754
No 156
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=65.86 E-value=61 Score=35.74 Aligned_cols=106 Identities=9% Similarity=0.163 Sum_probs=62.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceE-EEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDL-VISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDL-VIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
..+||.||.- -.-+..+..+.+.. +++++ .+....+..+.+.+. +.+ +..| --+++ ...++-
T Consensus 2 ~~~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~---~gi~~y~~-------~eell----~d~Di~ 66 (343)
T TIGR01761 2 DVQSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHR---LGVPLYCE-------VEELP----DDIDIA 66 (343)
T ss_pred CCcEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHH---hCCCccCC-------HHHHh----cCCCEE
Confidence 4589999997 44444444443333 56665 444434433333332 221 1111 11222 345666
Q ss_pred EEEEec----CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 90 VIMLSG----NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 90 VIILSA----~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+|.+.. ....+.+.+|+++|..=++-||+..+|..++++.+-++
T Consensus 67 ~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 67 CVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred EEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 666522 35578899999999999999999988887777766544
No 157
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=65.71 E-value=20 Score=38.21 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=68.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEe
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLS 94 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIILS 94 (663)
.|.+.-.++.....+...|....|.+..+..+++-++.+.++++.+|.+|+...... ..+...+.+ ..-+|+|++.
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~~~e~iDCLvle~~~~~---~~~~~~L~e~g~LLPaVil~ 78 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQHREQIDCLVLEQSPLL---PPLFNQLYEQGILLPAVILG 78 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCCTTTT-SEEEEETTSTT---HHHHHHHHHCT----EEEES
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHhchhccCEEEEecCCCc---HHHHHHHHHcCccccEEEEe
Confidence 466666778888899999998889999999999999999988889999999875533 445555543 3458999986
Q ss_pred cCCChHHHHHHHhcCCce-----EEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACD-----YLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~D-----YLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
....... --..|... .-++.-..++|-..|..++.+.
T Consensus 79 ~~~s~~~---~~~~~~~~YH~aEV~L~~~qL~ql~~~ID~AIsrF 120 (283)
T PF07688_consen 79 SSESAST---TSESGTVLYHSAEVHLPIDQLEQLSYNIDQAISRF 120 (283)
T ss_dssp ---S--T---TS--SSGSSBTT-EEE-CCGTTCHHHHHHHHHHHH
T ss_pred cCccccc---CCCCCceeeehHheEccHHHHHHHHHHHHHHHHHH
Confidence 6322110 00133333 3445555677777777666543
No 158
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=65.41 E-value=1.1e+02 Score=30.81 Aligned_cols=77 Identities=16% Similarity=0.077 Sum_probs=51.9
Q ss_pred HhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEe---CCCCCCCHHHHHHHHhcc--CCCcEEEEecCCChHHHHHHHhc
Q 006057 35 RRCQYHV-TTTSQAITALKLLRENKNKFDLVISD---VHMPDMDGFKLLELVGLE--MDLPVIMLSGNGDPKLVMKGITH 108 (663)
Q Consensus 35 ~~~gy~V-~tasdg~EALelLre~k~~pDLVIlD---v~MPdmDG~eLLe~Ir~~--~dIPVIILSA~~d~e~v~kAl~a 108 (663)
...|..+ ..+.+.+++.+..+. .+|.|.+- .... ..++++++.++.. .++|||...+-...+.+.+++++
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~~~---g~~~i~~t~~~~~~~-~~~~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~ 193 (217)
T cd00331 118 RELGMEVLVEVHDEEELERALAL---GAKIIGINNRDLKTF-EVDLNTTERLAPLIPKDVILVSESGISTPEDVKRLAEA 193 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHHHc---CCCEEEEeCCCcccc-CcCHHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHc
Confidence 3456654 355677776666543 47877654 1111 1235677766544 47899999998888999999999
Q ss_pred CCceEEe
Q 006057 109 GACDYLL 115 (663)
Q Consensus 109 GA~DYLl 115 (663)
||+++++
T Consensus 194 Ga~gviv 200 (217)
T cd00331 194 GADAVLI 200 (217)
T ss_pred CCCEEEE
Confidence 9999864
No 159
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP). CSP, a CarA and CarB heterodimer, catalyzes the production of carbamoyl phosphate which is subsequently employed in the metabolic pathways responsible for the synthesis of pyrimidine nucleotides or arginine. The MGS-like domain is the C-terminal domain of CarB and appears to play a regulatory role in CPS function by binding allosteric effector molecules, including UMP and ornithine.
Probab=65.31 E-value=51 Score=29.67 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=15.8
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE
Q 006057 21 DDDPTCLLLLETLLRRCQYHVTTT 44 (663)
Q Consensus 21 DDD~~~r~iL~~lL~~~gy~V~ta 44 (663)
|.+......+.+.|...||.+...
T Consensus 9 ~~~k~~~~~~~~~l~~~G~~l~aT 32 (110)
T cd01424 9 DRDKPEAVEIAKRLAELGFKLVAT 32 (110)
T ss_pred cCcHhHHHHHHHHHHHCCCEEEEc
Confidence 445555556667777789888654
No 160
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=65.29 E-value=53 Score=37.05 Aligned_cols=108 Identities=17% Similarity=0.219 Sum_probs=64.3
Q ss_pred CcEEEEEeC---CHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006057 14 GLRVLAVDD---DPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 14 glRVLIVDD---D~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI 88 (663)
.++++||.+ ++...+.++++++..+. .|.... ..+..+++. ..|++++--. .+.-|+.+++.+. ..+
T Consensus 324 ~~~l~IvG~g~~~~~~~~e~~~li~~l~l~~~V~f~G-~~~v~~~l~----~aDv~vlpS~-~Eg~p~~vlEAma--~G~ 395 (475)
T cd03813 324 DAEGWVIGPTDEDPEYAEECRELVESLGLEDNVKFTG-FQNVKEYLP----KLDVLVLTSI-SEGQPLVILEAMA--AGI 395 (475)
T ss_pred CeEEEEECCCCcChHHHHHHHHHHHHhCCCCeEEEcC-CccHHHHHH----hCCEEEeCch-hhcCChHHHHHHH--cCC
Confidence 356666643 34455566666665543 344433 333333443 3577776433 2334566666553 467
Q ss_pred cEEEEecCCChHHHHHHHhc------CCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 89 PVIMLSGNGDPKLVMKGITH------GACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~a------GA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|||. |... ...+.+.. |.++++..|-+.++|..++..++..
T Consensus 396 PVVa-td~g---~~~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~ll~~ 442 (475)
T cd03813 396 PVVA-TDVG---SCRELIEGADDEALGPAGEVVPPADPEALARAILRLLKD 442 (475)
T ss_pred CEEE-CCCC---ChHHHhcCCcccccCCceEEECCCCHHHHHHHHHHHhcC
Confidence 8876 4332 23444444 7899999999999999999988753
No 161
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=65.09 E-value=69 Score=35.86 Aligned_cols=105 Identities=20% Similarity=0.277 Sum_probs=62.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~ta--sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.++++||.|.+. ++.|+++.+.. .|... -..++...++.. .|++++--. .+.=|+.+++.+. ..+|||
T Consensus 290 ~~~l~ivG~G~~-~~~l~~~~~~~--~V~f~G~v~~~ev~~~~~~----aDv~V~pS~-~E~~g~~vlEAmA--~G~PVI 359 (465)
T PLN02871 290 GARLAFVGDGPY-REELEKMFAGT--PTVFTGMLQGDELSQAYAS----GDVFVMPSE-SETLGFVVLEAMA--SGVPVV 359 (465)
T ss_pred CcEEEEEeCChH-HHHHHHHhccC--CeEEeccCCHHHHHHHHHH----CCEEEECCc-ccccCcHHHHHHH--cCCCEE
Confidence 466777766553 34455554432 33332 233555555543 477765322 2333555666553 458998
Q ss_pred EEecCCChHHHHHHHhc---CCceEEeCCCCHHHHHHHHHHHHH
Q 006057 92 MLSGNGDPKLVMKGITH---GACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~a---GA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.-.. .. ..+.+.. |-.+++..|-+.++|...+..++.
T Consensus 360 ~s~~-gg---~~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll~ 399 (465)
T PLN02871 360 AARA-GG---IPDIIPPDQEGKTGFLYTPGDVDDCVEKLETLLA 399 (465)
T ss_pred EcCC-CC---cHhhhhcCCCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 5432 22 3344555 889999999999999999998875
No 162
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=64.95 E-value=92 Score=33.93 Aligned_cols=110 Identities=14% Similarity=0.174 Sum_probs=63.3
Q ss_pred CcEEEEEeCCH--------HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 14 GLRVLAVDDDP--------TCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 14 glRVLIVDDD~--------~~r~iL~~lL~~~gy~V~tas--dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
.++++||.+.+ ...+.++++....+-.|.... ..++...++. ..|++++--...+.=|..+++.+.
T Consensus 224 ~~~lvivG~g~~~~~~~~~~~~~~l~~~~~~l~~~v~~~G~~~~~~l~~~~~----~aDv~v~pS~~~E~f~~~~lEAma 299 (380)
T PRK15484 224 NLKLVVVGDPTASSKGEKAAYQKKVLEAAKRIGDRCIMLGGQPPEKMHNYYP----LADLVVVPSQVEEAFCMVAVEAMA 299 (380)
T ss_pred CeEEEEEeCCccccccchhHHHHHHHHHHHhcCCcEEEeCCCCHHHHHHHHH----hCCEEEeCCCCccccccHHHHHHH
Confidence 35666665432 233344444444444454433 2345555554 257777643333333455555543
Q ss_pred ccCCCcEEEEecCCChHHHHHHHhcCCceE-EeCCCCHHHHHHHHHHHHHh
Q 006057 84 LEMDLPVIMLSGNGDPKLVMKGITHGACDY-LLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 84 ~~~dIPVIILSA~~d~e~v~kAl~aGA~DY-LlKPvs~eeL~~~~q~Vlrr 133 (663)
..+|||.- .... ..+.+..|.++| +..|.+.++|.+.+..++..
T Consensus 300 --~G~PVI~s-~~gg---~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~d 344 (380)
T PRK15484 300 --AGKPVLAS-TKGG---ITEFVLEGITGYHLAEPMTSDSIISDINRTLAD 344 (380)
T ss_pred --cCCCEEEe-CCCC---cHhhcccCCceEEEeCCCCHHHHHHHHHHHHcC
Confidence 46898763 3322 344566788898 56789999999999888753
No 163
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.36 E-value=63 Score=34.85 Aligned_cols=101 Identities=19% Similarity=0.252 Sum_probs=60.2
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHH-------------HHhcCCCceEEEEeCCCCCCCHH
Q 006057 15 LRVLAVD--DDPTC---LLLLETLLRRCQYHVTTTSQAITALKL-------------LRENKNKFDLVISDVHMPDMDGF 76 (663)
Q Consensus 15 lRVLIVD--DD~~~---r~iL~~lL~~~gy~V~tasdg~EALel-------------Lre~k~~pDLVIlDv~MPdmDG~ 76 (663)
|+|.||- +.+.. ...+.+.|++.++.|.......+.+.. ..+....+|+||+ -+.||-
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT 76 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEELDGSADMVIS----IGGDGT 76 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhhcccCCCEEEE----ECCcHH
Confidence 5677773 22333 344555666778887765432222210 0111124788887 577883
Q ss_pred HHHHHHhc--cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 77 KLLELVGL--EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 77 eLLe~Ir~--~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+|+..+. ..++||+-+- .|-.+||. .++++++..++..++++.
T Consensus 77 -~L~aa~~~~~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (292)
T PRK01911 77 -FLRTATYVGNSNIPILGIN-------------TGRLGFLA-TVSKEEIEETIDELLNGD 121 (292)
T ss_pred -HHHHHHHhcCCCCCEEEEe-------------cCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 4443432 3478988654 35567776 478899999999998765
No 164
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=64.35 E-value=1.1e+02 Score=30.17 Aligned_cols=99 Identities=16% Similarity=0.074 Sum_probs=60.6
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHHhCCCEEE----EECCHHHHHHHHHhcCCCceEEEEeCC-----CCCCCHHHHHHHH
Q 006057 14 GLRVLAVDDD--PTCLLLLETLLRRCQYHVT----TTSQAITALKLLRENKNKFDLVISDVH-----MPDMDGFKLLELV 82 (663)
Q Consensus 14 glRVLIVDDD--~~~r~iL~~lL~~~gy~V~----tasdg~EALelLre~k~~pDLVIlDv~-----MPdmDG~eLLe~I 82 (663)
|...+++-+. +.....+.+.+++.|..+. .+.+..++++.+.. ..|.|.+... .....+.+.++.+
T Consensus 77 Gad~i~~h~~~~~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~---~~d~v~~~~~~~~~~~~~~~~~~~i~~~ 153 (202)
T cd04726 77 GADIVTVLGAAPLSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKL---GVDIVILHRGIDAQAAGGWWPEDDLKKV 153 (202)
T ss_pred CCCEEEEEeeCCHHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHC---CCCEEEEcCcccccccCCCCCHHHHHHH
Confidence 4445554433 2223444455555665543 45677888774432 5788877421 1123556777777
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 83 r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+...++||++.-+- ..+.+.++++.||+.++.-
T Consensus 154 ~~~~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 154 KKLLGVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred HhhcCCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 65467888776665 4788999999999987543
No 165
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=64.04 E-value=52 Score=34.93 Aligned_cols=107 Identities=23% Similarity=0.261 Sum_probs=62.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
+++++++.+.+. +..+++.++..+. .|.......+...++. ..|++++=-. .+.=|..+++.+. ..+|||
T Consensus 229 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adi~v~pS~-~Eg~~~~~lEAma--~G~Pvv 300 (374)
T TIGR03088 229 RLRLVIVGDGPA-RGACEQMVRAAGLAHLVWLPGERDDVPALMQ----ALDLFVLPSL-AEGISNTILEAMA--SGLPVI 300 (374)
T ss_pred ceEEEEecCCch-HHHHHHHHHHcCCcceEEEcCCcCCHHHHHH----hcCEEEeccc-cccCchHHHHHHH--cCCCEE
Confidence 456666665442 3445555555443 2333333333344443 2466664221 2333556666553 468987
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
+ |.... ..+.+..|.++++..|-+.++|...+..++.
T Consensus 301 ~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 301 A-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred E-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 6 33322 3455667889999999999999999988765
No 166
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.73 E-value=76 Score=36.27 Aligned_cols=98 Identities=11% Similarity=0.068 Sum_probs=54.9
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC---C--HHHHHH-HHhc
Q 006057 14 GLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM---D--GFKLLE-LVGL 84 (663)
Q Consensus 14 glRVLIVDDD~~~---r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdm---D--G~eLLe-~Ir~ 84 (663)
|.+|+|++-|+.- ...++.+.+..+..+..+.+..++.+.++. ..+|+||+|. ++. + -++-+. .++.
T Consensus 252 G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~--~~~D~VLIDT--aGr~~rd~~~l~eL~~~~~~ 327 (432)
T PRK12724 252 GKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLAR--DGSELILIDT--AGYSHRNLEQLERMQSFYSC 327 (432)
T ss_pred CCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHh--CCCCEEEEeC--CCCCccCHHHHHHHHHHHHh
Confidence 5689999988722 233444444456666666666677776654 3689999996 332 2 222222 2222
Q ss_pred c----CCCcEEEEecCCChHHHHHHHh----cCCceEEe
Q 006057 85 E----MDLPVIMLSGNGDPKLVMKGIT----HGACDYLL 115 (663)
Q Consensus 85 ~----~dIPVIILSA~~d~e~v~kAl~----aGA~DYLl 115 (663)
. +.-.++++++......+..++. .|.+++|.
T Consensus 328 ~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIl 366 (432)
T PRK12724 328 FGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILL 366 (432)
T ss_pred hcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEE
Confidence 1 2235677887776655444433 44555433
No 167
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=63.33 E-value=61 Score=35.58 Aligned_cols=111 Identities=16% Similarity=0.142 Sum_probs=56.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH---------------VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKL 78 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~---------------V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eL 78 (663)
.++++||-+.+.....+++.++..|.. |.......+...++. .-|++++---..+.-|..+
T Consensus 262 ~~~liivG~g~~r~~~l~~~~~~~gl~~~~~~~~~~~~~~~~v~l~~~~~el~~~y~----~aDi~~v~~S~~e~~g~~~ 337 (425)
T PRK05749 262 NLLLILVPRHPERFKEVEELLKKAGLSYVRRSQGEPPSADTDVLLGDTMGELGLLYA----IADIAFVGGSLVKRGGHNP 337 (425)
T ss_pred CcEEEEcCCChhhHHHHHHHHHhCCCcEEEccCCCCCCCCCcEEEEecHHHHHHHHH----hCCEEEECCCcCCCCCCCH
Confidence 456666666664435566666655542 222222223333332 2466555211111223344
Q ss_pred HHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 79 LELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 79 Le~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
++.+ ...+|||+-........+.+.+. ..+++..|-+.++|...+..++.
T Consensus 338 lEAm--a~G~PVI~g~~~~~~~e~~~~~~--~~g~~~~~~d~~~La~~l~~ll~ 387 (425)
T PRK05749 338 LEPA--AFGVPVISGPHTFNFKEIFERLL--QAGAAIQVEDAEDLAKAVTYLLT 387 (425)
T ss_pred HHHH--HhCCCEEECCCccCHHHHHHHHH--HCCCeEEECCHHHHHHHHHHHhc
Confidence 4433 24689885322233333333332 23567778899999999988875
No 168
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=62.64 E-value=69 Score=29.86 Aligned_cols=109 Identities=21% Similarity=0.259 Sum_probs=66.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQ--AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasd--g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
.++++|+.+.+.. ..+.......+. .+..... ..+..++++. .|++++=... +.-|..+++.+. ..+|
T Consensus 47 ~~~l~i~G~~~~~-~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~----~di~v~~s~~-e~~~~~~~Ea~~--~g~p 118 (172)
T PF00534_consen 47 NYKLVIVGDGEYK-KELKNLIEKLNLKENIIFLGYVPDDELDELYKS----SDIFVSPSRN-EGFGLSLLEAMA--CGCP 118 (172)
T ss_dssp TEEEEEESHCCHH-HHHHHHHHHTTCGTTEEEEESHSHHHHHHHHHH----TSEEEE-BSS-BSS-HHHHHHHH--TT-E
T ss_pred CeEEEEEcccccc-ccccccccccccccccccccccccccccccccc----ceeccccccc-cccccccccccc--cccc
Confidence 4567777633322 234444444443 3433333 3355566653 4777775444 445666666553 4577
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
||+ +. .....+.+..+..+++..+.+.++|..++..++...
T Consensus 119 vI~-~~---~~~~~e~~~~~~~g~~~~~~~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 119 VIA-SD---IGGNNEIINDGVNGFLFDPNDIEELADAIEKLLNDP 159 (172)
T ss_dssp EEE-ES---STHHHHHSGTTTSEEEESTTSHHHHHHHHHHHHHHH
T ss_pred eee-cc---ccCCceeeccccceEEeCCCCHHHHHHHHHHHHCCH
Confidence 774 33 334567778888999999999999999999998764
No 169
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=62.40 E-value=66 Score=33.64 Aligned_cols=106 Identities=22% Similarity=0.271 Sum_probs=61.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
.+++|+.+.+. ...++++....+. .|.......+..+++. ..|++++=.. .+.-|+.+++.+. ..+|||.
T Consensus 228 ~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~~d~~v~ps~-~E~~~~~~~EAma--~g~PvI~ 299 (371)
T cd04962 228 ARLLLVGDGPE-RSPAERLARELGLQDDVLFLGKQDHVEELLS----IADLFLLPSE-KESFGLAALEAMA--CGVPVVA 299 (371)
T ss_pred ceEEEEcCCcC-HHHHHHHHHHcCCCceEEEecCcccHHHHHH----hcCEEEeCCC-cCCCccHHHHHHH--cCCCEEE
Confidence 35555544432 2334444444432 3444443333333333 2467665432 2344666666553 4689886
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
. ... ...+.+..|..+|+.+|-+.+++...+..++.
T Consensus 300 s-~~~---~~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~~ 335 (371)
T cd04962 300 S-NAG---GIPEVVKHGETGFLVDVGDVEAMAEYALSLLE 335 (371)
T ss_pred e-CCC---CchhhhcCCCceEEcCCCCHHHHHHHHHHHHh
Confidence 3 222 24566778889999999999999999988764
No 170
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=61.83 E-value=53 Score=29.44 Aligned_cols=72 Identities=17% Similarity=0.094 Sum_probs=48.6
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHh-ccC-CCcEEEEe
Q 006057 21 DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVG-LEM-DLPVIMLS 94 (663)
Q Consensus 21 DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MPdmD-G~eLLe~Ir-~~~-dIPVIILS 94 (663)
|.++.-...+..+|+..|+++.... ..++.++.+.+. +||+|.+-+.+.... .++.+..++ ..+ +++|++-.
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i~~~--~pdiV~iS~~~~~~~~~~~~~~~~~~~~p~~~~ivvGG 87 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAAKEE--DADVVGLSALSTTHMEAMKLVIEALKELGIDIPVVVGG 87 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHHHHc--CCCEEEEecchHhHHHHHHHHHHHHHhcCCCCeEEEeC
Confidence 6667778889999999999988553 455566666653 799999988775432 344444443 344 66666543
No 171
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=61.64 E-value=92 Score=33.05 Aligned_cols=60 Identities=15% Similarity=0.250 Sum_probs=45.0
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE------EeCCCCHHHHHHHHHHHHHhhc
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY------LLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DY------LlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+++++.+++..++|||....-.+.+.+.+++.+||+.. +..|.-..+++.-+..++.++.
T Consensus 223 l~~v~~i~~~~~ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~~P~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 223 LRMVYQVYQAVDIPIIGMGGISSAEDAIEFIMAGASAVQVGTANFYDPYAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred HHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhcCcHHHHHHHHHHHHHHHHcC
Confidence 56777777666899999999999999999999998643 4457666666666666665543
No 172
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=61.41 E-value=1e+02 Score=31.77 Aligned_cols=109 Identities=22% Similarity=0.277 Sum_probs=63.1
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006057 14 GLRVLAVDDDP---TCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 14 glRVLIVDDD~---~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI 88 (663)
.++++||.+.+ .....+.+.+...+. .|......++..+++. ..|++|+=-.-++.-|..+++.+. ..+
T Consensus 216 ~~~l~ivG~~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~~~l~----~ad~~i~ps~~~e~~~~~l~EA~a--~G~ 289 (355)
T cd03819 216 DVHLLIVGDAQGRRFYYAELLELIKRLGLQDRVTFVGHCSDMPAAYA----LADIVVSASTEPEAFGRTAVEAQA--MGR 289 (355)
T ss_pred CeEEEEEECCcccchHHHHHHHHHHHcCCcceEEEcCCcccHHHHHH----hCCEEEecCCCCCCCchHHHHHHh--cCC
Confidence 35566665432 233334444444432 3444444344444444 257776643234455666776653 467
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|||+. .... ..+.+..+.++++..|-+.++|...+..++.
T Consensus 290 PvI~~-~~~~---~~e~i~~~~~g~~~~~~~~~~l~~~i~~~~~ 329 (355)
T cd03819 290 PVIAS-DHGG---ARETVRPGETGLLVPPGDAEALAQALDQILS 329 (355)
T ss_pred CEEEc-CCCC---cHHHHhCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 98753 3222 3455667779999999999999999965543
No 173
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=61.23 E-value=84 Score=35.94 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=36.6
Q ss_pred CCcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEeC
Q 006057 13 SGLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENK--NKFDLVISDV 68 (663)
Q Consensus 13 ~glRVLIVDDD~~---~r~iL~~lL~~~gy~V~tasdg~EALelLre~k--~~pDLVIlDv 68 (663)
.+.+|++|+-|+. ..+.|+.+-+..+..+..+.+..+..+.+...+ ..+|+||+|.
T Consensus 268 ~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~~DvVLIDT 328 (436)
T PRK11889 268 KKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARVDYILIDT 328 (436)
T ss_pred cCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccCCCEEEEeC
Confidence 3568999998864 334455555566777777777666555554322 2589999997
No 174
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=60.73 E-value=71 Score=33.67 Aligned_cols=93 Identities=15% Similarity=0.196 Sum_probs=61.3
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDD--PTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD--~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
|++.++..+ ....+.++..|.+.|..+....+.. ......|+||+ -+.||. +|+.++.. ++||+-
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-------~~~~~~d~vi~----iGGDGT-~L~a~~~~-~~Pilg 67 (256)
T PRK14075 1 MKLGIFYREEKEKEAKFLKEKISKEHEVVEFCEASA-------SGKVTADLIIV----VGGDGT-VLKAAKKV-GTPLVG 67 (256)
T ss_pred CEEEEEeCccHHHHHHHHHHHHHHcCCeeEeecccc-------cccCCCCEEEE----ECCcHH-HHHHHHHc-CCCEEE
Confidence 456666443 3345567777777788777664432 12235788887 577884 44545444 899887
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+. .|-.+||. .+.++++..++..++++.
T Consensus 68 in-------------~G~lGfl~-~~~~~~~~~~l~~~~~g~ 95 (256)
T PRK14075 68 FK-------------AGRLGFLS-SYTLEEIDRFLEDLKNWN 95 (256)
T ss_pred Ee-------------CCCCcccc-ccCHHHHHHHHHHHHcCC
Confidence 65 35567877 688899999998887654
No 175
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=60.31 E-value=54 Score=30.83 Aligned_cols=56 Identities=25% Similarity=0.169 Sum_probs=41.0
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 60 KFDLVISDVHMPDMDG-------FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG-------~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
..|.|.++-..+...+ ...+..++....+||++..+-...+.+.++++.||+.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRGSKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhcCCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 5788888776664432 2334455556789999988887778899999999988764
No 176
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=59.29 E-value=1.6e+02 Score=29.35 Aligned_cols=109 Identities=19% Similarity=0.233 Sum_probs=63.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.++++|+.+.+. ...++..+...+. .|......++...++. ..|++|.-... +.-|..+++.+. ..+|||
T Consensus 209 ~~~l~i~G~~~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~ad~~i~ps~~-e~~~~~~~Ea~a--~G~Pvi 280 (348)
T cd03820 209 DWKLRIVGDGPE-REALEALIKELGLEDRVILLGFTKNIEEYYA----KASIFVLTSRF-EGFPMVLLEAMA--FGLPVI 280 (348)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCCeEEEcCCcchHHHHHH----hCCEEEeCccc-cccCHHHHHHHH--cCCCEE
Confidence 456666665432 2334444444432 3444443344445554 25777775544 333566666553 568887
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+....... ...+..+..+++.++.+.+++...+..++..
T Consensus 281 ~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~i~~ll~~ 319 (348)
T cd03820 281 SFDCPTGP---SEIIEDGVNGLLVPNGDVEALAEALLRLMED 319 (348)
T ss_pred EecCCCch---HhhhccCcceEEeCCCCHHHHHHHHHHHHcC
Confidence 54322222 2344566789999999999999999998653
No 177
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=59.29 E-value=72 Score=34.33 Aligned_cols=100 Identities=16% Similarity=0.299 Sum_probs=61.0
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHHHHH-------HHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 16 RVLAVD--DDPTC---LLLLETLLRRCQYHVTTTSQAITALK-------LLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 16 RVLIVD--DD~~~---r~iL~~lL~~~gy~V~tasdg~EALe-------lLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
+|+||- +.+.. ...+.+.|++.++++.........+. ...+....+|+||+ -+.||- +++.++
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 81 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPALTPEEIGARADLAVV----LGGDGT-MLGIGR 81 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccChhHhccCCCEEEE----ECCcHH-HHHHHH
Confidence 477773 33333 34555666677888776543222111 01111225788887 577884 444443
Q ss_pred c--cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 84 L--EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 84 ~--~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
. ..++||+-+. .|-.+||. .+.++++...+..++++.
T Consensus 82 ~~~~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 120 (291)
T PRK02155 82 QLAPYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPMLAGN 120 (291)
T ss_pred HhcCCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHHcCC
Confidence 2 3578988654 46678888 789999999999988654
No 178
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=59.03 E-value=72 Score=36.28 Aligned_cols=100 Identities=17% Similarity=0.236 Sum_probs=62.0
Q ss_pred CCcEEEEEeC---CH-HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------C
Q 006057 13 SGLRVLAVDD---DP-TCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------M 73 (663)
Q Consensus 13 ~glRVLIVDD---D~-~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MPd------------m 73 (663)
.|..+++||- +. ...+.++.+-+.+ ...|. .+.+.++|..++.. ..|.|.+-+. |+ .
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~a---Gad~i~vg~g-~G~~~~t~~~~~~g~ 310 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDA---GADGLRVGIG-PGSICTTRIVAGVGV 310 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCCccceecCCCc
Confidence 4678888886 43 2333444443332 22322 56788888887764 4787755331 11 1
Q ss_pred CHHHHHHHH---hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 74 DGFKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 74 DG~eLLe~I---r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
-.+.++..+ ....++|||.-.+-.....+.+|+.+||+...+-
T Consensus 311 p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G 356 (450)
T TIGR01302 311 PQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLG 356 (450)
T ss_pred cHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 123343323 2345789988778888999999999999988764
No 179
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=59.02 E-value=80 Score=35.74 Aligned_cols=91 Identities=15% Similarity=0.085 Sum_probs=52.1
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCC-CCCC--HHHHH-HHHh-cc
Q 006057 14 GLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHM-PDMD--GFKLL-ELVG-LE 85 (663)
Q Consensus 14 glRVLIVDDD~~~---r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~M-PdmD--G~eLL-e~Ir-~~ 85 (663)
+.+|.+|+-|+.- .+.|..+-+..+..+..+.+..+....+.... .+|+||+|.-- ...+ ..+.+ +.+. ..
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~-~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~ 329 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLR-DCDVILIDTAGRSQRDKRLIEELKALIEFSG 329 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhC-CCCEEEEeCCCCCCCCHHHHHHHHHHHhccC
Confidence 5789999988742 23344444555667766777776666666533 68999999731 1112 22233 3334 11
Q ss_pred CCC-cEEEEecCCChHHHHHH
Q 006057 86 MDL-PVIMLSGNGDPKLVMKG 105 (663)
Q Consensus 86 ~dI-PVIILSA~~d~e~v~kA 105 (663)
..+ .++++++......+.++
T Consensus 330 ~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 330 EPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred CCCeEEEEEECCCCHHHHHHH
Confidence 222 36677776665554443
No 180
>PF01285 TEA: TEA/ATTS domain family; InterPro: IPR000818 Transcriptional enhancer activators are nuclear proteins that contain a TEA/ATTSdomain, a DNA-binding region of 66-68 amino acids. The TEA/ATTS domain is found in the N-termini of certain gene regulatory proteins, such as the Simian virus 40 (SV40) enhancer factor TEF-1, yeast trans-acting factor TEC-1 (which is required for TY1 enhancer activity), and the Aspergillus abaA regulatory gene product. SV40 and retroviral enhancers, and those to which TEF-1, TEC-1 and abaA proteins bind, contain GT-IIC sites: the TEA/ATTS domain may therefore recognise and bind such sites. Secondary structure predictions suggest the presence of 3 helices, but have not confirmed the presence of the helix-turn-helix motif characteristic of many DNA-binding proteins: DNA-binding may therefore be effected by a different mechanism [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3L15_B 2HZD_A 3KYS_A 3JUA_C 4EAZ_B.
Probab=58.67 E-value=4.9 Score=45.53 Aligned_cols=52 Identities=25% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCCceeeehhhhHHHHHHHHHh---cCCC------------cchHHHHhhcCCCCCCHHHHHHhhhhh
Q 006057 198 KKPRVVWSVELHRKFVAAVNQL---GIDK------------AVPKKILDLMNVEKLTRENVASHLQKY 250 (663)
Q Consensus 198 kk~rv~Wt~eLh~kFv~av~~L---G~dk------------A~pk~Ile~m~v~~LT~~~VaSHLQky 250 (663)
.+..-+|.+++..-|++|+..+ |-.| -+-.||....+ ..-||.+|+||+|--
T Consensus 46 ~~~~~vw~~~~e~af~~al~~~~~~g~~k~~~~~~~~grn~li~~yi~~~tg-~~rt~kqvsshiqvl 112 (431)
T PF01285_consen 46 GDGEGVWPPDIEQAFQEALAIYPPCGRRKLSDEGKMYGRNELISDYIKLKTG-KTRTRKQVSSHIQVL 112 (431)
T ss_dssp GGGS--S-HHHHHHHHHHHHHS-SSS---HHHH-----THHHHHHHHHHHHS-----SHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhCCCCCCcccccccccccchhHHHHHHHHHhC-cccchhHHHHHHHHH
Confidence 4566899999999999999766 3333 23345554443 246999999999986
No 181
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=58.06 E-value=25 Score=33.74 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=26.8
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 47 AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
..++++.++. ..+|+||+|. ++.... ....+ ...+..||+++..
T Consensus 80 ~~~~~~~~~~--~~~D~iiIDt--aG~~~~-~~~~~-~~Ad~~ivv~tpe 123 (148)
T cd03114 80 TPEVIRVLDA--AGFDVIIVET--VGVGQS-EVDIA-SMADTTVVVMAPG 123 (148)
T ss_pred HHHHHHHHHh--cCCCEEEEEC--CccChh-hhhHH-HhCCEEEEEECCC
Confidence 3456666654 3799999999 665432 22222 3456677777765
No 182
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=57.04 E-value=69 Score=34.19 Aligned_cols=101 Identities=19% Similarity=0.250 Sum_probs=59.1
Q ss_pred cEEEEEeC--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHH-----HH-HhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 15 LRVLAVDD--DPT---CLLLLETLLRRCQYHVTTTSQAITALK-----LL-RENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 15 lRVLIVDD--D~~---~r~iL~~lL~~~gy~V~tasdg~EALe-----lL-re~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
|||.||-. .+. ....+.++|+..+++|.......+... .+ ......+|+||+ -+.||. +++.++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-lL~a~~ 75 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEEDVLPLEEMDVDFIIA----IGGDGT-ILRIEH 75 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccccccccCCCEEEE----EeCcHH-HHHHHH
Confidence 67888732 222 344566667777888776533221111 00 000125788776 477884 333333
Q ss_pred -ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 84 -LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 84 -~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
...++||+.+.. |-.+||. .+.++++..++..++++.
T Consensus 76 ~~~~~~pi~gIn~-------------G~lGFl~-~~~~~~~~~~l~~i~~g~ 113 (277)
T PRK03708 76 KTKKDIPILGINM-------------GTLGFLT-EVEPEETFFALSRLLEGD 113 (277)
T ss_pred hcCCCCeEEEEeC-------------CCCCccc-cCCHHHHHHHHHHHHcCC
Confidence 234789887764 4446665 677899999999888664
No 183
>PRK14974 cell division protein FtsY; Provisional
Probab=57.03 E-value=1.4e+02 Score=32.90 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=51.4
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEeCCCCCCC--HHHHHHH
Q 006057 14 GLRVLAVDDDP---TCLLLLETLLRRCQYHVTTTS---QA----ITALKLLRENKNKFDLVISDVHMPDMD--GFKLLEL 81 (663)
Q Consensus 14 glRVLIVDDD~---~~r~iL~~lL~~~gy~V~tas---dg----~EALelLre~k~~pDLVIlDv~MPdmD--G~eLLe~ 81 (663)
+.+|++++.|. ...+.|+.+....|..+.... +. .+|++.++. ..+|+||+|.. +.. -..++..
T Consensus 168 g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~~~--~~~DvVLIDTa--Gr~~~~~~lm~e 243 (336)
T PRK14974 168 GFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHAKA--RGIDVVLIDTA--GRMHTDANLMDE 243 (336)
T ss_pred CCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHHHh--CCCCEEEEECC--CccCCcHHHHHH
Confidence 56888888773 333455555666666554332 21 234444443 25899999984 221 2233332
Q ss_pred H----h-ccCCCcEEEEecCCChHHHHH--HH--hcCCceEEeC
Q 006057 82 V----G-LEMDLPVIMLSGNGDPKLVMK--GI--THGACDYLLK 116 (663)
Q Consensus 82 I----r-~~~dIPVIILSA~~d~e~v~k--Al--~aGA~DYLlK 116 (663)
+ + ..++..++++.+....+.+.. .+ ..+++.+|.=
T Consensus 244 L~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlT 287 (336)
T PRK14974 244 LKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILT 287 (336)
T ss_pred HHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEe
Confidence 2 2 235555666666554333322 22 2466665443
No 184
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=56.96 E-value=66 Score=31.60 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=48.8
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCC--------CCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCce
Q 006057 42 TTTSQAITALKLLRENKNKFDLVISDVHMPD--------MDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACD 112 (663)
Q Consensus 42 ~tasdg~EALelLre~k~~pDLVIlDv~MPd--------mDG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~D 112 (663)
..+.+.+++.+... ..+|+|.++-..|. ..|+++++.+... +++||+++.+- ..+.+.++++.|+++
T Consensus 101 ~s~h~~~e~~~a~~---~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~~~pv~a~GGI-~~~~~~~~~~~G~~g 176 (196)
T TIGR00693 101 VSTHNLEELAEAEA---EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSIDIPIVAIGGI-TLENAAEVLAAGADG 176 (196)
T ss_pred EeCCCHHHHHHHhH---cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcCCCCEEEECCc-CHHHHHHHHHcCCCE
Confidence 35667777766443 26899988665542 2378888877543 46998887665 467888899999988
Q ss_pred EEe
Q 006057 113 YLL 115 (663)
Q Consensus 113 YLl 115 (663)
+..
T Consensus 177 va~ 179 (196)
T TIGR00693 177 VAV 179 (196)
T ss_pred EEE
Confidence 643
No 185
>cd03313 enolase Enolase: Enolases are homodimeric enzymes that catalyse the reversible dehydration of 2-phospho-D-glycerate to phosphoenolpyruvate as part of the glycolytic and gluconeogenesis pathways. The reaction is facilitated by the presence of metal ions.
Probab=56.88 E-value=73 Score=35.82 Aligned_cols=107 Identities=16% Similarity=0.295 Sum_probs=65.0
Q ss_pred EeCCHHHHHHHHHHHHhCCCE----EEEEC-----------------------CHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 20 VDDDPTCLLLLETLLRRCQYH----VTTTS-----------------------QAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 20 VDDD~~~r~iL~~lL~~~gy~----V~tas-----------------------dg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
++++....+.+++.++..||. |..+- +.++|+++++....+++++.+.==++.
T Consensus 209 ~~~d~~~l~~i~eAi~~~g~~~G~dv~i~lD~aas~~~~~~~y~~~~~~~~~~t~~eai~~~~~l~e~~~i~~iEdPl~~ 288 (408)
T cd03313 209 LSSNEEALDLLVEAIEKAGYEPGKKIAIALDVAASEFYDEGKYVYDSDEGKKLTSEELIDYYKELVKKYPIVSIEDPFDE 288 (408)
T ss_pred CCChHHHHHHHHHHHHHhcCCCCCeEEEEEehhhhhhcccCcceeccCCCcccCHHHHHHHHHHHHHhCCcEEEEeCCCC
Confidence 356777788889999887663 33222 337787766653235778777655554
Q ss_pred CCHHHHHHHHhccC--CCcEEEEecC---CChHHHHHHHhcCCce-EEeCCCCHHHHHHHHHH
Q 006057 73 MDGFKLLELVGLEM--DLPVIMLSGN---GDPKLVMKGITHGACD-YLLKPVRIEELKNIWQH 129 (663)
Q Consensus 73 mDG~eLLe~Ir~~~--dIPVIILSA~---~d~e~v~kAl~aGA~D-YLlKPvs~eeL~~~~q~ 129 (663)
.| ++-.+.++... .+|| +... .....+.++++.|+++ +++||-..--|-..++.
T Consensus 289 ~D-~eg~~~L~~~~g~~ipi--~gdE~~~~~~~~~~~~i~~~a~d~v~ik~~~iGGite~~~i 348 (408)
T cd03313 289 DD-WEGWAKLTAKLGDKIQI--VGDDLFVTNPERLKKGIEKKAANALLIKVNQIGTLTETIEA 348 (408)
T ss_pred cC-HHHHHHHHHhcCCCCeE--EcCCcccCCHHHHHHHHHhCCCCEEEEcccccCCHHHHHHH
Confidence 44 44444454443 4554 3333 2467788888888755 56798775555444443
No 186
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.94 E-value=54 Score=35.41 Aligned_cols=93 Identities=15% Similarity=0.063 Sum_probs=55.5
Q ss_pred EEEEeCCHHHHHHHHHHH----HhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCC
Q 006057 17 VLAVDDDPTCLLLLETLL----RRCQY--HV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDL 88 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL----~~~gy--~V-~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dI 88 (663)
|||=|.+-...-.+.+.+ +..++ .| +.+.+.+||.+.+.. .+|+|.+|-.-| .+=-+.++.++. .+.+
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~~~---GaD~I~LDn~~~-e~l~~av~~~~~~~~~i 244 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEALEY---GADIIMLDNMPV-DLMQQAVQLIRQQNPRV 244 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHHHc---CCCEEEECCCCH-HHHHHHHHHHHhcCCCe
Confidence 666666644433344433 33442 33 467889999998864 589999993222 111122233332 3455
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEE
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
| |..++--..+.+.+..+.|++.+-
T Consensus 245 ~-leAsGGIt~~ni~~ya~tGvD~Is 269 (288)
T PRK07428 245 K-IEASGNITLETIRAVAETGVDYIS 269 (288)
T ss_pred E-EEEECCCCHHHHHHHHHcCCCEEE
Confidence 5 445666677888888899988764
No 187
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=55.72 E-value=52 Score=35.51 Aligned_cols=72 Identities=13% Similarity=0.101 Sum_probs=48.3
Q ss_pred EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 40 HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 40 ~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
..+.+.+.++|.+.+.. .+|+|++|- |...+--++.+.++....-.+|-.|+--..+.+......|++.+.+
T Consensus 192 IeVEv~tleqa~ea~~a---gaDiI~LDn-~~~e~l~~av~~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 263 (284)
T PRK06096 192 IVVEADTPKEAIAALRA---QPDVLQLDK-FSPQQATEIAQIAPSLAPHCTLSLAGGINLNTLKNYADCGIRLFIT 263 (284)
T ss_pred EEEECCCHHHHHHHHHc---CCCEEEECC-CCHHHHHHHHHHhhccCCCeEEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 44577899999999864 589999984 4332333333444322223456678888888898888899877543
No 188
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.05 E-value=1.1e+02 Score=32.80 Aligned_cols=92 Identities=14% Similarity=0.095 Sum_probs=57.4
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCCC---EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--c-C
Q 006057 17 VLAVDDDPTCLLLLETLLR----RCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--E-M 86 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~----~~gy---~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~-~ 86 (663)
|||=|.+-.....+...++ +..+ ..+.+.+.+||++.+.. .+|+|.+|- ++--++.+.++. . .
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~~---GaDiI~LDn----~~~e~l~~~v~~~~~~~ 227 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMNA---GADIVMCDN----MSVEEIKEVVAYRNANY 227 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhhccC
Confidence 5655665444444444443 3443 34578899999999864 589999875 233233333331 1 1
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 87 DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 87 dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.-.+|..++.-..+.+.+..+.|++.+.+
T Consensus 228 ~~~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 228 PHVLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred CCeEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 12356678778889999999999987643
No 189
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=54.84 E-value=45 Score=33.17 Aligned_cols=74 Identities=15% Similarity=0.159 Sum_probs=45.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE-eCC-CCCCCH--HHHHHHHhccCCCcEEE
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS-DVH-MPDMDG--FKLLELVGLEMDLPVIM 92 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIl-Dv~-MPdmDG--~eLLe~Ir~~~dIPVII 92 (663)
|||||....+-..+..+|+..|++|.........++.+.+ ..||.||+ -=- -|..++ .+++++. ...+||+-
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iilsgGpg~p~~~~~~~~~i~~~--~~~~PvLG 77 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEIEA--LLPLLIVISPGPCTPNEAGISLEAIRHF--AGKLPILG 77 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHHHh--cCCCEEEEcCCCCChhhcchhHHHHHHh--ccCCCEEE
Confidence 8999999999999999999999988765532211233332 25886555 111 122222 2344433 34689887
Q ss_pred Ee
Q 006057 93 LS 94 (663)
Q Consensus 93 LS 94 (663)
+.
T Consensus 78 IC 79 (188)
T TIGR00566 78 VC 79 (188)
T ss_pred EC
Confidence 65
No 190
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=54.84 E-value=46 Score=33.09 Aligned_cols=94 Identities=15% Similarity=0.030 Sum_probs=57.4
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CC--C-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 17 VLAVDDDPTCLLLLETLLRR----CQ--Y-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~----~g--y-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
|||=|.+-.+.-.+.+.+++ .. . ..+.+.+.+++.+.+.. .+|+|.+|-.-|+ +--++++.++....-.
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~---g~d~I~lD~~~~~-~~~~~v~~l~~~~~~v 128 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEA---GADIIMLDNMSPE-DLKEAVEELRELNPRV 128 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHT---T-SEEEEES-CHH-HHHHHHHHHHHHTTTS
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHh---CCCEEEecCcCHH-HHHHHHHHHhhcCCcE
Confidence 56656555544334444432 22 2 34478899999998875 5999999976541 2222333343434347
Q ss_pred EEEEecCCChHHHHHHHhcCCceEE
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.|.+|+.-..+.+.+..+.|++.+-
T Consensus 129 ~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 129 KIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp EEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEE
Confidence 7778888888889898899987764
No 191
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=54.73 E-value=1.6e+02 Score=30.97 Aligned_cols=101 Identities=19% Similarity=0.158 Sum_probs=60.0
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCC---------HHHHHH
Q 006057 14 GLRVLAVDDDP-TCLLLLETLLRRCQYHVT-TT--SQAITALKLLRENKNKFDLVISDVHMPDMD---------GFKLLE 80 (663)
Q Consensus 14 glRVLIVDDD~-~~r~iL~~lL~~~gy~V~-ta--sdg~EALelLre~k~~pDLVIlDv~MPdmD---------G~eLLe 80 (663)
|..-+|+=|.+ .....+...+++.|.... .+ ....+-++.+.+....+..++. + + +.. -.+.++
T Consensus 115 GvdgviipDlp~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~gfiy~vs-~-~-G~TG~~~~~~~~~~~~i~ 191 (256)
T TIGR00262 115 GVDGVLVADLPLEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQGFVYLVS-R-A-GVTGARNRAASALNELVK 191 (256)
T ss_pred CCCEEEECCCChHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCCCEEEEE-C-C-CCCCCcccCChhHHHHHH
Confidence 44444454444 344555566666675533 22 2334444444443334555544 2 1 222 355667
Q ss_pred HHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 81 LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 81 ~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
+++...+.||++=.+-...+.+.++.++||+.++.--
T Consensus 192 ~lr~~~~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 192 RLKAYSAKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHhhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 7777667897765555668899999999999998875
No 192
>PRK07695 transcriptional regulator TenI; Provisional
Probab=54.38 E-value=1.2e+02 Score=30.30 Aligned_cols=85 Identities=14% Similarity=0.233 Sum_probs=54.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE-
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL- 114 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MPd-------mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL- 114 (663)
++.+.+++.++... ..|.|++.-..|. ..|++.++.+.....+||+++.+- ..+.+.++++.|++.+.
T Consensus 101 s~~s~e~a~~a~~~---Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~~ipvia~GGI-~~~~~~~~~~~Ga~gvav 176 (201)
T PRK07695 101 SVHSLEEAIQAEKN---GADYVVYGHVFPTDCKKGVPARGLEELSDIARALSIPVIAIGGI-TPENTRDVLAAGVSGIAV 176 (201)
T ss_pred eCCCHHHHHHHHHc---CCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHcCCCEEEE
Confidence 45667776655432 5888887643322 236788887766667999988776 77889999999998862
Q ss_pred ----eCCCCHHHHHHHHHHHH
Q 006057 115 ----LKPVRIEELKNIWQHVV 131 (663)
Q Consensus 115 ----lKPvs~eeL~~~~q~Vl 131 (663)
.+.-++.+....+..++
T Consensus 177 ~s~i~~~~~p~~~~~~~~~~~ 197 (201)
T PRK07695 177 MSGIFSSANPYSKAKRYAESI 197 (201)
T ss_pred EHHHhcCCCHHHHHHHHHHHH
Confidence 33334444444444433
No 193
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=54.10 E-value=79 Score=31.16 Aligned_cols=54 Identities=20% Similarity=0.215 Sum_probs=37.4
Q ss_pred CHHHHHHHHhccCCCcE-EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 006057 74 DGFKLLELVGLEMDLPV-IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (663)
Q Consensus 74 DG~eLLe~Ir~~~dIPV-IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~ 127 (663)
-|++.++.++.....|+ +.+..++...++..+.++||+..++-....++....+
T Consensus 43 ~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~ 97 (210)
T TIGR01163 43 FGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLL 97 (210)
T ss_pred cCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHH
Confidence 57888888886666776 3244445567888899999999877665555554444
No 194
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=53.79 E-value=1.6e+02 Score=26.09 Aligned_cols=93 Identities=22% Similarity=0.184 Sum_probs=52.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQA-ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg-~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
+.+|.+||.++...+. ++..++.+....-. .+.++.+. -...+.||+...- +..-+.++..++. .+.++||
T Consensus 21 ~~~vvvid~d~~~~~~----~~~~~~~~i~gd~~~~~~l~~a~--i~~a~~vv~~~~~-d~~n~~~~~~~r~~~~~~~ii 93 (116)
T PF02254_consen 21 GIDVVVIDRDPERVEE----LREEGVEVIYGDATDPEVLERAG--IEKADAVVILTDD-DEENLLIALLARELNPDIRII 93 (116)
T ss_dssp TSEEEEEESSHHHHHH----HHHTTSEEEES-TTSHHHHHHTT--GGCESEEEEESSS-HHHHHHHHHHHHHHTTTSEEE
T ss_pred CCEEEEEECCcHHHHH----HHhcccccccccchhhhHHhhcC--ccccCEEEEccCC-HHHHHHHHHHHHHHCCCCeEE
Confidence 3578999998865333 33446776653222 23344332 2367888876642 2333445555554 5667777
Q ss_pred EEecCCChHHHHHHHhcCCceEEe
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+... +.+....+..+||+..+.
