Query 006057
Match_columns 663
No_of_seqs 369 out of 1884
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 14:49:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006057.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006057hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 99.9 2.8E-24 9.4E-29 199.7 15.9 120 12-133 10-133 (134)
2 1irz_A ARR10-B; helix-turn-hel 99.9 2.8E-25 9.7E-30 182.5 6.2 63 196-258 2-64 (64)
3 3f6p_A Transcriptional regulat 99.9 8.4E-21 2.9E-25 166.7 16.7 117 15-133 3-119 (120)
4 3gl9_A Response regulator; bet 99.9 1.1E-20 3.8E-25 166.7 17.3 116 15-132 3-121 (122)
5 3t6k_A Response regulator rece 99.9 2.1E-20 7.4E-25 167.8 18.1 121 14-136 4-127 (136)
6 2lpm_A Two-component response 99.8 8.8E-23 3E-27 187.4 -0.1 115 12-132 6-121 (123)
7 3hv2_A Response regulator/HD d 99.8 8.7E-20 3E-24 166.3 18.5 134 1-136 1-136 (153)
8 3m6m_D Sensory/regulatory prot 99.8 4.6E-20 1.6E-24 167.3 16.4 122 10-133 10-136 (143)
9 2r25_B Osmosensing histidine p 99.8 4.7E-20 1.6E-24 165.0 16.2 120 14-133 2-127 (133)
10 3h1g_A Chemotaxis protein CHEY 99.8 8.5E-20 2.9E-24 161.8 16.6 119 14-133 5-127 (129)
11 2pl1_A Transcriptional regulat 99.8 4.8E-19 1.6E-23 153.6 18.5 118 15-134 1-119 (121)
12 2a9o_A Response regulator; ess 99.8 3.2E-19 1.1E-23 154.0 17.2 117 15-133 2-118 (120)
13 3gt7_A Sensor protein; structu 99.8 2.9E-19 9.8E-24 163.7 17.7 120 14-135 7-129 (154)
14 1zgz_A Torcad operon transcrip 99.8 4.8E-19 1.6E-23 154.1 18.2 118 15-134 3-120 (122)
15 3crn_A Response regulator rece 99.8 3.9E-19 1.3E-23 158.2 17.5 121 14-136 3-124 (132)
16 1dbw_A Transcriptional regulat 99.8 5.6E-19 1.9E-23 155.3 17.7 119 14-134 3-122 (126)
17 3jte_A Response regulator rece 99.8 6E-19 2.1E-23 158.0 18.2 124 14-137 3-127 (143)
18 1xhf_A DYE resistance, aerobic 99.8 5.9E-19 2E-23 153.8 17.3 118 15-134 4-121 (123)
19 3rqi_A Response regulator prot 99.8 7.4E-20 2.5E-24 173.4 12.5 120 14-135 7-127 (184)
20 1srr_A SPO0F, sporulation resp 99.8 4.4E-19 1.5E-23 155.2 16.1 117 15-133 4-121 (124)
21 1jbe_A Chemotaxis protein CHEY 99.8 8.1E-19 2.8E-23 153.9 17.4 120 13-134 3-126 (128)
22 3mm4_A Histidine kinase homolo 99.8 3.9E-19 1.3E-23 172.5 16.9 124 11-136 58-199 (206)
23 3h5i_A Response regulator/sens 99.8 1.8E-19 6.1E-24 161.9 13.4 122 14-136 5-127 (140)
24 1zh2_A KDP operon transcriptio 99.8 5.8E-19 2E-23 152.7 16.1 118 15-134 2-119 (121)
25 2qzj_A Two-component response 99.8 5.6E-19 1.9E-23 158.6 16.6 119 14-134 4-122 (136)
26 3hdv_A Response regulator; PSI 99.8 9.4E-19 3.2E-23 155.4 17.3 123 13-136 6-130 (136)
27 3grc_A Sensor protein, kinase; 99.8 3.7E-19 1.3E-23 158.8 14.6 123 13-137 5-131 (140)
28 3lua_A Response regulator rece 99.8 1.7E-19 5.9E-24 161.3 12.3 122 14-136 4-130 (140)
29 1tmy_A CHEY protein, TMY; chem 99.8 8.5E-19 2.9E-23 152.1 16.3 116 14-131 2-119 (120)
30 1i3c_A Response regulator RCP1 99.8 1.1E-18 3.7E-23 158.7 17.7 122 13-134 7-138 (149)
31 3eod_A Protein HNR; response r 99.8 4.8E-19 1.6E-23 156.1 14.9 121 13-135 6-128 (130)
32 1mb3_A Cell division response 99.8 5.6E-19 1.9E-23 153.8 15.1 117 15-133 2-121 (124)
33 1p6q_A CHEY2; chemotaxis, sign 99.8 5E-19 1.7E-23 155.5 14.9 119 13-133 5-127 (129)
34 3r0j_A Possible two component 99.8 1E-18 3.5E-23 173.2 18.5 122 12-135 21-143 (250)
35 3ilh_A Two component response 99.8 1.3E-18 4.4E-23 155.3 16.9 123 13-135 8-141 (146)
36 3hdg_A Uncharacterized protein 99.8 7.3E-19 2.5E-23 156.3 15.2 121 14-136 7-128 (137)
37 3heb_A Response regulator rece 99.8 1.6E-18 5.5E-23 157.4 17.7 121 14-134 4-136 (152)
38 1k68_A Phytochrome response re 99.8 1.5E-18 5.1E-23 153.0 17.0 121 14-134 2-132 (140)
39 3b2n_A Uncharacterized protein 99.8 1.1E-18 3.7E-23 155.5 16.2 120 15-136 4-126 (133)
40 3kht_A Response regulator; PSI 99.8 1E-18 3.5E-23 157.0 16.0 120 14-135 5-130 (144)
41 3kto_A Response regulator rece 99.8 3.5E-19 1.2E-23 159.2 12.9 121 14-136 6-129 (136)
42 1mvo_A PHOP response regulator 99.8 1.4E-18 4.8E-23 153.9 16.6 120 14-135 3-123 (136)
43 4e7p_A Response regulator; DNA 99.8 1.2E-18 4.2E-23 158.2 16.6 126 10-137 16-144 (150)
44 3cfy_A Putative LUXO repressor 99.8 1.1E-18 3.8E-23 156.8 15.8 120 15-136 5-125 (137)
45 3cnb_A DNA-binding response re 99.8 2.4E-18 8.3E-23 153.0 17.8 122 13-136 7-133 (143)
46 3i42_A Response regulator rece 99.8 5.7E-19 2E-23 155.1 13.5 118 14-134 3-123 (127)
47 3f6c_A Positive transcription 99.8 4.3E-19 1.5E-23 156.9 12.7 121 15-137 2-124 (134)
48 1s8n_A Putative antiterminator 99.8 8.8E-19 3E-23 167.8 15.5 124 10-135 9-133 (205)
49 1dz3_A Stage 0 sporulation pro 99.8 1E-18 3.5E-23 154.4 14.7 118 15-134 3-124 (130)
50 3nhm_A Response regulator; pro 99.8 1.5E-18 5.1E-23 153.2 15.7 119 14-136 4-125 (133)
51 3n0r_A Response regulator; sig 99.8 1.6E-19 5.5E-24 185.9 10.9 118 14-135 160-279 (286)
52 2zay_A Response regulator rece 99.8 1.5E-18 5E-23 156.2 15.8 121 13-135 7-130 (147)
53 1k66_A Phytochrome response re 99.8 2.6E-18 8.8E-23 153.4 16.7 121 14-134 6-139 (149)
54 3hzh_A Chemotaxis response reg 99.8 1.6E-18 5.4E-23 159.3 15.7 119 14-132 36-156 (157)
55 3cg0_A Response regulator rece 99.8 2.7E-18 9.4E-23 152.4 16.7 122 13-136 8-131 (140)
56 4dad_A Putative pilus assembly 99.8 8.5E-19 2.9E-23 157.9 13.2 123 12-134 18-142 (146)
57 3c3m_A Response regulator rece 99.8 2.6E-18 8.8E-23 154.0 16.0 119 15-135 4-125 (138)
58 2jba_A Phosphate regulon trans 99.8 4.3E-19 1.5E-23 155.1 10.5 118 15-134 3-123 (127)
59 3eul_A Possible nitrate/nitrit 99.8 4.2E-18 1.4E-22 154.7 17.3 126 10-137 11-139 (152)
60 3luf_A Two-component system re 99.8 2.3E-18 7.8E-23 173.7 17.1 122 13-135 123-247 (259)
61 3q9s_A DNA-binding response re 99.8 1.5E-18 5E-23 173.4 15.4 120 14-135 37-156 (249)
62 3lte_A Response regulator; str 99.8 4.6E-18 1.6E-22 149.8 16.9 120 13-135 5-127 (132)
63 3n53_A Response regulator rece 99.8 8.4E-19 2.9E-23 156.8 12.1 122 14-138 3-127 (140)
64 3snk_A Response regulator CHEY 99.8 1.7E-19 5.9E-24 160.7 7.3 119 13-133 13-133 (135)
65 3cg4_A Response regulator rece 99.8 1.4E-18 4.9E-23 155.0 13.0 122 13-136 6-130 (142)
66 1dcf_A ETR1 protein; beta-alph 99.8 2.6E-18 9E-23 152.9 14.6 119 13-134 6-130 (136)
67 2rjn_A Response regulator rece 99.8 8.1E-18 2.8E-22 153.1 17.2 122 13-136 6-129 (154)
68 1kgs_A DRRD, DNA binding respo 99.8 5.7E-18 1.9E-22 163.4 16.4 120 14-135 2-122 (225)
69 2qr3_A Two-component system re 99.8 8.3E-18 2.8E-22 149.3 16.0 121 14-136 3-129 (140)
70 2ayx_A Sensor kinase protein R 99.8 4.1E-18 1.4E-22 170.9 15.7 121 13-135 128-249 (254)
71 1yio_A Response regulatory pro 99.8 3.2E-18 1.1E-22 163.6 14.1 120 14-135 4-124 (208)
72 3kcn_A Adenylate cyclase homol 99.8 9.5E-18 3.3E-22 152.5 16.5 121 14-136 4-126 (151)
73 1a04_A Nitrate/nitrite respons 99.8 8.8E-18 3E-22 161.7 17.1 121 13-135 4-127 (215)
74 2qxy_A Response regulator; reg 99.8 6.7E-18 2.3E-22 151.0 15.2 119 14-135 4-123 (142)
75 3a10_A Response regulator; pho 99.8 5.5E-18 1.9E-22 146.1 13.4 113 15-131 2-115 (116)
76 3dzd_A Transcriptional regulat 99.8 4E-18 1.4E-22 181.8 14.3 119 15-135 1-120 (368)
77 1qkk_A DCTD, C4-dicarboxylate 99.8 1.1E-17 3.8E-22 152.3 15.2 121 14-136 3-124 (155)
78 2qvg_A Two component response 99.8 1.6E-17 5.6E-22 148.3 15.9 120 14-133 7-135 (143)
79 2gkg_A Response regulator homo 99.8 1E-17 3.4E-22 145.3 14.1 116 15-133 6-125 (127)
80 3cz5_A Two-component response 99.8 1.4E-17 4.7E-22 151.4 15.2 122 14-137 5-129 (153)
81 2oqr_A Sensory transduction pr 99.7 9.3E-18 3.2E-22 162.8 14.3 118 15-134 5-122 (230)
82 2jk1_A HUPR, hydrogenase trans 99.7 2.7E-17 9.3E-22 147.2 16.2 118 15-135 2-121 (139)
83 1ys7_A Transcriptional regulat 99.7 9.6E-18 3.3E-22 162.7 14.2 120 14-135 7-127 (233)
84 3cu5_A Two component transcrip 99.7 6.2E-18 2.1E-22 152.6 11.9 118 15-134 3-124 (141)
85 2gwr_A DNA-binding response re 99.7 9.8E-18 3.4E-22 164.7 13.4 118 15-134 6-123 (238)
86 3eq2_A Probable two-component 99.7 8.8E-18 3E-22 178.0 13.5 119 14-134 5-125 (394)
87 1w25_A Stalked-cell differenti 99.7 3E-17 1E-21 176.5 17.0 119 15-135 2-123 (459)
88 2qsj_A DNA-binding response re 99.7 1.9E-17 6.4E-22 150.3 13.1 123 14-137 3-128 (154)
89 3c97_A Signal transduction his 99.7 1.8E-17 6.2E-22 148.5 12.5 119 14-137 10-134 (140)
90 2pln_A HP1043, response regula 99.7 6.9E-17 2.3E-21 143.9 16.1 119 10-134 14-134 (137)
91 1ny5_A Transcriptional regulat 99.7 3.3E-17 1.1E-21 175.5 16.4 119 15-135 1-120 (387)
92 2j48_A Two-component sensor ki 99.7 2.3E-17 8E-22 140.3 11.9 114 14-132 1-117 (119)
93 3kyj_B CHEY6 protein, putative 99.7 2.3E-17 7.8E-22 148.7 11.8 115 12-127 11-129 (145)
94 2qv0_A Protein MRKE; structura 99.7 1.3E-16 4.3E-21 142.8 16.4 119 13-135 8-129 (143)
95 3t8y_A CHEB, chemotaxis respon 99.7 8.3E-17 2.8E-21 149.4 15.4 118 14-133 25-155 (164)
96 2rdm_A Response regulator rece 99.7 1.8E-16 6.2E-21 139.3 16.7 119 14-135 5-125 (132)
97 3eqz_A Response regulator; str 99.7 1.5E-17 5.1E-22 146.4 9.5 119 14-135 3-127 (135)
98 3klo_A Transcriptional regulat 99.7 9.4E-18 3.2E-22 163.5 8.1 122 13-136 6-132 (225)
99 1p2f_A Response regulator; DRR 99.7 7.4E-17 2.5E-21 155.7 14.2 115 15-134 3-118 (220)
100 3bre_A Probable two-component 99.7 7.2E-17 2.5E-21 167.2 14.0 116 15-132 19-138 (358)
101 3c3w_A Two component transcrip 99.7 2E-17 6.7E-22 161.8 8.8 120 15-136 2-124 (225)
102 1qo0_D AMIR; binding protein, 99.7 3.7E-17 1.3E-21 155.4 9.6 116 13-135 11-127 (196)
103 2b4a_A BH3024; flavodoxin-like 99.7 6.3E-17 2.2E-21 144.3 10.1 120 9-134 10-132 (138)
104 2hqr_A Putative transcriptiona 99.7 2.3E-16 7.9E-21 152.6 13.1 114 15-134 1-116 (223)
105 3sy8_A ROCR; TIM barrel phosph 99.7 2.3E-16 7.7E-21 168.6 12.7 120 14-134 3-129 (400)
106 1dc7_A NTRC, nitrogen regulati 99.7 3.8E-18 1.3E-22 147.7 -1.1 119 14-134 3-122 (124)
107 1a2o_A CHEB methylesterase; ba 99.6 7.3E-15 2.5E-19 155.9 16.0 119 14-134 3-134 (349)
108 3luf_A Two-component system re 99.6 2.3E-15 7.7E-20 151.8 8.9 102 15-120 5-107 (259)
109 2vyc_A Biodegradative arginine 99.5 9E-15 3.1E-19 169.4 9.1 119 15-134 1-134 (755)
110 1w25_A Stalked-cell differenti 99.0 9.4E-09 3.2E-13 110.4 17.4 120 14-137 152-274 (459)
111 3cwo_X Beta/alpha-barrel prote 98.9 9E-10 3.1E-14 106.3 5.9 94 39-134 6-102 (237)
112 2ayx_A Sensor kinase protein R 97.1 0.00051 1.7E-08 68.4 6.4 97 12-132 9-105 (254)
113 3n75_A LDC, lysine decarboxyla 96.8 0.0015 5.3E-08 75.6 7.5 103 27-133 19-123 (715)
114 3q7r_A Transcriptional regulat 96.1 0.031 1.1E-06 50.0 9.6 105 14-134 12-119 (121)
115 3cwo_X Beta/alpha-barrel prote 95.8 0.066 2.2E-06 51.0 11.3 82 46-128 131-221 (237)
116 2yxb_A Coenzyme B12-dependent 94.9 0.5 1.7E-05 44.6 14.1 119 13-134 17-146 (161)
117 3q58_A N-acetylmannosamine-6-p 92.1 0.78 2.7E-05 45.8 10.7 99 14-116 101-210 (229)
118 1wv2_A Thiazole moeity, thiazo 92.0 1.7 5.8E-05 44.7 13.0 100 30-133 127-238 (265)
119 3igs_A N-acetylmannosamine-6-p 90.3 1.4 4.8E-05 44.0 10.4 99 14-116 101-210 (232)
120 1ccw_A Protein (glutamate muta 89.0 9.4 0.00032 34.7 14.1 109 21-131 14-134 (137)
121 2i2x_B MTAC, methyltransferase 86.4 8.6 0.0003 38.6 13.3 112 12-131 121-242 (258)
122 3fkq_A NTRC-like two-domain pr 85.9 7.1 0.00024 40.9 12.9 103 14-131 21-126 (373)
123 2yum_A ZZZ3 protein, zinc fing 85.3 1.3 4.5E-05 36.4 5.5 52 201-257 8-62 (75)
124 1y80_A Predicted cobalamin bin 85.1 5.7 0.00019 38.3 10.9 99 14-117 88-198 (210)
125 2htm_A Thiazole biosynthesis p 84.3 7.6 0.00026 40.0 11.7 98 32-133 118-229 (268)
126 4fo4_A Inosine 5'-monophosphat 84.1 8.2 0.00028 41.2 12.4 99 14-116 120-240 (366)
127 3ezx_A MMCP 1, monomethylamine 83.6 3.5 0.00012 40.6 8.7 101 12-117 90-204 (215)
128 3ffs_A Inosine-5-monophosphate 82.8 7.3 0.00025 42.1 11.5 100 14-116 156-275 (400)
129 1xrs_B D-lysine 5,6-aminomutas 82.6 15 0.00052 37.5 13.2 116 13-133 119-258 (262)
130 2yus_A SWI/SNF-related matrix- 81.8 3 0.0001 35.1 6.4 46 200-250 17-62 (79)
131 3qja_A IGPS, indole-3-glycerol 81.0 17 0.0006 37.0 13.1 97 16-116 138-242 (272)
132 1xi3_A Thiamine phosphate pyro 80.9 11 0.00038 35.6 11.0 74 38-115 108-189 (215)
133 3kp1_A D-ornithine aminomutase 79.3 8.1 0.00028 44.5 10.6 116 14-134 602-736 (763)
134 2ekc_A AQ_1548, tryptophan syn 79.0 5.6 0.00019 40.1 8.5 71 60-130 44-143 (262)
135 3khj_A Inosine-5-monophosphate 78.9 10 0.00035 40.3 10.8 100 14-116 117-236 (361)
136 3o63_A Probable thiamine-phosp 78.6 14 0.00047 37.2 11.1 85 43-131 141-239 (243)
137 1yad_A Regulatory protein TENI 78.4 9.9 0.00034 36.6 9.8 74 38-115 110-191 (221)
138 1geq_A Tryptophan synthase alp 77.1 5 0.00017 39.4 7.3 53 76-128 69-127 (248)
139 2cu7_A KIAA1915 protein; nucle 77.0 4.3 0.00015 33.2 5.7 51 199-257 7-57 (72)
140 2hzd_A Transcriptional enhance 75.6 3 0.0001 35.8 4.5 57 199-256 4-77 (82)
141 1qop_A Tryptophan synthase alp 75.5 5.3 0.00018 40.3 7.2 72 60-131 44-144 (268)
142 2xij_A Methylmalonyl-COA mutas 75.4 25 0.00087 41.1 13.5 118 14-134 604-732 (762)
143 1req_A Methylmalonyl-COA mutas 75.2 28 0.00096 40.5 13.8 117 14-133 596-723 (727)
144 3r2g_A Inosine 5'-monophosphat 74.9 42 0.0014 35.7 14.2 98 14-116 112-228 (361)
145 3fro_A GLGA glycogen synthase; 74.2 30 0.001 35.2 12.5 107 14-132 285-394 (439)
146 3f4w_A Putative hexulose 6 pho 74.0 47 0.0016 31.3 13.2 115 14-131 77-207 (211)
147 3usb_A Inosine-5'-monophosphat 73.4 26 0.00087 38.8 12.6 100 14-116 268-388 (511)
148 2c6q_A GMP reductase 2; TIM ba 73.3 26 0.00089 36.9 12.1 101 14-118 132-255 (351)
149 4dzz_A Plasmid partitioning pr 73.3 6.2 0.00021 36.6 6.6 52 14-68 30-83 (206)
150 2bfw_A GLGA glycogen synthase; 73.3 31 0.0011 31.3 11.3 106 14-132 70-179 (200)
151 3vnd_A TSA, tryptophan synthas 71.5 5.9 0.0002 40.5 6.4 71 60-130 45-144 (267)
152 1r8j_A KAIA; circadian clock p 70.3 42 0.0014 34.7 12.1 117 13-134 8-130 (289)
153 2gek_A Phosphatidylinositol ma 70.2 16 0.00054 37.0 9.3 108 14-133 240-349 (406)
154 2gjl_A Hypothetical protein PA 70.2 37 0.0013 34.9 12.2 81 33-116 113-201 (328)
155 4avf_A Inosine-5'-monophosphat 69.7 32 0.0011 37.8 12.3 99 14-116 241-361 (490)
156 1jcn_A Inosine monophosphate d 69.6 32 0.0011 37.7 12.2 88 25-115 282-386 (514)
157 3bo9_A Putative nitroalkan dio 69.0 30 0.001 35.8 11.3 81 33-116 119-205 (326)
158 2lci_A Protein OR36; structura 68.9 11 0.00039 33.2 6.6 39 18-56 81-119 (134)
159 3bw2_A 2-nitropropane dioxygen 68.8 38 0.0013 35.5 12.2 76 37-115 144-236 (369)
160 1xm3_A Thiazole biosynthesis p 68.7 6.4 0.00022 39.8 5.9 76 38-116 126-207 (264)
161 1x41_A Transcriptional adaptor 68.6 7 0.00024 30.8 4.9 46 200-249 7-52 (60)
162 1eep_A Inosine 5'-monophosphat 67.0 27 0.00091 37.2 10.6 88 25-115 180-284 (404)
163 3sjm_A Telomeric repeat-bindin 66.9 9.9 0.00034 30.6 5.5 52 199-255 9-60 (64)
164 3fwz_A Inner membrane protein 66.9 32 0.0011 30.4 9.6 93 14-115 30-124 (140)
165 2l69_A Rossmann 2X3 fold prote 65.2 50 0.0017 29.1 10.0 115 17-134 5-124 (134)
166 2z6i_A Trans-2-enoyl-ACP reduc 64.9 37 0.0013 35.0 11.0 79 34-115 106-190 (332)
167 1ep3_A Dihydroorotate dehydrog 64.6 18 0.00061 36.5 8.3 107 25-133 151-293 (311)
168 1y0e_A Putative N-acetylmannos 63.8 31 0.001 33.0 9.5 87 27-116 107-204 (223)
169 2tps_A Protein (thiamin phosph 63.0 25 0.00087 33.5 8.7 69 43-115 122-199 (227)
170 3nav_A Tryptophan synthase alp 62.7 6.5 0.00022 40.3 4.6 55 76-130 85-146 (271)
171 1ity_A TRF1; helix-turn-helix, 62.1 18 0.00063 29.0 6.3 55 197-256 6-60 (69)
172 1z0s_A Probable inorganic poly 61.9 4.7 0.00016 41.6 3.4 93 14-132 29-122 (278)
173 4fxs_A Inosine-5'-monophosphat 61.3 52 0.0018 36.2 11.9 100 14-116 243-363 (496)
174 1ypf_A GMP reductase; GUAC, pu 61.3 1.3E+02 0.0046 31.0 14.5 90 22-115 132-238 (336)
175 2cqr_A RSGI RUH-043, DNAJ homo 61.1 27 0.00091 29.0 7.2 45 201-249 18-65 (73)
176 2q5c_A NTRC family transcripti 60.0 1E+02 0.0035 29.5 12.4 53 14-66 4-57 (196)
177 1geq_A Tryptophan synthase alp 59.9 45 0.0015 32.4 10.0 84 29-116 124-220 (248)
178 2eqr_A N-COR1, N-COR, nuclear 59.6 15 0.00051 29.1 5.3 44 199-247 10-53 (61)
179 2f9f_A First mannosyl transfer 59.5 59 0.002 29.3 10.2 108 14-134 50-163 (177)
180 1ujp_A Tryptophan synthase alp 58.5 9 0.00031 39.1 4.8 84 46-130 28-140 (271)
181 2v82_A 2-dehydro-3-deoxy-6-pho 57.7 22 0.00076 33.8 7.2 93 32-131 95-197 (212)
182 1rzu_A Glycogen synthase 1; gl 57.6 49 0.0017 34.7 10.5 108 14-132 320-439 (485)
183 3c48_A Predicted glycosyltrans 57.5 42 0.0014 34.4 9.8 109 14-133 276-391 (438)
184 2elk_A SPCC24B10.08C protein; 57.2 13 0.00045 29.1 4.5 46 201-250 9-55 (58)
185 3duw_A OMT, O-methyltransferas 57.2 53 0.0018 30.7 9.7 71 10-82 79-153 (223)
186 1h5y_A HISF; histidine biosynt 57.2 57 0.002 31.1 10.1 80 46-127 155-244 (253)
187 2qzs_A Glycogen synthase; glyc 56.9 41 0.0014 35.2 9.8 108 14-132 321-440 (485)
188 1rd5_A Tryptophan synthase alp 56.7 14 0.00048 36.7 5.8 70 60-130 45-139 (262)
189 3okp_A GDP-mannose-dependent a 55.9 25 0.00085 35.2 7.6 74 48-132 264-343 (394)
190 1thf_D HISF protein; thermophI 55.9 86 0.0029 30.3 11.3 79 47-127 153-241 (253)
191 4adt_A Pyridoxine biosynthetic 55.9 72 0.0025 33.0 11.1 58 76-133 196-260 (297)
192 1yxy_A Putative N-acetylmannos 55.8 47 0.0016 32.0 9.3 85 27-116 121-215 (234)
193 3rht_A (gatase1)-like protein; 55.8 4.5 0.00015 41.2 2.0 49 15-67 5-57 (259)
194 3tsm_A IGPS, indole-3-glycerol 55.5 79 0.0027 32.3 11.2 85 27-115 158-248 (272)
195 1vrd_A Inosine-5'-monophosphat 55.3 74 0.0025 34.6 11.7 99 14-115 249-368 (494)
196 2w6r_A Imidazole glycerol phos 55.1 46 0.0016 32.6 9.2 67 47-116 158-229 (266)
197 3bul_A Methionine synthase; tr 54.8 49 0.0017 37.5 10.4 103 14-118 98-213 (579)
198 3qz6_A HPCH/HPAI aldolase; str 54.8 85 0.0029 31.5 11.3 99 30-130 6-110 (261)
199 1ka9_F Imidazole glycerol phos 54.6 73 0.0025 30.9 10.5 78 48-127 155-242 (252)
200 3beo_A UDP-N-acetylglucosamine 54.2 1.1E+02 0.0039 30.3 12.2 60 61-133 283-342 (375)
201 1ka9_F Imidazole glycerol phos 53.3 59 0.002 31.5 9.6 70 45-116 31-104 (252)
202 3c3y_A Pfomt, O-methyltransfer 52.9 57 0.002 31.5 9.4 59 11-69 92-156 (237)
203 1h5y_A HISF; histidine biosynt 52.2 62 0.0021 30.8 9.5 70 45-116 33-106 (253)
204 1sui_A Caffeoyl-COA O-methyltr 52.0 1.4E+02 0.0049 29.0 12.2 70 11-82 101-176 (247)
205 2d00_A V-type ATP synthase sub 51.7 94 0.0032 27.4 9.7 75 14-94 3-79 (109)
206 2w6r_A Imidazole glycerol phos 51.7 49 0.0017 32.4 8.8 71 46-118 31-105 (266)
207 2iw5_B Protein corest, REST co 51.3 19 0.00064 36.4 5.5 52 197-253 129-180 (235)
208 2iw1_A Lipopolysaccharide core 51.2 51 0.0017 32.7 9.0 106 15-133 229-337 (374)
209 1v4v_A UDP-N-acetylglucosamine 51.2 1.2E+02 0.004 30.5 11.7 100 15-132 231-333 (376)
210 2yqk_A Arginine-glutamic acid 51.0 31 0.0011 27.5 5.8 46 199-248 7-52 (63)
211 2oo3_A Protein involved in cat 50.8 11 0.00038 39.0 4.0 55 14-68 113-167 (283)
212 3l9w_A Glutathione-regulated p 50.5 61 0.0021 34.7 9.9 93 14-115 27-121 (413)
213 2v5j_A 2,4-dihydroxyhept-2-ENE 49.8 1.6E+02 0.0056 30.0 12.6 97 30-129 30-132 (287)
214 2xag_B REST corepressor 1; ami 49.4 11 0.00038 41.8 3.9 52 199-255 378-429 (482)
215 2avd_A Catechol-O-methyltransf 49.1 71 0.0024 29.9 9.2 71 10-82 90-165 (229)
216 1p0k_A Isopentenyl-diphosphate 48.8 1.3E+02 0.0046 30.9 12.0 88 26-116 166-280 (349)
217 3cbg_A O-methyltransferase; cy 47.9 71 0.0024 30.6 9.1 60 10-69 93-157 (232)
218 2r60_A Glycosyl transferase, g 47.9 90 0.0031 32.9 10.7 95 27-132 321-423 (499)
219 2vws_A YFAU, 2-keto-3-deoxy su 47.9 2E+02 0.0067 28.8 12.7 97 30-129 9-111 (267)
220 3qhp_A Type 1 capsular polysac 47.5 70 0.0024 28.0 8.4 106 14-133 32-140 (166)
221 2xxa_A Signal recognition part 47.5 36 0.0012 36.8 7.6 53 14-68 129-191 (433)
222 3tdn_A FLR symmetric alpha-bet 47.4 53 0.0018 32.0 8.2 69 46-116 36-108 (247)
223 3l4e_A Uncharacterized peptida 46.5 80 0.0027 30.6 9.2 62 14-83 27-98 (206)
224 3paj_A Nicotinate-nucleotide p 45.9 85 0.0029 33.0 9.8 93 16-115 204-302 (320)
225 3kts_A Glycerol uptake operon 45.9 25 0.00084 34.5 5.4 62 48-115 117-178 (192)
226 3tr6_A O-methyltransferase; ce 45.5 1.1E+02 0.0036 28.6 9.8 60 10-69 85-149 (225)
227 1vgv_A UDP-N-acetylglucosamine 45.4 90 0.0031 31.2 9.8 43 86-133 300-342 (384)
228 3ceu_A Thiamine phosphate pyro 45.4 30 0.001 33.2 6.0 67 43-114 94-170 (210)
229 1vzw_A Phosphoribosyl isomeras 45.4 92 0.0032 30.1 9.6 80 46-127 147-239 (244)
230 1thf_D HISF protein; thermophI 44.9 1E+02 0.0035 29.8 9.8 71 45-117 30-104 (253)
231 4af0_A Inosine-5'-monophosphat 44.7 1.7E+02 0.0057 33.1 12.4 100 14-116 293-413 (556)
232 3s5p_A Ribose 5-phosphate isom 43.8 1.9E+02 0.0066 27.7 11.0 114 10-132 17-146 (166)
233 3tha_A Tryptophan synthase alp 43.7 13 0.00044 37.8 3.1 56 76-134 79-140 (252)
234 1w0t_A Telomeric repeat bindin 43.5 45 0.0015 25.3 5.5 50 201-255 2-51 (53)
235 3ajx_A 3-hexulose-6-phosphate 43.5 18 0.00063 34.1 4.0 82 46-129 11-98 (207)
236 2iuy_A Avigt4, glycosyltransfe 43.2 22 0.00076 35.3 4.8 106 15-132 189-307 (342)
237 3dr5_A Putative O-methyltransf 43.1 32 0.0011 33.2 5.7 68 11-82 78-149 (221)
238 2d9a_A B-MYB, MYB-related prot 43.0 42 0.0015 26.0 5.4 50 199-255 6-55 (60)
239 3lab_A Putative KDPG (2-keto-3 43.0 1.1E+02 0.0038 30.3 9.7 67 60-128 38-104 (217)
240 1tqj_A Ribulose-phosphate 3-ep 42.7 35 0.0012 33.6 6.0 83 46-131 18-109 (230)
241 4e5v_A Putative THUA-like prot 42.7 29 0.00099 35.5 5.6 76 14-94 4-93 (281)
242 3l0g_A Nicotinate-nucleotide p 42.5 75 0.0026 33.2 8.7 91 17-114 181-277 (300)
243 1gox_A (S)-2-hydroxy-acid oxid 42.5 83 0.0028 33.1 9.3 87 27-116 214-309 (370)
244 3gnn_A Nicotinate-nucleotide p 42.2 85 0.0029 32.6 9.1 66 41-113 213-278 (298)
245 2x6q_A Trehalose-synthase TRET 42.1 1.7E+02 0.0058 29.7 11.4 106 14-132 262-378 (416)
246 3iwp_A Copper homeostasis prot 41.5 1.2E+02 0.0039 31.6 9.8 91 38-129 39-150 (287)
247 2y88_A Phosphoribosyl isomeras 41.4 1.5E+02 0.0052 28.4 10.4 78 47-126 151-241 (244)
248 2fli_A Ribulose-phosphate 3-ep 41.4 30 0.001 32.9 5.2 68 60-128 131-215 (220)
249 3f4w_A Putative hexulose 6 pho 41.2 26 0.0009 33.1 4.8 82 47-130 12-99 (211)
250 3ovp_A Ribulose-phosphate 3-ep 41.0 85 0.0029 30.9 8.6 71 60-131 134-217 (228)
251 3o07_A Pyridoxine biosynthesis 40.9 41 0.0014 34.9 6.3 60 75-134 186-252 (291)
252 2ixa_A Alpha-N-acetylgalactosa 40.8 80 0.0027 33.6 9.0 114 14-133 20-141 (444)
253 3q2i_A Dehydrogenase; rossmann 40.7 1.8E+02 0.0061 29.6 11.4 108 13-133 12-125 (354)
254 1qpo_A Quinolinate acid phosph 40.4 81 0.0028 32.4 8.5 94 17-115 168-268 (284)
255 1rd5_A Tryptophan synthase alp 40.3 50 0.0017 32.7 6.8 42 75-116 189-230 (262)
256 3tqv_A Nicotinate-nucleotide p 40.3 1.1E+02 0.0037 31.7 9.5 91 17-114 172-268 (287)
257 2xci_A KDO-transferase, 3-deox 40.3 52 0.0018 34.0 7.2 111 14-133 225-346 (374)
258 1qo2_A Molecule: N-((5-phospho 40.3 1.1E+02 0.0039 29.5 9.3 78 46-126 145-239 (241)
259 3ip3_A Oxidoreductase, putativ 39.8 32 0.0011 35.2 5.4 36 98-133 80-117 (337)
260 1guu_A C-MYB, MYB proto-oncoge 39.7 45 0.0015 25.0 4.9 45 201-249 3-47 (52)
261 2ho3_A Oxidoreductase, GFO/IDH 39.7 2.1E+02 0.007 28.7 11.5 105 15-132 2-111 (325)
262 1qdl_B Protein (anthranilate s 39.1 17 0.00057 34.5 3.0 76 15-94 1-84 (195)
263 3sgz_A Hydroxyacid oxidase 2; 39.1 96 0.0033 32.9 9.1 87 27-116 206-301 (352)
264 1dxe_A 2-dehydro-3-deoxy-galac 38.5 2.5E+02 0.0085 27.8 11.7 97 30-128 10-111 (256)
265 1x58_A Hypothetical protein 49 38.0 61 0.0021 26.3 5.6 55 199-259 6-61 (62)
266 1qap_A Quinolinic acid phospho 37.5 2.1E+02 0.0071 29.5 11.1 91 17-115 182-279 (296)
267 2cjj_A Radialis; plant develop 37.4 50 0.0017 28.6 5.4 46 201-250 8-56 (93)
268 2fhp_A Methylase, putative; al 37.4 1.9E+02 0.0064 25.7 9.7 68 15-82 68-138 (187)
269 2aje_A Telomere repeat-binding 37.3 50 0.0017 29.3 5.5 57 196-257 8-66 (105)
270 2hnk_A SAM-dependent O-methylt 37.0 1.4E+02 0.0049 28.3 9.4 60 11-70 82-157 (239)
271 1qop_A Tryptophan synthase alp 36.7 1.1E+02 0.0037 30.6 8.7 42 76-117 194-235 (268)
272 3axs_A Probable N(2),N(2)-dime 36.7 1.2E+02 0.0041 32.4 9.5 77 15-97 78-160 (392)
273 1me8_A Inosine-5'-monophosphat 36.3 2.6E+02 0.0089 30.5 12.4 73 41-116 289-381 (503)
274 3ic5_A Putative saccharopine d 36.3 1E+02 0.0035 25.3 7.2 90 14-113 5-97 (118)
275 2p10_A MLL9387 protein; putati 36.1 1.6E+02 0.0054 30.5 9.8 79 36-117 161-260 (286)
276 3s83_A Ggdef family protein; s 36.1 1.4E+02 0.0048 28.9 9.3 97 30-129 144-254 (259)
277 4e38_A Keto-hydroxyglutarate-a 36.0 1.1E+02 0.0036 30.6 8.4 91 31-123 28-120 (232)
278 3pfn_A NAD kinase; structural 35.7 47 0.0016 35.4 6.1 100 16-134 40-165 (365)
279 2i2c_A Probable inorganic poly 35.3 64 0.0022 32.4 6.7 87 15-134 1-94 (272)
280 3llv_A Exopolyphosphatase-rela 35.1 1.9E+02 0.0064 25.0 9.1 51 60-114 70-121 (141)
281 1qv9_A F420-dependent methylen 35.1 55 0.0019 33.4 6.0 58 60-118 64-121 (283)
282 2jjm_A Glycosyl transferase, g 35.0 70 0.0024 32.4 7.1 66 61-133 285-350 (394)
283 3vk5_A MOEO5; TIM barrel, tran 34.8 61 0.0021 33.6 6.5 57 60-117 199-257 (286)
284 3tfw_A Putative O-methyltransf 34.7 75 0.0026 30.8 7.0 70 10-82 84-156 (248)
285 2l2q_A PTS system, cellobiose- 34.7 42 0.0015 29.1 4.6 77 12-95 2-84 (109)
286 3usb_A Inosine-5'-monophosphat 34.6 89 0.003 34.5 8.3 67 46-115 256-324 (511)
287 2nzl_A Hydroxyacid oxidase 1; 34.6 76 0.0026 33.9 7.5 89 27-118 241-339 (392)
288 3oy2_A Glycosyltransferase B73 34.5 1.1E+02 0.0039 30.9 8.6 107 15-133 216-355 (413)
289 3u81_A Catechol O-methyltransf 34.5 62 0.0021 30.5 6.2 61 11-71 80-145 (221)
290 3gr7_A NADPH dehydrogenase; fl 34.5 2.1E+02 0.007 29.8 10.7 65 47-113 231-303 (340)
291 3rc1_A Sugar 3-ketoreductase; 34.4 3.9E+02 0.013 27.2 13.2 106 14-133 27-139 (350)
292 1zh8_A Oxidoreductase; TM0312, 34.3 1.5E+02 0.005 30.3 9.4 108 12-132 16-131 (340)
293 2nli_A Lactate oxidase; flavoe 34.2 1E+02 0.0036 32.5 8.5 88 26-116 217-313 (368)
294 3ffs_A Inosine-5-monophosphate 33.7 79 0.0027 34.1 7.5 65 48-115 146-211 (400)
295 1h1y_A D-ribulose-5-phosphate 33.7 41 0.0014 32.7 4.8 97 33-130 108-220 (228)
296 2dul_A N(2),N(2)-dimethylguano 33.6 1.7E+02 0.0059 30.8 10.1 75 15-95 72-164 (378)
297 1gvd_A MYB proto-oncogene prot 33.3 56 0.0019 24.5 4.6 45 201-249 3-47 (52)
298 1izc_A Macrophomate synthase i 33.3 2.8E+02 0.0095 29.0 11.4 82 45-129 51-138 (339)
299 2cqq_A RSGI RUH-037, DNAJ homo 33.1 65 0.0022 26.5 5.2 44 201-249 8-54 (72)
300 1kbi_A Cytochrome B2, L-LCR; f 32.9 1.4E+02 0.0049 32.9 9.6 87 27-116 332-432 (511)
301 2qfm_A Spermine synthase; sper 32.9 2E+02 0.0067 30.7 10.2 56 15-70 212-277 (364)
302 1xea_A Oxidoreductase, GFO/IDH 32.6 1.2E+02 0.004 30.6 8.3 105 15-132 3-112 (323)
303 2khz_A C-MYC-responsive protei 32.5 1.6E+02 0.0053 27.5 8.5 114 13-134 10-152 (165)
304 4hkt_A Inositol 2-dehydrogenas 32.1 1.9E+02 0.0066 29.0 9.8 105 15-133 4-113 (331)
305 3mz0_A Inositol 2-dehydrogenas 32.1 3.6E+02 0.012 27.1 12.0 107 15-133 3-116 (344)
306 2px0_A Flagellar biosynthesis 32.1 86 0.0029 31.9 7.1 59 14-75 134-195 (296)
307 3sr7_A Isopentenyl-diphosphate 31.6 2.8E+02 0.0096 29.3 11.2 87 26-116 194-307 (365)
308 3ot5_A UDP-N-acetylglucosamine 31.6 4.6E+02 0.016 27.3 13.1 43 86-133 319-361 (403)
309 3kru_A NADH:flavin oxidoreduct 31.4 2E+02 0.0067 30.1 9.9 91 25-115 195-305 (343)
310 2al1_A Enolase 1, 2-phospho-D- 31.1 55 0.0019 35.6 5.8 96 21-119 219-348 (436)
311 2f6u_A GGGPS, (S)-3-O-geranylg 31.0 48 0.0017 33.2 4.9 64 49-122 24-90 (234)
312 3u3x_A Oxidoreductase; structu 30.9 1.3E+02 0.0045 31.0 8.5 106 14-132 26-137 (361)
313 2glx_A 1,5-anhydro-D-fructose 30.8 3E+02 0.01 27.5 10.9 105 15-132 1-111 (332)
314 1vcf_A Isopentenyl-diphosphate 30.6 1.4E+02 0.0047 30.7 8.5 88 27-118 171-288 (332)
315 3euw_A MYO-inositol dehydrogen 30.4 2.3E+02 0.0078 28.6 10.1 106 14-132 4-114 (344)
316 1rpx_A Protein (ribulose-phosp 30.3 38 0.0013 32.7 4.0 55 60-115 140-206 (230)
317 1ws6_A Methyltransferase; stru 30.0 1.8E+02 0.006 25.4 8.1 68 15-83 64-132 (171)
318 1x1o_A Nicotinate-nucleotide p 29.9 3.2E+02 0.011 28.0 11.0 93 16-115 168-267 (286)
319 3ajd_A Putative methyltransfer 29.8 2.2E+02 0.0075 28.0 9.6 54 15-68 109-164 (274)
320 1tqx_A D-ribulose-5-phosphate 29.7 83 0.0028 31.1 6.3 82 33-116 109-201 (227)
321 3ezy_A Dehydrogenase; structur 29.5 1.5E+02 0.005 30.2 8.4 106 15-133 3-114 (344)
322 4had_A Probable oxidoreductase 29.4 1.4E+02 0.0046 30.3 8.1 109 12-133 21-136 (350)
323 1viz_A PCRB protein homolog; s 29.3 80 0.0027 31.7 6.2 54 48-115 23-83 (240)
324 1ujp_A Tryptophan synthase alp 29.2 1.3E+02 0.0043 30.5 7.7 40 76-117 191-230 (271)
325 1i1q_B Anthranilate synthase c 29.1 54 0.0019 30.7 4.7 77 15-94 1-83 (192)
326 3r2g_A Inosine 5'-monophosphat 29.0 56 0.0019 34.8 5.2 64 49-115 103-168 (361)
327 4a29_A Engineered retro-aldol 29.0 4.8E+02 0.016 26.6 13.2 87 27-116 142-233 (258)
328 3cea_A MYO-inositol 2-dehydrog 28.8 3E+02 0.01 27.6 10.6 106 13-130 7-118 (346)
329 3ec7_A Putative dehydrogenase; 28.8 1.5E+02 0.005 30.6 8.4 108 14-133 23-137 (357)
330 3qja_A IGPS, indole-3-glycerol 28.8 1.3E+02 0.0044 30.5 7.7 57 76-132 102-160 (272)
331 2crg_A Metastasis associated p 28.7 1.1E+02 0.0036 24.9 5.8 46 199-248 6-51 (70)
332 3jy6_A Transcriptional regulat 28.4 2.1E+02 0.0073 27.2 9.0 64 26-96 25-94 (276)
333 2fqx_A Membrane lipoprotein TM 28.4 2.4E+02 0.0082 28.2 9.7 65 27-96 26-95 (318)
334 1lst_A Lysine, arginine, ornit 28.4 1.4E+02 0.0048 27.2 7.4 52 14-68 111-162 (239)
335 2akz_A Gamma enolase, neural; 28.3 62 0.0021 35.2 5.6 103 21-126 217-352 (439)
336 2gjl_A Hypothetical protein PA 28.3 3.3E+02 0.011 27.6 10.9 62 46-116 84-145 (328)
337 3tqp_A Enolase; energy metabol 28.2 64 0.0022 35.0 5.6 73 46-119 264-340 (428)
338 3c6k_A Spermine synthase; sper 28.2 1.2E+02 0.0041 32.5 7.7 57 15-71 229-295 (381)
339 2pyy_A Ionotropic glutamate re 28.1 1.5E+02 0.0053 26.5 7.5 49 13-68 111-159 (228)
340 1tlt_A Putative oxidoreductase 27.7 1.1E+02 0.0036 30.8 6.9 104 14-132 5-114 (319)
341 3khj_A Inosine-5-monophosphate 27.7 2E+02 0.0069 30.3 9.3 65 48-115 107-172 (361)
342 1wa3_A 2-keto-3-deoxy-6-phosph 27.7 1.1E+02 0.0038 28.6 6.7 64 46-115 113-177 (205)
343 3c3p_A Methyltransferase; NP_9 27.5 2.5E+02 0.0086 25.8 9.1 67 11-83 78-147 (210)
344 1wa3_A 2-keto-3-deoxy-6-phosph 27.5 2.4E+02 0.0082 26.3 9.0 89 34-126 7-99 (205)
345 3uuw_A Putative oxidoreductase 27.4 1.8E+02 0.0061 28.9 8.5 104 14-133 6-116 (308)
346 2dim_A Cell division cycle 5-l 27.0 1.2E+02 0.0041 24.1 5.8 50 199-255 7-56 (70)
347 3k9g_A PF-32 protein; ssgcid, 26.5 1E+02 0.0035 29.8 6.3 13 13-25 54-66 (267)
348 1p4c_A L(+)-mandelate dehydrog 26.5 1.2E+02 0.0041 32.1 7.3 88 26-116 213-307 (380)
349 3w01_A Heptaprenylglyceryl pho 26.4 56 0.0019 32.9 4.4 60 49-117 27-88 (235)
350 3k9c_A Transcriptional regulat 26.3 1.2E+02 0.0042 29.3 6.9 65 26-97 29-98 (289)
351 4fxs_A Inosine-5'-monophosphat 26.2 1.4E+02 0.0047 32.9 7.9 64 48-115 234-299 (496)
352 3s28_A Sucrose synthase 1; gly 26.1 3.6E+02 0.012 31.6 11.8 108 15-132 604-729 (816)
353 1g5t_A COB(I)alamin adenosyltr 25.9 1.5E+02 0.0051 28.8 7.3 57 48-104 106-169 (196)
354 3vnd_A TSA, tryptophan synthas 25.9 1.9E+02 0.0065 29.2 8.4 101 14-117 123-236 (267)
355 2i7c_A Spermidine synthase; tr 25.9 2E+02 0.0069 28.6 8.6 57 13-72 101-163 (283)
356 3vkj_A Isopentenyl-diphosphate 25.7 3E+02 0.01 29.1 10.2 87 26-116 175-296 (368)
357 1vc4_A Indole-3-glycerol phosp 25.7 88 0.003 31.3 5.8 85 28-116 141-236 (254)
358 3dty_A Oxidoreductase, GFO/IDH 25.5 4.6E+02 0.016 27.2 11.6 113 13-133 11-135 (398)
359 2igt_A SAM dependent methyltra 25.4 1.5E+02 0.0051 30.6 7.6 55 14-68 175-233 (332)
360 1id1_A Putative potassium chan 25.2 3.5E+02 0.012 23.7 10.0 109 14-132 26-138 (153)
361 4adt_A Pyridoxine biosynthetic 25.0 3.3E+02 0.011 28.0 10.1 82 28-113 14-104 (297)
362 1f0k_A MURG, UDP-N-acetylgluco 24.9 1E+02 0.0035 30.6 6.1 53 75-130 264-322 (364)
363 3b0p_A TRNA-dihydrouridine syn 24.7 3.2E+02 0.011 28.3 10.1 89 24-115 112-224 (350)
364 3tsa_A SPNG, NDP-rhamnosyltran 24.6 1.3E+02 0.0044 30.4 6.9 71 15-93 2-141 (391)
365 3db2_A Putative NADPH-dependen 24.6 3E+02 0.01 27.9 9.8 106 14-133 5-116 (354)
366 3p9n_A Possible methyltransfer 24.5 2.8E+02 0.0095 25.0 8.7 53 15-69 68-122 (189)
367 2yw3_A 4-hydroxy-2-oxoglutarat 24.5 3.8E+02 0.013 25.6 9.9 83 43-133 110-200 (207)
368 3iwt_A 178AA long hypothetical 24.5 2E+02 0.0067 26.7 7.7 61 9-69 10-90 (178)
369 1zco_A 2-dehydro-3-deoxyphosph 24.4 2.1E+02 0.0073 28.7 8.4 81 48-132 147-257 (262)
370 2qjg_A Putative aldolase MJ040 24.3 2.9E+02 0.0099 27.0 9.3 69 60-132 179-258 (273)
371 2ckx_A NGTRF1, telomere bindin 24.1 1.1E+02 0.0037 25.9 5.1 50 203-257 2-53 (83)
372 1wxx_A TT1595, hypothetical pr 24.1 2.3E+02 0.0078 29.4 8.8 54 15-68 232-287 (382)
373 1jvn_A Glutamine, bifunctional 24.0 3.3E+02 0.011 30.3 10.5 79 47-127 454-543 (555)
374 2an1_A Putative kinase; struct 24.0 1.5E+02 0.0051 29.6 7.1 98 15-134 6-120 (292)
375 3m2t_A Probable dehydrogenase; 23.9 2.3E+02 0.0078 29.1 8.7 108 14-133 5-118 (359)
376 3dm5_A SRP54, signal recogniti 23.8 2.4E+02 0.0081 30.7 9.1 54 14-69 128-191 (443)
377 4gud_A Imidazole glycerol phos 23.8 64 0.0022 30.5 4.2 43 16-66 4-46 (211)
378 3hgj_A Chromate reductase; TIM 23.7 2E+02 0.0069 29.9 8.3 40 75-114 276-315 (349)
379 1z41_A YQJM, probable NADH-dep 23.7 2.9E+02 0.01 28.4 9.5 40 75-114 265-304 (338)
380 2f6u_A GGGPS, (S)-3-O-geranylg 23.7 1.3E+02 0.0045 30.0 6.5 54 62-117 165-219 (234)
381 3e18_A Oxidoreductase; dehydro 23.7 2.9E+02 0.0098 28.3 9.4 106 14-133 5-115 (359)
382 1wl8_A GMP synthase [glutamine 23.6 68 0.0023 29.9 4.2 77 15-95 1-80 (189)
383 1jcn_A Inosine monophosphate d 23.6 1.8E+02 0.0062 31.7 8.3 66 47-115 256-323 (514)
384 2qai_A V-type ATP synthase sub 23.6 3.7E+02 0.013 23.8 8.8 67 15-95 1-77 (111)
385 1o4u_A Type II quinolic acid p 23.4 1.1E+02 0.0039 31.4 6.2 95 17-115 166-267 (285)
386 3c0k_A UPF0064 protein YCCW; P 23.3 1.8E+02 0.0062 30.3 7.9 54 15-68 244-301 (396)
387 3v5n_A Oxidoreductase; structu 23.3 4.2E+02 0.014 27.8 10.9 112 14-132 37-159 (417)
388 4fo4_A Inosine 5'-monophosphat 23.0 2.7E+02 0.0092 29.5 9.2 65 48-115 110-176 (366)
389 3lkv_A Uncharacterized conserv 22.8 95 0.0032 31.0 5.4 103 10-125 136-248 (302)
390 3bt7_A TRNA (uracil-5-)-methyl 22.7 2.4E+02 0.0082 29.1 8.7 78 15-95 236-327 (369)
391 1vlj_A NADH-dependent butanol 22.7 2.3E+02 0.0077 30.0 8.6 63 15-82 44-120 (407)
392 4gqa_A NAD binding oxidoreduct 22.6 2.9E+02 0.0099 28.7 9.3 107 14-133 26-146 (412)
393 2fpo_A Methylase YHHF; structu 22.3 2.5E+02 0.0087 26.0 8.0 65 16-83 79-145 (202)
394 1f76_A Dihydroorotate dehydrog 22.3 3.5E+02 0.012 27.5 9.7 39 77-115 277-317 (336)
395 3moi_A Probable dehydrogenase; 22.2 2.6E+02 0.009 28.9 8.9 105 15-133 3-114 (387)
396 3brq_A HTH-type transcriptiona 22.2 3.1E+02 0.011 26.0 8.8 67 25-96 38-110 (296)
397 2roh_A RTBP1, telomere binding 22.2 1.4E+02 0.0049 27.1 5.9 55 197-256 27-83 (122)
398 3kke_A LACI family transcripti 22.1 2.1E+02 0.0073 27.7 7.8 66 25-96 32-103 (303)
399 2cu0_A Inosine-5'-monophosphat 22.0 2.3E+02 0.008 30.7 8.7 40 77-116 318-357 (486)
400 3qk7_A Transcriptional regulat 22.0 2.5E+02 0.0087 27.0 8.3 65 26-96 28-97 (294)
401 2qr6_A IMP dehydrogenase/GMP r 22.0 3.8E+02 0.013 28.0 10.1 78 34-115 151-238 (393)
402 2pa6_A Enolase; glycolysis, ly 22.0 83 0.0028 33.7 5.0 104 20-126 220-349 (427)
403 2gl5_A Putative dehydratase pr 21.9 1.7E+02 0.0057 30.8 7.4 81 46-128 230-311 (410)
404 3ajx_A 3-hexulose-6-phosphate 21.9 3.4E+02 0.012 25.2 8.9 84 27-114 92-184 (207)
405 3inp_A D-ribulose-phosphate 3- 21.7 1.4E+02 0.0049 29.9 6.4 83 46-130 41-130 (246)
406 2rdx_A Mandelate racemase/muco 21.7 1.5E+02 0.0051 30.9 6.9 70 46-120 201-271 (379)
407 3kux_A Putative oxidoreductase 21.5 3.3E+02 0.011 27.6 9.4 105 14-133 7-117 (352)
408 1jub_A Dihydroorotate dehydrog 21.5 2.4E+02 0.0082 28.3 8.2 68 46-115 107-191 (311)
409 3e9m_A Oxidoreductase, GFO/IDH 21.5 2.9E+02 0.01 27.8 8.9 107 14-133 5-117 (330)
410 2fym_A Enolase; RNA degradosom 21.4 1.6E+02 0.0053 31.7 7.0 79 46-127 268-352 (431)
411 2h6r_A Triosephosphate isomera 21.4 4E+02 0.014 25.7 9.4 107 14-124 82-212 (219)
412 3bbl_A Regulatory protein of L 21.4 3E+02 0.01 26.3 8.6 66 25-96 25-96 (287)
413 3abi_A Putative uncharacterize 21.4 1.5E+02 0.0051 30.6 6.7 92 13-115 15-106 (365)
414 1uir_A Polyamine aminopropyltr 21.3 2.9E+02 0.01 27.9 8.8 56 14-72 101-163 (314)
415 2y88_A Phosphoribosyl isomeras 21.3 1.3E+02 0.0044 28.9 5.9 69 46-117 32-104 (244)
416 4gmf_A Yersiniabactin biosynth 21.2 98 0.0033 32.7 5.3 35 99-133 84-118 (372)
417 3tqv_A Nicotinate-nucleotide p 21.1 1.6E+02 0.0054 30.4 6.7 68 61-130 169-239 (287)
418 3fro_A GLGA glycogen synthase; 21.1 2.8E+02 0.0095 27.8 8.6 32 14-45 2-42 (439)
419 4avf_A Inosine-5'-monophosphat 21.1 2E+02 0.0068 31.5 7.9 67 46-115 229-297 (490)
420 2b78_A Hypothetical protein SM 21.1 2.2E+02 0.0075 29.8 8.0 53 16-68 237-293 (385)
421 2yrx_A Phosphoribosylglycinami 21.0 3.5E+02 0.012 28.5 9.7 55 11-67 18-90 (451)
422 3nav_A Tryptophan synthase alp 21.0 1.9E+02 0.0066 29.3 7.3 97 18-117 130-238 (271)
423 3p3b_A Mandelate racemase/muco 21.0 1.3E+02 0.0044 31.7 6.2 71 46-120 213-289 (392)
424 1ydw_A AX110P-like protein; st 20.9 3.6E+02 0.012 27.4 9.5 109 14-132 6-120 (362)
425 3r3h_A O-methyltransferase, SA 20.9 80 0.0027 30.7 4.3 59 11-69 82-145 (242)
426 3bfj_A 1,3-propanediol oxidore 20.8 1.8E+02 0.0062 30.4 7.3 63 15-82 34-111 (387)
427 2ffh_A Protein (FFH); SRP54, s 20.8 1.7E+02 0.0058 31.6 7.2 54 13-68 125-188 (425)
428 4fyk_A Deoxyribonucleoside 5'- 20.8 2.8E+02 0.0097 25.9 7.8 104 23-134 17-143 (152)
429 2v25_A Major cell-binding fact 20.7 2.4E+02 0.0081 25.8 7.4 53 13-68 147-201 (259)
430 3cvo_A Methyltransferase-like 20.6 90 0.0031 30.4 4.5 113 14-130 51-199 (202)
431 3dbi_A Sugar-binding transcrip 20.5 4.3E+02 0.015 26.0 9.8 67 25-96 80-152 (338)
432 2r8r_A Sensor protein; KDPD, P 20.5 3.3E+02 0.011 27.1 8.7 108 13-127 33-173 (228)
433 3c3k_A Alanine racemase; struc 20.5 2.5E+02 0.0085 26.9 7.8 64 26-96 26-95 (285)
434 3dqp_A Oxidoreductase YLBE; al 20.4 3.6E+02 0.012 24.8 8.6 30 15-44 1-30 (219)
435 3jr2_A Hexulose-6-phosphate sy 20.4 65 0.0022 31.0 3.5 82 46-129 17-104 (218)
436 1dbq_A Purine repressor; trans 20.4 3.5E+02 0.012 25.6 8.8 66 26-96 25-96 (289)
437 3td9_A Branched chain amino ac 20.4 4.6E+02 0.016 25.9 10.0 83 15-101 150-244 (366)
438 3ntv_A MW1564 protein; rossman 20.4 1.9E+02 0.0064 27.5 6.8 64 14-82 95-162 (232)
439 1j8m_F SRP54, signal recogniti 20.4 1.1E+02 0.0039 31.0 5.5 58 14-75 126-193 (297)
440 1qo2_A Molecule: N-((5-phospho 20.3 99 0.0034 29.9 4.8 40 76-116 63-102 (241)
441 2wqp_A Polysialic acid capsule 20.3 2.9E+02 0.01 29.2 8.7 82 48-132 164-266 (349)
442 3hm2_A Precorrin-6Y C5,15-meth 20.2 2.2E+02 0.0077 24.9 6.9 56 14-72 49-106 (178)
443 3gjy_A Spermidine synthase; AP 20.2 1.2E+02 0.0042 31.5 5.7 59 11-72 111-171 (317)
444 3h2s_A Putative NADH-flavin re 20.2 1.3E+02 0.0044 27.8 5.4 57 15-73 1-57 (224)
445 4fzr_A SSFS6; structural genom 20.0 2.4E+02 0.0082 28.5 7.9 73 14-94 15-151 (398)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.92 E-value=2.8e-24 Score=199.67 Aligned_cols=120 Identities=28% Similarity=0.555 Sum_probs=111.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MD 87 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~d 87 (663)
...+|||||||++..|..++.+|+..||. |.++.++.+|++++++. .||+||+|++||+|||+++++.||.. ++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~~~~--~~DlillD~~MP~mdG~el~~~ir~~~~~~~ 87 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKG--DFDFVVTDWNMPGMQGIDLLKNIRADEELKH 87 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCCC
Confidence 35789999999999999999999999996 66899999999999876 79999999999999999999999743 57
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+|||++|++.+.+.+.+|+++||++||.|||+.++|..+++++++|
T Consensus 88 ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~R 133 (134)
T 3to5_A 88 LPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFER 133 (134)
T ss_dssp CCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC-
T ss_pred CeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999998764
No 2
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.91 E-value=2.8e-25 Score=182.47 Aligned_cols=63 Identities=73% Similarity=1.155 Sum_probs=60.9
Q ss_pred CCCCCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhhhhhhh
Q 006057 196 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRIS 258 (663)
Q Consensus 196 ~~kk~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~rl~ 258 (663)
+.+|+|++||+|||++|++||++||.++|+||+|+++|+|+|||++||+|||||||++++|++
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r~~ 64 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKKVS 64 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHccC
Confidence 568999999999999999999999999999999999999999999999999999999999974
No 3
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.86 E-value=8.4e-21 Score=166.66 Aligned_cols=117 Identities=30% Similarity=0.459 Sum_probs=110.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlii~D~~~p~~~g~~~~~~lr~~~~~~ii~~t 80 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMVEEL--QPDLILLDIMLPNKDGVEVCREVRKKYDMPIIMLT 80 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT--CCSEEEEETTSTTTHHHHHHHHHHTTCCSCEEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHHhhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCEEEEE
Confidence 5899999999999999999999999999999999999999864 79999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l~~ 119 (120)
T 3f6p_A 81 AKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANLRR 119 (120)
T ss_dssp ESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTC
T ss_pred CCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999988764
No 4
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.86 E-value=1.1e-20 Score=166.67 Aligned_cols=116 Identities=27% Similarity=0.392 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPVI 91 (663)
.+||||||++..+..++.+|+..||+|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l~~~--~~dlvllD~~~p~~~g~~~~~~l~~~~~~~~~pii 80 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLSEF--TPDLIVLXIMMPVMDGFTVLKKLQEKEEWKRIPVI 80 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTB--CCSEEEECSCCSSSCHHHHHHHHHTSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEeccCCCCcHHHHHHHHHhcccccCCCEE
Confidence 4899999999999999999999999999999999999999754 79999999999999999999999754 579999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
++|+..+.....++++.||++||.||++.++|..+++++++
T Consensus 81 ~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l~ 121 (122)
T 3gl9_A 81 VLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLLN 121 (122)
T ss_dssp EEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC
T ss_pred EEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999998864
No 5
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.85 E-value=2.1e-20 Score=167.83 Aligned_cols=121 Identities=35% Similarity=0.522 Sum_probs=111.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~dIPV 90 (663)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~lr~~~~~~~~pi 81 (136)
T 3t6k_A 4 PHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQIYKN--LPDALICDVLLPGIDGYTLCKRVRQHPLTKTLPI 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSGGGTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHcCCCcCCccE
Confidence 46899999999999999999999999999999999999999875 7999999999999999999999875 357999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
|++|+..+.....+++++||++||.||++.++|..+++.++++...
T Consensus 82 i~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~~~~ 127 (136)
T 3t6k_A 82 LMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILARTTI 127 (136)
T ss_dssp EEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC---
T ss_pred EEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999987543
No 6
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.84 E-value=8.8e-23 Score=187.38 Aligned_cols=115 Identities=26% Similarity=0.421 Sum_probs=102.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
...+|||||||++..+..++.+|+..||+|+ ++.++.+|++++++. .||+||+|++||++||++++++++. .++||
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~~--~~DlvllDi~mP~~~G~el~~~lr~-~~ipv 82 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARKG--QFDIAIIDVNLDGEPSYPVADILAE-RNVPF 82 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHHC--CSSEEEECSSSSSCCSHHHHHHHHH-TCCSS
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHc-CCCCE
Confidence 3468999999999999999999999999986 789999999999875 7999999999999999999999976 57999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|++|++.+... +.++|+++||.|||+.++|..+++++++
T Consensus 83 I~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~~ 121 (123)
T 2lpm_A 83 IFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQISK 121 (123)
T ss_dssp CCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTCS
T ss_pred EEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHHh
Confidence 99999887654 3467999999999999999999876653
No 7
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.84 E-value=8.7e-20 Score=166.32 Aligned_cols=134 Identities=31% Similarity=0.427 Sum_probs=118.7
Q ss_pred CcccCCCCCCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 006057 1 MTVEHVNGDQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (663)
Q Consensus 1 ~~~~~~~~~~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe 80 (663)
|...+.+...-...++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .|||||+|+.||+++|+++++
T Consensus 1 m~~~~~~~~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~ 78 (153)
T 3hv2_A 1 MSLGELNVATVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLLASR--EVDLVISAAHLPQMDGPTLLA 78 (153)
T ss_dssp -----CCCCCCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHH
T ss_pred CCccccchhhccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHHHcC--CCCEEEEeCCCCcCcHHHHHH
Confidence 556666666566678999999999999999999999999999999999999999875 699999999999999999999
Q ss_pred HHhc-cCCCcEEEEecCCChHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 81 LVGL-EMDLPVIMLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 81 ~Ir~-~~dIPVIILSA~~d~e~v~kAl~aG-A~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
.++. .+.+|||++|+..+...+.+++..| |++||.||++.++|..+++.++++.+.
T Consensus 79 ~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~~~ 136 (153)
T 3hv2_A 79 RIHQQYPSTTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQHS 136 (153)
T ss_dssp HHHHHCTTSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHhHCCCCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHhHH
Confidence 8875 4689999999999999999999999 999999999999999999999987654
No 8
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.84 E-value=4.6e-20 Score=167.34 Aligned_cols=122 Identities=27% Similarity=0.426 Sum_probs=105.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-----
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL----- 84 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~----- 84 (663)
.....+|||||||++..+..++.+|+..||.|..+.++++|++.+... .||+||+|+.||+++|+++++.++.
T Consensus 10 ~~~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~g~~~~~~lr~~~~~~ 87 (143)
T 3m6m_D 10 ARVRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAMAEE--DYDAVIVDLHMPGMNGLDMLKQLRVMQASG 87 (143)
T ss_dssp -----CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHHHHTT
T ss_pred cccccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhchhcc
Confidence 345578999999999999999999999999999999999999999864 7999999999999999999998863
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.+.+|||++|+..+.+.+.+++++||++||.||++.++|..+++.+...
T Consensus 88 ~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 136 (143)
T 3m6m_D 88 MRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAVS 136 (143)
T ss_dssp CCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC--
T ss_pred CCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHHh
Confidence 2468999999999999999999999999999999999999999887644
No 9
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.84 E-value=4.7e-20 Score=164.99 Aligned_cols=120 Identities=18% Similarity=0.382 Sum_probs=108.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLREN---KNKFDLVISDVHMPDMDGFKLLELVGL--EMD 87 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy-~V~tasdg~EALelLre~---k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~d 87 (663)
.++||||||++..+..++.+|+..|| .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.++. .+.
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~~~~~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 81 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTSKGENYNMIFMDVQMPKVDGLLSTKMIRRDLGYT 81 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHHHTCCCSEEEECSCCSSSCHHHHHHHHHHHSCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCChHHHHHHHHhhcCCC
Confidence 47899999999999999999999887 488899999999988751 136999999999999999999999875 357
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+|||++|++.+...+.++++.||++||.||++.++|..+++.++..
T Consensus 82 ~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~ 127 (133)
T 2r25_B 82 SPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCAA 127 (133)
T ss_dssp SCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCTT
T ss_pred CCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999887654
No 10
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.83 E-value=8.5e-20 Score=161.82 Aligned_cols=119 Identities=27% Similarity=0.517 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIP 89 (663)
.++||||||++..+..++.+|+..||. |..+.++.+|++.+... ..||+||+|+.||+++|+++++.++.. +.+|
T Consensus 5 ~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~~p~~~g~~~~~~lr~~~~~~~~p 83 (129)
T 3h1g_A 5 SMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDAN-ADTKVLITDWNMPEMNGLDLVKKVRSDSRFKEIP 83 (129)
T ss_dssp -CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHC-TTCCEEEECSCCSSSCHHHHHHHHHTSTTCTTCC
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCCe
Confidence 579999999999999999999999995 88999999999988764 369999999999999999999999753 5799
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
||++|++.+...+.+++++||++||.||++.++|..+++.++++
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~~ 127 (129)
T 3h1g_A 84 IIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLGT 127 (129)
T ss_dssp EEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHCC
T ss_pred EEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998754
No 11
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.82 E-value=4.8e-19 Score=153.56 Aligned_cols=118 Identities=29% Similarity=0.423 Sum_probs=110.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
++||||||++..+..++.+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 78 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYLNEH--IPDIAIVDLGLPDEDGLSLIRRWRSNDVSLPILVL 78 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHTTCCSCEEEE
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 5899999999999999999999999999999999999999865 6999999999999999999998874 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 79 s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 119 (121)
T 2pl1_A 79 TARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMRRN 119 (121)
T ss_dssp ESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999988754
No 12
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.82 E-value=3.2e-19 Score=154.05 Aligned_cols=117 Identities=26% Similarity=0.435 Sum_probs=109.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFEAE--QPDIIILDLMLPEIDGLEVAKTIRKTSSVPILMLS 79 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHHCCCCEEEEE
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHHhC--CCCEEEEeccCCCCCHHHHHHHHHhCCCCCEEEEe
Confidence 4899999999999999999999999999999999999999865 69999999999999999999999877889999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 118 (120)
T 2a9o_A 80 AKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLRR 118 (120)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHC
T ss_pred cCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHcc
Confidence 999998999999999999999999999999999988765
No 13
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.82 E-value=2.9e-19 Score=163.73 Aligned_cols=120 Identities=30% Similarity=0.471 Sum_probs=112.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPV 90 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~pi 84 (154)
T 3gt7_A 7 AGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT--RPDLIISDVLMPEMDGYALCRWLKGQPDLRTIPV 84 (154)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHTTC--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCE
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCcCCCCE
Confidence 57999999999999999999999999999999999999999754 79999999999999999999999764 67999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
|++|+..+.+.+.++++.||++||.||++.++|..+++.++++.+
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~ 129 (154)
T 3gt7_A 85 ILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGVK 129 (154)
T ss_dssp EEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHTC
T ss_pred EEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
No 14
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.82 E-value=4.8e-19 Score=154.12 Aligned_cols=118 Identities=23% Similarity=0.440 Sum_probs=110.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
.+||||||++..+..++.+|+..||.|..+.++.+++..+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~ii~~s 80 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIMQNQ--SVDLILLDINLPDENGLMLTRALRERSTVGIILVT 80 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHTTCCCEEEEEE
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHHhcC--CCCEEEEeCCCCCCChHHHHHHHHhcCCCCEEEEE
Confidence 5899999999999999999999999999999999999998864 69999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 120 (122)
T 1zgz_A 81 GRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWRI 120 (122)
T ss_dssp SSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988753
No 15
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.82 E-value=3.9e-19 Score=158.18 Aligned_cols=121 Identities=26% Similarity=0.367 Sum_probs=112.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKIENE--FFNLALFXIKLPDMEGTELLEKAHKLRPGMKKIM 80 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSBCSSSBHHHHHHHHHHHCTTSEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCchHHHHHHHHhhCCCCcEEE
Confidence 36899999999999999999999999999999999999999864 6999999999999999999998874 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+|+..+.....+++++||++||.||++.++|..+++.++++...
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 124 (132)
T 3crn_A 81 VTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLDEQEK 124 (132)
T ss_dssp EESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999876544
No 16
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.81 E-value=5.6e-19 Score=155.27 Aligned_cols=119 Identities=24% Similarity=0.422 Sum_probs=110.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
..+||||||++..+..++.+|+..||.|..+.++.++++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (126)
T 1dbw_A 3 DYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFAPDV--RNGVLVTDLRMPDMSGVELLRNLGDLKINIPSIV 80 (126)
T ss_dssp CCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHGGGC--CSEEEEEECCSTTSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 46999999999999999999999999999999999999988754 6999999999999999999998875 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+|+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (126)
T 1dbw_A 81 ITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASEHL 122 (126)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHTTC
T ss_pred EECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 17
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.81 E-value=6e-19 Score=157.97 Aligned_cols=124 Identities=31% Similarity=0.513 Sum_probs=114.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.+....||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 82 (143)
T 3jte_A 3 LAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVITDMKMPKLSGMDILREIKKITPHMAVII 82 (143)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEEESCCSSSCHHHHHHHHHHHCTTCEEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEEeCCCCCCcHHHHHHHHHHhCCCCeEEE
Confidence 46999999999999999999999999999999999999999853357999999999999999999998864 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
+|+..+.+.+.++++.||++||.||++.++|..+++.+++++++.
T Consensus 83 ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~~ 127 (143)
T 3jte_A 83 LTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRKKLL 127 (143)
T ss_dssp EECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999877654
No 18
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.81 E-value=5.9e-19 Score=153.76 Aligned_cols=118 Identities=23% Similarity=0.393 Sum_probs=110.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 81 (123)
T 1xhf_A 4 PHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILSEY--DINLVIMDINLPGKNGLLLARELREQANVALMFLT 81 (123)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHHCCCEEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHhCCCCcEEEEE
Confidence 5899999999999999999999999999999999999999864 69999999999999999999999766789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+..+.....+++++||++||.||++.++|..+++.++++.
T Consensus 82 ~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 121 (123)
T 1xhf_A 82 GRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLSRT 121 (123)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999988653
No 19
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.81 E-value=7.4e-20 Score=173.40 Aligned_cols=120 Identities=23% Similarity=0.357 Sum_probs=112.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 7 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 84 (184)
T 3rqi_A 7 DKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLAGAE--KFEFITVXLHLGNDSGLSLIAPLCDLQPDARILV 84 (184)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHTTS--CCSEEEECSEETTEESHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhhC--CCCEEEEeccCCCccHHHHHHHHHhcCCCCCEEE
Confidence 57999999999999999999999999999999999999999754 7999999999999999999998875 56899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+|++.+.+.+.+++..||++||.||++.++|..+++.++++..
T Consensus 85 lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~~~~~~ 127 (184)
T 3rqi_A 85 LTGYASIATAVQAVKDGADNYLAKPANVESILAALQTNASEVQ 127 (184)
T ss_dssp EESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTTHHHHH
T ss_pred EeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999998887654
No 20
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.81 E-value=4.4e-19 Score=155.17 Aligned_cols=117 Identities=23% Similarity=0.485 Sum_probs=109.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
.+||||||++..+..++.+|+..||.|..+.++.+|+..++.. .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 4 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 81 (124)
T 1srr_A 4 EKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVTKE--RPDLVLLDMKIPGMDGIEILKRMKVIDENIRVIIM 81 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCTTCCHHHHHHHHHHHCTTCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCCEEEE
Confidence 5899999999999999999999999999999999999999865 6999999999999999999998875 568999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 82 s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1srr_A 82 TAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPL 121 (124)
T ss_dssp ESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHSCC
T ss_pred EccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999887654
No 21
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.81 E-value=8.1e-19 Score=153.91 Aligned_cols=120 Identities=28% Similarity=0.506 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDL 88 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~dI 88 (663)
..++||||||++..+..++.+|+..|| .|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~l~~~l~~~~~~~~~ 80 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKLQAG--GYGFVISDWNMPNMDGLELLKTIRAXXAMSAL 80 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHTTC--CCCEEEEESCCSSSCHHHHHHHHHC--CCTTC
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCC
Confidence 357999999999999999999999999 788999999999998753 6999999999999999999999975 3578
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|||++|+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 126 (128)
T 1jbe_A 81 PVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFEKL 126 (128)
T ss_dssp CEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred cEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999988654
No 22
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.81 E-value=3.9e-19 Score=172.48 Aligned_cols=124 Identities=27% Similarity=0.441 Sum_probs=108.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhc-----------CCCceEEEEeCCCCCCCHHHH
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLREN-----------KNKFDLVISDVHMPDMDGFKL 78 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy-~V~tasdg~EALelLre~-----------k~~pDLVIlDv~MPdmDG~eL 78 (663)
...+++||||||++..+..|+.+|+..|| .|..+.++.+|++.+.+. ...|||||+|+.||+++|+++
T Consensus 58 ~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el 137 (206)
T 3mm4_A 58 FLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEA 137 (206)
T ss_dssp TTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHH
T ss_pred ccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHH
Confidence 34578999999999999999999999998 899999999999999863 236999999999999999999
Q ss_pred HHHHhcc-----CCCcEEEEecCC-ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 79 LELVGLE-----MDLPVIMLSGNG-DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 79 Le~Ir~~-----~dIPVIILSA~~-d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
++.|+.. +.+|||++|++. +.+.+.++++.||++||.||++ +|..+++.++++++.
T Consensus 138 ~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~~~~ 199 (206)
T 3mm4_A 138 TREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESKRHL 199 (206)
T ss_dssp HHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC-----
T ss_pred HHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhhhHH
Confidence 9999763 789999999998 7788999999999999999999 999999998876543
No 23
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.81 E-value=1.8e-19 Score=161.90 Aligned_cols=122 Identities=21% Similarity=0.310 Sum_probs=112.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhccCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir~~~dIPVII 92 (663)
+++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.++..+.+|||+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~ii~ 83 (140)
T 3h5i_A 5 DKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVSGG-WYPDLILMDIELGEGMDGVQTALAIQQISELPVVF 83 (140)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCSEEEEESSCSSSCCHHHHHHHHHHHCCCCEEE
T ss_pred CcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHhcC-CCCCEEEEeccCCCCCCHHHHHHHHHhCCCCCEEE
Confidence 57999999999999999999999999999999999999999762 37999999999995 99999999998778999999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+|+..+...+.++++.||++||.||++.++|..+++.++++.+.
T Consensus 84 ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 127 (140)
T 3h5i_A 84 LTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLYEA 127 (140)
T ss_dssp EESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHHHh
Confidence 99999888888999999999999999999999999999987643
No 24
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.81 E-value=5.8e-19 Score=152.67 Aligned_cols=118 Identities=30% Similarity=0.377 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
++||||||++..+..++.+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~ii~~s 79 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAATR--KPDLIILDLGLPDGDGIEFIRDLRQWSAVPVIVLS 79 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHH--CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHhCCCCcEEEEE
Confidence 5899999999999999999999999999999999999988765 69999999999999999999999876789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 80 ~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~ 119 (121)
T 1zh2_A 80 ARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALRRH 119 (121)
T ss_dssp SCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999988754
No 25
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.81 E-value=5.6e-19 Score=158.58 Aligned_cols=119 Identities=21% Similarity=0.378 Sum_probs=111.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++....+|||++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~~~~ii~l 81 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIFSN--KYDLIFLEIILSDGDGWTLCKKIRNVTTCPIVYM 81 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC--CCSEEEEESEETTEEHHHHHHHHHTTCCCCEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHccCCCCCEEEE
Confidence 46999999999999999999999999999999999999999864 6999999999999999999999986668999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 82 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 82 TYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp ESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988764
No 26
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.80 E-value=9.4e-19 Score=155.41 Aligned_cols=123 Identities=24% Similarity=0.326 Sum_probs=110.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc--CCCcE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE--MDLPV 90 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~--~dIPV 90 (663)
...+||||||++..+..++.+|+..||.|..+.++.+|+..+... ..||+||+|+.||+++|+++++.++.. +.+||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~i 84 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLHYQ-KRIGLMITDLRMQPESGLDLIRTIRASERAALSI 84 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHTSTTTTCEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHHhC-CCCcEEEEeccCCCCCHHHHHHHHHhcCCCCCCE
Confidence 457999999999999999999999999999999999999998874 249999999999999999999999764 68999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
|++|+..+.+...++++.||++||.||++.++|..+++++..+...
T Consensus 85 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (136)
T 3hdv_A 85 IVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKIGEG 130 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC----
T ss_pred EEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcCchh
Confidence 9999999999999999999999999999999999999999876543
No 27
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.80 E-value=3.7e-19 Score=158.77 Aligned_cols=123 Identities=20% Similarity=0.328 Sum_probs=112.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~dIP 89 (663)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 5 ~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (140)
T 3grc_A 5 PRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQVARR--PYAAMTVDLNLPDQDGVSLIRALRRDSRTRDLA 82 (140)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHTSGGGTTCE
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCcccCCCC
Confidence 357999999999999999999999999999999999999999875 6999999999999999999999975 46899
Q ss_pred EEEEecCCChHHHH-HHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 90 VIMLSGNGDPKLVM-KGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 90 VIILSA~~d~e~v~-kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
||++|+..+..... +++..||++||.||++.++|..+++.++++....
T Consensus 83 ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~~~~ 131 (140)
T 3grc_A 83 IVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNMAEG 131 (140)
T ss_dssp EEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHHC--
T ss_pred EEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999988877777 8999999999999999999999999999876543
No 28
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.80 E-value=1.7e-19 Score=161.30 Aligned_cols=122 Identities=18% Similarity=0.309 Sum_probs=111.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhc---cCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGL---EMDL 88 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~-~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MP-dmDG~eLLe~Ir~---~~dI 88 (663)
.++||||||++..+..|+.+|+. .||+|..+.++.+|++.+.+. ..||+||+|+.|| +++|+++++.++. .+.+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~~g~~~~~~l~~~~~~~~~ 82 (140)
T 3lua_A 4 DGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIFKDL-DSITLIIMDIAFPVEKEGLEVLSAIRNNSRTANT 82 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTTTTC-CCCSEEEECSCSSSHHHHHHHHHHHHHSGGGTTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCCCCcHHHHHHHHHhCcccCCC
Confidence 57999999999999999999999 999999999999999998761 3799999999999 9999999998875 5789
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++...
T Consensus 83 ~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~ 130 (140)
T 3lua_A 83 PVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKICQR 130 (140)
T ss_dssp CEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC---
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999987654
No 29
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.80 E-value=8.5e-19 Score=152.12 Aligned_cols=116 Identities=26% Similarity=0.466 Sum_probs=106.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
+++||||||++..+..++.+|+..||. +..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~~~--~~dlil~D~~l~~~~g~~~~~~l~~~~~~~~ii 79 (120)
T 1tmy_A 2 GKRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKIDPNAKII 79 (120)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEECSCGGGCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHhhCCCCeEE
Confidence 468999999999999999999999999 55899999999999875 6999999999999999999998864 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
++|+..+.....++++.||++||.||++.++|..+++.++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (120)
T 1tmy_A 80 VCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKVS 119 (120)
T ss_dssp EEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998764
No 30
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.80 E-value=1.1e-18 Score=158.73 Aligned_cols=122 Identities=18% Similarity=0.300 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc-----CCCceEEEEeCCCCCCCHHHHHHHHhcc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLREN-----KNKFDLVISDVHMPDMDGFKLLELVGLE 85 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~-----k~~pDLVIlDv~MPdmDG~eLLe~Ir~~ 85 (663)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.++..
T Consensus 7 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~~~~~~~dlillD~~lp~~~g~~l~~~l~~~ 86 (149)
T 1i3c_A 7 PPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEYENSPRPNLILLDLNLPKKDGREVLAEIKQN 86 (149)
T ss_dssp CCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGGTTCCCCSEEEECSCCSSSCHHHHHHHHHHC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhccccccCCCCCEEEEeCCCCCCcHHHHHHHHHhC
Confidence 457999999999999999999998887 888999999999998742 1369999999999999999999999764
Q ss_pred ---CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 86 ---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 86 ---~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+.+|||++|+..+...+.++++.||++||.||++.++|..+++.+++..
T Consensus 87 ~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 138 (149)
T 1i3c_A 87 PDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESFW 138 (149)
T ss_dssp TTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999987653
No 31
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.80 E-value=4.8e-19 Score=156.14 Aligned_cols=121 Identities=28% Similarity=0.424 Sum_probs=103.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
.++|||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (130)
T 3eod_A 6 VGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELLGGF--TPDLMICDIAMPRMNGLKLLEHIRNRGDQTPVL 83 (130)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHTTC--CCSEEEECCC-----CHHHHHHHHHTTCCCCEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 467999999999999999999999999999999999999999754 6999999999999999999998874 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhhc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRKK 135 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPv-s~eeL~~~~q~Vlrr~~ 135 (663)
++|+..+.....++++.||++||.||+ +.++|..+++.+++++.
T Consensus 84 ~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~~~~ 128 (130)
T 3eod_A 84 VISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLYPSM 128 (130)
T ss_dssp EEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC---
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhchhh
Confidence 999999999999999999999999999 89999999999987653
No 32
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.80 E-value=5.6e-19 Score=153.77 Aligned_cols=117 Identities=23% Similarity=0.425 Sum_probs=103.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPVI 91 (663)
.+||||||++..+..++.+|+..||.|..+.++.+|+..++.. .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 79 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN--KPDLILMDIQLPEISGLEVTKWLKEDDDLAHIPVV 79 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHHHSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHcCccccCCcEE
Confidence 4899999999999999999999999999999999999998865 69999999999999999999998753 579999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
++|+..+.....++++.||++||.||++.++|..+++.++++
T Consensus 80 ~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (124)
T 1mb3_A 80 AVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLLER 121 (124)
T ss_dssp EEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHHSC
T ss_pred EEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHhc
Confidence 999998888889999999999999999999999999988754
No 33
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.80 E-value=5e-19 Score=155.45 Aligned_cols=119 Identities=35% Similarity=0.539 Sum_probs=109.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDL 88 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dI 88 (663)
..++||||||++..+..++.+|+..|| .|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~~ 82 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQN--PHHLVISDFNMPKMDGLGLLQAVRANPATKKA 82 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHHHTS--CCSEEEECSSSCSSCHHHHHHHHTTCTTSTTC
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHHHcC--CCCEEEEeCCCCCCCHHHHHHHHhcCccccCC
Confidence 357899999999999999999999899 788999999999999864 69999999999999999999999764 578
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|||++|+..+...+.++++.||++||.||++.++|..+++.++++
T Consensus 83 ~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (129)
T 1p6q_A 83 AFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFGA 127 (129)
T ss_dssp EEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHHC
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999988764
No 34
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.80 E-value=1e-18 Score=173.22 Aligned_cols=122 Identities=34% Similarity=0.513 Sum_probs=113.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPV 90 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPV 90 (663)
...++||||||++..+..|+.+|+..||+|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 21 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~i 98 (250)
T 3r0j_A 21 TPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRARET--RPDAVILDVXMPGMDGFGVLRRLRADGIDAPA 98 (250)
T ss_dssp CSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCE
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCE
Confidence 3468999999999999999999999999999999999999999875 69999999999999999999998754 68999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
|++|+..+...+.+++++||++||.||++.++|..+++.++++..
T Consensus 99 i~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~~~ 143 (250)
T 3r0j_A 99 LFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRRAG 143 (250)
T ss_dssp EEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999998753
No 35
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.80 E-value=1.3e-18 Score=155.26 Aligned_cols=123 Identities=24% Similarity=0.352 Sum_probs=111.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC---CCceEEEEeCCCCCCCHHHHHHHHhc---
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENK---NKFDLVISDVHMPDMDGFKLLELVGL--- 84 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k---~~pDLVIlDv~MPdmDG~eLLe~Ir~--- 84 (663)
..++||||||++..+..++.+|+..++ .|..+.++.+|++.+.+.. ..||+||+|+.||+++|+++++.++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~ 87 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYAAGRWPSIICIDINMPGINGWELIDLFKQHFQ 87 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHTSSCCCSEEEEESSCSSSCHHHHHHHHHHHCG
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhccCCCCCEEEEcCCCCCCCHHHHHHHHHHhhh
Confidence 467999999999999999999999999 8999999999999998611 37999999999999999999998875
Q ss_pred --cCCCcEEEEecCCChHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 85 --EMDLPVIMLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 85 --~~dIPVIILSA~~d~e~v~kAl~aG-A~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
.+.+|||++|+..+.....+++..| |++||.||++.++|..+++++..+..
T Consensus 88 ~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~~~~ 141 (146)
T 3ilh_A 88 PMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLNEGH 141 (146)
T ss_dssp GGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHCC--
T ss_pred hccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHHhcc
Confidence 4689999999999999999999999 99999999999999999999886554
No 36
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.80 E-value=7.3e-19 Score=156.30 Aligned_cols=121 Identities=23% Similarity=0.345 Sum_probs=113.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+++. .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (137)
T 3hdg_A 7 ALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLH--APDVIITDIRMPKLGGLEMLDRIKAGGAKPYVIV 84 (137)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTTCCCEEEE
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEE
Confidence 57999999999999999999999999999999999999999875 6999999999999999999998875 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+|+..+.+.+.+++++||++||.||++.++|..++++++++...
T Consensus 85 ~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 128 (137)
T 3hdg_A 85 ISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIKLA 128 (137)
T ss_dssp CCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999987654
No 37
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.80 E-value=1.6e-18 Score=157.41 Aligned_cols=121 Identities=26% Similarity=0.414 Sum_probs=110.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHh-------cCCCceEEEEeCCCCCCCHHHHHHHHhc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRE-------NKNKFDLVISDVHMPDMDGFKLLELVGL 84 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre-------~k~~pDLVIlDv~MPdmDG~eLLe~Ir~ 84 (663)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.++. ....||+||+|+.||+++|+++++.++.
T Consensus 4 ~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~dliilD~~l~~~~g~~~~~~lr~ 83 (152)
T 3heb_A 4 SVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSGRVSAGRAQLVLLDLNLPDMTGIDILKLVKE 83 (152)
T ss_dssp -CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTSSSGGGTTCBEEEEECSBCSSSBHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhccccccccccCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 57999999999999999999999998 89999999999999961 1347999999999999999999999976
Q ss_pred ---cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 85 ---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 85 ---~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
.+.+|||++|+..+...+.++++.||++||.||++.++|..+++++.+..
T Consensus 84 ~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 136 (152)
T 3heb_A 84 NPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFF 136 (152)
T ss_dssp STTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred cccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 36799999999999999999999999999999999999999999997654
No 38
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.80 E-value=1.5e-18 Score=153.05 Aligned_cols=121 Identities=19% Similarity=0.325 Sum_probs=111.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC-----CCceEEEEeCCCCCCCHHHHHHHHhcc-
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENK-----NKFDLVISDVHMPDMDGFKLLELVGLE- 85 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k-----~~pDLVIlDv~MPdmDG~eLLe~Ir~~- 85 (663)
+++||||||++..+..++.+|+..|+ .|..+.++.+|++.+.+.. ..||+||+|+.||+++|+++++.++..
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~d~~~~~~~g~~~~~~l~~~~ 81 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILLXLNLPKKDGREVLAEIKSDP 81 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEECSSCSSSCHHHHHHHHHHST
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEEecCCCcccHHHHHHHHHcCc
Confidence 57999999999999999999999998 9999999999999997521 379999999999999999999999765
Q ss_pred --CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 86 --MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 86 --~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+.+|||++|+..+.+.+.++++.||++||.||++.++|..++++++++.
T Consensus 82 ~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 82 TLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp TGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred ccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999998765
No 39
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.80 E-value=1.1e-18 Score=155.52 Aligned_cols=120 Identities=23% Similarity=0.359 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
++||||||++..+..++.+|+..+ +.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 4 ~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~~~--~~dlvilD~~lp~~~g~~~~~~l~~~~~~~~ii 81 (133)
T 3b2n_A 4 TSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIEEY--NPNVVILDIEMPGMTGLEVLAEIRKKHLNIKVI 81 (133)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHTTCSCEEE
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHHHCCCCcEE
Confidence 589999999999999999999876 5677899999999999865 6999999999999999999998875 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
++|+..+...+.++++.||++||.||++.++|..+++.++++..+
T Consensus 82 ~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 126 (133)
T 3b2n_A 82 IVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNNGEKE 126 (133)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC----
T ss_pred EEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHcCCCc
Confidence 999999999999999999999999999999999999999876543
No 40
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.80 E-value=1e-18 Score=157.00 Aligned_cols=120 Identities=23% Similarity=0.383 Sum_probs=111.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDL 88 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~--V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~dI 88 (663)
.++||||||++..+..++.+|+..|+. |..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~lr~~~~~~~~ 82 (144)
T 3kht_A 5 SKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSAVRKPGANQHT 82 (144)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHHHHSSSTTTTC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcccccCC
Confidence 579999999999999999999999987 88999999999999764 7999999999999999999999976 4689
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhhc
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRKK 135 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPv-s~eeL~~~~q~Vlrr~~ 135 (663)
|||++|+..+.+.+.+++++||++||.||+ +.++|..+++.++++..
T Consensus 83 pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~~ 130 (144)
T 3kht_A 83 PIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYWL 130 (144)
T ss_dssp CEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 99999999999998753
No 41
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.80 E-value=3.5e-19 Score=159.21 Aligned_cols=121 Identities=20% Similarity=0.249 Sum_probs=111.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhc-cCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPd--mDG~eLLe~Ir~-~~dIPV 90 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+ ++|+++++.++. .+.+||
T Consensus 6 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~~~g~~~~~~l~~~~~~~~i 83 (136)
T 3kto_A 6 HPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQISD--DAIGMIIEAHLEDKKDSGIELLETLVKRGFHLPT 83 (136)
T ss_dssp -CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSCCCT--TEEEEEEETTGGGBTTHHHHHHHHHHHTTCCCCE
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHhcc--CCCEEEEeCcCCCCCccHHHHHHHHHhCCCCCCE
Confidence 46999999999999999999999999999999999999988654 7999999999999 999999998875 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
|++|+..+.+.+.++++.||++||.||++.++|..++++++++...
T Consensus 84 i~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~~~ 129 (136)
T 3kto_A 84 IVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGAKE 129 (136)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHHC-
T ss_pred EEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999999999999987654
No 42
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.80 E-value=1.4e-18 Score=153.92 Aligned_cols=120 Identities=30% Similarity=0.497 Sum_probs=110.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVII 92 (663)
+.+||||||++..+..++.+|...||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 80 (136)
T 1mvo_A 3 NKKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAETE--KPDLIVLDVMLPKLDGIEVCKQLRQQKLMFPILM 80 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHhhc--CCCEEEEecCCCCCCHHHHHHHHHcCCCCCCEEE
Confidence 35899999999999999999999999999999999999998865 69999999999999999999988754 6799999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+|+..+.....++++.||++||.||++.++|..+++.++++..
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (136)
T 1mvo_A 81 LTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRRSE 123 (136)
T ss_dssp EECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHTC-
T ss_pred EECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHhhc
Confidence 9999888888899999999999999999999999999987643
No 43
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.80 E-value=1.2e-18 Score=158.20 Aligned_cols=126 Identities=22% Similarity=0.311 Sum_probs=112.9
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EM 86 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~ 86 (663)
.....+|||||||++..+..|+.+|+..+ +.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+
T Consensus 16 ~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~ 93 (150)
T 4e7p_A 16 PRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLLEKE--SVDIAILDVEMPVKTGLEVLEWIRSEKL 93 (150)
T ss_dssp ----CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHTTS--CCSEEEECSSCSSSCHHHHHHHHHHTTC
T ss_pred CCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHhhcc--CCCEEEEeCCCCCCcHHHHHHHHHHhCC
Confidence 33446799999999999999999999887 7899999999999999764 6999999999999999999998875 46
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 87 dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
.+|||++|+..+.+.+.++++.||++||.||++.++|..+++.++++++..
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 144 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEGRKEY 144 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTTCCEE
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcCCEEc
Confidence 899999999999999999999999999999999999999999999876543
No 44
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.79 E-value=1.1e-18 Score=156.83 Aligned_cols=120 Identities=27% Similarity=0.481 Sum_probs=111.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvllD~~l~~~~g~~l~~~l~~~~~~~~ii~l 82 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIERS--KPQLIILDLKLPDMSGEDVLDWINQNDIPTSVIIA 82 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHHHH--CCSEEEECSBCSSSBHHHHHHHHHHTTCCCEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCEEEE
Confidence 3899999999999999999999999999999999999999875 6999999999999999999998875 467999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
|+..+.+.+.++++.||++||.||++.++|..+++.++++...
T Consensus 83 s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~~ 125 (137)
T 3cfy_A 83 TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKL 125 (137)
T ss_dssp ESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999876543
No 45
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.79 E-value=2.4e-18 Score=152.96 Aligned_cols=122 Identities=25% Similarity=0.359 Sum_probs=111.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRR-CQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMD 87 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~-~gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~d 87 (663)
..++||||||++..+..++.+|+. .||. |..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.
T Consensus 7 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ 84 (143)
T 3cnb_A 7 NDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLHTV--KPDVVMLDLMMVGMDGFSICHRIKSTPATAN 84 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHHHT--CCSEEEEETTCTTSCHHHHHHHHHTSTTTTT
T ss_pred CCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHHhc--CCCEEEEecccCCCcHHHHHHHHHhCccccC
Confidence 467999999999999999999999 8999 89999999999999875 6999999999999999999999976 467
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+|||++|+..+.....++++.||++||.||++.++|..++++++++...
T Consensus 85 ~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~~ 133 (143)
T 3cnb_A 85 IIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKA 133 (143)
T ss_dssp SEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHTTC-
T ss_pred CcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999987643
No 46
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.79 E-value=5.7e-19 Score=155.05 Aligned_cols=118 Identities=23% Similarity=0.294 Sum_probs=106.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~dIPV 90 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~~~i 80 (127)
T 3i42_A 3 LQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAMSTR--GYDAVFIDLNLPDTSGLALVKQLRALPMEKTSKF 80 (127)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHSCCSSCCEE
T ss_pred cceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhhccCCCCE
Confidence 46999999999999999999999999999999999999999875 6999999999999999999999875 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++|+..+... .+++..||++||.||++.++|..++++..++.
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~~ 123 (127)
T 3i42_A 81 VAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEGHH 123 (127)
T ss_dssp EEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC---
T ss_pred EEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhccC
Confidence 99999988877 88999999999999999999999999877654
No 47
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.79 E-value=4.3e-19 Score=156.90 Aligned_cols=121 Identities=19% Similarity=0.269 Sum_probs=109.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
+|||||||++..+..++.+|+..||.+. .+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (134)
T 3f6c_A 2 LNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRVETL--KPDIVIIDVDIPGVNGIQVLETLRKRQYSGIIII 79 (134)
T ss_dssp EEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTTCCSEEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHHHhc--CCCEEEEecCCCCCChHHHHHHHHhcCCCCeEEE
Confidence 7999999999999999999999999998 899999999999875 6999999999999999999998874 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
+|+..+.....++++.||++||.||++.++|..+++.++++..+.
T Consensus 80 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~~ 124 (134)
T 3f6c_A 80 VSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNGYCYF 124 (134)
T ss_dssp EECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTTCCBC
T ss_pred EeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCCCEEe
Confidence 999999889999999999999999999999999999999876554
No 48
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.79 E-value=8.8e-19 Score=167.76 Aligned_cols=124 Identities=28% Similarity=0.394 Sum_probs=112.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI 88 (663)
.++..++||||||++..+..++.+|...||.|. .+.++.+|++.+... .||+||+|+.||+++|+++++.++.....
T Consensus 9 ~~~m~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~~~--~~dlvi~D~~~p~~~g~~~~~~l~~~~~~ 86 (205)
T 1s8n_A 9 DAAVPRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAELH--KPDLVIMDVKMPRRDGIDAASEIASKRIA 86 (205)
T ss_dssp --CCCCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHTTCS
T ss_pred ccCCCccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhhc--CCCEEEEeCCCCCCChHHHHHHHHhcCCC
Confidence 344457999999999999999999999999988 899999999999875 69999999999999999999999876667
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
|||++|++.+.+.+.+++..||++||.||++.++|..+++.++++..