T Consensus 94 ~~~~--~~~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 94 ARVN--DPENAELLRQAGADHVIS 115 (116)
T ss_dssp EEES--SHHHHHHHHHTT-SEEEE
T ss_pred EEEC--CHHHHHHHHHCCcCEEEC
Confidence 6654 444566667788877653
No 195
>PRK14098 glycogen synthase; Provisional
Probab=53.38 E-value=1e+02 Score=35.36 Aligned_cols=112 Identities=6% Similarity=0.048 Sum_probs=59.5
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 14 GLRVLAVDDD-PTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD-~~~r~iL~~lL~~~gy~V~ta--sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
+.+++|+.+- ...+..|+++.++.+-.|... -+..++..++. ..|+.++--. -+.-|+..++.+ ...+|+
T Consensus 336 ~~~lvivG~G~~~~~~~l~~l~~~~~~~V~~~g~~~~~~~~~~~a----~aDi~l~PS~-~E~~Gl~~lEAm--a~G~pp 408 (489)
T PRK14098 336 DIQLVICGSGDKEYEKRFQDFAEEHPEQVSVQTEFTDAFFHLAIA----GLDMLLMPGK-IESCGMLQMFAM--SYGTIP 408 (489)
T ss_pred CcEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEEecCHHHHHHHHH----hCCEEEeCCC-CCCchHHHHHHH--hCCCCe
Confidence 3566666543 234455565555544333322 23333334443 3577765321 223344444433 345566
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|+...-.-.+.+......+..+|+..|.+.++|..++.+++.
T Consensus 409 Vv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l~ 450 (489)
T PRK14098 409 VAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEALA 450 (489)
T ss_pred EEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHHH
Confidence 654332222333333334678999999999999999988764
No 196
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=52.55 E-value=1.8e+02 Score=32.24 Aligned_cols=107 Identities=17% Similarity=0.216 Sum_probs=65.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCC-C--CCCH--HHHHHHHhcc
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHM-P--DMDG--FKLLELVGLE 85 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy--~V~tas--dg~EALelLre~k~~pDLVIlDv~M-P--dmDG--~eLLe~Ir~~ 85 (663)
+++.||.+-+. +..++++++..+. .|.... +.++..+++.. .|+.++-... + +.+| ..+++.+.
T Consensus 254 ~~l~ivG~G~~-~~~l~~~~~~~~l~~~V~~~G~~~~~el~~~l~~----aDv~v~pS~~~~~g~~Eg~p~~llEAma-- 326 (406)
T PRK15427 254 FRYRILGIGPW-ERRLRTLIEQYQLEDVVEMPGFKPSHEVKAMLDD----ADVFLLPSVTGADGDMEGIPVALMEAMA-- 326 (406)
T ss_pred EEEEEEECchh-HHHHHHHHHHcCCCCeEEEeCCCCHHHHHHHHHh----CCEEEECCccCCCCCccCccHHHHHHHh--
Confidence 56666766553 4556666666553 244332 33455555542 4777763322 1 1244 45566553
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
..+|||.- ... .+.+.+..|.++++..|-+.++|.+++..++.
T Consensus 327 ~G~PVI~t-~~~---g~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 327 VGIPVVST-LHS---GIPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCCCEEEe-CCC---CchhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46898753 322 24556778999999999999999999998876
No 197
>PRK04302 triosephosphate isomerase; Provisional
Probab=52.49 E-value=2.2e+02 Score=28.98 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=48.4
Q ss_pred HhCCCEEEEE-CCHHHHHHHHHhcCCCceEEEEeC-C-CC---C-----CCH-HHHHHHHhcc-CCCcEEEEecCCChHH
Q 006057 35 RRCQYHVTTT-SQAITALKLLRENKNKFDLVISDV-H-MP---D-----MDG-FKLLELVGLE-MDLPVIMLSGNGDPKL 101 (663)
Q Consensus 35 ~~~gy~V~ta-sdg~EALelLre~k~~pDLVIlDv-~-MP---d-----mDG-~eLLe~Ir~~-~dIPVIILSA~~d~e~ 101 (663)
.+.|..+..| .+.+++.. +.+ ..+|+|-..- . +. + ..+ .++++.++.. .++|||.-.+-...+.
T Consensus 111 ~~~Gl~~I~~v~~~~~~~~-~~~--~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~~~~pvi~GggI~~~e~ 187 (223)
T PRK04302 111 KKLGLESVVCVNNPETSAA-AAA--LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVNPDVKVLCGAGISTGED 187 (223)
T ss_pred HHCCCeEEEEcCCHHHHHH-Hhc--CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhccCCCEEEEECCCCCHHH
Confidence 3457766544 44444443 433 2567665421 1 10 0 112 2344566653 4789998888888899
Q ss_pred HHHHHhcCCceEEeCC
Q 006057 102 VMKGITHGACDYLLKP 117 (663)
Q Consensus 102 v~kAl~aGA~DYLlKP 117 (663)
+.++++.||+++++--
T Consensus 188 ~~~~~~~gadGvlVGs 203 (223)
T PRK04302 188 VKAALELGADGVLLAS 203 (223)
T ss_pred HHHHHcCCCCEEEEeh
Confidence 9999999999987654
No 198
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=52.29 E-value=1.1e+02 Score=30.72 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=46.6
Q ss_pred EEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE--eCCCCHHHHHHHHHHH
Q 006057 63 LVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL--LKPVRIEELKNIWQHV 130 (663)
Q Consensus 63 LVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL--lKPvs~eeL~~~~q~V 130 (663)
|-++|...--...++.++.++...++||++...-.+...+..++++||+..+ ..-+..++++..++..
T Consensus 48 l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 48 ISVLTEPKYFQGSLEDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEEEeCccccCCCHHHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 4444554444456678888877678999986544566678999999999997 3334446666666555
No 199
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=52.16 E-value=2.1e+02 Score=31.57 Aligned_cols=98 Identities=12% Similarity=0.112 Sum_probs=63.6
Q ss_pred EEEEEeC----CHHHHHHHHHHHHhCCCE-EE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----------CC--H
Q 006057 16 RVLAVDD----DPTCLLLLETLLRRCQYH-VT--TTSQAITALKLLRENKNKFDLVISDVHMPD-----------MD--G 75 (663)
Q Consensus 16 RVLIVDD----D~~~r~iL~~lL~~~gy~-V~--tasdg~EALelLre~k~~pDLVIlDv~MPd-----------mD--G 75 (663)
.++++|- .....+.++.+-+..... |. .+.+.+.|..++.. ..|.|.+-+.-.. .- +
T Consensus 110 d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~a---Gad~I~V~~G~G~~~~tr~~~g~g~~~~~ 186 (321)
T TIGR01306 110 EYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENA---GADATKVGIGPGKVCITKIKTGFGTGGWQ 186 (321)
T ss_pred CEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHc---CcCEEEECCCCCccccceeeeccCCCchH
Confidence 6777775 244555566555554322 22 24577888777764 4677765431111 11 3
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+..+..++...++|||.-.+-.....+.+|+.+||+...+-
T Consensus 187 l~ai~ev~~a~~~pVIadGGIr~~~Di~KALa~GAd~Vmig 227 (321)
T TIGR01306 187 LAALRWCAKAARKPIIADGGIRTHGDIAKSIRFGASMVMIG 227 (321)
T ss_pred HHHHHHHHHhcCCeEEEECCcCcHHHHHHHHHcCCCEEeec
Confidence 44555666666799999999899999999999999988765
No 200
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=51.89 E-value=1.1e+02 Score=34.09 Aligned_cols=71 Identities=15% Similarity=0.190 Sum_probs=48.7
Q ss_pred ceEEEEeCCCCCCCHHHHH-HHHhccCCCcEEEEe-cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 61 FDLVISDVHMPDMDGFKLL-ELVGLEMDLPVIMLS-GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 61 pDLVIlDv~MPdmDG~eLL-e~Ir~~~dIPVIILS-A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.+.+|++..-+..--+|-+ ..+. .....||... ...+...+...++.|+++.+++|-++.+++.....+-+
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~-~~~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQ-GSSTKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhc-CCCceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 5777777765555555533 3332 2344555443 33455677889999999999999999999988776654
No 201
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=51.59 E-value=2.1e+02 Score=29.93 Aligned_cols=57 Identities=14% Similarity=0.221 Sum_probs=33.8
Q ss_pred HHHHHHHHhccCCCcEEEEecC----CChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 75 GFKLLELVGLEMDLPVIMLSGN----GDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~----~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
+..+++.+ ...+|||++... .......+.+..+-.+++..+- +.++|.+++..++..
T Consensus 262 ~~t~~Eam--~~G~Pvv~~~~~~~~~~~~~~~~~~l~~~g~g~~v~~~~~~~~~l~~~i~~ll~~ 324 (350)
T cd03785 262 ASTVAELA--ALGLPAILIPLPYAADDHQTANARALVKAGAAVLIPQEELTPERLAAALLELLSD 324 (350)
T ss_pred HhHHHHHH--HhCCCEEEeecCCCCCCcHHHhHHHHHhCCCEEEEecCCCCHHHHHHHHHHHhcC
Confidence 34444544 356898876421 2222222333334467888775 899999999888753
No 202
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=51.54 E-value=1.4e+02 Score=31.83 Aligned_cols=111 Identities=14% Similarity=0.118 Sum_probs=62.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTS---QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tas---dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI 88 (663)
.++++||.+-+. ++.++++.+..+. .|.... +..+.+..+.. ..|++++--. -+.=|+.+++.+. ..+
T Consensus 210 ~~~l~ivG~g~~-~~~l~~~~~~~~l~~~v~f~G~~~~~~~~~~~~~~---~~d~~v~~s~-~Egf~~~~lEAma--~G~ 282 (359)
T PRK09922 210 EWQLHIIGDGSD-FEKCKAYSRELGIEQRIIWHGWQSQPWEVVQQKIK---NVSALLLTSK-FEGFPMTLLEAMS--YGI 282 (359)
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCCCeEEEecccCCcHHHHHHHHh---cCcEEEECCc-ccCcChHHHHHHH--cCC
Confidence 456666655543 3445555554432 344332 22232222211 2466654221 1223556666553 468
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|||..-.... ..+.+..|.++++..|-+.++|.+++..++...
T Consensus 283 Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 283 PCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred CEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 9875320222 345677889999999999999999999987654
No 203
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=51.53 E-value=1.9e+02 Score=30.48 Aligned_cols=59 Identities=14% Similarity=0.260 Sum_probs=43.6
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE------EeCCCCHHHHHHHHHHHHHhh
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY------LLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DY------LlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+++++.++...++|||....-.+.+.+.+++.+||+.. +..|.-..+++.-+...++++
T Consensus 220 ~~~i~~i~~~~~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~p~~~~~i~~~l~~~~~~~ 284 (296)
T cd04740 220 LRMVYQVYKAVEIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVDPEAFKEIIEGLEAYLDEE 284 (296)
T ss_pred HHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcChHHHHHHHHHHHHHHHHc
Confidence 46777777666899999998889999999999998754 334655566666666655544
No 204
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=51.28 E-value=1.5e+02 Score=30.86 Aligned_cols=53 Identities=28% Similarity=0.458 Sum_probs=40.8
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC-CceEEe------CCCCHHHHHHHHH
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG-ACDYLL------KPVRIEELKNIWQ 128 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aG-A~DYLl------KPvs~eeL~~~~q 128 (663)
+++++.++....+|||+..+-.+.+.+.+++..| |+..+. +-++.++++..++
T Consensus 188 ~~~~~~i~~~~~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~~ 247 (254)
T TIGR00735 188 LELTKAVSEAVKIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYLA 247 (254)
T ss_pred HHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHHH
Confidence 5778888777789999999999999999999988 887443 3466666665554
No 205
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=51.24 E-value=18 Score=36.39 Aligned_cols=48 Identities=13% Similarity=0.171 Sum_probs=36.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIl 66 (663)
|||||.+..+-..|...|++.|+++..+...+..++.+.. ..||.||+
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iIl 49 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDIEN--MKPDFLMI 49 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHhh--CCCCEEEE
Confidence 8999999999999999999999988876654333333433 25888776
No 206
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=50.90 E-value=1.1e+02 Score=35.62 Aligned_cols=56 Identities=23% Similarity=0.381 Sum_probs=40.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 60 KFDLVISDVHMPDMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eLLe~Ir--~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
.+|+||+ -+.||- +|+..+ ....+||+-+ ..|-.+|| -++.++++..++..++++.
T Consensus 262 ~~DlVIs----iGGDGT-lL~Aar~~~~~~iPILGI-------------N~G~LGFL-t~i~~~e~~~~Le~il~G~ 319 (508)
T PLN02935 262 KVDLVIT----LGGDGT-VLWAASMFKGPVPPVVPF-------------SMGSLGFM-TPFHSEQYRDCLDAILKGP 319 (508)
T ss_pred CCCEEEE----ECCcHH-HHHHHHHhccCCCcEEEE-------------eCCCccee-cccCHHHHHHHHHHHHcCC
Confidence 4788776 577884 444443 2346788754 36778897 5789999999999998754
No 207
>PLN02591 tryptophan synthase
Probab=50.88 E-value=2.3e+02 Score=29.93 Aligned_cols=101 Identities=16% Similarity=0.094 Sum_probs=62.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHhcCCCceEEEEeCCCCC------CCHHHHHHHHhccCC
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTT-T-S-QAITALKLLRENKNKFDLVISDVHMPD------MDGFKLLELVGLEMD 87 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~t-a-s-dg~EALelLre~k~~pDLVIlDv~MPd------mDG~eLLe~Ir~~~d 87 (663)
|+|.|-.......+...+++.|...+. + . ..++-++.+.+....|=-++.=.-.-+ .+-.++++++++..+
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~~~ 189 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFVYLVSSTGVTGARASVSGRVESLLQELKEVTD 189 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhcCC
Confidence 666666666666777777777765442 2 2 223334444443322222221110011 122445777887789
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
+||++=.+-...+.+.++...||++.++-.
T Consensus 190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 190 KPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred CceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 999987788888999999999999999876
No 208
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=50.47 E-value=1.5e+02 Score=31.70 Aligned_cols=86 Identities=16% Similarity=0.079 Sum_probs=55.5
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHhccC--CCcEEEEecCCC
Q 006057 28 LLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHM-----PDMDGFKLLELVGLEM--DLPVIMLSGNGD 98 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~M-----PdmDG~eLLe~Ir~~~--dIPVIILSA~~d 98 (663)
+.++++-+..+..|. .+.+.++|..+... .+|.|.+.-+- .+...++++..++... ++|||.-.+-.+
T Consensus 162 ~~i~~l~~~~~~pvivK~v~s~~~a~~a~~~---G~d~I~v~~~gG~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~ 238 (299)
T cd02809 162 DDLAWLRSQWKGPLILKGILTPEDALRAVDA---GADGIVVSNHGGRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRR 238 (299)
T ss_pred HHHHHHHHhcCCCEEEeecCCHHHHHHHHHC---CCCEEEEcCCCCCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCC
Confidence 344444444443333 34566777655543 57888775432 1234566776665432 699999888889
Q ss_pred hHHHHHHHhcCCceEEeC
Q 006057 99 PKLVMKGITHGACDYLLK 116 (663)
Q Consensus 99 ~e~v~kAl~aGA~DYLlK 116 (663)
...+.+++.+||+...+-
T Consensus 239 ~~d~~kal~lGAd~V~ig 256 (299)
T cd02809 239 GTDVLKALALGADAVLIG 256 (299)
T ss_pred HHHHHHHHHcCCCEEEEc
Confidence 999999999999986543
No 209
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=50.38 E-value=1.6e+02 Score=32.71 Aligned_cols=100 Identities=14% Similarity=0.106 Sum_probs=62.6
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeC-----CC-CCCCH-----
Q 006057 14 GLRVLAVDDD----PTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDV-----HM-PDMDG----- 75 (663)
Q Consensus 14 glRVLIVDDD----~~~r~iL~~lL~~~g-y~V~--tasdg~EALelLre~k~~pDLVIlDv-----~M-PdmDG----- 75 (663)
+..+++||-- ....+.++.+-+.+. ..|. -+.+++.|.+++.. ..|.|.+-+ +- ...+|
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~a---GAD~ikVgiGpGSicttR~~~Gvg~pq 197 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILS---GADIVKVGIGPGSVCTTRTKTGVGYPQ 197 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHc---CCCEEEEcccCCCcccCceeCCCCcCH
Confidence 3567778733 333444444444442 2332 24577788777764 478887662 21 11222
Q ss_pred HHHHHHH---hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 76 FKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 76 ~eLLe~I---r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+..+..+ ....++|||+-.+-.....+.+|+.+||+..++-
T Consensus 198 ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG 241 (343)
T TIGR01305 198 LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVMLG 241 (343)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEEEC
Confidence 3333333 2335799999999999999999999999999887
No 210
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=50.34 E-value=79 Score=32.60 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=50.5
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 47 AITALKLLRENKNKFDLVISDVHMPDM-DG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~MPdm-DG--~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
..+.++.+... .=.++++|+..-++ .| +++++.+.....+|||+-.+-...+.+.+++..||+..+.
T Consensus 148 ~~~~~~~~~~~--~~~li~~di~~~G~~~g~~~~~~~~i~~~~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 148 PEELLRRLAKW--PEELIVLDIDRVGSGQGPDLELLERLAARADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred HHHHHHHHHHh--CCeEEEEEcCccccCCCcCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 55666666543 23589999976442 22 5777777666789999988899999999999999998775
No 211
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.24 E-value=1.1e+02 Score=33.01 Aligned_cols=100 Identities=24% Similarity=0.272 Sum_probs=59.7
Q ss_pred EEEEEe--CCHHHH---HHHHHHHHhCCCEEEEECCHHHHHH-------HHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 16 RVLAVD--DDPTCL---LLLETLLRRCQYHVTTTSQAITALK-------LLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 16 RVLIVD--DD~~~r---~iL~~lL~~~gy~V~tasdg~EALe-------lLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
+|+||- +.+... ..+.+.|++.++++........++. ...+....+|+||+ -+.||- +++..+
T Consensus 7 ~i~iv~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----lGGDGT-~L~aa~ 81 (292)
T PRK03378 7 CIGIVGHPRHPTALTTHEMLYHWLTSKGYEVIVEQQIAHELQLKNVKTGTLAEIGQQADLAIV----VGGDGN-MLGAAR 81 (292)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcCCCCCEEEE----ECCcHH-HHHHHH
Confidence 588873 333333 4455566677888776544322221 00111224788887 577884 444443
Q ss_pred --ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 84 --LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 84 --~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
...++||+-+- .|-.+||. .++++++..+++.++.+.
T Consensus 82 ~~~~~~~Pilgin-------------~G~lGFl~-~~~~~~~~~~l~~i~~g~ 120 (292)
T PRK03378 82 VLARYDIKVIGIN-------------RGNLGFLT-DLDPDNALQQLSDVLEGH 120 (292)
T ss_pred HhcCCCCeEEEEE-------------CCCCCccc-ccCHHHHHHHHHHHHcCC
Confidence 23468887654 35567776 688899999999988654
No 212
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=50.23 E-value=2.4e+02 Score=28.12 Aligned_cols=75 Identities=20% Similarity=0.219 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~ 127 (663)
++..+++.. .|++|+-... +.-|..+++.+. ..+|||+... . ...+.+..+-.+++..+.+.+++.+.+
T Consensus 267 ~~~~~~~~~----~di~i~~~~~-~~~~~~~~Ea~~--~g~pvI~~~~-~---~~~~~~~~~~~g~~~~~~~~~~l~~~i 335 (374)
T cd03801 267 EDLPALYAA----ADVFVLPSLY-EGFGLVLLEAMA--AGLPVVASDV-G---GIPEVVEDGETGLLVPPGDPEALAEAI 335 (374)
T ss_pred hhHHHHHHh----cCEEEecchh-ccccchHHHHHH--cCCcEEEeCC-C---ChhHHhcCCcceEEeCCCCHHHHHHHH
Confidence 444455542 4666654333 334555565543 4678875433 2 233445567889999999999999999
Q ss_pred HHHHHh
Q 006057 128 QHVVRR 133 (663)
Q Consensus 128 q~Vlrr 133 (663)
..++..
T Consensus 336 ~~~~~~ 341 (374)
T cd03801 336 LRLLDD 341 (374)
T ss_pred HHHHcC
Confidence 988654
No 213
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=49.99 E-value=1.8e+02 Score=29.44 Aligned_cols=75 Identities=20% Similarity=0.211 Sum_probs=56.6
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEeCC-CC-CCCHHHHHHHHhccCC
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTS-------QAITALKLLRENKNKFDLVISDVH-MP-DMDGFKLLELVGLEMD 87 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tas-------dg~EALelLre~k~~pDLVIlDv~-MP-dmDG~eLLe~Ir~~~d 87 (663)
|||=|-|...++.++..-+..|.++...+ ++++.++++.+-++.|=+|+.|=. .. ...|-+.++.+..+++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~a~~DPV~VMfDD~G~~g~G~GE~Al~~v~~h~~ 82 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQAPHDPVLVMFDDKGFIGEGPGEQALEYVANHPD 82 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccHHHHHHHHcCCC
Confidence 45557888889999999999898887654 689999999987667777777542 32 3567788888877887
Q ss_pred CcEE
Q 006057 88 LPVI 91 (663)
Q Consensus 88 IPVI 91 (663)
+-|+
T Consensus 83 IeVL 86 (180)
T PF14097_consen 83 IEVL 86 (180)
T ss_pred ceEE
Confidence 7654
No 214
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=49.89 E-value=1.6e+02 Score=33.60 Aligned_cols=56 Identities=9% Similarity=0.055 Sum_probs=36.8
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcC--CCceEEEEeCC
Q 006057 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENK--NKFDLVISDVH 69 (663)
Q Consensus 14 glRVLIVDDD~~---~r~iL~~lL~~~gy~V~tasdg~EALelLre~k--~~pDLVIlDv~ 69 (663)
+.+|.+|+-|+. ..+.++.+-+..+..+..+.++.+..+.+...+ ..+|+||+|.-
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~~~~D~VLIDTA 294 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYVNCVDHILIDTV 294 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhcCCCCEEEEECC
Confidence 578999998864 234555566666766666677766555444321 35899999983
No 215
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=49.44 E-value=2.7e+02 Score=31.11 Aligned_cols=77 Identities=17% Similarity=0.109 Sum_probs=51.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH-HhccCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYH-V-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL-VGLEMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~-V-~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~-Ir~~~dIPVI 91 (663)
.+|..+|-++...+.+++-++..+.. + ....++.+.+.. ...||+|++|- | ..+.+++.. ++....--+|
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~----~~~fD~V~lDP--~-Gs~~~~l~~al~~~~~~gil 154 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE----ERKFDVVDIDP--F-GSPAPFLDSAIRSVKRGGLL 154 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh----cCCCCEEEECC--C-CCcHHHHHHHHHHhcCCCEE
Confidence 37999999999999999888766543 2 344555444422 23699999985 4 445567654 5544445788
Q ss_pred EEecCCC
Q 006057 92 MLSGNGD 98 (663)
Q Consensus 92 ILSA~~d 98 (663)
.+|+.+-
T Consensus 155 yvSAtD~ 161 (382)
T PRK04338 155 CVTATDT 161 (382)
T ss_pred EEEecCc
Confidence 8886554
No 216
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.40 E-value=1.4e+02 Score=34.57 Aligned_cols=101 Identities=21% Similarity=0.194 Sum_probs=63.8
Q ss_pred CCcEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC------CCC-----C
Q 006057 13 SGLRVLAVDDD----PTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHM------PDM-----D 74 (663)
Q Consensus 13 ~glRVLIVDDD----~~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~M------Pdm-----D 74 (663)
.|..+++||-- ....+.++.+=+.+ +..|. -+.+.++|..++.. ..|.|-+-+-- ..- .
T Consensus 238 aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~a---Gad~v~vgig~gsictt~~~~~~~~p 314 (479)
T PRK07807 238 AGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEA---GADIVKVGVGPGAMCTTRMMTGVGRP 314 (479)
T ss_pred hCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHc---CCCEEEECccCCcccccccccCCchh
Confidence 46788888833 33444444444443 23333 46788888888864 47888644322 111 1
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 75 GFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 75 G~eLLe~Ir---~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
-+.++..+. ...++|||.-.+-.....+.+|+.+||+...+-
T Consensus 315 ~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g 359 (479)
T PRK07807 315 QFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIG 359 (479)
T ss_pred HHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeecc
Confidence 234443332 245799999999999999999999999887653
No 217
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=49.28 E-value=1.8e+02 Score=29.97 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=57.1
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHh
Q 006057 31 ETLLRRCQY-HVTTTSQAITALKLLREN-KNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGIT 107 (663)
Q Consensus 31 ~~lL~~~gy-~V~tasdg~EALelLre~-k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~ 107 (663)
...|...+. -|....+.++|++.++.- ...+++| ++-+-.-++++.++.+++. +++- |-.-.-.+.+.+.++++
T Consensus 9 ~~~l~~~~~iaV~r~~~~~~a~~i~~al~~~Gi~~i--Eitl~~~~~~~~I~~l~~~~p~~~-IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 9 EEILRAGPVVPVIVINKLEDAVPLAKALVAGGLPVL--EVTLRTPAALEAIRLIAKEVPEAL-IGAGTVLNPEQLAQAIE 85 (212)
T ss_pred HHHHHHCCEEEEEEcCCHHHHHHHHHHHHHcCCCEE--EEecCCccHHHHHHHHHHHCCCCE-EEEeeccCHHHHHHHHH
Confidence 344555453 455667788887766542 1235544 4445555799999888654 4432 22223345578999999
Q ss_pred cCCceEEeCCCCHHHHHHHH
Q 006057 108 HGACDYLLKPVRIEELKNIW 127 (663)
Q Consensus 108 aGA~DYLlKPvs~eeL~~~~ 127 (663)
+||+..+..-++.+-+..+.
T Consensus 86 aGA~FivsP~~~~~vi~~a~ 105 (212)
T PRK05718 86 AGAQFIVSPGLTPPLLKAAQ 105 (212)
T ss_pred cCCCEEECCCCCHHHHHHHH
Confidence 99987666667774444433
No 218
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=49.09 E-value=79 Score=37.50 Aligned_cols=92 Identities=20% Similarity=0.259 Sum_probs=48.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~dIPVI 91 (663)
++.+.+||.|+...+.++ +.|+.|....- -.+.++.. +-.+.++||+-+.-++.+ ..++..++ ..++++||
T Consensus 423 g~~vvvID~d~~~v~~~~----~~g~~v~~GDat~~~~L~~a--gi~~A~~vvv~~~d~~~n-~~i~~~ar~~~p~~~ii 495 (621)
T PRK03562 423 GVKMTVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESA--GAAKAEVLINAIDDPQTS-LQLVELVKEHFPHLQII 495 (621)
T ss_pred CCCEEEEECCHHHHHHHH----hcCCeEEEEeCCCHHHHHhc--CCCcCCEEEEEeCCHHHH-HHHHHHHHHhCCCCeEE
Confidence 455666676665443332 24565543321 11122222 223567777655333222 33444444 45788887
Q ss_pred EEecCCChHHHHHHHhcCCceEE
Q 006057 92 MLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYL 114 (663)
+-+. +.+...+..+.||+..+
T Consensus 496 aRa~--d~~~~~~L~~~Gad~v~ 516 (621)
T PRK03562 496 ARAR--DVDHYIRLRQAGVEKPE 516 (621)
T ss_pred EEEC--CHHHHHHHHHCCCCEEe
Confidence 6553 45567777888988653
No 219
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=49.04 E-value=1.2e+02 Score=29.72 Aligned_cols=69 Identities=19% Similarity=0.123 Sum_probs=49.2
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCC-------CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 42 TTTSQAITALKLLRENKNKFDLVISDVHMPDM-------DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 42 ~tasdg~EALelLre~k~~pDLVIlDv~MPdm-------DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
..|.+.+++.++.+. .+|.|++--..|.. -|++.++.+.....+||+.+-+-. .+.+.++.+.||+++-
T Consensus 100 ~S~h~~~e~~~a~~~---g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~~pv~AlGGI~-~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 100 ASCHSLEEAREAEEL---GADYVFLGPVFPTSSKPGAPPLGLDGLREIARASPIPVYALGGIT-PENIPELREAGADGVA 175 (180)
T ss_dssp EEESSHHHHHHHHHC---TTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTSSCEEEESS---TTTHHHHHHTT-SEEE
T ss_pred eecCcHHHHHHhhhc---CCCEEEECCccCCCCCccccccCHHHHHHHHHhCCCCEEEEcCCC-HHHHHHHHHcCCCEEE
Confidence 478888887666543 58999987765533 488888888777779999998764 4557788899998864
No 220
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=48.72 E-value=1.9e+02 Score=31.26 Aligned_cols=66 Identities=20% Similarity=0.155 Sum_probs=44.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 61 pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.|+.++- ..++.-|+.+++.+. ..+|||. |... .+.+.+..|..+++..|.++++|...+..++..
T Consensus 301 adv~v~~-s~~e~~~~~llEAmA--~G~PVIa-s~~~---g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~~ 366 (396)
T cd03818 301 SDVHVYL-TYPFVLSWSLLEAMA--CGCLVVG-SDTA---PVREVITDGENGLLVDFFDPDALAAAVIELLDD 366 (396)
T ss_pred CcEEEEc-CcccccchHHHHHHH--CCCCEEE-cCCC---CchhhcccCCceEEcCCCCHHHHHHHHHHHHhC
Confidence 3555542 235555566666553 4678885 3322 344566778899999999999999999988754
No 221
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=48.43 E-value=84 Score=31.75 Aligned_cols=67 Identities=13% Similarity=0.185 Sum_probs=48.0
Q ss_pred HHHHHHHHHhcCCCce-EEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC-CceEEe
Q 006057 47 AITALKLLRENKNKFD-LVISDVHMPD-MDG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG-ACDYLL 115 (663)
Q Consensus 47 g~EALelLre~k~~pD-LVIlDv~MPd-mDG--~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aG-A~DYLl 115 (663)
..+..+.+.+. .++ +++.|+.--+ ..| +++++.+.....+|||.-.+-.+.+.+.++++.| |++.+.
T Consensus 148 ~~e~~~~~~~~--g~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 148 AEDLAKRFEDA--GVKAIIYTDISRDGTLSGPNVEATRELAAAVPIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred HHHHHHHHHhc--CCCEEEEeeecCcCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 35555555542 356 7777775432 233 6788888766679999988888999999999988 888765
No 222
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.34 E-value=1.7e+02 Score=31.91 Aligned_cols=100 Identities=22% Similarity=0.272 Sum_probs=60.7
Q ss_pred EEEEEeC--CHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHhcCCCceEEEEeCCCCCCC
Q 006057 16 RVLAVDD--DPT---CLLLLETLLRRCQYHVTTTSQAITALKL----------------LRENKNKFDLVISDVHMPDMD 74 (663)
Q Consensus 16 RVLIVDD--D~~---~r~iL~~lL~~~gy~V~tasdg~EALel----------------Lre~k~~pDLVIlDv~MPdmD 74 (663)
+|+||-. .+. ....|...|...+++|.........+.. .......+|+||+ -+.|
T Consensus 7 ~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGD 82 (306)
T PRK03372 7 RVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPDAADGCELVLV----LGGD 82 (306)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhhcccCCCEEEE----EcCC
Confidence 5888732 233 3455666667778888765543222210 0111124677776 5788
Q ss_pred HHHHHHHHh--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 75 GFKLLELVG--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 75 G~eLLe~Ir--~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|- +|+..+ ....+||+-+- .|-.+||.- +.++++..+++.++++.
T Consensus 83 GT-~L~aar~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 129 (306)
T PRK03372 83 GT-ILRAAELARAADVPVLGVN-------------LGHVGFLAE-AEAEDLDEAVERVVDRD 129 (306)
T ss_pred HH-HHHHHHHhccCCCcEEEEe-------------cCCCceecc-CCHHHHHHHHHHHHcCC
Confidence 83 333332 23578988664 366788886 77899999999998764
No 223
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=47.48 E-value=1.6e+02 Score=31.40 Aligned_cols=55 Identities=15% Similarity=0.273 Sum_probs=34.3
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHH---HHHHHhcCCCceEEEEeCC
Q 006057 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITA---LKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 14 glRVLIVDDD~~---~r~iL~~lL~~~gy~V~tasdg~EA---LelLre~k~~pDLVIlDv~ 69 (663)
+.+|.+|+-|.. ....++...+..++.+..+.+..+. ++.+... .++|+||+|.-
T Consensus 103 ~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~-~~~D~ViIDt~ 163 (270)
T PRK06731 103 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEE-ARVDYILIDTA 163 (270)
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhc-CCCCEEEEECC
Confidence 457888877653 3444555555668888776665443 3333321 36899999983
No 224
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=47.32 E-value=89 Score=36.86 Aligned_cols=53 Identities=15% Similarity=0.190 Sum_probs=30.8
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 60 KFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+.|+|++-+.-+ .+-..++..+|+ .++++||+-+. +.+...+..+.||+..+.
T Consensus 464 ~A~~vv~~~~d~-~~n~~i~~~~r~~~p~~~IiaRa~--~~~~~~~L~~~Ga~~vv~ 517 (601)
T PRK03659 464 KAEAIVITCNEP-EDTMKIVELCQQHFPHLHILARAR--GRVEAHELLQAGVTQFSR 517 (601)
T ss_pred cCCEEEEEeCCH-HHHHHHHHHHHHHCCCCeEEEEeC--CHHHHHHHHhCCCCEEEc
Confidence 455555543222 223344455543 46778876553 455677788899987763
No 225
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=47.27 E-value=1.4e+02 Score=32.35 Aligned_cols=90 Identities=19% Similarity=0.135 Sum_probs=59.5
Q ss_pred EEEEeCCHHHHHHHHHHHHh----CCCE---EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 006057 17 VLAVDDDPTCLLLLETLLRR----CQYH---VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMD 87 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~----~gy~---V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~d 87 (663)
|||=|++-...-.++..+++ .+|. -+.+++.+++.+++.. .+|+|++|-.-| -++-+.+.. ...
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~a---gaDiImLDNm~~----e~~~~av~~l~~~~ 233 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALEA---GADIIMLDNMSP----EELKEAVKLLGLAG 233 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHc---CCCEEEecCCCH----HHHHHHHHHhccCC
Confidence 67777776655546666654 3542 2468899999999875 599999996444 233333322 233
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceE
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
-.++=.|+.-..+.+......|++.+
T Consensus 234 ~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 234 RALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred ceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 34555788888888888888888765
No 226
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=47.25 E-value=57 Score=31.47 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=44.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC----CHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTS----QAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tas----dg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
..|.+|+|+.......+-|..+|.+.|..|+.|. +.+++ ++ .-|||++-+--+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~---v~----~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSK---VH----DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHH---Hh----hCCEEEEecCCCC
Confidence 3478999999999999999999999999999887 44443 33 3699999887664
No 227
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=47.06 E-value=26 Score=34.73 Aligned_cols=32 Identities=13% Similarity=0.279 Sum_probs=26.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTS 45 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tas 45 (663)
.+||||||.....-..+..+|++.|+++..+.
T Consensus 1 ~~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 1 ATKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred CcEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 37999999888777779999999998777655
No 228
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=47.04 E-value=1.9e+02 Score=30.70 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=31.9
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CH-H---HHHHHHHhcCCCceEEEEeCC
Q 006057 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTS---QA-I---TALKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 14 glRVLIVDDD~~---~r~iL~~lL~~~gy~V~tas---dg-~---EALelLre~k~~pDLVIlDv~ 69 (663)
|.+|+|||-|.. ..+.++.+.+..+..+.... +. . +++..+.. ..+|+||+|.-
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~~~--~~~D~ViIDT~ 163 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKAKA--RNIDVVLIDTA 163 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHHHH--CCCCEEEEeCC
Confidence 578999998853 23445556666675554332 22 2 23333332 36999999983
No 229
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=46.66 E-value=1.7e+02 Score=30.03 Aligned_cols=99 Identities=21% Similarity=0.258 Sum_probs=60.7
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeC------CCCCCCHHHHHHHH
Q 006057 14 GLRVLAVDDD----PTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDV------HMPDMDGFKLLELV 82 (663)
Q Consensus 14 glRVLIVDDD----~~~r~iL~~lL~~~gy-~V~tasdg~EALelLre~k~~pDLVIlDv------~MPdmDG~eLLe~I 82 (663)
|-.|+.+|-- |..+..+-..++..+. -..-+.+.+|++...+- .+|+|=.=+ ...+..-|+|++.+
T Consensus 64 GadIIAlDaT~R~Rp~~l~~li~~i~~~~~l~MADist~ee~~~A~~~---G~D~I~TTLsGYT~~t~~~~pD~~lv~~l 140 (192)
T PF04131_consen 64 GADIIALDATDRPRPETLEELIREIKEKYQLVMADISTLEEAINAAEL---GFDIIGTTLSGYTPYTKGDGPDFELVREL 140 (192)
T ss_dssp T-SEEEEE-SSSS-SS-HHHHHHHHHHCTSEEEEE-SSHHHHHHHHHT---T-SEEE-TTTTSSTTSTTSSHHHHHHHHH
T ss_pred CCCEEEEecCCCCCCcCHHHHHHHHHHhCcEEeeecCCHHHHHHHHHc---CCCEEEcccccCCCCCCCCCCCHHHHHHH
Confidence 4567777743 2223333333444332 23367899999988764 589887643 11234568899888
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 83 r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
... .+|||.=-....++.+.+|+++||+..++-
T Consensus 141 ~~~-~~pvIaEGri~tpe~a~~al~~GA~aVVVG 173 (192)
T PF04131_consen 141 VQA-DVPVIAEGRIHTPEQAAKALELGAHAVVVG 173 (192)
T ss_dssp HHT-TSEEEEESS--SHHHHHHHHHTT-SEEEE-
T ss_pred HhC-CCcEeecCCCCCHHHHHHHHhcCCeEEEEC
Confidence 654 899888788889999999999999988764
No 230
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=46.56 E-value=1.4e+02 Score=38.27 Aligned_cols=108 Identities=14% Similarity=0.190 Sum_probs=72.5
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHH-HHHHHhcc
Q 006057 15 LRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMP-DMDGFK-LLELVGLE 85 (663)
Q Consensus 15 lRVLIV----DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MP-dmDG~e-LLe~Ir~~ 85 (663)
-+|++. |-|.+-..++.-+|+..||+|+... ..++.++.+++. ++|+|-+-.-|. .+..+. +++.++..
T Consensus 733 gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa~e~--~~diVgLS~Lmt~t~~~m~~vi~~L~~~ 810 (1178)
T TIGR02082 733 GKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAAKDH--NADVIGLSGLITPSLDEMKEVAEEMNRR 810 (1178)
T ss_pred CeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcccccHHHHHHHHHHHHhc
Confidence 477777 7778888899999999999998654 467777787765 799999987764 444443 45666543
Q ss_pred -CCCcEEEEecCCChHHHHHH---HhcCCceEEeCCCCHHHHH
Q 006057 86 -MDLPVIMLSGNGDPKLVMKG---ITHGACDYLLKPVRIEELK 124 (663)
Q Consensus 86 -~dIPVIILSA~~d~e~v~kA---l~aGA~DYLlKPvs~eeL~ 124 (663)
.++||++-.+......+..- ...||+.|-.-....-++.
T Consensus 811 g~~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~~av~~~ 853 (1178)
T TIGR02082 811 GITIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDASRAVTVM 853 (1178)
T ss_pred CCCceEEEeccccchhHHHhhhhhhccCCeEEecCHHHHHHHH
Confidence 46787776655555554321 2238888876655444443
No 231
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.50 E-value=1.1e+02 Score=31.87 Aligned_cols=68 Identities=13% Similarity=0.182 Sum_probs=50.2
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCC-CH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDM-DG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdm-DG--~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.+.++.+.+. .--.+|++|+..-++ .| +++++.+.....+|||+-.+-...+.+.++++.|++..++-
T Consensus 151 ~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~~~~li~~l~~~~~ipvi~~GGi~s~edi~~l~~~G~~~vivG 221 (234)
T PRK13587 151 FSFVRQLSDI-PLGGIIYTDIAKDGKMSGPNFELTGQLVKATTIPVIASGGIRHQQDIQRLASLNVHAAIIG 221 (234)
T ss_pred HHHHHHHHHc-CCCEEEEecccCcCCCCccCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEh
Confidence 4445555443 123799999976543 33 66778777667899999888899999999999999998763
No 232
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=46.45 E-value=57 Score=33.31 Aligned_cols=62 Identities=13% Similarity=0.076 Sum_probs=36.9
Q ss_pred EEeCCCCCCCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 006057 65 ISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (663)
Q Consensus 65 IlDv~MPdmDG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~ 127 (663)
++++.+-.-+.+++++.++++ +++ +|-...--+.+.+.+|+++||...+..-++++-++.+.
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~p~~-~vGAGTV~~~e~a~~a~~aGA~FivSP~~~~~v~~~~~ 98 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEFPDL-LVGAGTVLTAEQAEAAIAAGAQFIVSPGFDPEVIEYAR 98 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHHTTS-EEEEES--SHHHHHHHHHHT-SEEEESS--HHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCCC-eeEEEeccCHHHHHHHHHcCCCEEECCCCCHHHHHHHH
Confidence 455556566788888867543 442 33344445778899999999876666656666554444
No 233
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=46.39 E-value=3.4e+02 Score=30.37 Aligned_cols=112 Identities=13% Similarity=0.167 Sum_probs=62.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE-E-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH-HHhccCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYH-V-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE-LVGLEMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~-V-~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe-~Ir~~~dIPVI 91 (663)
-+|..+|-++...+.+++-++..+.. + +...++...+ ......||+|++|- ++ ...+++. .++.-..--+|
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l---~~~~~~fDvIdlDP--fG-s~~~fld~al~~~~~~glL 143 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVL---RYRNRKFHVIDIDP--FG-TPAPFVDSAIQASAERGLL 143 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHH---HHhCCCCCEEEeCC--CC-CcHHHHHHHHHhcccCCEE
Confidence 47999999999999999888766542 3 3334444444 33234699999986 33 3234554 33333344678
Q ss_pred EEecCCChH----HHHHHH-hcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 92 MLSGNGDPK----LVMKGI-THGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~~d~e----~v~kAl-~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.+|+.+... ....|+ ..|+.-.=.+=....-|+-.+..+.+
T Consensus 144 ~vTaTD~~~L~G~~~~~~~rkYga~~~~~~~~~E~glRiLlg~i~r 189 (374)
T TIGR00308 144 LVTATDTSALCGNYPKSCLRKYGANPVKTESCHESALRLLLGFVKR 189 (374)
T ss_pred EEEecccHHhcCCChHHHHHHhCCcccCCcchHHHHHHHHHHHHHH
Confidence 888755433 234444 34544321111233344444444443
No 234
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=46.13 E-value=1.1e+02 Score=32.52 Aligned_cols=56 Identities=20% Similarity=0.197 Sum_probs=40.7
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhc--c--CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 60 KFDLVISDVHMPDMDGFKLLELVGL--E--MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eLLe~Ir~--~--~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
.+|+||+ -+.||- +|+.++. . .++||+-+- .|-.+||. .++++++...+..++++.
T Consensus 35 ~~Dlvi~----iGGDGT-~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 94 (265)
T PRK04885 35 NPDIVIS----VGGDGT-LLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAKDP 94 (265)
T ss_pred CCCEEEE----ECCcHH-HHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHcCC
Confidence 5798887 577883 4444432 2 478887554 57789999 688999999999988754
No 235
>PRK13566 anthranilate synthase; Provisional
Probab=45.91 E-value=48 Score=40.16 Aligned_cols=78 Identities=26% Similarity=0.354 Sum_probs=49.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe--CCCCC-CCHHHHHHHHhccCCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISD--VHMPD-MDGFKLLELVGLEMDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlD--v~MPd-mDG~eLLe~Ir~~~dIP 89 (663)
.|+||||||........|..+|++.|++|+.+..... .+.+.. ..||.||+- -..|. ..-.++++.+ ...++|
T Consensus 525 ~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~~~--~~~DgVVLsgGpgsp~d~~~~~lI~~a-~~~~iP 600 (720)
T PRK13566 525 EGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEMLDR--VNPDLVVLSPGPGRPSDFDCKATIDAA-LARNLP 600 (720)
T ss_pred CCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHhhh--cCCCEEEECCCCCChhhCCcHHHHHHH-HHCCCc
Confidence 4789999999988888999999999999887654432 122222 258987761 11121 1222333332 234689
Q ss_pred EEEEe
Q 006057 90 VIMLS 94 (663)
Q Consensus 90 VIILS 94 (663)
|+-+.
T Consensus 601 ILGIC 605 (720)
T PRK13566 601 IFGVC 605 (720)
T ss_pred EEEEe
Confidence 88765
No 236
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=45.90 E-value=39 Score=34.39 Aligned_cols=53 Identities=30% Similarity=0.401 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy--~V~-tasdg~EALelLre~k~~pDLVIlDv 68 (663)
-+|++||-|.....+|++-++.++. ++. ...++..++..+... ..||+|++|=
T Consensus 67 ~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~-~~FDlVflDP 122 (187)
T COG0742 67 ARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTR-EPFDLVFLDP 122 (187)
T ss_pred ceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCC-CcccEEEeCC
Confidence 4799999999999999999988772 333 445666666665532 2499999985
No 237
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=45.54 E-value=2.8e+02 Score=29.75 Aligned_cols=108 Identities=16% Similarity=0.159 Sum_probs=66.7
Q ss_pred cEEEEEeC---CH-HHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006057 15 LRVLAVDD---DP-TCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM 86 (663)
Q Consensus 15 lRVLIVDD---D~-~~r~iL~~lL~~~gy--~V~tas--dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~ 86 (663)
++++||.+ +- .....++++.+..+. .|.... ..++..+++. ..|+.++-.. .+.-|+.+++.+. .
T Consensus 253 ~~l~ivG~~~~~g~~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~l~----~ad~~v~ps~-~E~~g~~~lEAma--~ 325 (405)
T TIGR03449 253 LRVIVVGGPSGSGLATPDALIELAAELGIADRVRFLPPRPPEELVHVYR----AADVVAVPSY-NESFGLVAMEAQA--C 325 (405)
T ss_pred eEEEEEeCCCCCcchHHHHHHHHHHHcCCCceEEECCCCCHHHHHHHHH----hCCEEEECCC-CCCcChHHHHHHH--c
Confidence 56677753 11 334556666666553 354433 3345555554 3577776432 3444666776653 4
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 87 dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.+|||.... .. ..+.+..|..+++..|-+.++|.+++..++..
T Consensus 326 G~Pvi~~~~-~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~~l~~ 368 (405)
T TIGR03449 326 GTPVVAARV-GG---LPVAVADGETGLLVDGHDPADWADALARLLDD 368 (405)
T ss_pred CCCEEEecC-CC---cHhhhccCCceEECCCCCHHHHHHHHHHHHhC
Confidence 689986433 22 33456678899999999999999999888753
No 238
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=45.33 E-value=2e+02 Score=31.18 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=33.2
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.++.+.|++..++|||+.....+.+.+.++++.|.+|++.
T Consensus 281 ~~~~~~ik~~v~iPVi~~G~i~t~~~a~~~l~~g~aD~V~ 320 (338)
T cd04733 281 LEFAEKIRKVTKTPLMVTGGFRTRAAMEQALASGAVDGIG 320 (338)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCCCeee
Confidence 4666778777789999988888899999999999888753
No 239
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=45.12 E-value=1.6e+02 Score=31.23 Aligned_cols=83 Identities=14% Similarity=0.191 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCC----CC---CCHHHHHHHHhccCCCcEEEEecCC-C-----hHHHHHHHhcCCce-
Q 006057 47 AITALKLLRENKNKFDLVISDVHM----PD---MDGFKLLELVGLEMDLPVIMLSGNG-D-----PKLVMKGITHGACD- 112 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~M----Pd---mDG~eLLe~Ir~~~dIPVIILSA~~-d-----~e~v~kAl~aGA~D- 112 (663)
...|++.+++. ...+|+||..-. |. .--+..+..+++..++||++-+.+. . ......|+..||++
T Consensus 148 ~~~Ave~i~~~-Gn~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl 226 (260)
T TIGR01361 148 WLYAAEYILSS-GNGNVILCERGIRTFEKATRNTLDLSAVPVLKKETHLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGL 226 (260)
T ss_pred HHHHHHHHHHc-CCCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhhCCCEEEcCCCCCCccchHHHHHHHHHHcCCCEE
Confidence 45577777764 356899998622 21 1123344555655689999845442 2 34566789999998
Q ss_pred EEeCCC-------------CHHHHHHHHHHH
Q 006057 113 YLLKPV-------------RIEELKNIWQHV 130 (663)
Q Consensus 113 YLlKPv-------------s~eeL~~~~q~V 130 (663)
+|-|-+ ++++|+..++.+
T Consensus 227 ~iE~H~t~d~a~~D~~~sl~p~~l~~lv~~i 257 (260)
T TIGR01361 227 MIEVHPDPEKALSDSKQQLTPEEFKRLVKEL 257 (260)
T ss_pred EEEeCCCccccCCcchhcCCHHHHHHHHHHH
Confidence 666643 456666665543
No 240
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=44.94 E-value=3.7e+02 Score=27.98 Aligned_cols=109 Identities=20% Similarity=0.287 Sum_probs=62.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECC--HHHHHHHHHhcCCCceEEEEeCCC-C----CCCHHHHHHHHhc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQ--YHVTTTSQ--AITALKLLRENKNKFDLVISDVHM-P----DMDGFKLLELVGL 84 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~g--y~V~tasd--g~EALelLre~k~~pDLVIlDv~M-P----dmDG~eLLe~Ir~ 84 (663)
.++++||.+.+. ...++.+....+ ..|..... .++..+++.. .|++++-... + +.-|..+++.+.
T Consensus 219 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~l~~~~~~----ad~~v~ps~~~~~~~~E~~~~~~~EA~a- 292 (367)
T cd05844 219 EVRLVIIGDGPL-LAALEALARALGLGGRVTFLGAQPHAEVRELMRR----ARIFLQPSVTAPSGDAEGLPVVLLEAQA- 292 (367)
T ss_pred CeEEEEEeCchH-HHHHHHHHHHcCCCCeEEECCCCCHHHHHHHHHh----CCEEEECcccCCCCCccCCchHHHHHHH-
Confidence 356666665542 234555555533 23443322 2444445542 4666653221 1 123566666653
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
..+|||.- .... ..+.+..|..+++..|-+.++|..++..++..