T Consensus 87 pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 133 (205)
T 1s8n_A 87 PIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVSRFR 133 (205)
T ss_dssp CEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred CEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999987654
No 49
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.79 E-value=1e-18 Score=154.39 Aligned_cols=118 Identities=28% Similarity=0.479 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPV 90 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~dIPV 90 (663)
++||||||++..+..++.+|+.. +|.+. .+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~~i 80 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLEEK--RPDILLLDIIMPHLDGLAVLERIRAGFEHQPNV 80 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHHCSSCCEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHhcCCCCCcE
Confidence 68999999999999999999987 88875 799999999999865 6999999999999999999998875 357899
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++|+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 124 (130)
T 1dz3_A 81 IMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYGKT 124 (130)
T ss_dssp EEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHHCC
T ss_pred EEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999988654
No 50
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.79 E-value=1.5e-18 Score=153.20 Aligned_cols=119 Identities=28% Similarity=0.330 Sum_probs=104.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPV 90 (663)
.++||||||++..+..++.+|+ .+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 4 ~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~~pi 80 (133)
T 3nhm_A 4 KPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQALAH--PPDVLISDVNMDGMDGYALCGHFRSEPTLKHIPV 80 (133)
T ss_dssp -CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHHHHS--CCSEEEECSSCSSSCHHHHHHHHHHSTTTTTCCE
T ss_pred CCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhCCccCCCCE
Confidence 5799999999999999999999 799999999999999999875 69999999999999999999998763 47999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
|++|+..+... .+++..||++||.||++.++|..+++.++++...
T Consensus 81 i~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~~~ 125 (133)
T 3nhm_A 81 IFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARAEA 125 (133)
T ss_dssp EEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHHC-
T ss_pred EEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhhcc
Confidence 99999888777 8999999999999999999999999999987654
No 51
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.79 E-value=1.6e-19 Score=185.93 Aligned_cols=118 Identities=21% Similarity=0.300 Sum_probs=108.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MP-dmDG~eLLe~Ir~~~dIPVI 91 (663)
+.+||||||++..+..++.+|+..||.|. .+.++.+|++.+.+. .|||||+|+.|| +|||+++++.|+...++|||
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~~~~--~~dlvl~D~~MPd~mdG~e~~~~ir~~~~~piI 237 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAVTRR--TPGLVLADIQLADGSSGIDAVKDILGRMDVPVI 237 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHC--CCSEEEEESCCTTSCCTTTTTHHHHHHTTCCEE
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHHHhC--CCCEEEEcCCCCCCCCHHHHHHHHHhcCCCCEE
Confidence 45899999999999999999999999999 999999999999875 699999999999 79999999999866699999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
++|++.+ ...+|+++||++||.||++.++|..+++.++++..
T Consensus 238 ~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~~~ 279 (286)
T 3n0r_A 238 FITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFFHP 279 (286)
T ss_dssp EEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHHSC
T ss_pred EEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 9999853 46779999999999999999999999999997753
No 52
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.79 E-value=1.5e-18 Score=156.16 Aligned_cols=121 Identities=23% Similarity=0.351 Sum_probs=112.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~dIP 89 (663)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 7 ~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 84 (147)
T 2zay_A 7 KWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVKT--HPHLIITEANMPKISGMDLFNSLKKNPQTASIP 84 (147)
T ss_dssp -CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHTSTTTTTSC
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHcC--CCCEEEEcCCCCCCCHHHHHHHHHcCcccCCCC
Confidence 468999999999999999999999999999999999999999875 6999999999999999999999975 46899
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
||++|+..+.....++++.||++||.||++.++|..+++.++++.+
T Consensus 85 ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~ 130 (147)
T 2zay_A 85 VIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLY 130 (147)
T ss_dssp EEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654
No 53
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.79 E-value=2.6e-18 Score=153.43 Aligned_cols=121 Identities=20% Similarity=0.361 Sum_probs=111.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcC--------CCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENK--------NKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k--------~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
.++||||||++..+..++.+|+..|| .|..+.++.+|++.+.... ..||+||+|+.||+++|+++++.++
T Consensus 6 ~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~ 85 (149)
T 1k66_A 6 TQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILLDLNLPGTDGREVLQEIK 85 (149)
T ss_dssp TSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEECSCCSSSCHHHHHHHHT
T ss_pred CccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEEECCCCCCCHHHHHHHHH
Confidence 57899999999999999999999998 8999999999999998521 3799999999999999999999998
Q ss_pred cc---CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 84 LE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 84 ~~---~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
.. +.+|||++|+..+.....++++.|+++||.||++.++|..+++.++++.
T Consensus 86 ~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 86 QDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp TSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred hCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 65 5799999999999999999999999999999999999999999998765
No 54
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.79 E-value=1.6e-18 Score=159.30 Aligned_cols=119 Identities=24% Similarity=0.350 Sum_probs=109.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
.++||||||++..+..|+.+|+..||.|. .+.++.+|++.+.+....|||||+|+.||+++|+++++.++. .+.+|||
T Consensus 36 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliilD~~l~~~~g~~~~~~lr~~~~~~~ii 115 (157)
T 3hzh_A 36 PFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTLXITMPKMDGITCLSNIMEFDKNARVI 115 (157)
T ss_dssp ECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEECSSCSSSCHHHHHHHHHHHCTTCCEE
T ss_pred ceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEEeccCCCccHHHHHHHHHhhCCCCcEE
Confidence 46999999999999999999999999998 999999999999875225899999999999999999998874 5689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
++|+..+.+.+.+++++||++||.||++.++|..+++.+++
T Consensus 116 ~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 116 MISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp EEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTTC
T ss_pred EEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999988764
No 55
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.79 E-value=2.7e-18 Score=152.43 Aligned_cols=122 Identities=20% Similarity=0.314 Sum_probs=113.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccCCCcE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MP-dmDG~eLLe~Ir~~~dIPV 90 (663)
..++||||||++..+..++.+|+..||.|. .+.++.+|++.+... .||+||+|+.|| +++|+++++.++..+.+||
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~~~--~~dlii~d~~~~~~~~g~~~~~~l~~~~~~~i 85 (140)
T 3cg0_A 8 DLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAPDL--RPDIALVDIMLCGALDGVETAARLAAGCNLPI 85 (140)
T ss_dssp CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH--CCSEEEEESSCCSSSCHHHHHHHHHHHSCCCE
T ss_pred CCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHHhC--CCCEEEEecCCCCCCCHHHHHHHHHhCCCCCE
Confidence 467999999999999999999999999999 599999999999875 699999999998 7999999998876588999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
|++|+..+.....++++.||++||.||++.++|..+++.++++...
T Consensus 86 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 131 (140)
T 3cg0_A 86 IFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKKKL 131 (140)
T ss_dssp EEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999999999999999999999987643
No 56
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.79 E-value=8.5e-19 Score=157.89 Aligned_cols=123 Identities=16% Similarity=0.272 Sum_probs=111.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLP 89 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~g-y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIP 89 (663)
....+||||||++..+..|+.+|+..| |.|..+.++.+++..+.+....|||||+|+.||+++|+++++.++. .+.+|
T Consensus 18 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~~~~~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ 97 (146)
T 4dad_A 18 QGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRTDGLDAFDILMIDGAALDTAELAAIEKLSRLHPGLT 97 (146)
T ss_dssp GGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCHHHHTTCSEEEEECTTCCHHHHHHHHHHHHHCTTCE
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHHhcCCCCCEEEEeCCCCCccHHHHHHHHHHhCCCCc
Confidence 446899999999999999999999998 9999999999888776541027999999999999999999998864 46899
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
||++|+..+.+.+.+++++||++||.||++.++|..+++.++++.
T Consensus 98 ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 142 (146)
T 4dad_A 98 CLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQC 142 (146)
T ss_dssp EEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999999999999998765
No 57
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.78 E-value=2.6e-18 Score=153.99 Aligned_cols=119 Identities=30% Similarity=0.439 Sum_probs=106.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPVI 91 (663)
++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 4 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 81 (138)
T 3c3m_A 4 YTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEALNAT--PPDLVLLDIMMEPMDGWETLERIKTDPATRDIPVL 81 (138)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHhcc--CCCEEEEeCCCCCCCHHHHHHHHHcCcccCCCCEE
Confidence 5899999999999999999999999999999999999999865 69999999999999999999998753 478999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
++|+.........++.+|+++||.||++.++|..+++.++++..
T Consensus 82 ~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~~~~ 125 (138)
T 3c3m_A 82 MLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLARRH 125 (138)
T ss_dssp EEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHSCC-
T ss_pred EEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHHHhh
Confidence 99998776666666677789999999999999999999886543
No 58
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.78 E-value=4.3e-19 Score=155.08 Aligned_cols=118 Identities=25% Similarity=0.399 Sum_probs=109.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPVI 91 (663)
++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+|||
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~ii 80 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEP--WPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVV 80 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTCSSS--CCSEEEEESEETTEEHHHHHHHHHTSTTTTTSCEE
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhcc--CCCEEEEecCCCCCCHHHHHHHHHhCcccCCCCEE
Confidence 5899999999999999999999999999999999999888643 69999999999999999999999754 579999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++|+..+.....++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 123 (127)
T 2jba_A 81 MLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMRRI 123 (127)
T ss_dssp EEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHHCC
T ss_pred EEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHhcc
Confidence 9999999889999999999999999999999999999988754
No 59
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.78 E-value=4.2e-18 Score=154.66 Aligned_cols=126 Identities=24% Similarity=0.365 Sum_probs=111.3
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EM 86 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~--V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~ 86 (663)
..+.+.|||||||++..+..|+.+|+..++. |..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+
T Consensus 11 ~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~ 88 (152)
T 3eul_A 11 PQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAH--LPDVALLDYRMPGMDGAQVAAAVRSYEL 88 (152)
T ss_dssp ---CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHHH--CCSEEEEETTCSSSCHHHHHHHHHHTTC
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhcCC
Confidence 4456789999999999999999999998854 55899999999999875 6999999999999999999998874 46
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 87 dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
.+|||++|+..+...+.++++.||++||.||++.++|..+++.++++....
T Consensus 89 ~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~~~~~ 139 (152)
T 3eul_A 89 PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKGRDVV 139 (152)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHCC---
T ss_pred CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcCCeee
Confidence 899999999999999999999999999999999999999999999876554
No 60
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.78 E-value=2.3e-18 Score=173.71 Aligned_cols=122 Identities=29% Similarity=0.379 Sum_probs=112.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIP 89 (663)
..++||||||++..+..+...|+..+|.|..+.++.+|++.+.+. ..||+||+|+.||++||+++++.++.. ..+|
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~~~-~~~dlvllD~~mP~~dG~~l~~~lr~~~~~~~~~ 201 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLEQH-PAIRLVLVDYYMPEIDGISLVRMLRERYSKQQLA 201 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHC-TTEEEEEECSCCSSSCHHHHHHHHHHHCCTTTSE
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHhcC-CCCCEEEEcCCCCCCCHHHHHHHHHhccCCCCCe
Confidence 357999999999999999999999999999999999999999764 248999999999999999999999753 3689
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
||++|+..+.....+++++||++||.||++.++|..++++++++..
T Consensus 202 ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 247 (259)
T 3luf_A 202 IIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALE 247 (259)
T ss_dssp EEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHh
Confidence 9999999999999999999999999999999999999999987654
No 61
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.78 E-value=1.5e-18 Score=173.43 Aligned_cols=120 Identities=28% Similarity=0.428 Sum_probs=113.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
.++||||||++..+..|+.+|+..+|.|..+.++.+|++.+... .|||||+|+.||+++|+++++.++..+.+|||++
T Consensus 37 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~DlvllD~~lp~~~G~~l~~~lr~~~~~~iI~l 114 (249)
T 3q9s_A 37 EQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKARED--HPDLILLDLGLPDFDGGDVVQRLRKNSALPIIVL 114 (249)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHHHS--CCSEEEEECCSCHHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHHcCCCCCEEEE
Confidence 46899999999999999999999999999999999999999875 6999999999999999999999988888999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
|+..+.+.+.+++++||++||.||++.++|..+++.++++..
T Consensus 115 t~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~~~ 156 (249)
T 3q9s_A 115 TARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQRT 156 (249)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCCCC
T ss_pred ECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999987653
No 62
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.78 E-value=4.6e-18 Score=149.84 Aligned_cols=120 Identities=24% Similarity=0.387 Sum_probs=102.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC---CCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM---DLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~---dIP 89 (663)
..++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++... ..+
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~~ 82 (132)
T 3lte_A 5 QSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKLSTF--EPAIMTLDLSMPKLDGLDVIRSLRQNKVANQPK 82 (132)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHT--CCSEEEEESCBTTBCHHHHHHHHHTTTCSSCCE
T ss_pred CCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhcCccCCCe
Confidence 357999999999999999999999999999999999999999865 799999999999999999999997653 345
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
||+++.... ..+.++++.||++||.||++.++|..+++++..+..
T Consensus 83 ii~~~~~~~-~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 127 (132)
T 3lte_A 83 ILVVSGLDK-AKLQQAVTEGADDYLEKPFDNDALLDRIHDLVNEGH 127 (132)
T ss_dssp EEEECCSCS-HHHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC---
T ss_pred EEEEeCCCh-HHHHHHHHhChHHHhhCCCCHHHHHHHHHHHcCCCC
Confidence 555555544 478899999999999999999999999999887654
No 63
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.78 E-value=8.4e-19 Score=156.82 Aligned_cols=122 Identities=22% Similarity=0.318 Sum_probs=103.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPV 90 (663)
.++||||||++..+..++.+|+.. |.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~~~i 79 (140)
T 3n53_A 3 LKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQIDHH--HPDLVILDMDIIGENSPNLCLKLKRSKGLKNVPL 79 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHHHHH--CCSEEEEETTC------CHHHHHHTSTTCTTCCE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHcCcccCCCCE
Confidence 468999999999999999999988 9999999999999999875 69999999999999999999999765 68999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccch
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKIDA 138 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~~ 138 (663)
|++|+..+.+.+.++++.||++||.||++.++|..+++.+++++.+..
T Consensus 80 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~~~~ 127 (140)
T 3n53_A 80 ILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRTQNYYS 127 (140)
T ss_dssp EEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhhHHHHH
Confidence 999999988888999999999999999999999999999998876543
No 64
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.78 E-value=1.7e-19 Score=160.72 Aligned_cols=119 Identities=19% Similarity=0.117 Sum_probs=109.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPV 90 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~g-y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPV 90 (663)
..++||||||++..+..++.+|+..| |.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 13 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l~~~--~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~i 90 (135)
T 3snk_A 13 KRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPPADT--RPGIVILDLGGGDLLGKPGIVEARALWATVPL 90 (135)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCCTTC--CCSEEEEEEETTGGGGSTTHHHHHGGGTTCCE
T ss_pred CCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHhcc--CCCEEEEeCCCCCchHHHHHHHHHhhCCCCcE
Confidence 35699999999999999999999999 9999999999999988653 79999999999999999999988754 58999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|++|+..+.+...++++.||++||.||++.++|..+++.++++
T Consensus 91 i~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~~ 133 (135)
T 3snk_A 91 IAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHDTG 133 (135)
T ss_dssp EEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC--
T ss_pred EEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999887754
No 65
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.78 E-value=1.4e-18 Score=154.98 Aligned_cols=122 Identities=24% Similarity=0.403 Sum_probs=112.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~dIP 89 (663)
..++||||||++..+..++.+|+..||+|..+.++.+|++.++.. .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlii~d~~l~~~~g~~~~~~l~~~~~~~~~p 83 (142)
T 3cg4_A 6 HKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLKKG--FSGVVLLDIMMPGMDGWDTIRAILDNSLEQGIA 83 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTC--CCEEEEEESCCSSSCHHHHHHHHHHTTCCTTEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHhhcccCCCC
Confidence 467999999999999999999999999999999999999999864 6999999999999999999998875 46799
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
||++|+..+.....++++.||++||.||++.++|..++++++++.+.
T Consensus 84 ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~~~ 130 (142)
T 3cg4_A 84 IVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFVRN 130 (142)
T ss_dssp EEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHHhh
Confidence 99999998888888999999999999999999999999999987644
No 66
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.78 E-value=2.6e-18 Score=152.86 Aligned_cols=119 Identities=24% Similarity=0.420 Sum_probs=106.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cC----C
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EM----D 87 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~----d 87 (663)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.+... +|+||+|+.||+++|+++++.++. .+ .
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~---~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~ 82 (136)
T 1dcf_A 6 TGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHE---HKVVFMDVCMPGVENYQIALRIHEKFTKQRHQ 82 (136)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHCCTT---CSEEEEECCSSTTTTTHHHHHHHHHHC-CCSC
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcc---CCEEEEeCCCCCCcHHHHHHHHHHhhhhccCC
Confidence 468999999999999999999999999999999999999988542 399999999999999999998863 22 3
Q ss_pred C-cEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 88 L-PVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 88 I-PVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
. |||++|+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 83 ~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 130 (136)
T 1dcf_A 83 RPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLEPR 130 (136)
T ss_dssp CCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHSCC
T ss_pred CceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhchh
Confidence 3 5788999999999999999999999999999999999999988654
No 67
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.77 E-value=8.1e-18 Score=153.11 Aligned_cols=122 Identities=28% Similarity=0.451 Sum_probs=112.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
..++||||||++..+..++.+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 6 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ii 83 (154)
T 2rjn_A 6 KNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEALKGT--SVQLVISDMRMPEMGGEVFLEQVAKSYPDIERV 83 (154)
T ss_dssp SCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHHTTS--CCSEEEEESSCSSSCHHHHHHHHHHHCTTSEEE
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 467999999999999999999999999999999999999999764 6999999999999999999998875 4689999
Q ss_pred EEecCCChHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 92 MLSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aG-A~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
++|+..+.....+++..| |++||.||++.++|..+++.++++...
T Consensus 84 ~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~~~~ 129 (154)
T 2rjn_A 84 VISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQLAFL 129 (154)
T ss_dssp EEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 999999989999999998 999999999999999999999987654
No 68
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.77 E-value=5.7e-18 Score=163.43 Aligned_cols=120 Identities=30% Similarity=0.502 Sum_probs=112.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVII 92 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++.. +.+|||+
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~lr~~~~~~~ii~ 79 (225)
T 1kgs_A 2 NVRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMALNE--PFDVVILDIMLPVHDGWEILKSMRESGVNTPVLM 79 (225)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999999999999999999999999865 69999999999999999999988754 6899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+|+..+...+.+++.+||++||.||++.++|..+++.++++..
T Consensus 80 ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~~ 122 (225)
T 1kgs_A 80 LTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKS 122 (225)
T ss_dssp EESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHHHC
T ss_pred EeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999998753
No 69
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.77 E-value=8.3e-18 Score=149.31 Aligned_cols=121 Identities=26% Similarity=0.392 Sum_probs=110.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhc-cCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGL-EMD 87 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~-~~d 87 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. .||+||+|+.|| +++|+++++.++. .+.
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~~~ 80 (140)
T 2qr3_A 3 LGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVLREE--NPEVVLLDMNFTSGINNGNEGLFWLHEIKRQYRD 80 (140)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHHHHS--CEEEEEEETTTTC-----CCHHHHHHHHHHHCTT
T ss_pred CceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHHcC--CCCEEEEeCCcCCCCCCCccHHHHHHHHHhhCcC
Confidence 47999999999999999999999999999999999999999875 699999999999 9999999998865 468
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+|||++|+..+...+.++++.||++||.||++.++|..++++++++...
T Consensus 81 ~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~~~ 129 (140)
T 2qr3_A 81 LPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAASQAKD 129 (140)
T ss_dssp CCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHTCC--
T ss_pred CCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999876543
No 70
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.77 E-value=4.1e-18 Score=170.86 Aligned_cols=121 Identities=31% Similarity=0.507 Sum_probs=112.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
.+++||||||++..+..++.+|+..||.|..+.++.+|++.++.. .||+||+|+.||+++|+++++.|+. .+.+|||
T Consensus 128 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~dlvl~D~~mp~~~G~~l~~~ir~~~~~~piI 205 (254)
T 2ayx_A 128 DDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKN--HIDIVLSDVNMPNMDGYRLTQRIRQLGLTLPVI 205 (254)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHHHHS--CCSEEEEEESSCSSCCHHHHHHHHHHHCCSCEE
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHhcCCCCcEE
Confidence 368999999999999999999999999999999999999999875 6999999999999999999998875 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
++|++.+.+...+++++||++||.||++.++|..++++++++.+
T Consensus 206 ~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~~~ 249 (254)
T 2ayx_A 206 GVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAERVR 249 (254)
T ss_dssp EEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999887653
No 71
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.76 E-value=3.2e-18 Score=163.58 Aligned_cols=120 Identities=26% Similarity=0.414 Sum_probs=110.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 4 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~ 81 (208)
T 1yio_A 4 KPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHRRPE--QHGCLVLDMRMPGMSGIELQEQLTAISDGIPIVF 81 (208)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHCCTT--SCEEEEEESCCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhhhcc--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 45899999999999999999999999999999999999988653 7999999999999999999998875 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+|++.+...+.++++.||++||.||++.++|..+++.++++..
T Consensus 82 ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 124 (208)
T 1yio_A 82 ITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQLNA 124 (208)
T ss_dssp EESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHhhhh
Confidence 9999998889999999999999999999999999999987653
No 72
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.76 E-value=9.5e-18 Score=152.48 Aligned_cols=121 Identities=26% Similarity=0.468 Sum_probs=110.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..++.+|+. +|.|..+.++.+|++.+.+. ..||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 4 ~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~~~-~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 81 (151)
T 3kcn_A 4 NERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIKKS-DPFSVIMVDMRMPGMEGTEVIQKARLISPNSVYLM 81 (151)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHHHS-CCCSEEEEESCCSSSCHHHHHHHHHHHCSSCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHHcC-CCCCEEEEeCCCCCCcHHHHHHHHHhcCCCcEEEE
Confidence 57999999999999999999986 99999999999999999874 23699999999999999999998874 57899999
Q ss_pred EecCCChHHHHHHHhcC-CceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 93 LSGNGDPKLVMKGITHG-ACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aG-A~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+|+..+...+.+++..| |++||.||++.++|..+++.++++...
T Consensus 82 ~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~~~ 126 (151)
T 3kcn_A 82 LTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQYDL 126 (151)
T ss_dssp EECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999 999999999999999999999887654
No 73
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.76 E-value=8.8e-18 Score=161.67 Aligned_cols=121 Identities=21% Similarity=0.337 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQ-YHV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~g-y~V-~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIP 89 (663)
..++||||||++..+..++.+|+..+ |.| ..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ 81 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAESL--DPDLILLDLNMPGMNGLETLDKLREKSLSGR 81 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEEETTSTTSCHHHHHHHHHHSCCCSE
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHhc--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCc
Confidence 34799999999999999999999874 887 6899999999999875 6999999999999999999998875 46899
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
||++|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 82 ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (215)
T 1a04_A 82 IVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAGEM 127 (215)
T ss_dssp EEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHSCC
T ss_pred EEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcCCe
Confidence 9999999999999999999999999999999999999999987643
No 74
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.76 E-value=6.7e-18 Score=150.98 Aligned_cols=119 Identities=26% Similarity=0.420 Sum_probs=109.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+ ||+++|+++++.++. .+.+|||+
T Consensus 4 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dlvi~d~-~~~~~g~~~~~~l~~~~~~~pii~ 80 (142)
T 2qxy_A 4 TPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFLRRE--KIDLVFVDV-FEGEESLNLIRRIREEFPDTKVAV 80 (142)
T ss_dssp CCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHHTTS--CCSEEEEEC-TTTHHHHHHHHHHHHHCTTCEEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcc--CCCEEEEeC-CCCCcHHHHHHHHHHHCCCCCEEE
Confidence 56999999999999999999999999999999999999999864 799999999 999999999998875 46799999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+|+..+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~~ 123 (142)
T 2qxy_A 81 LSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISSTP 123 (142)
T ss_dssp EESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC--
T ss_pred EECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999987654
No 75
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.76 E-value=5.5e-18 Score=146.14 Aligned_cols=113 Identities=27% Similarity=0.448 Sum_probs=103.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
++||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~l~~~~g~~~~~~l~~~~~~~~ii~~ 79 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFFSG--NYDLVILDIEMPGISGLEVAGEIRKKKKDAKIILL 79 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCEEEE
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHhcC--CCCEEEEECCCCCCCHHHHHHHHHccCCCCeEEEE
Confidence 4899999999999999999999999999999999999999865 6999999999999999999998875 468999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
|+..+.. .+++..||++||.||++.++|..++++++
T Consensus 80 s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~ 115 (116)
T 3a10_A 80 TAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKLL 115 (116)
T ss_dssp ESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHHT
T ss_pred ECCcchH--HHHHhccccceEECCCCHHHHHHHHHHHh
Confidence 9887655 67889999999999999999999998764
No 76
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.75 E-value=4e-18 Score=181.84 Aligned_cols=119 Identities=30% Similarity=0.470 Sum_probs=111.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
.+||||||++..+..|+.+|+..||.|..+.++.+|++.+... .||+||+|+.||++||+++++.++. .+.+|||++
T Consensus 1 ~~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllDi~mP~~dG~ell~~lr~~~~~~pvI~l 78 (368)
T 3dzd_A 1 KRVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKIKEL--FFPVIVLDVWMPDGDGVNFIDFIKENSPDSVVIVI 78 (368)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHB--CCSEEEEESEETTEETTTHHHHHHHHCTTCEEEEE
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCeEEEE
Confidence 3799999999999999999999999999999999999999875 6999999999999999999998874 578999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
|++.+.+.+.+|++.||++||.||++.++|..++++++++..
T Consensus 79 T~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~ 120 (368)
T 3dzd_A 79 TGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEYS 120 (368)
T ss_dssp ECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHS
T ss_pred eCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999987653
No 77
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.75 E-value=1.1e-17 Score=152.33 Aligned_cols=121 Identities=28% Similarity=0.494 Sum_probs=111.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
+++||||||++..+..++.+|+..||.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~--~~dliild~~l~~~~g~~~~~~l~~~~~~~pii~ 80 (155)
T 1qkk_A 3 APSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD--FAGIVISDIRMPGMDGLALFRKILALDPDLPMIL 80 (155)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTCCTT--CCSEEEEESCCSSSCHHHHHHHHHHHCTTSCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCCEEE
Confidence 57999999999999999999999999999999999999988754 6999999999999999999998865 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+|+..+...+.+++..||++||.||++.++|..+++.++++.+.
T Consensus 81 ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~~~~ 124 (155)
T 1qkk_A 81 VTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEKRRL 124 (155)
T ss_dssp EECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHH
T ss_pred EECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999876654
No 78
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.75 E-value=1.6e-17 Score=148.27 Aligned_cols=120 Identities=18% Similarity=0.283 Sum_probs=108.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhc----CCCceEEEEeCCCCCCCHHHHHHHHhcc--
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLREN----KNKFDLVISDVHMPDMDGFKLLELVGLE-- 85 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~----k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-- 85 (663)
.++||||||++..+..++.+|+..|+ .|..+.++.+|++.++.. ...||+||+|+.||+++|+++++.++..
T Consensus 7 ~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~~~~~~dlii~D~~l~~~~g~~~~~~l~~~~~ 86 (143)
T 2qvg_A 7 KVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKENKIHPKLILLDINIPKMNGIEFLKELRDDSS 86 (143)
T ss_dssp CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTCCCCCCSEEEEETTCTTSCHHHHHHHHTTSGG
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccccCCCCCEEEEecCCCCCCHHHHHHHHHcCcc
Confidence 46899999999999999999999998 999999999999999851 1369999999999999999999999765
Q ss_pred -CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 86 -MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 86 -~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+.+|||++++..+.+.+.++++.||++||.||++.++|..++.+....
T Consensus 87 ~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~~~~ 135 (143)
T 2qvg_A 87 FTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWILQSM 135 (143)
T ss_dssp GTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHHHHC
T ss_pred ccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh
Confidence 689999999999999999999999999999999999999997765543
No 79
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.75 E-value=1e-17 Score=145.32 Aligned_cols=116 Identities=20% Similarity=0.353 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhcc---CCCcE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLE---MDLPV 90 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MP-dmDG~eLLe~Ir~~---~dIPV 90 (663)
++||||||++..+..++.+|+..||+|..+.++.+|++.+... .||+||+|+.|| +++|+++++.++.. +.+||
T Consensus 6 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvi~d~~~~~~~~g~~~~~~l~~~~~~~~~~i 83 (127)
T 2gkg_A 6 KKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIRRD--RPDLVVLAVDLSAGQNGYLICGKLKKDDDLKNVPI 83 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHHHH--CCSEEEEESBCGGGCBHHHHHHHHHHSTTTTTSCE
T ss_pred CeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHhc--CCCEEEEeCCCCCCCCHHHHHHHHhcCccccCCCE
Confidence 5899999999999999999999999999999999999999875 699999999999 99999999999764 68999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|++ +..+.....++++.|+++||.||++.++|..+++++++.
T Consensus 84 i~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 125 (127)
T 2gkg_A 84 VII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIGF 125 (127)
T ss_dssp EEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred EEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHcC
Confidence 999 888888899999999999999999999999999988754
No 80
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.75 E-value=1.4e-17 Score=151.43 Aligned_cols=122 Identities=21% Similarity=0.341 Sum_probs=112.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~-~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPV 90 (663)
.++||||||++..+..++.+|+. .||.|. .+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~l~~~~~~~~i 82 (153)
T 3cz5_A 5 TARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLYRET--TPDIVVMDLTLPGPGGIEATRHIRQWDGAARI 82 (153)
T ss_dssp CEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHHHTT--CCSEEEECSCCSSSCHHHHHHHHHHHCTTCCE
T ss_pred ccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHHhcC--CCCEEEEecCCCCCCHHHHHHHHHHhCCCCeE
Confidence 57999999999999999999998 799988 899999999999864 6999999999999999999998875 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
|++|+..+.....+++..||++||.||++.++|..+++.++++....
T Consensus 83 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~~~~ 129 (153)
T 3cz5_A 83 LIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILAGRRAM 129 (153)
T ss_dssp EEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTTTCCEE
T ss_pred EEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHhCCccC
Confidence 99999999999999999999999999999999999999998776543
No 81
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.75 E-value=9.3e-18 Score=162.79 Aligned_cols=118 Identities=28% Similarity=0.392 Sum_probs=111.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
++||||||++..+..|+.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++..+.+|||++|
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~ii~lt 82 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFDRA--GADIVLLDLMLPGMSGTDVCKQLRARSSVPVIMVT 82 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHHHCSCSEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHhcc--CCCEEEEECCCCCCCHHHHHHHHHcCCCCCEEEEe
Confidence 6899999999999999999999999999999999999999875 69999999999999999999999877889999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 83 ~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~~ 122 (230)
T 2oqr_A 83 ARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRRG 122 (230)
T ss_dssp CCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9998888999999999999999999999999999998764
No 82
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.75 E-value=2.7e-17 Score=147.15 Aligned_cols=118 Identities=27% Similarity=0.372 Sum_probs=106.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
.+||||||++..+..++.+|+.. |.|..+.++.+|+..+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~lp~~~g~~~~~~l~~~~~~~~ii~~ 78 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILEEE--WVQVIICDQRMPGRTGVDFLTEVRERWPETVRIII 78 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHHHS--CEEEEEEESCCSSSCHHHHHHHHHHHCTTSEEEEE
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHHhCCCCcEEEE
Confidence 47999999999999999999875 9999999999999999865 6999999999999999999998875 467999999
Q ss_pred ecCCChHHHHHHHhc-CCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 94 SGNGDPKLVMKGITH-GACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 94 SA~~d~e~v~kAl~a-GA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
|+..+...+.+++.. ||++||.||++.++|..+++.++++..
T Consensus 79 s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~~ 121 (139)
T 2jk1_A 79 TGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARMFT 121 (139)
T ss_dssp ESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred eCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 999988888888876 599999999999999999999887643
No 83
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.75 E-value=9.6e-18 Score=162.66 Aligned_cols=120 Identities=34% Similarity=0.511 Sum_probs=111.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..|+.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 7 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~~~--~~dlvllD~~l~~~~g~~~~~~l~~~~~~~~ii~ 84 (233)
T 1ys7_A 7 SPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSATEN--RPDAIVLDINMPVLDGVSVVTALRAMDNDVPVCV 84 (233)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHS--CCSEEEEESSCSSSCHHHHHHHHHHTTCCCCEEE
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCCCCEEE
Confidence 47999999999999999999999999999999999999999865 6999999999999999999998875 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+|+..+...+.+++++||++||.||++.++|..+++.++++..
T Consensus 85 lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~~ 127 (233)
T 1ys7_A 85 LSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRRG 127 (233)
T ss_dssp EECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhcc
Confidence 9999998888999999999999999999999999999998753
No 84
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.75 E-value=6.2e-18 Score=152.65 Aligned_cols=118 Identities=25% Similarity=0.389 Sum_probs=101.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh--CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRR--CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~--~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPV 90 (663)
++||||||++..+..++.+|.. .+|.+. .+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~~~~--~~dlvllD~~lp~~~g~~l~~~l~~~~~~~~i 80 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIALKH--PPNVLLTDVRMPRMDGIELVDNILKLYPDCSV 80 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHHTTS--CCSEEEEESCCSSSCHHHHHHHHHHHCTTCEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHHhcC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcE
Confidence 5899999999999999999974 578777 899999999998754 6999999999999999999998874 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++|+..+.+.+.++++.||++||.||++.++|..+++.++++.
T Consensus 81 i~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~~ 124 (141)
T 3cu5_A 81 IFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQTV 124 (141)
T ss_dssp EEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99999988888889999999999999999999999999988764
No 85
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.74 E-value=9.8e-18 Score=164.69 Aligned_cols=118 Identities=31% Similarity=0.522 Sum_probs=110.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
++||||||++..+..|+.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++....+|||++|
T Consensus 6 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ii~lt 83 (238)
T 2gwr_A 6 QRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVREL--RPDLVLLDLMLPGMNGIDVCRVLRADSGVPIVMLT 83 (238)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHHHH--CCSEEEEESSCSSSCHHHHHHHHHTTCCCCEEEEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhCCCCcEEEEe
Confidence 6899999999999999999999999999999999999999875 69999999999999999999999877789999999
Q ss_pred cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 84 ~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~ 123 (238)
T 2gwr_A 84 AKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRRN 123 (238)
T ss_dssp ETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCCC
T ss_pred CCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 9999888999999999999999999999999999887654
No 86
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.74 E-value=8.8e-18 Score=177.95 Aligned_cols=119 Identities=28% Similarity=0.517 Sum_probs=107.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..|+.+|+..||+|..+.++.+|++.+.+. .|||||+|+.||++||+++++.++. .+++|||+
T Consensus 5 ~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~~~pii~ 82 (394)
T 3eq2_A 5 SATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIFESE--QPDLVICDLRMPQIDGLELIRRIRQTASETPIIV 82 (394)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHHHHS--CCSEEEECCCSSSSCTHHHHHHHHHTTCCCCEEE
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhhC--CCCEEEEcCCCCCCCHHHHHHHHHhhCCCCcEEE
Confidence 47999999999999999999999999999999999999999875 6999999999999999999998875 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPv-s~eeL~~~~q~Vlrr~ 134 (663)
+|++.+.+.+.++++.||++||.||+ ..++|..++++++++.
T Consensus 83 lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~~~~ 125 (394)
T 3eq2_A 83 LSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRALDRA 125 (394)
T ss_dssp C---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999 6899999888877653
No 87
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.73 E-value=3e-17 Score=176.49 Aligned_cols=119 Identities=30% Similarity=0.424 Sum_probs=111.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPVI 91 (663)
.+||||||++..+..|+.+|+..||.|..+.++.+|++.+... .|||||+|+.||+++|+++++.++.. +.+|||
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~~~~--~~dlvllD~~mp~~~G~~~~~~l~~~~~~~~~pii 79 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMDGFTVCRKLKDDPTTRHIPVV 79 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCHHHHHHHHHHSTTTTTSCEE
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHhcC--CCCEEEEcCCCCCCCHHHHHHHHhcCcccCCCCEE
Confidence 4899999999999999999999999999999999999999875 69999999999999999999999753 479999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
++|++.+...+.+++++||++||.||++.++|..+++.+++...
T Consensus 80 ~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~~~~ 123 (459)
T 1w25_A 80 LITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTRFKL 123 (459)
T ss_dssp EEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999887653
No 88
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.73 E-value=1.9e-17 Score=150.35 Aligned_cols=123 Identities=23% Similarity=0.268 Sum_probs=101.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CC-EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC-QY-HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~-gy-~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPV 90 (663)
.++||||||++..+..|+.+|+.. || .|..+.++.+|++.+... ..||+||+|+.||+++|+++++.++. .+.+||
T Consensus 3 ~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~i 81 (154)
T 2qsj_A 3 LTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFLEAD-NTVDLILLDVNLPDAEAIDGLVRLKRFDPSNAV 81 (154)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHHHTT-CCCSEEEECC------CHHHHHHHHHHCTTSEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHHhcc-CCCCEEEEeCCCCCCchHHHHHHHHHhCCCCeE
Confidence 479999999999999999999988 88 688999999999999861 37999999999999999999998875 468999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
|++|+..+...+.+++..||++||.||++.++|..+++.++++....
T Consensus 82 i~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~~~~~ 128 (154)
T 2qsj_A 82 ALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEGEIFL 128 (154)
T ss_dssp EEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTTCCBC
T ss_pred EEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcCCEEc
Confidence 99999999899999999999999999999999999999999876543
No 89
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.73 E-value=1.8e-17 Score=148.46 Aligned_cols=119 Identities=21% Similarity=0.387 Sum_probs=101.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc------cCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL------EMD 87 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~------~~d 87 (663)
.++||||||++..+..++.+|+..+|.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~l~~~~~~~~~~~ 87 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAYQNR--QFDVIIMDIQMPVMDGLEAVSEIRNYERTHNTKR 87 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHHHHS--CCSEEEECTTCCSSCHHHHHHHHHHHHHHHTCCC
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHHhcC--CCCEEEEeCCCCCCcHHHHHHHHHhhhhhcCCCc
Confidence 36999999999999999999999999999999999999999864 6999999999999999999998875 267
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
+|||++++........ .+||++||.||++.++|..+++.++++....
T Consensus 88 ~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~~~~~~ 134 (140)
T 3c97_A 88 ASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHSEGAEG 134 (140)
T ss_dssp CCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC-----
T ss_pred eEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhCCCCCC
Confidence 8999999876544332 7899999999999999999999998765443
No 90
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.73 E-value=6.9e-17 Score=143.87 Aligned_cols=119 Identities=19% Similarity=0.235 Sum_probs=107.7
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CC
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DL 88 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~-dI 88 (663)
....+++||||||++..+..|+.+|+..||.|..+.++.+|++.+... .||+|| ||+++|+++++.++..+ .+
T Consensus 14 ~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----~~~~~g~~~~~~l~~~~~~~ 87 (137)
T 2pln_A 14 VPRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSI 87 (137)
T ss_dssp -CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHS--CCSEEE----ECSTTHHHHHHHHHHHSTTS
T ss_pred cCCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHHcC--CCCEEE----EcCccHHHHHHHHHhcCCCc
Confidence 344578999999999999999999999999999999999999999875 699999 89999999999887557 89
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRK 134 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLlKPv-s~eeL~~~~q~Vlrr~ 134 (663)
|||++|+..+...+.++++.||++||.||+ +.++|..+++.++++.
T Consensus 88 ~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~~~ 134 (137)
T 2pln_A 88 VVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 134 (137)
T ss_dssp EEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC--
T ss_pred cEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHhhh
Confidence 999999999999999999999999999999 9999999999887654
No 91
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.73 E-value=3.3e-17 Score=175.52 Aligned_cols=119 Identities=29% Similarity=0.524 Sum_probs=111.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIIL 93 (663)
|+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||++
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l~~~--~~DlvllD~~mp~~dG~ell~~lr~~~~~~pvIvl 78 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLSEK--HFNVVLLDLLLPDVNGLEILKWIKERSPETEVIVI 78 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHHHHS--CCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHHhhCCCCcEEEE
Confidence 5899999999999999999999999999999999999999865 6999999999999999999998874 568999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
|++.+.+.+.++++.||+|||.||++.++|..+++++++...
T Consensus 79 T~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~~~~ 120 (387)
T 1ny5_A 79 TGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIEHRK 120 (387)
T ss_dssp EETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHHHHH
T ss_pred eCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987654
No 92
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.73 E-value=2.3e-17 Score=140.33 Aligned_cols=114 Identities=18% Similarity=0.183 Sum_probs=104.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPV 90 (663)
+.+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 1 ~~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~~~--~~dlii~d~~~~~~~~~~~~~~l~~~~~~~~~~i 78 (119)
T 2j48_A 1 AGHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLDLL--QPIVILMAWPPPDQSCLLLLQHLREHQADPHPPL 78 (119)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHHHH--CCSEEEEECSTTCCTHHHHHHHHHHTCCCSSCCC
T ss_pred CCEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHHhc--CCCEEEEecCCCCCCHHHHHHHHHhccccCCCCE
Confidence 36899999999999999999999999999999999999999875 69999999999999999999988754 67999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|+++...+.. +++..|+++||.||++.++|..+++++++
T Consensus 79 i~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 117 (119)
T 2j48_A 79 VLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQGLCP 117 (119)
T ss_dssp EEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHTTCC
T ss_pred EEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHHHhc
Confidence 9999987766 88999999999999999999999876653
No 93
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.72 E-value=2.3e-17 Score=148.66 Aligned_cols=115 Identities=23% Similarity=0.319 Sum_probs=96.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
+...+||||||++..+..|+.+|+.. +|.++ .+.++.+|++.+.+. ..||+||+|+.||+++|+++++.++....+|
T Consensus 11 ~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~-~~~dlvilD~~l~~~~g~~~~~~lr~~~~~~ 89 (145)
T 3kyj_B 11 GSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLAAQ-PNVDLILLDIEMPVMDGMEFLRHAKLKTRAK 89 (145)
T ss_dssp CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHHHC-TTCCEEEECTTSCCCTTCHHHHHHHHHCCCE
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHhcC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCC
Confidence 45679999999999999999999998 88865 899999999999864 2699999999999999999999998766699
Q ss_pred EEEEec--CCChHHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 006057 90 VIMLSG--NGDPKLVMKGITHGACDYLLKPVRIEELKNIW 127 (663)
Q Consensus 90 VIILSA--~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~ 127 (663)
||++++ ..+...+.++++.||++||.||++.++|..++
T Consensus 90 iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i 129 (145)
T 3kyj_B 90 ICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHDLEE 129 (145)
T ss_dssp EC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC------
T ss_pred eEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHHHHH
Confidence 999987 66667788999999999999999966655554
No 94
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.72 E-value=1.3e-16 Score=142.82 Aligned_cols=119 Identities=21% Similarity=0.364 Sum_probs=103.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCc
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRC-QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLP 89 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~-gy~V-~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~-dIP 89 (663)
..++||||||++..+..++.+|+.. ++.+ ..+.++.+|++.+... .||+||+|+.||+++|+++++.++... ..|
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvi~d~~l~~~~g~~~~~~l~~~~~~~~ 85 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFLQHN--KVDAIFLDINIPSLDGVLLAQNISQFAHKPF 85 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHHHHC--CCSEEEECSSCSSSCHHHHHHHHTTSTTCCE
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhC--CCCEEEEecCCCCCCHHHHHHHHHccCCCce
Confidence 3579999999999999999999986 7884 5899999999999875 699999999999999999999997654 567
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
||++|+..+ .+.+++..||++||.||++.++|..++++++++.+
T Consensus 86 ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 129 (143)
T 2qv0_A 86 IVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAWE 129 (143)
T ss_dssp EEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHHH
Confidence 888988743 57789999999999999999999999999987653
No 95
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.72 E-value=8.3e-17 Score=149.40 Aligned_cols=118 Identities=25% Similarity=0.397 Sum_probs=101.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-CE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQ-YH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~g-y~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.++||||||++..+..|+.+|+..+ +. |..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++....+|||
T Consensus 25 ~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~--~~dlvilD~~l~~~~g~~l~~~lr~~~~~~ii 102 (164)
T 3t8y_A 25 VIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAIEL--KPDVITMDIEMPNLNGIEALKLIMKKAPTRVI 102 (164)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSSCSSSCHHHHHHHHHHHSCCEEE
T ss_pred ccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhccC--CCCEEEEeCCCCCCCHHHHHHHHHhcCCceEE
Confidence 4699999999999999999999875 34 45799999999999875 69999999999999999999999866559999
Q ss_pred EEecCCChH--HHHHHHhcCCceEEeCCCC---------HHHHHHHHHHHHHh
Q 006057 92 MLSGNGDPK--LVMKGITHGACDYLLKPVR---------IEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA~~d~e--~v~kAl~aGA~DYLlKPvs---------~eeL~~~~q~Vlrr 133 (663)
++++..+.. .+.+++++||++||.||++ .++|..+++.++.+
T Consensus 103 ~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~r~~~~~l~~~i~~~~~~ 155 (164)
T 3t8y_A 103 MVSSLTEEGAAITIEALRNGAVDFITKPHGSISLTFRQVAPELLEKIRQAMNV 155 (164)
T ss_dssp EEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCGGGGGGHHHHHHHHHHHTTS
T ss_pred EEecCCccchHHHHHHHHcCcCEEEeCCCCHHHHHHHhhhHHHHHHHHHHhCC
Confidence 999977654 6789999999999999999 67777777766654
No 96
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.72 E-value=1.8e-16 Score=139.27 Aligned_cols=119 Identities=21% Similarity=0.405 Sum_probs=107.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHHhc-cCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD-MDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~Ir~-~~dIPVI 91 (663)
.++||||||++..+..++.+|+..||.|..+.++.+|++.+.+. ..||+||+|+.||+ ++|+++++.++. .+.+|||
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~~-~~~dlvi~d~~l~~~~~g~~~~~~l~~~~~~~~ii 83 (132)
T 2rdm_A 5 AVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEMLKSG-AAIDGVVTDIRFCQPPDGWQVARVAREIDPNMPIV 83 (132)
T ss_dssp SCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHTT-CCCCEEEEESCCSSSSCHHHHHHHHHHHCTTCCEE
T ss_pred CceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHHHcC-CCCCEEEEeeeCCCCCCHHHHHHHHHhcCCCCCEE
Confidence 57999999999999999999999999999999999999999853 26999999999998 999999998875 4689999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
++|+..+.....+++..| +||.||++.++|..++++++++..
T Consensus 84 ~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~~~ 125 (132)
T 2rdm_A 84 YISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNARE 125 (132)
T ss_dssp EEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHTTC
T ss_pred EEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhcCC
Confidence 999999888888887776 899999999999999999987654
No 97
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.71 E-value=1.5e-17 Score=146.42 Aligned_cols=119 Identities=24% Similarity=0.326 Sum_probs=106.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
.++||||||++..+..++.+|+..++.|..+.++++|+..+.. . ||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~~--~-~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~ 79 (135)
T 3eqz_A 3 LNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLSLN--K-QDIIILDLMMPDMDGIEVIRHLAEHKSPASLIL 79 (135)
T ss_dssp CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSCCC--T-TEEEEEECCTTTTHHHHHHHHHHHTTCCCEEEE
T ss_pred cceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhhcc--C-CCEEEEeCCCCCCCHHHHHHHHHhCCCCCCEEE
Confidence 4799999999999999999999888899999999999987753 3 999999999999999999998874 46899999
Q ss_pred EecCCCh-----HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 93 LSGNGDP-----KLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 93 LSA~~d~-----e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
+|+..+. +.+.+++..||++||.||++.++|..+++++..+..
T Consensus 80 ~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~~~ 127 (135)
T 3eqz_A 80 ISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNRQA 127 (135)
T ss_dssp EESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCCC-
T ss_pred EEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhhcc
Confidence 9998875 677789999999999999999999999999876654
No 98
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.71 E-value=9.4e-18 Score=163.47 Aligned_cols=122 Identities=9% Similarity=-0.018 Sum_probs=106.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCEEEE-ECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRR-CQYHVTT-TSQAITALK-LLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMD 87 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~-~gy~V~t-asdg~EALe-lLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~d 87 (663)
..++||||||++..+..|+.+|+. .+|.|.. +.++.+++. .+... .||+||+|+.||+++|+++++.++. .++
T Consensus 6 ~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~~~~--~~dlvllD~~mp~~~G~~~~~~lr~~~~~~ 83 (225)
T 3klo_A 6 NKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKPESR--SIQMLVIDYSRISDDVLTDYSSFKHISCPD 83 (225)
T ss_dssp SSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCSGGG--GCCEEEEEGGGCCHHHHHHHHHHHHHHCTT
T ss_pred CceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHhhcc--CCCEEEEeCCCCCCCHHHHHHHHHHhhCCC
Confidence 357999999999999999999995 6888864 455666654 34443 7999999999999999999999876 678
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
+|||++|++.+......++..||++||.||++.++|..+++.++++..+
T Consensus 84 ~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 132 (225)
T 3klo_A 84 AKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQDEMW 132 (225)
T ss_dssp CEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTTCCB
T ss_pred CcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCCCEe
Confidence 9999999999988999999999999999999999999999999987543
No 99
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.71 E-value=7.4e-17 Score=155.72 Aligned_cols=115 Identities=28% Similarity=0.378 Sum_probs=107.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVIIL 93 (663)
++||||||++..+..++.+|+..+ .|..+.++.+|++.+ ..||+||+|+.||+++|+++++.++.. +.+|||++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~----~~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii~l 77 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE----EAFHVVVLDVMLPDYSGYEICRMIKETRPETWVILL 77 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC----SCCSEEEEESBCSSSBHHHHHHHHHHHCTTSEEEEE
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc----CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCCcEEEE
Confidence 589999999999999999999888 899999999999876 269999999999999999999988754 78999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|+..+...+.+++..||++||.||++.++|..+++.++++.