T Consensus 293 -~G~PvI~s-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 336 (367)
T cd05844 293 -SGVPVVAT-RHGG---IPEAVEDGETGLLVPEGDVAALAAALGRLLAD 336 (367)
T ss_pred -cCCCEEEe-CCCC---chhheecCCeeEEECCCCHHHHHHHHHHHHcC
Confidence 46898853 2222 33455677789999999999999999888753
No 241
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=44.92 E-value=27 Score=34.59 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=46.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC-CC-CCCCH--HHHHHHHhccCCCcEEE
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV-HM-PDMDG--FKLLELVGLEMDLPVIM 92 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv-~M-PdmDG--~eLLe~Ir~~~dIPVII 92 (663)
|||||....+-..|..+|++.|++|..+....-.++.+... .||.||+-= -+ |..++ ..+++.+ ...+||+-
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~~~~--~~~~iilsgGP~~~~~~~~~~~~i~~~--~~~~PiLG 77 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDIEQL--APSHLVISPGPCTPNEAGISLAVIRHF--ADKLPILG 77 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHhc--CCCeEEEcCCCCChHhCCCchHHHHHh--cCCCCEEE
Confidence 89999999999999999999999888766442222334332 578776622 11 22222 2333332 34689887
Q ss_pred Ee
Q 006057 93 LS 94 (663)
Q Consensus 93 LS 94 (663)
+.
T Consensus 78 IC 79 (191)
T PRK06774 78 VC 79 (191)
T ss_pred EC
Confidence 65
No 242
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=44.86 E-value=27 Score=37.16 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=40.8
Q ss_pred HHHHHHHHh-ccCCCcEEEEecC------CChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 006057 75 GFKLLELVG-LEMDLPVIMLSGN------GDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (663)
Q Consensus 75 G~eLLe~Ir-~~~dIPVIILSA~------~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q 128 (663)
.+++++.++ ...++|+|+|+=. .-...+.+|-++|+++.|+-.+..++-.....
T Consensus 74 ~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~ 134 (259)
T PF00290_consen 74 IFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELRE 134 (259)
T ss_dssp HHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHH
T ss_pred HHHHHHHHhccCCCCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHH
Confidence 467777787 7789999999853 34457888889999999999988876654443
No 243
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=44.76 E-value=3.4e+02 Score=30.56 Aligned_cols=102 Identities=19% Similarity=0.241 Sum_probs=62.7
Q ss_pred HHHHHHhCCCEEEE----ECCHHHHHHHHHhcCCCceEEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEecCCChHH
Q 006057 30 LETLLRRCQYHVTT----TSQAITALKLLRENKNKFDLVISDVH----MPDMDGFKLLELVGLEMDLPVIMLSGNGDPKL 101 (663)
Q Consensus 30 L~~lL~~~gy~V~t----asdg~EALelLre~k~~pDLVIlDv~----MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~ 101 (663)
+.+..++.|..+.. +.+..+.++.+.+. ..|.|.+..- .....+++.++.++...++||++..+- ..+.
T Consensus 99 ~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~--GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~iPI~a~GGI-~~~n 175 (430)
T PRK07028 99 AVRAARKYGVRLMADLINVPDPVKRAVELEEL--GVDYINVHVGIDQQMLGKDPLELLKEVSEEVSIPIAVAGGL-DAET 175 (430)
T ss_pred HHHHHHHcCCEEEEEecCCCCHHHHHHHHHhc--CCCEEEEEeccchhhcCCChHHHHHHHHhhCCCcEEEECCC-CHHH
Confidence 33444456655443 23433433333332 4788866531 112456788888876667999877665 5677
Q ss_pred HHHHHhcCCceE-----EeCCCCHHHHHHHHHHHHHhh
Q 006057 102 VMKGITHGACDY-----LLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 102 v~kAl~aGA~DY-----LlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+.+++++||+.+ |.+.-++.+....++..+++.
T Consensus 176 ~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~~~ 213 (430)
T PRK07028 176 AAKAVAAGADIVIVGGNIIKSADVTEAARKIREAIDSG 213 (430)
T ss_pred HHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHhcc
Confidence 889999999965 555667777777777666553
No 244
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=44.71 E-value=2.3e+02 Score=28.28 Aligned_cols=68 Identities=21% Similarity=0.137 Sum_probs=44.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~--V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
+|..||.++...+.+++-++..++. +. ...+..+++..+......+|+|++|=-.....--++++.+.
T Consensus 74 ~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~DPPy~~~~~~~~l~~l~ 144 (189)
T TIGR00095 74 VAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLDPPFFNGALQALLELCE 144 (189)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEECcCCCCCcHHHHHHHHH
Confidence 7999999999999999988877653 33 45566666654432222479999986443333344555553
No 245
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=44.53 E-value=2.3e+02 Score=28.97 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=47.3
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHH
Q 006057 47 AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNI 126 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~ 126 (663)
..+...++. ..|++++-....+.-|+.+++.+. ..+|||.--. . ...+.+..|..+|+..+ .++|...
T Consensus 234 ~~~~~~~~~----~~d~~v~ps~~~E~~~~~~lEAma--~G~PvI~~~~-~---~~~e~i~~~~~g~l~~~--~~~l~~~ 301 (335)
T cd03802 234 GAEKAELLG----NARALLFPILWEEPFGLVMIEAMA--CGTPVIAFRR-G---AVPEVVEDGVTGFLVDS--VEELAAA 301 (335)
T ss_pred HHHHHHHHH----hCcEEEeCCcccCCcchHHHHHHh--cCCCEEEeCC-C---CchhheeCCCcEEEeCC--HHHHHHH
Confidence 344455554 357777755444556777777664 4578885322 2 23345667888999988 8899888
Q ss_pred HHHHH
Q 006057 127 WQHVV 131 (663)
Q Consensus 127 ~q~Vl 131 (663)
+..+.
T Consensus 302 l~~l~ 306 (335)
T cd03802 302 VARAD 306 (335)
T ss_pred HHHHh
Confidence 87764
No 246
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=44.39 E-value=91 Score=36.23 Aligned_cols=101 Identities=14% Similarity=0.057 Sum_probs=60.5
Q ss_pred CCcEEEEEeCCHHH----HHHHHHHHHhCC--CEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC--------------
Q 006057 13 SGLRVLAVDDDPTC----LLLLETLLRRCQ--YHVTT--TSQAITALKLLRENKNKFDLVISDVHM-------------- 70 (663)
Q Consensus 13 ~glRVLIVDDD~~~----r~iL~~lL~~~g--y~V~t--asdg~EALelLre~k~~pDLVIlDv~M-------------- 70 (663)
+|..+++||--+-. .+.++.+-..++ ..|.. +.+.+.|..++.. ..|.|.+-++-
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~a---GAd~I~vg~g~Gs~c~tr~~~~~g~ 329 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEA---GADFVKVGIGGGSICITREQKGIGR 329 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHc---CCCEEEECCCCCcCcccccccCCCc
Confidence 46777877743332 444555444443 33433 5677777777764 46887663322
Q ss_pred CCCCHHHHH-HHHhc-----cCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 71 PDMDGFKLL-ELVGL-----EMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 71 PdmDG~eLL-e~Ir~-----~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
|..+.+.-+ +..+. ...+|||+-.+-.....+.+|+.+||+..++-
T Consensus 330 ~~~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 330 GQATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cHHHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeC
Confidence 222222212 21111 12489999999988999999999999987653
No 247
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=44.29 E-value=68 Score=34.38 Aligned_cols=54 Identities=15% Similarity=0.284 Sum_probs=40.2
Q ss_pred HHHHHHHh-ccCCCcEEEEecCC------ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHH
Q 006057 76 FKLLELVG-LEMDLPVIMLSGNG------DPKLVMKGITHGACDYLLKPVRIEELKNIWQH 129 (663)
Q Consensus 76 ~eLLe~Ir-~~~dIPVIILSA~~------d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~ 129 (663)
+++++.++ ....+|+|+|+=+. ....+.+|.+.|+++.|+-.+.+++-......
T Consensus 82 lel~~~~r~~~~~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~ 142 (265)
T COG0159 82 LELVEEIRAKGVKVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKA 142 (265)
T ss_pred HHHHHHHHhcCCCCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHH
Confidence 56666666 34789999998543 34467899999999999999888877644433
No 248
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=44.24 E-value=2.2e+02 Score=29.39 Aligned_cols=79 Identities=23% Similarity=0.320 Sum_probs=52.3
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCC-CCCCH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhc-CCceEEe------C
Q 006057 48 ITALKLLRENKNKFD-LVISDVHM-PDMDG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH-GACDYLL------K 116 (663)
Q Consensus 48 ~EALelLre~k~~pD-LVIlDv~M-PdmDG--~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~a-GA~DYLl------K 116 (663)
.+....+.+. .++ +++.|+.- .-+.| +++++.++....+|||+-.+-.+.+.+.++++. ||++.+. .
T Consensus 156 ~~~~~~~~~~--g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~ 233 (253)
T PRK02083 156 VEWAKEVEEL--GAGEILLTSMDRDGTKNGYDLELTRAVSDAVNVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFG 233 (253)
T ss_pred HHHHHHHHHc--CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcC
Confidence 3444444432 455 66756542 11222 677787776678999998888888899999875 9988766 4
Q ss_pred CCCHHHHHHHHH
Q 006057 117 PVRIEELKNIWQ 128 (663)
Q Consensus 117 Pvs~eeL~~~~q 128 (663)
-++.++++..++
T Consensus 234 ~~~~~~~~~~~~ 245 (253)
T PRK02083 234 EITIGELKAYLA 245 (253)
T ss_pred CCCHHHHHHHHH
Confidence 466777766554
No 249
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=44.23 E-value=3.7e+02 Score=28.49 Aligned_cols=56 Identities=14% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHHHHHHhccCCCcEEEEec----CCChHHHHHHHhcCCceEEeCCCC--HHHHHHHHHHHHHh
Q 006057 76 FKLLELVGLEMDLPVIMLSG----NGDPKLVMKGITHGACDYLLKPVR--IEELKNIWQHVVRR 133 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA----~~d~e~v~kAl~aGA~DYLlKPvs--~eeL~~~~q~Vlrr 133 (663)
..+++.+ ...+|||++.. ..+.....+.+..+-.++++.|-+ +++|.+.+..++..
T Consensus 263 ~~~~Ea~--~~g~Pvv~~~~~~~~~~~~~~~~~~i~~~~~g~~~~~~~~~~~~l~~~i~~ll~~ 324 (357)
T PRK00726 263 STVAELA--AAGLPAILVPLPHAADDHQTANARALVDAGAALLIPQSDLTPEKLAEKLLELLSD 324 (357)
T ss_pred HHHHHHH--HhCCCEEEecCCCCCcCcHHHHHHHHHHCCCEEEEEcccCCHHHHHHHHHHHHcC
Confidence 4444544 35689988753 122222233343334577777655 99999999988754
No 250
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=44.12 E-value=1.2e+02 Score=31.37 Aligned_cols=58 Identities=26% Similarity=0.396 Sum_probs=44.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEeCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLREN--KNKFDLVISDVH 69 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~--V~-tasdg~EALelLre~--k~~pDLVIlDv~ 69 (663)
+.+-+|.-+|-++...+..++.++..|+. |. ...++.+.+..+... ...||+|++|..
T Consensus 91 ~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~VfiDa~ 153 (234)
T PLN02781 91 PEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFDFAFVDAD 153 (234)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCCEEEECCC
Confidence 33458999999999999999999988763 33 456788877766432 247999999975
No 251
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=43.96 E-value=1.3e+02 Score=31.97 Aligned_cols=93 Identities=14% Similarity=0.051 Sum_probs=57.1
Q ss_pred EEEEeCCHHHHH------HHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHhcc-C
Q 006057 17 VLAVDDDPTCLL------LLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF-KLLELVGLE-M 86 (663)
Q Consensus 17 VLIVDDD~~~r~------iL~~lL~~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~-eLLe~Ir~~-~ 86 (663)
|||-|++..... .++.+-+... ...+.+.+.++|.+.+.. ..|+|.+|-.-|. ++ ++++.++.. +
T Consensus 155 vlikdnH~~~~g~~~~~~av~~~R~~~~~~~IgVev~t~eea~~A~~~---gaD~I~ld~~~p~--~l~~~~~~~~~~~~ 229 (272)
T cd01573 155 ILVFAEHRAFLGGPEPLKALARLRATAPEKKIVVEVDSLEEALAAAEA---GADILQLDKFSPE--ELAELVPKLRSLAP 229 (272)
T ss_pred eEeehhHHHHhCCchHHHHHHHHHHhCCCCeEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH--HHHHHHHHHhccCC
Confidence 787776643322 2222222222 234578889999888753 5899999965553 22 334444433 4
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 87 DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 87 dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
++|+++.. --..+.+.+..+.|++.+..
T Consensus 230 ~i~i~AsG-GI~~~ni~~~~~~Gvd~I~v 257 (272)
T cd01573 230 PVLLAAAG-GINIENAAAYAAAGADILVT 257 (272)
T ss_pred CceEEEEC-CCCHHHHHHHHHcCCcEEEE
Confidence 67776554 45678888999999988744
No 252
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=43.76 E-value=1.6e+02 Score=30.85 Aligned_cols=104 Identities=16% Similarity=0.213 Sum_probs=62.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~ta--sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
.+++||.+.+.. +.+++ ...-.|... -+.++..+++.. .|++++-.. +.-|+.+++.+. ..+|||.
T Consensus 222 ~~l~ivG~g~~~-~~l~~---~~~~~V~~~g~~~~~~~~~~~~~----ad~~v~ps~--e~~g~~~~Eama--~G~Pvi~ 289 (351)
T cd03804 222 KRLVVIGDGPEL-DRLRA---KAGPNVTFLGRVSDEELRDLYAR----ARAFLFPAE--EDFGIVPVEAMA--SGTPVIA 289 (351)
T ss_pred CcEEEEECChhH-HHHHh---hcCCCEEEecCCCHHHHHHHHHh----CCEEEECCc--CCCCchHHHHHH--cCCCEEE
Confidence 567777766542 23333 112234333 345556666653 577776443 344555665543 4689987
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
..... ..+.+..|.++++..|-+.++|..++..++...
T Consensus 290 ~~~~~----~~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~~ 327 (351)
T cd03804 290 YGKGG----ALETVIDGVTGILFEEQTVESLAAAVERFEKNE 327 (351)
T ss_pred eCCCC----CcceeeCCCCEEEeCCCCHHHHHHHHHHHHhCc
Confidence 54322 234456678899999999999999998887543
No 253
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=43.74 E-value=2.6e+02 Score=31.18 Aligned_cols=102 Identities=16% Similarity=0.233 Sum_probs=64.0
Q ss_pred CCcEEEEEe----CCHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC--------------C
Q 006057 13 SGLRVLAVD----DDPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVHM--------------P 71 (663)
Q Consensus 13 ~glRVLIVD----DD~~~r~iL~~lL~~~g-y~V~--tasdg~EALelLre~k~~pDLVIlDv~M--------------P 71 (663)
++.-+|+|| ......+.++.+-+..+ ..|. -+.+.+.|..++.. ..|.|.+-+-- |
T Consensus 119 agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T~e~a~~L~~a---Gad~vkVGiGpGsiCtTr~v~GvG~P 195 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVTYEGAKDLIDA---GADAVKVGIGPGSICTTREVTGVGVP 195 (352)
T ss_dssp TT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-SHHHHHHHHHT---T-SEEEESSSSSTTBHHHHHHSBSCT
T ss_pred cCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCCHHHHHHHHHc---CCCEEEEeccCCcccccccccccCCc
Confidence 366788998 33445555555544444 3443 56788889988875 48999987632 2
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 72 DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 72 dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
....+--+...+....+|||.=.+-.....+.+|+.+||+..++-.
T Consensus 196 Q~tAv~~~a~~a~~~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~ 241 (352)
T PF00478_consen 196 QLTAVYECAEAARDYGVPIIADGGIRTSGDIVKALAAGADAVMLGS 241 (352)
T ss_dssp HHHHHHHHHHHHHCTTSEEEEESS-SSHHHHHHHHHTT-SEEEEST
T ss_pred HHHHHHHHHHHhhhccCceeecCCcCcccceeeeeeecccceeech
Confidence 1111111223345568999988888889999999999999987654
No 254
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=43.48 E-value=2.9e+02 Score=27.83 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=47.1
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 46 QAITALKLLRENKNKFD-LVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 46 dg~EALelLre~k~~pD-LVIlDv~MPdm---DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+..+.++.+.+. .++ +++.|+..-+. -.+++++.+++...+|||+-.+-.+.+.+.++++.||++.++
T Consensus 147 ~~~~~~~~~~~~--ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 147 SLEELAKRFEEL--GVKAIIYTDISRDGTLSGPNFELYKELAAATGIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCccCCCCHHHHHHHHHhcCCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 344555555543 344 55667643221 236788888777789999988888888899999999999765
No 255
>PRK15320 transcriptional activator SprB; Provisional
Probab=43.41 E-value=73 Score=33.19 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=65.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC--CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 16 RVLAVDDDPTCLLLLETLLRRC--QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~--gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
.|+|-.+.=...-.++.+.++. +..|.+|......+..++. .||.+++=.--|..--+=+-.....-++-||+++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~~---~p~a~lil~l~p~eh~~lf~~l~~~l~~~~v~vv 79 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLSD---MPDAGLILALNPHEHVYLFHALLTRLQNRKVLVV 79 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHhh---CCCceEEEeeCchhHHHHHHHHHHHcCCCceEEE
Confidence 4666677766667788888764 4567788777777777765 5777666444454433333333334567899988
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q 128 (663)
+..-......-..-.|+.+|++| +||..+++
T Consensus 80 ~d~l~~~dr~vl~~~g~~~~~l~----~el~~~~~ 110 (251)
T PRK15320 80 ADRLYYIDRCVLQYFGVMDYVLK----DELSCAIR 110 (251)
T ss_pred ecceeehhhhhhhhhcchhHHHH----HHHHHHhc
Confidence 86554433333334688888776 45555543
No 256
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=43.24 E-value=2e+02 Score=29.01 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=51.3
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC---------CCHHHHHHHHhc--cCCCcEEEEecCCChHHHHH---HHhcCCc
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPD---------MDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMK---GITHGAC 111 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPd---------mDG~eLLe~Ir~--~~dIPVIILSA~~d~e~v~k---Al~aGA~ 111 (663)
+-.+.++.+.. ..+|.|++|++-.. .+-.+++..++. .....+++=....+...+.+ ++..|++
T Consensus 9 ~~~~~~~~a~~--~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~ 86 (221)
T PF03328_consen 9 NSPKMLEKAAA--SGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGAD 86 (221)
T ss_dssp TSHHHHHHHHT--TCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSS
T ss_pred CCHHHHHHHHh--cCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCC
Confidence 33444555543 37999999997754 233344444433 23356666666666667777 9999999
Q ss_pred eEEeCCC-CHHHHHHHHHHH
Q 006057 112 DYLLKPV-RIEELKNIWQHV 130 (663)
Q Consensus 112 DYLlKPv-s~eeL~~~~q~V 130 (663)
++++.=+ +.++++.+++.+
T Consensus 87 gI~lP~ves~~~~~~~~~~~ 106 (221)
T PF03328_consen 87 GIVLPKVESAEDARQAVAAL 106 (221)
T ss_dssp EEEETT--SHHHHHHHHHHH
T ss_pred eeeccccCcHHHHHHHHHHH
Confidence 9876655 567777766554
No 257
>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]
Probab=43.21 E-value=3 Score=41.71 Aligned_cols=122 Identities=22% Similarity=0.220 Sum_probs=80.7
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE----EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006057 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYH----VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (663)
Q Consensus 9 ~~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~----V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~ 84 (663)
..|+..++ +.+|++..++..+..++..+-+. ........+...... ...+|+++-++.||++.++.++..+..
T Consensus 11 ~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (340)
T KOG1601|consen 11 CRFDDLLN-LNADDSLLDISVDARLSASNSLAFPHEPTRLSSSPESFVAAT--SFSIDLSVPSLDMPGLEGFSLFVSENN 87 (340)
T ss_pred cCcccccc-cccccccCCcccccccccccccccccccccccchhhhhhccc--ccccccccccccccccccccccccccc
Confidence 34555555 88888888877777777664221 222222211000000 136899999999999999999876653
Q ss_pred ---cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 85 ---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 85 ---~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
...+|++++............+..++.+|+.+|....++...+.++.+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 139 (340)
T KOG1601|consen 88 PNSLRHPPVPSMPSSNSSSSSSSSVSPSASLELTKPDRKNRLKRSRQHVRVK 139 (340)
T ss_pred CCCCCCCCcccccccccchhhhcccCCcccccccccccCCCcccCCcccccc
Confidence 2356676777666666677888888999999999977777777666543
No 258
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=43.06 E-value=1.8e+02 Score=32.03 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=42.0
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 006057 15 LRVLAVDDDPTCL-----LLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (663)
Q Consensus 15 lRVLIVDDD~~~r-----~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe 80 (663)
-|+|||-|..... +.+...|+..++++..+. ..+++++.+++. ++|+||- +.++.-+++.+
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGSviD~AK 98 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREF--EPDWIIA---LGGGSPIDAAK 98 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCccHHHHHH
Confidence 5899997765443 567778877777665543 245666777754 6898875 56666666666
Q ss_pred HH
Q 006057 81 LV 82 (663)
Q Consensus 81 ~I 82 (663)
.+
T Consensus 99 ~i 100 (375)
T cd08179 99 AM 100 (375)
T ss_pred HH
Confidence 54
No 259
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=42.98 E-value=1e+02 Score=34.30 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=40.5
Q ss_pred CceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 60 KFDLVISDVHMPDMD-GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 60 ~pDLVIlDv~MPdmD-G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.+|+|++|+--.... -++.+++|+....-+.|+-..-...+.+..++++||+...+-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 589999999665433 356778887654334444444667788999999999998654
No 260
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=42.96 E-value=1.4e+02 Score=29.69 Aligned_cols=66 Identities=17% Similarity=0.223 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHhccC---CC-cEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMDG-------FKLLELVGLEM---DL-PVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmDG-------~eLLe~Ir~~~---dI-PVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.+.++.+.. .+|.|+++..-|+.+| ++.+++++... .+ ++|++.+--..+.+.++++.|++.++.-
T Consensus 122 ~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 122 LEPLEDVLD---LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred HHHHHHHHh---hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 444444432 3677777665465544 23333333221 23 4555655556678888888999976543
No 261
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=42.95 E-value=40 Score=35.02 Aligned_cols=39 Identities=18% Similarity=0.325 Sum_probs=33.2
Q ss_pred CCcEEEEec------CCChHHHHHHHhcCCceEEeCCCCHHHHHH
Q 006057 87 DLPVIMLSG------NGDPKLVMKGITHGACDYLLKPVRIEELKN 125 (663)
Q Consensus 87 dIPVIILSA------~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~ 125 (663)
.+|||+|+= +.+..++..+.++||.+||+-.+.++|-..
T Consensus 95 t~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~ 139 (268)
T KOG4175|consen 95 TCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAET 139 (268)
T ss_pred ccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHH
Confidence 589999974 457788999999999999999999988654
No 262
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.67 E-value=3.5e+02 Score=29.31 Aligned_cols=91 Identities=20% Similarity=0.061 Sum_probs=58.7
Q ss_pred EEEEEeCCHHHH--H--HHHHHH----HhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006057 16 RVLAVDDDPTCL--L--LLETLL----RRCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (663)
Q Consensus 16 RVLIVDDD~~~r--~--iL~~lL----~~~gy---~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~ 84 (663)
.|||=|.+-... - .+...+ +..++ ..+.+.+.+++.+.+.. .+|+|++|=.-| -++-+.+..
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~~---gaDiImLDn~s~----e~l~~av~~ 233 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLAA---GVDTIMLDNFSL----DDLREGVEL 233 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHhc---CCCEEEECCCCH----HHHHHHHHH
Confidence 378777775542 1 244444 33443 34578999999998864 589999995333 334333332
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceE
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
-....+|-.|+.-..+.+.+....|++..
T Consensus 234 ~~~~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 234 VDGRAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred hCCCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 22234677888888888888888888754
No 263
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=42.51 E-value=2.6e+02 Score=28.93 Aligned_cols=88 Identities=9% Similarity=-0.004 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCCCEEEEECC---HHHHHHHHHhcCCCceEEEEeCCCCCC------CHHHHHHHHhccC-CCcEEEEecC
Q 006057 27 LLLLETLLRRCQYHVTTTSQ---AITALKLLRENKNKFDLVISDVHMPDM------DGFKLLELVGLEM-DLPVIMLSGN 96 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~tasd---g~EALelLre~k~~pDLVIlDv~MPdm------DG~eLLe~Ir~~~-dIPVIILSA~ 96 (663)
...+...+++.|.++..+-+ ..+.++.+... ...++++ -..|+. +-.+.++++++.. +.||++=.+-
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~--~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v~gGI 194 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKL--SPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVGNKYLVVGFGL 194 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHh--CCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcCCCCEEEeCCc
Confidence 34556666777876553322 23444444332 3466666 444542 1133455555443 5676654555
Q ss_pred CChHHHHHHHhcCCceEEeCC
Q 006057 97 GDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 97 ~d~e~v~kAl~aGA~DYLlKP 117 (663)
...+.+.++.++||+.++.--
T Consensus 195 ~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 195 DSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred CCHHHHHHHHHcCCCEEEECH
Confidence 577888888999999998875
No 264
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=42.25 E-value=1.3e+02 Score=30.90 Aligned_cols=71 Identities=18% Similarity=0.190 Sum_probs=51.5
Q ss_pred ECCHHHHHHHHHhcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 44 TSQAITALKLLRENKNKFD-LVISDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 44 asdg~EALelLre~k~~pD-LVIlDv~MPd---mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
..+..+..+.+.+. .+| |++.|+.--+ ..-+++++.++....+||++-.+-.+.+.+.+++..|++..++-
T Consensus 26 ~~d~~~~a~~~~~~--G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 26 AGDPVELAKRYNEQ--GADELVFLDITASSEGRETMLDVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred CCCHHHHHHHHHHC--CCCEEEEEcCCcccccCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 34777777777654 344 7788887421 12356778887777899999988889999999999998776543
No 265
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=42.17 E-value=89 Score=30.80 Aligned_cols=81 Identities=14% Similarity=0.131 Sum_probs=44.2
Q ss_pred HHHHhCCCEEEE---ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecC
Q 006057 32 TLLRRCQYHVTT---TSQAITALKLLRENKNKFDLVISDVHMPDMDG-------FKLLELVGLE-----MDLPVIMLSGN 96 (663)
Q Consensus 32 ~lL~~~gy~V~t---asdg~EALelLre~k~~pDLVIlDv~MPdmDG-------~eLLe~Ir~~-----~dIPVIILSA~ 96 (663)
+.++..+..+.. +.+..+.++.+.. .+|.|+++-.-|+..| ++.++.+++. +.+||++..+-
T Consensus 98 ~~~~~~g~~~~~~~~~~t~~e~~~~~~~---~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~GGI 174 (210)
T TIGR01163 98 QLIKDLGAKAGIVLNPATPLEFLEYVLP---DVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGV 174 (210)
T ss_pred HHHHHcCCcEEEEECCCCCHHHHHHHHh---hCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCc
Confidence 444444544322 2334555555532 3677777654454443 3334434321 23576554444
Q ss_pred CChHHHHHHHhcCCceEEeC
Q 006057 97 GDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 97 ~d~e~v~kAl~aGA~DYLlK 116 (663)
..+.+.++++.||+.+++-
T Consensus 175 -~~env~~l~~~gad~iivg 193 (210)
T TIGR01163 175 -NDDNARELAEAGADILVAG 193 (210)
T ss_pred -CHHHHHHHHHcCCCEEEEC
Confidence 4678888899999987654
No 266
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=42.17 E-value=1.7e+02 Score=32.34 Aligned_cols=64 Identities=16% Similarity=0.195 Sum_probs=41.5
Q ss_pred CcEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 006057 14 GLRVLAVDDDPTC-----LLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLL 79 (663)
Q Consensus 14 glRVLIVDDD~~~-----r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLL 79 (663)
+-|+|||-|.... .+.+...|+..|+++..+. ...++++.+++. .+|+||- +.+..-+++.
T Consensus 28 ~~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~a 102 (382)
T cd08187 28 GKKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELCKEE--KVDFILA---VGGGSVIDSA 102 (382)
T ss_pred CCEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCChHHHHHH
Confidence 4689999776433 3567788887777665443 345666777664 6899884 4565666666
Q ss_pred HHH
Q 006057 80 ELV 82 (663)
Q Consensus 80 e~I 82 (663)
+.+
T Consensus 103 K~i 105 (382)
T cd08187 103 KAI 105 (382)
T ss_pred HHH
Confidence 544
No 267
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=42.17 E-value=1.5e+02 Score=38.30 Aligned_cols=106 Identities=14% Similarity=0.169 Sum_probs=69.6
Q ss_pred cEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCC-CCCHH-HHHHHHhc-
Q 006057 15 LRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMP-DMDGF-KLLELVGL- 84 (663)
Q Consensus 15 lRVLIV----DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MP-dmDG~-eLLe~Ir~- 84 (663)
-+||+. |-|.+-..++.-+|+..||+|+... ..++.++.+.+. ++|+|.+-.-|. .+..+ ++++.++.
T Consensus 752 gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa~e~--~~diVgLS~L~t~s~~~m~~~i~~L~~~ 829 (1229)
T PRK09490 752 GKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETAKEE--NADIIGLSGLITPSLDEMVHVAKEMERQ 829 (1229)
T ss_pred CeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHh--CCCEEEEcCcchhhHHHHHHHHHHHHhc
Confidence 477777 7778888899999999999998654 467777777765 799999987764 34443 35566654
Q ss_pred cCCCcEEEEecCCChHH-HHHH--HhcCCceEEeCCCCHHH
Q 006057 85 EMDLPVIMLSGNGDPKL-VMKG--ITHGACDYLLKPVRIEE 122 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~-v~kA--l~aGA~DYLlKPvs~ee 122 (663)
..++||++-.+...... ..+. --.||+.|..-.+..-.
T Consensus 830 g~~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA~~~v~ 870 (1229)
T PRK09490 830 GFTIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDASRAVG 870 (1229)
T ss_pred CCCCeEEEEeeccchhhhhhhhhhcccCCcEEecCHHHHHH
Confidence 34788777655444332 1111 11288888665544333
No 268
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=41.80 E-value=2.7e+02 Score=29.20 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=60.8
Q ss_pred EEeCCHHHHHHHHHHHHhCCCEEEE-E----C--CHHHHHHHHHhcCCCceEEEEeCCCCCC--CHHHHHHHHhccC-CC
Q 006057 19 AVDDDPTCLLLLETLLRRCQYHVTT-T----S--QAITALKLLRENKNKFDLVISDVHMPDM--DGFKLLELVGLEM-DL 88 (663)
Q Consensus 19 IVDDD~~~r~iL~~lL~~~gy~V~t-a----s--dg~EALelLre~k~~pDLVIlDv~MPdm--DG~eLLe~Ir~~~-dI 88 (663)
+..|.....++++.+- ..+..|+. . . +..+..+.+.+ ...|.|.+|...++. --++.++.+++.. ++
T Consensus 116 Ll~dp~~l~~iv~av~-~~~~PVsvKiR~~~~~~~~~~~a~~l~~--aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~~i 192 (231)
T TIGR00736 116 LLKNKELLKEFLTKMK-ELNKPIFVKIRGNCIPLDELIDALNLVD--DGFDGIHVDAMYPGKPYADMDLLKILSEEFNDK 192 (231)
T ss_pred hcCCHHHHHHHHHHHH-cCCCcEEEEeCCCCCcchHHHHHHHHHH--cCCCEEEEeeCCCCCchhhHHHHHHHHHhcCCC
Confidence 4445555555555555 33444331 1 1 12233344443 368988889766654 2477888887765 59
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
|||..-.-.+.+.+.+.++.||+...+
T Consensus 193 pIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 193 IIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred cEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 999988888889999999999988754
No 269
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=41.69 E-value=86 Score=30.77 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=34.7
Q ss_pred ceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 61 FDLVISDVHMPDMDG-------FKLLELVGLE-----MDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 61 pDLVIlDv~MPdmDG-------~eLLe~Ir~~-----~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+|.|+++-..|+.+| ++.++.+++. +++||++.-+-. .+.+.++++.||+.++.-
T Consensus 128 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~-~env~~~~~~gad~iivg 194 (211)
T cd00429 128 VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGIN-LETIPLLAEAGADVLVAG 194 (211)
T ss_pred CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHcCCCEEEEC
Confidence 688877765565444 3334444322 247876655444 578889999999988654
No 270
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=41.64 E-value=1.3e+02 Score=31.77 Aligned_cols=58 Identities=19% Similarity=0.347 Sum_probs=44.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEeCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLREN---KNKFDLVISDVH 69 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy--~V~-tasdg~EALelLre~---k~~pDLVIlDv~ 69 (663)
|.+-+|.-+|-++...+.-+..+++.|+ .|. ...++.+.+..+... ...||+|++|..
T Consensus 102 ~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~iFiDad 165 (247)
T PLN02589 102 PEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFDFIFVDAD 165 (247)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcccEEEecCC
Confidence 4456899999999988888999998875 344 557788877766532 247999999986
No 271
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=41.62 E-value=1.7e+02 Score=31.84 Aligned_cols=100 Identities=16% Similarity=0.246 Sum_probs=60.7
Q ss_pred EEEEE--eCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHH----------------HHhcCCCceEEEEeCCCCCCC
Q 006057 16 RVLAV--DDDPT---CLLLLETLLRRCQYHVTTTSQAITALKL----------------LRENKNKFDLVISDVHMPDMD 74 (663)
Q Consensus 16 RVLIV--DDD~~---~r~iL~~lL~~~gy~V~tasdg~EALel----------------Lre~k~~pDLVIlDv~MPdmD 74 (663)
+|.|+ .+.+. ....|.+.|.+.|+++.......+.+.. .......+|+||+ -+.|
T Consensus 3 ~igiv~n~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGD 78 (305)
T PRK02649 3 KAGIIYNDGKPLAVRTAEELQDKLEAAGWEVVRASSSGGILGYANPDQPVCHTGIDQLVPPGFDSSMKFAIV----LGGD 78 (305)
T ss_pred EEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccccccccccccccChhhcccCcCEEEE----EeCc
Confidence 46676 23332 3455666677778888765432222110 0111124678776 5778
Q ss_pred HHHHHHHHhc--cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 75 GFKLLELVGL--EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 75 G~eLLe~Ir~--~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
| .+|+..+. ..++||+-+- .|-.+||.- +.++++...+..++++.
T Consensus 79 G-TlL~aar~~~~~~iPilGIN-------------~G~lGFLt~-~~~~~~~~~l~~l~~g~ 125 (305)
T PRK02649 79 G-TVLSAARQLAPCGIPLLTIN-------------TGHLGFLTE-AYLNQLDEAIDQVLAGQ 125 (305)
T ss_pred H-HHHHHHHHhcCCCCcEEEEe-------------CCCCccccc-CCHHHHHHHHHHHHcCC
Confidence 8 45554443 3578988664 366778875 67899999999988764
No 272
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.58 E-value=94 Score=32.25 Aligned_cols=55 Identities=18% Similarity=0.279 Sum_probs=36.8
Q ss_pred HHHHHHhccCCCcEEEEe-----cCCChHHHHHHHhcCCceEEeC--CCC-HHHHHHHHHHHH
Q 006057 77 KLLELVGLEMDLPVIMLS-----GNGDPKLVMKGITHGACDYLLK--PVR-IEELKNIWQHVV 131 (663)
Q Consensus 77 eLLe~Ir~~~dIPVIILS-----A~~d~e~v~kAl~aGA~DYLlK--Pvs-~eeL~~~~q~Vl 131 (663)
++++.++...++|+++|+ ...-...+.++.++|++.++.- |+. .+++...++.+.
T Consensus 64 ~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~ 126 (244)
T PRK13125 64 PLLEEVRKDVSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIK 126 (244)
T ss_pred HHHHHHhccCCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHH
Confidence 466677766788987664 2344456888999999999986 343 456555554443
No 273
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=41.19 E-value=1.5e+02 Score=32.38 Aligned_cols=91 Identities=11% Similarity=-0.015 Sum_probs=57.6
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 17 VLAVDDDPTCLLLLETLLR----RCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~----~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
|||=|.+-...-.+...++ ... ...+.+.+.++|.+.+.. .+|+|++|-.-| -++-+.++....-.+
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~~---gaDiI~LDn~s~----e~~~~av~~~~~~~~ 254 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALKA---GADIIMLDNFTT----EQMREAVKRTNGRAL 254 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEeCCCCh----HHHHHHHHhhcCCeE
Confidence 6666665444333444443 222 245578899999999874 589999996544 233333332222235
Q ss_pred EEEecCCChHHHHHHHhcCCceEE
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYL 114 (663)
|..|+.-..+.+.+..+.|++.+-
T Consensus 255 ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 255 LEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEE
Confidence 667778888889888899987653
No 274
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=41.15 E-value=2.9e+02 Score=28.36 Aligned_cols=76 Identities=22% Similarity=0.248 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHH
Q 006057 48 ITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE 122 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~ee 122 (663)
++...++.. .|++|+-..-+ +.-|..+++.+. ..+|||.. ... ...+.+..+..+++.+|-+.++
T Consensus 247 ~~l~~~~~~----adi~l~~s~~~~~~~~e~~~~~~~Ea~a--~G~Pvi~~-~~~---~~~~~i~~~~~g~~~~~~~~~~ 316 (355)
T cd03799 247 EEVRELLRA----ADLFVLPSVTAADGDREGLPVVLMEAMA--MGLPVIST-DVS---GIPELVEDGETGLLVPPGDPEA 316 (355)
T ss_pred HHHHHHHHh----CCEEEecceecCCCCccCccHHHHHHHH--cCCCEEec-CCC---CcchhhhCCCceEEeCCCCHHH
Confidence 455555542 46766633221 233556666543 56888753 222 2344566788899999999999
Q ss_pred HHHHHHHHHHh
Q 006057 123 LKNIWQHVVRR 133 (663)
Q Consensus 123 L~~~~q~Vlrr 133 (663)
+.+.+..++..
T Consensus 317 l~~~i~~~~~~ 327 (355)
T cd03799 317 LADAIERLLDD 327 (355)
T ss_pred HHHHHHHHHhC
Confidence 99999888753
No 275
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=41.13 E-value=3.5e+02 Score=29.11 Aligned_cols=104 Identities=20% Similarity=0.188 Sum_probs=49.1
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 15 LRVLAV-DDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 15 lRVLIV-DDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
+++++| .++...++.+++..+..+-.|....-..+..+++. ..|+++++ + -|..+++.+. ..+|||+.
T Consensus 231 ~~~viv~G~~~~~~~~l~~~~~~~~~~v~~~g~~~~~~~l~~----~aD~~v~~---~--gg~t~~EA~a--~g~PvI~~ 299 (380)
T PRK13609 231 LQVVVVCGKNEALKQSLEDLQETNPDALKVFGYVENIDELFR----VTSCMITK---P--GGITLSEAAA--LGVPVILY 299 (380)
T ss_pred cEEEEEeCCCHHHHHHHHHHHhcCCCcEEEEechhhHHHHHH----hccEEEeC---C--CchHHHHHHH--hCCCEEEC
Confidence 444443 33444444555544433322333332222223332 24666642 2 2555555442 46788764
Q ss_pred ecCC--ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 94 SGNG--DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 94 SA~~--d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.... +.+.+......|+ ...+.+.++|...+..++.
T Consensus 300 ~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll~ 337 (380)
T PRK13609 300 KPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALLQ 337 (380)
T ss_pred CCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHHC
Confidence 3222 1122222234454 3345678999988888774
No 276
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=40.78 E-value=3e+02 Score=30.61 Aligned_cols=108 Identities=12% Similarity=0.155 Sum_probs=66.0
Q ss_pred CcEEEEEeCC-----HHHHHHHHHHHHhCCC--EEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006057 14 GLRVLAVDDD-----PTCLLLLETLLRRCQY--HVTTTSQ--AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (663)
Q Consensus 14 glRVLIVDDD-----~~~r~iL~~lL~~~gy--~V~tasd--g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~ 84 (663)
.++++||.+. ....+.|+++.+..+. .|..... -++...+++. .|++|.=. ..+.=|+.+++.+.
T Consensus 273 ~~~lvivG~~~~~~~~~~~~~L~~~~~~l~l~~~V~f~g~v~~~~l~~~l~~----adv~v~~s-~~E~Fgi~~lEAMa- 346 (419)
T cd03806 273 KIKLVLIGSCRNEDDEKRVEDLKLLAKELGLEDKVEFVVNAPFEELLEELST----ASIGLHTM-WNEHFGIGVVEYMA- 346 (419)
T ss_pred ceEEEEEcCCCCcccHHHHHHHHHHHHHhCCCCeEEEecCCCHHHHHHHHHh----CeEEEECC-ccCCcccHHHHHHH-
Confidence 5788888764 2356667777766554 4555443 4555566653 57776532 22333677777653
Q ss_pred cCCCcEEEEecCCChHHHHHHHh---cCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGIT---HGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~---aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
..+|||+....... ...+. .|.++|+.. +++++..++..++..
T Consensus 347 -~G~pvIa~~~ggp~---~~iv~~~~~g~~G~l~~--d~~~la~ai~~ll~~ 392 (419)
T cd03806 347 -AGLIPLAHASGGPL---LDIVVPWDGGPTGFLAS--TAEEYAEAIEKILSL 392 (419)
T ss_pred -cCCcEEEEcCCCCc---hheeeccCCCCceEEeC--CHHHHHHHHHHHHhC
Confidence 45677754322222 22333 688899964 899999999988863
No 277
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=40.69 E-value=3.4e+02 Score=28.69 Aligned_cols=107 Identities=15% Similarity=0.185 Sum_probs=61.0
Q ss_pred cEEEEEe---CCHHHHHHHHHHHHhCCC---EEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc
Q 006057 15 LRVLAVD---DDPTCLLLLETLLRRCQY---HVTTT---SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE 85 (663)
Q Consensus 15 lRVLIVD---DD~~~r~iL~~lL~~~gy---~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~ 85 (663)
.+++++- +.+...+.+++.+...+. .|... -+.++...++. ..|++++=.. .+.-|+.+++.+ .
T Consensus 230 ~~l~i~g~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~----~aDv~v~ps~-~e~~g~~~lEA~--a 302 (388)
T TIGR02149 230 VQVVLCAGAPDTPEVAEEVRQAVALLDRNRTGIIWINKMLPKEELVELLS----NAEVFVCPSI-YEPLGIVNLEAM--A 302 (388)
T ss_pred CcEEEEeCCCCcHHHHHHHHHHHHHhccccCceEEecCCCCHHHHHHHHH----hCCEEEeCCc-cCCCChHHHHHH--H
Confidence 4455542 233344555555554432 13332 23445555554 3577776322 234456666554 3
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCH------HHHHHHHHHHHH
Q 006057 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRI------EELKNIWQHVVR 132 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~------eeL~~~~q~Vlr 132 (663)
..+|||+. ... ...+.+..|..+++.+|-+. ++|...+..++.
T Consensus 303 ~G~PvI~s-~~~---~~~e~i~~~~~G~~~~~~~~~~~~~~~~l~~~i~~l~~ 351 (388)
T TIGR02149 303 CGTPVVAS-ATG---GIPEVVVDGETGFLVPPDNSDADGFQAELAKAINILLA 351 (388)
T ss_pred cCCCEEEe-CCC---CHHHHhhCCCceEEcCCCCCcccchHHHHHHHHHHHHh
Confidence 56898753 322 24456677889999999888 888888887764
No 278
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=40.68 E-value=3.4e+02 Score=31.06 Aligned_cols=54 Identities=15% Similarity=0.232 Sum_probs=30.4
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEeCC
Q 006057 14 GLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTS---QA----ITALKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 14 glRVLIVDDD~~~---r~iL~~lL~~~gy~V~tas---dg----~EALelLre~k~~pDLVIlDv~ 69 (663)
|.+|+||+.|+.- .+.|+.+-+..+..+.... ++ .++++.++. ..+|+||+|.-
T Consensus 128 G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~~~--~~~DvViIDTa 191 (429)
T TIGR01425 128 GFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKFKK--ENFDIIIVDTS 191 (429)
T ss_pred CCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHHHh--CCCCEEEEECC
Confidence 5689999888633 2333333344454444322 32 235555543 36899999984
No 279
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=40.67 E-value=1.5e+02 Score=29.15 Aligned_cols=76 Identities=16% Similarity=0.223 Sum_probs=49.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC--CCEEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC--QYHVTTTS-------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~--gy~V~tas-------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~ 84 (663)
+.||.++-..+...+.+.+.|++. +..+.-+. +..+.++.+.+. .||+|++-+-+|...- ++...+.
T Consensus 46 ~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I~~~--~pdiv~vglG~PkQE~--~~~~~~~ 121 (171)
T cd06533 46 GLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERINAS--GADILFVGLGAPKQEL--WIARHKD 121 (171)
T ss_pred CCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHHHHc--CCCEEEEECCCCHHHH--HHHHHHH
Confidence 689999999998888888888775 34444321 122235566543 7999999999987664 3344444
Q ss_pred cCCCcEEEE
Q 006057 85 EMDLPVIML 93 (663)
Q Consensus 85 ~~dIPVIIL 93 (663)
....+|++-
T Consensus 122 ~l~~~v~~~ 130 (171)
T cd06533 122 RLPVPVAIG 130 (171)
T ss_pred HCCCCEEEE
Confidence 445566554
No 280
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=40.48 E-value=2.6e+02 Score=35.60 Aligned_cols=112 Identities=19% Similarity=0.114 Sum_probs=68.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-------------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-------------VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~-------------V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe 80 (663)
..||+||.-=...+..++.+.+..+++ |+.+....+..+.+.+.......|-+|+. |--++.+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~----D~e~L~~ 644 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVS----DSESLLK 644 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecC----CHHHHHH
Confidence 458999998887776666665544444 66665333333333332113456777762 3334555
Q ss_pred HHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 81 LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 81 ~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
.+.. .++-|+.+-..-....+..|+++|..-+..| ...++.....+.+.
T Consensus 645 ~v~~-~DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~Ak 693 (1042)
T PLN02819 645 YVSQ-VDVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSKAK 693 (1042)
T ss_pred hhcC-CCEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHHHH
Confidence 5543 5555555555566778999999999888888 66677666555443
No 281
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=40.42 E-value=69 Score=33.60 Aligned_cols=95 Identities=21% Similarity=0.263 Sum_probs=68.4
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 15 LRVLAVDDD-PTCLLLLETLLRRCQYHVT---TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 15 lRVLIVDDD-~~~r~iL~~lL~~~gy~V~---tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
.+|=-|-.. ...+..|.+.|.++||.|. +++....|..++++++-+|-+++-|=.|++.+|++. ..+++-|
T Consensus 40 ~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~lrP~l~v~d~a~~dF~gidT-----s~pn~VV 114 (262)
T KOG3040|consen 40 VKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQLRPYLIVDDDALEDFDGIDT-----SDPNCVV 114 (262)
T ss_pred ceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCCCceEEEcccchhhCCCccC-----CCCCeEE
Confidence 344444433 4456678888999999875 567888889999998889999999999999998532 3455555
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|-+. .+-|+.+.|-++.+-++..+
T Consensus 115 igla--------------------pe~F~y~~ln~AFrvL~e~~ 138 (262)
T KOG3040|consen 115 IGLA--------------------PEGFSYQRLNRAFRVLLEMK 138 (262)
T ss_pred EecC--------------------cccccHHHHHHHHHHHHcCC
Confidence 5433 24577788888887777654
No 282
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=40.33 E-value=75 Score=34.55 Aligned_cols=61 Identities=18% Similarity=0.138 Sum_probs=46.6
Q ss_pred CHHHHHHHHhccCCCcEE--EEecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHhh
Q 006057 74 DGFKLLELVGLEMDLPVI--MLSGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 74 DG~eLLe~Ir~~~dIPVI--ILSA~~d~e~v~kAl~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr~ 134 (663)
-++++++.+.+...+||| ....-..++.+..++++||+.+++ |.-++.+....+...+...
T Consensus 190 ~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~~akafv~ai~~~ 257 (293)
T PRK04180 190 APYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEKRARAIVEATTHY 257 (293)
T ss_pred CCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHHHHHHHHHHHHHc
Confidence 478888888776789998 666666889999999999999754 4457777777776666543
No 283
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=40.33 E-value=2.5e+02 Score=29.07 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=55.4
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCC-CC-C-CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC--CCC
Q 006057 45 SQAITALKLLRENKNKFDLVISDVH-MP-D-MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK--PVR 119 (663)
Q Consensus 45 sdg~EALelLre~k~~pDLVIlDv~-MP-d-mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK--Pvs 119 (663)
.++.+..+.+.+. --.++++|+. +- + ..-+++++.+.....+||++=-+-...+.+.+++..|++..++- -++
T Consensus 30 ~dp~~~a~~~~~~--~~~l~ivDldga~~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~ 107 (228)
T PRK04128 30 GDPVEIALRFSEY--VDKIHVVDLDGAFEGKPKNLDVVKNIIRETGLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFD 107 (228)
T ss_pred CCHHHHHHHHHHh--CCEEEEEECcchhcCCcchHHHHHHHHhhCCCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcC
Confidence 4777777766652 2237778886 32 2 24578888887778899998777888899999999999987763 244
Q ss_pred HHHHHHH
Q 006057 120 IEELKNI 126 (663)
Q Consensus 120 ~eeL~~~ 126 (663)
++.+..+
T Consensus 108 ~~~l~~~ 114 (228)
T PRK04128 108 LEFLEKV 114 (228)
T ss_pred HHHHHHH
Confidence 4433333
No 284
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=40.12 E-value=1.9e+02 Score=28.62 Aligned_cols=70 Identities=9% Similarity=-0.019 Sum_probs=51.2
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 42 TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 42 ~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
.-+.+.+|+.+.++. .+|+|-++- .+.. |.++++.++.. +.+|++.+.+- ..+.+.+.++.|++....--
T Consensus 102 ~gv~t~~e~~~A~~~---Gad~i~~~p-~~~~-g~~~~~~l~~~~~~~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s 172 (190)
T cd00452 102 PGVATPTEIMQALEL---GADIVKLFP-AEAV-GPAYIKALKGPFPQVRFMPTGGV-SLDNAAEWLAAGVVAVGGGS 172 (190)
T ss_pred CCcCCHHHHHHHHHC---CCCEEEEcC-Cccc-CHHHHHHHHhhCCCCeEEEeCCC-CHHHHHHHHHCCCEEEEEch
Confidence 356688888888754 589998853 3333 89999888654 46898877665 77889999999988765443
No 285
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=39.92 E-value=3.2e+02 Score=28.81 Aligned_cols=108 Identities=15% Similarity=0.100 Sum_probs=63.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQ--YHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDL 88 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~g--y~V~ta--sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dI 88 (663)
.+||.||----.........+...+ ..++.+ .+.+.|.+...+. .+.-+..|+ - +.+... .++
T Consensus 3 ~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~--~~~~~~~~~-------~---~ll~~~~iD~ 70 (342)
T COG0673 3 MIRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEF--GIAKAYTDL-------E---ELLADPDIDA 70 (342)
T ss_pred eeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHc--CCCcccCCH-------H---HHhcCCCCCE
Confidence 4788888876555554555555544 354433 3444455444432 222122111 1 122221 344
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
-+|........+.+.+|+++|..=|+-||+ +.+|...+++.+-+.