T Consensus 78 t~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 118 (220)
T 1p2f_A 78 TLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLERE 118 (220)
T ss_dssp ESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHC
T ss_pred EcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999998764
No 100
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.70 E-value=7.2e-17 Score=167.21 Aligned_cols=116 Identities=27% Similarity=0.334 Sum_probs=106.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHH-hCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006057 15 LRVLAVDDDPTCLLLLETLLR-RCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~-~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPV 90 (663)
.+||||||++..+..|+.+|. ..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++.. +.+||
T Consensus 19 ~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~~~--~~dlvl~D~~mp~~~G~~~~~~l~~~~~~~~~~i 96 (358)
T 3bre_A 19 VMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVANQI--KPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPI 96 (358)
T ss_dssp EEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHHHH--CCSEEEEESBCSSSBHHHHHHHHTTSTTTTTSCE
T ss_pred ceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHHhC--CCCEEEEeCCCCCCCHHHHHHHHhcCcccCCCcE
Confidence 579999999999999999996 4589999999999999999875 69999999999999999999999753 47999
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|++|++.+...+.++++.||++||.||++.++|..+++.+++
T Consensus 97 i~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~~~ 138 (358)
T 3bre_A 97 IVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYHSR 138 (358)
T ss_dssp EEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999987754
No 101
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.70 E-value=2e-17 Score=161.78 Aligned_cols=120 Identities=23% Similarity=0.300 Sum_probs=110.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC-CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQ-YHV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~g-y~V-~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVI 91 (663)
++||||||++..+..++.+|+..+ |.+ ..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~~~--~~dlvllD~~lp~~~g~~~~~~lr~~~~~~~ii 79 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVPAA--RPDVAVLDVRLPDGNGIELCRDLLSRMPDLRCL 79 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHHHH--CCSEEEECSEETTEEHHHHHHHHHHHCTTCEEE
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCcEE
Confidence 689999999999999999999886 885 4799999999999875 6999999999999999999998875 5789999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhcc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKI 136 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~ 136 (663)
++|+..+.+.+.++++.||++||.||++.++|..+++.++++...
T Consensus 80 ~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~~~~ 124 (225)
T 3c3w_A 80 ILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAGRSL 124 (225)
T ss_dssp EGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred EEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcCCee
Confidence 999999999999999999999999999999999999999987643
No 102
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.69 E-value=3.7e-17 Score=155.45 Aligned_cols=116 Identities=14% Similarity=0.129 Sum_probs=105.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCcEE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLPVI 91 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIPVI 91 (663)
.+++||||||++..+..++.+|...||.|..+.++.+|+ . ..||+||+|+.||+++|+ +++.++.. +.+|||
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al----~--~~~dlvl~D~~mp~~~g~-l~~~~~~~~~~~~ii 83 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF----D--VPVDVVFTSIFQNRHHDE-IAALLAAGTPRTTLV 83 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC----S--SCCSEEEEECCSSTHHHH-HHHHHHHSCTTCEEE
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC----C--CCCCEEEEeCCCCccchH-HHHHHhccCCCCCEE
Confidence 367999999999999999999999999999888877766 2 369999999999999999 88888766 789999
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhc
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKK 135 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~ 135 (663)
++|++.+.+.+.++++.||++||.||++.++|..+++.++++..
T Consensus 84 ~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~~~~~ 127 (196)
T 1qo0_D 84 ALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSARRISE 127 (196)
T ss_dssp EEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHHHHHH
T ss_pred EEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999887643
No 103
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.69 E-value=6.3e-17 Score=144.28 Aligned_cols=120 Identities=23% Similarity=0.293 Sum_probs=102.3
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHhcc-C
Q 006057 9 DQFPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRE-NKNKFDLVISDVHMPDMDGFKLLELVGLE-M 86 (663)
Q Consensus 9 ~~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre-~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~ 86 (663)
..++.+.+||||||++..+..++.+|+..||.|..+.++.+|++.++. . .||+||+|+.||+++|+++++.++.. +
T Consensus 10 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~~--~~dlvilD~~l~~~~g~~~~~~l~~~~~ 87 (138)
T 2b4a_A 10 HHHMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHRSQLS--TCDLLIVSDQLVDLSIFSLLDIVKEQTK 87 (138)
T ss_dssp ----CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTGGGGG--SCSEEEEETTCTTSCHHHHHHHHTTSSS
T ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHHHhCC--CCCEEEEeCCCCCCCHHHHHHHHHhhCC
Confidence 455678999999999999999999999999999999999999999876 4 69999999999999999999999754 5
Q ss_pred CCcEEEEe-cCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 87 DLPVIMLS-GNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 87 dIPVIILS-A~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
.+|||++| +..+... .+++ |++||.||++.++|..++++++++.
T Consensus 88 ~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~~~~ 132 (138)
T 2b4a_A 88 QPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHKPSM 132 (138)
T ss_dssp CCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTCCC-
T ss_pred CCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHHHhc
Confidence 79999999 8777666 6665 9999999999999999998876543
No 104
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.68 E-value=2.3e-16 Score=152.56 Aligned_cols=114 Identities=20% Similarity=0.261 Sum_probs=106.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~-dIPVIIL 93 (663)
|+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+|| ||+++|+++++.++..+ .+|||++
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~~~--~~dlvi----lp~~~g~~~~~~lr~~~~~~~ii~l 74 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLMDIR--NYDLVM----VSDKNALSFVSRIKEKHSSIVVLVS 74 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHHTTS--CCSEEE----ECCTTHHHHHHHHHHHCTTSEEEEE
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHHhcC--CCCEEE----eCCCCHHHHHHHHHhCCCCCcEEEE
Confidence 5899999999999999999999999999999999999999754 799999 99999999999887556 8999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCC-CHHHHHHHHHHHHHhh
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPV-RIEELKNIWQHVVRRK 134 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPv-s~eeL~~~~q~Vlrr~ 134 (663)
|+..+...+.+++.+||++||.||+ +.++|..+++.++++.
T Consensus 75 t~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~~ 116 (223)
T 2hqr_A 75 SDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRFW 116 (223)
T ss_dssp ESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSSC
T ss_pred ECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999999999 9999999999988664
No 105
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.66 E-value=2.3e-16 Score=168.58 Aligned_cols=120 Identities=23% Similarity=0.313 Sum_probs=105.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~-~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~-dIPVI 91 (663)
.++||||||++..+..++.+|+. .+|.|..+.++.+|++.++.. ..||+||+|+.||++||+++++.++... .+|||
T Consensus 3 ~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~~~-~~~DlvllDi~mP~~dG~ell~~l~~~~~~~~ii 81 (400)
T 3sy8_A 3 DLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILESC-GHVDIAICDLQMSGMDGLAFLRHASLSGKVHSVI 81 (400)
T ss_dssp CEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHHHH-SCEEEEEECSSCSSSCHHHHHHHHHHHTCEEEEE
T ss_pred CceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHhhC-CCCCEEEEeCCCCCCCHHHHHHHHHhcCCCceEE
Confidence 36999999999999999999998 578999999999999999863 2699999999999999999999887554 45677
Q ss_pred EEecCCCh-----HHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 92 MLSGNGDP-----KLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~-----e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
++|+..+. ..+.+++..||++||.||++.++|..++++++++.
T Consensus 82 ~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~~ 129 (400)
T 3sy8_A 82 LSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNARR 129 (400)
T ss_dssp ESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHHT
T ss_pred EEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHhh
Confidence 77776665 56788999999999999999999999999988764
No 106
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.66 E-value=3.8e-18 Score=147.74 Aligned_cols=119 Identities=30% Similarity=0.435 Sum_probs=108.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVII 92 (663)
..+||||||++..+..++.+|+..||.|..+.++.+|++.+... .||+||+|+.||+++|+++++.++. .+.+|||+
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~~~--~~dlvi~d~~~~~~~g~~~~~~l~~~~~~~~ii~ 80 (124)
T 1dc7_A 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASK--TPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII 80 (124)
T ss_dssp CCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHSSSC--CCSCEEECSCSSHHHHCSTHHHHHHHCTTSCCCC
T ss_pred ccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHHhcC--CCCEEEEeeecCCCCHHHHHHHHHhhCCCCCEEE
Confidence 35799999999999999999999899999999999999988653 6999999999999999999998864 46899999
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+|+..+...+.++++.||++||.||++.++|..+++.++++.
T Consensus 81 ~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 122 (124)
T 1dc7_A 81 MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHY 122 (124)
T ss_dssp BCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHHHT
T ss_pred EecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHHhh
Confidence 999988888889999999999999999999999999988654
No 107
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.60 E-value=7.3e-15 Score=155.87 Aligned_cols=119 Identities=26% Similarity=0.428 Sum_probs=104.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC-QYH-VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~-gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.+|||||||++..+..|+.+|+.. +|+ |..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++....+|||
T Consensus 3 ~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~~~--~pDlVllDi~mp~~dGlell~~l~~~~p~pVI 80 (349)
T 1a2o_A 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIKKF--NPDVLTLDVEMPRMDGLDFLEKLMRLRPMPVV 80 (349)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHHHH--CCSEEEEECCCSSSCHHHHHHHHHHSSCCCEE
T ss_pred CCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHhcc--CCCEEEEECCCCCCCHHHHHHHHHhcCCCcEE
Confidence 479999999999999999999986 888 56899999999999875 69999999999999999999999765559999
Q ss_pred EEecCCCh--HHHHHHHhcCCceEEeCCCCH---------HHHHHHHHHHHHhh
Q 006057 92 MLSGNGDP--KLVMKGITHGACDYLLKPVRI---------EELKNIWQHVVRRK 134 (663)
Q Consensus 92 ILSA~~d~--e~v~kAl~aGA~DYLlKPvs~---------eeL~~~~q~Vlrr~ 134 (663)
++|+..+. +...++++.||++||.||++. ++|...++.+.+.+
T Consensus 81 vlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~~~~~l~~~~~~L~~~I~~~~~~~ 134 (349)
T 1a2o_A 81 MVSSLTGKGSEVTLRALELGAIDFVTKPQLGIREGMLAYSEMIAEKVRTAARAR 134 (349)
T ss_dssp EEECCTHHHHHHHHHHHHHTCCEEEECSSSSCSSCHHHHHHHHHHHHHHHHHCC
T ss_pred EEECCCcccHHHHHHHHhCCceEEEECCCCccchhHHHHHHHHHHHHHHHHhhh
Confidence 99998775 458899999999999999983 77888888776543
No 108
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.58 E-value=2.3e-15 Score=151.81 Aligned_cols=102 Identities=17% Similarity=0.291 Sum_probs=86.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRC-QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~-gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
.|||||||++..++.|...|... +|.|..+ ++.+++..+.. ..||+||+|+.||++||+++++.++.. .+|||++
T Consensus 5 ~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~-~~~~~~~~~~~--~~~dlvllD~~mP~~~G~~~~~~lr~~-~~pvi~l 80 (259)
T 3luf_A 5 QKILIVEDSMTIRRMLIQAIAQQTGLEIDAF-DTLEGARHCQG--DEYVVALVDLTLPDAPSGEAVKVLLER-GLPVVIL 80 (259)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHHCCEEEEE-SSTGGGTTCCT--TTEEEEEEESCBTTBTTSHHHHHHHHT-TCCEEEE
T ss_pred CeEEEEECCHHHHHHHHHHHHhcCCeEEEEe-ChHHHHHHhhc--CCCcEEEEeCCCCCCCHHHHHHHHHhC-CCCEEEE
Confidence 58999999999999999999764 7877655 45555554433 379999999999999999999998754 6999999
Q ss_pred ecCCChHHHHHHHhcCCceEEeCCCCH
Q 006057 94 SGNGDPKLVMKGITHGACDYLLKPVRI 120 (663)
Q Consensus 94 SA~~d~e~v~kAl~aGA~DYLlKPvs~ 120 (663)
|++.+.+...+++++||++||.||+..
T Consensus 81 t~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 81 TADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp ECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred EccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 999999999999999999999999754
No 109
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.53 E-value=9e-15 Score=169.44 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=108.3
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHHHHHHH
Q 006057 15 LRVLAVDDDP-TC-------LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPD----MDGFKLLELV 82 (663)
Q Consensus 15 lRVLIVDDD~-~~-------r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPd----mDG~eLLe~I 82 (663)
|+|||||||+ .. ++.|+..|+..||+|..+.++++|+..+++. ..||+||+|+.||+ ++|+++++.|
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~~~~-~~~d~vilDi~lp~~~~~~~G~~ll~~i 79 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAILSSN-EAIDCLMFSYQMEHPDEHQNVRQLIGKL 79 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHTTT-CCCSEEEEECCCCSHHHHHHHHHHHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHhcC-CCCcEEEEeCCCCcccccccHHHHHHHH
Confidence 5899999999 88 9999999999999999999999999999864 25999999999999 9999999999
Q ss_pred hcc-CCCcEEEEecCCC-hHHHHHHHhcCCceEEeCCCCHHH-HHHHHHHHHHhh
Q 006057 83 GLE-MDLPVIMLSGNGD-PKLVMKGITHGACDYLLKPVRIEE-LKNIWQHVVRRK 134 (663)
Q Consensus 83 r~~-~dIPVIILSA~~d-~e~v~kAl~aGA~DYLlKPvs~ee-L~~~~q~Vlrr~ 134 (663)
|.. .++|||++|+..+ .+....++..||+||+.||++..+ |..+|+.++|+.
T Consensus 80 R~~~~~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr~ 134 (755)
T 2vyc_A 80 HERQQNVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTRY 134 (755)
T ss_dssp HHHSTTCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHHh
Confidence 765 5899999999877 677778899999999999999999 889999999874
No 110
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=98.97 E-value=9.4e-09 Score=110.38 Aligned_cols=120 Identities=25% Similarity=0.323 Sum_probs=102.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc---CCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE---MDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~---~dIPV 90 (663)
+.+|++|||+...+..+...|.. .+.+....+..+++. ... ..||+|++|+.||+|+|+++++.++.. ..+||
T Consensus 152 ~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~-~~~--~~~dlil~D~~mp~~dG~~~~~~ir~~~~~~~~pi 227 (459)
T 1w25_A 152 GGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKI-SAG--GPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPV 227 (459)
T ss_dssp SCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHH-HHH--SSCSEEEEETTCSSSCHHHHHHHHHTSGGGTTCCE
T ss_pred CCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhh-hcc--CCCCEEEEecCCCCCcHHHHHHHHHhCccccCCcE
Confidence 56899999999888888888865 467777888888763 333 369999999999999999999988743 46899
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhhccc
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRKKID 137 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~~~~ 137 (663)
|++++..+.....++++.|+.+|+.||+..+++..++..+++++...
T Consensus 228 i~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~~~~~~~~ 274 (459)
T 1w25_A 228 LAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQIQRKRYT 274 (459)
T ss_dssp EEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998887765443
No 111
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=98.91 E-value=9e-10 Score=106.29 Aligned_cols=94 Identities=22% Similarity=0.364 Sum_probs=77.9
Q ss_pred CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 39 YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 39 y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
+.|..+.++.+|++.+.+. .||+||+|+.||+++|+++++.++. .+..++++++.....+.+.++++.||++|+.||
T Consensus 6 ~~v~~~~~~~~a~~~~~~~--~~dlvl~D~~~p~~~g~~~~~~l~~~~~~~~i~vi~~~~~~~~~~~~~~~Ga~~~l~kp 83 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYKEL--KPDIVTMDITMPEMNGIDAIKEIMKIDPNAKIIVCSAMGQQAMVIEAIKAGAKDFIVNT 83 (237)
T ss_dssp EEEECCCSSSTTHHHHHHH--CCSCEEEECCSTTSSHHHHHHHHHHHSSSCCEEEECCSSTHHHHHHHHHTTCCEEEESH
T ss_pred EEEEECCCHHHHHHHHHhc--CCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCEEEEECCCCHHHHHHHHHCCHHheEeCC
Confidence 4556688999999998875 6999999999999999999998874 345667777777778889999999999999999
Q ss_pred --CCHHHHHHHHHHHHHhh
Q 006057 118 --VRIEELKNIWQHVVRRK 134 (663)
Q Consensus 118 --vs~eeL~~~~q~Vlrr~ 134 (663)
++..+|...+...+...
T Consensus 84 ~~~~~~~l~~~i~~~~~~~ 102 (237)
T 3cwo_X 84 AAVENPSLITQIAQTFGSQ 102 (237)
T ss_dssp HHHHCTHHHHHHHHHHTGG
T ss_pred cccChHHHHHHHHHHhCCC
Confidence 77778888777766543
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.13 E-value=0.00051 Score=68.41 Aligned_cols=97 Identities=18% Similarity=0.127 Sum_probs=71.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
..|.|||||||++..+..|..+|+.+|++|..+.. .....+|+||+|+.+|+..+. ..+|
T Consensus 9 l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~---------~~~~~~~~ii~d~~~~~~~~~-----------~~~i 68 (254)
T 2ayx_A 9 LSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG---------QEPTPEDVLITDEVVSKKWQG-----------RAVV 68 (254)
T ss_dssp TTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS---------CCCCTTCEEEEESSCSCCCCS-----------SEEE
T ss_pred cCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC---------CCCCcCcEEEEcCCCcccccc-----------ceEE
Confidence 45889999999999999999999999999988764 112469999999999886431 1255
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.++...... ....+...++.||+...++...+.+++.
T Consensus 69 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~~~ 105 (254)
T 2ayx_A 69 TFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARIYL 105 (254)
T ss_dssp EECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHHHT
T ss_pred EEecccCCC----cccccCCceeccccchHHHHHHHHHHhh
Confidence 555432210 1123456899999999888888777653
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=96.81 E-value=0.0015 Score=75.58 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=78.3
Q ss_pred HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEEEEecCCChHHHHHH
Q 006057 27 LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVIMLSGNGDPKLVMKG 105 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~dIPVIILSA~~d~e~v~kA 105 (663)
.+.|...|++.||+|..+.+.++|+..++++ ..+++||+|+.++ +.++++.|+ ...++||++++.......+.-.
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~~-~~i~avIld~d~~---~~~ll~~Ir~~~~~iPVFl~~~~~~~~~~~~~ 94 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIENN-ARLCGVIFDWDKY---NLELCEEISKMNENLPLYAFANTYSTLDVSLN 94 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHHC-TTEEEEEEEHHHH---HHHHHHHHHHHCTTCEEEEECCTTCCCCGGGT
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHhC-CCceEEEEecccc---HHHHHHHHHHhCCCCCEEEEecCCcccccchh
Confidence 4456688888999999999999999999986 4799999999886 788999887 4569999999887553333222
Q ss_pred HhcCCceEEeCCCC-HHHHHHHHHHHHHh
Q 006057 106 ITHGACDYLLKPVR-IEELKNIWQHVVRR 133 (663)
Q Consensus 106 l~aGA~DYLlKPvs-~eeL~~~~q~Vlrr 133 (663)
...++++|+.+..+ .+.+...+...+++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (715)
T 3n75_A 95 DLRLQISFFEYALGAAEDIANKIKQTTDE 123 (715)
T ss_dssp TSCCEEEEECCCTTCHHHHHHHHHHHHHH
T ss_pred hhhccCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 24578999998864 55555556555544
No 114
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=96.09 E-value=0.031 Score=49.95 Aligned_cols=105 Identities=19% Similarity=0.182 Sum_probs=80.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc---cCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL---EMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~---~~dIPV 90 (663)
.-.||+|-.|-.....+++++....|+++....... ....|+|+|++.+-.. .+.. ...--+
T Consensus 12 ~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~~~--------e~~AdlIfCEYlLLPe-------~ifS~k~~~~~dl 76 (121)
T 3q7r_A 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQYKQ--------ELSADLVVCEYSLLPR-------EIRSPKSLEGSFV 76 (121)
T ss_dssp CEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSCCC--------CTTEEEEEEEGGGSCT-------TCCCCTTCCSCEE
T ss_pred CcEEEEEecCchhhHHHHHhcCCcceeEEeccccCC--------cccceeEEEeeecChH-------HhcCCCCCCcccE
Confidence 346899988888888999999888999887643211 2357999999865221 1211 123457
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++-..-+.+.+.+.+..||. ||+.|+.+.-|..+|+..+|..
T Consensus 77 iVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrqh 119 (121)
T 3q7r_A 77 LVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQH 119 (121)
T ss_dssp EEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHHC
T ss_pred EEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhcc
Confidence 777777788999999999999 9999999999999999998754
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=95.76 E-value=0.066 Score=50.98 Aligned_cols=82 Identities=16% Similarity=0.305 Sum_probs=63.6
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC-CCCCCCHH--HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE------eC
Q 006057 46 QAITALKLLRENKNKFDLVISDV-HMPDMDGF--KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL------LK 116 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv-~MPdmDG~--eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL------lK 116 (663)
...+.++.+... ...++++.++ .++.++|+ ++++.++...++|||.+++....+.+.++++.||++++ .+
T Consensus 131 ~~~~~i~~~~~~-~~~~vli~~~~~~g~~~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~ 209 (237)
T 3cwo_X 131 LLRDWVVEVEKR-GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 209 (237)
T ss_dssp EHHHHHHHHHHH-TCSEEEEEETTTTTCCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTT
T ss_pred CHHHHHHHHhhc-CCCeEEEEecCCCCccccccHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcC
Confidence 455666655543 2457899997 66767774 46677766678999999999999999999999999985 78
Q ss_pred CCCHHHHHHHHH
Q 006057 117 PVRIEELKNIWQ 128 (663)
Q Consensus 117 Pvs~eeL~~~~q 128 (663)
|++..+++..++
T Consensus 210 ~~~~~~~~~~l~ 221 (237)
T 3cwo_X 210 EIDVRELKEYLK 221 (237)
T ss_dssp SSCHHHHHHHHH
T ss_pred CCCHHHHHHHHH
Confidence 999999877543
No 116
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=94.89 E-value=0.5 Score=44.58 Aligned_cols=119 Identities=14% Similarity=0.142 Sum_probs=83.0
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHh
Q 006057 13 SGLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MDG-FKLLELVG 83 (663)
Q Consensus 13 ~glRVLIV----DDD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPd-mDG-~eLLe~Ir 83 (663)
...+|++. |-+..-...+..+|+..||+|+.. ...++.++.+.+. .||+|.+-..+.. +.. -++++.++
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~--~~diV~lS~~~~~~~~~~~~~i~~L~ 94 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAAVQE--DVDVIGVSILNGAHLHLMKRLMAKLR 94 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHHHHT--TCSEEEEEESSSCHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEeechhhHHHHHHHHHHHH
Confidence 35688888 788888999999999999999843 4677888888765 7999998876642 221 23445555
Q ss_pred cc--CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 84 LE--MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 84 ~~--~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
.. .+++|++ .+..-......+.+.|++.++..-.+..+....++.++..+
T Consensus 95 ~~g~~~i~v~v-GG~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~~~~~ 146 (161)
T 2yxb_A 95 ELGADDIPVVL-GGTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKLAEEK 146 (161)
T ss_dssp HTTCTTSCEEE-EECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred hcCCCCCEEEE-eCCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHHHHHh
Confidence 43 2577665 44444444555678999987766667677777777776554
No 117
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=92.13 E-value=0.78 Score=45.76 Aligned_cols=99 Identities=17% Similarity=0.213 Sum_probs=69.0
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 006057 14 GLRVLAVDD----DPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVH------MPDMDGFKLLELV 82 (663)
Q Consensus 14 glRVLIVDD----D~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~------MPdmDG~eLLe~I 82 (663)
|..+++++- ++.....+-+.+++.+..+. .+.+.++|.++... .+|+|.+-++ .+...++++++.+
T Consensus 101 Gad~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~li~~l 177 (229)
T 3q58_A 101 GADIIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCSTVNEGISCHQK---GIEFIGTTLSGYTGPITPVEPDLAMVTQL 177 (229)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSSSCCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCChHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHhC---CCCEEEecCccCCCCCcCCCCCHHHHHHH
Confidence 445555553 23333344444455676654 67788888877754 5898865322 2334568889888
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 83 r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+.. ++|||.-.+-...+.+.+++++||+.+++-
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 178 SHA-GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp HTT-TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHc-CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 766 899999998888999999999999999864
No 118
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=92.00 E-value=1.7 Score=44.69 Aligned_cols=100 Identities=16% Similarity=0.088 Sum_probs=71.2
Q ss_pred HHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-----CHHHHHHHHhccCCCcEEEEecCCChHHH
Q 006057 30 LETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPDM-----DGFKLLELVGLEMDLPVIMLSGNGDPKLV 102 (663)
Q Consensus 30 L~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MPdm-----DG~eLLe~Ir~~~dIPVIILSA~~d~e~v 102 (663)
..+.|.+.||.|. ++.+...|.++..- .+++| +.+..|-. ..+++++.+++..++|||+=.+-...+.+
T Consensus 127 aa~~L~~~Gf~Vlpy~~dd~~~akrl~~~---G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~~~vPVI~eGGI~TPsDA 202 (265)
T 1wv2_A 127 AAEQLVKDGFDVMVYTSDDPIIARQLAEI---GCIAV-MPLAGLIGSGLGICNPYNLRIILEEAKVPVLVDAGVGTASDA 202 (265)
T ss_dssp HHHHHHTTTCEEEEEECSCHHHHHHHHHS---CCSEE-EECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHH
T ss_pred HHHHHHHCCCEEEEEeCCCHHHHHHHHHh---CCCEE-EeCCccCCCCCCcCCHHHHHHHHhcCCCCEEEeCCCCCHHHH
Confidence 4455566799987 44566666655543 47777 55444422 23788898888889999987788889999
Q ss_pred HHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 006057 103 MKGITHGACDYLL-----KPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 103 ~kAl~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr 133 (663)
.++++.||++.++ |.-++..+...+...++.
T Consensus 203 a~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~a 238 (265)
T 1wv2_A 203 AIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAIVA 238 (265)
T ss_dssp HHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999875 445577777776666543
No 119
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=90.35 E-value=1.4 Score=43.97 Aligned_cols=99 Identities=19% Similarity=0.223 Sum_probs=67.8
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC------CCCCCHHHHHHHH
Q 006057 14 GLRVLAVDD----DPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVH------MPDMDGFKLLELV 82 (663)
Q Consensus 14 glRVLIVDD----D~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~------MPdmDG~eLLe~I 82 (663)
|..+++++- ++.....+-+.+++.+..+. .+.+.+++.++... .+|+|.+-++ .+...++++++.+
T Consensus 101 Gad~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~~---Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 101 GAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADCSSVDDGLACQRL---GADIIGTTMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp TCSEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECCSHHHHHHHHHT---TCSEEECTTTTSSSSSCCSSCCHHHHHHH
T ss_pred CCCEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCCCHHHHHHHHhC---CCCEEEEcCccCCCCCCCCCCCHHHHHHH
Confidence 444555543 23333344444455576654 66788888877654 5898864322 1234568888888
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 83 r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+.. ++|||.-.+-...+.+.+++++||+.+++-
T Consensus 178 ~~~-~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 178 HDA-GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp HHT-TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred Hhc-CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 766 899999988888999999999999998764
No 120
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=88.99 E-value=9.4 Score=34.69 Aligned_cols=109 Identities=10% Similarity=-0.073 Sum_probs=72.5
Q ss_pred eCCHHHHHHHHHHHHhCCCEEE---EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-C-HHHHHHHHhcc-C-CCcEEEE
Q 006057 21 DDDPTCLLLLETLLRRCQYHVT---TTSQAITALKLLRENKNKFDLVISDVHMPDM-D-GFKLLELVGLE-M-DLPVIML 93 (663)
Q Consensus 21 DDD~~~r~iL~~lL~~~gy~V~---tasdg~EALelLre~k~~pDLVIlDv~MPdm-D-G~eLLe~Ir~~-~-dIPVIIL 93 (663)
|-+..-...+..+|+..||+|+ .....++.++.+.+. ++|+|.+-..+..- . --++++.+++. . +++|++=
T Consensus 14 d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a~~~--~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~i~v~vG 91 (137)
T 1ccw_A 14 DCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAAIET--KADAILVSSLYGQGEIDCKGLRQKCDEAGLEGILLYVG 91 (137)
T ss_dssp CCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHHHHH--TCSEEEEEECSSTHHHHHTTHHHHHHHTTCTTCEEEEE
T ss_pred chhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHhc--CCCEEEEEecCcCcHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 4556777889999999999988 445788888888875 69999998776421 1 11244455432 2 5666543
Q ss_pred ecC----CChH-HHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 94 SGN----GDPK-LVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 94 SA~----~d~e-~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
-+. .+.. ....+.+.|++.|...--+..++...+...+
T Consensus 92 G~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 92 GNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGIADLKKDL 134 (137)
T ss_dssp ESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHHHHHHHHH
T ss_pred CCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHHHHHHHHh
Confidence 321 1222 2456788999999887778877776665543
No 121
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=86.40 E-value=8.6 Score=38.62 Aligned_cols=112 Identities=16% Similarity=0.177 Sum_probs=74.4
Q ss_pred CCCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHH
Q 006057 12 PSGLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MDGF-KLLELV 82 (663)
Q Consensus 12 P~glRVLIV----DDD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPd-mDG~-eLLe~I 82 (663)
..+-+||++ |-|..-..++..+|+..||+|+.. ...++.++.+.+. +||+|.+-..+.. +..+ ++++.+
T Consensus 121 ~~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~~~~--~~d~V~lS~l~~~~~~~~~~~i~~l 198 (258)
T 2i2x_B 121 KTKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAVQKE--KPIMLTGTALMTTTMYAFKEVNDML 198 (258)
T ss_dssp CCSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHHHHH--CCSEEEEECCCTTTTTHHHHHHHHH
T ss_pred CCCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeeccCCHHHHHHHHHHH
Confidence 345678887 677888899999999999998633 4567777777765 6999999887653 4443 355666
Q ss_pred hcc-CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 83 GLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 83 r~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
+.. .++||++-......+.. -..||+.|.... .+....++.++
T Consensus 199 ~~~~~~~~v~vGG~~~~~~~~---~~igad~~~~da---~~av~~~~~l~ 242 (258)
T 2i2x_B 199 LENGIKIPFACGGGAVNQDFV---SQFALGVYGEEA---ADAPKIADAII 242 (258)
T ss_dssp HTTTCCCCEEEESTTCCHHHH---HTSTTEEECSST---THHHHHHHHHH
T ss_pred HhcCCCCcEEEECccCCHHHH---HHcCCeEEECCH---HHHHHHHHHHH
Confidence 543 56787765555554433 367887776544 34444444444
No 122
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=85.91 E-value=7.1 Score=40.92 Aligned_cols=103 Identities=14% Similarity=0.140 Sum_probs=74.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC---CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC---QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~---gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
.+|+.|+|.|+.+.+.|..+|... .|+|..+++.+.+.+.++++ .+||+|+|-.+.... .......+|
T Consensus 21 ~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~~~--~~dilli~e~~~~~~-------~~~~~~~~v 91 (373)
T 3fkq_A 21 KIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVKEY--RIDVLIAEEDFNIDK-------SEFKRNCGL 91 (373)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHHHH--TCSEEEEETTCCCCG-------GGGCSSCEE
T ss_pred eEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHhcC--CCCEEEEcchhhhhh-------hhhcccCcE
Confidence 468899999999999999999653 58999999999999998876 799999998775421 111234567
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHH
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vl 131 (663)
++++.....+ ...-...+.|--+.+++...+...+
T Consensus 92 ~~l~~~~~~~------~~~~~~~i~kyq~~~~i~~ei~~~~ 126 (373)
T 3fkq_A 92 AYFTGTPGIE------LIKDEIAICKYQRVDVIFKQILGVY 126 (373)
T ss_dssp EEEESCTTCC------EETTEEEEETTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCC------cCCCCceeeccCCHHHHHHHHHHHH
Confidence 7776543321 0112347889889988877666555
No 123
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.29 E-value=1.3 Score=36.44 Aligned_cols=52 Identities=27% Similarity=0.409 Sum_probs=41.0
Q ss_pred ceeeehhhhHHHHHHHHHhcCCCcc---hHHHHhhcCCCCCCHHHHHHhhhhhHhhhhhh
Q 006057 201 RVVWSVELHRKFVAAVNQLGIDKAV---PKKILDLMNVEKLTRENVASHLQKYRLYLKRI 257 (663)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dkA~---pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~rl 257 (663)
+-.||.|-+..|+++|..+|.+... =++|-+.| ++-|..+|..|.++ ||.++
T Consensus 8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~--~~Rt~~qcr~r~~~---~l~~~ 62 (75)
T 2yum_A 8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADEL--GNRTAKQVASQVQK---YFIKL 62 (75)
T ss_dssp SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHH--SSSCHHHHHHHHHH---HHGGG
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHh--CCCCHHHHHHHHHH---HHHHH
Confidence 4579999999999999999964421 24677777 78999999998877 56553
No 124
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=85.14 E-value=5.7 Score=38.34 Aligned_cols=99 Identities=12% Similarity=0.061 Sum_probs=67.8
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHhc
Q 006057 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPD-MDGF-KLLELVGL 84 (663)
Q Consensus 14 glRVLIV----DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MPd-mDG~-eLLe~Ir~ 84 (663)
.-+||+. |-+..-...+..+|+..||+|.... ..++.++.+++. +||+|.+-..+.. +..+ ++++.++.
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~--~~d~v~lS~~~~~~~~~~~~~i~~l~~ 165 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKY--QPDIVGMSALLTTTMMNMKSTIDALIA 165 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHH--CCSEEEEECCSGGGTHHHHHHHHHHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccccHHHHHHHHHHHHh
Confidence 4478888 7778889999999999999998643 456667777765 6999999887653 3332 34556654
Q ss_pred c---CCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 85 E---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 85 ~---~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
. +++||++-.+....+.. .+.||+.|..-.
T Consensus 166 ~~~~~~~~v~vGG~~~~~~~~---~~~gad~~~~da 198 (210)
T 1y80_A 166 AGLRDRVKVIVGGAPLSQDFA---DEIGADGYAPDA 198 (210)
T ss_dssp TTCGGGCEEEEESTTCCHHHH---HHHTCSEECSSH
T ss_pred cCCCCCCeEEEECCCCCHHHH---HHcCCeEEECCH
Confidence 3 34787766555554433 456988776544
No 125
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=84.34 E-value=7.6 Score=39.99 Aligned_cols=98 Identities=19% Similarity=0.181 Sum_probs=67.3
Q ss_pred HHHHhCCCEEE-EE-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----HHHHHHHhc-cCC-CcEEEEecCCChHHH
Q 006057 32 TLLRRCQYHVT-TT-SQAITALKLLRENKNKFDLVISDVHMPDMDG-----FKLLELVGL-EMD-LPVIMLSGNGDPKLV 102 (663)
Q Consensus 32 ~lL~~~gy~V~-ta-sdg~EALelLre~k~~pDLVIlDv~MPdmDG-----~eLLe~Ir~-~~d-IPVIILSA~~d~e~v 102 (663)
+.|.+.||.|. .| .+...|.++..- .+++| +.+-.|-..| .++++.++. ..+ +|||+=.+-...+.+
T Consensus 118 ~~L~k~Gf~Vlpy~~~D~~~ak~l~~~---G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~~~vPVI~~GGI~tpsDA 193 (268)
T 2htm_A 118 ERLIEEDFLVLPYMGPDLVLAKRLAAL---GTATV-MPLAAPIGSGWGVRTRALLELFAREKASLPPVVVDAGLGLPSHA 193 (268)
T ss_dssp HHHHHTTCEECCEECSCHHHHHHHHHH---TCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTTTSSCBEEESCCCSHHHH
T ss_pred HHHHHCCCEEeeccCCCHHHHHHHHhc---CCCEE-EecCccCcCCcccCCHHHHHHHHHhcCCCCeEEEeCCCCCHHHH
Confidence 44445699977 34 566555554443 46766 6655543333 456777766 677 999987788889999
Q ss_pred HHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 006057 103 MKGITHGACDYLL-----KPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 103 ~kAl~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr 133 (663)
..+++.||++.++ |.-++..+...+..++..
T Consensus 194 a~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av~a 229 (268)
T 2htm_A 194 AEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAVEA 229 (268)
T ss_dssp HHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999999865 545577777776666543
No 126
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=84.09 E-value=8.2 Score=41.20 Aligned_cols=99 Identities=19% Similarity=0.215 Sum_probs=67.3
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 006057 14 GLRVLAVD----DDPTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (663)
Q Consensus 14 glRVLIVD----DD~~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MPd------------mD 74 (663)
+..+++|| +.+...+.++.+-+.. +..|. .+.+.++|..+... ..|.|.+-+. |+ ..
T Consensus 120 Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~a---GAD~I~vG~g-pGs~~~tr~~~g~g~p 195 (366)
T 4fo4_A 120 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIG-PGSICTTRIVTGVGVP 195 (366)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTBCHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHc---CCCEEEEecC-CCCCCCcccccCcccc
Confidence 55677776 3345555666666655 55543 57889999888765 4798888321 21 23
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 75 GFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 75 G~eLLe~Ir---~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.++++..+. ...++|||.--+-.+...+.+++.+||+...+=
T Consensus 196 ~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 196 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred hHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 455555443 245799998888888899999999999887554
No 127
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=83.56 E-value=3.5 Score=40.63 Aligned_cols=101 Identities=14% Similarity=0.103 Sum_probs=68.5
Q ss_pred CCCcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEE--eCCCC-CCCHH-HHHH
Q 006057 12 PSGLRVLAV----DDDPTCLLLLETLLRRCQYHVTTTS---QAITALKLLRENKNKFDLVIS--DVHMP-DMDGF-KLLE 80 (663)
Q Consensus 12 P~glRVLIV----DDD~~~r~iL~~lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIl--Dv~MP-dmDG~-eLLe 80 (663)
+..-+|++. |-+..-..++..+|+..||+|+... ..++.++.+.+. +||+|.+ -..|. .+..+ ++++
T Consensus 90 ~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~--~~d~v~l~~S~l~~~~~~~~~~~i~ 167 (215)
T 3ezx_A 90 EEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKH--KGEKVLLVGSALMTTSMLGQKDLMD 167 (215)
T ss_dssp --CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHT--TTSCEEEEEECSSHHHHTHHHHHHH
T ss_pred CCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHc--CCCEEEEEchhcccCcHHHHHHHHH
Confidence 334578877 6778888999999999999998653 567777888775 7999999 77663 23332 3455
Q ss_pred HHhcc-C--CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 81 LVGLE-M--DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 81 ~Ir~~-~--dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
.+++. . ++||++-.+....+.+ -+.||+.|-...
T Consensus 168 ~l~~~~~~~~v~v~vGG~~~~~~~a---~~iGad~~~~dA 204 (215)
T 3ezx_A 168 RLNEEKLRDSVKCMFGGAPVSDKWI---EEIGADATAENA 204 (215)
T ss_dssp HHHHTTCGGGSEEEEESSSCCHHHH---HHHTCCBCCSSH
T ss_pred HHHHcCCCCCCEEEEECCCCCHHHH---HHhCCeEEECCH
Confidence 56543 2 5787765555554443 356998886544
No 128
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=82.75 E-value=7.3 Score=42.14 Aligned_cols=100 Identities=14% Similarity=0.208 Sum_probs=66.4
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCC------C-----CCCCHH
Q 006057 14 GLRVLAVD----DDPTCLLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVH------M-----PDMDGF 76 (663)
Q Consensus 14 glRVLIVD----DD~~~r~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~------M-----PdmDG~ 76 (663)
|..++++| +.....+.++.+-+..+..|. .+.+.++|..++.. .+|.|++-+. . .+...+
T Consensus 156 GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~a---GAD~I~vG~g~Gs~~~tr~~~g~g~p~~ 232 (400)
T 3ffs_A 156 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 232 (400)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHT---TCSEEEECC---------CCSCBCCCHH
T ss_pred CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHc---CCCEEEEeCCCCcCcccccccccchhHH
Confidence 45677775 233445566555555566655 57889999887764 5898888321 0 012345
Q ss_pred HHHHHHhc---cCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 77 KLLELVGL---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 77 eLLe~Ir~---~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+++..+.. ..++|||.-.+-.+...+.+++.+||+...+-
T Consensus 233 ~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~vG 275 (400)
T 3ffs_A 233 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 275 (400)
T ss_dssp HHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEEC
Confidence 66655532 35799998888888899999999999987654
No 129
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=82.59 E-value=15 Score=37.54 Aligned_cols=116 Identities=10% Similarity=0.057 Sum_probs=78.4
Q ss_pred CCcEEEEE----eCCHHHHHHHHHH--------HHhC-CCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCCC---
Q 006057 13 SGLRVLAV----DDDPTCLLLLETL--------LRRC-QYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPDM--- 73 (663)
Q Consensus 13 ~glRVLIV----DDD~~~r~iL~~l--------L~~~-gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPdm--- 73 (663)
...+|++. |-+..-..++..+ |+.. ||+|+.. -..++.++.+++. ++|+|.+-..+...
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa~e~--~~d~VglS~l~t~~~~~ 196 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKAVEL--EADVLLVSQTVTQKNVH 196 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCTTSHH
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHHHHc--CCCEEEEEeecCCccch
Confidence 34567665 6677777888888 9999 9999753 3677778888765 79999999888652
Q ss_pred -CHH-HHHHHHhcc---CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 74 -DGF-KLLELVGLE---MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 74 -DG~-eLLe~Ir~~---~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
..+ ++++.+++. .+++||+=-+..+.+ .+.+.||+.|..--....++...+...++.
T Consensus 197 ~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a~~l~~~~~~ 258 (262)
T 1xrs_B 197 IQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVATFAVKTLND 258 (262)
T ss_dssp HHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHHHHHHHHHHh
Confidence 222 244455433 236665444433333 366789999998888888887776655543
No 130
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=81.75 E-value=3 Score=35.13 Aligned_cols=46 Identities=13% Similarity=0.211 Sum_probs=38.3
Q ss_pred CceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhh
Q 006057 200 PRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKY 250 (663)
Q Consensus 200 ~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQky 250 (663)
.+-.||.|-+.+|++||+.+| ++ =++|.++| .+-|..++..|.++|
T Consensus 17 ~~~~WT~eEd~~Ll~~v~~~G-~~--W~~IA~~v--~~RT~~qcr~r~~~~ 62 (79)
T 2yus_A 17 AGREWTEQETLLLLEALEMYK-DD--WNKVSEHV--GSRTQDECILHFLRL 62 (79)
T ss_dssp CSCCCCHHHHHHHHHHHHHSS-SC--HHHHHHHH--SSCCHHHHHHHHTTS
T ss_pred cCCCcCHHHHHHHHHHHHHhC-CC--HHHHHHHc--CCCCHHHHHHHHHHh
Confidence 456799999999999999999 33 26788876 689999999988775
No 131
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=81.04 E-value=17 Score=36.99 Aligned_cols=97 Identities=11% Similarity=0.031 Sum_probs=63.4
Q ss_pred EEEEEeC--CHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC---CCCCCCHHHHHHHHhcc-C-C
Q 006057 16 RVLAVDD--DPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDV---HMPDMDGFKLLELVGLE-M-D 87 (663)
Q Consensus 16 RVLIVDD--D~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv---~MPdmDG~eLLe~Ir~~-~-d 87 (663)
.|+|+.. +......+.......|..+. .+.+.+|+...+.. .+|+|-+.- ..... +++.++.+... + +
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~~---Gad~IGv~~r~l~~~~~-dl~~~~~l~~~v~~~ 213 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALKA---GAKVIGVNARDLMTLDV-DRDCFARIAPGLPSS 213 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH---TCSEEEEESBCTTTCCB-CTTHHHHHGGGSCTT
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHC---CCCEEEECCCccccccc-CHHHHHHHHHhCccc
Confidence 3555432 23334444555566787654 67788887766654 478887752 22121 24555555433 3 7
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+|||..++-...+.+.++.++||+++++-
T Consensus 214 ~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 214 VIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp SEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 89999999888999999999999999874
No 132
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=80.89 E-value=11 Score=35.60 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=52.3
Q ss_pred CCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC
Q 006057 38 QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG 109 (663)
Q Consensus 38 gy~V-~tasdg~EALelLre~k~~pDLVIlDv~MPd-------mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aG 109 (663)
+..+ ..+.+..++...... .+|.|+++-..|. ..+++.++.++...++||++..+-. .+.+.++++.|
T Consensus 108 ~~~~~v~~~t~~e~~~~~~~---g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~pvia~GGI~-~~nv~~~~~~G 183 (215)
T 1xi3_A 108 NLIIGASVYSLEEALEAEKK---GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESVKIPVVAIGGIN-KDNAREVLKTG 183 (215)
T ss_dssp TSEEEEEESSHHHHHHHHHH---TCSEEEEECSSCC----CCCCCHHHHHHHHHHHCSSCEEEESSCC-TTTHHHHHTTT
T ss_pred CCEEEEecCCHHHHHHHHhc---CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhCCCCEEEECCcC-HHHHHHHHHcC
Confidence 4443 346777777665443 5899998754443 3578888877665689998877666 77788889999
Q ss_pred CceEEe
Q 006057 110 ACDYLL 115 (663)
Q Consensus 110 A~DYLl 115 (663)
|+.+..
T Consensus 184 a~gv~v 189 (215)
T 1xi3_A 184 VDGIAV 189 (215)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998753
No 133
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=79.33 E-value=8.1 Score=44.48 Aligned_cols=116 Identities=12% Similarity=0.078 Sum_probs=77.8
Q ss_pred CcEEEEE----eCCHHHHHH----HHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC----CCHHH-
Q 006057 14 GLRVLAV----DDDPTCLLL----LETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD----MDGFK- 77 (663)
Q Consensus 14 glRVLIV----DDD~~~r~i----L~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPd----mDG~e- 77 (663)
..+|++. |-+..-... +..+|+..||+|+.. ...++.++.+.+. .+|+|.+-..|.. +..+.
T Consensus 602 kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA~Ee--dADVVGLSsLLTt~dihL~~Mke 679 (763)
T 3kp1_A 602 PLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAAIEL--KADAILASTIISHDDIHYKNMKR 679 (763)
T ss_dssp CCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHHHHT--TCSEEEEECCCCGGGHHHHHHHH
T ss_pred CCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEeccccCchhhHHHHHH
Confidence 4578877 555554433 357889999999854 3678888888875 7999999988865 33333
Q ss_pred HHHHHhccC---CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 78 LLELVGLEM---DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 78 LLe~Ir~~~---dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+++.+++.. .++||+=-+....+. +.+.||+.|........++...|...++.+
T Consensus 680 vIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~er 736 (763)
T 3kp1_A 680 IHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRREM 736 (763)
T ss_dssp HHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHHHh
Confidence 445554332 356655433344333 457999999998888888877776666543
No 134
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=79.03 E-value=5.6 Score=40.12 Aligned_cols=71 Identities=17% Similarity=0.241 Sum_probs=50.0
Q ss_pred CceEEEEeCCCCC--CC--------------------HHHHHHHHhccC-CCcEEEEecCC------ChHHHHHHHhcCC
Q 006057 60 KFDLVISDVHMPD--MD--------------------GFKLLELVGLEM-DLPVIMLSGNG------DPKLVMKGITHGA 110 (663)
Q Consensus 60 ~pDLVIlDv~MPd--mD--------------------G~eLLe~Ir~~~-dIPVIILSA~~------d~e~v~kAl~aGA 110 (663)
..|+|.+++-..+ .| .+++++.++... ++||++|+-.. -...+..+.++|+
T Consensus 44 G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~ 123 (262)
T 2ekc_A 44 GTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGI 123 (262)
T ss_dssp TCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 5899998774422 23 345567776665 89999985332 1356778999999
Q ss_pred ceEEeCCCCHHHHHHHHHHH
Q 006057 111 CDYLLKPVRIEELKNIWQHV 130 (663)
Q Consensus 111 ~DYLlKPvs~eeL~~~~q~V 130 (663)
++++.-.+..+++...+..+
T Consensus 124 dgvii~dl~~ee~~~~~~~~ 143 (262)
T 2ekc_A 124 DGFIVPDLPPEEAEELKAVM 143 (262)
T ss_dssp CEEECTTCCHHHHHHHHHHH
T ss_pred CEEEECCCCHHHHHHHHHHH
Confidence 99999989888876655544
No 135
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=78.91 E-value=10 Score=40.29 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=64.7
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCCHH
Q 006057 14 GLRVLAVD----DDPTCLLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----------DMDGF 76 (663)
Q Consensus 14 glRVLIVD----DD~~~r~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----------dmDG~ 76 (663)
|..+++|| +.....+.++.+-+..+..|. .+.+.++|..++.. ..|.|.+-+.-. +...+
T Consensus 117 Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~a---GaD~I~VG~~~Gs~~~tr~~~g~g~p~~ 193 (361)
T 3khj_A 117 GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIEN---GADGIKVGIGPGSICTTRIVAGVGVPQI 193 (361)
T ss_dssp TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHT---TCSEEEECSSCCTTCCHHHHTCBCCCHH
T ss_pred CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHc---CcCEEEEecCCCcCCCcccccCCCCCcH
Confidence 44566664 233445666666565566654 57888888877754 578888732110 12334
Q ss_pred HHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 77 KLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 77 eLLe~Ir---~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+++..+. ...++|||.-.+-.+.+.+.+++.+||+...+-
T Consensus 194 ~~i~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 236 (361)
T 3khj_A 194 TAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMIG 236 (361)
T ss_dssp HHHHHHHHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 5554442 234799998888788899999999999987654
No 136
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=78.57 E-value=14 Score=37.16 Aligned_cols=85 Identities=12% Similarity=0.101 Sum_probs=59.6
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhcc--CCCcEEEEecCCChHHHHHHHhcCCceE
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLE--MDLPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MPd-------mDG~eLLe~Ir~~--~dIPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
+|.+.+|+.+.... .+|.|.+.-..|. .-|++.++++... .++|||.+.+- ..+.+.+++++||+++
T Consensus 141 S~ht~~Ea~~A~~~---GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~~~iPvvAiGGI-~~~ni~~~~~aGa~gv 216 (243)
T 3o63_A 141 STHDPDQVAAAAAG---DADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGGDDKPWFAIGGI-NAQRLPAVLDAGARRI 216 (243)
T ss_dssp EECSHHHHHHHHHS---SCSEEEECCSSCCCC-----CCCHHHHHHHHTC---CCCEEEESSC-CTTTHHHHHHTTCCCE
T ss_pred eCCCHHHHHHHhhC---CCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhccCCCCEEEecCC-CHHHHHHHHHcCCCEE
Confidence 67888888877653 5899998654432 2368888877654 48999999887 5667889999999998
Q ss_pred Ee-----CCCCHHHHHHHHHHHH
Q 006057 114 LL-----KPVRIEELKNIWQHVV 131 (663)
Q Consensus 114 Ll-----KPvs~eeL~~~~q~Vl 131 (663)
.+ +.-++.+....+...+
T Consensus 217 av~sai~~a~dp~~a~~~l~~~~ 239 (243)
T 3o63_A 217 VVVRAITSADDPRAAAEQLRSAL 239 (243)
T ss_dssp EESHHHHTCSSHHHHHHHHHHHH
T ss_pred EEeHHHhCCCCHHHHHHHHHHHH
Confidence 65 4455555544444443
No 137
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=78.43 E-value=9.9 Score=36.64 Aligned_cols=74 Identities=20% Similarity=0.276 Sum_probs=52.4
Q ss_pred CCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCC-------CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcC
Q 006057 38 QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPD-------MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHG 109 (663)
Q Consensus 38 gy~V-~tasdg~EALelLre~k~~pDLVIlDv~MPd-------mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aG 109 (663)
+..+ ..+.+.+++.+.... ..|.|+++-..+. .-+++.++.++...++|||+..+- ..+.+.+++++|
T Consensus 110 ~~~ig~sv~t~~~~~~a~~~---gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~~~pvia~GGI-~~~nv~~~~~~G 185 (221)
T 1yad_A 110 HLHIGRSVHSLEEAVQAEKE---DADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRISIPVIAIGGM-TPDRLRDVKQAG 185 (221)
T ss_dssp TCEEEEEECSHHHHHHHHHT---TCSEEEEECCC----------CHHHHHHHHHHHCCSCEEEESSC-CGGGHHHHHHTT
T ss_pred CCEEEEEcCCHHHHHHHHhC---CCCEEEECCccccCCCCCCCCCCHHHHHHHHHhCCCCEEEECCC-CHHHHHHHHHcC
Confidence 4443 356788888776653 5899998764332 236778877765568999988777 778899999999
Q ss_pred CceEEe
Q 006057 110 ACDYLL 115 (663)
Q Consensus 110 A~DYLl 115 (663)
|+.+..