T Consensus 71 V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 71 VYIATPNALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred EEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 455455566788899999999999999994 578888766655443
No 286
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=39.82 E-value=2.2e+02 Score=29.32 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=43.7
Q ss_pred EEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEeCCC
Q 006057 41 VTTTSQAITALKLLRE-NKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118 (663)
Q Consensus 41 V~tasdg~EALelLre-~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPv 118 (663)
|....+.+++++..+. ....+.+|=+.+ -.-+.++.++.+++. +++.| -.-.--+.+.+++++++||...+..-+
T Consensus 13 Vlr~~~~e~a~~~~~al~~~Gi~~iEit~--~t~~a~~~i~~l~~~~~~~~v-GAGTVl~~~~a~~a~~aGA~FivsP~~ 89 (204)
T TIGR01182 13 VIRIDDVDDALPLAKALIEGGLRVLEVTL--RTPVALDAIRLLRKEVPDALI-GAGTVLNPEQLRQAVDAGAQFIVSPGL 89 (204)
T ss_pred EEecCCHHHHHHHHHHHHHcCCCEEEEeC--CCccHHHHHHHHHHHCCCCEE-EEEeCCCHHHHHHHHHcCCCEEECCCC
Confidence 3444556665544432 112355443333 345577777777644 33322 233345677899999999876555445
Q ss_pred CHHHH
Q 006057 119 RIEEL 123 (663)
Q Consensus 119 s~eeL 123 (663)
+++-+
T Consensus 90 ~~~v~ 94 (204)
T TIGR01182 90 TPELA 94 (204)
T ss_pred CHHHH
Confidence 54433
No 287
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=39.75 E-value=2.6e+02 Score=29.53 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=38.6
Q ss_pred CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 73 MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 73 mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.-|+.+++.+ ...+|||....... ....+..|..+|+..|-+.++|..++..++..
T Consensus 290 g~~~~~lEAm--a~G~PvI~~~~~~g---~~~~v~~~~~G~lv~~~d~~~la~~i~~ll~~ 345 (372)
T cd04949 290 GFGLSLMEAL--SHGLPVISYDVNYG---PSEIIEDGENGYLVPKGDIEALAEAIIELLND 345 (372)
T ss_pred ccChHHHHHH--hCCCCEEEecCCCC---cHHHcccCCCceEeCCCcHHHHHHHHHHHHcC
Confidence 3355555554 35689886432211 23455678899999999999999999988754
No 288
>PRK09288 purT phosphoribosylglycinamide formyltransferase 2; Validated
Probab=39.74 E-value=3.7e+02 Score=29.28 Aligned_cols=30 Identities=20% Similarity=0.168 Sum_probs=21.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVT 42 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~ 42 (663)
|..++|||+..-...+..+.. +.+.||.|.
T Consensus 10 ~~~~~ilIiG~g~~~~~~~~a-~~~~G~~v~ 39 (395)
T PRK09288 10 PSATRVMLLGSGELGKEVAIE-AQRLGVEVI 39 (395)
T ss_pred CCCCEEEEECCCHHHHHHHHH-HHHCCCEEE
Confidence 456799999988766655554 566687665
No 289
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=39.12 E-value=61 Score=34.15 Aligned_cols=80 Identities=25% Similarity=0.230 Sum_probs=48.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC-------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH----------
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTS-------QAITALKLLRENKNKFDLVISDVHMPDMDGFK---------- 77 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tas-------dg~EALelLre~k~~pDLVIlDv~MPdmDG~e---------- 77 (663)
|||||+...-.+-..|.+.|...+++|..+. +.++..+++.+. +||+||-=.-+...+..+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~~~~--~pd~Vin~aa~~~~~~ce~~p~~a~~iN 78 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLLEAF--KPDVVINCAAYTNVDACEKNPEEAYAIN 78 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHHHHH----SEEEE------HHHHHHSHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHHHHh--CCCeEeccceeecHHhhhhChhhhHHHh
Confidence 7999999998888899999998888888663 555555666654 699887544332222111
Q ss_pred -----HHHHHhccCCCcEEEEecC
Q 006057 78 -----LLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 78 -----LLe~Ir~~~dIPVIILSA~ 96 (663)
.+..+-....+++|.+|..
T Consensus 79 ~~~~~~la~~~~~~~~~li~~STd 102 (286)
T PF04321_consen 79 VDATKNLAEACKERGARLIHISTD 102 (286)
T ss_dssp THHHHHHHHHHHHCT-EEEEEEEG
T ss_pred hHHHHHHHHHHHHcCCcEEEeecc
Confidence 1111112357899999874
No 290
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.10 E-value=1.2e+02 Score=35.67 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=57.2
Q ss_pred cEEEEEe--CCHHHHH---HHHHHHHhCCCEEEEECCHHHHHHH-HH------hcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006057 15 LRVLAVD--DDPTCLL---LLETLLRRCQYHVTTTSQAITALKL-LR------ENKNKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 15 lRVLIVD--DD~~~r~---iL~~lL~~~gy~V~tasdg~EALel-Lr------e~k~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
++|+||- ..+...+ .+...|...+..|.........+.. +. .....+|+||+ -+.||- +|+..
T Consensus 291 ~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvi~----lGGDGT-~L~aa 365 (569)
T PRK14076 291 TKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNLIDDIEEISHIIS----IGGDGT-VLRAS 365 (569)
T ss_pred cEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccccccccCCCEEEE----ECCcHH-HHHHH
Confidence 4677773 2233333 3444455557766654332222210 00 00113566665 467883 44444
Q ss_pred hc--cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 83 GL--EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 83 r~--~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+. ..++||+-+- .|-.+||. .++++++...+..++++.
T Consensus 366 ~~~~~~~~PilGin-------------~G~lGFL~-~~~~~~~~~~l~~~~~g~ 405 (569)
T PRK14076 366 KLVNGEEIPIICIN-------------MGTVGFLT-EFSKEEIFKAIDSIISGE 405 (569)
T ss_pred HHhcCCCCCEEEEc-------------CCCCCcCc-ccCHHHHHHHHHHHHcCC
Confidence 32 3478887653 46678888 789999999999998764
No 291
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.02 E-value=2.9e+02 Score=29.82 Aligned_cols=100 Identities=21% Similarity=0.244 Sum_probs=59.5
Q ss_pred EEEEEe--CCHH---HHHHHHHHHHhCCCEEEEECCHHHHHH-----H--HHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 16 RVLAVD--DDPT---CLLLLETLLRRCQYHVTTTSQAITALK-----L--LRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 16 RVLIVD--DD~~---~r~iL~~lL~~~gy~V~tasdg~EALe-----l--Lre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
+|.||- +.+. ..+.+.+.|++.++++.......+.+. . .......+|+||+ -+.||. +++..+
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGt-~l~~~~ 80 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVSRKLLGEVCDLVIV----VGGDGS-LLGAAR 80 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccchhhcccCCCEEEE----EeCcHH-HHHHHH
Confidence 588873 2233 344556667777888776543222111 0 0111124788876 467883 333332
Q ss_pred --ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 84 --LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 84 --~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
...++||+-+-. |-.+|| -.++++++..+++.++++.
T Consensus 81 ~~~~~~~Pvlgin~-------------G~lGFl-~~~~~~~~~~~l~~~~~g~ 119 (295)
T PRK01231 81 ALARHNVPVLGINR-------------GRLGFL-TDIRPDELEFKLAEVLDGH 119 (295)
T ss_pred HhcCCCCCEEEEeC-------------Cccccc-ccCCHHHHHHHHHHHHcCC
Confidence 245789886653 566787 4688999999999998654
No 292
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=38.97 E-value=3.1e+02 Score=27.41 Aligned_cols=90 Identities=10% Similarity=0.099 Sum_probs=54.4
Q ss_pred CCHHHHHHHHHHHHhCCCEEEE-EC-------CHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHhccCCC
Q 006057 22 DDPTCLLLLETLLRRCQYHVTT-TS-------QAITALKLLRENKNKFDLVISDVHM-----PDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 22 DD~~~r~iL~~lL~~~gy~V~t-as-------dg~EALelLre~k~~pDLVIlDv~M-----PdmDG~eLLe~Ir~~~dI 88 (663)
+-....++++.+-+.++..|.. .. +..+.++.+.+. .+|.|.+.-.. ...-.++.++.+++..++
T Consensus 107 ~~~~~~eii~~v~~~~~~~v~vk~r~~~~~~~~~~~~~~~l~~~--Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~~i 184 (231)
T cd02801 107 DPELVAEIVRAVREAVPIPVTVKIRLGWDDEEETLELAKALEDA--GASALTVHGRTREQRYSGPADWDYIAEIKEAVSI 184 (231)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEEeeccCCchHHHHHHHHHHHh--CCCEEEECCCCHHHcCCCCCCHHHHHHHHhCCCC
Confidence 3444566666665555533321 11 223334444432 46777654321 112346777888877889
Q ss_pred cEEEEecCCChHHHHHHHhc-CCceE
Q 006057 89 PVIMLSGNGDPKLVMKGITH-GACDY 113 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~a-GA~DY 113 (663)
|||.-..-.+.+.+.+++.. ||+..
T Consensus 185 pvi~~Ggi~~~~d~~~~l~~~gad~V 210 (231)
T cd02801 185 PVIANGDIFSLEDALRCLEQTGVDGV 210 (231)
T ss_pred eEEEeCCCCCHHHHHHHHHhcCCCEE
Confidence 99988887788899999998 66654
No 293
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=38.63 E-value=2.7e+02 Score=30.36 Aligned_cols=56 Identities=20% Similarity=0.230 Sum_probs=30.9
Q ss_pred CCCcEEEEEeCCHHHH---HHHHHHHHhCCCEEEEEC---CH----HHHHHHHHhcCCCceEEEEeCC
Q 006057 12 PSGLRVLAVDDDPTCL---LLLETLLRRCQYHVTTTS---QA----ITALKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 12 P~glRVLIVDDD~~~r---~iL~~lL~~~gy~V~tas---dg----~EALelLre~k~~pDLVIlDv~ 69 (663)
+.+.+|+|++-|..-. +.+...-.+.+..+.... ++ .+++..... ..+|+||+|.-
T Consensus 140 ~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~~~--~~~D~ViIDTa 205 (318)
T PRK10416 140 AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAAKA--RGIDVLIIDTA 205 (318)
T ss_pred hcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHHHh--CCCCEEEEeCC
Confidence 3467899999886322 233444444455554332 22 233333222 36999999983
No 294
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=38.62 E-value=81 Score=28.79 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=40.6
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC--HHHHHHHHHHH
Q 006057 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR--IEELKNIWQHV 130 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs--~eeL~~~~q~V 130 (663)
....|++-- .+|......-+..+.+|||++|..... ...-++-.|+.-++.++.. .+++.......
T Consensus 16 ~ak~Ivv~T----~sG~ta~~isk~RP~~pIiavt~~~~~-~r~l~l~~GV~p~~~~~~~~~~~~~~~~a~~~ 83 (117)
T PF02887_consen 16 NAKAIVVFT----ESGRTARLISKYRPKVPIIAVTPNESV-ARQLSLYWGVYPVLIEEFDKDTEELIAEALEY 83 (117)
T ss_dssp TESEEEEE-----SSSHHHHHHHHT-TSSEEEEEESSHHH-HHHGGGSTTEEEEECSSHSHSHHHHHHHHHHH
T ss_pred CCCEEEEEC----CCchHHHHHHhhCCCCeEEEEcCcHHH-HhhhhcccceEEEEeccccccHHHHHHHHHHH
Confidence 355666533 456555554466789999999975543 2333578999998888866 55554443333
No 295
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=38.29 E-value=4.8e+02 Score=27.18 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=34.7
Q ss_pred HHHHHHHhccCCCcEEEEecC---CChHHHHHHHhcCCceEEeCCCC--HHHHHHHHHHHHHh
Q 006057 76 FKLLELVGLEMDLPVIMLSGN---GDPKLVMKGITHGACDYLLKPVR--IEELKNIWQHVVRR 133 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~---~d~e~v~kAl~aGA~DYLlKPvs--~eeL~~~~q~Vlrr 133 (663)
..+++.+ ...+|+|+.... .......+.+..+-.+++..|-+ .++|.+++..++..
T Consensus 261 ~~l~Ea~--~~g~Pvv~~~~~~~~~~~~~~~~~i~~~~~G~~~~~~~~~~~~l~~~i~~ll~~ 321 (348)
T TIGR01133 261 STVAELA--AAGVPAILIPYPYAADDQYYNAKFLEDLGAGLVIRQKELLPEKLLEALLKLLLD 321 (348)
T ss_pred hHHHHHH--HcCCCEEEeeCCCCccchhhHHHHHHHCCCEEEEecccCCHHHHHHHHHHHHcC
Confidence 3444444 246899876321 12222334456677888887754 99999999988853
No 296
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.99 E-value=2.6e+02 Score=29.88 Aligned_cols=100 Identities=18% Similarity=0.349 Sum_probs=58.0
Q ss_pred cEEEEE--eCCHHHHHHHHHHHH--hCCCEEEEECCHHHHHHHH--HhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006057 15 LRVLAV--DDDPTCLLLLETLLR--RCQYHVTTTSQAITALKLL--RENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 15 lRVLIV--DDD~~~r~iL~~lL~--~~gy~V~tasdg~EALelL--re~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI 88 (663)
|+|.|+ .+.+...+.+.++++ ..++++.......+++... ......+|+||+ -+.||- +|+..+.. ..
T Consensus 1 m~i~iv~~~~~~~~~~~~~~i~~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT-~L~a~~~~-~~ 74 (271)
T PRK01185 1 MKVAFVIRKDCKRCIKIAKSIIELLPPDWEIIYEMEAAKALGMDGLDIEEINADVIIT----IGGDGT-ILRTLQRA-KG 74 (271)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHhcCCEEEEechhhhhcCcccCcccccCCCEEEE----EcCcHH-HHHHHHHc-CC
Confidence 567777 333444444444433 3477766544333322200 001114677776 577884 55544432 35
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
||+-+- .|-.+||. .++++++...++.++++.
T Consensus 75 PilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~g~ 106 (271)
T PRK01185 75 PILGIN-------------MGGLGFLT-EIEIDEVGSAIKKLIRGE 106 (271)
T ss_pred CEEEEE-------------CCCCccCc-ccCHHHHHHHHHHHHcCC
Confidence 887653 36678998 689999999999998764
No 297
>PRK00811 spermidine synthase; Provisional
Probab=37.82 E-value=1.7e+02 Score=31.06 Aligned_cols=57 Identities=23% Similarity=0.274 Sum_probs=39.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC------CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQ------YHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~g------y~V~-tasdg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
..-+|.+||=|+.+.+..++.+.... -+|. ...++.+.+ ......+|+||+|..-|.
T Consensus 99 ~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l---~~~~~~yDvIi~D~~dp~ 162 (283)
T PRK00811 99 SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFV---AETENSFDVIIVDSTDPV 162 (283)
T ss_pred CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHH---hhCCCcccEEEECCCCCC
Confidence 34589999999999999998886421 2333 455665544 333457999999986664
No 298
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=37.73 E-value=3.1e+02 Score=27.42 Aligned_cols=53 Identities=23% Similarity=0.353 Sum_probs=35.9
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|..+++.+. ..+|||+ +.... ..+.+..|..+++..+-+++++...+..++..
T Consensus 277 ~~~~~Ea~~--~G~Pvi~-s~~~~---~~~~i~~~~~g~~~~~~~~~~~~~~i~~l~~~ 329 (359)
T cd03808 277 PRVLLEAMA--MGRPVIA-TDVPG---CREAVIDGVNGFLVPPGDAEALADAIERLIED 329 (359)
T ss_pred chHHHHHHH--cCCCEEE-ecCCC---chhhhhcCcceEEECCCCHHHHHHHHHHHHhC
Confidence 455555442 4578876 33222 23445567889999999999999999887643
No 299
>PF13941 MutL: MutL protein
Probab=37.57 E-value=5.5e+02 Score=29.74 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=72.7
Q ss_pred CCcEEEEEeCCHH-HHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH---HHHHh-c
Q 006057 13 SGLRVLAVDDDPT-CLLLLETLLRRCQYHVT---TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKL---LELVG-L 84 (663)
Q Consensus 13 ~glRVLIVDDD~~-~r~iL~~lL~~~gy~V~---tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eL---Le~Ir-~ 84 (663)
.|+|+.++-=-+. ..+.-++.-...|-.|. ...-.++-++.+++. +||+||+-=-..+.+.--+ .+.|. .
T Consensus 75 GGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i~~~--~PDiILLaGGtDgG~~~~il~nA~~La~~ 152 (457)
T PF13941_consen 75 GGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEIREI--RPDIILLAGGTDGGNKEVILHNAEMLAEA 152 (457)
T ss_pred CcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHHhcc--CCCEEEEeCCccCCchHHHHHHHHHHHhC
Confidence 4788888864432 34444444445566554 334445566777754 7999999444444443333 34553 3
Q ss_pred cCCCcEEEEecCCChHHHHHHHh-cCCceEEeCC-------CCHHHHHHHHHHHHHhh
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGIT-HGACDYLLKP-------VRIEELKNIWQHVVRRK 134 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~-aGA~DYLlKP-------vs~eeL~~~~q~Vlrr~ 134 (663)
...+|||+-....-.+.+.+.+. .|..-|++.- ++++-.+.+|+.+..++
T Consensus 153 ~~~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~ 210 (457)
T PF13941_consen 153 NLRIPVIYAGNKAAQDEVEEILEKAGKEVVITENVMPKIDVLNVEPAREAIREVFLRH 210 (457)
T ss_pred CCCCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHH
Confidence 45788887666666677888888 6667676653 35666677777665443
No 300
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=37.54 E-value=1.2e+02 Score=31.67 Aligned_cols=58 Identities=21% Similarity=0.262 Sum_probs=41.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEEC--CHHHHHHHHHhcCCCceEEEEeCCCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYH--VTTTS--QAITALKLLRENKNKFDLVISDVHMP 71 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~--V~tas--dg~EALelLre~k~~pDLVIlDv~MP 71 (663)
|..-+|.-||-++...+.-++.+++.|+. |.... ++.+.+... ....||+|++|..=+
T Consensus 82 ~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~--~~~~fDliFIDadK~ 143 (219)
T COG4122 82 PDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL--LDGSFDLVFIDADKA 143 (219)
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc--cCCCccEEEEeCChh
Confidence 43348999999999999999999998763 44333 444444431 234799999998543
No 301
>PHA02518 ParA-like protein; Provisional
Probab=37.34 E-value=74 Score=31.02 Aligned_cols=93 Identities=15% Similarity=-0.006 Sum_probs=0.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
|.+|||||-|+..-..--.-....+. .+..........+.+......+|+||+|+ |...+.-+...+.....+-|++
T Consensus 29 g~~vlliD~D~q~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~d~viiD~--p~~~~~~~~~~l~~aD~viip~ 106 (211)
T PHA02518 29 GHKVLLVDLDPQGSSTDWAEAREEGEPLIPVVRMGKSIRADLPKVASGYDYVVVDG--APQDSELARAALRIADMVLIPV 106 (211)
T ss_pred CCeEEEEeCCCCCChHHHHHhcccCCCCCchhhccHHHHHHHHHHhccCCEEEEeC--CCCccHHHHHHHHHCCEEEEEe
Q ss_pred EecCCChHHHHHHHhc
Q 006057 93 LSGNGDPKLVMKGITH 108 (663)
Q Consensus 93 LSA~~d~e~v~kAl~a 108 (663)
-....+...+.+.++.
T Consensus 107 ~ps~~~~~~~~~~~~~ 122 (211)
T PHA02518 107 QPSPFDIWAAPDLVEL 122 (211)
T ss_pred CCChhhHHHHHHHHHH
No 302
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=36.88 E-value=2.2e+02 Score=27.92 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=49.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC--CCEEEEECC-------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC--QYHVTTTSQ-------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~--gy~V~tasd-------g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~ 84 (663)
+.+|.++-..+...+.+.+.|++. +..++-+.+ .++.++.+.. ..||+|++-+-+|...- ++...+.
T Consensus 48 ~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~--~~pdiv~vglG~PkQE~--~~~~~~~ 123 (172)
T PF03808_consen 48 GKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINA--SGPDIVFVGLGAPKQER--WIARHRQ 123 (172)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHH--cCCCEEEEECCCCHHHH--HHHHHHH
Confidence 579999999998888888888775 445543332 3334455554 37999999998887553 4445554
Q ss_pred cCCCcEEEE
Q 006057 85 EMDLPVIML 93 (663)
Q Consensus 85 ~~dIPVIIL 93 (663)
....+|++-
T Consensus 124 ~l~~~v~i~ 132 (172)
T PF03808_consen 124 RLPAGVIIG 132 (172)
T ss_pred HCCCCEEEE
Confidence 455554443
No 303
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=36.58 E-value=50 Score=33.67 Aligned_cols=79 Identities=16% Similarity=0.188 Sum_probs=44.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe-C-CCCCCCHHH--HHHHHhccCCCcE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISD-V-HMPDMDGFK--LLELVGLEMDLPV 90 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlD-v-~MPdmDG~e--LLe~Ir~~~dIPV 90 (663)
|||||+|........+...|++.|+.+..+......+....+....+|.||+- = ..|..++.+ +++.+ ...++||
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~-~~~~~Pi 79 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRAC-AAAGTPL 79 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHH-HhCCCCE
Confidence 68999999887777888899988988765543221111111111247877662 1 123323332 33322 2346898
Q ss_pred EEEe
Q 006057 91 IMLS 94 (663)
Q Consensus 91 IILS 94 (663)
+-+.
T Consensus 80 LGIC 83 (214)
T PRK07765 80 LGVC 83 (214)
T ss_pred EEEc
Confidence 7765
No 304
>PLN02823 spermine synthase
Probab=36.50 E-value=78 Score=34.81 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=37.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-----CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC-----QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP 71 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~-----gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MP 71 (663)
..+|.+||=|+.+.+..++.+... +-+|. ...|+.+.+ +.....+|+||+|+--|
T Consensus 127 ~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L---~~~~~~yDvIi~D~~dp 187 (336)
T PLN02823 127 VEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAEL---EKRDEKFDVIIGDLADP 187 (336)
T ss_pred CCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHH---hhCCCCccEEEecCCCc
Confidence 458999999999999998888532 12233 345555544 44445799999997544
No 305
>PRK04148 hypothetical protein; Provisional
Probab=36.39 E-value=1.2e+02 Score=29.18 Aligned_cols=59 Identities=8% Similarity=0.235 Sum_probs=44.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF 76 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~ 76 (663)
+.+||.|.-= .-..+...|.+.|++|+.+.--.+|++.+++. ..+++..|+.-|++.-+
T Consensus 17 ~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~--~~~~v~dDlf~p~~~~y 75 (134)
T PRK04148 17 NKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAKKL--GLNAFVDDLFNPNLEIY 75 (134)
T ss_pred CCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHh--CCeEEECcCCCCCHHHH
Confidence 4688888765 22335667778899999888778888877764 57999999988886643
No 306
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=36.07 E-value=1.8e+02 Score=32.07 Aligned_cols=63 Identities=17% Similarity=0.245 Sum_probs=40.9
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCEEEEE---------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 006057 15 LRVLAVDDDPT-----CLLLLETLLRRCQYHVTTT---------SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (663)
Q Consensus 15 lRVLIVDDD~~-----~r~iL~~lL~~~gy~V~ta---------sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe 80 (663)
-|||||-|... ..+.+...|+..+.++..+ .+..++.+.+++. ++|+||- +.+..-+++.+
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~Iia---vGGGS~iD~aK 100 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREE--GCDFVVG---LGGGSSMDTAK 100 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHHH
Confidence 58999887644 3356777787777665543 2345666777754 6898884 45666666666
Q ss_pred HH
Q 006057 81 LV 82 (663)
Q Consensus 81 ~I 82 (663)
.+
T Consensus 101 ~i 102 (380)
T cd08185 101 AI 102 (380)
T ss_pred HH
Confidence 44
No 307
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=36.00 E-value=84 Score=30.31 Aligned_cols=52 Identities=25% Similarity=0.182 Sum_probs=34.4
Q ss_pred CCCcEEEEEeCCHHH---------HHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 006057 12 PSGLRVLAVDDDPTC---------LLLLETLLRRC-QYHVTTTSQAITALKLLRENKNKFDLVIS 66 (663)
Q Consensus 12 P~glRVLIVDDD~~~---------r~iL~~lL~~~-gy~V~tasdg~EALelLre~k~~pDLVIl 66 (663)
+..++|.|||.|... -+.+.+.|... .+.+.. .+.++|.+.++.+ +++.+|+
T Consensus 41 ~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l~~g--~~~~~iv 102 (164)
T TIGR03061 41 LDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGLADG--KYYMVIT 102 (164)
T ss_pred cCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHhHcC--cEEEEEE
Confidence 457899999988653 34445555543 344443 4889999999875 5776654
No 308
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=35.93 E-value=2.3e+02 Score=29.09 Aligned_cols=59 Identities=10% Similarity=0.068 Sum_probs=32.1
Q ss_pred eCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHH
Q 006057 67 DVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125 (663)
Q Consensus 67 Dv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~ 125 (663)
++.|-.-+.++.++.+++...--+|=.-.--+.+.+++++++||...+..-++++-+..
T Consensus 34 Eit~~tp~a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivSP~~~~~vi~~ 92 (201)
T PRK06015 34 EITLRTPAALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVSPGTTQELLAA 92 (201)
T ss_pred EEeCCCccHHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEECCCCCHHHHHH
Confidence 33344445666666554332211222233456778899999998755554455554443
No 309
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=35.88 E-value=86 Score=31.41 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=35.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIl 66 (663)
|+|+|||-.--....+.+.|++.|+++....+..+ + ..+|.||+
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~~~----~----~~~d~iii 44 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDPEE----I----LDADGIVL 44 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCHHH----H----ccCCEEEE
Confidence 68999999888889999999999999888765322 2 15888887
No 310
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=35.75 E-value=43 Score=33.28 Aligned_cols=89 Identities=13% Similarity=0.097 Sum_probs=51.9
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHH--HHHHHHhccCCCcEEE
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH--MPDMDGF--KLLELVGLEMDLPVIM 92 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~--MPdmDG~--eLLe~Ir~~~dIPVII 92 (663)
|||||....+-..|..+|++.|+++..+...+..++.+.. ..||.||+-=- -|..++. ++++.+ ...+||+-
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~~~--~~~d~iils~GPg~p~~~~~~~~~~~~~--~~~~PiLG 77 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADIDA--LKPQKIVISPGPCTPDEAGISLDVIRHY--AGRLPILG 77 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHHHh--cCCCEEEEcCCCCChHHCCccHHHHHHh--cCCCCEEE
Confidence 8999999888888999999989888766553322333332 25787776221 1222232 233322 34689876
Q ss_pred EecCCChHHHHHHHhcCCceE
Q 006057 93 LSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DY 113 (663)
+.- ....-|...|+.=+
T Consensus 78 ICl----G~Q~la~a~Gg~v~ 94 (187)
T PRK08007 78 VCL----GHQAMAQAFGGKVV 94 (187)
T ss_pred ECH----HHHHHHHHcCCEEE
Confidence 652 33333445565443
No 311
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=35.71 E-value=3e+02 Score=32.58 Aligned_cols=98 Identities=15% Similarity=0.147 Sum_probs=66.9
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHH---hccCCCcEEEEecCCC
Q 006057 29 LLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELV---GLEMDLPVIMLSGNGD 98 (663)
Q Consensus 29 iL~~lL~~~gy~V~t--asdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~I---r~~~dIPVIILSA~~d 98 (663)
..-..|+..|+.+.. +..+...+..+..- .||.|-+|-.+- +.....+++.+ ....++.|| ..+-.+
T Consensus 682 ~~l~~l~~~G~~i~ld~fg~~~~~~~~l~~l--~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~vi-a~gVe~ 758 (799)
T PRK11359 682 KRIQILRDMGVGLSVDDFGTGFSGLSRLVSL--PVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLTVV-AEGVET 758 (799)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHHhhC--CCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCeEE-EEcCCC
Confidence 344467778998865 46777777777754 699999987542 12233445533 234556655 456677
Q ss_pred hHHHHHHHhcCCc----eEEeCCCCHHHHHHHHHH
Q 006057 99 PKLVMKGITHGAC----DYLLKPVRIEELKNIWQH 129 (663)
Q Consensus 99 ~e~v~kAl~aGA~----DYLlKPvs~eeL~~~~q~ 129 (663)
.+....+.+.|++ .|+.||...++|...++.
T Consensus 759 ~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~~ 793 (799)
T PRK11359 759 KEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMSS 793 (799)
T ss_pred HHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHHh
Confidence 7788888899987 478899999999885543
No 312
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=35.61 E-value=4.1e+02 Score=27.75 Aligned_cols=103 Identities=17% Similarity=0.207 Sum_probs=67.6
Q ss_pred HHHHHHHHhCCCEEEEECC---HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH-------HHhccCCCcEEEEecCC
Q 006057 28 LLLETLLRRCQYHVTTTSQ---AITALKLLRENKNKFDLVISDVHMPDMDGFKLLE-------LVGLEMDLPVIMLSGNG 97 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~tasd---g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe-------~Ir~~~dIPVIILSA~~ 97 (663)
..+.+.+++.|..+..+-. ..+.+..+. ...|+||+=..-|+.-|-.+.+ ++|....-..|=+-+--
T Consensus 102 ~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~---~~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp~l~ievDGGv 178 (224)
T KOG3111|consen 102 AELVEKIREKGMKVGLALKPGTPVEDLEPLA---EHVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYPNLDIEVDGGV 178 (224)
T ss_pred HHHHHHHHHcCCeeeEEeCCCCcHHHHHHhh---ccccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCCCceEEecCCc
Confidence 4556667777877765533 333343333 3579988877779988877653 44544444556566666
Q ss_pred ChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 006057 98 DPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 98 d~e~v~kAl~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr 133 (663)
..+.+.++.++||+..+. +.-++.+....++...+.
T Consensus 179 ~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~ 219 (224)
T KOG3111|consen 179 GPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEK 219 (224)
T ss_pred CcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhh
Confidence 778899999999987643 445677777777665543
No 313
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=35.35 E-value=3.8e+02 Score=26.59 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=34.4
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|..+++.+ ...+|||. +... ...+.+..|..+|+.++-+.+++...++.+..
T Consensus 277 ~~~~~Ea~--~~G~PvI~-~~~~---~~~e~i~~~~~g~~~~~~~~~~~~~~~~~i~~ 328 (353)
T cd03811 277 PNVLLEAM--ALGTPVVA-TDCP---GPREILEDGENGLLVPVGDEAALAAAALALLD 328 (353)
T ss_pred CcHHHHHH--HhCCCEEE-cCCC---ChHHHhcCCCceEEECCCCHHHHHHHHHHHHh
Confidence 44455544 24678875 3222 34566778899999999999999766665543
No 314
>PLN02476 O-methyltransferase
Probab=35.33 E-value=1.6e+02 Score=31.72 Aligned_cols=58 Identities=19% Similarity=0.277 Sum_probs=43.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhc--CCCceEEEEeCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLREN--KNKFDLVISDVH 69 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~--V~-tasdg~EALelLre~--k~~pDLVIlDv~ 69 (663)
|.+-+|.-+|-++...+..++.+++.|+. |. ...++.+.|..+... ...||+|++|..
T Consensus 141 ~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD~VFIDa~ 203 (278)
T PLN02476 141 PESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYDFAFVDAD 203 (278)
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCCEEEECCC
Confidence 33457999999999999999999998874 43 457777777655321 247999999985
No 315
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=35.32 E-value=3.2e+02 Score=31.05 Aligned_cols=98 Identities=16% Similarity=0.176 Sum_probs=60.7
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCCC-CCCCHHH--HHHHHhccCC
Q 006057 14 GLRVLAVDD-DPTCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVHM-PDMDGFK--LLELVGLEMD 87 (663)
Q Consensus 14 glRVLIVDD-D~~~r~iL~~lL~~~gy~V~tas--dg~EALelLre~k~~pDLVIlDv~M-PdmDG~e--LLe~Ir~~~d 87 (663)
|=+||+.+| ---++..+..+|.+.|.+|..+. +..+.++.+.. ...++|+++.-- |-+.-.+ .+.++.+...
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g 179 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPDIPAIARLAKAYG 179 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCcccccccHHHHHHHHHhcC
Confidence 567888887 35578889999999999998765 44455555543 258999997621 3332222 2223333333
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.++++-..-......+.+++|||-.+
T Consensus 180 -~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 180 -ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred -CEEEEECCcccccccChhhcCCCEEE
Confidence 45555444445567778888876543
No 316
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=35.31 E-value=98 Score=32.31 Aligned_cols=60 Identities=22% Similarity=0.398 Sum_probs=40.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-------CCEEEEECCHHHHHHHHHhcCC-CceEEEEeCCCCCCCH
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRC-------QYHVTTTSQAITALKLLRENKN-KFDLVISDVHMPDMDG 75 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~-------gy~V~tasdg~EALelLre~k~-~pDLVIlDv~MPdmDG 75 (663)
|...+|-+||=|+.+.+..++++... ..++ ...|+.. .+++... .+|+||+|+.-|...+
T Consensus 98 ~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~---~l~~~~~~~yDvIi~D~~dp~~~~ 165 (246)
T PF01564_consen 98 PPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRK---FLKETQEEKYDVIIVDLTDPDGPA 165 (246)
T ss_dssp TT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHH---HHHTSSST-EEEEEEESSSTTSCG
T ss_pred CCcceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHH---HHHhccCCcccEEEEeCCCCCCCc
Confidence 44468999999999999998888642 1233 4555555 4454444 7999999998876544
No 317
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=35.28 E-value=2.3e+02 Score=29.43 Aligned_cols=72 Identities=15% Similarity=0.142 Sum_probs=53.3
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 44 TSQAITALKLLRENKNKFDLVISDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 44 asdg~EALelLre~k~~pDLVIlDv~MPd---mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
..++.+..+.+.+. ..-.|+++|+.-.+ ..-+++++.+.+...+||++-.+-...+.+.+++..||+..++-
T Consensus 29 ~~dp~~~a~~~~~~-G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivg 103 (254)
T TIGR00735 29 AGDPVELAQRYDEE-GADELVFLDITASSEGRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSIN 103 (254)
T ss_pred CCCHHHHHHHHHHc-CCCEEEEEcCCcccccChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 34777777777653 23358888987543 23356677776667899999999999999999999998887654
No 318
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=35.23 E-value=3.2e+02 Score=29.39 Aligned_cols=94 Identities=14% Similarity=0.153 Sum_probs=57.7
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEEE-E-----C---CHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc
Q 006057 20 VDDDPTCLLLLETLLRRCQYHVTT-T-----S---QAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE 85 (663)
Q Consensus 20 VDDD~~~r~iL~~lL~~~gy~V~t-a-----s---dg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~~ 85 (663)
..+-....++++.+-+..++.|.. . . +..+....+.+. ..|.|.+.-..+ +.--++.++.+++.
T Consensus 113 ~~~~~~~~ei~~~vr~~~~~pv~vKir~g~~~~~~~~~~~a~~l~~~--G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~ 190 (319)
T TIGR00737 113 LRDPDLIGKIVKAVVDAVDIPVTVKIRIGWDDAHINAVEAARIAEDA--GAQAVTLHGRTRAQGYSGEANWDIIARVKQA 190 (319)
T ss_pred hCCHHHHHHHHHHHHhhcCCCEEEEEEcccCCCcchHHHHHHHHHHh--CCCEEEEEcccccccCCCchhHHHHHHHHHc
Confidence 344455566666666666654432 1 1 123333444432 467776643322 11236777777777
Q ss_pred CCCcEEEEecCCChHHHHHHH-hcCCceEEe
Q 006057 86 MDLPVIMLSGNGDPKLVMKGI-THGACDYLL 115 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl-~aGA~DYLl 115 (663)
..+|||....-.+.+.+.+++ ..||+....
T Consensus 191 ~~ipvi~nGgI~~~~da~~~l~~~gad~Vmi 221 (319)
T TIGR00737 191 VRIPVIGNGDIFSPEDAKAMLETTGCDGVMI 221 (319)
T ss_pred CCCcEEEeCCCCCHHHHHHHHHhhCCCEEEE
Confidence 789999998888999999999 567777644
No 319
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=35.17 E-value=2.9e+02 Score=30.22 Aligned_cols=64 Identities=16% Similarity=0.189 Sum_probs=41.0
Q ss_pred CcEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 006057 14 GLRVLAVDDDPTC-----LLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLL 79 (663)
Q Consensus 14 glRVLIVDDD~~~-----r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLL 79 (663)
|-|+|||-|.... .+.+...|+..+.++..+. ...++.+.+++. ++|+||- ..+..-+++.
T Consensus 25 g~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGSviD~a 99 (357)
T cd08181 25 GKRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKF--NADFVIG---IGGGSPLDAA 99 (357)
T ss_pred CCEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHH
Confidence 3689988776542 2557777877776655443 244566666654 6888875 4666666666
Q ss_pred HHH
Q 006057 80 ELV 82 (663)
Q Consensus 80 e~I 82 (663)
+.+
T Consensus 100 K~i 102 (357)
T cd08181 100 KAI 102 (357)
T ss_pred HHH
Confidence 644
No 320
>PLN02275 transferase, transferring glycosyl groups
Probab=35.14 E-value=5.3e+02 Score=27.89 Aligned_cols=104 Identities=18% Similarity=0.164 Sum_probs=64.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEEC---CHHHHHHHHHhcCCCceEEEEeC-CC-CCCCHHHHHHHHhccCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTS---QAITALKLLRENKNKFDLVISDV-HM-PDMDGFKLLELVGLEMD 87 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~-V~tas---dg~EALelLre~k~~pDLVIlDv-~M-PdmDG~eLLe~Ir~~~d 87 (663)
.++.+||.|-+. ++.|++.+++.+.. |.... ..++.-.++. ..|+.++=. .. ...=+..+++.+ ...
T Consensus 261 ~i~l~ivG~G~~-~~~l~~~~~~~~l~~v~~~~~~~~~~~~~~~l~----~aDv~v~~~~s~~~e~~p~~llEAm--A~G 333 (371)
T PLN02275 261 RLLFIITGKGPQ-KAMYEEKISRLNLRHVAFRTMWLEAEDYPLLLG----SADLGVSLHTSSSGLDLPMKVVDMF--GCG 333 (371)
T ss_pred CeEEEEEeCCCC-HHHHHHHHHHcCCCceEEEcCCCCHHHHHHHHH----hCCEEEEeccccccccccHHHHHHH--HCC
Confidence 588999988764 56778888776643 44322 3455555554 358876411 00 111244566654 356
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~V 130 (663)
+|||.. .... ..+.++.|.++|+.. +.++|.+++..+
T Consensus 334 ~PVVa~-~~gg---~~eiv~~g~~G~lv~--~~~~la~~i~~l 370 (371)
T PLN02275 334 LPVCAV-SYSC---IGELVKDGKNGLLFS--SSSELADQLLEL 370 (371)
T ss_pred CCEEEe-cCCC---hHHHccCCCCeEEEC--CHHHHHHHHHHh
Confidence 899874 3222 456677899999986 588888877654
No 321
>cd08194 Fe-ADH6 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Proteins of this family have not been characterized. Their specific function is unknown. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contain different protein domains. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions.
Probab=34.76 E-value=2.7e+02 Score=30.69 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=39.6
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 006057 15 LRVLAVDDDPT----CLLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (663)
Q Consensus 15 lRVLIVDDD~~----~r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~ 81 (663)
-|+|||-|... ..+.+...|+..+..+..+. ...++.+.+++. .+|+||- ..+..-+++.+.
T Consensus 24 ~r~livt~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~~D~AKa 98 (375)
T cd08194 24 KRPLIVTDKVMVKLGLVDKLTDSLKKEGIESAIFDDVVSEPTDESVEEGVKLAKEG--GCDVIIA---LGGGSPIDTAKA 98 (375)
T ss_pred CeEEEEcCcchhhcchHHHHHHHHHHCCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 48998876543 33557777877776655442 244566666654 6888874 456666666665
Q ss_pred H
Q 006057 82 V 82 (663)
Q Consensus 82 I 82 (663)
+
T Consensus 99 i 99 (375)
T cd08194 99 I 99 (375)
T ss_pred H
Confidence 4
No 322
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=34.73 E-value=86 Score=28.53 Aligned_cols=24 Identities=21% Similarity=0.157 Sum_probs=14.2
Q ss_pred eCCHHHHHHHHHHHHhCCCEEEEE
Q 006057 21 DDDPTCLLLLETLLRRCQYHVTTT 44 (663)
Q Consensus 21 DDD~~~r~iL~~lL~~~gy~V~ta 44 (663)
|.+......+...|...||.+...
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~AT 31 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLFAT 31 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEEEC
Confidence 444444555566666778877543
No 323
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=34.67 E-value=87 Score=32.11 Aligned_cols=68 Identities=12% Similarity=0.035 Sum_probs=47.9
Q ss_pred CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCce
Q 006057 38 QYHVTTTSQAITALKLLRENKNKFDLVISDVHM---PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD 112 (663)
Q Consensus 38 gy~V~tasdg~EALelLre~k~~pDLVIlDv~M---PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~D 112 (663)
++.|.....-+++.+++.. ..|+|-+|... | ..--++++.|+... +++|.--...+....|.++|++-
T Consensus 45 ~~~V~ITPT~~ev~~l~~a---GadIIAlDaT~R~Rp-~~l~~li~~i~~~~---~l~MADist~ee~~~A~~~G~D~ 115 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAEA---GADIIALDATDRPRP-ETLEELIREIKEKY---QLVMADISTLEEAINAAELGFDI 115 (192)
T ss_dssp TSS--BS-SHHHHHHHHHC---T-SEEEEE-SSSS-S-S-HHHHHHHHHHCT---SEEEEE-SSHHHHHHHHHTT-SE
T ss_pred CCCeEECCCHHHHHHHHHc---CCCEEEEecCCCCCC-cCHHHHHHHHHHhC---cEEeeecCCHHHHHHHHHcCCCE
Confidence 4578888889999888875 58999999976 4 66677788887766 66777778889999999999653
No 324
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=34.67 E-value=3.6e+02 Score=28.68 Aligned_cols=103 Identities=12% Similarity=0.110 Sum_probs=61.6
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH---------HHHHH
Q 006057 14 GLRVLAVDDD-PTCLLLLETLLRRCQYHVT---TTSQAITALKLLRENKNKFDLVISDVHMPDMDG---------FKLLE 80 (663)
Q Consensus 14 glRVLIVDDD-~~~r~iL~~lL~~~gy~V~---tasdg~EALelLre~k~~pDLVIlDv~MPdmDG---------~eLLe 80 (663)
|..-+||=|- ......+...+++.|...+ .-+...+-++.+.+....|=.++. .++..| .++++
T Consensus 119 GvdgviipDLP~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~gFIY~vS---~~GvTG~~~~~~~~~~~~i~ 195 (263)
T CHL00200 119 GVKGLIIPDLPYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPGCIYLVS---TTGVTGLKTELDKKLKKLIE 195 (263)
T ss_pred CCeEEEecCCCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEc---CCCCCCCCccccHHHHHHHH
Confidence 4544455444 3444556666677675432 223345555555544323333333 344333 34456
Q ss_pred HHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC
Q 006057 81 LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119 (663)
Q Consensus 81 ~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs 119 (663)
++|+..++||++=-+-...+.+.++..+||++.++--.-
T Consensus 196 ~ir~~t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSal 234 (263)
T CHL00200 196 TIKKMTNKPIILGFGISTSEQIKQIKGWNINGIVIGSAC 234 (263)
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHH
Confidence 667767899988666677889999999999999887643
No 325
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=34.57 E-value=5.6e+02 Score=30.63 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=61.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.++++||.|.+. +..++.+.+..+. .|.....-.+...++. ..|+.++-- .-+.-|..+++.+. ..+|||
T Consensus 429 dirLvIVGdG~~-~eeLk~la~elgL~d~V~FlG~~~Dv~~~La----aADVfVlPS-~~EGfp~vlLEAMA--~GlPVV 500 (578)
T PRK15490 429 ATRFVLVGDGDL-RAEAQKRAEQLGILERILFVGASRDVGYWLQ----KMNVFILFS-RYEGLPNVLIEAQM--VGVPVI 500 (578)
T ss_pred CeEEEEEeCchh-HHHHHHHHHHcCCCCcEEECCChhhHHHHHH----hCCEEEEcc-cccCccHHHHHHHH--hCCCEE
Confidence 356777766543 4456666655543 3554444344444443 357776632 22444666666553 468998
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHH
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQH 129 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~ 129 (663)
..-. .. ..+.+..|.++|+.+|-+.+.|...+..
T Consensus 501 ATdv-GG---~~EiV~dG~nG~LVp~~D~~aLa~ai~l 534 (578)
T PRK15490 501 STPA-GG---SAECFIEGVSGFILDDAQTVNLDQACRY 534 (578)
T ss_pred EeCC-CC---cHHHcccCCcEEEECCCChhhHHHHHHH
Confidence 5432 22 3455678999999999988887776543
No 326
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=34.22 E-value=3.9e+02 Score=30.60 Aligned_cols=55 Identities=27% Similarity=0.257 Sum_probs=29.8
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEE---CCHHH-HHHHHHhcCCCceEEEEeCC
Q 006057 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTT---SQAIT-ALKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 14 glRVLIVDDD~~---~r~iL~~lL~~~gy~V~ta---sdg~E-ALelLre~k~~pDLVIlDv~ 69 (663)
|.+|++|+.|.. ..+.++.+....+..+... .++.+ +.+.++... ..|+||+|.-
T Consensus 123 g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~~-~~DvVIIDTA 184 (437)
T PRK00771 123 GLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKFK-KADVIIVDTA 184 (437)
T ss_pred CCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHhh-cCCEEEEECC
Confidence 568888887753 2334555555556655543 23332 222333222 3599999884
No 327
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=34.06 E-value=1.3e+02 Score=31.08 Aligned_cols=75 Identities=15% Similarity=0.074 Sum_probs=43.3
Q ss_pred cEEEEEeCCH------HHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006057 15 LRVLAVDDDP------TCLLLLETLLRRCQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD 87 (663)
Q Consensus 15 lRVLIVDDD~------~~r~iL~~lL~~~gy~V~tasd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~d 87 (663)
||||++-... .....+...|.+.|++|+.... .....+.+.. .+||+|.+-......-.+..+..+. ..
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~~~--~~~diih~~~~~~~~~~~~~~~~~~--~~ 76 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKIEI--INADIVHLHWIHGGFLSIEDLSKLL--DR 76 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhChhc--ccCCEEEEEccccCccCHHHHHHHH--cC
Confidence 6788886543 4566777888888998775443 3233344433 4799998744333333333333332 46
Q ss_pred CcEEEE
Q 006057 88 LPVIML 93 (663)
Q Consensus 88 IPVIIL 93 (663)
+|+|+.
T Consensus 77 ~~~v~~ 82 (365)
T cd03825 77 KPVVWT 82 (365)
T ss_pred CCEEEE
Confidence 787654
No 328
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=33.93 E-value=2.2e+02 Score=29.82 Aligned_cols=71 Identities=17% Similarity=0.169 Sum_probs=42.6
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC----EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHhccCCCcE
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQY----HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGF-KLLELVGLEMDLPV 90 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy----~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~-eLLe~Ir~~~dIPV 90 (663)
|++.|.+++..+...++.|...+. ++...+..++++..+. .+|.+++|... .|-. ++++.++..+.--|
T Consensus 71 R~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~----~iDF~vVDc~~--~d~~~~vl~~~~~~~~GaV 144 (218)
T PF07279_consen 71 RHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK----GIDFVVVDCKR--EDFAARVLRAAKLSPRGAV 144 (218)
T ss_pred eEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhcc----CCCEEEEeCCc--hhHHHHHHHHhccCCCceE
Confidence 455555554456666666665553 3334444666776553 58999999985 4445 67777665544444
Q ss_pred EE
Q 006057 91 IM 92 (663)
Q Consensus 91 II 92 (663)
|+
T Consensus 145 VV 146 (218)
T PF07279_consen 145 VV 146 (218)
T ss_pred EE
Confidence 44
No 329
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=33.71 E-value=2.2e+02 Score=29.26 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=50.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPD-MDG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPd-mDG--~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
...+..+.+... ..-+|++|+.--+ +.| +++++.+.....+|||+=.+-...+.+.++.+.||+..+.
T Consensus 142 ~~~~~~~~~~~~--g~~ii~tdI~~dGt~~G~d~eli~~i~~~~~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 142 SLEEVRDFLNSF--DYGLIVLDIHSVGTMKGPNLELLTKTLELSEHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred cHHHHHHHHHhc--CCEEEEEECCccccCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 444455555432 2378999997643 233 6788888777789999888888899999999999998775
No 330
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=33.70 E-value=3.4e+02 Score=29.67 Aligned_cols=91 Identities=14% Similarity=0.027 Sum_probs=58.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhC----C-C-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 16 RVLAVDDDPTCLLLLETLLRRC----Q-Y-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~----g-y-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
.|||=|.+-...-.+...+++. . . ..+.+.+.+++.+.+.. .+|+|++|=.-|+ ++-+.+.....-.