T Consensus 186 a~gv~v 191 (221)
T 1yad_A 186 ADGIAV 191 (221)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998754
No 138
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=77.07 E-value=5 Score=39.37 Aligned_cols=53 Identities=9% Similarity=0.182 Sum_probs=39.2
Q ss_pred HHHHHHHhccCCCcEEEEecCCC------hHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGD------PKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d------~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q 128 (663)
+++++.+++..++||++++.... .+.+..++++||+.++.-....++....++
T Consensus 69 ~~~i~~i~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~ 127 (248)
T 1geq_A 69 FWIVKEFRRHSSTPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTE 127 (248)
T ss_dssp HHHHHHHHTTCCCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHH
T ss_pred HHHHHHHHhhCCCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHH
Confidence 67778887777889998874332 467889999999999997666665544433
No 139
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=77.01 E-value=4.3 Score=33.17 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=40.7
Q ss_pred CCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhhhhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKRI 257 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~rl 257 (663)
..+-.||.|-+..|+++|..+|-+ =..|..+| ++-|..+|+.|.++ |+++.
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~~---W~~Ia~~~--~~Rt~~q~k~r~~~---~l~~~ 57 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGRR---WTKISKLI--GSRTVLQVKSYARQ---YFKNK 57 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCSC---HHHHHHHH--SSSCHHHHHHHHHH---HHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHCcC---HHHHHHHc--CCCCHHHHHHHHHH---HHHHH
Confidence 345689999999999999999973 24677766 89999999998776 56653
No 140
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=75.57 E-value=3 Score=35.77 Aligned_cols=57 Identities=25% Similarity=0.307 Sum_probs=37.0
Q ss_pred CCceeeehhhhHHHHHHHHHhcC---CCc--------------chHHHHhhcCCCCCCHHHHHHhhhhhHhhhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGI---DKA--------------VPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~---dkA--------------~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~r 256 (663)
+..-+|.++|-.-|++|+..+.- .|- +-.||....+ .--|+.+|+||||--+...+|
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp~~g~~k~~ls~~gk~~gRNelIs~yI~~~tG-k~RtrKQVSShiQvlk~~~~~ 77 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYPPCGRRKIILSDEGKMYGRNELIARYIKLRTG-KTRTRKQVSSHIQVLARRKSR 77 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSCSSSCCCCCHHHHCCCCCTHHHHHHHHHHHHS-CCCCSHHHHHHHHHHHHHHTT
T ss_pred CcCCcCCHHHHHHHHHHHHHcCCCCccceeecccccccchhHHHHHHHHHHHc-ccCCccchhHHHHHHHHHHhh
Confidence 34568999999999999988732 221 1112322222 345999999999986555443
No 141
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=75.48 E-value=5.3 Score=40.34 Aligned_cols=72 Identities=22% Similarity=0.277 Sum_probs=51.3
Q ss_pred CceEEEEeCCC--CCCCH--------------------HHHHHHHhcc-CCCcEEEEecC------CChHHHHHHHhcCC
Q 006057 60 KFDLVISDVHM--PDMDG--------------------FKLLELVGLE-MDLPVIMLSGN------GDPKLVMKGITHGA 110 (663)
Q Consensus 60 ~pDLVIlDv~M--PdmDG--------------------~eLLe~Ir~~-~dIPVIILSA~------~d~e~v~kAl~aGA 110 (663)
..|+|-+++-. |-+|| +++++.++.. .++||++|+-. .....+..+.++||
T Consensus 44 GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGa 123 (268)
T 1qop_A 44 GADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGV 123 (268)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCC
Confidence 58999998844 22343 4566777776 68999988622 22467888999999
Q ss_pred ceEEeCCCCHHHHHHHHHHHH
Q 006057 111 CDYLLKPVRIEELKNIWQHVV 131 (663)
Q Consensus 111 ~DYLlKPvs~eeL~~~~q~Vl 131 (663)
++++.-.+..+++...++.+.
T Consensus 124 dgii~~d~~~e~~~~~~~~~~ 144 (268)
T 1qop_A 124 DSVLVADVPVEESAPFRQAAL 144 (268)
T ss_dssp CEEEETTCCGGGCHHHHHHHH
T ss_pred CEEEEcCCCHHHHHHHHHHHH
Confidence 999998888877665555443
No 142
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=75.39 E-value=25 Score=41.08 Aligned_cols=118 Identities=12% Similarity=0.018 Sum_probs=78.6
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHhc
Q 006057 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MDG-FKLLELVGL 84 (663)
Q Consensus 14 glRVLIV----DDD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPd-mDG-~eLLe~Ir~ 84 (663)
..||+|. |.+..-..++..+|+..||+|+.. ...++.++.+.+. ++|+|.+-..|.. +.. -++++.++.
T Consensus 604 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~Lr~ 681 (762)
T 2xij_A 604 RPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQAVDA--DVHAVGVSTLAAGHKTLVPELIKELNS 681 (762)
T ss_dssp CCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHHHHHHHHHHHHHHHh
Confidence 4577776 455666778888999999999854 3578888888765 6898888765532 222 234455554
Q ss_pred c-C-CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 85 E-M-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 85 ~-~-dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
. . +++|| +.+..-......+.+.|++.|...--+..++...+...++.+
T Consensus 682 ~G~~dv~Vi-vGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~i~~~l~~~ 732 (762)
T 2xij_A 682 LGRPDILVM-CGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQVLDDIEKC 732 (762)
T ss_dssp TTCTTSEEE-EEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHHHHHHHHHH
T ss_pred cCCCCCEEE-EeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3 2 44444 443222223445678999999997778888888877777544
No 143
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=75.24 E-value=28 Score=40.52 Aligned_cols=117 Identities=13% Similarity=0.021 Sum_probs=78.1
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCH-HHHHHHHhc
Q 006057 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MDG-FKLLELVGL 84 (663)
Q Consensus 14 glRVLIV----DDD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPd-mDG-~eLLe~Ir~ 84 (663)
..||+|. |.+..-..++..+|+..||+|+.. ...++.++.+.+. ++|+|.+-..|.. +.. -++++.++.
T Consensus 596 r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA~e~--~adiVglSsl~~~~~~~~~~vi~~L~~ 673 (727)
T 1req_A 596 RPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQAVEA--DVHVVGVSSLAGGHLTLVPALRKELDK 673 (727)
T ss_dssp CCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHHHHT--TCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHc--CCCEEEEeeecHhHHHHHHHHHHHHHh
Confidence 4577776 556666778888999999999864 3578888888765 6899888765532 222 234555554
Q ss_pred c-C-CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 85 E-M-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 85 ~-~-dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
. . +++|| +.+..-......+.+.|++.|+..-.+..++...+...++.
T Consensus 674 ~G~~~i~Vi-vGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l~~ 723 (727)
T 1req_A 674 LGRPDILIT-VGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKLRA 723 (727)
T ss_dssp TTCTTSEEE-EEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHHHH
T ss_pred cCCCCCEEE-EcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHHHH
Confidence 3 2 44444 44422333344567899999999878888887777666643
No 144
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=74.89 E-value=42 Score=35.74 Aligned_cols=98 Identities=12% Similarity=0.064 Sum_probs=62.5
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 006057 14 GLRVLAVDD----DPTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (663)
Q Consensus 14 glRVLIVDD----D~~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MPd------------mD 74 (663)
|..++.||- .....+.++.+-+.. +..|. .+.+.++|..++.. ..|.|.+.++ |+ ..
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~a---GaD~I~Vg~g-~G~~~~tr~~~g~g~p 187 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASC---GADIIKAGIG-GGSVCSTRIKTGFGVP 187 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHT---TCSEEEECCS-SSSCHHHHHHHCCCCC
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHc---CCCEEEEcCC-CCcCccccccCCccHH
Confidence 556888872 233344444444433 45554 37889998887764 5899998544 22 12
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.++.+..+..... |||.-.+-.+...+.+++.+||+...+-
T Consensus 188 ~l~aI~~~~~~~~-PVIAdGGI~~~~di~kALa~GAd~V~iG 228 (361)
T 3r2g_A 188 MLTCIQDCSRADR-SIVADGGIKTSGDIVKALAFGADFVMIG 228 (361)
T ss_dssp HHHHHHHHTTSSS-EEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhCC-CEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3444444432222 9988888888999999999999887654
No 145
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=74.22 E-value=30 Score=35.17 Aligned_cols=107 Identities=17% Similarity=0.070 Sum_probs=72.0
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 14 GLRVLAVDDDP-TCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~-~~r~iL~~lL~~~gy~V~tas--dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
.++++|+.+.+ .....++.+.+..+-.+.... +.++...++. ..|++|+-... +.-|..+++.+. ..+||
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~----~adv~v~ps~~-e~~~~~~~EAma--~G~Pv 357 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAIP 357 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHT----TCSEEEECBSC-CSSCHHHHHHHH--TTCEE
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHH----HCCEEEeCCCC-CCccHHHHHHHH--CCCCe
Confidence 56788886554 345777788877773344444 4555555654 36888875443 445666777653 46788
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|.- .. ....+.+..| .+++..|-+.++|..++..++.
T Consensus 358 i~s-~~---~~~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 358 IAS-AV---GGLRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp EEE-SS---THHHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred EEc-CC---CCcceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 763 22 3445555567 9999999999999999999886
No 146
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=74.01 E-value=47 Score=31.34 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=65.6
Q ss_pred CcEEEEEeCCH--HHHHHHHHHHHhCCCEEEE----ECCHHHHHHHHHhcCCCceEEEEeCCCC----CCCHHHHHHHHh
Q 006057 14 GLRVLAVDDDP--TCLLLLETLLRRCQYHVTT----TSQAITALKLLRENKNKFDLVISDVHMP----DMDGFKLLELVG 83 (663)
Q Consensus 14 glRVLIVDDD~--~~r~iL~~lL~~~gy~V~t----asdg~EALelLre~k~~pDLVIlDv~MP----dmDG~eLLe~Ir 83 (663)
|...+++-+.+ .....+.+.+++.|..+.. ..+..+.++.+.+. ..|+|.++.... ...+++.++.++
T Consensus 77 Gad~v~v~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~--g~d~i~v~~g~~g~~~~~~~~~~i~~l~ 154 (211)
T 3f4w_A 77 GADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEA--GADMLAVHTGTDQQAAGRKPIDDLITML 154 (211)
T ss_dssp TCSEEEEETTSCHHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHH--TCCEEEEECCHHHHHTTCCSHHHHHHHH
T ss_pred CCCEEEEeCCCChhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHc--CCCEEEEcCCCcccccCCCCHHHHHHHH
Confidence 34444444433 3334555556666776553 23443433444332 478877662110 113567777776
Q ss_pred cc-CCCcEEEEecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHH
Q 006057 84 LE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVV 131 (663)
Q Consensus 84 ~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLl-----KPvs~eeL~~~~q~Vl 131 (663)
.. +++||++-.+-. .+.+.+++++||+.++. +.-++.+....++..+
T Consensus 155 ~~~~~~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~ 207 (211)
T 3f4w_A 155 KVRRKARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVL 207 (211)
T ss_dssp HHCSSCEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHH
T ss_pred HHcCCCcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHH
Confidence 55 478988766654 77888999999998764 4555555444444443
No 147
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=73.35 E-value=26 Score=38.85 Aligned_cols=100 Identities=12% Similarity=0.146 Sum_probs=65.0
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC-----------CCH
Q 006057 14 GLRVLAVDD----DPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD-----------MDG 75 (663)
Q Consensus 14 glRVLIVDD----D~~~r~iL~~lL~~~g-y~V~--tasdg~EALelLre~k~~pDLVIlDv~MPd-----------mDG 75 (663)
|..+++||. .....+.++++-+..+ ..|. .+.+.++|..++.. .+|.|++.+.-.. ...
T Consensus 268 Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~a---Gad~i~vg~g~gsi~~~~~~~g~g~p~ 344 (511)
T 3usb_A 268 SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEA---GANVVKVGIGPGSICTTRVVAGVGVPQ 344 (511)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCHHHHHCCCCCH
T ss_pred ccceEEecccccchhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHh---CCCEEEECCCCccccccccccCCCCCc
Confidence 556777763 2344455555555543 3433 56788888877765 4788887442211 223
Q ss_pred HHHHHHH---hccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 76 FKLLELV---GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 76 ~eLLe~I---r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
++++..+ ....++|||.-.+-.....+.+|+.+||+..++-
T Consensus 345 ~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 345 LTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 4444433 2334799999888889999999999999988765
No 148
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=73.33 E-value=26 Score=36.91 Aligned_cols=101 Identities=14% Similarity=0.123 Sum_probs=65.9
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 006057 14 GLRVLAVD----DDPTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (663)
Q Consensus 14 glRVLIVD----DD~~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MPd------------mD 74 (663)
+..++.++ +.....+.++.+-+.. +..|. .+.+.++|..++.. ..|.|++-.. ++ ..
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~a---GaD~I~v~~g-~G~~~~~r~~~g~~~p 207 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELILS---GADIIKVGIG-PGSVCTTRKKTGVGYP 207 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTBCHHHHHCBCCC
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHHh---CCCEEEECCC-CCcCcCccccCCCCcc
Confidence 45667676 3344556666655555 55543 57888999887764 4898877532 21 12
Q ss_pred HHHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceE-EeCCC
Q 006057 75 GFKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDY-LLKPV 118 (663)
Q Consensus 75 G~eLLe~Ir---~~~dIPVIILSA~~d~e~v~kAl~aGA~DY-LlKPv 118 (663)
-+.++..+. ...++|||.-.+-.+...+.+|+.+||+.. +-+||
T Consensus 208 ~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 208 QLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred HHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 233443332 224699998888889999999999999875 55565
No 149
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=73.30 E-value=6.2 Score=36.60 Aligned_cols=52 Identities=23% Similarity=0.380 Sum_probs=31.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh--CCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRR--CQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~--~gy~V~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
|.||++||-|+.. .+...+.. .++.+..+.. ....+.+......+|+||+|.
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~l~~~yD~viiD~ 83 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRKDLADYDFAIVDG 83 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHHHTTTSSEEEEEC
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHHhcCCCCEEEEEC
Confidence 6799999988642 33344432 3466766554 333334444344699999997
No 150
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=73.25 E-value=31 Score=31.32 Aligned_cols=106 Identities=17% Similarity=0.096 Sum_probs=70.8
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEEE-EC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 14 GLRVLAVDDDP-TCLLLLETLLRRCQYHVTT-TS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 14 glRVLIVDDD~-~~r~iL~~lL~~~gy~V~t-as--dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
.++++|+.+.+ .....++.+++..+ .|.. .. +.++...++. ..|++|+-... +.-|..+++.+. ..+|
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~----~ad~~l~ps~~-e~~~~~~~Ea~a--~G~P 141 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG----SVDFVIIPSYF-EPFGLVALEAMC--LGAI 141 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT----TCSEEEECCSC-CSSCHHHHHHHH--TTCE
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH----HCCEEEECCCC-CCccHHHHHHHH--CCCC
Confidence 46788886543 35667777887776 4544 33 4445555554 46888874433 334666777653 4678
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
||+. . .....+.+ .|..+++..|-+.++|...+..++.
T Consensus 142 vI~~-~---~~~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 142 PIAS-A---VGGLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp EEEE-S---CHHHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred EEEe-C---CCChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7754 2 23444555 7889999999999999999999886
No 151
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=71.52 E-value=5.9 Score=40.52 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=51.1
Q ss_pred CceEEEEeCCC--CCCCH--------------------HHHHHHHhcc-CCCcEEEEecCC------ChHHHHHHHhcCC
Q 006057 60 KFDLVISDVHM--PDMDG--------------------FKLLELVGLE-MDLPVIMLSGNG------DPKLVMKGITHGA 110 (663)
Q Consensus 60 ~pDLVIlDv~M--PdmDG--------------------~eLLe~Ir~~-~dIPVIILSA~~------d~e~v~kAl~aGA 110 (663)
..|+|=+++-. |-+|| +++++.+|.. .++||++|+-.. -...+.++.++|+
T Consensus 45 GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGv 124 (267)
T 3vnd_A 45 GADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGV 124 (267)
T ss_dssp TCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTC
T ss_pred CCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCC
Confidence 57888887543 44554 5566666665 789999997432 2557889999999
Q ss_pred ceEEeCCCCHHHHHHHHHHH
Q 006057 111 CDYLLKPVRIEELKNIWQHV 130 (663)
Q Consensus 111 ~DYLlKPvs~eeL~~~~q~V 130 (663)
++.++-.+..++....++.+
T Consensus 125 dgvii~Dlp~ee~~~~~~~~ 144 (267)
T 3vnd_A 125 DSVLIADVPVEESAPFSKAA 144 (267)
T ss_dssp CEEEETTSCGGGCHHHHHHH
T ss_pred CEEEeCCCCHhhHHHHHHHH
Confidence 99999888888865554444
No 152
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=70.35 E-value=42 Score=34.71 Aligned_cols=117 Identities=11% Similarity=0.111 Sum_probs=80.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC-CCCCCCHHHHHHHHh-ccCCCcE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV-HMPDMDGFKLLELVG-LEMDLPV 90 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv-~MPdmDG~eLLe~Ir-~~~dIPV 90 (663)
..+.|.+.-.++.....+...|....|.+..+...++-++.++.+++.+|.+|+.. .. .-..+...+. ...-+|+
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~~~e~iDcLvle~~~~---~~~~~~~~L~~~g~lLP~ 84 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQTHRDQIDCLILVAANP---SFRAVVQQLCFEGVVVPA 84 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHHSTTSCSEEEEETTST---THHHHHHHHHHTTCCCCE
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHhccccCCEEEEEeCCC---ccHHHHHHHHHcCccccE
Confidence 46788888899999999999998888999999999999999998888999999876 32 3445555554 4456899
Q ss_pred EEEecCCChHHHH----HHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 91 IMLSGNGDPKLVM----KGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 91 IILSA~~d~e~v~----kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++..... ..-. +.+-+ ..+.-...-..++|...|..++.+.
T Consensus 85 vil~~~~~-~~~~~~~~~~~yh-~aEv~l~~~ql~~l~~~Id~AI~~F 130 (289)
T 1r8j_A 85 IVVGDRDS-EDPDEPAKEQLYH-SAELHLGIHQLEQLPYQVDAALAEF 130 (289)
T ss_dssp EEESCCC-------CCSSCSSB-TTCEEECTTCGGGHHHHHHHHHHHH
T ss_pred EEeccCcc-ccCCCCccceecc-HHHHcCCHhHHHHHHHHHHHHHHHH
Confidence 98865422 0000 11111 1222333445577777777777654
No 153
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=70.20 E-value=16 Score=36.95 Aligned_cols=108 Identities=13% Similarity=0.094 Sum_probs=65.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTT--SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~ta--sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.++++|+.+.+. ..++++++...-.|... -+..+..+++.. .|++|+--.-.+.-|..+++.+. ..+|||
T Consensus 240 ~~~l~i~G~~~~--~~l~~~~~~~~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~~~e~~~~~~~Ea~a--~G~PvI 311 (406)
T 2gek_A 240 DVEILIVGRGDE--DELREQAGDLAGHLRFLGQVDDATKASAMRS----ADVYCAPHLGGESFGIVLVEAMA--AGTAVV 311 (406)
T ss_dssp TCEEEEESCSCH--HHHHHHTGGGGGGEEECCSCCHHHHHHHHHH----SSEEEECCCSCCSSCHHHHHHHH--HTCEEE
T ss_pred CeEEEEEcCCcH--HHHHHHHHhccCcEEEEecCCHHHHHHHHHH----CCEEEecCCCCCCCchHHHHHHH--cCCCEE
Confidence 456666665554 44455444332223322 233444555543 47777642212334566666553 357877
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
+. +.....+.+..|..+|+.+|-+.++|..++..++..
T Consensus 312 ~~----~~~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~~ 349 (406)
T 2gek_A 312 AS----DLDAFRRVLADGDAGRLVPVDDADGMAAALIGILED 349 (406)
T ss_dssp EC----CCHHHHHHHTTTTSSEECCTTCHHHHHHHHHHHHHC
T ss_pred Ee----cCCcHHHHhcCCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 53 225566778888999999999999999999988753
No 154
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=70.19 E-value=37 Score=34.85 Aligned_cols=81 Identities=25% Similarity=0.253 Sum_probs=58.0
Q ss_pred HHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-------CCCHHHHHHHHhccCCCcEEEEecCCChHHHHH
Q 006057 33 LLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-------DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 33 lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MP-------dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~k 104 (663)
.++..+..|. .+.+.++|...... .+|.|+++-.-+ +...+++++.++...++|||+-.+-.+.+.+.+
T Consensus 113 ~l~~~gi~vi~~v~t~~~a~~~~~~---GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~~iPviaaGGI~~~~~v~~ 189 (328)
T 2gjl_A 113 EFRRHGVKVIHKCTAVRHALKAERL---GVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRLRVPIIASGGFADGRGLVA 189 (328)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTCCSCEEEESSCCSHHHHHH
T ss_pred HHHHcCCCEEeeCCCHHHHHHHHHc---CCCEEEEECCCCCcCCCCccccHHHHHHHHHHhcCCCEEEECCCCCHHHHHH
Confidence 3444465554 46778888776653 589888854222 125678888887767899998888878888999
Q ss_pred HHhcCCceEEeC
Q 006057 105 GITHGACDYLLK 116 (663)
Q Consensus 105 Al~aGA~DYLlK 116 (663)
++..||+...+-
T Consensus 190 al~~GAdgV~vG 201 (328)
T 2gjl_A 190 ALALGADAINMG 201 (328)
T ss_dssp HHHHTCSEEEES
T ss_pred HHHcCCCEEEEC
Confidence 999999987653
No 155
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=69.71 E-value=32 Score=37.79 Aligned_cols=99 Identities=18% Similarity=0.191 Sum_probs=64.9
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCC------------CC
Q 006057 14 GLRVLAVD----DDPTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHMPD------------MD 74 (663)
Q Consensus 14 glRVLIVD----DD~~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MPd------------mD 74 (663)
|..+++|| ..+...+.++.+-+.. +..|. .+.+.++|..++.. ..|.|.+-+. |+ ..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~vg~g-~Gs~~~t~~~~g~g~p 316 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEA---GADAVKVGIG-PGSICTTRIVAGVGVP 316 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHT---TCSEEEECSS-CSTTCHHHHHTCBCCC
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHc---CCCEEEECCC-CCcCCCccccCCCCcc
Confidence 44566666 3344556666666665 44443 46788888777764 4788887321 11 22
Q ss_pred HHHHHHHHhc---cCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 75 GFKLLELVGL---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 75 G~eLLe~Ir~---~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.++++..+.. ..++|||.-.+-...+.+.+++.+||+...+-
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 3455554432 34799999888888999999999999887654
No 156
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=69.57 E-value=32 Score=37.72 Aligned_cols=88 Identities=15% Similarity=0.189 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC--------------CCCCHHHHHHHHhccCC
Q 006057 25 TCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHM--------------PDMDGFKLLELVGLEMD 87 (663)
Q Consensus 25 ~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~M--------------PdmDG~eLLe~Ir~~~d 87 (663)
...+.++.+-+.+ +..|. .+.+.++|..+... ..|.|.+-.+- |....+.+++.++...+
T Consensus 282 ~~~~~i~~i~~~~~~~pvi~~~v~t~~~a~~l~~a---Gad~I~vg~~~G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ 358 (514)
T 1jcn_A 282 YQIAMVHYIKQKYPHLQVIGGNVVTAAQAKNLIDA---GVDGLRVGMGCGSICITQEVMACGRPQGTAVYKVAEYARRFG 358 (514)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSCCBTTBCCCSCCCCHHHHHHHHHHHHGGGT
T ss_pred hHHHHHHHHHHhCCCCceEecccchHHHHHHHHHc---CCCEEEECCCCCcccccccccCCCccchhHHHHHHHHHhhCC
Confidence 3445566666665 55554 46778888777654 47888774321 11223556666666668
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+|||...+-.....+.+++.+||+...+
T Consensus 359 ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 359 VPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp CCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 9999988888889999999999987543
No 157
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=68.97 E-value=30 Score=35.78 Aligned_cols=81 Identities=21% Similarity=0.226 Sum_probs=58.2
Q ss_pred HHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHH
Q 006057 33 LLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGI 106 (663)
Q Consensus 33 lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl 106 (663)
.++..+..|. .+.+.++|..+... .+|.|+++-.-. ....++++..++...++|||+-.+-.+.+.+.+++
T Consensus 119 ~l~~~g~~v~~~v~s~~~a~~a~~~---GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~al 195 (326)
T 3bo9_A 119 ELKENGTKVIPVVASDSLARMVERA---GADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAF 195 (326)
T ss_dssp HHHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHH
T ss_pred HHHHcCCcEEEEcCCHHHHHHHHHc---CCCEEEEECCCCCccCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHHH
Confidence 3444565554 46778888766543 488888864221 23567888877666689999888888889999999
Q ss_pred hcCCceEEeC
Q 006057 107 THGACDYLLK 116 (663)
Q Consensus 107 ~aGA~DYLlK 116 (663)
..||+...+-
T Consensus 196 ~~GA~gV~vG 205 (326)
T 3bo9_A 196 ALGAEAVQMG 205 (326)
T ss_dssp HHTCSEEEES
T ss_pred HhCCCEEEec
Confidence 9999987653
No 158
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=68.89 E-value=11 Score=33.20 Aligned_cols=39 Identities=28% Similarity=0.350 Sum_probs=26.6
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh
Q 006057 18 LAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRE 56 (663)
Q Consensus 18 LIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre 56 (663)
|+-|.|+..++..++.++..||+|..+.+.++|+..+++
T Consensus 81 llqdqdeneleefkrkiesqgyevrkvtddeealkivre 119 (134)
T 2lci_A 81 LLQDQDENELEEFKRKIESQGYEVRKVTDDEEALKIVRE 119 (134)
T ss_dssp EEECSCHHHHHHHHHHHHTTTCEEEEECCHHHHHHHHHH
T ss_pred EeecCchhHHHHHHHHHHhCCeeeeecCChHHHHHHHHH
Confidence 334556666666677777777777777777777776664
No 159
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=68.78 E-value=38 Score=35.45 Aligned_cols=76 Identities=20% Similarity=0.121 Sum_probs=54.9
Q ss_pred CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC-----CCC-----------CCHHHHHHHHhccCCCcEEEEecCCCh
Q 006057 37 CQYHVT-TTSQAITALKLLRENKNKFDLVISDVH-----MPD-----------MDGFKLLELVGLEMDLPVIMLSGNGDP 99 (663)
Q Consensus 37 ~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~-----MPd-----------mDG~eLLe~Ir~~~dIPVIILSA~~d~ 99 (663)
.+..|. .+.+.++|..+... .+|.|+++-. ... ...+++++.++...++|||+..+-.+.
T Consensus 144 ~g~~v~~~v~t~~~a~~a~~~---GaD~i~v~g~~~GGh~g~~~~~~~~~~~~~~~~~~l~~i~~~~~iPViaaGGI~~~ 220 (369)
T 3bw2_A 144 AGTLTLVTATTPEEARAVEAA---GADAVIAQGVEAGGHQGTHRDSSEDDGAGIGLLSLLAQVREAVDIPVVAAGGIMRG 220 (369)
T ss_dssp TTCEEEEEESSHHHHHHHHHT---TCSEEEEECTTCSEECCCSSCCGGGTTCCCCHHHHHHHHHHHCSSCEEEESSCCSH
T ss_pred CCCeEEEECCCHHHHHHHHHc---CCCEEEEeCCCcCCcCCCcccccccccccccHHHHHHHHHHhcCceEEEECCCCCH
Confidence 465544 56778887766543 5899998541 111 234888888876678999988887788
Q ss_pred HHHHHHHhcCCceEEe
Q 006057 100 KLVMKGITHGACDYLL 115 (663)
Q Consensus 100 e~v~kAl~aGA~DYLl 115 (663)
+.+.+++..||+.+.+
T Consensus 221 ~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 221 GQIAAVLAAGADAAQL 236 (369)
T ss_dssp HHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999988654
No 160
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=68.74 E-value=6.4 Score=39.76 Aligned_cols=76 Identities=22% Similarity=0.243 Sum_probs=51.7
Q ss_pred CCEEE--EECCHHHHHHHHHhcCCCceEEEE-eCCCC---CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCc
Q 006057 38 QYHVT--TTSQAITALKLLRENKNKFDLVIS-DVHMP---DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGAC 111 (663)
Q Consensus 38 gy~V~--tasdg~EALelLre~k~~pDLVIl-Dv~MP---dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~ 111 (663)
|..+. .+.+.+++.++... ..|.|+. -...+ +..+.+++++++...++|||+..+-...+.+.+++++||+
T Consensus 126 g~~vi~~~~~~~~~a~~~~~~---gad~v~~~~~~~Gt~~~~~~~~~l~~i~~~~~iPviv~gGI~t~eda~~~~~~GAd 202 (264)
T 1xm3_A 126 GFIVLPYTSDDVVLARKLEEL---GVHAIMPGASPIGSGQGILNPLNLSFIIEQAKVPVIVDAGIGSPKDAAYAMELGAD 202 (264)
T ss_dssp TCCEEEEECSCHHHHHHHHHH---TCSCBEECSSSTTCCCCCSCHHHHHHHHHHCSSCBEEESCCCSHHHHHHHHHTTCS
T ss_pred CeEEEEEcCCCHHHHHHHHHh---CCCEEEECCcccCCCCCCCCHHHHHHHHhcCCCCEEEEeCCCCHHHHHHHHHcCCC
Confidence 66555 44566666655543 3566532 00011 1234778888877778999999988888999999999999
Q ss_pred eEEeC
Q 006057 112 DYLLK 116 (663)
Q Consensus 112 DYLlK 116 (663)
.+++-
T Consensus 203 gViVG 207 (264)
T 1xm3_A 203 GVLLN 207 (264)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 98654
No 161
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=68.56 E-value=7 Score=30.78 Aligned_cols=46 Identities=20% Similarity=0.304 Sum_probs=36.9
Q ss_pred CceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhh
Q 006057 200 PRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 249 (663)
Q Consensus 200 ~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQk 249 (663)
.+-.||+|-..+++++|..+|..+= +.|.+.| ++-|..++..|-++
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~~~W--~~Ia~~~--~~Rt~~qcr~r~~~ 52 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGFGNW--QDVANQM--CTKTKEECEKHYMK 52 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCTTCH--HHHHHHH--TTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCcH--HHHHHHh--CCCCHHHHHHHHHH
Confidence 3557999999999999999996442 4566776 78999999997665
No 162
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=66.98 E-value=27 Score=37.18 Aligned_cols=88 Identities=15% Similarity=0.122 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC---------C--CCCHHHHHHHHh---ccCC
Q 006057 25 TCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHM---------P--DMDGFKLLELVG---LEMD 87 (663)
Q Consensus 25 ~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~M---------P--dmDG~eLLe~Ir---~~~d 87 (663)
...+.++.+-+.. +..|. .+.+.++|..+.. ..+|.|++-..- . +...++.+..+. ...+
T Consensus 180 ~~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~~---~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ 256 (404)
T 1eep_A 180 RIIELIKKIKTKYPNLDLIAGNIVTKEAALDLIS---VGADCLKVGIGPGSICTTRIVAGVGVPQITAICDVYEACNNTN 256 (404)
T ss_dssp HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHT---TTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHHh---cCCCEEEECCCCCcCcCccccCCCCcchHHHHHHHHHHHhhcC
Confidence 3455555554555 55555 4677777766553 258988882110 0 122345555443 2457
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+|||...+-.+...+.+++.+||+...+
T Consensus 257 ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 257 ICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp CEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred ceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 9999888888889999999999998765
No 163
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=66.93 E-value=9.9 Score=30.62 Aligned_cols=52 Identities=17% Similarity=0.192 Sum_probs=40.8
Q ss_pred CCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~ 255 (663)
..|..||+|--...+++|+..|..+= +.|.+.+...+-|-.++.. +||.+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W--~~Ia~~~~~~~Rt~~qcr~---Rw~nl~k 60 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNW--AAISKNYPFVNRTAVMIKD---RWRTMKR 60 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCH--HHHHHHSCCSSCCHHHHHH---HHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCch--HHHHhhcCCCCCCHHHHHH---HHHHHhc
Confidence 34567999999999999999996542 5688887777889888877 6666655
No 164
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=66.91 E-value=32 Score=30.45 Aligned_cols=93 Identities=10% Similarity=0.046 Sum_probs=47.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~dIPVI 91 (663)
|.+|.++|.++...+.++ ..|+.+....- -.+.++.+. -...|+||+-+.-+. .-..++..++ ..+.++||
T Consensus 30 g~~v~vid~~~~~~~~~~----~~g~~~i~gd~~~~~~l~~a~--i~~ad~vi~~~~~~~-~n~~~~~~a~~~~~~~~ii 102 (140)
T 3fwz_A 30 DIPLVVIETSRTRVDELR----ERGVRAVLGNAANEEIMQLAH--LECAKWLILTIPNGY-EAGEIVASARAKNPDIEII 102 (140)
T ss_dssp TCCEEEEESCHHHHHHHH----HTTCEEEESCTTSHHHHHHTT--GGGCSEEEECCSCHH-HHHHHHHHHHHHCSSSEEE
T ss_pred CCCEEEEECCHHHHHHHH----HcCCCEEECCCCCHHHHHhcC--cccCCEEEEECCChH-HHHHHHHHHHHHCCCCeEE
Confidence 556777777765544332 34665543221 122333221 125677776442211 1222333444 34677777
Q ss_pred EEecCCChHHHHHHHhcCCceEEe
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+... +.+......+.|++..+.
T Consensus 103 ar~~--~~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 103 ARAH--YDDEVAYITERGANQVVM 124 (140)
T ss_dssp EEES--SHHHHHHHHHTTCSEEEE
T ss_pred EEEC--CHHHHHHHHHCCCCEEEC
Confidence 6554 445666677889886664
No 165
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=65.25 E-value=50 Score=29.10 Aligned_cols=115 Identities=12% Similarity=0.185 Sum_probs=63.0
Q ss_pred EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH-HHHHHhc-cCCCcEEEEe
Q 006057 17 VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFK-LLELVGL-EMDLPVIMLS 94 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~e-LLe~Ir~-~~dIPVIILS 94 (663)
|++...|+..++..+.++.+.||.|.++.++.+.-+.+.+--.++..-|+=+...+..-.+ .++.++. ...+-||+.-
T Consensus 5 ivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiyd 84 (134)
T 2l69_A 5 IVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYD 84 (134)
T ss_dssp EEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred EEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 4455677888888999999999999999999988777665333444322222222221111 2233322 2233344332
Q ss_pred cCCC---hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 95 GNGD---PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 95 A~~d---~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
.+. .+..++....|..-- --.++++++..+.+++|..
T Consensus 85 -qdqnrleefsrevrrrgfevr--tvtspddfkkslerlirev 124 (134)
T 2l69_A 85 -QDQNRLEEFSREVRRRGFEVR--TVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp -SCHHHHHHHHHHHHHTTCCEE--EESSHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHhcCceEE--EecChHHHHHHHHHHHHHh
Confidence 221 112233334443211 1235688888888888753
No 166
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=64.91 E-value=37 Score=35.05 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=56.5
Q ss_pred HHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCC-----CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHh
Q 006057 34 LRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHM-----PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGIT 107 (663)
Q Consensus 34 L~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~M-----PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~ 107 (663)
++..+..|. .+.+.++|..+... .+|.|+++-.- .....+++++.++...++|||+..+-.+.+.+.+++.
T Consensus 106 l~~~g~~v~~~v~~~~~a~~~~~~---GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~~iPViaaGGI~~~~~~~~al~ 182 (332)
T 2z6i_A 106 FHEAGIIVIPVVPSVALAKRMEKI---GADAVIAEGMEAGGHIGKLTTMTLVRQVATAISIPVIAAGGIADGEGAAAGFM 182 (332)
T ss_dssp HHHTTCEEEEEESSHHHHHHHHHT---TCSCEEEECTTSSEECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHH
T ss_pred HHHcCCeEEEEeCCHHHHHHHHHc---CCCEEEEECCCCCCCCCCccHHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHH
Confidence 344566655 46777777655543 58988886321 1235678888887667899999888888899999999
Q ss_pred cCCceEEe
Q 006057 108 HGACDYLL 115 (663)
Q Consensus 108 aGA~DYLl 115 (663)
.||+...+
T Consensus 183 ~GAdgV~v 190 (332)
T 2z6i_A 183 LGAEAVQV 190 (332)
T ss_dssp TTCSEEEE
T ss_pred cCCCEEEe
Confidence 99988654
No 167
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=64.58 E-value=18 Score=36.45 Aligned_cols=107 Identities=15% Similarity=0.250 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhCCCEEEE-----ECCHHHHHHHHHhcCCCceEEEE---------eCCCC---------CCCH------
Q 006057 25 TCLLLLETLLRRCQYHVTT-----TSQAITALKLLRENKNKFDLVIS---------DVHMP---------DMDG------ 75 (663)
Q Consensus 25 ~~r~iL~~lL~~~gy~V~t-----asdg~EALelLre~k~~pDLVIl---------Dv~MP---------dmDG------ 75 (663)
...+.++.+-+..+..|.. +.+..+..+.+.+. ..|.|++ +.... +..|
T Consensus 151 ~~~eii~~v~~~~~~pv~vk~~~~~~~~~~~a~~l~~~--G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~ 228 (311)
T 1ep3_A 151 VAAALVKACKAVSKVPLYVKLSPNVTDIVPIAKAVEAA--GADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPV 228 (311)
T ss_dssp HHHHHHHHHHHHCSSCEEEEECSCSSCSHHHHHHHHHT--TCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECCChHHHHHHHHHHHHc--CCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHH
Confidence 3455555555555654442 23445545555543 5888877 33211 0111
Q ss_pred -HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE------eCCCCHHHHHHHHHHHHHh
Q 006057 76 -FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL------LKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 76 -~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL------lKPvs~eeL~~~~q~Vlrr 133 (663)
+++++.++...++|||...+-.+.+.+.++++.||+... ..|.-..+++..++.++..
T Consensus 229 ~~~~i~~i~~~~~ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~~~~ 293 (311)
T 1ep3_A 229 ALKLIHQVAQDVDIPIIGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPELMDQ 293 (311)
T ss_dssp HHHHHHHHHTTCSSCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHHHHH
Confidence 467777776678999988887888999999999988753 3566566666666655543
No 168
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=63.80 E-value=31 Score=33.00 Aligned_cols=87 Identities=16% Similarity=0.167 Sum_probs=57.3
Q ss_pred HHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEeCC-----CCC----CCHHHHHHHHhccCCCcEEEEec
Q 006057 27 LLLLETLLRRC-QYHV-TTTSQAITALKLLRENKNKFDLVISDVH-----MPD----MDGFKLLELVGLEMDLPVIMLSG 95 (663)
Q Consensus 27 r~iL~~lL~~~-gy~V-~tasdg~EALelLre~k~~pDLVIlDv~-----MPd----mDG~eLLe~Ir~~~dIPVIILSA 95 (663)
.+.++.+-+.+ +..+ ..+.+.+++.++... ..|+|.+-.. ..+ ..++++++.++...++|||+..+
T Consensus 107 ~~~i~~~~~~~~~~~v~~~~~t~~e~~~~~~~---G~d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~ipvia~GG 183 (223)
T 1y0e_A 107 DELVSYIRTHAPNVEIMADIATVEEAKNAARL---GFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVIAEGN 183 (223)
T ss_dssp HHHHHHHHHHCTTSEEEEECSSHHHHHHHHHT---TCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCCSEEEEESS
T ss_pred HHHHHHHHHhCCCceEEecCCCHHHHHHHHHc---CCCEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCCCCEEEecC
Confidence 34444444443 5554 356677887775543 4788765321 011 12456777776656899999888
Q ss_pred CCChHHHHHHHhcCCceEEeC
Q 006057 96 NGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 96 ~~d~e~v~kAl~aGA~DYLlK 116 (663)
-.+.+.+.+++++||+.++.-
T Consensus 184 I~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 184 VITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCHHHHHHHHHcCCCEEEEC
Confidence 878999999999999988764
No 169
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=62.97 E-value=25 Score=33.54 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=46.4
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCC--------CCCHHHHHHHHhccCC-CcEEEEecCCChHHHHHHHhcCCceE
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMP--------DMDGFKLLELVGLEMD-LPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MP--------dmDG~eLLe~Ir~~~d-IPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
.+.+..++...... .+|.|++....| ..-|++.++.++.... +||++..+-. .+.+.+++++||+.+
T Consensus 122 s~~t~~e~~~a~~~---g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~~~pvia~GGI~-~~nv~~~~~~Ga~gv 197 (227)
T 2tps_A 122 SAHTMSEVKQAEED---GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGIT-IDNAAPVIQAGADGV 197 (227)
T ss_dssp EECSHHHHHHHHHH---TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTCCCCEEEESSCC-TTTSHHHHHTTCSEE
T ss_pred ecCCHHHHHHHHhC---CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCCCCCEEEEcCCC-HHHHHHHHHcCCCEE
Confidence 35677776655543 489998632222 1236788887765555 9998877666 667778888999987
Q ss_pred Ee
Q 006057 114 LL 115 (663)
Q Consensus 114 Ll 115 (663)
.+
T Consensus 198 ~v 199 (227)
T 2tps_A 198 SM 199 (227)
T ss_dssp EE
T ss_pred EE
Confidence 53
No 170
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=62.68 E-value=6.5 Score=40.29 Aligned_cols=55 Identities=16% Similarity=0.203 Sum_probs=41.1
Q ss_pred HHHHHHHhcc-CCCcEEEEec------CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 006057 76 FKLLELVGLE-MDLPVIMLSG------NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (663)
Q Consensus 76 ~eLLe~Ir~~-~dIPVIILSA------~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~V 130 (663)
|++++.+|.. .++|||+|+= +.....+.+|.++|+++.|+-.+.++|.......+
T Consensus 85 ~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~ 146 (271)
T 3nav_A 85 FELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAA 146 (271)
T ss_dssp HHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHH
Confidence 5666777765 7899999972 34456789999999999999888888855544433
No 171
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=62.11 E-value=18 Score=29.05 Aligned_cols=55 Identities=20% Similarity=0.264 Sum_probs=43.3
Q ss_pred CCCCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhhhhh
Q 006057 197 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLKR 256 (663)
Q Consensus 197 ~kk~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~r 256 (663)
.++.|-.||+|--...+++|..+|..+= ..|.+.|...+-|-.++.. .|+.||+.
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~~~W--~~Ia~~~~~~~Rt~~qcr~---Rw~~~l~p 60 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGEGNW--SKILLHYKFNNRTSVMLKD---RWRTMKKL 60 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCSSCH--HHHHHHSCCSSCCHHHHHH---HHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCcH--HHHHHHcCcCCCCHHHHHH---HHHHHcCC
Confidence 4567788999999999999999996442 5688888544888888887 56667764
No 172
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=61.90 E-value=4.7 Score=41.61 Aligned_cols=93 Identities=22% Similarity=0.302 Sum_probs=61.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC-CcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD-LPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~d-IPVII 92 (663)
.|+|.||-....-.+.+.+.|+..|++|.......+.+ ..+|+||+ -+.||. +++..+...+ +|||-
T Consensus 29 ~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~-------~~~DlvIv----lGGDGT-~L~aa~~~~~~~PilG 96 (278)
T 1z0s_A 29 GMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEEL-------ENFDFIVS----VGGDGT-ILRILQKLKRCPPIFG 96 (278)
T ss_dssp -CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGGG-------GGSSEEEE----EECHHH-HHHHHTTCSSCCCEEE
T ss_pred ceEEEEEeCCcHHHHHHHHHHHHCCCEEEEcccccccc-------CCCCEEEE----ECCCHH-HHHHHHHhCCCCcEEE
Confidence 37888885321116778888999999988765432221 14788887 467884 4444443222 89998
Q ss_pred EecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
+.. |-.+||. ++.++++..++..+++
T Consensus 97 IN~-------------G~lGFLt-~~~~~~~~~~l~~l~~ 122 (278)
T 1z0s_A 97 INT-------------GRVGLLT-HASPENFEVELKKAVE 122 (278)
T ss_dssp EEC-------------SSSCTTC-CBBTTBCHHHHHHHHH
T ss_pred ECC-------------CCCcccc-ccCHHHHHHHHHHHHh
Confidence 763 5667777 5777888888888886
No 173
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=61.30 E-value=52 Score=36.23 Aligned_cols=100 Identities=18% Similarity=0.168 Sum_probs=64.7
Q ss_pred CcEEEEEe----CCHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCCH
Q 006057 14 GLRVLAVD----DDPTCLLLLETLLRRC-QYHV--TTTSQAITALKLLRENKNKFDLVISDVHMP-----------DMDG 75 (663)
Q Consensus 14 glRVLIVD----DD~~~r~iL~~lL~~~-gy~V--~tasdg~EALelLre~k~~pDLVIlDv~MP-----------dmDG 75 (663)
|..+++|| +.....+.++++-+.. +..| ..+.+.++|..++.. ..|.|++.+.-. +...
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~a---GaD~I~Vg~g~Gs~~~tr~~~g~g~p~ 319 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEA---GVSAVKVGIGPGSICTTRIVTGVGVPQ 319 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHH---TCSEEEECSSCCTTBCHHHHHCCCCCH
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHh---CCCEEEECCCCCcCcccccccCCCccH
Confidence 45566776 3345556666666665 3333 346788888777764 479888753211 1123
Q ss_pred HHHHHHHhc---cCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 76 FKLLELVGL---EMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 76 ~eLLe~Ir~---~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
++++..+.. ...+|||.-.+-...+.+.+|+.+||+..++-
T Consensus 320 ~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 320 ITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 444443322 34699998888888999999999999987765
No 174
>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*
Probab=61.28 E-value=1.3e+02 Score=31.01 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=62.9
Q ss_pred CCHHHHHHHHHHHHhCC-CEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--C------------HHHHHHHHhc
Q 006057 22 DDPTCLLLLETLLRRCQ-YHVT--TTSQAITALKLLRENKNKFDLVISDVHMPDM--D------------GFKLLELVGL 84 (663)
Q Consensus 22 DD~~~r~iL~~lL~~~g-y~V~--tasdg~EALelLre~k~~pDLVIlDv~MPdm--D------------G~eLLe~Ir~ 84 (663)
+.....+.++.+-+... ..|. .+.+.++|..++.. ..|.|++-.+ ++. + .++++..++.