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~a---GaDiImLDnmspe----~l~~av~~~~~~~ 250 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALAH---GAQSVLLDNFTLD----MMREAVRVTAGRA 250 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHHc---CCCEEEECCCCHH----HHHHHHHhhcCCe
Confidence 3777777765544444444322 1 2 23578899999999864 5899999964433 3333332222234
Q ss_pred EEEEecCCChHHHHHHHhcCCceE
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DY 113 (663)
+|-.|+.-..+.+.+..+.|++..
T Consensus 251 ~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 251 VLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEE
Confidence 566788888888888888888754
No 331
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=33.67 E-value=1.1e+02 Score=21.94 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=32.1
Q ss_pred eeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhh
Q 006057 203 VWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 249 (663)
Q Consensus 203 ~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQk 249 (663)
.||.+-+..|+.++..+|... =+.|.+.| ++-|..+|..|.++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~--w~~Ia~~~--~~rs~~~~~~~~~~ 43 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNN--WEKIAKEL--PGRTPKQCRERWRN 43 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCC--HHHHHhHc--CCCCHHHHHHHHHH
Confidence 399999999999999999422 35677776 45788888776443
No 332
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=33.49 E-value=2.5e+02 Score=29.44 Aligned_cols=38 Identities=18% Similarity=0.368 Sum_probs=30.4
Q ss_pred HHHHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCceE
Q 006057 76 FKLLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 76 ~eLLe~Ir~~~--dIPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
++.++.++... ++|||...+-.+.+.+.+++.+||+..
T Consensus 230 ~~~v~~i~~~~~~~ipiia~GGI~~~~da~~~l~~GAd~V 269 (289)
T cd02810 230 LRWVARLAARLQLDIPIIGVGGIDSGEDVLEMLMAGASAV 269 (289)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCccHh
Confidence 45566666554 799999999889999999999998754
No 333
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=33.45 E-value=2.8e+02 Score=30.49 Aligned_cols=97 Identities=19% Similarity=0.016 Sum_probs=57.5
Q ss_pred EEEEeCCHHHHHHHHHHH-------HhCCC---EEEEECCHHHHHHHHH---hcCCCceEEEEeCC--CCCC---CHHHH
Q 006057 17 VLAVDDDPTCLLLLETLL-------RRCQY---HVTTTSQAITALKLLR---ENKNKFDLVISDVH--MPDM---DGFKL 78 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL-------~~~gy---~V~tasdg~EALelLr---e~k~~pDLVIlDv~--MPdm---DG~eL 78 (663)
|||=|.+-...-.+...+ +..++ ..+.+.+.++|.+.+. ..+..+|+|++|-. -|+. +--++
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~~~agaDiImLDnm~~~~~~~~~~~e~l 252 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSDTKTSLTRVMLDNMVVPLENGDVDVSML 252 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhcccccCCCCEEEeCCCcccccccCCCHHHH
Confidence 777777654433333332 23333 2447888999988886 11135899999965 2221 33333
Q ss_pred HHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE
Q 006057 79 LELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 79 Le~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
-+.+........|-.|+.-..+.+.+....|++..
T Consensus 253 ~~av~~~~~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 253 KEAVELINGRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred HHHHHhhCCCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 33333222233467788888888888888898754
No 334
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=33.41 E-value=2e+02 Score=30.91 Aligned_cols=79 Identities=13% Similarity=0.162 Sum_probs=48.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH--HHHHHHhccCCCc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGF--KLLELVGLEMDLP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~-V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~--eLLe~Ir~~~dIP 89 (663)
+.+|..||-++...+..++-++..+.. +. .+.+..+.... ....||+|++| |...|+ ++++.+.....-.
T Consensus 195 ~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~---~~~~~D~Vv~d---PPr~G~~~~~~~~l~~~~~~~ 268 (315)
T PRK03522 195 GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA---QGEVPDLVLVN---PPRRGIGKELCDYLSQMAPRF 268 (315)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---cCCCCeEEEEC---CCCCCccHHHHHHHHHcCCCe
Confidence 358999999998888888877776642 33 45566554321 12369999999 444553 5656664332234
Q ss_pred EEEEecCCC
Q 006057 90 VIMLSGNGD 98 (663)
Q Consensus 90 VIILSA~~d 98 (663)
||.++....
T Consensus 269 ivyvsc~p~ 277 (315)
T PRK03522 269 ILYSSCNAQ 277 (315)
T ss_pred EEEEECCcc
Confidence 555555433
No 335
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=33.30 E-value=2.9e+02 Score=31.05 Aligned_cols=87 Identities=13% Similarity=0.064 Sum_probs=48.4
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC-CCCCCHH--HHHHHHhc-c-C
Q 006057 15 LRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH-MPDMDGF--KLLELVGL-E-M 86 (663)
Q Consensus 15 lRVLIVDDD~~---~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~-MPdmDG~--eLLe~Ir~-~-~ 86 (663)
.+|.+|..|.. ..+.|+.+-+..+..+..+.+..+....+.+. ..+|+||+|.- +...|.. +.+..+.. . +
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l-~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~ 246 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAEL-RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTP 246 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHh-cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCC
Confidence 47877776654 34556666666677777666655554555443 25799999873 2222332 23333321 1 1
Q ss_pred CCcEEEEecCCChHHH
Q 006057 87 DLPVIMLSGNGDPKLV 102 (663)
Q Consensus 87 dIPVIILSA~~d~e~v 102 (663)
.-.++++++....+.+
T Consensus 247 ~~~lLVLsAts~~~~l 262 (374)
T PRK14722 247 VQRLLLLNATSHGDTL 262 (374)
T ss_pred CeEEEEecCccChHHH
Confidence 2347777776655443
No 336
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=33.22 E-value=82 Score=33.00 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=43.4
Q ss_pred CcEEEEEeCCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCC--CCC-----CHHHHHHHHhcc
Q 006057 14 GLRVLAVDDDPTCL-LLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHM--PDM-----DGFKLLELVGLE 85 (663)
Q Consensus 14 glRVLIVDDD~~~r-~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~M--Pdm-----DG~eLLe~Ir~~ 85 (663)
..+|.|+|..|... ..+.+.|...|..|+...+..-+. +..+ ..|.||+-.+. +++ -|-..+..+.+.
T Consensus 133 ~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~~--~m~~--~vd~VliGad~v~~nG~v~nk~Gt~~~a~~Ak~ 208 (282)
T PF01008_consen 133 KFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVGY--VMPR--DVDKVLIGADAVLANGGVVNKVGTLQLALAAKE 208 (282)
T ss_dssp EEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHHH--HHHC--TESEEEEE-SEEETTS-EEEETTHHHHHHHHHH
T ss_pred eEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHHH--HHHH--hCCeeEEeeeEEecCCCEeehhhHHHHHHHHHh
Confidence 46788888776432 235556666788888777654332 2221 38999986654 333 244455556666
Q ss_pred CCCcEEEEecC
Q 006057 86 MDLPVIMLSGN 96 (663)
Q Consensus 86 ~dIPVIILSA~ 96 (663)
.++||++++..
T Consensus 209 ~~vPv~v~~~~ 219 (282)
T PF01008_consen 209 FNVPVYVLAES 219 (282)
T ss_dssp TT-EEEEE--G
T ss_pred hCCCEEEEccc
Confidence 88999998753
No 337
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=33.10 E-value=4.2e+02 Score=27.61 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=34.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
+.+|..||-++...+..++-+...+..+. ..+..+.+.... ...+|+||+|-
T Consensus 110 ~~~v~~vDis~~al~~A~~N~~~~~~~~~-~~D~~~~l~~~~--~~~fDlVv~NP 161 (251)
T TIGR03704 110 GIELHAADIDPAAVRCARRNLADAGGTVH-EGDLYDALPTAL--RGRVDILAANA 161 (251)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCEEE-Eeechhhcchhc--CCCEeEEEECC
Confidence 46899999999988888888777665543 334443332111 23699999984
No 338
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=33.08 E-value=3.2e+02 Score=28.09 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=57.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.++++|+.+.+. ...+++.++..+. .|.......+..+++. ..|++++--.. +.-|..+++.+. ..+|||
T Consensus 219 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~ad~~v~~s~~-e~~~~~~~Ea~a--~G~PvI 290 (360)
T cd04951 219 DIKLLIAGDGPL-RATLERLIKALGLSNRVKLLGLRDDIAAYYN----AADLFVLSSAW-EGFGLVVAEAMA--CELPVV 290 (360)
T ss_pred CeEEEEEcCCCc-HHHHHHHHHhcCCCCcEEEecccccHHHHHH----hhceEEecccc-cCCChHHHHHHH--cCCCEE
Confidence 456677765543 2345555554432 3444443334444443 24666653332 233566666553 457887
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
+ +.... ..+.+.. .+++..|-+.+++...+..++.
T Consensus 291 ~-~~~~~---~~e~i~~--~g~~~~~~~~~~~~~~i~~ll~ 325 (360)
T cd04951 291 A-TDAGG---VREVVGD--SGLIVPISDPEALANKIDEILK 325 (360)
T ss_pred E-ecCCC---hhhEecC--CceEeCCCCHHHHHHHHHHHHh
Confidence 5 32222 2222222 5788899999999999988874
No 339
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=33.00 E-value=1.5e+02 Score=33.81 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=44.1
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
+.+..++.. .+|+|.+|..-.. ..-.+.+++|+.. +++|||+ ..-...+.+..++++||+.+.
T Consensus 227 ~r~~~L~~a---G~d~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 227 ERAEALVKA---GVDVIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred HHHHHHHHh---CCCEEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 445544432 5899999995543 3456677777765 6888886 444567788899999998874
No 340
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=32.98 E-value=5.8e+02 Score=26.48 Aligned_cols=91 Identities=13% Similarity=0.097 Sum_probs=57.0
Q ss_pred EeCCHHHHHHHHHHHHhCCCEEEE-E-----CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEE
Q 006057 20 VDDDPTCLLLLETLLRRCQYHVTT-T-----SQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 20 VDDD~~~r~iL~~lL~~~gy~V~t-a-----sdg~EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir~~~dIPVII 92 (663)
..|.....++++.+- +.+..|.. . .+..+..+.+.+. ..|.|-.+...++ .--++.++.++ .++|||.
T Consensus 122 l~~p~~l~eiv~avr-~~~~pVsvKir~g~~~~~~~la~~l~~a--G~d~ihv~~~~~g~~ad~~~I~~i~--~~ipVIg 196 (233)
T cd02911 122 LKDPERLSEFIKALK-ETGVPVSVKIRAGVDVDDEELARLIEKA--GADIIHVDAMDPGNHADLKKIRDIS--TELFIIG 196 (233)
T ss_pred cCCHHHHHHHHHHHH-hcCCCEEEEEcCCcCcCHHHHHHHHHHh--CCCEEEECcCCCCCCCcHHHHHHhc--CCCEEEE
Confidence 344444555555553 35554441 1 2444554555543 5787766655543 22356666665 5799998
Q ss_pred EecCCChHHHHHHHhcCCceEEe
Q 006057 93 LSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.-.-.+.+.+.+++..||+...+
T Consensus 197 nGgI~s~eda~~~l~~GaD~Vmi 219 (233)
T cd02911 197 NNSVTTIESAKEMFSYGADMVSV 219 (233)
T ss_pred ECCcCCHHHHHHHHHcCCCEEEE
Confidence 88888999999999999887643
No 341
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=32.67 E-value=3.5e+02 Score=29.67 Aligned_cols=56 Identities=21% Similarity=0.332 Sum_probs=41.7
Q ss_pred HHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCce------EEeC-CCCHHHHHHHHHHHHHh
Q 006057 78 LLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACD------YLLK-PVRIEELKNIWQHVVRR 133 (663)
Q Consensus 78 LLe~Ir~~~--dIPVIILSA~~d~e~v~kAl~aGA~D------YLlK-Pvs~eeL~~~~q~Vlrr 133 (663)
.++.++... ++|||.+.+-.+.+.+.+.+.+||+. ++.+ |.-..++..-+..++++
T Consensus 278 ~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l~~ 342 (344)
T PRK05286 278 VIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLLRR 342 (344)
T ss_pred HHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 445555443 79999999999999999999999885 3555 77667777766666654
No 342
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=32.64 E-value=1.2e+02 Score=33.43 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=41.4
Q ss_pred ceEEEEeCCCCCC-CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 61 FDLVISDVHMPDM-DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 61 pDLVIlDv~MPdm-DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.|+|++|.--... .-++.+++++.....|+|+.-.-...+.+..++++||+.+.+-
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 6999999854432 3456677777766667666665678889999999999998644
No 343
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=32.64 E-value=3.1e+02 Score=28.77 Aligned_cols=75 Identities=5% Similarity=0.030 Sum_probs=42.7
Q ss_pred cEEEEEeCCH-HHHHHHHHHHHhCCCEEEEE-------------CCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHH
Q 006057 15 LRVLAVDDDP-TCLLLLETLLRRCQYHVTTT-------------SQAITALKLLREN-KNKFDLVISDVHMPDMDGFKLL 79 (663)
Q Consensus 15 lRVLIVDDD~-~~r~iL~~lL~~~gy~V~ta-------------sdg~EALelLre~-k~~pDLVIlDv~MPdmDG~eLL 79 (663)
-||-|+-... ..-+.+.++|+..|++|... -+.+...+++++. ...+|.|++-+ -.+..++++
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~~~~~aDAifisC--TnLrt~~vi 198 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAAFDPDADALFLSC--TALRAATCA 198 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHhcCCCCCEEEEeC--CCchhHHHH
Confidence 3777887663 44567888888888887643 1334444444432 12456555532 123455566
Q ss_pred HHHhccCCCcEE
Q 006057 80 ELVGLEMDLPVI 91 (663)
Q Consensus 80 e~Ir~~~dIPVI 91 (663)
+.+.....+|||
T Consensus 199 ~~lE~~lGkPVl 210 (239)
T TIGR02990 199 QRIEQAIGKPVV 210 (239)
T ss_pred HHHHHHHCCCEE
Confidence 666555666764
No 344
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=32.46 E-value=2.9e+02 Score=30.49 Aligned_cols=63 Identities=13% Similarity=0.167 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEEECC---------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 006057 15 LRVLAVDDDPTC----LLLLETLLRRCQYHVTTTSQ---------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (663)
Q Consensus 15 lRVLIVDDD~~~----r~iL~~lL~~~gy~V~tasd---------g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~ 81 (663)
-|+|||-|.... .+.++..|+..+.++..+.. .+++.+.+++. ++|+||- +.+..-+++.+.
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~ 103 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVFKKE--GCDFIIS---IGGGSPHDCAKA 103 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcHHHHHHHH
Confidence 488888776442 34577778776766655432 34555666653 6888874 456666666654
Q ss_pred H
Q 006057 82 V 82 (663)
Q Consensus 82 I 82 (663)
+
T Consensus 104 i 104 (377)
T cd08176 104 I 104 (377)
T ss_pred H
Confidence 4
No 345
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.45 E-value=4.4e+02 Score=29.70 Aligned_cols=91 Identities=20% Similarity=0.138 Sum_probs=53.9
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCCCHHHH---HHHHhc-
Q 006057 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH--MPDMDGFKL---LELVGL- 84 (663)
Q Consensus 14 glRVLIVDDD~~---~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~--MPdmDG~eL---Le~Ir~- 84 (663)
+.+|++|.-|+. ..+.|+.+.+..+..+..+.+..+....+... ..+|+||+|.- ++ .+-..+ .+.+..
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~-~~~DlVLIDTaGr~~-~~~~~l~el~~~l~~~ 283 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQS-KDFDLVLVDTIGKSP-KDFMKLAEMKELLNAC 283 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHh-CCCCEEEEcCCCCCc-cCHHHHHHHHHHHHhc
Confidence 568999987763 23335555555677777777776665555553 46999999984 22 243322 223332
Q ss_pred cCC-CcEEEEecCCChHHHHHHH
Q 006057 85 EMD-LPVIMLSGNGDPKLVMKGI 106 (663)
Q Consensus 85 ~~d-IPVIILSA~~d~e~v~kAl 106 (663)
.++ -.++++++......+.+.+
T Consensus 284 ~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 284 GRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred CCCCeEEEEEcCCCCHHHHHHHH
Confidence 223 3567788877665555443
No 346
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=32.45 E-value=3.3e+02 Score=32.37 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=33.9
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC
Q 006057 14 GLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 14 glRVLIVDDD~~~---r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~ 69 (663)
+.+|.+|+-|... .+.+..+-+..+..+..+.+..+....++.. ..+|+||+|.-
T Consensus 380 gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~~~DLVLIDTa 437 (559)
T PRK12727 380 PRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-RDYKLVLIDTA 437 (559)
T ss_pred CCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-ccCCEEEecCC
Confidence 4578888876522 2334434344466666666666666666553 36899999973
No 347
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=32.43 E-value=2.7e+02 Score=30.56 Aligned_cols=55 Identities=9% Similarity=0.027 Sum_probs=39.3
Q ss_pred CceEEEEeCCC------CCCCH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 60 KFDLVISDVHM------PDMDG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 60 ~pDLVIlDv~M------PdmDG--~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.+|+|-+.... +...| +++++.+++...+|||......+.+.+.++++.|.+|++
T Consensus 240 gvD~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 240 GVDLIDVSSGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred CCCEEEeCCCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCChH
Confidence 46776654432 11233 467778887778999998888888999999999977653
No 348
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=32.41 E-value=2.6e+02 Score=30.58 Aligned_cols=39 Identities=18% Similarity=0.265 Sum_probs=31.4
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.++.+.+++...+|||..-...+.+.+.++++.|..|++
T Consensus 265 ~~~~~~ik~~v~iPVi~~G~i~~~~~a~~~i~~g~~D~V 303 (353)
T cd02930 265 AWATAKLKRAVDIPVIASNRINTPEVAERLLADGDADMV 303 (353)
T ss_pred HHHHHHHHHhCCCCEEEcCCCCCHHHHHHHHHCCCCChh
Confidence 455677877778999988777888999999999977764
No 349
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=32.30 E-value=57 Score=32.83 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=42.1
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE
Q 006057 47 AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
.+.+++.+++. +||+|=+ ||+ ---++++.+++...+|||.=.=-.+.+.+.+|+++||...
T Consensus 106 l~~~~~~i~~~--~PD~vEi---lPg-~~p~vi~~i~~~~~~PiIAGGLI~~~e~v~~al~aGa~aV 166 (175)
T PF04309_consen 106 LETGIKQIEQS--KPDAVEI---LPG-VMPKVIKKIREETNIPIIAGGLIRTKEDVEEALKAGADAV 166 (175)
T ss_dssp HHHHHHHHHHH--T-SEEEE---ESC-CHHHHHCCCCCCCSS-EEEESS--SHHHHHHHCCTTCEEE
T ss_pred HHHHHHHHhhc--CCCEEEE---chH-HHHHHHHHHHHhcCCCEEeecccCCHHHHHHHHHcCCEEE
Confidence 34466777764 7998865 787 4446777777777899886555567888999999999875
No 350
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=32.29 E-value=5.1e+02 Score=25.61 Aligned_cols=85 Identities=11% Similarity=0.005 Sum_probs=47.5
Q ss_pred HHHHHHHHhCCCEEEEE-CCH----HHHHHHHHhcCCCceEEEEeCCCC----CCCHHHHHHHHhccCCCcEEEEecCCC
Q 006057 28 LLLETLLRRCQYHVTTT-SQA----ITALKLLRENKNKFDLVISDVHMP----DMDGFKLLELVGLEMDLPVIMLSGNGD 98 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~ta-sdg----~EALelLre~k~~pDLVIlDv~MP----dmDG~eLLe~Ir~~~dIPVIILSA~~d 98 (663)
..+.+..++.|..+... .+. +++..+... .+|+|-+.-... ...+++.++.++.....+.|++.+--.
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~---g~d~v~~~pg~~~~~~~~~~~~~i~~l~~~~~~~~i~v~GGI~ 168 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLINVKDKVKRAKELKEL---GADYIGVHTGLDEQAKGQNPFEDLQTILKLVKEARVAVAGGIN 168 (206)
T ss_pred HHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHc---CCCEEEEcCCcCcccCCCCCHHHHHHHHHhcCCCcEEEECCcC
Confidence 44455566667766532 222 344444332 578887642110 112444555554332334555566667
Q ss_pred hHHHHHHHhcCCceEEe
Q 006057 99 PKLVMKGITHGACDYLL 115 (663)
Q Consensus 99 ~e~v~kAl~aGA~DYLl 115 (663)
.+.+..++++||+.++.
T Consensus 169 ~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 169 LDTIPDVIKLGPDIVIV 185 (206)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 78899999999997765
No 351
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=32.14 E-value=3e+02 Score=30.67 Aligned_cols=92 Identities=11% Similarity=0.038 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC----CHHHHHHHHhc-cCCCcEEEEecCCCh
Q 006057 25 TCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM----DGFKLLELVGL-EMDLPVIMLSGNGDP 99 (663)
Q Consensus 25 ~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdm----DG~eLLe~Ir~-~~dIPVIILSA~~d~ 99 (663)
.--+.+...|...||+.+.. ...+|||++....... ..+++++.++. .++++||+...+..
T Consensus 11 ~ds~~~~~~l~~~g~~~~~~-------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p~~~vvvgGc~a~- 76 (414)
T TIGR01579 11 YESESLKNQLIQKGYEVVPD-------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNPTAKIIVTGCYAQ- 76 (414)
T ss_pred HHHHHHHHHHHHCcCEECCC-------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCCCcEEEEECCccc-
Confidence 34567788888888886642 1247999998765543 35677776654 35566665443333
Q ss_pred HHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 006057 100 KLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (663)
Q Consensus 100 e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~V 130 (663)
....++.++...|++..+-....+...++..
T Consensus 77 ~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~~ 107 (414)
T TIGR01579 77 SNPKELADLKDVDLVLGNKEKDKINKLLSLG 107 (414)
T ss_pred cCHHHHhcCCCCcEEECCCCHHHHHHHHHHH
Confidence 2333445566788999998888888777654
No 352
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=32.07 E-value=2.5e+02 Score=28.02 Aligned_cols=76 Identities=13% Similarity=0.155 Sum_probs=49.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC--CCEEEEE----CC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRC--QYHVTTT----SQ--AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL 84 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~--gy~V~ta----sd--g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~ 84 (663)
.+.+|.++-..+...+.+.+.|++. +.+|..+ .. .++.++.+.+. .+|+|++-+-+|...-+ +...+.
T Consensus 47 ~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I~~s--~~dil~VglG~PkQE~~--~~~~~~ 122 (177)
T TIGR00696 47 EKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKIARS--GAGIVFVGLGCPKQEIW--MRNHRH 122 (177)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHHHHc--CCCEEEEEcCCcHhHHH--HHHhHH
Confidence 3679999999999988888888765 3444432 11 12234556543 79999999999987643 333433
Q ss_pred cCCCcEEE
Q 006057 85 EMDLPVIM 92 (663)
Q Consensus 85 ~~dIPVII 92 (663)
....+|++
T Consensus 123 ~~~~~v~~ 130 (177)
T TIGR00696 123 LKPDAVMI 130 (177)
T ss_pred hCCCcEEE
Confidence 33344543
No 353
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=31.75 E-value=6.3e+02 Score=26.63 Aligned_cols=112 Identities=22% Similarity=0.284 Sum_probs=73.9
Q ss_pred CcEEEEEeCCHHHHH--HHHHHHHhCCC----EEEEECCHHHHHHHHHhcCCCceEEEEeC-------CCCCCCHHHHHH
Q 006057 14 GLRVLAVDDDPTCLL--LLETLLRRCQY----HVTTTSQAITALKLLRENKNKFDLVISDV-------HMPDMDGFKLLE 80 (663)
Q Consensus 14 glRVLIVDDD~~~r~--iL~~lL~~~gy----~V~tasdg~EALelLre~k~~pDLVIlDv-------~MPdmDG~eLLe 80 (663)
|.-|+.+|.-..-|- .+++++.+..| -..-|++.+|++...+. .+|+|=.-+ ..|...-|++++
T Consensus 98 Ga~IIA~DaT~R~RP~~~~~~~i~~~k~~~~l~MAD~St~ee~l~a~~~---G~D~IGTTLsGYT~~~~~~~~pDf~lvk 174 (229)
T COG3010 98 GADIIAFDATDRPRPDGDLEELIARIKYPGQLAMADCSTFEEGLNAHKL---GFDIIGTTLSGYTGYTEKPTEPDFQLVK 174 (229)
T ss_pred CCcEEEeecccCCCCcchHHHHHHHhhcCCcEEEeccCCHHHHHHHHHc---CCcEEecccccccCCCCCCCCCcHHHHH
Confidence 566888874321111 34444444322 23467889999877654 588774322 345566788998
Q ss_pred HHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHH
Q 006057 81 LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQH 129 (663)
Q Consensus 81 ~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP--vs~eeL~~~~q~ 129 (663)
.+.. .+++||.=..+..++.+.++++.||+...+-- -+++++-.....
T Consensus 175 ~l~~-~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITRp~~It~~F~~ 224 (229)
T COG3010 175 QLSD-AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITRPEEITQWFVD 224 (229)
T ss_pred HHHh-CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCCHHHHHHHHHH
Confidence 8755 78899988889999999999999999886654 334555444433
No 354
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=31.75 E-value=3.6e+02 Score=27.84 Aligned_cols=85 Identities=13% Similarity=0.076 Sum_probs=55.5
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCC----C--CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE----
Q 006057 44 TSQAITALKLLRENKNKFDLVISDVHM----P--DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY---- 113 (663)
Q Consensus 44 asdg~EALelLre~k~~pDLVIlDv~M----P--dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DY---- 113 (663)
+.+..++.+... ...|.|.+--.. + .--|+++++++.....+||+.+.+- ..+.+.+++++||+++
T Consensus 118 ~~s~~~a~~A~~---~gaDYv~~Gpv~t~tK~~~~p~gl~~l~~~~~~~~iPvvAIGGI-~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 118 LRDRHGAMEIGE---LRPDYLFFGKLGADNKPEAHPRNLSLAEWWAEMIEIPCIVQAGS-DLASAVEVAETGAEFVALER 193 (221)
T ss_pred CCCHHHHHHhhh---cCCCEEEECCCCCCCCCCCCCCChHHHHHHHHhCCCCEEEEeCC-CHHHHHHHHHhCCCEEEEhH
Confidence 345666666443 257888774332 1 1247888887776778999999875 5567888999999986
Q ss_pred -EeCCCCHHHHHHHHHHHHH
Q 006057 114 -LLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 114 -LlKPvs~eeL~~~~q~Vlr 132 (663)
|.+.-++.+-...|...++
T Consensus 194 ai~~~~dp~~a~~~~~~~~~ 213 (221)
T PRK06512 194 AVFDAHDPPLAVAQANALLD 213 (221)
T ss_pred HhhCCCCHHHHHHHHHHHHh
Confidence 4455555555555554443
No 355
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=31.75 E-value=2.1e+02 Score=31.95 Aligned_cols=71 Identities=18% Similarity=0.159 Sum_probs=47.3
Q ss_pred CceEEEEeCCCCCCCHHHH-HHHHhccCCCcEEEEec-CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 60 KFDLVISDVHMPDMDGFKL-LELVGLEMDLPVIMLSG-NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eL-Le~Ir~~~dIPVIILSA-~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
..+.+|++..-...--+|- +..+ .....||.... ..+...+...++.|+++.+++|-++.+++.....+-+
T Consensus 88 ~~~~viv~~~dW~iIPlEnlIA~~--~~~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~~ 160 (344)
T PRK02290 88 EVDYVIVEGRDWTIIPLENLIADL--GQSGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIEE 160 (344)
T ss_pred cCCEEEEECCCCcEecHHHHHhhh--cCCceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHhc
Confidence 3477777766554444443 3344 23445554433 3455677888999999999999999999988766543
No 356
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.74 E-value=2.8e+02 Score=30.04 Aligned_cols=91 Identities=18% Similarity=0.038 Sum_probs=57.1
Q ss_pred EEEEeCCHHHHHHHHHHHH----hCCC---EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 17 VLAVDDDPTCLLLLETLLR----RCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~----~~gy---~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
|||=|.+-...-.+.+.++ ...+ ..+.+.+.++|.+.+.. .+|+|++|-.-| -++-+.+......-
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~~---gaDiI~LDn~s~----e~l~~av~~~~~~~ 239 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALEL---GVDAVLLDNMTP----DTLREAVAIVAGRA 239 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHHc---CCCEEEeCCCCH----HHHHHHHHHhCCCc
Confidence 6665665443333444443 3332 34578899999999864 589999996433 33433333222222
Q ss_pred EEEEecCCChHHHHHHHhcCCceEE
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
+|..|+.-..+.+.+....|++.+-
T Consensus 240 ~leaSGGI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 240 ITEASGRITPETAPAIAASGVDLIS 264 (281)
T ss_pred eEEEECCCCHHHHHHHHhcCCCEEE
Confidence 3778888888889888889987653
No 357
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=31.66 E-value=3.1e+02 Score=33.75 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=64.3
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC---C--HHHHHHHHh-c-
Q 006057 15 LRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM---D--GFKLLELVG-L- 84 (663)
Q Consensus 15 lRVLIVDDD~~---~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdm---D--G~eLLe~Ir-~- 84 (663)
.+|.+|.-|.. ..+.|+.+-+..+..+..+.+..+..+.+...+ .+|+||+|. ++. + -.+.+..+. .
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~-~~D~VLIDT--AGRs~~d~~l~eel~~l~~~~ 292 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALG-DKHLVLIDT--VGMSQRDRNVSEQIAMLCGVG 292 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhc-CCCEEEEeC--CCCCccCHHHHHHHHHHhccC
Confidence 47888887753 235566666666777777778888777776543 579999997 332 2 223333332 1
Q ss_pred cCCCcEEEEecCCChHHH---HHHHhc----CCceEEeCCCCH-HHHHHHHHHHH
Q 006057 85 EMDLPVIMLSGNGDPKLV---MKGITH----GACDYLLKPVRI-EELKNIWQHVV 131 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v---~kAl~a----GA~DYLlKPvs~-eeL~~~~q~Vl 131 (663)
.+.-.++++++....+.+ .+.+.. +.+++|.-=++. ..+-.++..+.
T Consensus 293 ~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i~~ 347 (767)
T PRK14723 293 RPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDTVI 347 (767)
T ss_pred CCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHHHH
Confidence 234456777776554433 344543 566665444432 33333444333
No 358
>PRK05670 anthranilate synthase component II; Provisional
Probab=31.64 E-value=61 Score=32.03 Aligned_cols=48 Identities=15% Similarity=0.115 Sum_probs=33.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIl 66 (663)
|||||....+-..+.+.|++.|+++............+.. ..||.||+
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dglIl 49 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRNDEITLEEIEA--LNPDAIVL 49 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEECCCCCHHHHHh--CCCCEEEE
Confidence 8999999888899999999999887765442211222222 24787776
No 359
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=31.64 E-value=3.9e+02 Score=30.51 Aligned_cols=54 Identities=31% Similarity=0.377 Sum_probs=31.0
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEeCC
Q 006057 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTS---QAI----TALKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 14 glRVLIVDDD~~---~r~iL~~lL~~~gy~V~tas---dg~----EALelLre~k~~pDLVIlDv~ 69 (663)
|.+|++|+-|.. ..+.|+.+-...+..+..+. ++. ++++.+.. ..+|+||+|.-
T Consensus 128 g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~~~~--~~~DvVIIDTa 191 (428)
T TIGR00959 128 GKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEYAKE--NGFDVVIVDTA 191 (428)
T ss_pred CCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHHHHh--cCCCEEEEeCC
Confidence 678999998842 23334444455555554432 332 33334333 36899999983
No 360
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=31.54 E-value=4.3e+02 Score=29.18 Aligned_cols=87 Identities=16% Similarity=0.034 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEeCCCC-----------------------CCCHHH
Q 006057 26 CLLLLETLLRRCQYHVTT--T---SQAITALKLLRENKNKFDLVISDVHMP-----------------------DMDGFK 77 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~t--a---sdg~EALelLre~k~~pDLVIlDv~MP-----------------------dmDG~e 77 (663)
..+.|+.+.+..+..|.. + ...++|..+.+ . .+|.|.+.-+-. +....+
T Consensus 174 ~le~i~~i~~~~~vPVivK~~g~g~s~~~a~~l~~-~--Gvd~I~Vsg~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~ 250 (352)
T PRK05437 174 WLDNIAEIVSALPVPVIVKEVGFGISKETAKRLAD-A--GVKAIDVAGAGGTSWAAIENYRARDDRLASYFADWGIPTAQ 250 (352)
T ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCcHHHHHHHHH-c--CCCEEEECCCCCCCccchhhhhhhccccccccccccCCHHH
Confidence 346777777766655442 2 34555544443 2 588888754311 111223
Q ss_pred HHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 78 LLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 78 LLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.+..++.. .++|||...+-.....+.+++..||+.+..
T Consensus 251 ~l~~i~~~~~~ipvia~GGI~~~~dv~k~l~~GAd~v~i 289 (352)
T PRK05437 251 SLLEARSLLPDLPIIASGGIRNGLDIAKALALGADAVGM 289 (352)
T ss_pred HHHHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 44444444 479999999999999999999999987643
No 361
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=31.50 E-value=1.8e+02 Score=28.65 Aligned_cols=84 Identities=18% Similarity=0.223 Sum_probs=47.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCE---------------EEEECCHHHHHHHHHh--cCCCceEEEEeC-CCCCCC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYH---------------VTTTSQAITALKLLRE--NKNKFDLVISDV-HMPDMD 74 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~---------------V~tasdg~EALelLre--~k~~pDLVIlDv-~MPdmD 74 (663)
.++||||+..-..+.+.+.+.|+...+. |+....+. ....+.+ ....||+||||= |.-|-.
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at-~~~~~~~p~~~~~yd~II~DEcH~~Dp~ 110 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHAT-YGHFLLNPCRLKNYDVIIMDECHFTDPT 110 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHH-HHHHHHTSSCTTS-SEEEECTTT--SHH
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHH-HHHHhcCcccccCccEEEEeccccCCHH
Confidence 5789999999999999999999876432 22223333 3333332 124699999985 443333
Q ss_pred HHHH---HHHHhccCCCcEEEEecCC
Q 006057 75 GFKL---LELVGLEMDLPVIMLSGNG 97 (663)
Q Consensus 75 G~eL---Le~Ir~~~dIPVIILSA~~ 97 (663)
.+.+ ++.+.......+|+|||..
T Consensus 111 sIA~rg~l~~~~~~g~~~~i~mTATP 136 (148)
T PF07652_consen 111 SIAARGYLRELAESGEAKVIFMTATP 136 (148)
T ss_dssp HHHHHHHHHHHHHTTS-EEEEEESS-
T ss_pred HHhhheeHHHhhhccCeeEEEEeCCC
Confidence 3322 2333334457899999854
No 362
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=31.44 E-value=3.2e+02 Score=29.12 Aligned_cols=41 Identities=24% Similarity=0.413 Sum_probs=31.9
Q ss_pred CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 74 DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 74 DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
..+++++.++....+|||......+.+.+.++++.|..|++
T Consensus 268 ~~~~~~~~ir~~~~iPVi~~Ggi~t~~~a~~~l~~g~aD~V 308 (327)
T cd02803 268 YFLELAEKIKKAVKIPVIAVGGIRDPEVAEEILAEGKADLV 308 (327)
T ss_pred hhHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCCCee
Confidence 34567777877778999988887888999999999655543
No 363
>PRK05637 anthranilate synthase component II; Provisional
Probab=31.42 E-value=75 Score=32.41 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=45.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE--eCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS--DVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIl--Dv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
.||||||...-+...|...|++.|+.+..+..... ++.+.. ..||.||+ --.-|...+ +..+.++. ...+||+
T Consensus 2 ~~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l~~--~~~~~iIlsgGPg~~~d~~-~~~~li~~~~~~~PiL 77 (208)
T PRK05637 2 THVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEILA--ANPDLICLSPGPGHPRDAG-NMMALIDRTLGQIPLL 77 (208)
T ss_pred CEEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHHHh--cCCCEEEEeCCCCCHHHhh-HHHHHHHHHhCCCCEE
Confidence 37999999888888899999999988776654322 222322 25787776 112221111 12233322 2368887
Q ss_pred EEe
Q 006057 92 MLS 94 (663)
Q Consensus 92 ILS 94 (663)
-+.
T Consensus 78 GIC 80 (208)
T PRK05637 78 GIC 80 (208)
T ss_pred EEc
Confidence 664
No 364
>PRK10742 putative methyltransferase; Provisional
Probab=31.41 E-value=4.5e+02 Score=28.05 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=41.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC------CC----EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC------QY----HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMD 74 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~------gy----~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmD 74 (663)
|-+|..||.++.+...|+.-|++. +- ++. ...+..+.+.. ....||+|.+|=.-|.-.
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~---~~~~fDVVYlDPMfp~~~ 178 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD---ITPRPQVVYLDPMFPHKQ 178 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh---CCCCCcEEEECCCCCCCc
Confidence 568999999999999999999874 21 222 34555555543 234699999999887643
No 365
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=31.39 E-value=3.9e+02 Score=29.11 Aligned_cols=91 Identities=11% Similarity=0.036 Sum_probs=58.4
Q ss_pred EEEEEeCCHHHHHHHHHHHH----hCCC---EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006057 16 RVLAVDDDPTCLLLLETLLR----RCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~----~~gy---~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI 88 (663)
.|||=|.+-...-.+...++ ...+ ..+.+.+.++|.+.+.. .+|+|++|=.-|+ ++-+.+..-..-
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~a---gaDiImLDnmspe----~l~~av~~~~~~ 241 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAA---GADIIMLDNMSLE----QIEQAITLIAGR 241 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHc---CCCEEEECCCCHH----HHHHHHHHhcCc
Confidence 47777777655444444443 3342 23478899999999864 5899999964433 333333221223
Q ss_pred cEEEEecCCChHHHHHHHhcCCceE
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
.+|-.|+.-..+.+......|++..
T Consensus 242 ~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 242 SRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred eEEEEECCCCHHHHHHHHhcCCCEE
Confidence 4566788888888888888998764
No 366
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=31.39 E-value=1.4e+02 Score=29.37 Aligned_cols=45 Identities=9% Similarity=0.036 Sum_probs=27.5
Q ss_pred CHHHHHHHHhcc-CCCcEEEE--ecCCChHHHHHHHhcCCceEEeCCC
Q 006057 74 DGFKLLELVGLE-MDLPVIML--SGNGDPKLVMKGITHGACDYLLKPV 118 (663)
Q Consensus 74 DG~eLLe~Ir~~-~dIPVIIL--SA~~d~e~v~kAl~aGA~DYLlKPv 118 (663)
.|+++++.+++. +++||++. ........+..+.++||+..+.-..
T Consensus 39 ~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~~h~~ 86 (202)
T cd04726 39 EGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVTVLGA 86 (202)
T ss_pred hCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEEEEee
Confidence 457777777654 56777653 2222223456778888887766543
No 367
>CHL00101 trpG anthranilate synthase component 2
Probab=31.38 E-value=56 Score=32.47 Aligned_cols=49 Identities=14% Similarity=0.118 Sum_probs=34.1
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIl 66 (663)
+|||||....+-..|.+.|+..|..+..+......+..+.. ..||.||+
T Consensus 1 ~iliid~~dsft~~l~~~l~~~g~~~~v~~~~~~~~~~~~~--~~~dgiii 49 (190)
T CHL00101 1 MILIIDNYDSFTYNLVQSLGELNSDVLVCRNDEIDLSKIKN--LNIRHIII 49 (190)
T ss_pred CEEEEECCCchHHHHHHHHHhcCCCEEEEECCCCCHHHHhh--CCCCEEEE
Confidence 38999999888889999999999888776543212222222 25887775
No 368
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=31.34 E-value=1.5e+02 Score=32.56 Aligned_cols=65 Identities=17% Similarity=0.090 Sum_probs=43.7
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmDG-~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
+++.+++... ..+|+|.+|+-.+..+. .++++.|+.. +++|||+= .-...+.+..+.++||+..+
T Consensus 100 ~~~~~Lv~ag-~~~d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 100 DFVDQLAAEG-LTPEYITIDIAHGHSDSVINMIQHIKKHLPETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred HHHHHHHhcC-CCCCEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 4455555431 13599999998876443 4567777754 45776652 23367788999999999865
No 369
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=31.23 E-value=2.9e+02 Score=30.70 Aligned_cols=63 Identities=24% Similarity=0.200 Sum_probs=38.7
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 006057 15 LRVLAVDDDPT----CLLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (663)
Q Consensus 15 lRVLIVDDD~~----~r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~ 81 (663)
-|||||-|... ..+.+...|+..+..+..+. ..+++.+.+++. ++|+||- +.+..-++..+.
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~~~~--~~D~Iia---iGGGS~iD~AK~ 106 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLLKEN--NCDSVIS---LGGGSPHDCAKG 106 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHHc--CCCEEEE---eCCchHHHHHHH
Confidence 48888876532 34457777777676554432 345566666654 6888874 456666666654
Q ss_pred H
Q 006057 82 V 82 (663)
Q Consensus 82 I 82 (663)
+
T Consensus 107 i 107 (383)
T PRK09860 107 I 107 (383)
T ss_pred H
Confidence 4
No 370
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=31.22 E-value=1.8e+02 Score=27.67 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=39.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
.+.+|.++.... ..+.++..... +.++..+.+..++++++..+ ++|++|+|.
T Consensus 109 ~~~~i~~~~g~~-~~~~l~~~~~~-~~~~~~~~~~~~~~~~l~~g--~~d~~i~~~ 160 (225)
T PF00497_consen 109 KGKRIGVVRGSS-YADYLKQQYPS-NINIVEVDSPEEALEALLSG--RIDAFIVDE 160 (225)
T ss_dssp TTSEEEEETTSH-HHHHHHHHTHH-TSEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred cCcccccccchh-HHHHhhhhccc-hhhhcccccHHHHHHHHhcC--Ceeeeeccc
Confidence 467899888855 44455554433 67888899999999999865 799999975
No 371
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=31.08 E-value=2.8e+02 Score=31.79 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=64.4
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH----HHHH---HHHh
Q 006057 15 LRVLAVD----DDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG----FKLL---ELVG 83 (663)
Q Consensus 15 lRVLIVD----DD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG----~eLL---e~Ir 83 (663)
.+|.|+- -+..--+.|...|...||.++. .....|+||+...-..... ...+ +.++
T Consensus 24 ~~~~i~t~GC~~N~~dse~~~~~l~~~G~~~~~-------------~~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k 90 (467)
T PRK14329 24 KKLFIESYGCQMNFADSEIVASILQMAGYNTTE-------------NLEEADLVLVNTCSIRDNAEQKVRKRLEKFNALK 90 (467)
T ss_pred CEEEEEecCCCCcHHHHHHHHHHHHHCcCEECC-------------CcccCCEEEEeCcceechHHHHHHHHHHHHHHHH
Confidence 3566653 4555667888899989998764 1124799999886654332 2233 3333
Q ss_pred c-cCCCcEEEEecCCChHHHHHHHhc-CCceEEeCCCCHHHHHHHHHHHHH
Q 006057 84 L-EMDLPVIMLSGNGDPKLVMKGITH-GACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 84 ~-~~dIPVIILSA~~d~e~v~kAl~a-GA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
+ .++++||+...+... ...+.++. +..||+..+-..+.|...+..+..
T Consensus 91 ~~~p~~~ivvgGc~a~~-~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~~~ 140 (467)
T PRK14329 91 KKNPKLIVGVLGCMAER-LKDKLLEEEKIVDLVVGPDAYLDLPNLIAEVEE 140 (467)
T ss_pred hhCCCcEEEEECChhcC-cHHHHHhcCCCceEEECCCCHHHHHHHHHHHhc
Confidence 2 355555544433332 23334444 448999999999999888877643
No 372
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=31.00 E-value=2.3e+02 Score=32.55 Aligned_cols=85 Identities=15% Similarity=0.158 Sum_probs=54.2
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCc---e
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGAC---D 112 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MPd-------mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~---D 112 (663)
.|.+.+++.+.... .+|.|.+--..|. .-|++.++++....++||+.+-+- ..+.+.+++++|++ +
T Consensus 396 S~h~~~e~~~a~~~---gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~~~Pv~aiGGI-~~~~~~~~~~~G~~~~~g 471 (502)
T PLN02898 396 SCKTPEQAEQAWKD---GADYIGCGGVFPTNTKANNKTIGLDGLREVCEASKLPVVAIGGI-SASNAASVMESGAPNLKG 471 (502)
T ss_pred eCCCHHHHHHHhhc---CCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcCCCCEEEECCC-CHHHHHHHHHcCCCcCce
Confidence 56677776655443 5888875322222 227888887766678999988665 46778889999988 4
Q ss_pred E-----EeCCCCHHHHHHHHHHHH
Q 006057 113 Y-----LLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 113 Y-----LlKPvs~eeL~~~~q~Vl 131 (663)
+ |.+.-++.+....+...+
T Consensus 472 vav~~~i~~~~d~~~~~~~~~~~~ 495 (502)
T PLN02898 472 VAVVSALFDQEDVLKATRKLHAIL 495 (502)
T ss_pred EEEEeHHhcCCCHHHHHHHHHHHH
Confidence 3 334445555444444444
No 373
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=30.88 E-value=2.7e+02 Score=30.16 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=54.9
Q ss_pred EEEEEeC--CHH---HHHHHHHHHHhCCCEEEEECCHHHHH--HH-HHhcCCCceEEEEeCCCCCCCHHHHHHHHh--cc
Q 006057 16 RVLAVDD--DPT---CLLLLETLLRRCQYHVTTTSQAITAL--KL-LRENKNKFDLVISDVHMPDMDGFKLLELVG--LE 85 (663)
Q Consensus 16 RVLIVDD--D~~---~r~iL~~lL~~~gy~V~tasdg~EAL--el-Lre~k~~pDLVIlDv~MPdmDG~eLLe~Ir--~~ 85 (663)
+|++|=. .+. ....+.+.|++.|++|.......+.. .. .......+|+||+ -+.||- +++.++ ..
T Consensus 5 kv~lI~n~~~~~~~~~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~~~~~~~d~vi~----~GGDGT-~l~~~~~~~~ 79 (305)
T PRK02645 5 QVIIAYKAGSSQAKEAAERCAKQLEARGCKVLMGPSGPKDNPYPVFLASASELIDLAIV----LGGDGT-VLAAARHLAP 79 (305)
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHCCCEEEEecCchhhccccchhhccccCcCEEEE----ECCcHH-HHHHHHHhcc
Confidence 4766622 222 34455666777788877544322211 11 1111225788887 477883 344333 23
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC-HHHHHHHHHHHHHhh
Q 006057 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-IEELKNIWQHVVRRK 134 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs-~eeL~~~~q~Vlrr~ 134 (663)
.++||+.+.. .|-.+||.-... .++ ..+++.++++.
T Consensus 80 ~~~pv~gin~------------~G~lGFL~~~~~~~~~-~~~l~~i~~g~ 116 (305)
T PRK02645 80 HDIPILSVNV------------GGHLGFLTHPRDLLQD-ESVWDRLQEDR 116 (305)
T ss_pred CCCCEEEEec------------CCcceEecCchhhcch-HHHHHHHHcCC
Confidence 5789887764 256788885532 233 66777766543
No 374
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=30.87 E-value=6.7e+02 Score=28.09 Aligned_cols=66 Identities=21% Similarity=0.274 Sum_probs=44.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 46 QAITALKLLRENKNKFDLVISDVHM-------PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~M-------PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+..+-.+.+.+. .+|+|.++... +..+...+.+.++. .++|||. ..-...+.+.+++++||+..+.
T Consensus 142 ~~~e~a~~l~ea--Gvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~-~~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 142 RAQELAPTVVEA--GVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYE-LDVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred CHHHHHHHHHHC--CCCEEEEeccchhhhccCCcCCHHHHHHHHHH-CCCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 455555666543 68999997532 22255556565554 5789876 4455677888899999998755
No 375
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=30.85 E-value=2.5e+02 Score=28.67 Aligned_cols=56 Identities=20% Similarity=0.366 Sum_probs=40.3
Q ss_pred Cce-EEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc-CCceEEe
Q 006057 60 KFD-LVISDVHM---PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH-GACDYLL 115 (663)
Q Consensus 60 ~pD-LVIlDv~M---PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~a-GA~DYLl 115 (663)
.+| +++.++.- ..+-.+++++.++...++|||+.-.-.+.+.+.++++. ||+..++
T Consensus 162 G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 162 GAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 577 55545531 11223677888876678999988888889999999987 8887665
No 376
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=30.77 E-value=4.5e+02 Score=27.08 Aligned_cols=108 Identities=15% Similarity=0.097 Sum_probs=56.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.++++||.+-+. ...++..++..+. .|......++..+++. ..|++++--.. +.-|+.+++.+. ..+|||
T Consensus 223 ~~~l~ivG~g~~-~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~----~adi~v~ps~~-E~~~~~~lEAma--~G~PvI 294 (358)
T cd03812 223 NAKLLLVGDGEL-EEEIKKKVKELGLEDKVIFLGVRNDVPELLQ----AMDVFLFPSLY-EGLPLVLIEAQA--SGLPCI 294 (358)
T ss_pred CeEEEEEeCCch-HHHHHHHHHhcCCCCcEEEecccCCHHHHHH----hcCEEEecccc-cCCCHHHHHHHH--hCCCEE
Confidence 355666654432 2334444433332 2333332233333333 24666653322 334556666543 468988
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+ |..... ...+.. ...|+..+-+++++.+++..++...
T Consensus 295 ~-s~~~~~---~~~i~~-~~~~~~~~~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 295 L-SDTITK---EVDLTD-LVKFLSLDESPEIWAEEILKLKSED 332 (358)
T ss_pred E-EcCCch---hhhhcc-CccEEeCCCCHHHHHHHHHHHHhCc
Confidence 6 333332 223344 4578888888999999999988654
No 377
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=30.77 E-value=2.4e+02 Score=30.14 Aligned_cols=39 Identities=13% Similarity=0.086 Sum_probs=32.3
Q ss_pred HHHHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 76 FKLLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 76 ~eLLe~Ir~~~--dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
++.+.++++.. ++|||...+-.+.+.+.+++.+||+...
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~ 279 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQ 279 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChhe
Confidence 56666776554 8999999999999999999999998754
No 378
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=30.74 E-value=3.2e+02 Score=28.61 Aligned_cols=56 Identities=23% Similarity=0.280 Sum_probs=34.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-----CEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQ-----YHVT-TTSQAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~g-----y~V~-tasdg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
..+|.+||-++...+..++.+.... -.+. ...++.+.++ .....+|+||+|..-|.