T Consensus 132 ~~~~~~~~i~~lr~~~~~~~vi~G~v~s~e~A~~a~~a---Gad~Ivvs~h-gG~~~~~~~~~~~g~~g~~~~~l~~v~~ 207 (336)
T 1ypf_A 132 HSNAVINMIQHIKKHLPESFVIAGNVGTPEAVRELENA---GADATKVGIG-PGKVCITKIKTGFGTGGWQLAALRWCAK 207 (336)
T ss_dssp CSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSS-CSTTCHHHHHHSCSSTTCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHc---CCCEEEEecC-CCceeecccccCcCCchhHHHHHHHHHH
Confidence 44556677777766653 4443 25678888877765 4788888433 211 1 3566666666
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
..++|||.-.+-.....+.+++.+||+...+
T Consensus 208 ~~~ipVIa~GGI~~g~Dv~kalalGAdaV~i 238 (336)
T 1ypf_A 208 AASKPIIADGGIRTNGDVAKSIRFGATMVMI 238 (336)
T ss_dssp TCSSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred HcCCcEEEeCCCCCHHHHHHHHHcCCCEEEe
Confidence 5689999988888899999999999988644
No 175
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=61.09 E-value=27 Score=28.99 Aligned_cols=45 Identities=13% Similarity=0.210 Sum_probs=36.2
Q ss_pred ceeeehhhhHHHHHHHHHhcCCCcchH---HHHhhcCCCCCCHHHHHHhhhh
Q 006057 201 RVVWSVELHRKFVAAVNQLGIDKAVPK---KILDLMNVEKLTRENVASHLQK 249 (663)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dkA~pk---~Ile~m~v~~LT~~~VaSHLQk 249 (663)
+-.||.|-...|+.|+..+|.+ .|. +|-++| +|-|..+|..|.++
T Consensus 18 ~~~WT~eEd~~L~~al~~~g~~--~~~rW~~IA~~v--pGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 18 EEPWTQNQQKLLELALQQYPRG--SSDCWDKIARCV--PSKSKEDCIARYKL 65 (73)
T ss_dssp SCCCCHHHHHHHHHHHHHSCSS--SHHHHHHHGGGC--SSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHc--CCCCHHHHHHHHHH
Confidence 4569999999999999999853 444 566666 79999999997654
No 176
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=59.97 E-value=1e+02 Score=29.49 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=40.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVIS 66 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIl 66 (663)
..+|+++-..+..+..++.++...+.++. ...+.++++...++....+|+||.
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~~~~~dVIIS 57 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGLQDEVDAIIS 57 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHHTTTCSEEEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHhcCCCeEEEE
Confidence 46899999999999998988887666665 456788888877653246898885
No 177
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=59.93 E-value=45 Score=32.44 Aligned_cols=84 Identities=14% Similarity=0.100 Sum_probs=51.0
Q ss_pred HHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCce-EEEEeCCCCCCC---------HHHHHHHHhccCCCcEEEEec
Q 006057 29 LLETLLRRCQYHVTTT---SQAITALKLLRENKNKFD-LVISDVHMPDMD---------GFKLLELVGLEMDLPVIMLSG 95 (663)
Q Consensus 29 iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pD-LVIlDv~MPdmD---------G~eLLe~Ir~~~dIPVIILSA 95 (663)
.+.+.+++.|..+... .+..++++.+... .| +|.+ +..++.. .++.++.++...++||++-.+
T Consensus 124 ~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~---~d~~i~~-~~~~G~~g~~~~~~~~~~~~i~~l~~~~~~pi~~~GG 199 (248)
T 1geq_A 124 EFTEIAREEGIKTVFLAAPNTPDERLKVIDDM---TTGFVYL-VSLYGTTGAREEIPKTAYDLLRRAKRICRNKVAVGFG 199 (248)
T ss_dssp HHHHHHHHHTCEEEEEECTTCCHHHHHHHHHH---CSSEEEE-ECCC-------CCCHHHHHHHHHHHHHCSSCEEEESC
T ss_pred HHHHHHHHhCCCeEEEECCCCHHHHHHHHHhc---CCCeEEE-EECCccCCCCCCCChhHHHHHHHHHhhcCCCEEEEee
Confidence 3444455556554422 2445666655543 33 5433 2224432 345677776656799988777
Q ss_pred CCChHHHHHHHhcCCceEEeC
Q 006057 96 NGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 96 ~~d~e~v~kAl~aGA~DYLlK 116 (663)
-...+.+.+++.+||+.+++-
T Consensus 200 I~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 200 VSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp CCSHHHHHHHHHTTCSEEEEC
T ss_pred cCCHHHHHHHHHcCCCEEEEc
Confidence 777788999999999998865
No 178
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=59.56 E-value=15 Score=29.07 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=34.9
Q ss_pred CCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHL 247 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHL 247 (663)
+....||+|-|..|++++...| |.. .+|..++ ++-|..+|..|-
T Consensus 10 ~~~~~WT~eE~~~F~~~~~~~g--k~w-~~Ia~~l--~~rt~~~~v~~Y 53 (61)
T 2eqr_A 10 QFMNVWTDHEKEIFKDKFIQHP--KNF-GLIASYL--ERKSVPDCVLYY 53 (61)
T ss_dssp SCCCSCCHHHHHHHHHHHHHST--TCH-HHHHHHC--TTSCHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHHHhC--CCH-HHHHHHc--CCCCHHHHHHHH
Confidence 4557899999999999999998 333 5677775 788988887643
No 179
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=59.53 E-value=59 Score=29.35 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=65.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHH--hC----CCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLR--RC----QYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD 87 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~--~~----gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~d 87 (663)
.++++|+.+.+.. ..+++++. .. .....-.-+.++...+++. .|++|+-.. .+.-|+.+++.+. ..
T Consensus 50 ~~~l~i~G~~~~~-~~l~~~~~~~~~~l~~~v~~~g~~~~~e~~~~~~~----adi~v~ps~-~e~~~~~~~Eama--~G 121 (177)
T 2f9f_A 50 DEKLYIVGWFSKG-DHAERYARKIMKIAPDNVKFLGSVSEEELIDLYSR----CKGLLCTAK-DEDFGLTPIEAMA--SG 121 (177)
T ss_dssp TSCEEEEBCCCTT-STHHHHHHHHHHHSCTTEEEEESCCHHHHHHHHHH----CSEEEECCS-SCCSCHHHHHHHH--TT
T ss_pred CcEEEEEecCccH-HHHHHHHHhhhcccCCcEEEeCCCCHHHHHHHHHh----CCEEEeCCC-cCCCChHHHHHHH--cC
Confidence 4567777644321 23333333 21 2223333345556666653 578886332 3334666766653 46
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+|||+.. .....+.+..|..+++. +-+.++|..++..++...
T Consensus 122 ~PvI~~~----~~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~~ 163 (177)
T 2f9f_A 122 KPVIAVN----EGGFKETVINEKTGYLV-NADVNEIIDAMKKVSKNP 163 (177)
T ss_dssp CCEEEES----SHHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHCT
T ss_pred CcEEEeC----CCCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhCH
Confidence 8888642 24556667778899999 999999999999988644
No 180
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=58.51 E-value=9 Score=39.08 Aligned_cols=84 Identities=17% Similarity=0.141 Sum_probs=54.2
Q ss_pred CHHHHHHHHHh-cCCCceEEEEeCCCCC--CC--------------------HHHHHHHHhccCCCcEEEEecC------
Q 006057 46 QAITALKLLRE-NKNKFDLVISDVHMPD--MD--------------------GFKLLELVGLEMDLPVIMLSGN------ 96 (663)
Q Consensus 46 dg~EALelLre-~k~~pDLVIlDv~MPd--mD--------------------G~eLLe~Ir~~~dIPVIILSA~------ 96 (663)
+.+..++.++. ... .|+|.+++-..+ .| .+++++.+|...++|||+|+-.
T Consensus 28 ~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~~ 106 (271)
T 1ujp_A 28 SREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLAW 106 (271)
T ss_dssp CHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHHH
T ss_pred ChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHHh
Confidence 33444444432 123 899888764422 22 2566777776688999998421
Q ss_pred CChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 006057 97 GDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (663)
Q Consensus 97 ~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~V 130 (663)
.....+..|.++|++++|.-.+..+++...+..+
T Consensus 107 g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~ 140 (271)
T 1ujp_A 107 GPERFFGLFKQAGATGVILPDLPPDEDPGLVRLA 140 (271)
T ss_dssp CHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHH
T ss_pred hHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHH
Confidence 2245677899999999999888887766655444
No 181
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=57.71 E-value=22 Score=33.82 Aligned_cols=93 Identities=17% Similarity=0.162 Sum_probs=59.3
Q ss_pred HHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCC-CCCHHHHHHHHhccC--CCcEEEEecCCChHHHHHHHh
Q 006057 32 TLLRRCQYHV-TTTSQAITALKLLRENKNKFDLVISDVHMP-DMDGFKLLELVGLEM--DLPVIMLSGNGDPKLVMKGIT 107 (663)
Q Consensus 32 ~lL~~~gy~V-~tasdg~EALelLre~k~~pDLVIlDv~MP-dmDG~eLLe~Ir~~~--dIPVIILSA~~d~e~v~kAl~ 107 (663)
+..+..|..+ ..+.+..++...... .+|+|++ .| +..|++.++.++... ++|||+..+-. .+.+.++++
T Consensus 95 ~~~~~~g~~~~~g~~t~~e~~~a~~~---G~d~v~v---~~t~~~g~~~~~~l~~~~~~~ipvia~GGI~-~~~i~~~~~ 167 (212)
T 2v82_A 95 RRAVGYGMTVCPGCATATEAFTALEA---GAQALKI---FPSSAFGPQYIKALKAVLPSDIAVFAVGGVT-PENLAQWID 167 (212)
T ss_dssp HHHHHTTCEEECEECSHHHHHHHHHT---TCSEEEE---TTHHHHCHHHHHHHHTTSCTTCEEEEESSCC-TTTHHHHHH
T ss_pred HHHHHcCCCEEeecCCHHHHHHHHHC---CCCEEEE---ecCCCCCHHHHHHHHHhccCCCeEEEeCCCC-HHHHHHHHH
Confidence 3444556543 246788888766543 5898886 22 123567777776544 48999887766 677888999
Q ss_pred cCCceEEeCC-C-CH----HHHHHHHHHHH
Q 006057 108 HGACDYLLKP-V-RI----EELKNIWQHVV 131 (663)
Q Consensus 108 aGA~DYLlKP-v-s~----eeL~~~~q~Vl 131 (663)
+||+.+..-- + .. ++....++.+.
T Consensus 168 ~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~ 197 (212)
T 2v82_A 168 AGCAGAGLGSDLYRAGQSVERTAQQAAAFV 197 (212)
T ss_dssp HTCSEEEECTTTCCTTCCHHHHHHHHHHHH
T ss_pred cCCCEEEEChHHhCCCCCHHHHHHHHHHHH
Confidence 9999987442 2 21 45555555543
No 182
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=57.61 E-value=49 Score=34.66 Aligned_cols=108 Identities=15% Similarity=0.109 Sum_probs=69.3
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 14 GLRVLAVDDDP-TCLLLLETLLRRCQYHVT-TTS-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~-~~r~iL~~lL~~~gy~V~-tas-dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
.++++||.+.+ ..+..++++....+-.|. ... ..++...++.. .|++++--. -+.-|+.+++.+. ..+||
T Consensus 320 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~lEAma--~G~Pv 392 (485)
T 1rzu_A 320 GGRLVVLGAGDVALEGALLAAASRHHGRVGVAIGYNEPLSHLMQAG----CDAIIIPSR-FEPCGLTQLYALR--YGCIP 392 (485)
T ss_dssp TCEEEEEECBCHHHHHHHHHHHHHTTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CceEEEEeCCchHHHHHHHHHHHhCCCcEEEecCCCHHHHHHHHhc----CCEEEECcc-cCCCCHHHHHHHH--CCCCE
Confidence 56777776654 356677777776553343 333 33333455543 577776443 2344556666553 45788
Q ss_pred EEEecCCChHHHHHHHhcC---------CceEEeCCCCHHHHHHHHHHHHH
Q 006057 91 IMLSGNGDPKLVMKGITHG---------ACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aG---------A~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|+. . .....+.+..| ..+++..|-+.++|..++..++.
T Consensus 393 I~s-~---~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 439 (485)
T 1rzu_A 393 VVA-R---TGGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIRRTVR 439 (485)
T ss_dssp EEE-S---SHHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHHHHHH
T ss_pred EEe-C---CCChhheecccccccccccCCcceEeCCCCHHHHHHHHHHHHH
Confidence 863 2 24556667777 89999999999999999999883
No 183
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=57.55 E-value=42 Score=34.43 Aligned_cols=109 Identities=13% Similarity=0.127 Sum_probs=65.2
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC
Q 006057 14 GLRVLAVDDD---PTCLLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM 86 (663)
Q Consensus 14 glRVLIVDDD---~~~r~iL~~lL~~~gy--~V~tas--dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~ 86 (663)
.++++|+.+. ......++++++..+. .|.... +.++..+++.. .|++|+-.. .+.-|..+++.+. .
T Consensus 276 ~~~l~i~G~~~~~g~~~~~l~~~~~~~~l~~~v~~~g~~~~~~~~~~~~~----adv~v~ps~-~e~~~~~~~Eama--~ 348 (438)
T 3c48_A 276 NLRVIICGGPSGPNATPDTYRHMAEELGVEKRIRFLDPRPPSELVAVYRA----ADIVAVPSF-NESFGLVAMEAQA--S 348 (438)
T ss_dssp SEEEEEECCBC------CHHHHHHHHTTCTTTEEEECCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--T
T ss_pred ceEEEEEeCCCCCCcHHHHHHHHHHHcCCCCcEEEcCCCChHHHHHHHHh----CCEEEECcc-ccCCchHHHHHHH--c
Confidence 4566666651 1234555666665442 244333 33555556653 477776432 2334566666553 4
Q ss_pred CCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 87 DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 87 dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.+|||+. ... ...+.+..|..+++..|-+.++|..++..++..
T Consensus 349 G~PvI~~-~~~---~~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~~ 391 (438)
T 3c48_A 349 GTPVIAA-RVG---GLPIAVAEGETGLLVDGHSPHAWADALATLLDD 391 (438)
T ss_dssp TCCEEEE-SCT---THHHHSCBTTTEEEESSCCHHHHHHHHHHHHHC
T ss_pred CCCEEec-CCC---ChhHHhhCCCcEEECCCCCHHHHHHHHHHHHcC
Confidence 6898764 322 344556678889999999999999999988753
No 184
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=57.25 E-value=13 Score=29.09 Aligned_cols=46 Identities=22% Similarity=0.336 Sum_probs=36.4
Q ss_pred ceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCC-CCCHHHHHHhhhhh
Q 006057 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVE-KLTRENVASHLQKY 250 (663)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~-~LT~~~VaSHLQky 250 (663)
+-.||+|-..+++++|+..|..+= +.|.+.| + +-|..++..|-++|
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W--~~IA~~~--~~~Rt~~qcr~r~~~~ 55 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNW--ADIADYV--GNARTKEECRDHYLKT 55 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCH--HHHHHHH--CSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH--HHHHHHH--CCCCCHHHHHHHHHHH
Confidence 345999999999999999996542 4566666 6 78999999887665
No 185
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*
Probab=57.21 E-value=53 Score=30.74 Aligned_cols=71 Identities=20% Similarity=0.332 Sum_probs=49.2
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcC-CCceEEEEeCCCCCCCHHHHHHHH
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLRENK-NKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy--~V-~tasdg~EALelLre~k-~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
.+|.+.+|..||-++......++.+...+. .| ....++.+.+..+.... ..||+|++|...+ .-..+++.+
T Consensus 79 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~~~--~~~~~l~~~ 153 (223)
T 3duw_A 79 GLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDADKQ--NNPAYFEWA 153 (223)
T ss_dssp TCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSCGG--GHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCCcH--HHHHHHHHH
Confidence 456567999999999999999999887765 23 45678877776555422 3699999987532 223445444
No 186
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=57.17 E-value=57 Score=31.08 Aligned_cols=80 Identities=19% Similarity=0.227 Sum_probs=51.2
Q ss_pred CHHHHHHHHHhcCCCceEEEE-eCCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe------
Q 006057 46 QAITALKLLRENKNKFDLVIS-DVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL------ 115 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIl-Dv~MPdm---DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl------ 115 (663)
+..+.++.+.+. .+|.|++ .+...+. -.+++++.++...++|||+-.+-...+.+.+++++||+.++.
T Consensus 155 ~~~e~~~~~~~~--G~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~ 232 (253)
T 1h5y_A 155 DAVKWAKEVEEL--GAGEILLTSIDRDGTGLGYDVELIRRVADSVRIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF 232 (253)
T ss_dssp EHHHHHHHHHHH--TCSEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred CHHHHHHHHHhC--CCCEEEEecccCCCCcCcCCHHHHHHHHHhcCCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence 344544444443 4676654 5442111 146777777666689999888877778889999999998764
Q ss_pred CCCCHHHHHHHH
Q 006057 116 KPVRIEELKNIW 127 (663)
Q Consensus 116 KPvs~eeL~~~~ 127 (663)
.+...++++..+
T Consensus 233 ~~~~~~~~~~~l 244 (253)
T 1h5y_A 233 RVLSIAQVKRYL 244 (253)
T ss_dssp TSSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 355666555544
No 187
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=56.93 E-value=41 Score=35.22 Aligned_cols=108 Identities=6% Similarity=0.004 Sum_probs=64.3
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 14 GLRVLAVDDDP-TCLLLLETLLRRCQYHVT-TTS-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~-~~r~iL~~lL~~~gy~V~-tas-dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
.++++||.+.+ ..+..++++....+-.|. ... ..++...++.. .|++++--. .+.-|+.+++.+. ..+||
T Consensus 321 ~~~l~ivG~g~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~~~~~~~----adv~v~pS~-~E~~g~~~lEAma--~G~Pv 393 (485)
T 2qzs_A 321 GGQLALLGAGDPVLQEGFLAAAAEYPGQVGVQIGYHEAFSHRIMGG----ADVILVPSR-FEPCGLTQLYGLK--YGTLP 393 (485)
T ss_dssp TCEEEEEEEECHHHHHHHHHHHHHSTTTEEEEESCCHHHHHHHHHH----CSEEEECCS-CCSSCSHHHHHHH--HTCEE
T ss_pred CcEEEEEeCCchHHHHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHh----CCEEEECCc-cCCCcHHHHHHHH--CCCCE
Confidence 45666665443 345566666665543332 222 22222344442 466666432 2334555665543 35788
Q ss_pred EEEecCCChHHHHHHHhcC---------CceEEeCCCCHHHHHHHHHHHHH
Q 006057 91 IMLSGNGDPKLVMKGITHG---------ACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aG---------A~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
|+.. .....+.+..| ..+|+..|-+.++|..++..++.
T Consensus 394 I~s~----~gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~~ll~ 440 (485)
T 2qzs_A 394 LVRR----TGGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIRRAFV 440 (485)
T ss_dssp EEES----SHHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHHHHHH
T ss_pred EECC----CCCccceeccCccccccccccceEEECCCCHHHHHHHHHHHHH
Confidence 7642 24556667777 89999999999999999999883
No 188
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=56.71 E-value=14 Score=36.74 Aligned_cols=70 Identities=20% Similarity=0.296 Sum_probs=46.4
Q ss_pred CceEEEEeCCCC--CCC--------------------HHHHHHHHhccCCCcEEEEecCCChH---HHHHHHhcCCceEE
Q 006057 60 KFDLVISDVHMP--DMD--------------------GFKLLELVGLEMDLPVIMLSGNGDPK---LVMKGITHGACDYL 114 (663)
Q Consensus 60 ~pDLVIlDv~MP--dmD--------------------G~eLLe~Ir~~~dIPVIILSA~~d~e---~v~kAl~aGA~DYL 114 (663)
..|+|-+++-.. -+| ++++++.++...++||+++.-. +.. .+.++.++||++++
T Consensus 45 Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~ 123 (262)
T 1rd5_A 45 GADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYY-KPIMFRSLAKMKEAGVHGLI 123 (262)
T ss_dssp TCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCS-HHHHSCCTHHHHHTTCCEEE
T ss_pred CCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecC-cHHHHHHHHHHHHcCCCEEE
Confidence 588888887443 233 4566777777778999988521 211 13348899999999
Q ss_pred eCCCCHHHHHHHHHHH
Q 006057 115 LKPVRIEELKNIWQHV 130 (663)
Q Consensus 115 lKPvs~eeL~~~~q~V 130 (663)
.-....+++...+..+
T Consensus 124 v~d~~~~~~~~~~~~~ 139 (262)
T 1rd5_A 124 VPDLPYVAAHSLWSEA 139 (262)
T ss_dssp CTTCBTTTHHHHHHHH
T ss_pred EcCCChhhHHHHHHHH
Confidence 8777666665555443
No 189
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=55.92 E-value=25 Score=35.24 Aligned_cols=74 Identities=15% Similarity=0.219 Sum_probs=49.3
Q ss_pred HHHHHHHHhcCCCceEEEEeCCC------CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHH
Q 006057 48 ITALKLLRENKNKFDLVISDVHM------PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIE 121 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~M------PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~e 121 (663)
++..+++.. .|++|+-... ++.-|..+++.+. ..+|||+ +... ...+.+..| .+++..|-+.+
T Consensus 264 ~~~~~~~~~----ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a--~G~PvI~-~~~~---~~~e~i~~~-~g~~~~~~d~~ 332 (394)
T 3okp_A 264 QDMINTLAA----ADIFAMPARTRGGGLDVEGLGIVYLEAQA--CGVPVIA-GTSG---GAPETVTPA-TGLVVEGSDVD 332 (394)
T ss_dssp HHHHHHHHH----CSEEEECCCCBGGGTBCCSSCHHHHHHHH--TTCCEEE-CSST---TGGGGCCTT-TEEECCTTCHH
T ss_pred HHHHHHHHh----CCEEEecCccccccccccccCcHHHHHHH--cCCCEEE-eCCC---ChHHHHhcC-CceEeCCCCHH
Confidence 555555543 4777764433 1444666777653 4589886 3322 233455677 99999999999
Q ss_pred HHHHHHHHHHH
Q 006057 122 ELKNIWQHVVR 132 (663)
Q Consensus 122 eL~~~~q~Vlr 132 (663)
+|..++..++.
T Consensus 333 ~l~~~i~~l~~ 343 (394)
T 3okp_A 333 KLSELLIELLD 343 (394)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998875
No 190
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=55.91 E-value=86 Score=30.34 Aligned_cols=79 Identities=15% Similarity=0.214 Sum_probs=52.7
Q ss_pred HHHHHHHHHhcCCCceE-EEEeCCCCC-CC--HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC------
Q 006057 47 AITALKLLRENKNKFDL-VISDVHMPD-MD--GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK------ 116 (663)
Q Consensus 47 g~EALelLre~k~~pDL-VIlDv~MPd-mD--G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK------ 116 (663)
..+.++.+.+. .++. ++.++.-.+ .. .+++++.++...++|||+..+-...+.+.++++.||+.++.=
T Consensus 153 ~~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~ 230 (253)
T 1thf_D 153 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR 230 (253)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTSCSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTT
T ss_pred HHHHHHHHHHC--CCCEEEEEeccCCCCCCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcC
Confidence 44544444432 4674 445654211 12 378888887767899999888888889999999999987653
Q ss_pred CCCHHHHHHHH
Q 006057 117 PVRIEELKNIW 127 (663)
Q Consensus 117 Pvs~eeL~~~~ 127 (663)
|+++++++..+
T Consensus 231 ~~~~~~~~~~l 241 (253)
T 1thf_D 231 EIDVRELKEYL 241 (253)
T ss_dssp CSCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 55666655543
No 191
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=55.87 E-value=72 Score=33.01 Aligned_cols=58 Identities=16% Similarity=0.159 Sum_probs=39.7
Q ss_pred HHHHHHHhccCCCcEEE--EecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHh
Q 006057 76 FKLLELVGLEMDLPVIM--LSGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVII--LSA~~d~e~v~kAl~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr 133 (663)
+++++.++....+|||+ .++-...+.+.+++.+||+.+++ |.-++.+....+...+..
T Consensus 196 ~~ll~~i~~~~~iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~~~~~l~~ai~~ 260 (297)
T 4adt_A 196 IDLILLTRKLKRLPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQKMASSIVMAVSN 260 (297)
T ss_dssp HHHHHHHHHHTSCSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHHHHHHHHHHHHh
Confidence 56677676656788874 44555788999999999999875 445666555555555443
No 192
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=55.84 E-value=47 Score=32.05 Aligned_cols=85 Identities=15% Similarity=0.122 Sum_probs=57.1
Q ss_pred HHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEE---EEeCCCCC-----CCHHHHHHHHhccCCCcEEEEecC
Q 006057 27 LLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLV---ISDVHMPD-----MDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 27 r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLV---IlDv~MPd-----mDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
.+.++.+-+.. +..|. .+.+.+++...+.. ..|+| +..+. +. ...+++++.++.. ++|||+..+-
T Consensus 121 ~~~i~~i~~~~~~~~v~~~~~t~~ea~~a~~~---Gad~i~~~v~g~~-~~~~~~~~~~~~~i~~~~~~-~ipvia~GGI 195 (234)
T 1yxy_A 121 ASFIRQVKEKYPNQLLMADISTFDEGLVAHQA---GIDFVGTTLSGYT-PYSRQEAGPDVALIEALCKA-GIAVIAEGKI 195 (234)
T ss_dssp HHHHHHHHHHCTTCEEEEECSSHHHHHHHHHT---TCSEEECTTTTSS-TTSCCSSSCCHHHHHHHHHT-TCCEEEESCC
T ss_pred HHHHHHHHHhCCCCeEEEeCCCHHHHHHHHHc---CCCEEeeeccccC-CCCcCCCCCCHHHHHHHHhC-CCCEEEECCC
Confidence 34444444443 45544 56678888776654 47887 33332 21 1246778877666 8999998888
Q ss_pred CChHHHHHHHhcCCceEEeC
Q 006057 97 GDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 97 ~d~e~v~kAl~aGA~DYLlK 116 (663)
.+.+.+.+++++||+.++.=
T Consensus 196 ~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 196 HSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CSHHHHHHHHTTCCSEEEEC
T ss_pred CCHHHHHHHHHCCCCEEEEc
Confidence 88999999999999988654
No 193
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=55.75 E-value=4.5 Score=41.20 Aligned_cols=49 Identities=31% Similarity=0.305 Sum_probs=35.4
Q ss_pred cEEEEEeCC--HHHHHHHHHHHHhCCCEEEEECCHHH--HHHHHHhcCCCceEEEEe
Q 006057 15 LRVLAVDDD--PTCLLLLETLLRRCQYHVTTTSQAIT--ALKLLRENKNKFDLVISD 67 (663)
Q Consensus 15 lRVLIVDDD--~~~r~iL~~lL~~~gy~V~tasdg~E--ALelLre~k~~pDLVIlD 67 (663)
.|||||+++ +.....|.++|+..+|+|+......- -.+.|. .||+||++
T Consensus 5 ~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L~----~yDvIIl~ 57 (259)
T 3rht_A 5 TRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELLA----KQDLVILS 57 (259)
T ss_dssp -CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHHH----TCSEEEEE
T ss_pred ceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHHh----cCCEEEEc
Confidence 489999988 66788899999999999887653321 123333 58998886
No 194
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=55.48 E-value=79 Score=32.31 Aligned_cols=85 Identities=12% Similarity=0.030 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCC---CCCCCHHHHHHHH-hcc-CCCcEEEEecCCChH
Q 006057 27 LLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVH---MPDMDGFKLLELV-GLE-MDLPVIMLSGNGDPK 100 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~---MPdmDG~eLLe~I-r~~-~dIPVIILSA~~d~e 100 (663)
...+.......|..+. .+.+.+|+.+.+.. .+|+|=+.-. .-..| ++....+ ..- .++|+|.-++-...+
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~~~---ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip~~~~vIaesGI~t~e 233 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERALKL---SSRLLGVNNRNLRSFEVN-LAVSERLAKMAPSDRLLVGESGIFTHE 233 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHTTS---CCSEEEEECBCTTTCCBC-THHHHHHHHHSCTTSEEEEESSCCSHH
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHHhc---CCCEEEECCCCCccCCCC-hHHHHHHHHhCCCCCcEEEECCCCCHH
Confidence 3444445556788754 67888888766643 5788766421 11222 3334333 222 368999999999999
Q ss_pred HHHHHHhcCCceEEe
Q 006057 101 LVMKGITHGACDYLL 115 (663)
Q Consensus 101 ~v~kAl~aGA~DYLl 115 (663)
.+.++.++||+.+|+
T Consensus 234 dv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 234 DCLRLEKSGIGTFLI 248 (272)
T ss_dssp HHHHHHTTTCCEEEE
T ss_pred HHHHHHHcCCCEEEE
Confidence 999999999999986
No 195
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=55.25 E-value=74 Score=34.56 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=61.7
Q ss_pred CcEEEEEeC----CHHHHHHHHHHHHhC-CCEE--EEECCHHHHHHHHHhcCCCceEEEEeCCCC-----------CCCH
Q 006057 14 GLRVLAVDD----DPTCLLLLETLLRRC-QYHV--TTTSQAITALKLLRENKNKFDLVISDVHMP-----------DMDG 75 (663)
Q Consensus 14 glRVLIVDD----D~~~r~iL~~lL~~~-gy~V--~tasdg~EALelLre~k~~pDLVIlDv~MP-----------dmDG 75 (663)
|..+++++- .....+.++.+-+.+ +..| ..+.+.++|..+... .+|.|.+..+-. +...
T Consensus 249 Gvd~v~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~---G~d~I~v~~~~G~~~~~~~~~~~g~p~ 325 (494)
T 1vrd_A 249 GVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKA---GADAVKVGVGPGSICTTRVVAGVGVPQ 325 (494)
T ss_dssp TCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHT---TCSEEEECSSCSTTCHHHHHHCCCCCH
T ss_pred CCCEEEEEecCCchHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHc---CCCEEEEcCCCCccccccccCCCCccH
Confidence 344555532 233555666665555 4443 356778888666543 588888744311 1233
Q ss_pred HHHHHHHh---ccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 76 FKLLELVG---LEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 76 ~eLLe~Ir---~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
++++..+. ...++|||.-.+-.....+.+++.+||+...+
T Consensus 326 ~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~i 368 (494)
T 1vrd_A 326 LTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMV 368 (494)
T ss_dssp HHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 44444332 23579999988888999999999999987654
No 196
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=55.07 E-value=46 Score=32.65 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcCCCceEEEE-eCCC----CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 47 AITALKLLRENKNKFDLVIS-DVHM----PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIl-Dv~M----PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
..+..+.+.+. .++.|++ ++.- .+. .+++++.++...++|||...+-...+.+.++++.||++.++-
T Consensus 158 ~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 158 LRDWVVEVEKR--GAGEILLTSIDRDGTKSGY-DTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHHHHT--TCSEEEEEETTTTTTCSCC-CHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc--CCCEEEEEeecCCCCcCCC-CHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 44544444433 4565554 4431 122 378888888777899999999888899999999999987654
No 197
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=54.85 E-value=49 Score=37.49 Aligned_cols=103 Identities=13% Similarity=0.161 Sum_probs=68.1
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHHhCCCEEEEE---CCHHHHHHHHHhcCCCceEEEEeCCCCC-CCHH-HHHHHHh-
Q 006057 14 GLRVLAV----DDDPTCLLLLETLLRRCQYHVTTT---SQAITALKLLRENKNKFDLVISDVHMPD-MDGF-KLLELVG- 83 (663)
Q Consensus 14 glRVLIV----DDD~~~r~iL~~lL~~~gy~V~ta---sdg~EALelLre~k~~pDLVIlDv~MPd-mDG~-eLLe~Ir- 83 (663)
+-+||++ |-|..-..++..+|+..||+|+.. ...++.++.+.+. .+|+|.+-..+.. +..+ ++++.++
T Consensus 98 ~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa~~~--~~diVgLS~l~t~~~~~m~~~i~~Lr~ 175 (579)
T 3bul_A 98 NGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTAKEV--NADLIGLSGLITPSLDEMVNVAKEMER 175 (579)
T ss_dssp SCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHHHHH--TCSEEEEECCSTHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHc--CCCEEEEEecCCCCHHHHHHHHHHHHH
Confidence 4578877 667788889999999999999854 3577777777765 6999999886642 1111 2344554
Q ss_pred ccCCCcEEEEecCCChHHHHHHH---hcCCceEEeCCC
Q 006057 84 LEMDLPVIMLSGNGDPKLVMKGI---THGACDYLLKPV 118 (663)
Q Consensus 84 ~~~dIPVIILSA~~d~e~v~kAl---~aGA~DYLlKPv 118 (663)
...++||++-.+.........-+ -.||+.|.....
T Consensus 176 ~g~~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~DA~ 213 (579)
T 3bul_A 176 QGFTIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNAS 213 (579)
T ss_dssp TTCCSCEEEESTTCCHHHHHHHTGGGCSSCEEECCSHH
T ss_pred cCCCCeEEEEccccchhhhhhhhhhcccCCeEEECCHH
Confidence 33578887665555554432111 238888865543
No 198
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=54.78 E-value=85 Score=31.55 Aligned_cols=99 Identities=15% Similarity=0.149 Sum_probs=62.6
Q ss_pred HHHHHHhCCCEEE--EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc--cCCCcEEEEecCCChHHHHH
Q 006057 30 LETLLRRCQYHVT--TTS-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL--EMDLPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 30 L~~lL~~~gy~V~--tas-dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~--~~dIPVIILSA~~d~e~v~k 104 (663)
+++.|..-...+. ... ...+.++.+... .+|.||+|++-...+.-++...++. ...+++++=....+...+.+
T Consensus 6 ~k~~l~~g~~~~g~~~~~~~~p~~~e~a~~~--g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~~di~~ 83 (261)
T 3qz6_A 6 LKKKLSAGKSVVGTMLNLVYNPDIVRIYAEA--GLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDRAHVQR 83 (261)
T ss_dssp HHHHHHTTCCEEEEEESSCCCTTHHHHHHHT--TCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCHHHHHH
T ss_pred HHHHHHCCCCEEEEEEecCCCHHHHHHHhcC--CcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHH
Confidence 4555654333322 222 334445555443 6999999999877776666655532 23456666666667788999
Q ss_pred HHhcCCceEEe-CCCCHHHHHHHHHHH
Q 006057 105 GITHGACDYLL-KPVRIEELKNIWQHV 130 (663)
Q Consensus 105 Al~aGA~DYLl-KPvs~eeL~~~~q~V 130 (663)
++..|++..++ |--+.++++.+++.+
T Consensus 84 ~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 84 LLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp HHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred HHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 99999987654 445678887766654
No 199
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=54.63 E-value=73 Score=30.86 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCCce-EEEEeCCCCC-CC--HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe------CC
Q 006057 48 ITALKLLRENKNKFD-LVISDVHMPD-MD--GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL------KP 117 (663)
Q Consensus 48 ~EALelLre~k~~pD-LVIlDv~MPd-mD--G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl------KP 117 (663)
.+.++.+.+. .++ +++.++.-.+ .. .+++++.++....+|||...+-...+.+.++++.||++.+. .|
T Consensus 155 ~e~~~~~~~~--G~~~i~~~~~~~~g~~~g~~~~~i~~l~~~~~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~ 232 (252)
T 1ka9_F 155 VEWAVKGVEL--GAGEILLTSMDRDGTKEGYDLRLTRMVAEAVGVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGE 232 (252)
T ss_dssp HHHHHHHHHH--TCCEEEEEETTTTTTCSCCCHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTS
T ss_pred HHHHHHHHHc--CCCEEEEecccCCCCcCCCCHHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCC
Confidence 4444444332 356 4555553211 12 38888888777789999998888888999999999999765 46
Q ss_pred CCHHHHHHHH
Q 006057 118 VRIEELKNIW 127 (663)
Q Consensus 118 vs~eeL~~~~ 127 (663)
+++++++..+
T Consensus 233 ~~~~~~~~~l 242 (252)
T 1ka9_F 233 IPIPKLKRYL 242 (252)
T ss_dssp SCHHHHHHHH
T ss_pred CCHHHHHHHH
Confidence 7777776654
No 200
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=54.17 E-value=1.1e+02 Score=30.27 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=39.5
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 61 pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.|++++.- |.-+++.+. ..+|||+...... ..+.+..| .+++..+ +.++|.+++..++..
T Consensus 283 ad~~v~~s------g~~~lEA~a--~G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~~ 342 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPS--LGVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLSD 342 (375)
T ss_dssp CSEEEECC------HHHHHHHHH--HTCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred CcEEEECC------CChHHHHHh--cCCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHhC
Confidence 57776643 444555442 4689886522122 23346778 8999877 999999999998863
No 201
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=53.31 E-value=59 Score=31.49 Aligned_cols=70 Identities=17% Similarity=0.175 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCCCC---HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 45 SQAITALKLLRENKNKFD-LVISDVHMPDMD---GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 45 sdg~EALelLre~k~~pD-LVIlDv~MPdmD---G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.+..+..+.+.+. ..| |.+.|....... -+++++.++...++|||+...-.+.+.+.++++.||+..++-
T Consensus 31 ~d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 31 GDPVEAARAYDEA--GADELVFLDISATHEERAILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp TCHHHHHHHHHHH--TCSCEEEEECCSSTTCHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred CCHHHHHHHHHHc--CCCEEEEEcCCccccCccccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 3555555555543 345 455576543222 245567777777899999999899999999999999887764
No 202
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=52.89 E-value=57 Score=31.48 Aligned_cols=59 Identities=20% Similarity=0.303 Sum_probs=44.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhc---CCCceEEEEeCC
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLREN---KNKFDLVISDVH 69 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy--~V-~tasdg~EALelLre~---k~~pDLVIlDv~ 69 (663)
+|.+.+|..||-++...+..++.++..++ .| ....++.+.+..+... ...||+|++|..
T Consensus 92 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~~ 156 (237)
T 3c3y_A 92 IPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDAD 156 (237)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECSC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECCc
Confidence 35567999999999999999999988776 24 3567887776655321 247999999964
No 203
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=52.25 E-value=62 Score=30.83 Aligned_cols=70 Identities=14% Similarity=0.127 Sum_probs=47.5
Q ss_pred CCHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 45 SQAITALKLLRENKNKFD-LVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 45 sdg~EALelLre~k~~pD-LVIlDv~MPdm---DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.+..+..+.+.+. .+| |.+.|...... ..+++++.++...++|||+...-.+.+.+.+++++||+.+.+-
T Consensus 33 ~~~~~~a~~~~~~--G~d~i~v~~~~~~~~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~ 106 (253)
T 1h5y_A 33 GDPVEMAVRYEEE--GADEIAILDITAAPEGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDATTLFRAGADKVSVN 106 (253)
T ss_dssp ECHHHHHHHHHHT--TCSCEEEEECCCCTTTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred ccHHHHHHHHHHc--CCCEEEEEeCCccccCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 3566666666553 467 44555543221 2356677777667899998877788888999999998887643
No 204
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=51.97 E-value=1.4e+02 Score=28.98 Aligned_cols=70 Identities=13% Similarity=0.252 Sum_probs=48.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhc---CCCceEEEEeCCCCCCCHHHHHHHH
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLREN---KNKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy--~V~-tasdg~EALelLre~---k~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
+|.+.+|..||-++...+..++.++..++ .|. ...++.+.+..+... ...||+|++|... .+-..+++.+
T Consensus 101 ~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~~--~~~~~~l~~~ 176 (247)
T 1sui_A 101 IPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDADK--DNYLNYHKRL 176 (247)
T ss_dssp SCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSCS--TTHHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCch--HHHHHHHHHH
Confidence 45567999999999999999999988775 343 567887776655321 2479999999753 2344455443
No 205
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=51.71 E-value=94 Score=27.37 Aligned_cols=75 Identities=23% Similarity=0.218 Sum_probs=46.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHh--cCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRE--NKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre--~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.|+|.||-| +..... ++-.|.++..+.+.+++.+.+++ ....+.||++.=++-+. --+.++.++.....|+|
T Consensus 3 ~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~~~~digIIlIte~~a~~-i~~~i~~~~~~~~~P~I 76 (109)
T 2d00_A 3 PVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLVERGGYALVAVDEALLPD-PERAVERLMRGRDLPVL 76 (109)
T ss_dssp CCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHHHHCCCSEEEEETTTCSC-HHHHHHHHTTCCCCCEE
T ss_pred ccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHhhCCCeEEEEEeHHHHHh-hHHHHHHHHhCCCCeEE
Confidence 578999998 433332 23347788888777776554443 12368899998777552 22345555545568877
Q ss_pred EEe
Q 006057 92 MLS 94 (663)
Q Consensus 92 ILS 94 (663)
+.-
T Consensus 77 l~I 79 (109)
T 2d00_A 77 LPI 79 (109)
T ss_dssp EEE
T ss_pred EEE
Confidence 654
No 206
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=51.69 E-value=49 Score=32.42 Aligned_cols=71 Identities=14% Similarity=0.191 Sum_probs=49.4
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCC
Q 006057 46 QAITALKLLRENKNKFD-LVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118 (663)
Q Consensus 46 dg~EALelLre~k~~pD-LVIlDv~MPdm---DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPv 118 (663)
+..+..+.+.+. ..| |.+.|....+. .-+++++.++....+|||+.....+.+.+.++++.||+..++--.
T Consensus 31 ~~~~~a~~~~~~--Ga~~i~v~d~~~~~~~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~ 105 (266)
T 2w6r_A 31 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASV 105 (266)
T ss_dssp EHHHHHHHHHHH--TCSEEEEEETTTSSCSSCCCHHHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCC
T ss_pred CHHHHHHHHHHC--CCCEEEEEecCcccCCCcccHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHH
Confidence 455555555543 355 44467543221 127888888877899999988878888899999999999877543
No 207
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=51.29 E-value=19 Score=36.38 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=42.0
Q ss_pred CCCCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhh
Q 006057 197 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLY 253 (663)
Q Consensus 197 ~kk~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRly 253 (663)
..+..-.||.|-+..|++|+...|-+ . ..|-+++ .+=|..+|..|.++|+.-
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGKD--W-~~IAk~V--gTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGRD--F-QAISDVI--GNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSSC--H-HHHHHHH--SSCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCcC--H-HHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 34567789999999999999999954 3 5677774 889999999998886543
No 208
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=51.24 E-value=51 Score=32.72 Aligned_cols=106 Identities=21% Similarity=0.304 Sum_probs=60.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
++++|+.+.+ ...++++++..+. .|......++..+++.. .|++++-.. .+.-|..+++.+. ..+|||+
T Consensus 229 ~~l~i~G~g~--~~~~~~~~~~~~~~~~v~~~g~~~~~~~~~~~----ad~~v~ps~-~e~~~~~~~Ea~a--~G~Pvi~ 299 (374)
T 2iw1_A 229 TLLFVVGQDK--PRKFEALAEKLGVRSNVHFFSGRNDVSELMAA----ADLLLHPAY-QEAAGIVLLEAIT--AGLPVLT 299 (374)
T ss_dssp EEEEEESSSC--CHHHHHHHHHHTCGGGEEEESCCSCHHHHHHH----CSEEEECCS-CCSSCHHHHHHHH--HTCCEEE
T ss_pred eEEEEEcCCC--HHHHHHHHHHcCCCCcEEECCCcccHHHHHHh----cCEEEeccc-cCCcccHHHHHHH--CCCCEEE
Confidence 4566665533 1334444444332 34443333344444442 467776433 2334566666553 4579886
Q ss_pred EecCCChHHHHHHHhcCCceEEeC-CCCHHHHHHHHHHHHHh
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLK-PVRIEELKNIWQHVVRR 133 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlK-Pvs~eeL~~~~q~Vlrr 133 (663)
.....- .+.+..|..+++.. |.+.++|.+++..++..
T Consensus 300 ~~~~~~----~e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~~ 337 (374)
T 2iw1_A 300 TAVCGY----AHYIADANCGTVIAEPFSQEQLNEVLRKALTQ 337 (374)
T ss_dssp ETTSTT----THHHHHHTCEEEECSSCCHHHHHHHHHHHHHC
T ss_pred ecCCCc----hhhhccCCceEEeCCCCCHHHHHHHHHHHHcC
Confidence 543222 23455677889997 99999999999998853
No 209
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=51.16 E-value=1.2e+02 Score=30.46 Aligned_cols=100 Identities=15% Similarity=0.163 Sum_probs=53.4
Q ss_pred cEEEEE-eCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 15 LRVLAV-DDDPTCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 15 lRVLIV-DDD~~~r~iL~~lL~~~gy~V~tas--dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
++++++ .+.+..++.+++++.... .|.... ...+...++. ..|++++.- -|+ +++.+ ...+|||
T Consensus 231 ~~lv~~~g~~~~~~~~l~~~~~~~~-~v~~~g~~g~~~~~~~~~----~ad~~v~~S-----~g~-~lEA~--a~G~PvI 297 (376)
T 1v4v_A 231 LTFVYPVHLNPVVREAVFPVLKGVR-NFVLLDPLEYGSMAALMR----ASLLLVTDS-----GGL-QEEGA--ALGVPVV 297 (376)
T ss_dssp SEEEEECCSCHHHHHHHHHHHTTCT-TEEEECCCCHHHHHHHHH----TEEEEEESC-----HHH-HHHHH--HTTCCEE
T ss_pred eEEEEECCCCHHHHHHHHHHhccCC-CEEEECCCCHHHHHHHHH----hCcEEEECC-----cCH-HHHHH--HcCCCEE
Confidence 455554 444444455555443211 333331 2223334443 357776542 244 44443 3578998
Q ss_pred EEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
+.........+ +..| .+++.. .+.++|..++..++.
T Consensus 298 ~~~~~~~~~~~---~~~g-~g~lv~-~d~~~la~~i~~ll~ 333 (376)
T 1v4v_A 298 VLRNVTERPEG---LKAG-ILKLAG-TDPEGVYRVVKGLLE 333 (376)
T ss_dssp ECSSSCSCHHH---HHHT-SEEECC-SCHHHHHHHHHHHHT
T ss_pred eccCCCcchhh---hcCC-ceEECC-CCHHHHHHHHHHHHh
Confidence 75433333332 4455 577774 499999999998885
No 210
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.98 E-value=31 Score=27.53 Aligned_cols=46 Identities=13% Similarity=0.265 Sum_probs=34.4
Q ss_pred CCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQ 248 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQ 248 (663)
..+..||+|-|..|.+++...|-+ . .+|...| |+.-|..+|..+-+
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yGKd--f-~~I~~~~-v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYGKN--F-FRIRKEL-LPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTCSC--H-HHHHHHS-CTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhCcc--H-HHHHHHH-cCCCcHHHHHHHHh
Confidence 345689999999999999999854 3 5666643 57788888876544
No 211
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=50.83 E-value=11 Score=38.99 Aligned_cols=55 Identities=18% Similarity=0.131 Sum_probs=42.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
+-++.+||-++.....|++-++...-..+...|+.+++..+.....++|+|++|=
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP 167 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP 167 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence 3589999999999999998887644334456788888877654444699999995
No 212
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=50.48 E-value=61 Score=34.74 Aligned_cols=93 Identities=18% Similarity=0.239 Sum_probs=52.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~dIPVI 91 (663)
|+.|+|||.|+...+.++ ..|+.|+...- -.+.|+.+ .-...|+||+-+.-+ ..-..++..++ ..++++||
T Consensus 27 g~~vvvId~d~~~v~~~~----~~g~~vi~GDat~~~~L~~a--gi~~A~~viv~~~~~-~~n~~i~~~ar~~~p~~~Ii 99 (413)
T 3l9w_A 27 GVKMVVLDHDPDHIETLR----KFGMKVFYGDATRMDLLESA--GAAKAEVLINAIDDP-QTNLQLTEMVKEHFPHLQII 99 (413)
T ss_dssp TCCEEEEECCHHHHHHHH----HTTCCCEESCTTCHHHHHHT--TTTTCSEEEECCSSH-HHHHHHHHHHHHHCTTCEEE
T ss_pred CCCEEEEECCHHHHHHHH----hCCCeEEEcCCCCHHHHHhc--CCCccCEEEECCCCh-HHHHHHHHHHHHhCCCCeEE
Confidence 567888888876554433 34666543321 12233332 223578888755321 12233344444 34677887
Q ss_pred EEecCCChHHHHHHHhcCCceEEe
Q 006057 92 MLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 92 ILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+.+. +...+....++||+..+.
T Consensus 100 ara~--~~~~~~~L~~~Gad~Vi~ 121 (413)
T 3l9w_A 100 ARAR--DVDHYIRLRQAGVEKPER 121 (413)
T ss_dssp EEES--SHHHHHHHHHTTCSSCEE
T ss_pred EEEC--CHHHHHHHHHCCCCEEEC
Confidence 7664 455677778899998764
No 213
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=49.83 E-value=1.6e+02 Score=29.95 Aligned_cols=97 Identities=12% Similarity=0.122 Sum_probs=60.9
Q ss_pred HHHHHHhCCC-EEEE--ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHH
Q 006057 30 LETLLRRCQY-HVTT--TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 30 L~~lL~~~gy-~V~t--asdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir--~~~dIPVIILSA~~d~e~v~k 104 (663)
+++.|+. |. .+.. -....+.++.+... .+|.|++|++-...+--.+...++ .....++++=+...+...+.+
T Consensus 30 ~k~~l~~-G~~~~gl~~~~~~p~~~e~a~~~--GaD~v~lDlEh~~~~~~~~~~~l~a~~~~~~~~~VRv~~~d~~di~~ 106 (287)
T 2v5j_A 30 FKAALKA-GRPQIGLWLGLSSSYSAELLAGA--GFDWLLIDGEHAPNNVQTVLTQLQAIAPYPSQPVVRPSWNDPVQIKQ 106 (287)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTS--CCSEEEEESSSSSCCHHHHHHHHHHHTTSSSEEEEECSSSCHHHHHH
T ss_pred HHHHHHC-CCcEEEEEEECCCHHHHHHHHhC--CCCEEEEeCCCccchHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHH
Confidence 5566654 43 3332 22334444555433 699999999765555444444443 223678888888788888999
Q ss_pred HHhcCCceEEe-CCCCHHHHHHHHHH
Q 006057 105 GITHGACDYLL-KPVRIEELKNIWQH 129 (663)
Q Consensus 105 Al~aGA~DYLl-KPvs~eeL~~~~q~ 129 (663)
++..|++..++ |=-+.++++.+++.
T Consensus 107 ~ld~ga~~ImlP~V~saeea~~~~~~ 132 (287)
T 2v5j_A 107 LLDVGTQTLLVPMVQNADEAREAVRA 132 (287)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHHH
T ss_pred HHhCCCCEEEeCCCCCHHHHHHHHHH
Confidence 99999987544 33567887665543
No 214
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=49.37 E-value=11 Score=41.78 Aligned_cols=52 Identities=23% Similarity=0.346 Sum_probs=41.8
Q ss_pred CCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~ 255 (663)
+....||.|-|..|+.++...|-+ . +.|-+.+ ..=|..+|.+|.++||..+.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yGkd--w-~~IA~~V--gTKT~~Qvk~fy~~~kkr~~ 429 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYGRD--F-QAISDVI--GNKSVVQVKNFFVNYRRRFN 429 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHTTC--H-HHHHHHH--SSCCHHHHHHHHHHTTTTTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHCcC--H-HHHHHHh--CCCCHHHHHHHHHHHHHHhC
Confidence 446789999999999999999954 3 5677775 45699999999998776544
No 215
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=49.09 E-value=71 Score=29.91 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=47.6
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcC--CCceEEEEeCCCCCCCHHHHHHHH
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLRENK--NKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy--~V-~tasdg~EALelLre~k--~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
.+|.+.+|..||-++...+..++.++..+. .| ....++.+.+..+.... ..+|+|++|.. ..+-.++++.+
T Consensus 90 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~--~~~~~~~l~~~ 165 (229)
T 2avd_A 90 ALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD--KENCSAYYERC 165 (229)
T ss_dssp TSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC--STTHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC--HHHHHHHHHHH
Confidence 345567999999999999999998887764 23 34567777665554321 36999999864 23333445433
No 216
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=48.76 E-value=1.3e+02 Score=30.93 Aligned_cols=88 Identities=20% Similarity=0.048 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEeCC---------------------CCCCCHHHHH
Q 006057 26 CLLLLETLLRRCQYHVTT--T---SQAITALKLLRENKNKFDLVISDVH---------------------MPDMDGFKLL 79 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~t--a---sdg~EALelLre~k~~pDLVIlDv~---------------------MPdmDG~eLL 79 (663)
..+.++.+-+..+..|.. + .+.++|..+... ..|.|++..+ ..+....+.+
T Consensus 166 ~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~a~~a~~~---Gad~I~v~~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l 242 (349)
T 1p0k_A 166 ALKRIEQICSRVSVPVIVKEVGFGMSKASAGKLYEA---GAAAVDIGGYGGTNFSKIENLRRQRQISFFNSWGISTAASL 242 (349)
T ss_dssp HHHHHHHHHHHCSSCEEEEEESSCCCHHHHHHHHHH---TCSEEEEEC---------------CCGGGGTTCSCCHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCCHHHHHHHHHc---CCCEEEEcCCCCcchhhHHHhhcccchhhhhccCccHHHHH
Confidence 345566555555554432 2 456666655543 4788877532 1124456666
Q ss_pred HHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 80 ELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 80 e~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
..++.. .++|||...+-...+.+.+++.+||+...+-
T Consensus 243 ~~v~~~~~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 243 AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp HHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHhcCCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 666544 4799999999999999999999999987654
No 217
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=47.92 E-value=71 Score=30.56 Aligned_cols=60 Identities=23% Similarity=0.463 Sum_probs=43.5
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcC--CCceEEEEeCC
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLRENK--NKFDLVISDVH 69 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy--~V-~tasdg~EALelLre~k--~~pDLVIlDv~ 69 (663)
.+|.+.+|..||-++...+..++.++..++ .| ....++.+.+..+.... ..||+|++|..
T Consensus 93 ~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~~ 157 (232)
T 3cbg_A 93 QLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDAD 157 (232)
T ss_dssp TSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECSC
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECCC
Confidence 345567999999999999888888877664 23 35677777766554321 46999999864
No 218
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=47.87 E-value=90 Score=32.88 Aligned_cols=95 Identities=12% Similarity=0.076 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCC--EEEEEC--CHHHHHHHHHhcCCCc----eEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCC
Q 006057 27 LLLLETLLRRCQY--HVTTTS--QAITALKLLRENKNKF----DLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGD 98 (663)
Q Consensus 27 r~iL~~lL~~~gy--~V~tas--dg~EALelLre~k~~p----DLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d 98 (663)
...|+++++..+. .|.... +.++...++.. . |++++--. .+.-|+.+++.+. ..+|||...
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~~----a~~~~dv~v~pS~-~Eg~~~~~lEAma--~G~PvI~s~---- 389 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYAY----LASKGSVFALTSF-YEPFGLAPVEAMA--SGLPAVVTR---- 389 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHHH----HHHTTCEEEECCS-CBCCCSHHHHHHH--TTCCEEEES----
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHHh----cCcCCCEEEECcc-cCCCCcHHHHHHH--cCCCEEEec----
Confidence 6778888887654 244443 34666666653 5 88887433 2344566776653 568988642
Q ss_pred hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 99 PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 99 ~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.....+.+..|.++++..|-+.++|..++..++.
T Consensus 390 ~~g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll~ 423 (499)
T 2r60_A 390 NGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFE 423 (499)
T ss_dssp SBHHHHHTGGGTSSEEECTTCHHHHHHHHHHHHS
T ss_pred CCCHHHHhcCCceEEEeCCCCHHHHHHHHHHHHh
Confidence 2345566778889999999999999999988874
No 219
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=47.85 E-value=2e+02 Score=28.82 Aligned_cols=97 Identities=12% Similarity=0.125 Sum_probs=59.2
Q ss_pred HHHHHHhCCC-EE--EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHH
Q 006057 30 LETLLRRCQY-HV--TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 30 L~~lL~~~gy-~V--~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir--~~~dIPVIILSA~~d~e~v~k 104 (663)
+++.|+. |. .+ .......+.++.+... .+|.|++|++-...+--.+...++ .....++++=+...+...+.+
T Consensus 9 ~k~~l~~-g~~~~g~~~~~~~p~~~e~a~~~--GaD~v~lDlE~~~~~~~~~~~~~~a~~~~~~~~~VRv~~~~~~~i~~ 85 (267)
T 2vws_A 9 FKERLRK-GEVQIGLWLSSTTAYMAEIAATS--GYDWLLIDGEHAPNTIQDLYHQLQAVAPYASQPVIRPVEGSKPLIKQ 85 (267)
T ss_dssp HHHHHHT-TCCEEEEEECSCCHHHHHHHHTT--CCSEEEEETTTSCCCHHHHHHHHHHHTTSSSEEEEECSSCCHHHHHH
T ss_pred HHHHHHC-CCCEEEEEEeCCCHHHHHHHHhC--CCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Confidence 4555554 43 22 2222333444555433 699999999765455444444443 223567887777777888999
Q ss_pred HHhcCCceEEe-CCCCHHHHHHHHHH
Q 006057 105 GITHGACDYLL-KPVRIEELKNIWQH 129 (663)
Q Consensus 105 Al~aGA~DYLl-KPvs~eeL~~~~q~ 129 (663)
++..|++..++ |=-+.++++.+++.
T Consensus 86 ~l~~g~~~I~~P~V~s~ee~~~~~~~ 111 (267)
T 2vws_A 86 VLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_dssp HHHTTCCEEEECCCCSHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCCCHHHHHHHHHH
Confidence 99999987544 33567887666544
No 220
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori}
Probab=47.55 E-value=70 Score=28.02 Aligned_cols=106 Identities=14% Similarity=0.179 Sum_probs=66.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECC--HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC-cE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQ--AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL-PV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasd--g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI-PV 90 (663)
.++++|+.+.+. ...++.++...+..|.. .. .++..+++. ..|++|+-.. .+.-|+.+++.+. ..+ ||
T Consensus 32 ~~~l~i~G~g~~-~~~~~~~~~~~~~~v~~-g~~~~~~~~~~~~----~adv~v~ps~-~e~~~~~~~Eama--~G~vPv 102 (166)
T 3qhp_A 32 DIVLLLKGKGPD-EKKIKLLAQKLGVKAEF-GFVNSNELLEILK----TCTLYVHAAN-VESEAIACLEAIS--VGIVPV 102 (166)
T ss_dssp GEEEEEECCSTT-HHHHHHHHHHHTCEEEC-CCCCHHHHHHHHT----TCSEEEECCC-SCCCCHHHHHHHH--TTCCEE
T ss_pred CeEEEEEeCCcc-HHHHHHHHHHcCCeEEE-eecCHHHHHHHHH----hCCEEEECCc-ccCccHHHHHHHh--cCCCcE
Confidence 578888887653 46677778777766554 32 455555554 4688887443 3445667777653 455 88
Q ss_pred EEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
|..+..... ...+..+ .++..|-+.++|...+..++..
T Consensus 103 i~~~~~~~~---~~~~~~~--~~~~~~~~~~~l~~~i~~l~~~ 140 (166)
T 3qhp_A 103 IANSPLSAT---RQFALDE--RSLFEPNNAKDLSAKIDWWLEN 140 (166)
T ss_dssp EECCTTCGG---GGGCSSG--GGEECTTCHHHHHHHHHHHHHC
T ss_pred EeeCCCCch---hhhccCC--ceEEcCCCHHHHHHHHHHHHhC
Confidence 863322222 1222333 3388899999999999988763
No 221
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=47.54 E-value=36 Score=36.85 Aligned_cols=53 Identities=25% Similarity=0.349 Sum_probs=29.8
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEEC---CHH----HHHHHHHhcCCCceEEEEeC
Q 006057 14 GLRVLAVDDDP---TCLLLLETLLRRCQYHVTTTS---QAI----TALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 14 glRVLIVDDD~---~~r~iL~~lL~~~gy~V~tas---dg~----EALelLre~k~~pDLVIlDv 68 (663)
|.||++||-|+ ...+.+...-...+..+..+. +.. +++..++. ..+|+||+|.
T Consensus 129 G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~~~--~~~D~VIIDT 191 (433)
T 2xxa_A 129 KKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEAKL--KFYDVLLVDT 191 (433)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred CCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHHHh--CCCCEEEEEC
Confidence 67888888885 223333333334455555432 222 23444432 2689999998
No 222
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=47.44 E-value=53 Score=32.05 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCC---CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 46 QAITALKLLRENKNKFD-LVISDVHMP---DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 46 dg~EALelLre~k~~pD-LVIlDv~MP---dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+..+..+.+.+. .+| |.+.|+.-. ...-+++++.++....+|||+-..-.+.+.+.++++.||+..++-
T Consensus 36 ~~~~~a~~~~~~--G~~~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 36 LLRDWVVEVEKR--GAGEILLTSIDRDGTKSGYDTEMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEETTTTTCSSCCCHHHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred CHHHHHHHHHHc--CCCEEEEEecCcccCCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 455555555543 456 445576422 222368888888878999999888888899999999998876643
No 223
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=46.55 E-value=80 Score=30.60 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=44.0
Q ss_pred CcEEEEEe------CCHHHHHHHHHHHHhCCCEEEEE----CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 14 GLRVLAVD------DDPTCLLLLETLLRRCQYHVTTT----SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 14 glRVLIVD------DD~~~r~iL~~lL~~~gy~V~ta----sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
+-||++|+ |.......+.+.|++.|+++... .+.++..+.+++ .|.|++ |+.+-+.+++.++
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~~----ad~I~l----~GG~~~~l~~~L~ 98 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRK----NDFIYV----TGGNTFFLLQELK 98 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHHH----SSEEEE----CCSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHHh----CCEEEE----CCCCHHHHHHHHH
Confidence 56899986 34456777888899999988877 467776666664 477775 7777776666553
No 224
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=45.93 E-value=85 Score=33.00 Aligned_cols=93 Identities=12% Similarity=-0.014 Sum_probs=57.9
Q ss_pred EEEEEeCCHHHH----HHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 16 RVLAVDDDPTCL----LLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 16 RVLIVDDD~~~r----~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
-|||-|.+-... ..++.+-+.... ..+.+.+.+++.+.+.. .+|+|.+|-. +--++-+.++.-..-.
T Consensus 204 ~vlikdnHi~~~G~i~~Av~~ar~~~p~~kIeVEVdtldea~eAl~a---GaD~I~LDn~----~~~~l~~av~~l~~~v 276 (320)
T 3paj_A 204 AYLIKENHIIACGGIRQAISTAKQLNPGKPVEVETETLAELEEAISA---GADIIMLDNF----SLEMMREAVKINAGRA 276 (320)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEEESC----CHHHHHHHHHHHTTSS
T ss_pred hhccHHHHHHHhCCHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHc---CCCEEEECCC----CHHHHHHHHHHhCCCC
Confidence 377777664332 233333333332 34578889999888874 5899999973 3333333333222234
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEe
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.|..|+.-..+.+.+..+.|++.|-+
T Consensus 277 ~ieaSGGIt~~~I~~~a~tGVD~isv 302 (320)
T 3paj_A 277 ALENSGNITLDNLKECAETGVDYISV 302 (320)
T ss_dssp EEEEESSCCHHHHHHHHTTTCSEEEC
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 56688888899999999999976643
No 225
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=45.85 E-value=25 Score=34.46 Aligned_cols=62 Identities=16% Similarity=0.195 Sum_probs=48.2
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+.+++.+.+. +||+| + .||+.-- ++++.+++..++|||+=..-.+.+.+++|+++||+..-+
T Consensus 117 ~~~~~~i~~~--~PD~i--E-iLPGi~p-~iI~~i~~~~~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 117 NKGVALIQKV--QPDCI--E-LLPGIIP-EQVQKMTQKLHIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHHHHHHHHH--CCSEE--E-EECTTCH-HHHHHHHHHHCCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred HHHHHHHhhc--CCCEE--E-ECCchhH-HHHHHHHHhcCCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 3467777764 68977 2 2577654 788888877899999877788899999999999987654
No 226
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=45.45 E-value=1.1e+02 Score=28.58 Aligned_cols=60 Identities=18% Similarity=0.233 Sum_probs=44.4
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--E-EEECCHHHHHHHHHhcC--CCceEEEEeCC
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYH--V-TTTSQAITALKLLRENK--NKFDLVISDVH 69 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~--V-~tasdg~EALelLre~k--~~pDLVIlDv~ 69 (663)
.+|.+.+|..||-++...+..++.+...+.. | ....++.+.+..+.... ..||+|++|..
T Consensus 85 ~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~~ 149 (225)
T 3tr6_A 85 ALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDAD 149 (225)
T ss_dssp TCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECSC
T ss_pred hCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECCC
Confidence 4565789999999999999999999877642 4 35677777766554211 37999999874
No 227
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=45.39 E-value=90 Score=31.23 Aligned_cols=43 Identities=12% Similarity=0.274 Sum_probs=30.8
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
..+|||+........ +.++.| .+++..| +.++|.+++..++..
T Consensus 300 ~G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll~d 342 (384)
T 1vgv_A 300 LGKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLLKD 342 (384)
T ss_dssp GTCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHHHC
T ss_pred cCCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHHhC
Confidence 468998764323322 235668 8999988 999999999998853
No 228
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=45.39 E-value=30 Score=33.24 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=47.3
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCCC--------CHHHHHHHHhcc--CCCcEEEEecCCChHHHHHHHhcCCce
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMPDM--------DGFKLLELVGLE--MDLPVIMLSGNGDPKLVMKGITHGACD 112 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MPdm--------DG~eLLe~Ir~~--~dIPVIILSA~~d~e~v~kAl~aGA~D 112 (663)
.+.+.+|+.... . ..|.|+++-..|.. -|++.++.+... ..+|||.+-+-. .+.+.+++++||++
T Consensus 94 s~~t~~e~~~A~-~---GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~~~iPviaiGGI~-~~nv~~~~~~Ga~g 168 (210)
T 3ceu_A 94 SCHSVEEVKNRK-H---FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKIIDSKVMALGGIN-EDNLLEIKDFGFGG 168 (210)
T ss_dssp EECSHHHHHTTG-G---GSSEEEECCCC---------CCCCHHHHHHHHHTTCSSTTEEEESSCC-TTTHHHHHHTTCSE
T ss_pred ecCCHHHHHHHh-h---CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcCCCCCEEEECCCC-HHHHHHHHHhCCCE
Confidence 667888876553 2 48999887654422 367788777654 589999887765 66788899999998
Q ss_pred EE
Q 006057 113 YL 114 (663)
Q Consensus 113 YL 114 (663)
+-
T Consensus 169 Va 170 (210)
T 3ceu_A 169 AV 170 (210)
T ss_dssp EE
T ss_pred EE
Confidence 73
No 229
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=45.38 E-value=92 Score=30.06 Aligned_cols=80 Identities=19% Similarity=0.178 Sum_probs=52.5
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCC---CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc---CCceEEe---
Q 006057 46 QAITALKLLRENKNKFD-LVISDVHMPD---MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH---GACDYLL--- 115 (663)
Q Consensus 46 dg~EALelLre~k~~pD-LVIlDv~MPd---mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~a---GA~DYLl--- 115 (663)
+..+..+.+.+. .+| |+++++.-.+ .-.+++++.++....+|||+..+-...+.+.+++++ ||+.++.
T Consensus 147 ~~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~a 224 (244)
T 1vzw_A 147 DLYETLDRLNKE--GCARYVVTDIAKDGTLQGPNLELLKNVCAATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKA 224 (244)
T ss_dssp BHHHHHHHHHHT--TCCCEEEEEC-------CCCHHHHHHHHHTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHH
T ss_pred CHHHHHHHHHhC--CCCEEEEeccCcccccCCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHH
Confidence 455554444432 467 4556654211 123678888876678999998888888999999999 9998764
Q ss_pred ---CCCCHHHHHHHH
Q 006057 116 ---KPVRIEELKNIW 127 (663)
Q Consensus 116 ---KPvs~eeL~~~~ 127 (663)
.|+...+++..+
T Consensus 225 l~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 225 LYAKAFTLEEALEAT 239 (244)
T ss_dssp HHTTSSCHHHHHHHH
T ss_pred HHcCCCCHHHHHHHh
Confidence 466666665543
No 230
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=44.86 E-value=1e+02 Score=29.82 Aligned_cols=71 Identities=20% Similarity=0.203 Sum_probs=46.7
Q ss_pred CCHHHHHHHHHhcCCCceEE-EEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 45 SQAITALKLLRENKNKFDLV-ISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 45 sdg~EALelLre~k~~pDLV-IlDv~MPdm---DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
.+..+..+.+.+. ..|.| +.|..-... ..+++++.++...++|||+...-.+.+.+.+++++||+..++--
T Consensus 30 ~d~~~~a~~~~~~--Gad~i~v~d~~~~~~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~ 104 (253)
T 1thf_D 30 GDPVELGKFYSEI--GIDELVFLDITASVEKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINT 104 (253)
T ss_dssp TCHHHHHHHHHHT--TCCEEEEEESSCSSSHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred cCHHHHHHHHHHc--CCCEEEEECCchhhcCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 3555555555543 45544 445432211 13556677777778999998888888899999999998877643
No 231
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=44.70 E-value=1.7e+02 Score=33.07 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=64.7
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhC-CCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCC--------------CC
Q 006057 14 GLRVLAVDDD----PTCLLLLETLLRRC-QYHVT--TTSQAITALKLLRENKNKFDLVISDVHM--------------PD 72 (663)
Q Consensus 14 glRVLIVDDD----~~~r~iL~~lL~~~-gy~V~--tasdg~EALelLre~k~~pDLVIlDv~M--------------Pd 72 (663)
|.-|++||-- ....+.++.+-+.. ...|. -+.+++.|..++.. ..|.|.+-+-- |.
T Consensus 293 GvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~e~a~~Li~a---GAD~vkVGiGpGSiCtTr~v~GvG~PQ 369 (556)
T 4af0_A 293 GLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTREQAAQLIAA---GADGLRIGMGSGSICITQEVMAVGRPQ 369 (556)
T ss_dssp TCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHH---TCSEEEECSSCSTTBCCTTTCCSCCCH
T ss_pred CCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCHHHHHHHHHc---CCCEEeecCCCCcccccccccCCCCcH
Confidence 4567888732 34444454444443 23443 56788888888875 37888876622 22
Q ss_pred CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 73 MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 73 mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
...+--+........+|||.=-+-.....+.+|+.+||+..++-
T Consensus 370 ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlG 413 (556)
T 4af0_A 370 GTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMG 413 (556)
T ss_dssp HHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEc
Confidence 12221222334556799999888889999999999999998764
No 232
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=43.84 E-value=1.9e+02 Score=27.66 Aligned_cols=114 Identities=12% Similarity=0.101 Sum_probs=63.0
Q ss_pred CCCCCcEEEEEeCCH--HHHHHHHHHHHhCCCEEEEECC-----------HHHHHHHHHhcCCCceEEEEeCCCCCCCHH
Q 006057 10 QFPSGLRVLAVDDDP--TCLLLLETLLRRCQYHVTTTSQ-----------AITALKLLRENKNKFDLVISDVHMPDMDGF 76 (663)
Q Consensus 10 ~FP~glRVLIVDDD~--~~r~iL~~lL~~~gy~V~tasd-----------g~EALelLre~k~~pDLVIlDv~MPdmDG~ 76 (663)
+-|..|||.|--|+. ...+.|.+.|+..||+|+-+.. +..+-+.+.+.+...-|+||- .|.
T Consensus 17 ~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G~~~~~~~dYPd~a~~va~~V~~g~~d~GIliCG------TGi 90 (166)
T 3s5p_A 17 QGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLGTESDASVDYPDFAKIGCEAVTSGRADCCILVCG------TGI 90 (166)
T ss_dssp --CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEEC--------CHHHHHHHHHHHTTSCSEEEEEES------SSH
T ss_pred CCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcCCCCCCCCCHHHHHHHHHHHHHcCCCcEEEEEcC------CcH
Confidence 457779999998886 6678899999999999875421 112223444443345566663 333
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC---CCHHHHHHHHHHHHH
Q 006057 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP---VRIEELKNIWQHVVR 132 (663)
Q Consensus 77 eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP---vs~eeL~~~~q~Vlr 132 (663)
-..-..-+.+.++..++. +...+..+.++-=.-.|.-+ +.++..+.+++.++.
T Consensus 91 G~sIaANKv~GIRAAlc~---d~~sA~laR~hNnANVL~lG~Rvig~~lA~~Iv~~fL~ 146 (166)
T 3s5p_A 91 GISIAANKMKGIRCALCS---TEYDAEMARKHNNANALALGGRTTGPEVAASILSRFLS 146 (166)
T ss_dssp HHHHHHHTSTTCCEEECS---SHHHHHHHHHTTCCCEEEEETTTSCHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCeEEEEeC---CHHHHHHHHHhCCCcEEEEcccccCHHHHHHHHHHHHc
Confidence 332222233444443332 34445555544433333333 456666667776664
No 233
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=43.68 E-value=13 Score=37.83 Aligned_cols=56 Identities=21% Similarity=0.308 Sum_probs=39.6
Q ss_pred HHHHHHHhccCCCcEEEEec------CCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 76 FKLLELVGLEMDLPVIMLSG------NGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA------~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
|++++.+|.. +|+|+|+= +.....+.+|.++|+++.|+-.+.++|.. .+....++.
T Consensus 79 ~~~~~~~r~~--~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~-~~~~~~~~~ 140 (252)
T 3tha_A 79 FELLARIKTK--KALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESD-DLIKECERY 140 (252)
T ss_dssp HHHHHHCCCS--SEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCH-HHHHHHHHT
T ss_pred HHHHHHHhcC--CCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHH-HHHHHHHHc
Confidence 4444555433 89999874 34556788999999999999999888844 455544443
No 234
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=43.48 E-value=45 Score=25.28 Aligned_cols=50 Identities=22% Similarity=0.284 Sum_probs=38.0
Q ss_pred ceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhhhh
Q 006057 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (663)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~ 255 (663)
|-.||+|-....+++|..+|..+= ..|.+.|+..+-|-.++.. .|+.|++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W--~~Ia~~~~~~~Rt~~qcr~---Rw~~~~k 51 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNW--SKILLHYKFNNRTSVMLKD---RWRTMKK 51 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCH--HHHHHHSCCSSCCHHHHHH---HHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCH--HHHHHHcCCCCCCHHHHHH---HHHHHHc
Confidence 457999999999999999996442 5688888544788888877 4555654
No 235
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=43.47 E-value=18 Score=34.15 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=45.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhccC-CCcEEE--EecCCChHHHHHHHhcCCceEEeCCCCH
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGLEM-DLPVIM--LSGNGDPKLVMKGITHGACDYLLKPVRI 120 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPd--mDG~eLLe~Ir~~~-dIPVII--LSA~~d~e~v~kAl~aGA~DYLlKPvs~ 120 (663)
+.+++++.++.-...+|+ +++.++- .+|.++++.++... +.||++ +..+.-..++..+.++||+....-+...
T Consensus 11 ~~~~~~~~~~~~~~~v~~--iev~~~~~~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~ 88 (207)
T 3ajx_A 11 STEAALELAGKVAEYVDI--IELGTPLIKAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVTVLGSAD 88 (207)
T ss_dssp CHHHHHHHHHHHGGGCSE--EEECHHHHHHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhhccCCE--EEECcHHHHhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCC
Confidence 345555555432111232 4444431 24566777776553 788874 4432123348889999999988766554
Q ss_pred -HHHHHHHHH
Q 006057 121 -EELKNIWQH 129 (663)
Q Consensus 121 -eeL~~~~q~ 129 (663)
+.+..+++.
T Consensus 89 ~~~~~~~~~~ 98 (207)
T 3ajx_A 89 DSTIAGAVKA 98 (207)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 445444443
No 236
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=43.18 E-value=22 Score=35.31 Aligned_cols=106 Identities=13% Similarity=0.053 Sum_probs=60.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC--CHHHHHHHHHhcCCCceEEEEeCC---------CCCCCHHHHHHHHh
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTS--QAITALKLLRENKNKFDLVISDVH---------MPDMDGFKLLELVG 83 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tas--dg~EALelLre~k~~pDLVIlDv~---------MPdmDG~eLLe~Ir 83 (663)
++++|+.+.+ ....++++.+..+-.|.... +..+..+++.. .|++++-.. -.+.-|+.+++.+.
T Consensus 189 ~~l~i~G~g~-~~~~l~~~~~~~~~~v~~~g~~~~~~l~~~~~~----adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma 263 (342)
T 2iuy_A 189 RRLVLAGPAW-EPEYFDEITRRYGSTVEPIGEVGGERRLDLLAS----AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAV 263 (342)
T ss_dssp CCEEEESCCC-CHHHHHHHHHHHTTTEEECCCCCHHHHHHHHHH----CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHH
T ss_pred cEEEEEeCcc-cHHHHHHHHHHhCCCEEEeccCCHHHHHHHHHh----CCEEEECCcccccccccccccCccHHHHHHHh
Confidence 4566665533 22333344333332333322 33444555543 477776433 13444666776653
Q ss_pred ccCCCcEEEEecCCChHHHHHHHhc--CCceEEeCCCCHHHHHHHHHHHHH
Q 006057 84 LEMDLPVIMLSGNGDPKLVMKGITH--GACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 84 ~~~dIPVIILSA~~d~e~v~kAl~a--GA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
..+|||... . ....+.+.. |..+++..| +.++|.+++..++.
T Consensus 264 --~G~PvI~s~-~---~~~~e~~~~~~~~~g~~~~~-d~~~l~~~i~~l~~ 307 (342)
T 2iuy_A 264 --SGTPVVGTG-N---GCLAEIVPSVGEVVGYGTDF-APDEARRTLAGLPA 307 (342)
T ss_dssp --TTCCEEECC-T---TTHHHHGGGGEEECCSSSCC-CHHHHHHHHHTSCC
T ss_pred --cCCCEEEcC-C---CChHHHhcccCCCceEEcCC-CHHHHHHHHHHHHH
Confidence 568887532 2 235566677 888999999 99999998876653
No 237
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=43.13 E-value=32 Score=33.21 Aligned_cols=68 Identities=18% Similarity=0.284 Sum_probs=46.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYH---VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy~---V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
+|.+-+|..||-++...+..++.++..++. |. ...++.+.+..+. ...||+|++|...+. -.++++.+
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~--~~~fD~V~~d~~~~~--~~~~l~~~ 149 (221)
T 3dr5_A 78 LADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLA--NDSYQLVFGQVSPMD--LKALVDAA 149 (221)
T ss_dssp SCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSC--TTCEEEEEECCCTTT--HHHHHHHH
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhc--CCCcCeEEEcCcHHH--HHHHHHHH
Confidence 455679999999999999999999887754 54 4556666544331 247999999975433 33345433
No 238
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=43.03 E-value=42 Score=25.98 Aligned_cols=50 Identities=20% Similarity=0.219 Sum_probs=37.8
Q ss_pred CCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~ 255 (663)
..|-.||+|-..+.+++|..+|..+= ..|.+.| ++-|-.++..+- +.||+
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~~~W--~~Ia~~~--~~Rt~~qcr~Rw---~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQQDW--KFLASHF--PNRTDQQCQYRW---LRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCTTCH--HHHHHHC--SSSCHHHHHHHH---HHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCH--HHHHHHc--cCCCHHHHHHHH---HHHcC
Confidence 45678999999999999999995332 4677776 788888888744 44554
No 239
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=42.98 E-value=1.1e+02 Score=30.32 Aligned_cols=67 Identities=12% Similarity=0.052 Sum_probs=42.3
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHH
Q 006057 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQ 128 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q 128 (663)
.+++|=+.+. .-++++.++.+++...-.+|-...--+.+.+++++++||...+..-++++-++.+.+
T Consensus 38 Gi~~iEvt~~--t~~a~~~I~~l~~~~p~~~IGAGTVlt~~~a~~ai~AGA~fivsP~~~~evi~~~~~ 104 (217)
T 3lab_A 38 GVHLLEVTLR--TEAGLAAISAIKKAVPEAIVGAGTVCTADDFQKAIDAGAQFIVSPGLTPELIEKAKQ 104 (217)
T ss_dssp TCCEEEEETT--STTHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHH
T ss_pred CCCEEEEeCC--CccHHHHHHHHHHHCCCCeEeeccccCHHHHHHHHHcCCCEEEeCCCcHHHHHHHHH
Confidence 3454444433 346778887776543335555555567889999999999776665566655544443
No 240
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=42.69 E-value=35 Score=33.57 Aligned_cols=83 Identities=14% Similarity=0.077 Sum_probs=51.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC---CC-CC-CCHHHHHHHHhccCCCcEE--EEecCCChHHHHHHHhcCCceEEeCCC
Q 006057 46 QAITALKLLRENKNKFDLVISDV---HM-PD-MDGFKLLELVGLEMDLPVI--MLSGNGDPKLVMKGITHGACDYLLKPV 118 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv---~M-Pd-mDG~eLLe~Ir~~~dIPVI--ILSA~~d~e~v~kAl~aGA~DYLlKPv 118 (663)
+..++++.+.+. ..|+|=+|+ +. |. ..|+++++.++...++|+. +|+.+ ...++..+.++||+.+..-..
T Consensus 18 ~l~~~i~~~~~~--Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e 94 (230)
T 1tqj_A 18 RLGEEIKAVDEA--GADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVE 94 (230)
T ss_dssp GHHHHHHHHHHT--TCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHc--CCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcc
Confidence 445556655543 356555554 22 22 2367899999876667766 67743 345788899999999877665
Q ss_pred --CHHHHHHHHHHHH
Q 006057 119 --RIEELKNIWQHVV 131 (663)
Q Consensus 119 --s~eeL~~~~q~Vl 131 (663)
..+++...++.+.
T Consensus 95 ~~~~~~~~~~~~~i~ 109 (230)
T 1tqj_A 95 HNASPHLHRTLCQIR 109 (230)
T ss_dssp TTTCTTHHHHHHHHH
T ss_pred cccchhHHHHHHHHH
Confidence 4445555555543
No 241
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=42.65 E-value=29 Score=35.47 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=48.2
Q ss_pred CcEEEEEeCC-----HHHHHHHHHHHHhCC-CEEEEECCHH-----HHHHHHHhcCCCceEEEEeCCCCCCCHHHH---H
Q 006057 14 GLRVLAVDDD-----PTCLLLLETLLRRCQ-YHVTTTSQAI-----TALKLLRENKNKFDLVISDVHMPDMDGFKL---L 79 (663)
Q Consensus 14 glRVLIVDDD-----~~~r~iL~~lL~~~g-y~V~tasdg~-----EALelLre~k~~pDLVIlDv~MPdmDG~eL---L 79 (663)
.+|||||.-. +.....|+++|++.+ |+|+.+.+.. +.+ .+.-..+|+||++......+.-.. .
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f---~~~L~~~D~vV~~~~~~~l~~~~~~~l~ 80 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGF---VLDFSPYQLVVLDYNGDSWPEETNRRFL 80 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTC---CCCCTTCSEEEECCCSSCCCHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHH---hhhhhcCCEEEEeCCCCcCCHHHHHHHH
Confidence 4799999752 566788999999888 9998886531 222 112246999998886554443222 1
Q ss_pred HHHhccCCCcEEEEe
Q 006057 80 ELVGLEMDLPVIMLS 94 (663)
Q Consensus 80 e~Ir~~~dIPVIILS 94 (663)
+.++ ....+|++=
T Consensus 81 ~yV~--~Ggglv~~H 93 (281)
T 4e5v_A 81 EYVQ--NGGGVVIYH 93 (281)
T ss_dssp HHHH--TTCEEEEEG
T ss_pred HHHH--cCCCEEEEe
Confidence 2333 356777663
No 242
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=42.51 E-value=75 Score=33.16 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=56.2
Q ss_pred EEEEeCCHHHHHHHHHHH----HhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 17 VLAVDDDPTCLLLLETLL----RRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL----~~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
|||=|++-...-.+...+ +... ...+.+.+.+|+.+.+.. .+|+|++|-.-| -++-+.++.-..-..
T Consensus 181 vLIKdNHi~~~G~i~~Av~~ar~~~p~~kIeVEv~tl~e~~eAl~a---GaDiImLDn~s~----~~l~~av~~~~~~v~ 253 (300)
T 3l0g_A 181 VLIKDNHIASCGSITLAIQRLRKNLKNEYIAIECDNISQVEESLSN---NVDMILLDNMSI----SEIKKAVDIVNGKSV 253 (300)
T ss_dssp EEECHHHHHHHSCHHHHHHHHHHHSSSCCEEEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTSSE
T ss_pred EEEcHhHHHHhCCHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHc---CCCEEEECCCCH----HHHHHHHHhhcCceE
Confidence 666666544332233333 2222 234578899999999875 489999996333 233333322222356
Q ss_pred EEEecCCChHHHHHHHhcCCceEE
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYL 114 (663)
|..|+.-..+.+....+.|++.+-
T Consensus 254 leaSGGIt~~~i~~~A~tGVD~Is 277 (300)
T 3l0g_A 254 LEVSGCVNIRNVRNIALTGVDYIS 277 (300)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 678888888888888889987654
No 243
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=42.49 E-value=83 Score=33.12 Aligned_cols=87 Identities=17% Similarity=0.052 Sum_probs=59.3
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEecCC
Q 006057 27 LLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE--MDLPVIMLSGNG 97 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~~--~dIPVIILSA~~ 97 (663)
.+.++.+-+..+..|. .+.+.++|..++.. .+|.|.+.-+-. ...-++++..++.. .++|||.-.+-.
T Consensus 214 ~~~i~~l~~~~~~pv~vK~~~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~~~ipvia~GGI~ 290 (370)
T 1gox_A 214 WKDVAWLQTITSLPILVKGVITAEDARLAVQH---GAAGIIVSNHGARQLDYVPATIMALEEVVKAAQGRIPVFLDGGVR 290 (370)
T ss_dssp HHHHHHHHHHCCSCEEEECCCSHHHHHHHHHT---TCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTTTSSCEEEESSCC
T ss_pred HHHHHHHHHHhCCCEEEEecCCHHHHHHHHHc---CCCEEEECCCCCccCCCcccHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 3456666666665544 35677787766653 589888854321 12346666666543 279999999988
Q ss_pred ChHHHHHHHhcCCceEEeC
Q 006057 98 DPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 98 d~e~v~kAl~aGA~DYLlK 116 (663)
....+.+++.+||+...+-
T Consensus 291 ~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 291 RGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp SHHHHHHHHHHTCSEEEEC
T ss_pred CHHHHHHHHHcCCCEEeec
Confidence 9999999999999887554
No 244
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=42.22 E-value=85 Score=32.64 Aligned_cols=66 Identities=14% Similarity=-0.026 Sum_probs=45.5
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE
Q 006057 41 VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 41 V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
.+.+.+.+++.+.+.. .+|+|.+|- ++--++-+.++....-..|..|+.-..+.+.+..+.|++.+
T Consensus 213 eVEvdtlde~~eAl~a---GaD~I~LDn----~~~~~l~~av~~i~~~v~ieaSGGI~~~~i~~~a~tGVD~i 278 (298)
T 3gnn_A 213 QIEVETLDQLRTALAH---GARSVLLDN----FTLDMMRDAVRVTEGRAVLEVSGGVNFDTVRAIAETGVDRI 278 (298)
T ss_dssp EEEESSHHHHHHHHHT---TCEEEEEES----CCHHHHHHHHHHHTTSEEEEEESSCSTTTHHHHHHTTCSEE
T ss_pred EEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCeEEEEcCCCHHHHHHHHHcCCCEE
Confidence 3468888998888874 589999997 33333333333222234566788888888888889999665
No 245
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Probab=42.13 E-value=1.7e+02 Score=29.70 Aligned_cols=106 Identities=19% Similarity=0.222 Sum_probs=60.2
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhCCC--EEEEEC-----CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006057 14 GLRVLAVDDD----PTCLLLLETLLRRCQY--HVTTTS-----QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 14 glRVLIVDDD----~~~r~iL~~lL~~~gy--~V~tas-----dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
.++++||.+. +.....++.+.+..+. .|.... +.++..+++.. .|++++--. .+.-|..+++.+
T Consensus 262 ~~~l~i~G~g~~~~~~~~~~l~~~~~~~~~~~~V~~~G~~~~~~~~~~~~~~~~----ad~~v~ps~-~E~~~~~~lEAm 336 (416)
T 2x6q_A 262 GVQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKVLTNLIGVHAREVNAFQRA----SDVILQMSI-REGFGLTVTEAM 336 (416)
T ss_dssp TCEEEEEECCCTTCHHHHHHHHHHHHHHTTCTTEEEEEGGGTCCHHHHHHHHHH----CSEEEECCS-SCSSCHHHHHHH
T ss_pred CeEEEEEecCcccchhHHHHHHHHHHHhCCCCcEEEecccCCCCHHHHHHHHHh----CCEEEECCC-cCCCccHHHHHH
Confidence 3566666554 2334444444444332 233322 12344444442 466665332 233455666655
Q ss_pred hccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 83 GLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 83 r~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
. ..+|||... .....+.+..|..+++.. +.++|..++..++.
T Consensus 337 a--~G~PvI~~~----~~g~~e~i~~~~~g~l~~--d~~~la~~i~~ll~ 378 (416)
T 2x6q_A 337 W--KGKPVIGRA----VGGIKFQIVDGETGFLVR--DANEAVEVVLYLLK 378 (416)
T ss_dssp H--TTCCEEEES----CHHHHHHCCBTTTEEEES--SHHHHHHHHHHHHH
T ss_pred H--cCCCEEEcc----CCCChhheecCCCeEEEC--CHHHHHHHHHHHHh
Confidence 3 468988632 244566677788999997 99999999988875
No 246
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=41.50 E-value=1.2e+02 Score=31.55 Aligned_cols=91 Identities=12% Similarity=0.162 Sum_probs=59.2
Q ss_pred CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhccCCCcEEEEecCCCh-------------HHH
Q 006057 38 QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDM-DGFKLLELVGLEMDLPVIMLSGNGDP-------------KLV 102 (663)
Q Consensus 38 gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdm-DG~eLLe~Ir~~~dIPVIILSA~~d~-------------e~v 102 (663)
.+.+. .+.+.++|+...+...+.+.|. .++..++. .++.+++.+++..++||.+|--.... +.+
T Consensus 39 ~~~lEvc~~s~~~a~~A~~gGAdRIELc-~~l~~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI 117 (287)
T 3iwp_A 39 GFLMEVCVDSVESAVNAERGGADRIELC-SGLSEGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADI 117 (287)
T ss_dssp CSEEEEEESSHHHHHHHHHHTCSEEEEC-BCGGGTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHhCCCEEEEC-CCCCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHH
Confidence 35555 4677888888887654333333 22333443 36788888877778999887654333 467
Q ss_pred HHHHhcCCceEEeCC------CCHHHHHHHHHH
Q 006057 103 MKGITHGACDYLLKP------VRIEELKNIWQH 129 (663)
Q Consensus 103 ~kAl~aGA~DYLlKP------vs~eeL~~~~q~ 129 (663)
..+.++||+++..-- ++.+.++..+..
T Consensus 118 ~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~ 150 (287)
T 3iwp_A 118 RLAKLYGADGLVFGALTEDGHIDKELCMSLMAI 150 (287)
T ss_dssp HHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHH
T ss_pred HHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHH
Confidence 888999999987763 555566655553
No 247
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=41.44 E-value=1.5e+02 Score=28.40 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=52.6
Q ss_pred HHHHHHHHHhcCCCceEE-EEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc---CCceEEe----
Q 006057 47 AITALKLLRENKNKFDLV-ISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH---GACDYLL---- 115 (663)
Q Consensus 47 g~EALelLre~k~~pDLV-IlDv~MPdm---DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~a---GA~DYLl---- 115 (663)
..+.++.+.+. .++.| +.++.-.+. -.+++++.++....+|||.-.+-...+.+.++++. ||+.++.
T Consensus 151 ~~e~~~~~~~~--G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al 228 (244)
T 2y88_A 151 LWDVLERLDSE--GCSRFVVTDITKDGTLGGPNLDLLAGVADRTDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKAL 228 (244)
T ss_dssp HHHHHHHHHHT--TCCCEEEEETTTTTTTSCCCHHHHHHHHTTCSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHH
T ss_pred HHHHHHHHHhC--CCCEEEEEecCCccccCCCCHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHH
Confidence 34554444442 46744 566654322 24678888877678999998888888999999998 9988754
Q ss_pred --CCCCHHHHHHH
Q 006057 116 --KPVRIEELKNI 126 (663)
Q Consensus 116 --KPvs~eeL~~~ 126 (663)
.|....+++..
T Consensus 229 ~~~~~~~~~~~~~ 241 (244)
T 2y88_A 229 YARRFTLPQALAA 241 (244)
T ss_dssp HTTSSCHHHHHHH
T ss_pred HCCCcCHHHHHHH
Confidence 46666665543
No 248
>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2
Probab=41.40 E-value=30 Score=32.91 Aligned_cols=68 Identities=15% Similarity=0.128 Sum_probs=41.3
Q ss_pred CceEEEEeCCCCCCCHH-------HHHHHHhcc-----CCCcEEEEecCCChHHHHHHHhcCCceEEe-----CCCCHHH
Q 006057 60 KFDLVISDVHMPDMDGF-------KLLELVGLE-----MDLPVIMLSGNGDPKLVMKGITHGACDYLL-----KPVRIEE 122 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~-------eLLe~Ir~~-----~dIPVIILSA~~d~e~v~kAl~aGA~DYLl-----KPvs~ee 122 (663)
..|.|+++...|+.+|. +.++.++.. .++||++.-+-. .+.+.+++++||+.++. +.-++.+
T Consensus 131 ~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~~d~~~ 209 (220)
T 2fli_A 131 LVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKASDLVS 209 (220)
T ss_dssp TCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTSSCHHH
T ss_pred hCCEEEEEEECCCCcccccCHHHHHHHHHHHHHHHhcCCCceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCCCCHHH
Confidence 47899888777765552 334444321 267776654444 66777788899998754 4445554
Q ss_pred HHHHHH
Q 006057 123 LKNIWQ 128 (663)
Q Consensus 123 L~~~~q 128 (663)
-...++
T Consensus 210 a~~~~~ 215 (220)
T 2fli_A 210 QVQTLR 215 (220)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 249
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=41.15 E-value=26 Score=33.14 Aligned_cols=82 Identities=11% Similarity=0.043 Sum_probs=46.2
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEE--EecCCChHHHHHHHhcCCceEEeCCCCH-
Q 006057 47 AITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGLE-MDLPVIM--LSGNGDPKLVMKGITHGACDYLLKPVRI- 120 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~MPd--mDG~eLLe~Ir~~-~dIPVII--LSA~~d~e~v~kAl~aGA~DYLlKPvs~- 120 (663)
.+++++.++.-...+|+|-+-+ |- ..|+++++.+++. +++||.+ +..+.....+..+.++||+.+++-....
T Consensus 12 ~~~~~~~~~~~~~~~diie~G~--p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~ 89 (211)
T 3f4w_A 12 LPEAMVFMDKVVDDVDIIEVGT--PFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDV 89 (211)
T ss_dssp HHHHHHHHHHHGGGCSEEEECH--HHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCH
T ss_pred HHHHHHHHHHhhcCccEEEeCc--HHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCCh
Confidence 4444444443212355443322 32 3467888888765 5788753 3333333348899999999888865543
Q ss_pred HHHHHHHHHH
Q 006057 121 EELKNIWQHV 130 (663)
Q Consensus 121 eeL~~~~q~V 130 (663)
+.+...++.+
T Consensus 90 ~~~~~~~~~~ 99 (211)
T 3f4w_A 90 LTIQSCIRAA 99 (211)
T ss_dssp HHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 4444444443
No 250
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=41.02 E-value=85 Score=30.90 Aligned_cols=71 Identities=17% Similarity=0.249 Sum_probs=44.9
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHH
Q 006057 60 KFDLVISDVHMPDMDG-------FKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL-----KPVRIEELKNI 126 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG-------~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLl-----KPvs~eeL~~~ 126 (663)
.+|+|++...-|+..| ++-+++++.. .+++|. +.+--..+.+..+.++||+.++. +.-++.+-...
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~-VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~ 212 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIE-VDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINL 212 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEE-EESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHH
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEE-EeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHH
Confidence 4788888766787766 3334555543 345554 45545678899999999998765 33355554444
Q ss_pred HHHHH
Q 006057 127 WQHVV 131 (663)
Q Consensus 127 ~q~Vl 131 (663)
|+..+
T Consensus 213 l~~~~ 217 (228)
T 3ovp_A 213 LRNVC 217 (228)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54444
No 251
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=40.87 E-value=41 Score=34.95 Aligned_cols=60 Identities=18% Similarity=0.119 Sum_probs=44.8
Q ss_pred HHHHHHHHhccCCCcEEEEe--cCCChHHHHHHHhcCCceEEe-----CCCCHHHHHHHHHHHHHhh
Q 006057 75 GFKLLELVGLEMDLPVIMLS--GNGDPKLVMKGITHGACDYLL-----KPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILS--A~~d~e~v~kAl~aGA~DYLl-----KPvs~eeL~~~~q~Vlrr~ 134 (663)
.+++++.+++...+|||++. .-...+.+.++++.|+++.++ +--++......+..++...
T Consensus 186 d~elI~~Ike~~~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP~~~Akafv~Av~~~ 252 (291)
T 3o07_A 186 PVSLLKDVLEKGKLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNPVRLATAVVEATTHF 252 (291)
T ss_dssp CHHHHHHHHHHTSCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHccCCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCHHHHHHHHHHHHHhc
Confidence 36778888777889998873 334688999999999999865 4455777777777766543
No 252
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=40.81 E-value=80 Score=33.65 Aligned_cols=114 Identities=10% Similarity=0.035 Sum_probs=62.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHh---cCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRE---NKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre---~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
.+||.||---..-+..+..+...-+++++ .+....+..+.+.+ ....++.-+.+- .+.|- -+.+. .+++-
T Consensus 20 ~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~--~~~~~---~~ll~-~~~vD 93 (444)
T 2ixa_A 20 KVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGN--GNDDY---KNMLK-DKNID 93 (444)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECS--STTTH---HHHTT-CTTCC
T ss_pred CceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceecc--CCCCH---HHHhc-CCCCC
Confidence 47999999876666656554443467765 44433333332221 101112222210 11121 22232 34455
Q ss_pred EEEEec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 90 VIMLSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 90 VIILSA--~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
+|+++. ....+.+.+|+++|..-|+-||+ +.++...+++.+-+.
T Consensus 94 ~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~ 141 (444)
T 2ixa_A 94 AVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQT 141 (444)
T ss_dssp EEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHHH
T ss_pred EEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 555543 33467888999999999999995 578887777765443
No 253
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=40.73 E-value=1.8e+02 Score=29.61 Aligned_cols=108 Identities=15% Similarity=0.076 Sum_probs=63.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~-~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
..+||.||.--..-...+..+.+. .+++++ .+....+..+.+.+. +.+... .|--++++ ..++-+
T Consensus 12 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~---~~~~~~------~~~~~ll~----~~~~D~ 78 (354)
T 3q2i_A 12 RKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER---TGARGH------ASLTDMLA----QTDADI 78 (354)
T ss_dssp SCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---HCCEEE------SCHHHHHH----HCCCSE
T ss_pred CcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH---cCCcee------CCHHHHhc----CCCCCE
Confidence 357999998876666666555554 477766 444333333333321 222221 12223332 234555
Q ss_pred EEEec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 91 IMLSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 91 IILSA--~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
|+++. ....+.+.+|+++|..-|+-||+ +.++...+++.+-+.
T Consensus 79 V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~ 125 (354)
T 3q2i_A 79 VILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKA 125 (354)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred EEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHh
Confidence 55543 33456788999999999999995 677887777665543
No 254
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=40.36 E-value=81 Score=32.42 Aligned_cols=94 Identities=12% Similarity=-0.000 Sum_probs=57.1
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCC--CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhc-cCCCc
Q 006057 17 VLAVDDDPTC----LLLLETLLRRCQ--YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGL-EMDLP 89 (663)
Q Consensus 17 VLIVDDD~~~----r~iL~~lL~~~g--y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~-~~dIP 89 (663)
|||-|++-.. ...++.+-+..+ ...+.+.+.+++.+.++. ..|+|++|-.-|+ +-.+..+.++. .+.+
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~a---GaD~I~LDn~~~~-~~~~~v~~l~~~~~~v- 242 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPE---KPELILLDNFAVW-QTQTAVQRRDSRAPTV- 242 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGG---CCSEEEEETCCHH-HHHHHHHHHHHHCTTC-
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHc---CCCEEEECCCCHH-HHHHHHHHhhccCCCe-
Confidence 6776665433 223333333333 334577788888888864 5899999984331 11123333432 2233
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEe
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.|..|+--..+.+.+..+.|++.|.+
T Consensus 243 ~ieaSGGIt~~~i~~~a~tGVD~isv 268 (284)
T 1qpo_A 243 MLESSGGLSLQTAATYAETGVDYLAV 268 (284)
T ss_dssp EEEEESSCCTTTHHHHHHTTCSEEEC
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEE
Confidence 55677777888888999999887753
No 255
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=40.34 E-value=50 Score=32.68 Aligned_cols=42 Identities=21% Similarity=0.155 Sum_probs=35.0
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
.++++++++...++||++-.+-.+.+.+.+++.+||+.+++-
T Consensus 189 ~~~~i~~v~~~~~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVTNKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhcCCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 456777787667899999888888899999999999998764
No 256
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=40.32 E-value=1.1e+02 Score=31.69 Aligned_cols=91 Identities=12% Similarity=0.007 Sum_probs=54.2
Q ss_pred EEEEeCCHHHHHHHHHHHH---hCC---CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 17 VLAVDDDPTCLLLLETLLR---RCQ---YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 17 VLIVDDD~~~r~iL~~lL~---~~g---y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
|||-|++-...-.+...++ +.. -..+.+.+.+|+.+.++. .+|+|.+|-.-| -++-+.++.-..-..