T Consensus 96 ~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~---~~~~~yDvIi~D~~~~~ 157 (270)
T TIGR00417 96 VEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA---DTENTFDVIIVDSTDPV 157 (270)
T ss_pred cceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH---hCCCCccEEEEeCCCCC
Confidence 3478888988888888887775431 1222 2345554443 32347999999986543
No 379
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=30.74 E-value=4.2e+02 Score=26.93 Aligned_cols=79 Identities=16% Similarity=0.155 Sum_probs=52.8
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe------
Q 006057 46 QAITALKLLRENKNKFD-LVISDVHMP---DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL------ 115 (663)
Q Consensus 46 dg~EALelLre~k~~pD-LVIlDv~MP---dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl------ 115 (663)
+..+..+.+... .++ +++.|+.-. ..-.+++++.+.....+|||+..+-.+.+.+.+++..||+..++
T Consensus 150 ~~~~~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~ 227 (241)
T PRK13585 150 TPVEAAKRFEEL--GAGSILFTNVDVEGLLEGVNTEPVKELVDSVDIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK 227 (241)
T ss_pred CHHHHHHHHHHc--CCCEEEEEeecCCCCcCCCCHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence 445544544432 355 555566321 22346778888776789999988888888898999999998654
Q ss_pred CCCCHHHHHHH
Q 006057 116 KPVRIEELKNI 126 (663)
Q Consensus 116 KPvs~eeL~~~ 126 (663)
.|+..++++..
T Consensus 228 ~~~~~~~~~~~ 238 (241)
T PRK13585 228 GKFTLEEAIEA 238 (241)
T ss_pred CCcCHHHHHHH
Confidence 56666665544
No 380
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=30.70 E-value=1.4e+02 Score=32.79 Aligned_cols=63 Identities=25% Similarity=0.393 Sum_probs=46.5
Q ss_pred EEEEEeCCHHHHHHHHHHHHh--CCCE---EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 006057 16 RVLAVDDDPTCLLLLETLLRR--CQYH---VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~--~gy~---V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe 80 (663)
.|+++|-|..+.+.=+.++.. +||. |. ...||-.-++.+.++ .+|+||+|..-|.+.+.++.+
T Consensus 147 ~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~--~~dVii~dssdpvgpa~~lf~ 215 (337)
T KOG1562|consen 147 NILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKEN--PFDVIITDSSDPVGPACALFQ 215 (337)
T ss_pred ceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccC--CceEEEEecCCccchHHHHHH
Confidence 478888888777777777764 4563 33 445888877777644 799999999999999877654
No 381
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=30.64 E-value=3.6e+02 Score=29.29 Aligned_cols=95 Identities=13% Similarity=0.156 Sum_probs=59.4
Q ss_pred EEeCCHHHHHHHHHHHHhCCCEEEE------EC---CHHHHHHHHHhcCCCceEEEEeCCC-C----CCCHHHHHHHHhc
Q 006057 19 AVDDDPTCLLLLETLLRRCQYHVTT------TS---QAITALKLLRENKNKFDLVISDVHM-P----DMDGFKLLELVGL 84 (663)
Q Consensus 19 IVDDD~~~r~iL~~lL~~~gy~V~t------as---dg~EALelLre~k~~pDLVIlDv~M-P----dmDG~eLLe~Ir~ 84 (663)
++.|-....++++.+-...++.|.. .. +..+..+.+.+. ..|.|.+.-.. + +.-.+++++.+++
T Consensus 114 ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~~~~~~~~~~~a~~le~~--G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~ 191 (321)
T PRK10415 114 LLQYPDLVKSILTEVVNAVDVPVTLKIRTGWAPEHRNCVEIAQLAEDC--GIQALTIHGRTRACLFNGEAEYDSIRAVKQ 191 (321)
T ss_pred HhcCHHHHHHHHHHHHHhcCCceEEEEEccccCCcchHHHHHHHHHHh--CCCEEEEecCccccccCCCcChHHHHHHHH
Confidence 4455566677777776665554442 12 223333344432 46777654332 1 1123778888887
Q ss_pred cCCCcEEEEecCCChHHHHHHHh-cCCceEEe
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGIT-HGACDYLL 115 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~-aGA~DYLl 115 (663)
...+|||..-.-.+.+.+.++++ .||+...+
T Consensus 192 ~~~iPVI~nGgI~s~~da~~~l~~~gadgVmi 223 (321)
T PRK10415 192 KVSIPVIANGDITDPLKARAVLDYTGADALMI 223 (321)
T ss_pred hcCCcEEEeCCCCCHHHHHHHHhccCCCEEEE
Confidence 77899998888888889999997 58887643
No 382
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=30.64 E-value=3.9e+02 Score=26.76 Aligned_cols=91 Identities=11% Similarity=0.023 Sum_probs=53.3
Q ss_pred HHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCc
Q 006057 33 LLRRCQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGAC 111 (663)
Q Consensus 33 lL~~~g-y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~ 111 (663)
.|...+ .-|....+.+++++.++.-- +--+=++.+.+...+..++++.++.....-.+-...--..+.+..|++.||+
T Consensus 8 ~l~~~~~~~v~r~~~~~~~~~~~~~~~-~~Gv~~vqlr~k~~~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAd 86 (187)
T PRK07455 8 QLQQHRAIAVIRAPDLELGLQMAEAVA-AGGMRLIEITWNSDQPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQ 86 (187)
T ss_pred HHHhCCEEEEEEcCCHHHHHHHHHHHH-HCCCCEEEEeCCCCCHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCC
Confidence 334434 34666778888877665411 1124455667777788888887754332111101111123678889999998
Q ss_pred eEEeCCCCHHHHH
Q 006057 112 DYLLKPVRIEELK 124 (663)
Q Consensus 112 DYLlKPvs~eeL~ 124 (663)
..+.--++.+.+.
T Consensus 87 gv~~p~~~~~~~~ 99 (187)
T PRK07455 87 FCFTPHVDPELIE 99 (187)
T ss_pred EEECCCCCHHHHH
Confidence 8887777766554
No 383
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=30.50 E-value=1.2e+02 Score=21.91 Aligned_cols=41 Identities=20% Similarity=0.250 Sum_probs=31.3
Q ss_pred eeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHh
Q 006057 202 VVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASH 246 (663)
Q Consensus 202 v~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSH 246 (663)
-.||++-...|+.++.++|... =+.|.+.| ++-|..++..+
T Consensus 2 ~~Wt~~E~~~l~~~~~~~g~~~--w~~Ia~~~--~~rt~~~~~~~ 42 (49)
T smart00717 2 GEWTEEEDELLIELVKKYGKNN--WEKIAKEL--PGRTAEQCRER 42 (49)
T ss_pred CCCCHHHHHHHHHHHHHHCcCC--HHHHHHHc--CCCCHHHHHHH
Confidence 4699999999999999999421 25677776 47788888774
No 384
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.43 E-value=2.4e+02 Score=30.06 Aligned_cols=97 Identities=11% Similarity=0.203 Sum_probs=55.2
Q ss_pred HHhCCCEEEEE----CCH---HHHHHHHHhcCCCceEEEEeCCC---CCCC----HHHHHHHHhccCCCcEEEEecCC-C
Q 006057 34 LRRCQYHVTTT----SQA---ITALKLLRENKNKFDLVISDVHM---PDMD----GFKLLELVGLEMDLPVIMLSGNG-D 98 (663)
Q Consensus 34 L~~~gy~V~ta----sdg---~EALelLre~k~~pDLVIlDv~M---PdmD----G~eLLe~Ir~~~dIPVIILSA~~-d 98 (663)
+.+.+..|..- .+. ..|.+.++.. ...+++||..-. +.-. -+..+..+++...+||++=+.+. .
T Consensus 130 ~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~-Gn~~i~L~~rG~~t~~~Y~~~~vdl~~i~~lk~~~~~pV~~D~sHs~G 208 (266)
T PRK13398 130 VGKTKKPILLKRGMSATLEEWLYAAEYIMSE-GNENVVLCERGIRTFETYTRNTLDLAAVAVIKELSHLPIIVDPSHATG 208 (266)
T ss_pred HhcCCCcEEEeCCCCCCHHHHHHHHHHHHhc-CCCeEEEEECCCCCCCCCCHHHHHHHHHHHHHhccCCCEEEeCCCccc
Confidence 34556555422 133 3455666643 357899988633 2222 12233445555679988745443 2
Q ss_pred -----hHHHHHHHhcCCceEE-eCC-------------CCHHHHHHHHHHHH
Q 006057 99 -----PKLVMKGITHGACDYL-LKP-------------VRIEELKNIWQHVV 131 (663)
Q Consensus 99 -----~e~v~kAl~aGA~DYL-lKP-------------vs~eeL~~~~q~Vl 131 (663)
......|+.+||++.+ -|- +++++|+..++.+.
T Consensus 209 ~~~~v~~~~~aAva~Ga~Gl~iE~H~~pd~a~~D~~~sl~p~~l~~l~~~i~ 260 (266)
T PRK13398 209 RRELVIPMAKAAIAAGADGLMIEVHPEPEKALSDARQTLNFEEMKELVDELK 260 (266)
T ss_pred chhhHHHHHHHHHHcCCCEEEEeccCCccccCCchhhcCCHHHHHHHHHHHH
Confidence 4567788999998644 332 45667776666543
No 385
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=30.35 E-value=2.5e+02 Score=30.51 Aligned_cols=76 Identities=18% Similarity=0.217 Sum_probs=46.1
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEE--E------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006057 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTT--T------SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 14 glRVLIVDDD~~---~r~iL~~lL~~~gy~V~t--a------sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
+-|+|||-|... ..+.+...|+..+..+.. + .+..++.+.+++. ++|+||- +.+..-+++.+.+
T Consensus 22 ~~r~livt~~~~~~~~~~~v~~~L~~~~i~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGS~iD~aK~i 96 (351)
T cd08170 22 GKRALIIADEFVLDLVGAKIEESLAAAGIDARFEVFGGECTRAEIERLAEIARDN--GADVVIG---IGGGKTLDTAKAV 96 (351)
T ss_pred CCeEEEEECHHHHHHHHHHHHHHHHhCCCeEEEEEeCCcCCHHHHHHHHHHHhhc--CCCEEEE---ecCchhhHHHHHH
Confidence 358888876544 333455556655544321 1 2344556666653 6888775 5677777777777
Q ss_pred hccCCCcEEEEe
Q 006057 83 GLEMDLPVIMLS 94 (663)
Q Consensus 83 r~~~dIPVIILS 94 (663)
.....+|+|.+.
T Consensus 97 a~~~~~P~iaIP 108 (351)
T cd08170 97 ADYLGAPVVIVP 108 (351)
T ss_pred HHHcCCCEEEeC
Confidence 555567877764
No 386
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=30.22 E-value=5.6e+02 Score=25.72 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=38.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 61 pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.|++|+-... +.-|..+++.+. ..+|||+ +.... ..+.+.. .+++.++-+.+++...+..++..
T Consensus 269 adi~v~ps~~-e~~~~~~~Ea~a--~g~PvI~-~~~~~---~~e~~~~--~g~~~~~~~~~~l~~~i~~l~~~ 332 (365)
T cd03807 269 LDVFVLSSLS-EGFPNVLLEAMA--CGLPVVA-TDVGD---NAELVGD--TGFLVPPGDPEALAEAIEALLAD 332 (365)
T ss_pred CCEEEeCCcc-ccCCcHHHHHHh--cCCCEEE-cCCCC---hHHHhhc--CCEEeCCCCHHHHHHHHHHHHhC
Confidence 4566653333 333455555543 4578876 33222 2233333 67899999999999999988754
No 387
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=30.21 E-value=2.9e+02 Score=27.83 Aligned_cols=86 Identities=21% Similarity=0.196 Sum_probs=47.5
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHHhCCCEEEEEC---CHHH----HHHHHHhcCCCceEEEEeCCCCCCCH--HHHHHH
Q 006057 14 GLRVLAVDDD---PTCLLLLETLLRRCQYHVTTTS---QAIT----ALKLLRENKNKFDLVISDVHMPDMDG--FKLLEL 81 (663)
Q Consensus 14 glRVLIVDDD---~~~r~iL~~lL~~~gy~V~tas---dg~E----ALelLre~k~~pDLVIlDv~MPdmDG--~eLLe~ 81 (663)
+.+|.+|--| .-..+.|+.+-+..+..+..+. +..+ +++.++. ..+|+||+|. |+..- -+++++
T Consensus 29 ~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~--~~~D~vlIDT--~Gr~~~d~~~~~e 104 (196)
T PF00448_consen 29 GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK--KGYDLVLIDT--AGRSPRDEELLEE 104 (196)
T ss_dssp T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH--TTSSEEEEEE---SSSSTHHHHHHH
T ss_pred cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh--cCCCEEEEec--CCcchhhHHHHHH
Confidence 4567666544 2456677888888888877655 2222 3333333 3689999998 44332 223333
Q ss_pred H----hc-cCCCcEEEEecCCChHHHH
Q 006057 82 V----GL-EMDLPVIMLSGNGDPKLVM 103 (663)
Q Consensus 82 I----r~-~~dIPVIILSA~~d~e~v~ 103 (663)
+ +. .+.-.++++++....+.+.
T Consensus 105 l~~~~~~~~~~~~~LVlsa~~~~~~~~ 131 (196)
T PF00448_consen 105 LKKLLEALNPDEVHLVLSATMGQEDLE 131 (196)
T ss_dssp HHHHHHHHSSSEEEEEEEGGGGGHHHH
T ss_pred HHHHhhhcCCccceEEEecccChHHHH
Confidence 3 22 2444567777766655433
No 388
>cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily. Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD).
Probab=30.17 E-value=2.5e+02 Score=30.38 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=23.2
Q ss_pred HHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE-eCCCC
Q 006057 79 LELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL-LKPVR 119 (663)
Q Consensus 79 Le~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL-lKPvs 119 (663)
++.++....+||++--...+...+.++++.|++|++ .||..
T Consensus 232 ~~~l~~~~~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 273 (357)
T cd03316 232 LARLRQATSVPIAAGENLYTRWEFRDLLEAGAVDIIQPDVTK 273 (357)
T ss_pred HHHHHHhCCCCEEeccccccHHHHHHHHHhCCCCEEecCccc
Confidence 334444445676654444456677777777766655 45543
No 389
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=30.17 E-value=2e+02 Score=31.20 Aligned_cols=79 Identities=18% Similarity=0.211 Sum_probs=50.0
Q ss_pred CcEEEEEeCCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCC-----CHHHHHHHHhcc
Q 006057 14 GLRVLAVDDDPTCL-LLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH--MPDM-----DGFKLLELVGLE 85 (663)
Q Consensus 14 glRVLIVDDD~~~r-~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~--MPdm-----DG~eLLe~Ir~~ 85 (663)
..+|.++|..|... ..+...|.+.|..|+...+..-+.-+ . ++|.||+-.+ +.+. -|--.+..+.+.
T Consensus 141 ~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m--~---~vd~VivGad~v~~nG~v~nkiGT~~lA~~Ak~ 215 (301)
T TIGR00511 141 DIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYFM--K---EVDHVVVGADAITANGALINKIGTSQLALAARE 215 (301)
T ss_pred cEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHHH--H---hCCEEEECccEEecCCCEEEHHhHHHHHHHHHH
Confidence 45788888777543 34566677778888877665444422 2 3788887443 4433 244455556667
Q ss_pred CCCcEEEEecCC
Q 006057 86 MDLPVIMLSGNG 97 (663)
Q Consensus 86 ~dIPVIILSA~~ 97 (663)
..+||++++...
T Consensus 216 ~~vPv~V~a~~~ 227 (301)
T TIGR00511 216 ARVPFMVAAETY 227 (301)
T ss_pred hCCCEEEEcccc
Confidence 789999887643
No 390
>PLN02335 anthranilate synthase
Probab=30.14 E-value=59 Score=33.41 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=43.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH-HHHHHHHHhcCCCceEEEEeC-CC-CCCCHHHHHHHHh-ccCCCcE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQA-ITALKLLRENKNKFDLVISDV-HM-PDMDGFKLLELVG-LEMDLPV 90 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg-~EALelLre~k~~pDLVIlDv-~M-PdmDG~eLLe~Ir-~~~dIPV 90 (663)
.+|||||....+-..|.+.|++.|+.+.++... .++ +.+.. ..||.||+-= -+ |...+ ..++.++ ....+||
T Consensus 19 ~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~-~~~~~--~~~d~iVisgGPg~p~d~~-~~~~~~~~~~~~~Pi 94 (222)
T PLN02335 19 GPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTV-EELKR--KNPRGVLISPGPGTPQDSG-ISLQTVLELGPLVPL 94 (222)
T ss_pred CcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCH-HHHHh--cCCCEEEEcCCCCChhhcc-chHHHHHHhCCCCCE
Confidence 489999976666677889999999887766532 122 22222 2577666521 11 22122 1234343 2346898
Q ss_pred EEEe
Q 006057 91 IMLS 94 (663)
Q Consensus 91 IILS 94 (663)
+-+.
T Consensus 95 LGIC 98 (222)
T PLN02335 95 FGVC 98 (222)
T ss_pred EEec
Confidence 7664
No 391
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=30.14 E-value=1.8e+02 Score=28.68 Aligned_cols=88 Identities=13% Similarity=0.120 Sum_probs=55.9
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHH---hccCCCcEEEEecCCCh
Q 006057 30 LETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPD-----MDGFKLLELV---GLEMDLPVIMLSGNGDP 99 (663)
Q Consensus 30 L~~lL~~~gy~V~t--asdg~EALelLre~k~~pDLVIlDv~MPd-----mDG~eLLe~I---r~~~dIPVIILSA~~d~ 99 (663)
+-..|+..|+.+.. +......++.+..- .||.|-+|..+.. .....+++.+ ....+++|| +++-.+.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l~~~--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~~ 213 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYLKRL--PVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLKVV-AEGVETE 213 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHHHhC--CCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCeEE-EEecCCH
Confidence 44456677888775 34556666677654 6999999965421 2234445433 233456665 5666777
Q ss_pred HHHHHHHhcCCce----EEeCCCCH
Q 006057 100 KLVMKGITHGACD----YLLKPVRI 120 (663)
Q Consensus 100 e~v~kAl~aGA~D----YLlKPvs~ 120 (663)
+....+...|++. |+.||...
T Consensus 214 ~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 214 EQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred HHHHHHHHcCCCeeeeceeccCCCC
Confidence 8888899999853 57777654
No 392
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=30.05 E-value=5.5e+02 Score=27.36 Aligned_cols=24 Identities=13% Similarity=0.104 Sum_probs=19.0
Q ss_pred CceEEeCCCCHHHHHHHHHHHHHh
Q 006057 110 ACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 110 A~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+..++.+..+.++|...+..++..
T Consensus 318 ~~~~~~~~~~~~~l~~~i~~ll~~ 341 (380)
T PRK00025 318 VPELLQEEATPEKLARALLPLLAD 341 (380)
T ss_pred chhhcCCCCCHHHHHHHHHHHhcC
Confidence 355777889999999999888753
No 393
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=29.92 E-value=5.6e+02 Score=26.51 Aligned_cols=68 Identities=21% Similarity=0.155 Sum_probs=52.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC-------CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMP-------DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MP-------dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
++.+.++|.+..+. .+|.|.+--..| ...|++.+++++....+|+|.|.+- +.+.+...+++||++.-
T Consensus 110 S~h~~eea~~A~~~---g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~iP~vAIGGi-~~~nv~~v~~~Ga~gVA 184 (211)
T COG0352 110 STHDLEEALEAEEL---GADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVNIPVVAIGGI-NLENVPEVLEAGADGVA 184 (211)
T ss_pred ecCCHHHHHHHHhc---CCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCCCCEEEEcCC-CHHHHHHHHHhCCCeEE
Confidence 56688888887754 389888765443 4568999998877777999998774 55778899999999863
No 394
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=29.63 E-value=2.4e+02 Score=31.56 Aligned_cols=84 Identities=24% Similarity=0.251 Sum_probs=56.3
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CC--HHHHHHHH---h---c------
Q 006057 28 LLLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPD-------MD--GFKLLELV---G---L------ 84 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~t--asdg~EALelLre~k~~pDLVIlDv~MPd-------mD--G~eLLe~I---r---~------ 84 (663)
..+.++++..+..|.. +.+.+.|.++++. ..|.|++... |+ .. |+..+..+ . +
T Consensus 177 ~~i~~~ik~~~ipVIaG~V~t~e~A~~l~~a---GAD~V~VG~G-~Gs~~~t~~~~g~g~p~~~ai~~~~~a~~~~l~~~ 252 (368)
T PRK08649 177 LNLKEFIYELDVPVIVGGCVTYTTALHLMRT---GAAGVLVGIG-PGAACTSRGVLGIGVPMATAIADVAAARRDYLDET 252 (368)
T ss_pred HHHHHHHHHCCCCEEEeCCCCHHHHHHHHHc---CCCEEEECCC-CCcCCCCcccCCCCcCHHHHHHHHHHHHHHhhhhh
Confidence 3356666666666653 6788888888863 5899987642 22 11 22222111 1 1
Q ss_pred -cCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 85 -EMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 85 -~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
...+|||.-.+-.....+.+|+.+||+...+
T Consensus 253 ~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~ 284 (368)
T PRK08649 253 GGRYVHVIADGGIGTSGDIAKAIACGADAVML 284 (368)
T ss_pred cCCCCeEEEeCCCCCHHHHHHHHHcCCCeecc
Confidence 0258999998999999999999999998765
No 395
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=29.59 E-value=2.2e+02 Score=30.93 Aligned_cols=80 Identities=15% Similarity=0.194 Sum_probs=51.2
Q ss_pred CcEEEEEeCCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCC-----CHHHHHHHHhcc
Q 006057 14 GLRVLAVDDDPTCL-LLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH--MPDM-----DGFKLLELVGLE 85 (663)
Q Consensus 14 glRVLIVDDD~~~r-~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~--MPdm-----DG~eLLe~Ir~~ 85 (663)
..+|.++|..|... ..+...|.+.|..|+...+..-+.-+ . ++|.||+-.+ +.++ -|--.+..+.+.
T Consensus 146 ~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m-~----~vd~VivGAd~v~~nG~v~nkiGT~~~A~~Ak~ 220 (310)
T PRK08535 146 DIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFM-K----DVDKVVVGADAITANGAVINKIGTSQIALAAHE 220 (310)
T ss_pred eEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHH-H----hCCEEEECccEEecCCCEEeHHhHHHHHHHHHH
Confidence 46788888877542 34566677778888877665554433 2 3788888544 4443 244455566667
Q ss_pred CCCcEEEEecCCC
Q 006057 86 MDLPVIMLSGNGD 98 (663)
Q Consensus 86 ~dIPVIILSA~~d 98 (663)
..+||++++....
T Consensus 221 ~~vPv~V~a~~~K 233 (310)
T PRK08535 221 ARVPFMVAAETYK 233 (310)
T ss_pred hCCCEEEecccce
Confidence 7899998876433
No 396
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=29.29 E-value=4.1e+02 Score=29.57 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=49.2
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MPd-------mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.+.+.+++...... .+|.|++--..|. .-|++.++.+.....+||+.+.+-. .+.+.+.+.+|++++-
T Consensus 246 S~Hs~~e~~~A~~~---GaDYI~lGPvf~T~tKp~~~~~Gle~l~~~~~~~~iPv~AiGGI~-~~ni~~l~~~Ga~gVA 320 (347)
T PRK02615 246 STTNPEEMAKAIAE---GADYIGVGPVFPTPTKPGKAPAGLEYLKYAAKEAPIPWFAIGGID-KSNIPEVLQAGAKRVA 320 (347)
T ss_pred ecCCHHHHHHHHHc---CCCEEEECCCcCCCCCCCCCCCCHHHHHHHHHhCCCCEEEECCCC-HHHHHHHHHcCCcEEE
Confidence 56677777776653 5798887443332 3478888887766789999987654 6778888999998863
No 397
>PLN00191 enolase
Probab=29.24 E-value=4.2e+02 Score=30.58 Aligned_cols=109 Identities=19% Similarity=0.270 Sum_probs=68.4
Q ss_pred EeCCHHHHHHHHHHHHhCCCE--E-----------------E------------EECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 20 VDDDPTCLLLLETLLRRCQYH--V-----------------T------------TTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 20 VDDD~~~r~iL~~lL~~~gy~--V-----------------~------------tasdg~EALelLre~k~~pDLVIlDv 68 (663)
++++...++.|.+.++.+||+ | + ..-+.++++++++....+++++.+.=
T Consensus 239 ~~~~~eal~ll~eAi~~ag~~~~i~i~lD~Aase~~~~~~~Y~~~~~~~~~~~~~~~s~~e~i~~~~~L~~~y~I~~IED 318 (457)
T PLN00191 239 IQDNKEGLELLKEAIEKAGYTGKIKIGMDVAASEFYTKDKKYDLDFKEENNDGSNKKSGDELIDLYKEFVSDYPIVSIED 318 (457)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCceEEEeehhhhhhcccCCceEeeccccCCCcccccCHHHHHHHHHHHhhcCCcEEEEC
Confidence 567777888888888877663 1 1 01277888888877445577877654
Q ss_pred CCCCCCHHHHHHHHhccCCCcEEEEec-CCChHHHHHHHhcCCc-eEEeCCCCHHHHHHHHHH
Q 006057 69 HMPDMDGFKLLELVGLEMDLPVIMLSG-NGDPKLVMKGITHGAC-DYLLKPVRIEELKNIWQH 129 (663)
Q Consensus 69 ~MPdmDG~eLLe~Ir~~~dIPVIILSA-~~d~e~v~kAl~aGA~-DYLlKPvs~eeL~~~~q~ 129 (663)
-++. +.++-+++++....+||+.=-. ......+.++++.+++ .+++|+-..--|...++.
T Consensus 319 Pl~~-~D~eg~~~Lt~~~~ipIvgDE~~vtn~~~l~~~I~~~aad~i~iKl~qiGGITea~~~ 380 (457)
T PLN00191 319 PFDQ-DDWEHWAKLTSLEDVQIVGDDLLVTNPKRVAKAIQEKACNALLLKVNQIGTVTESIEA 380 (457)
T ss_pred CCCc-ccHHHHHHHHccCCCcEEccCcccCCHHHHHHHHHhCCCCEEEecccccCCHHHHHHH
Confidence 4443 3355555566556667543111 1346778888888865 567888766555555543
No 398
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=29.18 E-value=5.2e+02 Score=27.36 Aligned_cols=108 Identities=18% Similarity=0.198 Sum_probs=58.9
Q ss_pred CcEEEEEeCCH-------HHHHHHHHHHHh-CCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 006057 14 GLRVLAVDDDP-------TCLLLLETLLRR-CQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (663)
Q Consensus 14 glRVLIVDDD~-------~~r~iL~~lL~~-~gy--~V~tas--dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~ 81 (663)
.++++++.+.+ .....++.+++. .+. .|.... ..++...++. ..|++++--.. +.-|+.+++.
T Consensus 245 ~~~l~i~G~~~~~~~~~~~~~~~l~~~~~~~~~l~~~V~f~g~~~~~~~~~~l~----~ad~~l~~s~~-E~~g~~~lEA 319 (392)
T cd03805 245 NVRLVIAGGYDPRVAENVEYLEELQRLAEELLLLEDQVIFLPSISDSQKELLLS----SARALLYTPSN-EHFGIVPLEA 319 (392)
T ss_pred CeEEEEEcCCCCCCchhHHHHHHHHHHHHHhcCCCceEEEeCCCChHHHHHHHh----hCeEEEECCCc-CCCCchHHHH
Confidence 45666665422 223445555554 332 344332 2233334443 35777763222 2234555554
Q ss_pred HhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 82 VGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 82 Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+ ...+|||..-. .. ..+.+..|.++|+..| +.+++.+.+..++..
T Consensus 320 m--a~G~PvI~s~~-~~---~~e~i~~~~~g~~~~~-~~~~~a~~i~~l~~~ 364 (392)
T cd03805 320 M--YAGKPVIACNS-GG---PLETVVDGETGFLCEP-TPEEFAEAMLKLAND 364 (392)
T ss_pred H--HcCCCEEEECC-CC---cHHHhccCCceEEeCC-CHHHHHHHHHHHHhC
Confidence 4 34689886432 22 2344556778899877 999999999888753
No 399
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=29.08 E-value=1.4e+02 Score=30.92 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=10.1
Q ss_pred CcEEEEEeCCHH
Q 006057 14 GLRVLAVDDDPT 25 (663)
Q Consensus 14 glRVLIVDDD~~ 25 (663)
|.+|+|||-|+.
T Consensus 30 G~~VlliD~DpQ 41 (231)
T PRK13849 30 GKRVALFEADEN 41 (231)
T ss_pred CCcEEEEeCCCC
Confidence 679999998874
No 400
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=28.98 E-value=1.6e+02 Score=31.32 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=23.8
Q ss_pred cEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 15 LRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 15 lRVLIVDDD~~---~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
.+|.+|+-|+. ..+.|..+-+..+..+..+.+..+..+.+... ..+|+||+|.
T Consensus 225 ~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~~~d~vliDt 280 (282)
T TIGR03499 225 KKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-RDKDLILIDT 280 (282)
T ss_pred CeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-cCCCEEEEeC
Confidence 45666665542 12223333333344444444444444444432 2356666664
No 401
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=28.95 E-value=3.1e+02 Score=30.02 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=37.3
Q ss_pred cEEEEEeCCHHHH----HHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 006057 15 LRVLAVDDDPTCL----LLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (663)
Q Consensus 15 lRVLIVDDD~~~r----~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~ 81 (663)
-|||||-|..... ..+...|+..++.+..+. ...++++.+++. .+|+||- +.+..-+++.+.
T Consensus 24 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~Iia---iGGGs~~D~AK~ 98 (370)
T cd08551 24 RKALIVTDPGLVKTGVLDKVIDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREE--GCDGVIA---VGGGSVLDTAKA 98 (370)
T ss_pred CeEEEEeCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCchHHHHHHH
Confidence 4888887654432 457777777666554432 234455555543 6888774 455566666654
Q ss_pred H
Q 006057 82 V 82 (663)
Q Consensus 82 I 82 (663)
+
T Consensus 99 v 99 (370)
T cd08551 99 I 99 (370)
T ss_pred H
Confidence 4
No 402
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=28.82 E-value=1.1e+02 Score=34.76 Aligned_cols=64 Identities=31% Similarity=0.440 Sum_probs=47.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHH--HHHHhCC------CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLE--TLLRRCQ------YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~--~lL~~~g------y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG 75 (663)
.+|.-..|-+||=||...+.-+ ..|+..+ -+|..+. ++|...++..++.+|.||+|+--|....
T Consensus 309 kyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~--dDAf~wlr~a~~~fD~vIVDl~DP~tps 380 (508)
T COG4262 309 KYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVN--DDAFQWLRTAADMFDVVIVDLPDPSTPS 380 (508)
T ss_pred hCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEe--ccHHHHHHhhcccccEEEEeCCCCCCcc
Confidence 4676778999999998888777 5565542 2455543 4677888877778999999997776554
No 403
>PRK00536 speE spermidine synthase; Provisional
Probab=28.75 E-value=1.5e+02 Score=31.59 Aligned_cols=21 Identities=24% Similarity=0.615 Sum_probs=12.6
Q ss_pred eeehhhhHHHHHHHHHhcCCCcchHHHHhhc
Q 006057 203 VWSVELHRKFVAAVNQLGIDKAVPKKILDLM 233 (663)
Q Consensus 203 ~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m 233 (663)
-|++++|+.-. ++|+.|.+.+
T Consensus 236 yy~~~~h~a~F----------~lP~~v~~~l 256 (262)
T PRK00536 236 YYNEDIHRAAF----------ALPKNLQEVF 256 (262)
T ss_pred eeCHHHHHHHh----------cCcHHHHHHH
Confidence 46888886542 3466665543
No 404
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=28.73 E-value=3.6e+02 Score=29.01 Aligned_cols=92 Identities=10% Similarity=-0.055 Sum_probs=56.3
Q ss_pred EEEEEeCCHHHHHHHHHHH----HhCC--CE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006057 16 RVLAVDDDPTCLLLLETLL----RRCQ--YH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL----~~~g--y~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI 88 (663)
.|||=|.+-...-.+...+ +..+ .. -+++.+.++|.+.+.. .+|.|.+|- -|.+.++++......
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~~~---gaDyI~lD~-----~~~e~l~~~~~~~~~ 231 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAVAA---GADIIMFDN-----RTPDEIREFVKLVPS 231 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECC-----CCHHHHHHHHHhcCC
Confidence 4777777755443344433 3334 22 3578899999888753 589999973 344555544332222
Q ss_pred cE-EEEecCCChHHHHHHHhcCCceEEe
Q 006057 89 PV-IMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 89 PV-IILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
|+ |..++--..+.+....+.|++.+-+
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 33 2344556777888899999987643
No 405
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=28.72 E-value=2.2e+02 Score=32.72 Aligned_cols=64 Identities=14% Similarity=0.089 Sum_probs=44.2
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.++.+.+.+. .+|+|++|..-.. ..-++.+++++.. +++|||+ ..-...+.+..++++||+...
T Consensus 230 ~e~a~~L~~a--gvdvivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 230 EERAEALVEA--GVDVLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HHHHHHHHHh--CCCEEEEECCCCcchhHHHHHHHHHhhCCCCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 4555555443 5899999975333 3345667777765 4888886 555667889999999998774
No 406
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=28.61 E-value=2.9e+02 Score=30.93 Aligned_cols=100 Identities=20% Similarity=0.214 Sum_probs=0.0
Q ss_pred CCcEEEEEe---------CCHHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEE------------EEeCC
Q 006057 13 SGLRVLAVD---------DDPTCLLLLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLV------------ISDVH 69 (663)
Q Consensus 13 ~glRVLIVD---------DD~~~r~iL~~lL~~~gy~V~t--asdg~EALelLre~k~~pDLV------------IlDv~ 69 (663)
.|..+++|. .-...-..|.++++..+..|.. +.+.++|+++++.. +|.| .+.+.
T Consensus 154 AGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~G~V~t~e~A~~~~~aG---aDgV~~G~gg~~~~~~~lg~~ 230 (369)
T TIGR01304 154 AGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIAGGVNDYTTALHLMRTG---AAGVIVGPGGANTTRLVLGIE 230 (369)
T ss_pred CCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHcC---CCEEEECCCCCcccccccCCC
Q ss_pred CCCCCHHHHHHHHhcc-------CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 70 MPDMDGFKLLELVGLE-------MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 70 MPdmDG~eLLe~Ir~~-------~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.|...-+.-+...+.. ..+|||.-.+-.....+.+|+.+||+...+
T Consensus 231 ~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~i 283 (369)
T TIGR01304 231 VPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVL 283 (369)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeee
No 407
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=28.57 E-value=4.2e+02 Score=30.04 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHhcCCCcch
Q 006057 207 ELHRKFVAAVNQLGIDKAVP 226 (663)
Q Consensus 207 eLh~kFv~av~~LG~dkA~p 226 (663)
.-|-.|+.++..||+-+-.|
T Consensus 242 ~g~~~~i~~L~~lGll~~~~ 261 (389)
T COG1748 242 PGHLEVIKALRDLGLLSREP 261 (389)
T ss_pred ccHHHHHHHHHHcCCCcccc
Confidence 57889999999999755543
No 408
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=28.56 E-value=1.5e+02 Score=37.23 Aligned_cols=73 Identities=18% Similarity=0.358 Sum_probs=49.8
Q ss_pred CceEEEEe-CCCCCCCHHHHH-HHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 60 KFDLVISD-VHMPDMDGFKLL-ELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 60 ~pDLVIlD-v~MPdmDG~eLL-e~Ir~~~-dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++-|+|+| ++|-..+.+..+ +.|.+-+ .+.+|+.| .+...+...+..-+.-|-.||++.+++...+++++...
T Consensus 119 k~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaT--Te~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~E 194 (944)
T PRK14949 119 RFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLAT--TDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQE 194 (944)
T ss_pred CcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEEC--CCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHc
Confidence 56788887 777665666544 4554333 34555544 34445556666667889999999999999999988653
No 409
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=28.48 E-value=1.6e+02 Score=31.73 Aligned_cols=56 Identities=27% Similarity=0.373 Sum_probs=38.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQ---Y--HVTTTSQAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~g---y--~V~tasdg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
-+|.+||=|+.+.+.-++.|.... + +|... ..++.+.+++....+|+||+|..-|.
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~--i~Dg~~~v~~~~~~fDvIi~D~tdp~ 161 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEII--IDDGVEFLRDCEEKFDVIIVDSTDPV 161 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEE--eccHHHHHHhCCCcCCEEEEcCCCCC
Confidence 478889989888888888886542 1 23221 23455566655557999999998884
No 410
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=28.48 E-value=4e+02 Score=29.50 Aligned_cols=88 Identities=7% Similarity=0.072 Sum_probs=52.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH--HHHHHHhccCCCc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGF--KLLELVGLEMDLP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy-~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~--eLLe~Ir~~~dIP 89 (663)
+.+|+.||-++...+..++-++..+. .+. .+.+..+.+... ...+|+||+| |.-.|+ ++++.+.....-.
T Consensus 255 ~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~---~~~~D~vi~D---PPr~G~~~~~l~~l~~~~p~~ 328 (374)
T TIGR02085 255 DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ---MSAPELVLVN---PPRRGIGKELCDYLSQMAPKF 328 (374)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc---CCCCCEEEEC---CCCCCCcHHHHHHHHhcCCCe
Confidence 45899999999888888888777664 333 455665554321 1259999998 444453 5556554322223
Q ss_pred EEEEecCCChHHHHHHHhc
Q 006057 90 VIMLSGNGDPKLVMKGITH 108 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~a 108 (663)
||.++ ......++.+...
T Consensus 329 ivyvs-c~p~TlaRDl~~L 346 (374)
T TIGR02085 329 ILYSS-CNAQTMAKDIAEL 346 (374)
T ss_pred EEEEE-eCHHHHHHHHHHh
Confidence 45444 4444455554444
No 411
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.37 E-value=2e+02 Score=31.35 Aligned_cols=76 Identities=11% Similarity=0.160 Sum_probs=43.2
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 006057 14 GLRVLAVDDDPTC---LLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (663)
Q Consensus 14 glRVLIVDDD~~~---r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~ 81 (663)
+-|||||-|.... .+.+...|+..+..+..+. ...++.+..++ .++|+||- +.+..-+++.+.
T Consensus 22 ~~r~liv~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~--~~~d~iia---vGGGs~~D~aK~ 96 (345)
T cd08171 22 GKKVVVIGGKTALAAAKDKIKAALEQSGIEITDFIWYGGESTYENVERLKKNPAV--QEADMIFA---VGGGKAIDTVKV 96 (345)
T ss_pred CCEEEEEeCHHHHHHHHHHHHHHHHHCCCeEEEEEecCCCCCHHHHHHHHHHHhh--cCCCEEEE---eCCcHHHHHHHH
Confidence 3688888776432 3445666666565443221 22344444443 36787774 456666777776
Q ss_pred HhccCCCcEEEEe
Q 006057 82 VGLEMDLPVIMLS 94 (663)
Q Consensus 82 Ir~~~dIPVIILS 94 (663)
+.....+|+|.+-
T Consensus 97 ia~~~~~p~i~VP 109 (345)
T cd08171 97 LADKLGKPVFTFP 109 (345)
T ss_pred HHHHcCCCEEEec
Confidence 6544466776664
No 412
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=28.37 E-value=5.8e+02 Score=28.53 Aligned_cols=79 Identities=13% Similarity=0.032 Sum_probs=47.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHhccCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGLEMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy-~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmD-G~eLLe~Ir~~~dIPVI 91 (663)
-+|+.||-++...+..++-++..+. .+. ...+..+.+..+......+|+||+|- |... ..++++.+.....-.||
T Consensus 315 ~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP--Pr~G~~~~~l~~l~~l~~~~iv 392 (431)
T TIGR00479 315 KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLDP--PRKGCAAEVLRTIIELKPERIV 392 (431)
T ss_pred CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEECc--CCCCCCHHHHHHHHhcCCCEEE
Confidence 4799999999888888877776554 233 45677665543322123589999875 3321 25666655432222455
Q ss_pred EEec
Q 006057 92 MLSG 95 (663)
Q Consensus 92 ILSA 95 (663)
.++.
T Consensus 393 yvsc 396 (431)
T TIGR00479 393 YVSC 396 (431)
T ss_pred EEcC
Confidence 5554
No 413
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=28.35 E-value=5.2e+02 Score=26.96 Aligned_cols=99 Identities=15% Similarity=0.186 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHH---hccCCCcEEEEecC
Q 006057 27 LLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELV---GLEMDLPVIMLSGN 96 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~I---r~~~dIPVIILSA~ 96 (663)
...+-..|+..|+.+. -+..+-..+..+.+- .||+|=+|-.+- +.....+++.| .+..++.||+ -+-
T Consensus 138 ~~~~l~~L~~~G~~ialDDFGtG~ssl~~L~~l--~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vva-EGV 214 (256)
T COG2200 138 ALALLRQLRELGVRIALDDFGTGYSSLSYLKRL--PPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVA-EGV 214 (256)
T ss_pred HHHHHHHHHHCCCeEEEECCCCCHHHHHHHhhC--CCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEE-eec
Confidence 3344556667787654 678888889988864 799998887542 22333455533 2344566664 333
Q ss_pred CChHHHHHHHhcCCc----eEEeCCCCHHHHHHHHH
Q 006057 97 GDPKLVMKGITHGAC----DYLLKPVRIEELKNIWQ 128 (663)
Q Consensus 97 ~d~e~v~kAl~aGA~----DYLlKPvs~eeL~~~~q 128 (663)
...+....+.+.|++ +|+.||...+++...+.
T Consensus 215 Et~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~~ 250 (256)
T COG2200 215 ETEEQLDLLRELGCDYLQGYLFSRPLPADALDALLS 250 (256)
T ss_pred CCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHHh
Confidence 455667777788887 46889999977766554
No 414
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=28.34 E-value=5.3e+02 Score=27.94 Aligned_cols=100 Identities=21% Similarity=0.262 Sum_probs=59.8
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHH---HHH-------H--HHhcCCCceEEEEeCCCCCCCHHHH
Q 006057 16 RVLAVD--DDPTC---LLLLETLLRRCQYHVTTTSQAIT---ALK-------L--LRENKNKFDLVISDVHMPDMDGFKL 78 (663)
Q Consensus 16 RVLIVD--DD~~~---r~iL~~lL~~~gy~V~tasdg~E---ALe-------l--Lre~k~~pDLVIlDv~MPdmDG~eL 78 (663)
+|+|+- +.+.. ...|...|.+.|+.|........ ++. . ..+....+|+||+ -+.||- +
T Consensus 7 ~i~ii~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~----lGGDGT-~ 81 (296)
T PRK04539 7 NIGIVTRPNTPDIQDTAHTLITFLKQHGFTVYLDEVGIKEGCIYTQDTVGCHIVNKTELGQYCDLVAV----LGGDGT-F 81 (296)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecccccccchhccccccccccchhhcCcCCCEEEE----ECCcHH-H
Confidence 588873 33433 34455566677888775432111 110 0 0111124788877 578884 4
Q ss_pred HHHHhc--cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 79 LELVGL--EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 79 Le~Ir~--~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|+..+. ..++||+-+- .|-.+||.- ++++++...++.++++.
T Consensus 82 L~aa~~~~~~~~PilGIN-------------~G~lGFL~~-~~~~~~~~~l~~i~~g~ 125 (296)
T PRK04539 82 LSVAREIAPRAVPIIGIN-------------QGHLGFLTQ-IPREYMTDKLLPVLEGK 125 (296)
T ss_pred HHHHHHhcccCCCEEEEe-------------cCCCeEeec-cCHHHHHHHHHHHHcCC
Confidence 443332 3478988765 466889985 89999999999988654
No 415
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=28.32 E-value=1.9e+02 Score=33.71 Aligned_cols=67 Identities=16% Similarity=0.131 Sum_probs=43.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+..+-.+.|-+. ..|+|.+|.--.. ..-++++++|+.. ++++||+ ..-...+.+..++++||+...+
T Consensus 248 ~~~~r~~~l~~a--g~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 248 SDKERLEHLVKA--GVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred cHHHHHHHHHHc--CCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 444444444432 6999999994211 1123678888764 5677664 3345677889999999998754
No 416
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=28.06 E-value=4.6e+02 Score=27.94 Aligned_cols=71 Identities=15% Similarity=0.243 Sum_probs=41.6
Q ss_pred HHHHHHHHHhcCCCceEEEEe-C----CCCCCCHH--HHHHHHhccCCCcEEE-EecCCCh------HHHHHHHhcCCce
Q 006057 47 AITALKLLRENKNKFDLVISD-V----HMPDMDGF--KLLELVGLEMDLPVIM-LSGNGDP------KLVMKGITHGACD 112 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlD-v----~MPdmDG~--eLLe~Ir~~~dIPVII-LSA~~d~------e~v~kAl~aGA~D 112 (663)
...|++.+.+. ...+|+||. . ..+..+-+ ..+..+++..++|||+ .| |..- .....|+..||++
T Consensus 138 ~~~A~e~i~~~-Gn~~i~L~eRg~~~Y~~~~~n~~dl~ai~~lk~~~~lPVivd~S-Hs~G~r~~v~~~a~AAvA~GAdG 215 (250)
T PRK13397 138 YLGALSYLQDT-GKSNIILCERGVRGYDVETRNMLDIMAVPIIQQKTDLPIIVDVS-HSTGRRDLLLPAAKIAKAVGANG 215 (250)
T ss_pred HHHHHHHHHHc-CCCeEEEEccccCCCCCccccccCHHHHHHHHHHhCCCeEECCC-CCCcccchHHHHHHHHHHhCCCE
Confidence 35577777754 357899997 2 12211111 2233444546799998 55 5332 5677889999986
Q ss_pred EE-eCCCC
Q 006057 113 YL-LKPVR 119 (663)
Q Consensus 113 YL-lKPvs 119 (663)
.+ -|-++
T Consensus 216 l~IE~H~~ 223 (250)
T PRK13397 216 IMMEVHPD 223 (250)
T ss_pred EEEEecCC
Confidence 54 44333
No 417
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=27.98 E-value=98 Score=34.11 Aligned_cols=64 Identities=20% Similarity=0.328 Sum_probs=48.4
Q ss_pred CHHHHHHHHH-hcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCce
Q 006057 46 QAITALKLLR-ENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD 112 (663)
Q Consensus 46 dg~EALelLr-e~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~D 112 (663)
+..||++.+. ...+.-|+|++- |.+--+++++.++...++||.+.--.++...+..|.+.|..|
T Consensus 226 n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 226 NRREALREVALDIEEGADMVMVK---PALPYLDIIRRVKDEFNLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred CHHHHHHHHHhhHHhCCCEEEEc---CCchHHHHHHHHHhcCCCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 5667766443 333468999874 777778899999888899999988777777777888888654
No 418
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=27.95 E-value=3.5e+02 Score=29.36 Aligned_cols=39 Identities=23% Similarity=0.316 Sum_probs=32.5
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.++++.+++..++|||..-...+.+.+.++++.|.+|++
T Consensus 279 ~~~~~~ir~~~~iPVi~~G~i~t~~~a~~~l~~g~aD~V 317 (336)
T cd02932 279 VPFAERIRQEAGIPVIAVGLITDPEQAEAILESGRADLV 317 (336)
T ss_pred HHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHcCCCCee
Confidence 467777877778999988887888999999999987765
No 419
>PRK04457 spermidine synthase; Provisional
Probab=27.93 E-value=6.1e+02 Score=26.62 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=37.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC--CEEE-EECCHHHHHHHHHhcCCCceEEEEeCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQ--YHVT-TTSQAITALKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~g--y~V~-tasdg~EALelLre~k~~pDLVIlDv~ 69 (663)
+.+|.+||=|+...+..++.+...+ -.+. ...|+.+.+... ...+|+|++|..
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---~~~yD~I~~D~~ 145 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---RHSTDVILVDGF 145 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---CCCCCEEEEeCC
Confidence 5789999999999988888775432 2343 446766665432 347999999973
No 420
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=27.87 E-value=6e+02 Score=28.02 Aligned_cols=77 Identities=19% Similarity=0.182 Sum_probs=50.9
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-EE-EEECCHHHHHHHHHhc------------CCCceEEEEeCCCCCCCH--HHHH
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQY-HV-TTTSQAITALKLLREN------------KNKFDLVISDVHMPDMDG--FKLL 79 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy-~V-~tasdg~EALelLre~------------k~~pDLVIlDv~MPdmDG--~eLL 79 (663)
+|..||-++...+.+++-+...+. .+ ..+.++.+.+..+... ...||+||+|= | -.| -+++
T Consensus 230 ~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDP--P-R~G~~~~~l 306 (362)
T PRK05031 230 RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDP--P-RAGLDDETL 306 (362)
T ss_pred EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECC--C-CCCCcHHHH
Confidence 799999999888888877766665 34 3667887777654321 12489999984 3 455 3566
Q ss_pred HHHhccCCCcEEEEecCC
Q 006057 80 ELVGLEMDLPVIMLSGNG 97 (663)
Q Consensus 80 e~Ir~~~dIPVIILSA~~ 97 (663)
+.|.. + -.||.++...
T Consensus 307 ~~l~~-~-~~ivyvSC~p 322 (362)
T PRK05031 307 KLVQA-Y-ERILYISCNP 322 (362)
T ss_pred HHHHc-c-CCEEEEEeCH
Confidence 76754 2 3466666544
No 421
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=27.84 E-value=4.4e+02 Score=28.71 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=40.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCE-----EEEECCHHHHHHHHHhcCCCceEEEEe
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYH-----VTTTSQAITALKLLRENKNKFDLVISD 67 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy~-----V~tasdg~EALelLre~k~~pDLVIlD 67 (663)
|...=|||-+|-|+..++.--..-++.+.. |..-..++...+++.+. +|||+++-
T Consensus 101 f~~PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--~PDIlViT 160 (283)
T TIGR02855 101 FGMPGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLIEEV--RPDILVIT 160 (283)
T ss_pred CCCCCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHHHHh--CCCEEEEe
Confidence 533348999999999888777777776543 44455677777888765 79998873
No 422
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=27.80 E-value=2.6e+02 Score=27.50 Aligned_cols=89 Identities=15% Similarity=0.186 Sum_probs=55.7
Q ss_pred HHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCC-----CCHHHHHHHH---hccCCCcEEEEecCCC
Q 006057 29 LLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPD-----MDGFKLLELV---GLEMDLPVIMLSGNGD 98 (663)
Q Consensus 29 iL~~lL~~~gy~V~t--asdg~EALelLre~k~~pDLVIlDv~MPd-----mDG~eLLe~I---r~~~dIPVIILSA~~d 98 (663)
..-..|+..|+.+.. +..+...+..+..- .||.|-+|..+-. .....+++.+ ....+++|| .++-.+
T Consensus 137 ~~i~~l~~~G~~ialddfg~~~~~~~~l~~l--~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vi-a~gVe~ 213 (241)
T smart00052 137 ATLQRLRELGVRIALDDFGTGYSSLSYLKRL--PVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQVV-AEGVET 213 (241)
T ss_pred HHHHHHHHCCCEEEEeCCCCcHHHHHHHHhC--CCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCeEE-EecCCC
Confidence 344556777988764 34455566677653 6999999975421 1133444433 234456655 566677
Q ss_pred hHHHHHHHhcCCce----EEeCCCCH
Q 006057 99 PKLVMKGITHGACD----YLLKPVRI 120 (663)
Q Consensus 99 ~e~v~kAl~aGA~D----YLlKPvs~ 120 (663)
.+....+...|++. |+.||...
T Consensus 214 ~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 214 PEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred HHHHHHHHHcCCCEEeeceeccCCCC
Confidence 77888888999863 67788654
No 423
>cd06354 PBP1_BmpA_PnrA_like Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type I periplasmic sugar-binding protein-like fold.
Probab=27.79 E-value=3.1e+02 Score=27.84 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCEEEEECC--H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006057 26 CLLLLETLLRRCQYHVTTTSQ--A---ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSG 95 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~tasd--g---~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA 95 (663)
....++..+++.||.+..+.. . .+.++.+..+ .+|-||+-- +..+ -...+.++...++|||++..
T Consensus 20 ~~~gi~~~~~~~gy~~~i~~~~~~~~~~~~i~~l~~~--~vdgiI~~~--~~~~-~~~~~~~~~~~~~PiV~i~~ 89 (265)
T cd06354 20 AWEGLERAAKELGIEYKYVESKSDADYEPNLEQLADA--GYDLIVGVG--FLLA-DALKEVAKQYPDQKFAIIDA 89 (265)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCHHHHHHHHHHHHhC--CCCEEEEcC--cchH-HHHHHHHHHCCCCEEEEEec
Confidence 455677777888998776532 2 2345555443 689888721 1122 23334444445789988754
No 424
>PRK01581 speE spermidine synthase; Validated
Probab=27.66 E-value=3.3e+02 Score=30.73 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=35.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHH--HHH---hC---CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLET--LLR---RC---QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP 71 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~--lL~---~~---gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MP 71 (663)
+...+|.+||=|+...+..+. .|. +. +-+|. .+.|+.+.+. .....||+||+|+--|
T Consensus 172 ~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~---~~~~~YDVIIvDl~DP 237 (374)
T PRK01581 172 ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLS---SPSSLYDVIIIDFPDP 237 (374)
T ss_pred CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHH---hcCCCccEEEEcCCCc
Confidence 344689999999988777775 221 11 12343 4566665554 3345799999997544
No 425
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=27.63 E-value=3.4e+02 Score=27.34 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=35.5
Q ss_pred HHHHHHHHHhCCCEEEEEC--CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 27 LLLLETLLRRCQYHVTTTS--QAI---TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~tas--dg~---EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
...+++.+++.||.+..+. +.+ +.++.+... .+|-||+ +|....-.+.+.+.....+|||++...
T Consensus 20 ~~gi~~~~~~~gy~~~~~~~~~~~~~~~~~~~l~~~--~vdgiii---~~~~~~~~~~~~~~~~~~ipvv~~~~~ 89 (260)
T cd06304 20 YEGLEKAEKELGVEVKYVESVEDADYEPNLRQLAAQ--GYDLIFG---VGFGFMDAVEKVAKEYPDVKFAIIDGV 89 (260)
T ss_pred HHHHHHHHHhcCceEEEEecCCHHHHHHHHHHHHHc--CCCEEEE---CCcchhHHHHHHHHHCCCCEEEEecCc
Confidence 3556667777899877543 222 334444443 5886666 222212233344444457898888653
No 426
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=27.54 E-value=3.2e+02 Score=27.72 Aligned_cols=71 Identities=15% Similarity=0.213 Sum_probs=52.2
Q ss_pred ECCHHHHHHHHHhcCCCc-eEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 44 TSQAITALKLLRENKNKF-DLVISDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 44 asdg~EALelLre~k~~p-DLVIlDv~MPd---mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
..++.++.+.+.+. .+ .++++|+.--+ ..-+++++.+.+...+||++=.+-...+.+.+++..|++..++-
T Consensus 29 ~~dp~~~a~~~~~~--g~~~i~i~dl~~~~~~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg 103 (232)
T TIGR03572 29 IGDPVNAARIYNAK--GADELIVLDIDASKRGREPLFELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSIN 103 (232)
T ss_pred CCCHHHHHHHHHHc--CCCEEEEEeCCCcccCCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 34788887777653 34 48888987643 23466777777667899988777788888889999998887765
No 427
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=27.45 E-value=4.7e+02 Score=29.28 Aligned_cols=108 Identities=14% Similarity=0.155 Sum_probs=55.6
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 15 LRVLAVDDD-PTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD-~~~r~iL~~lL~~~gy~V~ta--sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
++++|+.+- +...+.++.+..+.+..+... -+.+++..++. ..|++++--. -+.-|+.+++.+ ...+|+|
T Consensus 321 ~~lvi~G~g~~~~~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~----~aDv~l~pS~-~E~~gl~~lEAm--a~G~pvI 393 (473)
T TIGR02095 321 GQLVVLGTGDPELEEALRELAERYPGNVRVIIGYDEALAHLIYA----GADFILMPSR-FEPCGLTQLYAM--RYGTVPI 393 (473)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHCCCcEEEEEcCCHHHHHHHHH----hCCEEEeCCC-cCCcHHHHHHHH--HCCCCeE
Confidence 455555443 233444444444433333221 12222333332 2466665221 123344444433 3456776
Q ss_pred EEecCCChHHHHHHHhcC------CceEEeCCCCHHHHHHHHHHHHHh
Q 006057 92 MLSGNGDPKLVMKGITHG------ACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aG------A~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+ +.... ..+.+..| .++|+..|.++++|..++..++..
T Consensus 394 ~-s~~gg---~~e~v~~~~~~~~~~~G~l~~~~d~~~la~~i~~~l~~ 437 (473)
T TIGR02095 394 V-RRTGG---LADTVVDGDPEAESGTGFLFEEYDPGALLAALSRALRL 437 (473)
T ss_pred E-ccCCC---ccceEecCCCCCCCCceEEeCCCCHHHHHHHHHHHHHH
Confidence 4 33222 22233444 789999999999999999988763
No 428
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=27.26 E-value=8.3e+02 Score=26.52 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=43.0
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC-------CCCHHHHHHHHHHHHHhhc
Q 006057 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK-------PVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 77 eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK-------Pvs~eeL~~~~q~Vlrr~~ 135 (663)
+.++.++...++|||...+-.+.+.+.+++.+||+..-+- |--..++..-+...+.++.
T Consensus 227 ~~v~~v~~~~~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~~~g 292 (325)
T cd04739 227 RWIAILSGRVKASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWMEEHG 292 (325)
T ss_pred HHHHHHHcccCCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHHHHcC
Confidence 4455555556899999999999999999999999875332 6555666666666665543
No 429
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=27.22 E-value=4.7e+02 Score=26.17 Aligned_cols=54 Identities=28% Similarity=0.379 Sum_probs=36.5
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|..+++.+ ...+|||+- .... ..+.+..+..+++.++-+.+++..++..++...
T Consensus 292 ~~~~~Ea~--~~G~pvI~~-~~~~---~~~~~~~~~~g~~~~~~~~~~l~~~i~~~~~~~ 345 (377)
T cd03798 292 GLVLLEAM--ACGLPVVAT-DVGG---IPEIITDGENGLLVPPGDPEALAEAILRLLADP 345 (377)
T ss_pred ChHHHHHH--hcCCCEEEe-cCCC---hHHHhcCCcceeEECCCCHHHHHHHHHHHhcCc
Confidence 33444433 246788753 3222 345567788889999999999999998887543
No 430
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=27.19 E-value=2.2e+02 Score=30.58 Aligned_cols=82 Identities=15% Similarity=0.308 Sum_probs=56.2
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeC---C-----CCCCCHHHHHHHHhccCCCcEEEEecC-CChHHHHHHHhcCCceEE
Q 006057 44 TSQAITALKLLRENKNKFDLVISDV---H-----MPDMDGFKLLELVGLEMDLPVIMLSGN-GDPKLVMKGITHGACDYL 114 (663)
Q Consensus 44 asdg~EALelLre~k~~pDLVIlDv---~-----MPdmDG~eLLe~Ir~~~dIPVIILSA~-~d~e~v~kAl~aGA~DYL 114 (663)
+.+.++|.+.+++. .+|.+-+.+ | -|.. ++++++.|++..++|+++.-+. -..+.+.+++++|++.+=
T Consensus 152 ~t~~eea~~f~~~t--gvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~~iPlv~hGgSGi~~e~i~~~i~~Gi~kiN 228 (282)
T TIGR01859 152 LADPDEAEQFVKET--GVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELTNIPLVLHGASGIPEEQIKKAIKLGIAKIN 228 (282)
T ss_pred cCCHHHHHHHHHHH--CcCEEeeccCccccccCCCCcc-CHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 55889999888643 578777542 2 1333 4889998887778999888633 345678899999998875
Q ss_pred eCCCCHHHHHHHHHHHHH
Q 006057 115 LKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 115 lKPvs~eeL~~~~q~Vlr 132 (663)
.-- +|+.++...++
T Consensus 229 v~T----~l~~a~~~~~~ 242 (282)
T TIGR01859 229 IDT----DCRIAFTAAIR 242 (282)
T ss_pred ECc----HHHHHHHHHHH
Confidence 543 45555555443
No 431
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=27.11 E-value=5.4e+02 Score=26.51 Aligned_cols=93 Identities=18% Similarity=0.009 Sum_probs=53.2
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCc-EE-EEecCCChHHHHHHHh
Q 006057 32 TLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLP-VI-MLSGNGDPKLVMKGIT 107 (663)
Q Consensus 32 ~lL~~~gy-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~-dIP-VI-ILSA~~d~e~v~kAl~ 107 (663)
..|...+. -|....+.++++.+++.-. .--+=++++.|-.-+.++.++.+++.. +-| ++ -.-.--+.+.+.++++
T Consensus 8 ~~l~~~~vi~vir~~~~~~a~~~~~al~-~~Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 8 TKLKANGVVAVVRGESKEEALKISLAVI-KGGIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHH-HCCCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHH
Confidence 34444443 3555667777766554310 112445566666667888888886543 223 32 2333456788999999
Q ss_pred cCCceEEeCCCCHHHHHH
Q 006057 108 HGACDYLLKPVRIEELKN 125 (663)
Q Consensus 108 aGA~DYLlKPvs~eeL~~ 125 (663)
+||...+..-++++-+..
T Consensus 87 aGA~FivsP~~~~~v~~~ 104 (213)
T PRK06552 87 AGAQFIVSPSFNRETAKI 104 (213)
T ss_pred cCCCEEECCCCCHHHHHH
Confidence 998755544455544433
No 432
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=27.07 E-value=3.2e+02 Score=30.19 Aligned_cols=63 Identities=21% Similarity=0.074 Sum_probs=38.9
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 006057 15 LRVLAVDDDPTC-----LLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (663)
Q Consensus 15 lRVLIVDDD~~~-----r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe 80 (663)
-|+|||-|.... .+.+...|+..+.++..+. ...++.+.+++. .+|+||. +.+..-+++.+
T Consensus 27 kr~livtd~~~~~~~g~~~~v~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~aK 101 (383)
T cd08186 27 SKVLLVTGKSAYKKSGAWDKVEPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREF--GAQAVIA---IGGGSPIDSAK 101 (383)
T ss_pred CEEEEEcCccHHhhcChHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHc--CCCEEEE---eCCccHHHHHH
Confidence 488888876543 3567788887776665543 234555666654 6788774 35555555555
Q ss_pred HH
Q 006057 81 LV 82 (663)
Q Consensus 81 ~I 82 (663)
.+
T Consensus 102 ~i 103 (383)
T cd08186 102 SA 103 (383)
T ss_pred HH
Confidence 43
No 433
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=27.00 E-value=4.4e+02 Score=28.08 Aligned_cols=90 Identities=12% Similarity=0.000 Sum_probs=0.0
Q ss_pred EEEEeCC-------HHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC--C
Q 006057 17 VLAVDDD-------PTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM--D 87 (663)
Q Consensus 17 VLIVDDD-------~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~--d 87 (663)
|||.|++ ......+++.+...-...+++.+.+++.+.+... +|+|.+|-.-| +.++++.... .
T Consensus 155 vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~~~g---aDyI~ld~~~~-----e~l~~~~~~~~~~ 226 (268)
T cd01572 155 VLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEALEAG---ADIIMLDNMSP-----EELREAVALLKGR 226 (268)
T ss_pred eeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHcC---CCEEEECCcCH-----HHHHHHHHHcCCC
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+| |+.++--..+.+....+.|++.+-+
T Consensus 227 ip-i~AiGGI~~~ni~~~a~~Gvd~Iav 253 (268)
T cd01572 227 VL-LEASGGITLENIRAYAETGVDYISV 253 (268)
T ss_pred Cc-EEEECCCCHHHHHHHHHcCCCEEEE
No 434
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=26.97 E-value=5.5e+02 Score=28.99 Aligned_cols=117 Identities=15% Similarity=0.221 Sum_probs=62.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-------------------EECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVT-------------------TTSQAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~-------------------tasdg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
.||||||..--..-.+..++ .+.++ .|. ...+.++.++.+++. .+|+|+....-|-
T Consensus 4 ~~kvLviG~g~rehal~~~~-~~~~~~~~~~~~pgn~g~~~~~~~~~~~~~~~d~~~l~~~a~~~--~iD~Vv~g~E~~l 80 (426)
T PRK13789 4 KLKVLLIGSGGRESAIAFAL-RKSNLLSELKVFPGNGGFPDDELLPADSFSILDKSSVQSFLKSN--PFDLIVVGPEDPL 80 (426)
T ss_pred CcEEEEECCCHHHHHHHHHH-HhCCCCCEEEEECCchHHhccccccccCcCcCCHHHHHHHHHHc--CCCEEEECCchHH
Confidence 48999998876544444433 43331 111 123555555666654 6999998765554
Q ss_pred CCHH-HHHHHHh------------------------ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC--------
Q 006057 73 MDGF-KLLELVG------------------------LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-------- 119 (663)
Q Consensus 73 mDG~-eLLe~Ir------------------------~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs-------- 119 (663)
..|+ +.++.++ ....+|+.-.....+.+.+.++++.--.-+++||..
T Consensus 81 ~~glad~~~~~Gip~~Gp~~~aa~le~dK~~~K~~l~~~gIpt~~~~~~~~~~ea~~~~~~~~~PvVVKp~~~~~gkGV~ 160 (426)
T PRK13789 81 VAGFADWAAELGIPCFGPDSYCAQVEGSKHFAKSLMKEAKIPTASYKTFTEYSSSLSYLESEMLPIVIKADGLAAGKGVT 160 (426)
T ss_pred HHHHHHHHHHcCCCcCCCHHHHHHHHcCHHHHHHHHHHcCCCCCCeEeeCCHHHHHHHHHhcCCCEEEEeCCCCCCCcEE
Confidence 4444 2221110 112455431111123344444443223478999865
Q ss_pred ----HHHHHHHHHHHHHh
Q 006057 120 ----IEELKNIWQHVVRR 133 (663)
Q Consensus 120 ----~eeL~~~~q~Vlrr 133 (663)
.+++..+|+.++..
T Consensus 161 vv~~~eel~~a~~~~~~~ 178 (426)
T PRK13789 161 VATEKKMAKRALKEIFKD 178 (426)
T ss_pred EECCHHHHHHHHHHHHhh
Confidence 77888888887643
No 435
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=26.97 E-value=3.7e+02 Score=28.99 Aligned_cols=76 Identities=14% Similarity=0.047 Sum_probs=47.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEE-----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY-HVTTT-----SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD 87 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy-~V~ta-----sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~d 87 (663)
+-|+|||-|... .+.+...|+..+. .+..+ .+.+++.+.++..+ ++|+||- +.+..-+++.+.+.....
T Consensus 25 ~~r~livtd~~~-~~~~~~~L~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~d~iIa---iGGGsv~D~aK~vA~~~~ 99 (331)
T cd08174 25 FGRVAVVSGPGV-GEQVAESLKTSFSAEVEAVEEVSNSDAEEIGARARSIP-NVDAVVG---IGGGKVIDVAKYAAFLRG 99 (331)
T ss_pred CCceEEEECCcH-HHHHHHHHHhccCceEEEecCCCccCHHHHHHHHHhcc-CCCEEEE---eCCcHHHHHHHHHHhhcC
Confidence 357888876654 4556666665443 33322 35556666666543 5788873 466677777777766667
Q ss_pred CcEEEEe
Q 006057 88 LPVIMLS 94 (663)
Q Consensus 88 IPVIILS 94 (663)
+|+|.+.
T Consensus 100 ~p~i~vP 106 (331)
T cd08174 100 IPLSVPT 106 (331)
T ss_pred CCEEEec
Confidence 8887764
No 436
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=26.95 E-value=2.1e+02 Score=29.50 Aligned_cols=81 Identities=16% Similarity=0.199 Sum_probs=43.9
Q ss_pred HHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHhcc-----CCCcEEEEecC
Q 006057 32 TLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDMDG-------FKLLELVGLE-----MDLPVIMLSGN 96 (663)
Q Consensus 32 ~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MPdmDG-------~eLLe~Ir~~-----~dIPVIILSA~ 96 (663)
..+++.|..+..+- ...+.++.+.. ..|+|++=..-|+..| ++-++++++. .++||.+.-+
T Consensus 100 ~~ik~~g~k~GlalnP~Tp~~~i~~~l~---~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGG- 175 (220)
T PRK08883 100 QLIKEHGCQAGVVLNPATPLHHLEYIMD---KVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGG- 175 (220)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHH---hCCeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECC-
Confidence 34445565544332 23333332222 4676666444566555 3334444322 2366665444
Q ss_pred CChHHHHHHHhcCCceEEeC
Q 006057 97 GDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 97 ~d~e~v~kAl~aGA~DYLlK 116 (663)
-..+.+.++.++||+.++.-
T Consensus 176 I~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 176 VKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred CCHHHHHHHHHcCCCEEEEe
Confidence 44788999999999987543
No 437
>PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated
Probab=26.83 E-value=6.3e+02 Score=31.32 Aligned_cols=117 Identities=16% Similarity=0.218 Sum_probs=73.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC----CCEEE-EECCHHHHHHH----------------HHhcCCCceEEEEeCCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRC----QYHVT-TTSQAITALKL----------------LRENKNKFDLVISDVHM 70 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~----gy~V~-tasdg~EALel----------------Lre~k~~pDLVIlDv~M 70 (663)
+....|++...++.....+..+++.. |.+|. .|..+.|.++. ++. ..+|++++|++-
T Consensus 235 ~~~vnI~vhGHnp~l~~~iv~~~~~~el~~gI~~~GiCCTg~e~~R~~~g~~~~Gn~~~qe~~i~T--GavD~~VvD~QC 312 (781)
T PRK00941 235 KSKPVILVIGHNVAPGTYIIDYLEENGLTDKVEVCGICCTAIDITRYSEKAKVVGPLSKQLKFIRS--GIPDVIVVDEQC 312 (781)
T ss_pred CCCcEEEEECCCchHHHHHHHHHhCcchhhCceEEEEecccchHhhhccCCcccCcHHHHHHHHHc--CCCcEEEEeccc
Confidence 44568999999999888888887532 55543 66666665533 232 479999999974
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEec----------CCChHHHHHHHhcCC--ceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 71 PDMDGFKLLELVGLEMDLPVIMLSG----------NGDPKLVMKGITHGA--CDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 71 PdmDG~eLLe~Ir~~~dIPVIILSA----------~~d~e~v~kAl~aGA--~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
---+-.++. +....++|-++. +.+.+.+.+.+..|- --+|+-|...-|+.-.+...+...
T Consensus 313 i~p~L~eiA----~~ygt~lItTs~k~~~eLPdit~~die~Ii~~L~~~~~~g~~i~~~~k~g~~a~~~a~~~~~~ 384 (781)
T PRK00941 313 VRTDILEEA----KKLGIPVIATNDKICLGLPDRTDEDVDEIIEDLVSGKIPGALILDPEKVGEVAVRVAKAVAPI 384 (781)
T ss_pred CcccHHHHH----HHhCCCEEEecccccccCCCCCccCHHHHHHHHHhCCCCeeEEecHHHHHHHHHHHHHHHhhh
Confidence 333333333 334556665543 345666666665554 457788888888877666655443
No 438
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=26.64 E-value=6.6e+02 Score=27.27 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=39.1
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE------eC-CCCHHHHHHHHHHHHHhh
Q 006057 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL------LK-PVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 77 eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL------lK-Pvs~eeL~~~~q~Vlrr~ 134 (663)
+.+..++....+|||...+-...+.+.+++.+||+..- .+ |--..++..-++.++.+.
T Consensus 229 ~~v~~~~~~~~ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~~g~~~~~~i~~~L~~~l~~~ 293 (334)
T PRK07565 229 RWIAILSGRVGADLAATTGVHDAEDVIKMLLAGADVVMIASALLRHGPDYIGTILRGLEDWMERH 293 (334)
T ss_pred HHHHHHHhhcCCCEEEECCCCCHHHHHHHHHcCCCceeeehHHhhhCcHHHHHHHHHHHHHHHHc
Confidence 33444555557999999999999999999999998653 22 433444555555555443
No 439
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=26.62 E-value=2.8e+02 Score=29.82 Aligned_cols=71 Identities=18% Similarity=0.280 Sum_probs=50.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeC--CC---C--CCCHHHHHHHHhccCCCcEEEEecCC-ChHHHHHHHhcCCceEE
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDV--HM---P--DMDGFKLLELVGLEMDLPVIMLSGNG-DPKLVMKGITHGACDYL 114 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv--~M---P--dmDG~eLLe~Ir~~~dIPVIILSA~~-d~e~v~kAl~aGA~DYL 114 (663)
.+.+.++|.+..++. .+|.+-+-+ .- + ..=|++.++.|+...++|++++-+.. ..+.+.++++.|++.+=
T Consensus 151 s~t~~eea~~f~~~t--g~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~iPlV~hG~SGI~~e~~~~~i~~G~~kin 228 (281)
T PRK06806 151 LLTSTTEAKRFAEET--DVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVVHIPLVLHGGSGISPEDFKKCIQHGIRKIN 228 (281)
T ss_pred eeCCHHHHHHHHHhh--CCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHcCCcEEE
Confidence 367889998887642 478776632 11 1 12478999999877789999887443 55678899999998764
Q ss_pred e
Q 006057 115 L 115 (663)
Q Consensus 115 l 115 (663)
+
T Consensus 229 v 229 (281)
T PRK06806 229 V 229 (281)
T ss_pred E
Confidence 4
No 440
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=26.53 E-value=6.1e+02 Score=29.41 Aligned_cols=100 Identities=16% Similarity=0.190 Sum_probs=59.3
Q ss_pred CCcEEEEEeCCH----HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeC------CCCCCCH----
Q 006057 13 SGLRVLAVDDDP----TCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDV------HMPDMDG---- 75 (663)
Q Consensus 13 ~glRVLIVDDD~----~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv------~MPdmDG---- 75 (663)
.|.++++||--. ...+.++.+=... +..|. -+.+.+.|..++.. ..|.|-+-+ .+....|
T Consensus 236 aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~---G~d~i~vg~g~Gs~~ttr~~~~~g~~ 312 (475)
T TIGR01303 236 AGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEA---GANIIKVGVGPGAMCTTRMMTGVGRP 312 (475)
T ss_pred hCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHh---CCCEEEECCcCCccccCccccCCCCc
Confidence 467888888432 2333333333222 33433 35677888877764 467776211 1222222
Q ss_pred -----HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 76 -----FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 76 -----~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+++.+.++ ...+|||.-.+......+.+|+.+||+...+-
T Consensus 313 ~~~a~~~~~~~~~-~~~~~viadGgi~~~~di~kala~GA~~vm~g 357 (475)
T TIGR01303 313 QFSAVLECAAEAR-KLGGHVWADGGVRHPRDVALALAAGASNVMVG 357 (475)
T ss_pred hHHHHHHHHHHHH-HcCCcEEEeCCCCCHHHHHHHHHcCCCEEeec
Confidence 12222223 23799999888899999999999999887654
No 441
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=26.52 E-value=3.8e+02 Score=26.98 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=51.5
Q ss_pred ECCHHHHHHHHHhcCCCc-eEEEEeCCC---CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 44 TSQAITALKLLRENKNKF-DLVISDVHM---PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 44 asdg~EALelLre~k~~p-DLVIlDv~M---PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
..++.+..+.+.+. .+ .+.++|+.- ....-+++++.+.+...+||++=.+-.+.+.+.+++..||+..++--
T Consensus 29 ~~~~~~~a~~~~~~--g~~~i~v~dld~~~~g~~~~~~~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~ 104 (233)
T PRK00748 29 SDDPVAQAKAWEDQ--GAKWLHLVDLDGAKAGKPVNLELIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGT 104 (233)
T ss_pred cCCHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECc
Confidence 34777777777653 34 477778742 11244778887777678999987788888999999999998876554
No 442
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.44 E-value=3.4e+02 Score=28.39 Aligned_cols=72 Identities=17% Similarity=0.258 Sum_probs=54.0
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 44 TSQAITALKLLRENKNKFDLVISDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 44 asdg~EALelLre~k~~pDLVIlDv~MPd---mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
..++.+..+.+.+.. .=.|+++|+.--+ ..-+++++.+.....+||++=.+-...+.+.+++..|++.+++-
T Consensus 29 ~~dp~~~a~~~~~~g-~~~l~i~Dl~~~~~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~d~~~l~~~G~~~vvig 103 (258)
T PRK01033 29 IGDPINAVRIFNEKE-VDELIVLDIDASKRGSEPNYELIENLASECFMPLCYGGGIKTLEQAKKIFSLGVEKVSIN 103 (258)
T ss_pred CCCHHHHHHHHHHcC-CCEEEEEECCCCcCCCcccHHHHHHHHHhCCCCEEECCCCCCHHHHHHHHHCCCCEEEEC
Confidence 457777777776542 2368889997653 23378888887777899988777888889999999999987765
No 443
>PRK11829 biofilm formation regulator HmsP; Provisional
Probab=26.43 E-value=4.8e+02 Score=30.49 Aligned_cols=98 Identities=15% Similarity=0.194 Sum_probs=62.1
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhc-CCCceEEEEeCC----CCCCCH--HHHHHHHhccCCCcEEEEecCCC
Q 006057 28 LLLETLLRRCQYHVT--TTSQAITALKLLREN-KNKFDLVISDVH----MPDMDG--FKLLELVGLEMDLPVIMLSGNGD 98 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~--tasdg~EALelLre~-k~~pDLVIlDv~----MPdmDG--~eLLe~Ir~~~dIPVIILSA~~d 98 (663)
..+-..|+..|+.+. -+..+...+..++.. .-.||.|=+|-. ++. +. ...+..+.+..++.|| ..+-..
T Consensus 542 ~~~~~~l~~~G~~ialDdfG~g~ss~~~L~~~~~l~~d~iKid~~~~~~~~~-~~~~~~~i~~~a~~l~~~vi-aegVEt 619 (660)
T PRK11829 542 LRLLRELQGLGLLIALDDFGIGYSSLRYLNHLKSLPIHMIKLDKSFVKNLPE-DDAIARIISCVSDVLKVRVM-AEGVET 619 (660)
T ss_pred HHHHHHHHhCCCEEEEECCCCchhhHHHHhccCCCCCcEEEECHHHHhcccC-CHHHHHHHHHHHHHcCCeEE-EecCCC
Confidence 344556777788766 456777778887750 036899988842 222 21 2222233344566665 455566
Q ss_pred hHHHHHHHhcCCc----eEEeCCCCHHHHHHHH
Q 006057 99 PKLVMKGITHGAC----DYLLKPVRIEELKNIW 127 (663)
Q Consensus 99 ~e~v~kAl~aGA~----DYLlKPvs~eeL~~~~ 127 (663)
.+....+.+.|++ .|+.||...+++....
T Consensus 620 ~~~~~~l~~~g~d~~QGy~~~~P~~~~~~~~~~ 652 (660)
T PRK11829 620 EEQRQWLLEHGIQCGQGFLFSPPLPRAEFEAQY 652 (660)
T ss_pred HHHHHHHHHcCCCEEecCcccCCCCHHHHHHHh
Confidence 6677788889985 4799999999886644
No 444
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=26.36 E-value=3.9e+02 Score=27.73 Aligned_cols=97 Identities=12% Similarity=0.057 Sum_probs=59.2
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEE-eCCCCC--------CCHHHHHHHHhc
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTT-T--SQAITALKLLRENKNKFDLVIS-DVHMPD--------MDGFKLLELVGL 84 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~t-a--sdg~EALelLre~k~~pDLVIl-Dv~MPd--------mDG~eLLe~Ir~ 84 (663)
|++.|-.......+...+++.|..... + ....+.++.+... ..+.|++ -+ +|. .+..+.+++++.
T Consensus 108 iiipDl~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~--~~~~vy~~s~-~g~tG~~~~~~~~~~~~i~~lr~ 184 (242)
T cd04724 108 LIIPDLPPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAEL--ASGFIYYVSR-TGVTGARTELPDDLKELIKRIRK 184 (242)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhh--CCCCEEEEeC-CCCCCCccCCChhHHHHHHHHHh
Confidence 444454555455566666676754332 2 2334555555542 2343332 22 221 134566777777
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
..++||++=.+-...+.+.++.++ |+.+++-.
T Consensus 185 ~~~~pI~vggGI~~~e~~~~~~~~-ADgvVvGS 216 (242)
T cd04724 185 YTDLPIAVGFGISTPEQAAEVAKY-ADGVIVGS 216 (242)
T ss_pred cCCCcEEEEccCCCHHHHHHHHcc-CCEEEECH
Confidence 778999987777778889999999 99998874
No 445
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=26.27 E-value=7.2e+02 Score=25.44 Aligned_cols=109 Identities=18% Similarity=0.197 Sum_probs=62.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCC-CCCCCHHHHHHHHhccCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKFDLVISDVH-MPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tas--dg~EALelLre~k~~pDLVIlDv~-MPdmDG~eLLe~Ir~~~dI 88 (663)
.++++|+.+.+. ...++++++..+. .|.... +.++..+++. ..|++++-.. ..+.-|+.+++.+. ..+
T Consensus 218 ~~~l~i~G~g~~-~~~~~~~~~~~~~~~~V~~~g~v~~~~~~~~~~----~ad~~i~ps~~~~e~~g~~~~Ea~~--~g~ 290 (357)
T cd03795 218 DAPLVIVGEGPL-EAELEALAAALGLLDRVRFLGRLDDEEKAALLA----ACDVFVFPSVERSEAFGIVLLEAMA--FGK 290 (357)
T ss_pred CcEEEEEeCChh-HHHHHHHHHhcCCcceEEEcCCCCHHHHHHHHH----hCCEEEeCCcccccccchHHHHHHH--cCC
Confidence 456777765543 3345555544432 344333 2334444544 2477665321 12344666776653 468
Q ss_pred cEEEEecCCChHHHHHHHh-cCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 89 PVIMLSGNGDPKLVMKGIT-HGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~-aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|||+--..... ..+. .|..+++..|-+.+++..++..++..
T Consensus 291 Pvi~~~~~~~~----~~i~~~~~~g~~~~~~d~~~~~~~i~~l~~~ 332 (357)
T cd03795 291 PVISTEIGTGG----SYVNLHGVTGLVVPPGDPAALAEAIRRLLED 332 (357)
T ss_pred CEEecCCCCch----hHHhhCCCceEEeCCCCHHHHHHHHHHHHHC
Confidence 88863222222 2333 47889999999999999999998864
No 446
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=26.13 E-value=5.9e+02 Score=28.36 Aligned_cols=86 Identities=17% Similarity=0.115 Sum_probs=55.8
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEecCCC
Q 006057 28 LLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE--MDLPVIMLSGNGD 98 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~~--~dIPVIILSA~~d 98 (663)
+.|+.+-+..+..|+ -+...++|..+... .+|.|++.-|-. ....++.+..+... .++|||+-.+-..
T Consensus 211 ~~l~~lr~~~~~PvivKgv~~~~dA~~a~~~---G~d~I~vsnhGGr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~ 287 (351)
T cd04737 211 ADIEFIAKISGLPVIVKGIQSPEDADVAINA---GADGIWVSNHGGRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRR 287 (351)
T ss_pred HHHHHHHHHhCCcEEEecCCCHHHHHHHHHc---CCCEEEEeCCCCccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCC
Confidence 444444444454444 24577888766653 578887743211 11235666666432 3699999999999
Q ss_pred hHHHHHHHhcCCceEEeC
Q 006057 99 PKLVMKGITHGACDYLLK 116 (663)
Q Consensus 99 ~e~v~kAl~aGA~DYLlK 116 (663)
...+.+++.+||+...+-
T Consensus 288 g~Di~kaLalGA~~V~iG 305 (351)
T cd04737 288 GEHVFKALASGADAVAVG 305 (351)
T ss_pred HHHHHHHHHcCCCEEEEC
Confidence 999999999999986544
No 447
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=26.02 E-value=4.5e+02 Score=28.69 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=39.8
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-----EECCHHHHHHHHHhcCCCceEEEEe
Q 006057 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVT-----TTSQAITALKLLRENKNKFDLVISD 67 (663)
Q Consensus 9 ~~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~-----tasdg~EALelLre~k~~pDLVIlD 67 (663)
.-|...=|||=+|-|+..++.--..-++.+..+. .-..++...++|.+. +|||+++-
T Consensus 100 ~~F~~PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll~~~--~PDIlViT 161 (287)
T PF05582_consen 100 EYFERPGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLLEEY--RPDILVIT 161 (287)
T ss_pred cccCCCCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHHHHc--CCCEEEEe
Confidence 3454445999999999988877777777765443 333455566777754 79998873
No 448
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=26.00 E-value=4.5e+02 Score=28.18 Aligned_cols=86 Identities=20% Similarity=0.260 Sum_probs=53.6
Q ss_pred HHHHHHHHhCCCEEEEECCHHHHHH-------HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCC
Q 006057 28 LLLETLLRRCQYHVTTTSQAITALK-------LLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGD 98 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~tasdg~EALe-------lLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~dIPVIILSA~~d 98 (663)
..+.+.|++.|+.+.........+. ...+....+|+||+ -+.||- +|+..+. ..++||+-+-
T Consensus 3 ~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~----iGGDGT-~L~aa~~~~~~~~PilgIn---- 73 (272)
T PRK02231 3 KNLFHWLKERGYQVLVEKEIAEQLNLPENHLASLEEIGQRAQLAIV----IGGDGN-MLGRARVLAKYDIPLIGIN---- 73 (272)
T ss_pred HHHHHHHHHCCCEEEEecchhhhcCccccccCChHHhCcCCCEEEE----ECCcHH-HHHHHHHhccCCCcEEEEe----
Confidence 3456677777888776543222111 00111124788887 577883 4544432 3478988663
Q ss_pred hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 99 PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 99 ~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.|-.+||. .++++++...+..++.
T Consensus 74 ---------~G~lGFL~-~~~~~~~~~~l~~~~~ 97 (272)
T PRK02231 74 ---------RGNLGFLT-DIDPKNAYEQLEACLE 97 (272)
T ss_pred ---------CCCCcccc-cCCHHHHHHHHHHHHh
Confidence 36678888 5888999999988887
No 449
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional
Probab=25.92 E-value=3.2e+02 Score=29.18 Aligned_cols=77 Identities=19% Similarity=0.159 Sum_probs=51.6
Q ss_pred cEEEEEeCCHHHH-HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCC--CCCC-----CHHHHHHHHhccC
Q 006057 15 LRVLAVDDDPTCL-LLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVH--MPDM-----DGFKLLELVGLEM 86 (663)
Q Consensus 15 lRVLIVDDD~~~r-~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~--MPdm-----DG~eLLe~Ir~~~ 86 (663)
.+|.++|..|... ..+.+.|...|..|+...+..-+. +.. ++|.||+..+ +.++ -|--.+....+..
T Consensus 110 ~~V~v~ESrP~~eG~~~a~~L~~~GI~vtli~Dsa~~~--~m~---~vd~VlvGAd~V~~nG~v~nkvGT~~~Al~A~~~ 184 (253)
T PRK06372 110 KSVYILESRPMLEGIDMAKLLVKSGIDVVLLTDASMCE--AVL---NVDAVIVGSDSVLYDGGLIHKNGTFPLALCARYL 184 (253)
T ss_pred CEEEEecCCCchHHHHHHHHHHHCCCCEEEEehhHHHH--HHH---hCCEEEECccEEecCCCEeehhhHHHHHHHHHHc
Confidence 4899999888632 456777777898888776664433 222 4889988554 3333 3445556666778
Q ss_pred CCcEEEEecC
Q 006057 87 DLPVIMLSGN 96 (663)
Q Consensus 87 dIPVIILSA~ 96 (663)
.+||++++..
T Consensus 185 ~vPv~V~~~s 194 (253)
T PRK06372 185 KKPFYSLTIS 194 (253)
T ss_pred CCCEEEEeec
Confidence 9999997764
No 450
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=25.88 E-value=4.4e+02 Score=25.85 Aligned_cols=73 Identities=25% Similarity=0.282 Sum_probs=46.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHh---CCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRR---CQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM 86 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~---~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~ 86 (663)
|.-.-+.||.||+..+..|+.-..+ .+. -|+-+. -.+++..|++. .+.+ .|--.+|-++.++++. .
T Consensus 60 pg~~plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~-t~~~L~~Lr~l--apgl-----~l~P~sgddLA~rL~l-~ 130 (142)
T PF11072_consen 60 PGLQPLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVA-TEAALQRLRQL--APGL-----PLLPVSGDDLARRLGL-S 130 (142)
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecC-CHHHHHHHHHH--cCCC-----eecCCCHHHHHHHhCC-C
Confidence 4334699999999999998876544 332 233333 34566777654 2443 4445689999998854 4
Q ss_pred CCcEEEE
Q 006057 87 DLPVIML 93 (663)
Q Consensus 87 dIPVIIL 93 (663)
+-||+|-
T Consensus 131 HYPvLIt 137 (142)
T PF11072_consen 131 HYPVLIT 137 (142)
T ss_pred cccEEee
Confidence 5688753
No 451
>PRK08185 hypothetical protein; Provisional
Probab=25.85 E-value=2.7e+02 Score=30.10 Aligned_cols=82 Identities=16% Similarity=0.354 Sum_probs=55.9
Q ss_pred ECCHHHHHHHHHhcCCCceEEEEeC---C-------CCCCCHHHHHHHHhccCCCcEEEEecCC-ChHHHHHHHhcCCce
Q 006057 44 TSQAITALKLLRENKNKFDLVISDV---H-------MPDMDGFKLLELVGLEMDLPVIMLSGNG-DPKLVMKGITHGACD 112 (663)
Q Consensus 44 asdg~EALelLre~k~~pDLVIlDv---~-------MPdmDG~eLLe~Ir~~~dIPVIILSA~~-d~e~v~kAl~aGA~D 112 (663)
.++.++|.+.++.. .+|.+-+-+ | -|+.+ +++++.|+...++|+++..+.. ..+.+++|+..|++-
T Consensus 148 ~t~peea~~f~~~T--gvD~LAvaiGt~HG~y~~~~kp~L~-~e~l~~I~~~~~iPLVlHGgsg~~~e~~~~ai~~GI~K 224 (283)
T PRK08185 148 YTDPEQAEDFVSRT--GVDTLAVAIGTAHGIYPKDKKPELQ-MDLLKEINERVDIPLVLHGGSANPDAEIAESVQLGVGK 224 (283)
T ss_pred CCCHHHHHHHHHhh--CCCEEEeccCcccCCcCCCCCCCcC-HHHHHHHHHhhCCCEEEECCCCCCHHHHHHHHHCCCeE
Confidence 45888898888753 578777733 1 25555 8999999877789999886653 456788899999765
Q ss_pred EEeCCCCHHHHHHHHHHHHH
Q 006057 113 YLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 113 YLlKPvs~eeL~~~~q~Vlr 132 (663)
+=.- -+|+.++...++
T Consensus 225 iNi~----T~l~~a~~~~~~ 240 (283)
T PRK08185 225 INIS----SDMKYAFFKKVR 240 (283)
T ss_pred EEeC----hHHHHHHHHHHH
Confidence 4222 355555555544
No 452
>PRK01362 putative translaldolase; Provisional
Probab=25.83 E-value=4.3e+02 Score=27.32 Aligned_cols=81 Identities=20% Similarity=0.124 Sum_probs=46.1
Q ss_pred HHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEE---eCCCCCCCHHHHHHHHhc---cCC-CcEEEEecCCChHHHHH
Q 006057 34 LRRCQYH--VTTTSQAITALKLLRENKNKFDLVIS---DVHMPDMDGFKLLELVGL---EMD-LPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 34 L~~~gy~--V~tasdg~EALelLre~k~~pDLVIl---Dv~MPdmDG~eLLe~Ir~---~~d-IPVIILSA~~d~e~v~k 104 (663)
|.+.|.. ++.+-+...|+.....+ .+.|-. -+.-.+.||+++++.+.. ... -.-|+..+......+.+
T Consensus 97 L~~~Gi~v~~T~vfs~~Qa~~Aa~aG---a~yispyvgRi~d~g~dg~~~i~~~~~~~~~~~~~tkilaAS~r~~~~v~~ 173 (214)
T PRK01362 97 LSKEGIKTNVTLIFSANQALLAAKAG---ATYVSPFVGRLDDIGTDGMELIEDIREIYDNYGFDTEIIAASVRHPMHVLE 173 (214)
T ss_pred HHHCCCceEEeeecCHHHHHHHHhcC---CcEEEeecchHhhcCCCHHHHHHHHHHHHHHcCCCcEEEEeecCCHHHHHH
Confidence 3444543 34455666666555543 232221 122246799999875532 222 23455666678888999
Q ss_pred HHhcCCceEEeCC
Q 006057 105 GITHGACDYLLKP 117 (663)
Q Consensus 105 Al~aGA~DYLlKP 117 (663)
+..+|++.+-+-|
T Consensus 174 ~~~~G~d~iTi~~ 186 (214)
T PRK01362 174 AALAGADIATIPY 186 (214)
T ss_pred HHHcCCCEEecCH
Confidence 9999998554443
No 453
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=25.83 E-value=1.9e+02 Score=30.80 Aligned_cols=95 Identities=11% Similarity=-0.052 Sum_probs=0.0
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSG 95 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA 95 (663)
++.++.+.......+++.+...-.....+.+.+++.+.+... +|+|.+|-.-| .+--++++.++..+.+| |+.++
T Consensus 160 Hi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~g---aD~I~ld~~~~-e~l~~~v~~i~~~~~i~-i~asG 234 (269)
T cd01568 160 HIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAG---ADIIMLDNMSP-EELKEAVKLLKGLPRVL-LEASG 234 (269)
T ss_pred HHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcC---CCEEEECCCCH-HHHHHHHHHhccCCCeE-EEEEC
Q ss_pred CCChHHHHHHHhcCCceEEe
Q 006057 96 NGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 96 ~~d~e~v~kAl~aGA~DYLl 115 (663)
--..+.+.+..+.||+.+-+
T Consensus 235 GIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 235 GITLENIRAYAETGVDVIST 254 (269)
T ss_pred CCCHHHHHHHHHcCCCEEEE
No 454
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=25.58 E-value=4.5e+02 Score=27.96 Aligned_cols=90 Identities=16% Similarity=0.063 Sum_probs=0.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhC-------CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 17 VLAVDDDPTCLLLLETLLRRC-------QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~-------gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
|||.|++-...-.+...+... .....++.+.++|++.+... +|.|.+|-.-| -++-+.++......
T Consensus 151 ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~~~g---aDyI~ld~~~~----e~lk~~v~~~~~~i 223 (265)
T TIGR00078 151 VMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAAEAG---ADIIMLDNMKP----EEIKEAVQLLKGRV 223 (265)
T ss_pred eeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHHHcC---CCEEEECCCCH----HHHHHHHHHhcCCC
Q ss_pred EEEEecCCChHHHHHHHhcCCceE
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DY 113 (663)
.|+.++--..+.+....+.||+.+
T Consensus 224 pi~AsGGI~~~ni~~~a~~Gvd~I 247 (265)
T TIGR00078 224 LLEASGGITLDNLEEYAETGVDVI 247 (265)
T ss_pred cEEEECCCCHHHHHHHHHcCCCEE
No 455
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=25.58 E-value=2.2e+02 Score=32.05 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=40.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EE-EEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY---HV-TTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy---~V-~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
-+|..||-++...+..++-++..++ .+ ....|..+.+..+......||+||+|-
T Consensus 244 ~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDP 301 (396)
T PRK15128 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999999998887765 23 345677777665543234799999984
No 456
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=25.53 E-value=5.8e+02 Score=28.57 Aligned_cols=60 Identities=15% Similarity=0.138 Sum_probs=43.0
Q ss_pred HHHHHHHhccC---CCcEEEEecCCChHHHHHHHhcCCceE------Ee-CCCCHHHHHHHHHHHHHhhc
Q 006057 76 FKLLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDY------LL-KPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 76 ~eLLe~Ir~~~---dIPVIILSA~~d~e~v~kAl~aGA~DY------Ll-KPvs~eeL~~~~q~Vlrr~~ 135 (663)
++.+..+++.. ++|||...+-.+.+.+.+.+.+||+.. +. -|--..+|..-+...+++..
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~~gp~ii~~I~~~L~~~l~~~g 308 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQYGFRIVEDMISGLSHYMDEKG 308 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheeeeeeccCCchhHHHHHHHHHHHHHHcC
Confidence 34445554432 799999999999999999999999863 33 35556777777777676654
No 457
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=25.35 E-value=5.3e+02 Score=25.78 Aligned_cols=83 Identities=14% Similarity=0.103 Sum_probs=39.3
Q ss_pred CCCCcEEEEEeCC-----HHHHHHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 11 FPSGLRVLAVDDD-----PTCLLLLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 11 FP~glRVLIVDDD-----~~~r~iL~~lL~~~gy~V~t--asdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
+|..-+|.++-++ ....+.+++.++..|+.+.. .....+..+.+......+|+|++--..--..-++.++...
T Consensus 128 ~~g~~~i~~l~~~~~~~~~~r~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~dai~~~~d~~a~~~~~~~~~~~ 207 (281)
T cd06325 128 LPDAKTVGVLYNPSEANSVVQVKELKKAAAKLGIEVVEATVSSSNDVQQAAQSLAGKVDAIYVPTDNTVASAMEAVVKVA 207 (281)
T ss_pred CCCCcEEEEEeCCCCccHHHHHHHHHHHHHhCCCEEEEEecCCHHHHHHHHHHhcccCCEEEEcCchhHHhHHHHHHHHH
Confidence 4555677776321 12335666777777776542 2333333334333222478888733211111222233333
Q ss_pred ccCCCcEEEE
Q 006057 84 LEMDLPVIML 93 (663)
Q Consensus 84 ~~~dIPVIIL 93 (663)
...++|||-+
T Consensus 208 ~~~~ipvig~ 217 (281)
T cd06325 208 NEAKIPVIAS 217 (281)
T ss_pred HHcCCCEEEc
Confidence 2346886644
No 458
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=25.33 E-value=6.3e+02 Score=27.49 Aligned_cols=86 Identities=20% Similarity=0.094 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEeCC------------CC-------------CCCH
Q 006057 26 CLLLLETLLRRCQYHVTT--T---SQAITALKLLRENKNKFDLVISDVH------------MP-------------DMDG 75 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~t--a---sdg~EALelLre~k~~pDLVIlDv~------------MP-------------dmDG 75 (663)
..+.|+.+.+.....|.. . ...++|..+.. . .+|.|.+.-+ -+ ....
T Consensus 166 ~~~~i~~l~~~~~vPVivK~~g~g~s~~~a~~l~~-~--Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t 242 (326)
T cd02811 166 WLERIEELVKALSVPVIVKEVGFGISRETAKRLAD-A--GVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPT 242 (326)
T ss_pred HHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHH-c--CCCEEEECCCCCCcccccccccccccccccccccccccccH
Confidence 447788888776654442 2 34555654443 2 5888886432 00 0111
Q ss_pred HHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 76 FKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 76 ~eLLe~Ir~~~-dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.+.+..++... ++|||.-.+-.....+.+++.+||+.+-
T Consensus 243 ~~~l~~~~~~~~~ipIiasGGIr~~~dv~kal~lGAd~V~ 282 (326)
T cd02811 243 AASLLEVRSALPDLPLIASGGIRNGLDIAKALALGADLVG 282 (326)
T ss_pred HHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 23444444333 7999999998999999999999998763
No 459
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.30 E-value=4.6e+02 Score=29.36 Aligned_cols=33 Identities=21% Similarity=0.112 Sum_probs=28.0
Q ss_pred ccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 84 LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 84 ~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
....+|||.=.+-.....+.+|+.+||+..++-
T Consensus 210 ~~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlG 242 (346)
T PRK05096 210 HGLGGQIVSDGGCTVPGDVAKAFGGGADFVMLG 242 (346)
T ss_pred HHcCCCEEecCCcccccHHHHHHHcCCCEEEeC
Confidence 456789998888888889999999999988764
No 460
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=25.23 E-value=1.6e+02 Score=29.61 Aligned_cols=74 Identities=20% Similarity=0.194 Sum_probs=42.6
Q ss_pred EEEEEeCC---------HHHHHHHHHHHH-hCCCEEEEECCHHHHHH-HHHhcCCCceEEEEeCCCCC-CCHHHHHHHHh
Q 006057 16 RVLAVDDD---------PTCLLLLETLLR-RCQYHVTTTSQAITALK-LLRENKNKFDLVISDVHMPD-MDGFKLLELVG 83 (663)
Q Consensus 16 RVLIVDDD---------~~~r~iL~~lL~-~~gy~V~tasdg~EALe-lLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir 83 (663)
||||+... +.....|+.+|+ ..+++|+...+....-. .| ..+|+||+....++ ++. +..+.++
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L----~~~Dvvv~~~~~~~~l~~-~~~~al~ 75 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL----KGYDVVVFYNTGGDELTD-EQRAALR 75 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH----CT-SEEEEE-SSCCGS-H-HHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh----cCCCEEEEECCCCCcCCH-HHHHHHH
Confidence 68888655 256778999998 67899998777433211 23 26999999877753 332 2222222
Q ss_pred --ccCCCcEEEEe
Q 006057 84 --LEMDLPVIMLS 94 (663)
Q Consensus 84 --~~~dIPVIILS 94 (663)
.+...++|.+=
T Consensus 76 ~~v~~Ggglv~lH 88 (217)
T PF06283_consen 76 DYVENGGGLVGLH 88 (217)
T ss_dssp HHHHTT-EEEEEG
T ss_pred HHHHcCCCEEEEc
Confidence 12456777763
No 461
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=25.18 E-value=3.9e+02 Score=28.46 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=59.1
Q ss_pred CCHHHHHHHHHHHHhCC-CEEE------EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEEE
Q 006057 22 DDPTCLLLLETLLRRCQ-YHVT------TTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 22 DD~~~r~iL~~lL~~~g-y~V~------tasdg~EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir~~~dIPVIIL 93 (663)
|.....+.++++++..+ ..++ .+.+..+|++.|.+. .++=||.-=.-+. .+|++.|+.+.....-.+||.
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l~~l--G~~rILTSGg~~~a~~g~~~L~~lv~~a~~~~Im~ 175 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQLADL--GVARILTSGQQQDAEQGLSLIMELIAASDGPIIMA 175 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHHHHc--CCCEEECCCCCCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 33566777788887653 4444 446888899988765 6888887655543 578888886644333245665
Q ss_pred ecCCChHHHHHHHhcCCceEE
Q 006057 94 SGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYL 114 (663)
.+--..+.+.+....|+..|-
T Consensus 176 GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 176 GAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred CCCCCHHHHHHHHHcCCCEEe
Confidence 555555556555567777665
No 462
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=25.18 E-value=6.5e+02 Score=25.65 Aligned_cols=92 Identities=10% Similarity=0.016 Sum_probs=50.5
Q ss_pred HHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE-EEecCCChHHHHHHHhcCC
Q 006057 33 LLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI-MLSGNGDPKLVMKGITHGA 110 (663)
Q Consensus 33 lL~~~gy-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI-ILSA~~d~e~v~kAl~aGA 110 (663)
.|+..+. -|....+.+++++.++.-- .--+=++.+.+-..++++.++.++.....+++ -.-.--..+.+..|+++||
T Consensus 6 ~l~~~~~~~v~r~~~~~~~~~~~~a~~-~gGi~~iEvt~~~~~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA 84 (206)
T PRK09140 6 PFTKLPLIAILRGITPDEALAHVGALI-EAGFRAIEIPLNSPDPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGG 84 (206)
T ss_pred HHHhCCEEEEEeCCCHHHHHHHHHHHH-HCCCCEEEEeCCCccHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCC
Confidence 3444443 3444555666655444310 11233556666666788888877655443433 2223345678899999999
Q ss_pred ceEEeCCCCHHHHHHH
Q 006057 111 CDYLLKPVRIEELKNI 126 (663)
Q Consensus 111 ~DYLlKPvs~eeL~~~ 126 (663)
+. +.-|....++...
T Consensus 85 ~f-ivsp~~~~~v~~~ 99 (206)
T PRK09140 85 RL-IVTPNTDPEVIRR 99 (206)
T ss_pred CE-EECCCCCHHHHHH
Confidence 54 4456544455443
No 463
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=25.10 E-value=1.6e+02 Score=31.48 Aligned_cols=64 Identities=17% Similarity=0.186 Sum_probs=41.1
Q ss_pred HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCC
Q 006057 53 LLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR 119 (663)
Q Consensus 53 lLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs 119 (663)
++.+. .||+||+=---|..-|-.-.+.+-...++|.|+++...... ...+++..-.+||+-+.+
T Consensus 54 ~~~~~--~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p~~k-~kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 54 MLKEW--DPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAPTKK-AKDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HHHHH----SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGGGGG-GHHHHHHTT-EEEEETTS
T ss_pred HHHhh--CCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCCchh-hHHHHHhcCCcEEEEecC
Confidence 34454 68988886555666777777766666889999999755544 467777777888776655
No 464
>PRK10060 RNase II stability modulator; Provisional
Probab=25.04 E-value=5.9e+02 Score=30.24 Aligned_cols=99 Identities=15% Similarity=0.157 Sum_probs=66.0
Q ss_pred HHHHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHH---hccCCCcEEEEecCC
Q 006057 28 LLLETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHM----P-DMDGFKLLELV---GLEMDLPVIMLSGNG 97 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~t--asdg~EALelLre~k~~pDLVIlDv~M----P-dmDG~eLLe~I---r~~~dIPVIILSA~~ 97 (663)
..+-..|+..|+.+.. +..+...+..|..- .+|.|=+|-.+ . +.....+++.+ .+..++.||+ .+-.
T Consensus 544 ~~~l~~L~~~G~~ialDdfGtg~ssl~~L~~l--~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~viA-eGVE 620 (663)
T PRK10060 544 LSVIQQFSQLGAQVHLDDFGTGYSSLSQLARF--PIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQVIA-EGVE 620 (663)
T ss_pred HHHHHHHHHCCCEEEEECCCCchhhHHHHHhC--CCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCcEEE-ecCC
Confidence 3445566777888764 56777788888764 68999988532 2 23344555533 3345677764 4555
Q ss_pred ChHHHHHHHhcCCce----EEeCCCCHHHHHHHHHH
Q 006057 98 DPKLVMKGITHGACD----YLLKPVRIEELKNIWQH 129 (663)
Q Consensus 98 d~e~v~kAl~aGA~D----YLlKPvs~eeL~~~~q~ 129 (663)
..+....+...|++. |+.||...+++...++.
T Consensus 621 t~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 621 TAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred CHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 566677777888863 68899999998776644
No 465
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=25.04 E-value=3.5e+02 Score=29.58 Aligned_cols=63 Identities=21% Similarity=0.169 Sum_probs=38.9
Q ss_pred cEEEEEeCCHH-HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006057 15 LRVLAVDDDPT-CLLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 15 lRVLIVDDD~~-~r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
-|+|||-|... ....+...|+..+..+..+. ..+++.+.+++. ++|+||- +.+..-+++.+.+
T Consensus 24 ~~~livtd~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGs~~D~aK~i 96 (367)
T cd08182 24 KRVLLVTGPRSAIASGLTDILKPLGTLVVVFDDVQPNPDLEDLAAGIRLLREF--GPDAVLA---VGGGSVLDTAKAL 96 (367)
T ss_pred CeEEEEeCchHHHHHHHHHHHHHcCCeEEEEcCcCCCcCHHHHHHHHHHHHhc--CcCEEEE---eCCcHHHHHHHHH
Confidence 47888876644 45667777877776554432 244566666653 6888864 4565666665544
No 466
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=24.98 E-value=5.6e+02 Score=27.60 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=58.2
Q ss_pred cEEEEEeC-CHHHH---HHHHHHHHhCCCEEEEECCHHHHHHH----HHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--
Q 006057 15 LRVLAVDD-DPTCL---LLLETLLRRCQYHVTTTSQAITALKL----LRENKNKFDLVISDVHMPDMDGFKLLELVGL-- 84 (663)
Q Consensus 15 lRVLIVDD-D~~~r---~iL~~lL~~~gy~V~tasdg~EALel----Lre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-- 84 (663)
.+|.|+-. .+... ..+...|++.+.++.........+.. ..+....+|+||+ -+.||- +|+..+.
T Consensus 11 ~~i~ii~~~~~~~~~~~~~i~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~Dlvi~----iGGDGT-~L~aa~~~~ 85 (287)
T PRK14077 11 KKIGLVTRPNVSLDKEILKLQKILSIYKVEILLEKESAEILDLPGYGLDELFKISDFLIS----LGGDGT-LISLCRKAA 85 (287)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHHCCCEEEEecchhhhhcccccchhhcccCCCEEEE----ECCCHH-HHHHHHHhc
Confidence 35777732 23333 34445555667777764432222210 0111124788886 477883 4444432
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
..++||+-+. .|-.+||. .++++++..++..++++.
T Consensus 86 ~~~~PilGIN-------------~G~lGFLt-~~~~~~~~~~l~~i~~g~ 121 (287)
T PRK14077 86 EYDKFVLGIH-------------AGHLGFLT-DITVDEAEKFFQAFFQGE 121 (287)
T ss_pred CCCCcEEEEe-------------CCCcccCC-cCCHHHHHHHHHHHHcCC
Confidence 3478988654 35667765 578899999999988654
No 467
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=24.96 E-value=1.8e+02 Score=29.16 Aligned_cols=44 Identities=14% Similarity=0.164 Sum_probs=33.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIl 66 (663)
|+|+|||--.-....+...|++.++++..+.+.++ + ..+|.||+
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~----~----~~~d~iIl 44 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV----I----LAADKLFL 44 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH----h----CCCCEEEE
Confidence 68999997766777788899999999998887643 2 14687775
No 468
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=24.85 E-value=5.3e+02 Score=27.68 Aligned_cols=81 Identities=20% Similarity=0.231 Sum_probs=49.0
Q ss_pred hCCCEEEEECCH-----HHH---HH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHH
Q 006057 36 RCQYHVTTTSQA-----ITA---LK-LLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGI 106 (663)
Q Consensus 36 ~~gy~V~tasdg-----~EA---Le-lLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl 106 (663)
+.+..|..+.++ +++ .. ++.+. .||+||+=---|..-|-.-.+.+-...++|.|+++........ .++
T Consensus 29 RedI~vrv~gsGaKm~pe~~~~~~~~~~~~~--~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~-d~l 105 (277)
T PRK00994 29 REDIDVRVVGSGAKMGPEEVEEVVKKMLEEW--KPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVK-DAM 105 (277)
T ss_pred ccCceEEEeccCCCCCHHHHHHHHHHHHHhh--CCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchH-HHH
Confidence 345666655533 222 22 33443 6898887544444555555665555678899999976665544 667
Q ss_pred hcCCceEEeCCCC
Q 006057 107 THGACDYLLKPVR 119 (663)
Q Consensus 107 ~aGA~DYLlKPvs 119 (663)
+..-.+||+-+.+
T Consensus 106 ~~~g~GYIivk~D 118 (277)
T PRK00994 106 EEQGLGYIIVKAD 118 (277)
T ss_pred HhcCCcEEEEecC
Confidence 6666777665544
No 469
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=24.81 E-value=6.8e+02 Score=24.69 Aligned_cols=50 Identities=14% Similarity=0.280 Sum_probs=34.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy-~V~-tasdg~EALelLre~k~~pDLVIlDv 68 (663)
+.+|..||-++...+.+++.+++.+. .+. ...+..+ + .. ...+|+|+++.
T Consensus 66 ~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~-~--~~--~~~fD~I~s~~ 117 (181)
T TIGR00138 66 ELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAED-F--QH--EEQFDVITSRA 117 (181)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhh-c--cc--cCCccEEEehh
Confidence 35799999999888888888877665 243 3345444 2 11 24799999976
No 470
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=24.79 E-value=1.2e+02 Score=33.44 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=48.3
Q ss_pred CHHHHHHHHH-hcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCce
Q 006057 46 QAITALKLLR-ENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD 112 (663)
Q Consensus 46 dg~EALelLr-e~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~D 112 (663)
+..||++... ...+.-|+|++- |.+--+++++.++...++||.+.--.++...+..|.+.|..|
T Consensus 227 n~~eAlre~~~D~~EGAD~lMVK---Pal~YLDIi~~~k~~~~lPvaaYqVSGEYaMikaAa~~G~~d 291 (322)
T PRK13384 227 NGRQALLEALLDEAEGADILMVK---PGTPYLDVLSRLRQETHLPLAAYQVGGEYAMIKFAALAGALD 291 (322)
T ss_pred CHHHHHHHHHhhHhhCCCEEEEc---CCchHHHHHHHHHhccCCCEEEEEchHHHHHHHHHHHcCCcc
Confidence 5567766443 333468998874 777778889999888899999987777777777888888665
No 471
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=24.63 E-value=3.1e+02 Score=28.71 Aligned_cols=94 Identities=15% Similarity=0.172 Sum_probs=50.6
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CH--HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChH
Q 006057 26 CLLLLETLLRRCQYHVTTTS---QA--ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPK 100 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~tas---dg--~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e 100 (663)
+...++..+++.||.+..+. +. +++++.+.++ .+|=||+--. ..+ .+-++.+... ++|||++....+..
T Consensus 19 ii~gIe~~a~~~Gy~l~l~~t~~~~~~e~~i~~l~~~--~vDGiI~~s~--~~~-~~~l~~~~~~-~iPvV~~~~~~~~~ 92 (279)
T PF00532_consen 19 IIRGIEQEAREHGYQLLLCNTGDDEEKEEYIELLLQR--RVDGIILASS--END-DEELRRLIKS-GIPVVLIDRYIDNP 92 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEEETTTHHHHHHHHHHHHT--TSSEEEEESS--SCT-CHHHHHHHHT-TSEEEEESS-SCTT
T ss_pred HHHHHHHHHHHcCCEEEEecCCCchHHHHHHHHHHhc--CCCEEEEecc--cCC-hHHHHHHHHc-CCCEEEEEeccCCc
Confidence 44556777778899876443 22 2567777765 6886665422 223 3334434333 89999887653321
Q ss_pred HHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 101 LVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 101 ~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
.+..-+..- +.+--..+.++++++.
T Consensus 93 -------~~~~~V~~D--~~~a~~~a~~~Li~~G 117 (279)
T PF00532_consen 93 -------EGVPSVYID--NYEAGYEATEYLIKKG 117 (279)
T ss_dssp -------CTSCEEEEE--HHHHHHHHHHHHHHTT
T ss_pred -------ccCCEEEEc--chHHHHHHHHHHHhcc
Confidence 112222221 4455556667766543
No 472
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=24.45 E-value=6.3e+02 Score=28.07 Aligned_cols=65 Identities=15% Similarity=0.279 Sum_probs=42.9
Q ss_pred eEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 62 DLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 62 DLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|++++--. -+.-|+.+++.+. ..+|||+-.. .. ..+.+..|..+|+..|-++++|..++..++..
T Consensus 342 Dv~v~pS~-~E~fg~~~lEAma--~G~PvV~s~~-gg---~~eiv~~~~~G~lv~~~d~~~la~~i~~ll~~ 406 (439)
T TIGR02472 342 GIFVNPAL-TEPFGLTLLEAAA--CGLPIVATDD-GG---PRDIIANCRNGLLVDVLDLEAIASALEDALSD 406 (439)
T ss_pred CEEecccc-cCCcccHHHHHHH--hCCCEEEeCC-CC---cHHHhcCCCcEEEeCCCCHHHHHHHHHHHHhC
Confidence 66654221 1333566666553 4578875433 32 33455678899999999999999999888753
No 473
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.45 E-value=4.1e+02 Score=26.23 Aligned_cols=62 Identities=21% Similarity=0.116 Sum_probs=35.4
Q ss_pred HHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 26 CLLLLETLLRRCQYHVTTTSQ---A---ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~tasd---g---~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
....+++.++..||.+..+.. . .++++.+... .+|.||+.-..+... +.+.+ ...+|||++.
T Consensus 17 ~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~vdgiii~~~~~~~~---~~~~~--~~~ipvv~~~ 84 (267)
T cd06284 17 ILKGIEDEAREAGYGVLLGDTRSDPEREQEYLDLLRRK--QADGIILLDGSLPPT---ALTAL--AKLPPIVQAC 84 (267)
T ss_pred HHHHHHHHHHHcCCeEEEecCCCChHHHHHHHHHHHHc--CCCEEEEecCCCCHH---HHHHH--hcCCCEEEEe
Confidence 456777888888998875542 2 2334444433 689777633222211 33333 2378999875
No 474
>PRK00955 hypothetical protein; Provisional
Probab=24.44 E-value=4.4e+02 Score=31.72 Aligned_cols=110 Identities=14% Similarity=0.108 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhCCCEEEEECCHHH-HHHHHHhcCCCceEEEE----------------------eCCCCCC-----
Q 006057 22 DDPTCLLLLETLLRRCQYHVTTTSQAIT-ALKLLRENKNKFDLVIS----------------------DVHMPDM----- 73 (663)
Q Consensus 22 DD~~~r~iL~~lL~~~gy~V~tasdg~E-ALelLre~k~~pDLVIl----------------------Dv~MPdm----- 73 (663)
..+.-..+|.++|+..||.|.......- ..+.+.. -.+|.|++. |..-|+.
T Consensus 27 hp~fg~a~i~r~L~~~G~~v~ii~qp~~~~~~~~~~-~g~P~l~~~vs~g~~dsmv~~yt~~~~~r~~d~ytpgg~~~~r 105 (620)
T PRK00955 27 HPSFGTAIIGRVLEAEGFRVGIIAQPNWRDLEDFKK-LGKPRLFFLVSAGNMDSMVNHYTASKKLRSKDAYSPGGKMGLR 105 (620)
T ss_pred CCccHHHHHHHHHHHCCCEEEEecCCCcCChHHHHh-hCCCcEEEEeccccHHHHHhhcchhhhcccccccCCCCccCCC
Confidence 3345678899999999999987654311 1122221 136888774 2222322
Q ss_pred ---CHHHHHHHHhc-cCCCcEEEEecCCChH----------HHHH-HHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 74 ---DGFKLLELVGL-EMDLPVIMLSGNGDPK----------LVMK-GITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 74 ---DG~eLLe~Ir~-~~dIPVIILSA~~d~e----------~v~k-Al~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.-+.+++.+++ .+++|||+=..+.... .+++ .+.....|||+.--....|.++++++..
T Consensus 106 pdra~i~y~~~ik~~~p~~~IvlGG~eaS~rr~~hyd~w~~~~~~siL~d~~aD~vv~GeGE~t~~eL~~~L~~ 179 (620)
T PRK00955 106 PDRATIVYCNKIKEAYPDVPIIIGGIEASLRRFAHYDYWSDKVRRSILIDSGADLLVYGMGEKPIVEIARRLKA 179 (620)
T ss_pred cchHHHHHHHHHHHHCCCCcEEeCChhhhccccccchhhhhhhhHHHhhccCCCEEEECCcHHHHHHHHHHHHc
Confidence 23445666654 5789888644333221 1122 2333345999999999888888877543
No 475
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=24.44 E-value=4.8e+02 Score=25.87 Aligned_cols=65 Identities=14% Similarity=0.103 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhCCCEEEEECC---H---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEec
Q 006057 25 TCLLLLETLLRRCQYHVTTTSQ---A---ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSG 95 (663)
Q Consensus 25 ~~r~iL~~lL~~~gy~V~tasd---g---~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA 95 (663)
.....++..+++.||.+..... . .++++.+... .+|.||+....++ . ..++.+. ..++|||++-.
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l~~~--~~dgiii~~~~~~--~-~~~~~~~-~~~ipvV~i~~ 86 (270)
T cd06296 16 EVLRGVEEAAAAAGYDVVLSESGRRTSPERQWVERLSAR--RTDGVILVTPELT--S-AQRAALR-RTGIPFVVVDP 86 (270)
T ss_pred HHHHHHHHHHHHcCCeEEEecCCCchHHHHHHHHHHHHc--CCCEEEEecCCCC--h-HHHHHHh-cCCCCEEEEec
Confidence 3455677778888998775432 2 2345555553 6898776543333 2 3344442 35789998854
No 476
>PRK15454 ethanol dehydrogenase EutG; Provisional
Probab=24.43 E-value=3.2e+02 Score=30.58 Aligned_cols=63 Identities=19% Similarity=0.072 Sum_probs=32.3
Q ss_pred cEEEEEeCCHHH----HHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 006057 15 LRVLAVDDDPTC----LLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (663)
Q Consensus 15 lRVLIVDDD~~~----r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~ 81 (663)
-++|||-|.... .+.+...|+..|..+..+. ..+++.+.+++. ++|+||- +.+..-++..+.
T Consensus 50 ~~~lvv~~~~~~~~g~~~~v~~~L~~~gi~~~~~~~v~~~P~~~~v~~~~~~~r~~--~~D~Iia---vGGGS~iD~AKa 124 (395)
T PRK15454 50 KHLFVMADSFLHQAGMTAGLTRSLAVKGIAMTLWPCPVGEPCITDVCAAVAQLRES--GCDGVIA---FGGGSVLDAAKA 124 (395)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEECCCCCCcCHHHHHHHHHHHHhc--CcCEEEE---eCChHHHHHHHH
Confidence 356666554221 2345666666665544331 234555556543 5777764 445555555544
Q ss_pred H
Q 006057 82 V 82 (663)
Q Consensus 82 I 82 (663)
+
T Consensus 125 i 125 (395)
T PRK15454 125 V 125 (395)
T ss_pred H
Confidence 3
No 477
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=24.43 E-value=4.1e+02 Score=27.80 Aligned_cols=68 Identities=18% Similarity=0.285 Sum_probs=46.8
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCC-CC--HHHHHHHHhccCCCcEEEEecCCChHHHHHHH-hcCCceEEe
Q 006057 47 AITALKLLRENKNKFDLVISDVHMPD-MD--GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGI-THGACDYLL 115 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~MPd-mD--G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl-~aGA~DYLl 115 (663)
..+..+.+.+. ..-.+++.|+.--+ +. -+++++.++....+|||.-.+-.+.+.+.+++ ..|+++.+.
T Consensus 154 ~~e~~~~~~~~-g~~~ii~~~i~~~G~~~G~d~~~i~~~~~~~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 154 PLELAKEYEAL-GAGEILLNSIDRDGTMKGYDLELLKSFRNALKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred HHHHHHHHHHc-CCCEEEEEccCCCCCcCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 45555555543 12347777775422 22 36677878777889999988888999999998 789887543
No 478
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=24.43 E-value=1.1e+02 Score=26.46 Aligned_cols=8 Identities=38% Similarity=0.825 Sum_probs=5.6
Q ss_pred ceEEEEeC
Q 006057 61 FDLVISDV 68 (663)
Q Consensus 61 pDLVIlDv 68 (663)
+|+||+|.
T Consensus 40 ~d~viiD~ 47 (104)
T cd02042 40 YDYIIIDT 47 (104)
T ss_pred CCEEEEeC
Confidence 67777775
No 479
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=24.38 E-value=4.7e+02 Score=29.91 Aligned_cols=81 Identities=19% Similarity=0.132 Sum_probs=56.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHH--HHHHHHhccCCCc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGF--KLLELVGLEMDLP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~-V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~--eLLe~Ir~~~dIP 89 (663)
..+|.-||=.+...+..++-.+..+.. +. .+.++++......+ ...||+||+| |...|. ++++.|.+.....
T Consensus 315 ~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~-~~~~d~VvvD---PPR~G~~~~~lk~l~~~~p~~ 390 (432)
T COG2265 315 VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWE-GYKPDVVVVD---PPRAGADREVLKQLAKLKPKR 390 (432)
T ss_pred CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccc-cCCCCEEEEC---CCCCCCCHHHHHHHHhcCCCc
Confidence 468999999888888877777776653 44 55677776655542 2479999999 555554 4778776666667
Q ss_pred EEEEecCCC
Q 006057 90 VIMLSGNGD 98 (663)
Q Consensus 90 VIILSA~~d 98 (663)
||.+|-+..
T Consensus 391 IvYVSCNP~ 399 (432)
T COG2265 391 IVYVSCNPA 399 (432)
T ss_pred EEEEeCCHH
Confidence 777776544
No 480
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=24.30 E-value=6.7e+02 Score=27.66 Aligned_cols=105 Identities=20% Similarity=0.216 Sum_probs=64.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCC----CHHHHHHHHhcc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTS---QAITALKLLRENKNKFDLVISDVHMPDM----DGFKLLELVGLE 85 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~-V~tas---dg~EALelLre~k~~pDLVIlDv~MPdm----DG~eLLe~Ir~~ 85 (663)
.++++||.+-+ .+..+++.++..+.. ++... ..++...++.. .|+.++ . .+.. =+..+++.+.
T Consensus 269 ~i~l~ivG~G~-~~~~l~~~~~~~~l~~~~~~~g~~~~~~~~~~l~~----aDv~v~-~-~~~~~~~~~p~~~~Eama-- 339 (415)
T cd03816 269 KLLCIITGKGP-LKEKYLERIKELKLKKVTIRTPWLSAEDYPKLLAS----ADLGVS-L-HTSSSGLDLPMKVVDMFG-- 339 (415)
T ss_pred CEEEEEEecCc-cHHHHHHHHHHcCCCcEEEEcCcCCHHHHHHHHHh----CCEEEE-c-cccccccCCcHHHHHHHH--
Confidence 46778887665 356777777776642 44332 34555555543 577664 1 1111 1445555543
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
..+|||. +... ...+.++.|.++++.. +.++|.+++..++..
T Consensus 340 ~G~PVI~-s~~~---~~~eiv~~~~~G~lv~--d~~~la~~i~~ll~~ 381 (415)
T cd03816 340 CGLPVCA-LDFK---CIDELVKHGENGLVFG--DSEELAEQLIDLLSN 381 (415)
T ss_pred cCCCEEE-eCCC---CHHHHhcCCCCEEEEC--CHHHHHHHHHHHHhc
Confidence 5689986 3333 3445677888999984 899999999888764
No 481
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=24.27 E-value=3.7e+02 Score=29.63 Aligned_cols=69 Identities=26% Similarity=0.268 Sum_probs=51.4
Q ss_pred EEECCHHHHHHHHHhcCCCceEEEEeCCC-----C----CCCHHHHHHHHhccCC-CcEEEEecCCChHHHHHHHhcCCc
Q 006057 42 TTTSQAITALKLLRENKNKFDLVISDVHM-----P----DMDGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGAC 111 (663)
Q Consensus 42 ~tasdg~EALelLre~k~~pDLVIlDv~M-----P----dmDG~eLLe~Ir~~~d-IPVIILSA~~d~e~v~kAl~aGA~ 111 (663)
..+.+..+|.++.+- ..|.||+.-.- . ....+.|+..+....+ +|||.--+-.+...+..|+..||+
T Consensus 132 ~~v~~~~~A~~~~~~---G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~iPViAAGGI~dg~~i~AAlalGA~ 208 (336)
T COG2070 132 HSVITVREALKAERA---GADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDGIPVIAAGGIADGRGIAAALALGAD 208 (336)
T ss_pred EEeCCHHHHHHHHhC---CCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcCCCEEEecCccChHHHHHHHHhccH
Confidence 356677777776653 46777775431 1 3344778888887777 999999999999999999999998
Q ss_pred eE
Q 006057 112 DY 113 (663)
Q Consensus 112 DY 113 (663)
+.
T Consensus 209 gV 210 (336)
T COG2070 209 GV 210 (336)
T ss_pred HH
Confidence 74
No 482
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=24.26 E-value=4.9e+02 Score=28.84 Aligned_cols=94 Identities=15% Similarity=0.044 Sum_probs=43.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHH--HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAI--TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~--EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPV 90 (663)
|..|.+||.++...+.++. ..++.+... ++. +.++.+ .-..+|+||+-..-.+ ....++...+.. +...+
T Consensus 23 g~~v~vid~~~~~~~~~~~---~~~~~~~~g-d~~~~~~l~~~--~~~~a~~vi~~~~~~~-~n~~~~~~~r~~~~~~~i 95 (453)
T PRK09496 23 NNDVTVIDTDEERLRRLQD---RLDVRTVVG-NGSSPDVLREA--GAEDADLLIAVTDSDE-TNMVACQIAKSLFGAPTT 95 (453)
T ss_pred CCcEEEEECCHHHHHHHHh---hcCEEEEEe-CCCCHHHHHHc--CCCcCCEEEEecCChH-HHHHHHHHHHHhcCCCeE
Confidence 5567777766654433332 234444432 222 122222 1235777777543211 222233444443 66677
Q ss_pred EEEecCCChHHHHHH---HhcCCceEE
Q 006057 91 IMLSGNGDPKLVMKG---ITHGACDYL 114 (663)
Q Consensus 91 IILSA~~d~e~v~kA---l~aGA~DYL 114 (663)
|+.+...+.....+. .+.||+..+
T Consensus 96 i~~~~~~~~~~~~~l~~~~~~G~~~vi 122 (453)
T PRK09496 96 IARVRNPEYAEYDKLFSKEALGIDLLI 122 (453)
T ss_pred EEEECCccccchhhhhhhhcCCccEEE
Confidence 776654443112222 456877554
No 483
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=24.19 E-value=2.6e+02 Score=26.71 Aligned_cols=53 Identities=28% Similarity=0.356 Sum_probs=28.7
Q ss_pred CcEEEEEeCCHHHHH---HHHHHHHhCCCEEEEEC---CHHHH----HHHHHhcCCCceEEEEeC
Q 006057 14 GLRVLAVDDDPTCLL---LLETLLRRCQYHVTTTS---QAITA----LKLLRENKNKFDLVISDV 68 (663)
Q Consensus 14 glRVLIVDDD~~~r~---iL~~lL~~~gy~V~tas---dg~EA----LelLre~k~~pDLVIlDv 68 (663)
+.+|++||.|..... .+....+..+..+.... +..+. +..+.. ..+|+||+|.
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~viiDt 90 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHARE--ENFDVVIVDT 90 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 678999998853222 23333344455554432 33322 222222 3689999887
No 484
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=24.15 E-value=4e+02 Score=26.51 Aligned_cols=51 Identities=22% Similarity=0.265 Sum_probs=30.3
Q ss_pred CceEEEEeCCCCCC---C----HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC-CceE
Q 006057 60 KFDLVISDVHMPDM---D----GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG-ACDY 113 (663)
Q Consensus 60 ~pDLVIlDv~MPdm---D----G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aG-A~DY 113 (663)
..|.+|+|..-++. + ++++++.+. ..+|+++..+- ..+.+.++++.| ++++
T Consensus 120 ~aD~il~dt~~~~~~Gg~g~~~~~~~l~~~~--~~~PvilaGGI-~~~Nv~~~i~~~~~~gv 178 (203)
T cd00405 120 EVDAILLDSKSGGGGGGTGKTFDWSLLRGLA--SRKPVILAGGL-TPDNVAEAIRLVRPYGV 178 (203)
T ss_pred cCCEEEEcCCCCCCCCCCcceEChHHhhccc--cCCCEEEECCC-ChHHHHHHHHhcCCCEE
Confidence 56888888865432 2 345555443 46787765544 556666777666 5443
No 485
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=24.13 E-value=3.7e+02 Score=28.20 Aligned_cols=70 Identities=17% Similarity=0.173 Sum_probs=50.2
Q ss_pred CceEEEEeCCC--CCCCHHHHHHHHhccCCC-cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHH
Q 006057 60 KFDLVISDVHM--PDMDGFKLLELVGLEMDL-PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQH 129 (663)
Q Consensus 60 ~pDLVIlDv~M--PdmDG~eLLe~Ir~~~dI-PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~ 129 (663)
...+|.++.-- .+..-.++++.+++..++ ||++=.+-.+.+.+.+++.+||+..++--.-.++....++.
T Consensus 154 g~~~vYle~gs~~g~~~~~e~I~~v~~~~~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~d~~~~~~~ 226 (232)
T PRK04169 154 GMPIVYLEYGGGAGDPVPPEMVKAVKKALDITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEEDPKKTVKA 226 (232)
T ss_pred CCCeEEEECCCCCCCCCCHHHHHHHHHhcCCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhhCHHHHHHH
Confidence 45677777542 222337888888877666 99987778888899999999999999887555554433433
No 486
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=23.89 E-value=5.1e+02 Score=26.77 Aligned_cols=74 Identities=15% Similarity=0.157 Sum_probs=52.7
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMP---DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MP---dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
...+..+..+.+.+. ..=.+.|.|+.-- ...-+++++.++....+||++-.+-.+.+.+.+++..||+..++--
T Consensus 28 ~~~d~~~~a~~~~~~-G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt 104 (253)
T PRK02083 28 DAGDPVELAKRYNEE-GADELVFLDITASSEGRDTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINS 104 (253)
T ss_pred ecCCHHHHHHHHHHc-CCCEEEEEeCCcccccCcchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 344777766666543 2235777788642 2234667787877778999998888999999999999988876653
No 487
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=23.88 E-value=1.8e+02 Score=31.51 Aligned_cols=82 Identities=21% Similarity=0.232 Sum_probs=53.4
Q ss_pred CcEEEEEeCCHHHH--HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC--CCCCC-----CHHHHHHHHhc
Q 006057 14 GLRVLAVDDDPTCL--LLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV--HMPDM-----DGFKLLELVGL 84 (663)
Q Consensus 14 glRVLIVDDD~~~r--~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv--~MPdm-----DG~eLLe~Ir~ 84 (663)
..+|.++|-.|... ..+...|.+.|..++...+..-+.-+ . ...+|.||+.. .+.+. -|--.+..+.+
T Consensus 152 ~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m--~-~~~vd~VlvGAd~v~~nG~v~nk~GT~~lA~~Ak 228 (303)
T TIGR00524 152 RIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFM--Q-KGEIDAVIVGADRIARNGDVANKIGTYQLAVLAK 228 (303)
T ss_pred ceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHc--c-ccCCCEEEEcccEEecCCCEeEhhhHHHHHHHHH
Confidence 46788888777643 34567777788888887776555433 2 12589999844 34443 24455556666
Q ss_pred cCCCcEEEEecCCC
Q 006057 85 EMDLPVIMLSGNGD 98 (663)
Q Consensus 85 ~~dIPVIILSA~~d 98 (663)
...+||++++....
T Consensus 229 ~~~vPv~V~a~s~K 242 (303)
T TIGR00524 229 EFRIPFFVAAPLST 242 (303)
T ss_pred HhCCCEEEeccccc
Confidence 77899998876433
No 488
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=23.82 E-value=5e+02 Score=28.64 Aligned_cols=92 Identities=14% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHhCCCEEEEEC------CHHHHHHHHHhcCCCc-eEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEecCC
Q 006057 30 LETLLRRCQYHVTTTS------QAITALKLLRENKNKF-DLVISDVHM-----PDMDGFKLLELVGLEMDLPVIMLSGNG 97 (663)
Q Consensus 30 L~~lL~~~gy~V~tas------dg~EALelLre~k~~p-DLVIlDv~M-----PdmDG~eLLe~Ir~~~dIPVIILSA~~ 97 (663)
|-+.+.+.|-.|..-+ +...|++.+++....- +|+|+-+.. +..--+..+..+++..++||.+-.-..
T Consensus 125 LL~~~A~~gkPvilStGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f~~pVG~SdHt~ 204 (329)
T TIGR03569 125 LLKKIARFGKPVILSTGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAFDLPVGYSDHTL 204 (329)
T ss_pred HHHHHHhcCCcEEEECCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHhCCCEEECCCCc
Q ss_pred ChHHHHHHHhcCCceEEeCCCCHHH
Q 006057 98 DPKLVMKGITHGACDYLLKPVRIEE 122 (663)
Q Consensus 98 d~e~v~kAl~aGA~DYLlKPvs~ee 122 (663)
.......|+..||+ .|-|-+.++.
T Consensus 205 G~~~~~aAvalGA~-iIEkH~tldk 228 (329)
T TIGR03569 205 GIEAPIAAVALGAT-VIEKHFTLDK 228 (329)
T ss_pred cHHHHHHHHHcCCC-EEEeCCChhh
No 489
>PLN02316 synthase/transferase
Probab=23.77 E-value=6.1e+02 Score=32.44 Aligned_cols=70 Identities=7% Similarity=0.044 Sum_probs=39.9
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHH---------HhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKG---------ITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 61 pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kA---------l~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
.|++++-- +-+.=|+..++.+ ...+|+|+-..-.-.+.+... ...+..+|+..|.+++.|..+|.+++
T Consensus 920 ADiflmPS-~~EP~GLvqLEAM--a~GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~raL 996 (1036)
T PLN02316 920 ADFILVPS-IFEPCGLTQLTAM--RYGSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALNRAI 996 (1036)
T ss_pred CcEEEeCC-cccCccHHHHHHH--HcCCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHHHHH
Confidence 56666532 1222344444443 345566653222223333221 01247899999999999999998887
Q ss_pred Hh
Q 006057 132 RR 133 (663)
Q Consensus 132 rr 133 (663)
..
T Consensus 997 ~~ 998 (1036)
T PLN02316 997 SA 998 (1036)
T ss_pred hh
Confidence 53
No 490
>PRK10624 L-1,2-propanediol oxidoreductase; Provisional
Probab=23.71 E-value=3.6e+02 Score=29.86 Aligned_cols=63 Identities=10% Similarity=0.119 Sum_probs=35.4
Q ss_pred cEEEEEeCCHH----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHH
Q 006057 15 LRVLAVDDDPT----CLLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLEL 81 (663)
Q Consensus 15 lRVLIVDDD~~----~r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~ 81 (663)
-|||||-|... ..+.+...|++.+.++..+. ...++++.+++. ++|+||- +.+..-+++.+.
T Consensus 31 ~~~lvvtd~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---iGGGS~iD~aK~ 105 (382)
T PRK10624 31 KKALIVTDKTLVKCGVVAKVTDVLDAAGLAYEIYDGVKPNPTIEVVKEGVEVFKAS--GADYLIA---IGGGSPQDTCKA 105 (382)
T ss_pred CEEEEEeCcchhhCcchHHHHHHHHHCCCeEEEeCCCCCCcCHHHHHHHHHHHHhc--CCCEEEE---eCChHHHHHHHH
Confidence 47888866543 23346667776666554442 234555666653 5787763 345555555553
Q ss_pred H
Q 006057 82 V 82 (663)
Q Consensus 82 I 82 (663)
+
T Consensus 106 i 106 (382)
T PRK10624 106 I 106 (382)
T ss_pred H
Confidence 3
No 491
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=23.64 E-value=2.9e+02 Score=28.42 Aligned_cols=70 Identities=19% Similarity=0.247 Sum_probs=50.4
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH--HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 45 SQAITALKLLRENKNKFDLVISDVHMPD-MDG--FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 45 sdg~EALelLre~k~~pDLVIlDv~MPd-mDG--~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
-+..+.++.+.+. ..-.+|++|+.--+ +.| +++++.++...++|||+--+-...+.+.++...|+++.+.
T Consensus 147 ~~~~~~~~~~~~~-g~~~ii~tdi~~dGt~~G~d~~~~~~l~~~~~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 147 IDLEEFAKRLEEL-GAGEIILTDIDRDGTMQGPDLELLKQLAEAVNIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEHHHHHHHHHHT-T-SEEEEEETTTTTTSSS--HHHHHHHHHHHSSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred cCHHHHHHHHHhc-CCcEEEEeeccccCCcCCCCHHHHHHHHHHcCCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 3567777766654 24579999997653 334 5677777666699999988888999999999999988775
No 492
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.59 E-value=9e+02 Score=25.64 Aligned_cols=99 Identities=15% Similarity=0.101 Sum_probs=58.8
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHhcCCCceEEEE-eC-CCC------CCCHHHHHHHHhcc
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTT-TS--QAITALKLLRENKNKFDLVIS-DV-HMP------DMDGFKLLELVGLE 85 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~t-as--dg~EALelLre~k~~pDLVIl-Dv-~MP------dmDG~eLLe~Ir~~ 85 (663)
|+|.|=.....+.+...+++.|...+. +. ...+-++.+... ..+.|-+ .. ..- ..+..++++++++.
T Consensus 121 viipDLp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~--s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~ 198 (258)
T PRK13111 121 LIIPDLPPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASH--ASGFVYYVSRAGVTGARSADAADLAELVARLKAH 198 (258)
T ss_pred EEECCCCHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHh--CCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhc
Confidence 444444444555666666777765432 32 223444544443 2343322 22 101 12345688888887
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCC
Q 006057 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPv 118 (663)
.++||++=.+-...+.+.++... |++.++-..
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSa 230 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV-ADGVIVGSA 230 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh-CCEEEEcHH
Confidence 79999987777788888888875 999887763
No 493
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=23.57 E-value=6e+02 Score=26.28 Aligned_cols=100 Identities=15% Similarity=0.158 Sum_probs=57.1
Q ss_pred EEEEEeCCHHHHHHHHHHH---HhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC---CHHH----HHHHHhcc
Q 006057 16 RVLAVDDDPTCLLLLETLL---RRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM---DGFK----LLELVGLE 85 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL---~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdm---DG~e----LLe~Ir~~ 85 (663)
.|.+-.-+|..+..+..++ ...|+.+...+++.-..+.+. ..|.|.+|+..|.. ..++ .++.++..
T Consensus 75 ~V~lTGGEPll~~~l~~li~~l~~~g~~v~leTNGtl~~~~l~----~~d~v~vs~K~~~sg~~~~~~~~~~~ik~l~~~ 150 (238)
T TIGR03365 75 HVSLSGGNPALQKPLGELIDLGKAKGYRFALETQGSVWQDWFR----DLDDLTLSPKPPSSGMETDWQALDDCIERLDDG 150 (238)
T ss_pred eEEEeCCchhhhHhHHHHHHHHHHCCCCEEEECCCCCcHHHHh----hCCEEEEeCCCCCCCCCCcHHHHHHHHHHhhhc
Confidence 5777788998865555554 456888887777765444443 36788999998752 2233 23334322
Q ss_pred C--CCcEEEEecCCChHHHHHHHhcC-CceEEeCCCCH
Q 006057 86 M--DLPVIMLSGNGDPKLVMKGITHG-ACDYLLKPVRI 120 (663)
Q Consensus 86 ~--dIPVIILSA~~d~e~v~kAl~aG-A~DYLlKPvs~ 120 (663)
. .+.+| ++...+.+.+.+..... ..-++.-|...
T Consensus 151 ~~~~vK~V-v~~~~d~~~a~~~~~~~~~~~~~l~P~~~ 187 (238)
T TIGR03365 151 PQTSLKVV-VFDDADYAYAKEVHARYPDLPFYLQPGNH 187 (238)
T ss_pred CceEEEEE-ECCcccHHHHHHHHHhcCCCCEEECCCCC
Confidence 2 24444 34455555444433221 23467777664
No 494
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=23.46 E-value=4e+02 Score=30.08 Aligned_cols=85 Identities=19% Similarity=0.121 Sum_probs=57.8
Q ss_pred HHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEecCCC
Q 006057 28 LLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE--MDLPVIMLSGNGD 98 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~~--~dIPVIILSA~~d 98 (663)
+.|+.+-+..+..|+ .+-+.++|..++.. .+|.|++.-+=. ....++++..++.. .++|||+=.+-..
T Consensus 243 ~~i~~lr~~~~~pvivKgV~~~~dA~~a~~~---G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~ 319 (383)
T cd03332 243 EDLAFLREWTDLPIVLKGILHPDDARRAVEA---GVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRT 319 (383)
T ss_pred HHHHHHHHhcCCCEEEecCCCHHHHHHHHHC---CCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCc
Confidence 455555555444333 45688888887764 589888875421 12346666666432 3599998888888
Q ss_pred hHHHHHHHhcCCceEEe
Q 006057 99 PKLVMKGITHGACDYLL 115 (663)
Q Consensus 99 ~e~v~kAl~aGA~DYLl 115 (663)
-..+.+|+.+||+...+
T Consensus 320 G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 320 GADIMKALALGAKAVLI 336 (383)
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 88999999999988644
No 495
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=23.41 E-value=8.3e+02 Score=25.18 Aligned_cols=30 Identities=7% Similarity=-0.096 Sum_probs=21.9
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCC
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPV 118 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPv 118 (663)
.+|-+|.......+.+|.+.||++...-|+
T Consensus 111 ~iiG~s~~~s~~~a~~A~~~gaDYv~~Gpv 140 (221)
T PRK06512 111 MIVGFGNLRDRHGAMEIGELRPDYLFFGKL 140 (221)
T ss_pred CEEEecCCCCHHHHHHhhhcCCCEEEECCC
Confidence 466666556666677888899988878775
No 496
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=23.16 E-value=4.6e+02 Score=26.60 Aligned_cols=66 Identities=15% Similarity=0.253 Sum_probs=43.8
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCChHHHHH-HHhcCCceEEe
Q 006057 48 ITALKLLRENKNKFD-LVISDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMK-GITHGACDYLL 115 (663)
Q Consensus 48 ~EALelLre~k~~pD-LVIlDv~MPd---mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~k-Al~aGA~DYLl 115 (663)
.+..+.+.+. ..| +++.++.--+ .--+++++.++...++|||+..+-...+.+.+ +...||+..++
T Consensus 156 ~~~~~~~~~~--G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~~ipvia~GGi~s~~di~~~l~~~gadgV~v 226 (232)
T TIGR03572 156 VEWAREAEQL--GAGEILLNSIDRDGTMKGYDLELIKTVSDAVSIPVIALGGAGSLDDLVEVALEAGASAVAA 226 (232)
T ss_pred HHHHHHHHHc--CCCEEEEeCCCccCCcCCCCHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHHcCCCEEEE
Confidence 3444444433 456 5555642211 12277888887777899999888888888888 66789988764
No 497
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=23.11 E-value=8e+02 Score=25.59 Aligned_cols=93 Identities=12% Similarity=0.011 Sum_probs=49.7
Q ss_pred HHHHhCCC-EEEEECCHHHHHHHHHhc-CCCceEEEEeCCCCCCCHHHHHHHHhccC--CCc-E-EEEecCCChHHHHHH
Q 006057 32 TLLRRCQY-HVTTTSQAITALKLLREN-KNKFDLVISDVHMPDMDGFKLLELVGLEM--DLP-V-IMLSGNGDPKLVMKG 105 (663)
Q Consensus 32 ~lL~~~gy-~V~tasdg~EALelLre~-k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~--dIP-V-IILSA~~d~e~v~kA 105 (663)
..|.+.+. -|....+.++|++.++.- ...+. ++++.|-.-+.++.++.++... ..| + |-.-.--+.+.+..+
T Consensus 10 ~~l~~~~vi~Vvr~~~~~~a~~~~~al~~gGi~--~iEiT~~tp~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a 87 (222)
T PRK07114 10 TAMKATGMVPVFYHADVEVAKKVIKACYDGGAR--VFEFTNRGDFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALY 87 (222)
T ss_pred HHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCC--EEEEeCCCCcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHH
Confidence 33444342 345556666666554421 11233 4555555556777776664221 123 2 222334567788899
Q ss_pred HhcCCceEEeCCCCHHHHHHH
Q 006057 106 ITHGACDYLLKPVRIEELKNI 126 (663)
Q Consensus 106 l~aGA~DYLlKPvs~eeL~~~ 126 (663)
+++||...+..-++++-+..+
T Consensus 88 ~~aGA~FiVsP~~~~~v~~~~ 108 (222)
T PRK07114 88 IQLGANFIVTPLFNPDIAKVC 108 (222)
T ss_pred HHcCCCEEECCCCCHHHHHHH
Confidence 999987665555665554443
No 498
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=23.05 E-value=4.1e+02 Score=29.37 Aligned_cols=39 Identities=10% Similarity=0.157 Sum_probs=30.2
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
++.+++++...++|||+=.. ...+.+.++.++|++.+++
T Consensus 202 ~~~i~~l~~~~~~PvivKgv-~~~~dA~~a~~~G~d~I~v 240 (344)
T cd02922 202 WDDIKWLRKHTKLPIVLKGV-QTVEDAVLAAEYGVDGIVL 240 (344)
T ss_pred HHHHHHHHHhcCCcEEEEcC-CCHHHHHHHHHcCCCEEEE
Confidence 45667777777889987644 5678899999999998774
No 499
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=22.93 E-value=2.5e+02 Score=34.32 Aligned_cols=81 Identities=23% Similarity=0.270 Sum_probs=46.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhC---CCEEEEECC---HHHHHHHHHhcCCCceEEEEeC--CCCCC-CHHHHHH
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRC---QYHVTTTSQ---AITALKLLRENKNKFDLVISDV--HMPDM-DGFKLLE 80 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~---gy~V~tasd---g~EALelLre~k~~pDLVIlDv--~MPdm-DG~eLLe 80 (663)
+++..+||||||....+-..|..+|++. +..|.++.. ..+.+..+ ..||.||+-= .-|.. .-+.+++
T Consensus 1 ~~~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l----~~~D~VVIspGPG~p~~~~~~~i~~ 76 (742)
T TIGR01823 1 QQQQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELL----PLFDAIVVGPGPGNPNNAQDMGIIS 76 (742)
T ss_pred CCCCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhh----cCCCEEEECCCCCCccchhhhHHHH
Confidence 4677899999999977777777888775 244444322 12222222 2578777621 11211 1234555
Q ss_pred HHhcc---CCCcEEEEe
Q 006057 81 LVGLE---MDLPVIMLS 94 (663)
Q Consensus 81 ~Ir~~---~dIPVIILS 94 (663)
.+... ..+||+-+.
T Consensus 77 ~i~~~~~~~~iPvLGIC 93 (742)
T TIGR01823 77 ELWELANLDEVPVLGIC 93 (742)
T ss_pred HHHHhcccCCCcEEEEc
Confidence 44322 368998775
No 500
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=22.88 E-value=8.8e+02 Score=25.30 Aligned_cols=65 Identities=8% Similarity=-0.066 Sum_probs=34.6
Q ss_pred HHHHHHHHHhCCCEEEE---E----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEec
Q 006057 27 LLLLETLLRRCQYHVTT---T----SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSG 95 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~t---a----sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIILSA 95 (663)
...++..+++.|.+|+. + .+....+..++.. .+|+|++.. .+.+...+++.++. ....++++.+.
T Consensus 158 ~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l~~~--~~d~i~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~~ 230 (345)
T cd06338 158 AEGAREKAEAAGLEVVYDETYPPGTADLSPLISKAKAA--GPDAVVVAG--HFPDAVLLVRQMKELGYNPKALYMTV 230 (345)
T ss_pred HHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHHHhc--CCCEEEECC--cchhHHHHHHHHHHcCCCCCEEEEec
Confidence 44556666777777652 1 2334445555432 578887644 23355566665543 24455655443
Done!