T Consensus 172 vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv~tl~ea~eAl~a---GaD~I~LDn~~~----~~l~~av~~~~~~v~ 244 (287)
T 3tqv_A 172 YLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEVTNLDELNQAIAA---KADIVMLDNFSG----EDIDIAVSIARGKVA 244 (287)
T ss_dssp EEECTTTC----CHHHHHHHHHHHCTTSCEEEEESSHHHHHHHHHT---TCSEEEEESCCH----HHHHHHHHHHTTTCE
T ss_pred EEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEEcCCCH----HHHHHHHHhhcCCce
Confidence 7766666433322333322 111 234478899999988875 589999997433 233223322222345
Q ss_pred EEEecCCChHHHHHHHhcCCceEE
Q 006057 91 IMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 91 IILSA~~d~e~v~kAl~aGA~DYL 114 (663)
|..|+.-..+.+....+.|++.+-
T Consensus 245 ieaSGGIt~~~i~~~a~tGVD~Is 268 (287)
T 3tqv_A 245 LEVSGNIDRNSIVAIAKTGVDFIS 268 (287)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEE
T ss_pred EEEECCCCHHHHHHHHHcCCCEEE
Confidence 667888888888888899987764
No 257
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=40.31 E-value=52 Score=34.05 Aligned_cols=111 Identities=14% Similarity=0.051 Sum_probs=55.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE----------EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH----------VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~----------V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
..+++||-+.+.....|+++++..+.. |.......+...++. ..|++++--..-+.-|..+++.+
T Consensus 225 ~~~lvivG~g~~~~~~l~~~~~~~gl~~~~~~~~~~~v~~~~~~~dl~~~y~----~aDv~vl~ss~~e~gg~~~lEAm- 299 (374)
T 2xci_A 225 SLKLILVPRHIENAKIFEKKARDFGFKTSFFENLEGDVILVDRFGILKELYP----VGKIAIVGGTFVNIGGHNLLEPT- 299 (374)
T ss_dssp TCEEEEEESSGGGHHHHHHHHHHTTCCEEETTCCCSSEEECCSSSCHHHHGG----GEEEEEECSSSSSSCCCCCHHHH-
T ss_pred CcEEEEECCCHHHHHHHHHHHHHCCCceEEecCCCCcEEEECCHHHHHHHHH----hCCEEEECCcccCCCCcCHHHHH-
Confidence 356666666654434556666555432 222221223333332 35776652111111123344444
Q ss_pred ccCCCcEEEEecCCChHH-HHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 84 LEMDLPVIMLSGNGDPKL-VMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 84 ~~~dIPVIILSA~~d~e~-v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
...+|||.-+....... +...... +++..+-+.++|..++..++..
T Consensus 300 -A~G~PVI~~~~~~~~~e~~~~~~~~---G~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 300 -CWGIPVIYGPYTHKVNDLKEFLEKE---GAGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp -TTTCCEEECSCCTTSHHHHHHHHHT---TCEEECCSHHHHHHHHHHHHHS
T ss_pred -HhCCCEEECCCccChHHHHHHHHHC---CCEEEeCCHHHHHHHHHHHHhH
Confidence 35689985222233233 3322334 4667777999999999998863
No 258
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=40.26 E-value=1.1e+02 Score=29.46 Aligned_cols=78 Identities=17% Similarity=0.340 Sum_probs=53.9
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCC----CCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc-----C-CceEE
Q 006057 46 QAITALKLLRENKNKFD-LVISDVH----MPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH-----G-ACDYL 114 (663)
Q Consensus 46 dg~EALelLre~k~~pD-LVIlDv~----MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~a-----G-A~DYL 114 (663)
+..+....+.+. .++ +++.++. +.+. .+++++.++....+|||...+-...+.+.++++. | |++.+
T Consensus 145 ~~~e~~~~~~~~--G~~~i~~t~~~~~g~~~g~-~~~~i~~l~~~~~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~ 221 (241)
T 1qo2_A 145 DPVSLLKRLKEY--GLEEIVHTEIEKDGTLQEH-DFSLTKKIAIEAEVKVLAAGGISSENSLKTAQKVHTETNGLLKGVI 221 (241)
T ss_dssp CHHHHHHHHHTT--TCCEEEEEETTHHHHTCCC-CHHHHHHHHHHHTCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEE
T ss_pred CHHHHHHHHHhC--CCCEEEEEeecccccCCcC-CHHHHHHHHHhcCCcEEEECCCCCHHHHHHHHhcccccCCeEeEEE
Confidence 455544444432 467 5555543 2222 3788888876668999999888888999999988 9 88865
Q ss_pred e------CCCCHHHHHHH
Q 006057 115 L------KPVRIEELKNI 126 (663)
Q Consensus 115 l------KPvs~eeL~~~ 126 (663)
+ .+++.++++..
T Consensus 222 vgsal~~~~~~~~~~~~~ 239 (241)
T 1qo2_A 222 VGRAFLEGILTVEVMKRY 239 (241)
T ss_dssp ECHHHHTTSSCHHHHHHH
T ss_pred eeHHHHcCCCCHHHHHHH
Confidence 4 57887777654
No 259
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=39.82 E-value=32 Score=35.15 Aligned_cols=36 Identities=17% Similarity=0.395 Sum_probs=28.0
Q ss_pred ChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 98 DPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 98 d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
..+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 80 H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 117 (337)
T 3ip3_A 80 NGKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQKV 117 (337)
T ss_dssp HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 346788999999999999995 567887777765543
No 260
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=39.72 E-value=45 Score=25.02 Aligned_cols=45 Identities=27% Similarity=0.312 Sum_probs=35.3
Q ss_pred ceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhh
Q 006057 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 249 (663)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQk 249 (663)
+-.||+|-...++++|..+|..+ =+.|.+.| ++-|..++..|-++
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~~--~~Rt~~qcr~Rw~~ 47 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDD--WKVIANYL--PNRTDVQCQHRWQK 47 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSC--HHHHHHTS--TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHc--CCCCHHHHHHHHHH
Confidence 45799999999999999999633 25677776 68899998885443
No 261
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=39.67 E-value=2.1e+02 Score=28.72 Aligned_cols=105 Identities=10% Similarity=0.106 Sum_probs=59.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
+||.||.--..-...+..+....+++++ .+....+..+.+.+. ....-+.. |--+ .+ ..++-+|++
T Consensus 2 ~~vgiiG~G~~g~~~~~~l~~~~~~~~~~v~d~~~~~~~~~~~~-~~~~~~~~-------~~~~---~l--~~~~D~V~i 68 (325)
T 2ho3_A 2 LKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASR-YQNIQLFD-------QLEV---FF--KSSFDLVYI 68 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTTSEEEEEEECSSHHHHHHHGGG-SSSCEEES-------CHHH---HH--TSSCSEEEE
T ss_pred eEEEEEeCCHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHH-cCCCeEeC-------CHHH---Hh--CCCCCEEEE
Confidence 5888888776655555554443466665 444333333333322 11111111 2112 23 234555555
Q ss_pred ecC--CChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 006057 94 SGN--GDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (663)
Q Consensus 94 SA~--~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlr 132 (663)
+.. ...+.+.+|+++|..-|+-||+ +.++...+++.+-+
T Consensus 69 ~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 111 (325)
T 2ho3_A 69 ASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEK 111 (325)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred eCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHH
Confidence 443 3457788999999999999996 67777777665543
No 262
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=39.07 E-value=17 Score=34.51 Aligned_cols=76 Identities=11% Similarity=0.167 Sum_probs=44.4
Q ss_pred cE-EEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe-C-CCCCC---CH--HHHHHHHhccC
Q 006057 15 LR-VLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISD-V-HMPDM---DG--FKLLELVGLEM 86 (663)
Q Consensus 15 lR-VLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlD-v-~MPdm---DG--~eLLe~Ir~~~ 86 (663)
|| |+|||....+...+.++|++.|+.+..+...+..++.+... .+|.||+- = ..+.. .+ .++++.+ ..
T Consensus 1 m~mi~iid~~~s~~~~~~~~l~~~G~~~~v~~~~~~~~~~~~~~--~~dglil~gG~~~~~~~~~~~~~~~~i~~~--~~ 76 (195)
T 1qdl_B 1 MDLTLIIDNYDSFVYNIAQIVGELGSYPIVIRNDEISIKGIERI--DPDRLIISPGPGTPEKREDIGVSLDVIKYL--GK 76 (195)
T ss_dssp CCEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTTSCHHHHHHH--CCSEEEECCCSSCTTSHHHHTTHHHHHHHH--TT
T ss_pred CCEEEEEECCCchHHHHHHHHHhCCCEEEEEeCCCCCHHHHhhC--CCCEEEECCCCCChhhhhhhhHHHHHHHHh--cC
Confidence 46 99999776656678889999998877665432223333322 47877771 1 11221 11 2334432 34
Q ss_pred CCcEEEEe
Q 006057 87 DLPVIMLS 94 (663)
Q Consensus 87 dIPVIILS 94 (663)
.+||+-+.
T Consensus 77 ~~PvLGIC 84 (195)
T 1qdl_B 77 RTPILGVC 84 (195)
T ss_dssp TSCEEEET
T ss_pred CCcEEEEe
Confidence 68888765
No 263
>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*
Probab=39.07 E-value=96 Score=32.89 Aligned_cols=87 Identities=16% Similarity=0.051 Sum_probs=59.9
Q ss_pred HHHHHHHHHhCCCEE--EEECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhc--cCCCcEEEEecCC
Q 006057 27 LLLLETLLRRCQYHV--TTTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGL--EMDLPVIMLSGNG 97 (663)
Q Consensus 27 r~iL~~lL~~~gy~V--~tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~--~~dIPVIILSA~~ 97 (663)
.+.++.+-+..+..| -.+.+.++|..+... .+|.|++.-+-. ....++++..+.. ...+|||+-.+-.
T Consensus 206 w~~i~~lr~~~~~PvivK~v~~~e~A~~a~~~---GaD~I~vsn~GG~~~d~~~~~~~~L~~i~~av~~~ipVia~GGI~ 282 (352)
T 3sgz_A 206 WNDLSLLQSITRLPIILKGILTKEDAELAMKH---NVQGIVVSNHGGRQLDEVSASIDALREVVAAVKGKIEVYMDGGVR 282 (352)
T ss_dssp HHHHHHHHHHCCSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSSCSSCCHHHHHHHHHHHHTTSSEEEEESSCC
T ss_pred HHHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEeCCCCCccCCCccHHHHHHHHHHHhCCCCeEEEECCCC
Confidence 344555555555443 356788888777654 589998854321 1245677766643 2379999999999
Q ss_pred ChHHHHHHHhcCCceEEeC
Q 006057 98 DPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 98 d~e~v~kAl~aGA~DYLlK 116 (663)
....+.+++.+||+...+-
T Consensus 283 ~g~Dv~kaLalGA~aV~iG 301 (352)
T 3sgz_A 283 TGTDVLKALALGARCIFLG 301 (352)
T ss_dssp SHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHHcCCCEEEEC
Confidence 9999999999999987553
No 264
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=38.54 E-value=2.5e+02 Score=27.78 Aligned_cols=97 Identities=12% Similarity=0.077 Sum_probs=58.4
Q ss_pred HHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHHH
Q 006057 30 LETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMKG 105 (663)
Q Consensus 30 L~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir--~~~dIPVIILSA~~d~e~v~kA 105 (663)
+++.|..-.. .+...-...+.++.+.. ..+|.|++|++-...+--++...++ .....++++=+...+...+..+
T Consensus 10 ~k~~l~~g~~~~~~~l~v~~p~~~e~a~~--~gaD~v~lDlEd~p~~~~~a~~~~~~~~~~~~~~~VRv~~~~~~~i~~~ 87 (256)
T 1dxe_A 10 FKAALAAKQVQIGCWSALSNPISTEVLGL--AGFDWLVLDGEHAPNDISTFIPQLMALKGSASAPVVRVPTNEPVIIKRL 87 (256)
T ss_dssp HHHHHHTTCCEEEEEECSCSHHHHHHHTT--SCCSEEEEESSSSSCCHHHHHHHHHHTTTCSSEEEEECSSSCHHHHHHH
T ss_pred HHHHHHCCCCeEEEEEeCCCHHHHHHHHh--CCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCcEEEECCCCCHHHHHHH
Confidence 5555654222 22222233344444443 3699999999665333333333332 2245778888888888889999
Q ss_pred HhcCCceEEe-CCCCHHHHHHHHH
Q 006057 106 ITHGACDYLL-KPVRIEELKNIWQ 128 (663)
Q Consensus 106 l~aGA~DYLl-KPvs~eeL~~~~q 128 (663)
+..|+++.++ |--+.++++.+++
T Consensus 88 l~~g~~gI~~P~V~s~~ev~~~~~ 111 (256)
T 1dxe_A 88 LDIGFYNFLIPFVETKEEAELAVA 111 (256)
T ss_dssp HHTTCCEEEESCCCSHHHHHHHHH
T ss_pred HhcCCceeeecCcCCHHHHHHHHH
Confidence 9999988544 4456888865543
No 265
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=37.97 E-value=61 Score=26.34 Aligned_cols=55 Identities=18% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCC-CCCCHHHHHHhhhhhHhhhhhhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNV-EKLTRENVASHLQKYRLYLKRISC 259 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v-~~LT~~~VaSHLQkyRlyl~rl~~ 259 (663)
..|-.||.|--..-++.|+.+|. + =+.|+..+.. ++-|.-+++. |||...++.++
T Consensus 6 ~~r~~WT~EE~~~L~~gV~k~G~-~--W~~I~~~y~f~~~RT~VdLKd---k~r~L~k~~~~ 61 (62)
T 1x58_A 6 SGRKDFTKEEVNYLFHGVKTMGN-H--WNSILWSFPFQKGRRAVDLAH---KYHRLISGPSS 61 (62)
T ss_dssp CCSSSCCHHHHHHHHHHHHHHCS-C--HHHHHHHSCCCTTCCHHHHHH---HHHHHHTCSSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHhH-h--HHHHHHhCCCccCcccchHHH---HHHHHHhcccC
Confidence 46778999999999999999996 3 3688864433 7889999998 99988887543
No 266
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=37.47 E-value=2.1e+02 Score=29.48 Aligned_cols=91 Identities=12% Similarity=0.001 Sum_probs=58.0
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCc
Q 006057 17 VLAVDDDPTC----LLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLP 89 (663)
Q Consensus 17 VLIVDDD~~~----r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIP 89 (663)
|+|.|.+-.. ...++.+-+..+. ....+.+.+++.+.+.. .+|+|.+|- ++--++.+.++.. ..++
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~a---GaD~I~ld~----~~~e~l~~~v~~~~~~~~ 254 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALKA---GADIIMLDN----FNTDQMREAVKRVNGQAR 254 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHHT---TCSEEEESS----CCHHHHHHHHHTTCTTCC
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHc---CCCEEEECC----CCHHHHHHHHHHhCCCCe
Confidence 6666665443 4555555555554 44577888888877754 589999986 4433333333322 2455
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEe
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
|. .++--..+.+....+.|++.+-+
T Consensus 255 I~-ASGGIt~~~i~~~a~~GvD~isv 279 (296)
T 1qap_A 255 LE-VSGNVTAETLREFAETGVDFISV 279 (296)
T ss_dssp EE-ECCCSCHHHHHHHHHTTCSEEEC
T ss_pred EE-EECCCCHHHHHHHHHcCCCEEEE
Confidence 54 56666888999999999966543
No 267
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=37.40 E-value=50 Score=28.61 Aligned_cols=46 Identities=24% Similarity=0.351 Sum_probs=36.9
Q ss_pred ceeeehhhhHHHHHHHHHhcCCCcch---HHHHhhcCCCCCCHHHHHHhhhhh
Q 006057 201 RVVWSVELHRKFVAAVNQLGIDKAVP---KKILDLMNVEKLTRENVASHLQKY 250 (663)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dkA~p---k~Ile~m~v~~LT~~~VaSHLQky 250 (663)
+-.||.|-...|+.|+..+|.+ .| .+|-+.+ +|-|.++|..|..++
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~--~~~rW~~IA~~v--pGRT~~q~k~ry~~l 56 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKD--TPDRWANVARAV--EGRTPEEVKKHYEIL 56 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHS--TTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC--CCchHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 3469999999999999999854 23 3677776 799999999986653
No 268
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=37.38 E-value=1.9e+02 Score=25.71 Aligned_cols=68 Identities=19% Similarity=0.230 Sum_probs=44.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy--~V-~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
.+|..||-++...+..+..+...+. .+ ....+..+.+..+......+|+|++|.-.-..+.-++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5899999999998888888877654 23 35667777554433223479999998532233444555554
No 269
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=37.28 E-value=50 Score=29.30 Aligned_cols=57 Identities=19% Similarity=0.251 Sum_probs=44.7
Q ss_pred CCCCCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcC--CCCCCHHHHHHhhhhhHhhhhhh
Q 006057 196 TQKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMN--VEKLTRENVASHLQKYRLYLKRI 257 (663)
Q Consensus 196 ~~kk~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~--v~~LT~~~VaSHLQkyRlyl~rl 257 (663)
..++.|..||+|-....+++|+.+|.-+= +.|++.+. .++-|--+++. |||.++++-
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W--~~I~~~~~~~f~~RT~v~lKd---rWrnllk~~ 66 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTGRW--RDVKLCAFEDADHRTYVDLKD---KWKTLVHTA 66 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSSSH--HHHHSSSSSSTTCCCHHHHHH---HHHHHHHTT
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCCCh--HHHHHHhccccCCCCHHHHHH---HHHHHHhhc
Confidence 35677889999999999999999997442 46777552 37889999998 888888753
No 270
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}
Probab=37.01 E-value=1.4e+02 Score=28.25 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=42.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC---EEEEECCHHHHHHHHHhc------------C-CCceEEEEeCCC
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQY---HVTTTSQAITALKLLREN------------K-NKFDLVISDVHM 70 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy---~V~tasdg~EALelLre~------------k-~~pDLVIlDv~M 70 (663)
+|.+.+|..||-++...+..++.+...++ ......++.+.+..+... . ..||+|++|...
T Consensus 82 ~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~~~ 157 (239)
T 2hnk_A 82 LPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDADK 157 (239)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECSCG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeCCH
Confidence 34466999999999999999999887765 233566777765544321 1 369999999653
No 271
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=36.69 E-value=1.1e+02 Score=30.60 Aligned_cols=42 Identities=19% Similarity=0.216 Sum_probs=34.0
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
.+++++++...++||++=.+-...+.+.+++.+||+.+++--
T Consensus 194 ~~~i~~lr~~~~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 194 HHLIEKLKEYHAAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp HHHHHHHHHTTCCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhccCCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 578888877678998876666678899999999999987653
No 272
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=36.67 E-value=1.2e+02 Score=32.37 Aligned_cols=77 Identities=14% Similarity=0.032 Sum_probs=48.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCE---EE-EECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHH-hccCCC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYH---VT-TTSQAITALK-LLRENKNKFDLVISDVHMPDMDGFKLLELV-GLEMDL 88 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~---V~-tasdg~EALe-lLre~k~~pDLVIlDv~MPdmDG~eLLe~I-r~~~dI 88 (663)
-+|..||-++...+.+++-++..+.. +. ...|+.+.+. .+ ...||+|++|- ++. ..++++.. +.-..-
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~---~~~fD~V~lDP--~g~-~~~~l~~a~~~Lk~g 151 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW---GFGFDYVDLDP--FGT-PVPFIESVALSMKRG 151 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC---SSCEEEEEECC--SSC-CHHHHHHHHHHEEEE
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh---CCCCcEEEECC--CcC-HHHHHHHHHHHhCCC
Confidence 47999999999999999999987753 43 4566666543 22 34699999997 332 12355422 211112
Q ss_pred cEEEEecCC
Q 006057 89 PVIMLSGNG 97 (663)
Q Consensus 89 PVIILSA~~ 97 (663)
-+|++|...
T Consensus 152 Gll~~t~t~ 160 (392)
T 3axs_A 152 GILSLTATD 160 (392)
T ss_dssp EEEEEEECC
T ss_pred CEEEEEecc
Confidence 266676633
No 273
>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*
Probab=36.33 E-value=2.6e+02 Score=30.54 Aligned_cols=73 Identities=12% Similarity=-0.061 Sum_probs=48.5
Q ss_pred EEEECCHHHHHHHHHhcCCCceEEEEeCCC------C-----CCCHHHHHHHHhc---cC------CCcEEEEecCCChH
Q 006057 41 VTTTSQAITALKLLRENKNKFDLVISDVHM------P-----DMDGFKLLELVGL---EM------DLPVIMLSGNGDPK 100 (663)
Q Consensus 41 V~tasdg~EALelLre~k~~pDLVIlDv~M------P-----dmDG~eLLe~Ir~---~~------dIPVIILSA~~d~e 100 (663)
+..+.+.++|..++.. ..|+|.+-+.- . +..-+.++..+.. .. .+|||.=.+-....
T Consensus 289 ~G~V~t~~~a~~l~~a---Gad~I~Vg~~~g~~~~~r~~~~~g~p~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~ 365 (503)
T 1me8_A 289 AGNIVDGEGFRYLADA---GADFIKIGIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDY 365 (503)
T ss_dssp EEEECSHHHHHHHHHH---TCSEEEECSSCSTTCCSTTTTCCCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHH
T ss_pred eccccCHHHHHHHHHh---CCCeEEecccCCcCcccccccCCCCchHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHH
Confidence 3467888888887765 47888874321 0 1233444433321 11 68998877888889
Q ss_pred HHHHHHhcCCceEEeC
Q 006057 101 LVMKGITHGACDYLLK 116 (663)
Q Consensus 101 ~v~kAl~aGA~DYLlK 116 (663)
.+.+|+.+||+...+-
T Consensus 366 di~kAlalGA~~V~iG 381 (503)
T 1me8_A 366 HMTLALAMGADFIMLG 381 (503)
T ss_dssp HHHHHHHTTCSEEEES
T ss_pred HHHHHHHcCCCEEEEC
Confidence 9999999999987654
No 274
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=36.31 E-value=1e+02 Score=25.26 Aligned_cols=90 Identities=17% Similarity=0.219 Sum_probs=50.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCC-CEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQ-YHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~g-y~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
+++|+|+.- -.+-..+...|...| ++|+.+....+.++.+.. .....+..|+.- .-++.+.++ .+-+|+
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~--~~~~~~~~d~~~----~~~~~~~~~---~~d~vi 74 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR--MGVATKQVDAKD----EAGLAKALG---GFDAVI 74 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT--TTCEEEECCTTC----HHHHHHHTT---TCSEEE
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh--CCCcEEEecCCC----HHHHHHHHc---CCCEEE
Confidence 568999988 445555555666668 888876655555555543 246666666532 222323332 344555
Q ss_pred EecCC--ChHHHHHHHhcCCceE
Q 006057 93 LSGNG--DPKLVMKGITHGACDY 113 (663)
Q Consensus 93 LSA~~--d~e~v~kAl~aGA~DY 113 (663)
.+... ....+..+.+.|+.-|
T Consensus 75 ~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 75 SAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ECCCchhhHHHHHHHHHhCCCEE
Confidence 54422 2334556667776544
No 275
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=36.10 E-value=1.6e+02 Score=30.54 Aligned_cols=79 Identities=9% Similarity=0.135 Sum_probs=49.3
Q ss_pred hCCCE-EEEECCHHHHHHHHHhcCCCceEEEEeCCCC--CCCH----------HHHHHHH----h-ccCCCcEEEEe-cC
Q 006057 36 RCQYH-VTTTSQAITALKLLRENKNKFDLVISDVHMP--DMDG----------FKLLELV----G-LEMDLPVIMLS-GN 96 (663)
Q Consensus 36 ~~gy~-V~tasdg~EALelLre~k~~pDLVIlDv~MP--dmDG----------~eLLe~I----r-~~~dIPVIILS-A~ 96 (663)
+.+.. +..+.+.++|..+..- .||+|++..-+- +.-| .+.++.+ + ..+++.|+.-. .-
T Consensus 161 ~~gL~Ti~~v~~~eeA~amA~a---gpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpI 237 (286)
T 2p10_A 161 KLDLLTTPYVFSPEDAVAMAKA---GADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPI 237 (286)
T ss_dssp HTTCEECCEECSHHHHHHHHHH---TCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTC
T ss_pred HCCCeEEEecCCHHHHHHHHHc---CCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCC
Confidence 34544 5578899999888765 589999865421 3323 2233322 1 23565444333 34
Q ss_pred CChHHHHHHHhc--CCceEEeCC
Q 006057 97 GDPKLVMKGITH--GACDYLLKP 117 (663)
Q Consensus 97 ~d~e~v~kAl~a--GA~DYLlKP 117 (663)
...+.+..+++. |+++|+.-.
T Consensus 238 stpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 238 ANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp CSHHHHHHHHHHCTTCCEEEESH
T ss_pred CCHHHHHHHHhcCCCccEEEeeh
Confidence 678899999999 999999864
No 276
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=36.08 E-value=1.4e+02 Score=28.88 Aligned_cols=97 Identities=16% Similarity=0.183 Sum_probs=60.9
Q ss_pred HHHHHHhCCCEEEE--ECCHHHHHHHHHhcCCCceEEEEeCCC----C-CCCHHHHHHHH---hccCCCcEEEEecCCCh
Q 006057 30 LETLLRRCQYHVTT--TSQAITALKLLRENKNKFDLVISDVHM----P-DMDGFKLLELV---GLEMDLPVIMLSGNGDP 99 (663)
Q Consensus 30 L~~lL~~~gy~V~t--asdg~EALelLre~k~~pDLVIlDv~M----P-dmDG~eLLe~I---r~~~dIPVIILSA~~d~ 99 (663)
.-..|+..|+.+.. +..+...+..+..- .||.|=+|-.+ . +.....+++.+ .+..++.|| ..+-.+.
T Consensus 144 ~l~~l~~~G~~ialDdfG~g~ssl~~L~~l--~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~vi-aeGVEt~ 220 (259)
T 3s83_A 144 ILKTLRDAGAGLALDDFGTGFSSLSYLTRL--PFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV-AEGVENA 220 (259)
T ss_dssp HHHHHHHHTCEEEEECC---CHHHHHHHHS--CCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEEE-ECCCCSH
T ss_pred HHHHHHHCCCEEEEECCCCCchhHHHHHhC--CCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeEE-EEeCCCH
Confidence 34456667888764 45566677777764 68999998633 1 11223344433 234566665 4555666
Q ss_pred HHHHHHHhcCCce----EEeCCCCHHHHHHHHHH
Q 006057 100 KLVMKGITHGACD----YLLKPVRIEELKNIWQH 129 (663)
Q Consensus 100 e~v~kAl~aGA~D----YLlKPvs~eeL~~~~q~ 129 (663)
+....+.+.|++. |+.||...+++...++.
T Consensus 221 ~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~~ 254 (259)
T 3s83_A 221 EMAHALQSLGCDYGQGFGYAPALSPQEAEVYLNE 254 (259)
T ss_dssp HHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHHH
T ss_pred HHHHHHHhcCCCEeecCcccCCCCHHHHHHHHHH
Confidence 7777888888864 47799999998776543
No 277
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=35.99 E-value=1.1e+02 Score=30.64 Aligned_cols=91 Identities=10% Similarity=-0.000 Sum_probs=54.7
Q ss_pred HHHHHhCCC-EEEEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhc
Q 006057 31 ETLLRRCQY-HVTTTSQAITALKLLRE-NKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITH 108 (663)
Q Consensus 31 ~~lL~~~gy-~V~tasdg~EALelLre-~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~a 108 (663)
...|...+. -|....+.++++++++. ....+.+|=+.+ -.-++++.++.+++...-.+|-...--..+.+..++++
T Consensus 28 ~~~l~~~~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~--~t~~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~A 105 (232)
T 4e38_A 28 NNQLKALKVIPVIAIDNAEDIIPLGKVLAENGLPAAEITF--RSDAAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEA 105 (232)
T ss_dssp HHHHHHHCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEET--TSTTHHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHH
T ss_pred HHHHHhCCEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeC--CCCCHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHc
Confidence 344444453 45556666776655442 112466555544 45578999998876532244444445568899999999
Q ss_pred CCceEEeCCCCHHHH
Q 006057 109 GACDYLLKPVRIEEL 123 (663)
Q Consensus 109 GA~DYLlKPvs~eeL 123 (663)
||+..+.--++.+.+
T Consensus 106 GA~fIvsP~~~~~vi 120 (232)
T 4e38_A 106 GATFVVSPGFNPNTV 120 (232)
T ss_dssp TCSEEECSSCCHHHH
T ss_pred CCCEEEeCCCCHHHH
Confidence 997666544554444
No 278
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=35.69 E-value=47 Score=35.44 Aligned_cols=100 Identities=21% Similarity=0.276 Sum_probs=63.2
Q ss_pred EEEEEe--CCHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHH-------------------hcCCCceEEEEeCCCC
Q 006057 16 RVLAVD--DDPTC---LLLLETLLRRCQYHVTTTSQAITALKLLR-------------------ENKNKFDLVISDVHMP 71 (663)
Q Consensus 16 RVLIVD--DD~~~---r~iL~~lL~~~gy~V~tasdg~EALelLr-------------------e~k~~pDLVIlDv~MP 71 (663)
+|+||- .++.. ...|.+.|...++.|..-....+.+.... +....+|+||+ -
T Consensus 40 ~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DlvI~----l 115 (365)
T 3pfn_A 40 SVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDDISNQIDFIIC----L 115 (365)
T ss_dssp EEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCCCTTTCSEEEE----E
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhhcccCCCEEEE----E
Confidence 688885 33333 44556666667999886554444332211 01135788887 4
Q ss_pred CCCHHHHHHHHh--ccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 72 DMDGFKLLELVG--LEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 72 dmDG~eLLe~Ir--~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+.||. +|+..+ ....+|||-+. .|-.+||. +++++++..+|..++++.
T Consensus 116 GGDGT-~L~aa~~~~~~~~PvlGiN-------------~G~LGFLt-~~~~~~~~~~l~~vl~g~ 165 (365)
T 3pfn_A 116 GGDGT-LLYASSLFQGSVPPVMAFH-------------LGSLGFLT-PFSFENFQSQVTQVIEGN 165 (365)
T ss_dssp SSTTH-HHHHHHHCSSSCCCEEEEE-------------SSSCTTTC-CEESTTHHHHHHHHHHSC
T ss_pred cChHH-HHHHHHHhccCCCCEEEEc-------------CCCCccce-eecHHHHHHHHHHHHcCC
Confidence 77883 333332 23468988765 36778888 888899999999998764
No 279
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=35.35 E-value=64 Score=32.36 Aligned_cols=87 Identities=14% Similarity=0.152 Sum_probs=53.2
Q ss_pred cEEEEEeC-CHHH---HHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH--HHHHhcc-CC
Q 006057 15 LRVLAVDD-DPTC---LLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKL--LELVGLE-MD 87 (663)
Q Consensus 15 lRVLIVDD-D~~~---r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eL--Le~Ir~~-~d 87 (663)
|+|+||-. .+.. .+.+.+.|+..|+++. ...+|+||+ -+.||-=+ ++.+... .+
T Consensus 1 mki~ii~n~~~~~~~~~~~l~~~l~~~g~~v~---------------~~~~D~vv~----lGGDGT~l~aa~~~~~~~~~ 61 (272)
T 2i2c_A 1 MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYD---------------DVEPEIVIS----IGGDGTFLSAFHQYEERLDE 61 (272)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHTTSSCEEC---------------SSSCSEEEE----EESHHHHHHHHHHTGGGTTT
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHHCCCEeC---------------CCCCCEEEE----EcCcHHHHHHHHHHhhcCCC
Confidence 46766644 2222 3345566777788771 135899887 46788432 2333322 47
Q ss_pred CcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 88 LPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 88 IPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+||+-+.. |-.+|+. .+.++++..+++.++++.
T Consensus 62 ~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~g~ 94 (272)
T 2i2c_A 62 IAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAKGE 94 (272)
T ss_dssp CEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHTTC
T ss_pred CCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHcCC
Confidence 89887742 5556665 556788888888887653
No 280
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=35.13 E-value=1.9e+02 Score=24.98 Aligned_cols=51 Identities=20% Similarity=0.132 Sum_probs=24.1
Q ss_pred CceEEEEeCCCCCCC-HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 60 KFDLVISDVHMPDMD-GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 60 ~pDLVIlDv~MPdmD-G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
..|+||+-+. +.. -..++..++......||+.... ........+.|++..+
T Consensus 70 ~~d~vi~~~~--~~~~n~~~~~~a~~~~~~~iia~~~~--~~~~~~l~~~G~~~vi 121 (141)
T 3llv_A 70 GVSAVLITGS--DDEFNLKILKALRSVSDVYAIVRVSS--PKKKEEFEEAGANLVV 121 (141)
T ss_dssp TCSEEEECCS--CHHHHHHHHHHHHHHCCCCEEEEESC--GGGHHHHHHTTCSEEE
T ss_pred cCCEEEEecC--CHHHHHHHHHHHHHhCCceEEEEEcC--hhHHHHHHHcCCCEEE
Confidence 4677776432 211 1223333343334455554433 2344556678875444
No 281
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=35.08 E-value=55 Score=33.45 Aligned_cols=58 Identities=14% Similarity=0.196 Sum_probs=43.0
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCC
Q 006057 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPV 118 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPv 118 (663)
.||+||+=---|..-|-.-.+.+-...++|.|+++...... +..+++..-.+||+-+.
T Consensus 64 ~pDfvI~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~ 121 (283)
T 1qv9_A 64 EPDFIVYGGPNPAAPGPSKAREMLADSEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKP 121 (283)
T ss_dssp CCSEEEEECSCTTSHHHHHHHHHHHTSSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETT
T ss_pred CCCEEEEECCCCCCCCchHHHHHHHhCCCCEEEEcCCcchh-hHHHHHhcCCcEEEEec
Confidence 68999986666667787777766667899999999766555 55777777777776553
No 282
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=35.03 E-value=70 Score=32.36 Aligned_cols=66 Identities=21% Similarity=0.269 Sum_probs=44.0
Q ss_pred ceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 61 FDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 61 pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.|++|+-.. .+.-|..+++.+. ..+|||+..... ..+.+..|-.+++..|-+.++|.+++..++..
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma--~G~PvI~~~~~~----~~e~v~~~~~g~~~~~~d~~~la~~i~~l~~~ 350 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMA--CGVPCIGTRVGG----IPEVIQHGDTGYLCEVGDTTGVADQAIQLLKD 350 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHH--TTCCEEEECCTT----STTTCCBTTTEEEECTTCHHHHHHHHHHHHHC
T ss_pred CCEEEeccc-cCCCchHHHHHHh--cCCCEEEecCCC----hHHHhhcCCceEEeCCCCHHHHHHHHHHHHcC
Confidence 467776433 2334566666553 468988643322 22345567789999999999999999988753
No 283
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=34.79 E-value=61 Score=33.64 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=46.9
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 60 KFDLVISDVHMPDMDGFKLLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eLLe~Ir~~~--dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
..++|.+|+.- .....++++++++.. .+||++--+-.+.+.+.+++.+||+..++--
T Consensus 199 G~~lV~LD~~~-~~v~~e~V~~I~~~~~~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 199 GFHMVYLYSRN-EHVPPEVVRHFRKGLGPDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp TCSEEEEECSS-SCCCHHHHHHHHHHSCTTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCCEEEEcCCC-CcCCHHHHHHHHHhcCCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 35899999754 334568888887766 8999988888999999999999999988765
No 284
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=34.74 E-value=75 Score=30.79 Aligned_cols=70 Identities=23% Similarity=0.340 Sum_probs=47.4
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006057 10 QFPSGLRVLAVDDDPTCLLLLETLLRRCQYH--VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 10 ~FP~glRVLIVDDD~~~r~iL~~lL~~~gy~--V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
.+|.+.+|..||-++...+..++.++..+.. |. ...++.+.+..+.. ...||+|++|...+ +-..+++.+
T Consensus 84 ~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~-~~~fD~V~~d~~~~--~~~~~l~~~ 156 (248)
T 3tfw_A 84 ELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGE-CPAFDLIFIDADKP--NNPHYLRWA 156 (248)
T ss_dssp TSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCS-CCCCSEEEECSCGG--GHHHHHHHH
T ss_pred hCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCC-CCCeEEEEECCchH--HHHHHHHHH
Confidence 4555779999999999999999999877652 43 56677665544321 23799999987432 233455544
No 285
>2l2q_A PTS system, cellobiose-specific IIB component (CE; cellobiose-specific phosphotransferase IIB component, struct genomics; NMR {Borrelia burgdorferi}
Probab=34.68 E-value=42 Score=29.10 Aligned_cols=77 Identities=14% Similarity=0.235 Sum_probs=46.3
Q ss_pred CCCcEEEEEeCC----HHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc
Q 006057 12 PSGLRVLAVDDD----PTCLLLLETLLRRCQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE 85 (663)
Q Consensus 12 P~glRVLIVDDD----~~~r~iL~~lL~~~gy~--V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~ 85 (663)
|..|+||+|-.. ......|++.+...|+. |..+. ..++-..+ ..+|+||+-..+... ++-++.....
T Consensus 2 ~~~mkIlvvC~~G~~TSll~~kl~~~~~~~gi~~~i~~~~-~~~~~~~~----~~~D~Ii~t~~l~~~--~~~~~~~~~~ 74 (109)
T 2l2q_A 2 PGSMNILLVCGAGMSTSMLVQRIEKYAKSKNINATIEAIA-ETRLSEVV----DRFDVVLLAPQSRFN--KKRLEEITKP 74 (109)
T ss_dssp CCCEEEEEESSSSCSSCHHHHHHHHHHHHHTCSEEEEEEC-STTHHHHT----TTCSEEEECSCCSSH--HHHHHHHHHH
T ss_pred CCceEEEEECCChHhHHHHHHHHHHHHHHCCCCeEEEEec-HHHHHhhc----CCCCEEEECCccHHH--HHHHHHHhcc
Confidence 445888888643 26667888888877764 44333 33333322 258999998776543 3333322223
Q ss_pred CCCcEEEEec
Q 006057 86 MDLPVIMLSG 95 (663)
Q Consensus 86 ~dIPVIILSA 95 (663)
.++||+++..
T Consensus 75 ~~~pv~~I~~ 84 (109)
T 2l2q_A 75 KGIPIEIINT 84 (109)
T ss_dssp HTCCEEECCH
T ss_pred cCCCEEEECh
Confidence 4789988764
No 286
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=34.59 E-value=89 Score=34.51 Aligned_cols=67 Identities=18% Similarity=0.159 Sum_probs=46.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHH-HHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPDMDGF-KLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPdmDG~-eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+..+.++.+.+. .+|+|.+|...+...++ +++++++.. +++|||+-. -...+.+..+.++||+.+..
T Consensus 256 d~~era~aLvea--Gvd~I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~g~-v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVKA--SVDAIVLDTAHGHSQGVIDKVKEVRAKYPSLNIIAGN-VATAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHhh--ccceEEecccccchhhhhhHHHHHHHhCCCceEEeee-eccHHHHHHHHHhCCCEEEE
Confidence 344444445443 69999999887765553 577777654 467887533 34677889999999988875
No 287
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=34.56 E-value=76 Score=33.91 Aligned_cols=89 Identities=13% Similarity=0.119 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEecCC
Q 006057 27 LLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE--MDLPVIMLSGNG 97 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~~--~dIPVIILSA~~ 97 (663)
.+.++.+-+..+..|+ .+.+.++|..+... .+|.|++.-+-. +..-++++..++.. .++|||+-.+-.
T Consensus 241 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~~~ipVia~GGI~ 317 (392)
T 2nzl_A 241 WEDIKWLRRLTSLPIVAKGILRGDDAREAVKH---GLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVR 317 (392)
T ss_dssp HHHHHHHC--CCSCEEEEEECCHHHHHHHHHT---TCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHTTSSEEEECSSCC
T ss_pred HHHHHHHHHhhCCCEEEEecCCHHHHHHHHHc---CCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcCCCCEEEEECCCC
Confidence 3445555444444433 35678888777653 589888854321 22346666655432 369999988888
Q ss_pred ChHHHHHHHhcCCceEEe-CCC
Q 006057 98 DPKLVMKGITHGACDYLL-KPV 118 (663)
Q Consensus 98 d~e~v~kAl~aGA~DYLl-KPv 118 (663)
....+.+++..||+...+ .|+
T Consensus 318 ~g~Dv~kalalGAd~V~iGr~~ 339 (392)
T 2nzl_A 318 KGTDVLKALALGAKAVFVGRPI 339 (392)
T ss_dssp SHHHHHHHHHTTCSEEEECHHH
T ss_pred CHHHHHHHHHhCCCeeEECHHH
Confidence 899999999999988654 443
No 288
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=34.52 E-value=1.1e+02 Score=30.93 Aligned_cols=107 Identities=7% Similarity=0.024 Sum_probs=65.2
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCE---------EEEEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHH
Q 006057 15 LRVLAVDDDPT-----CLLLLETLLRRCQYH---------VTTTS--QAITALKLLRENKNKFDLVISDVHMPDMDGFKL 78 (663)
Q Consensus 15 lRVLIVDDD~~-----~r~iL~~lL~~~gy~---------V~tas--dg~EALelLre~k~~pDLVIlDv~MPdmDG~eL 78 (663)
.+++||.+.+. ....++++++..+.. |.... +.++..+++.. .|++++--. -+.-|+.+
T Consensus 216 ~~l~ivG~g~~~~~~~l~~~~~~~~~~~~l~~~v~~l~~vv~~~g~~~~~~~~~~~~~----adv~v~pS~-~E~~~~~~ 290 (413)
T 3oy2_A 216 AKVRFLCNSHHESKFDLHSIALRELVASGVDNVFTHLNKIMINRTVLTDERVDMMYNA----CDVIVNCSS-GEGFGLCS 290 (413)
T ss_dssp CCEEEEEECCTTCSCCHHHHHHHHHHHHTCSCHHHHHTTEEEECSCCCHHHHHHHHHH----CSEEEECCS-CCSSCHHH
T ss_pred cEEEEEeCCcccchhhHHHHHHHHHHHcCcccccccccceeeccCcCCHHHHHHHHHh----CCEEEeCCC-cCCCCcHH
Confidence 46666654332 235556666555533 33323 24555566653 478877332 23446667
Q ss_pred HHHHhccCCCcEEEEecCCChHHHHHHHhcCCc---------------eE--EeCCCCHHHHHHHHHHHHHh
Q 006057 79 LELVGLEMDLPVIMLSGNGDPKLVMKGITHGAC---------------DY--LLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 79 Le~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~---------------DY--LlKPvs~eeL~~~~q~Vlrr 133 (663)
++.+. ..+|||.-. .....+.+..|.. ++ +..|-+.++|..++ .++..
T Consensus 291 lEAma--~G~PvI~s~----~~g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~~~la~~i-~l~~~ 355 (413)
T 3oy2_A 291 AEGAV--LGKPLIISA----VGGADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDVDDLVEAF-TFFKD 355 (413)
T ss_dssp HHHHT--TTCCEEEEC----CHHHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCHHHHHHHH-HHTTS
T ss_pred HHHHH--cCCCEEEcC----CCChHHHHccCcccccccccccccccccCcceeeCCCCHHHHHHHH-HHhcC
Confidence 76653 568988632 3345666677776 88 99999999999999 88753
No 289
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=34.47 E-value=62 Score=30.51 Aligned_cols=61 Identities=18% Similarity=0.371 Sum_probs=43.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCE--E-EEECCHHHHHHHHHhc--CCCceEEEEeCCCC
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYH--V-TTTSQAITALKLLREN--KNKFDLVISDVHMP 71 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy~--V-~tasdg~EALelLre~--k~~pDLVIlDv~MP 71 (663)
++.+.+|..||-++...+..++.++..+.. | ....++.+.+..+... ...||+|++|....
T Consensus 80 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 80 LQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDMVFLDHWKD 145 (221)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSEEEECSCGG
T ss_pred CCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEEEEEcCCcc
Confidence 455679999999999999999988877642 4 3567777765544310 03699999997443
No 290
>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*
Probab=34.47 E-value=2.1e+02 Score=29.78 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCCCceEEEEeCC------CCCCC--HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE
Q 006057 47 AITALKLLRENKNKFDLVISDVH------MPDMD--GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY 113 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~------MPdmD--G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DY 113 (663)
..+..+.+.+. .+|.|-+-.. ++... -+++++.+++...+|||....-.+.+.+.++++.|.+|+
T Consensus 231 ~~~la~~L~~~--Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPVi~~GgI~s~e~a~~~L~~G~aD~ 303 (340)
T 3gr7_A 231 YVPYAKRMKEQ--GVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPTGAVGLITSGWQAEEILQNGRADL 303 (340)
T ss_dssp HHHHHHHHHHT--TCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCEEEESSCCCHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHc--CCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcEEeeCCCCCHHHHHHHHHCCCeeE
Confidence 34444555543 4776655321 11122 357788888777899998888788999999999995554
No 291
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=34.37 E-value=3.9e+02 Score=27.21 Aligned_cols=106 Identities=13% Similarity=0.064 Sum_probs=62.8
Q ss_pred CcEEEEEeCCHHHHH-HHHHHHHhCCCEEE-EE-CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 14 GLRVLAVDDDPTCLL-LLETLLRRCQYHVT-TT-SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~-iL~~lL~~~gy~V~-ta-sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
.+||.||.--..-+. .+..+...-+++|+ .+ .+.+.+.+..... .+..+ .|+ -+.+. ..++-+
T Consensus 27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--g~~~~-~~~----------~~ll~-~~~~D~ 92 (350)
T 3rc1_A 27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERF--GGEPV-EGY----------PALLE-RDDVDA 92 (350)
T ss_dssp CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHH--CSEEE-ESH----------HHHHT-CTTCSE
T ss_pred ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHc--CCCCc-CCH----------HHHhc-CCCCCE
Confidence 479999998877663 44444443367765 33 3444444444432 22222 222 12232 244555
Q ss_pred EEEec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 91 IMLSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 91 IILSA--~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
|+++. ....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 93 V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~ 139 (350)
T 3rc1_A 93 VYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARER 139 (350)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred EEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 55543 33466788999999999999995 678888877766544
No 292
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=34.35 E-value=1.5e+02 Score=30.29 Aligned_cols=108 Identities=17% Similarity=0.097 Sum_probs=61.4
Q ss_pred CCCcEEEEEeCC-HHHHHHHHHHHHh-CCCEEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCC
Q 006057 12 PSGLRVLAVDDD-PTCLLLLETLLRR-CQYHVT-TTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMD 87 (663)
Q Consensus 12 P~glRVLIVDDD-~~~r~iL~~lL~~-~gy~V~-tasd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~d 87 (663)
...+||.||--- ..-+..+..+... .+++++ .+.. .+.+.++.... ...-+..| --++ +. .++
T Consensus 16 ~~~irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~--~~~~~~~~-------~~~l---l~-~~~ 82 (340)
T 1zh8_A 16 LRKIRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMV--GNPAVFDS-------YEEL---LE-SGL 82 (340)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHH--SSCEEESC-------HHHH---HH-SSC
T ss_pred CCceeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHh--CCCcccCC-------HHHH---hc-CCC
Confidence 345899999887 3333344444333 356765 4443 33343333322 11112222 1222 22 234
Q ss_pred CcEEEEec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 006057 88 LPVIMLSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (663)
Q Consensus 88 IPVIILSA--~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlr 132 (663)
+-+|+++. ..-.+.+.+|+++|..=|+-||+ +.++...+++.+-+
T Consensus 83 vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 83 VDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp CSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55555543 33457889999999999999996 78888887776644
No 293
>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*
Probab=34.24 E-value=1e+02 Score=32.47 Aligned_cols=88 Identities=16% Similarity=0.103 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhcc--CCCcEEEEecC
Q 006057 26 CLLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLE--MDLPVIMLSGN 96 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~~--~dIPVIILSA~ 96 (663)
..+.++.+-+..+..|+ .+.+.++|..+... .+|.|.+.-+-. +..-++++..++.. .++|||+-.+-
T Consensus 217 ~~~~i~~lr~~~~~PvivK~v~~~e~a~~a~~~---Gad~I~vs~~ggr~~~~g~~~~~~l~~v~~~v~~~ipVia~GGI 293 (368)
T 2nli_A 217 SPRDIEEIAGHSGLPVFVKGIQHPEDADMAIKR---GASGIWVSNHGARQLYEAPGSFDTLPAIAERVNKRVPIVFDSGV 293 (368)
T ss_dssp CHHHHHHHHHHSSSCEEEEEECSHHHHHHHHHT---TCSEEEECCGGGTSCSSCCCHHHHHHHHHHHHTTSSCEEECSSC
T ss_pred hHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHc---CCCEEEEcCCCcCCCCCCCChHHHHHHHHHHhCCCCeEEEECCC
Confidence 34556666665555443 45778888776653 589888854311 23356777666532 26999999898
Q ss_pred CChHHHHHHHhcCCceEEeC
Q 006057 97 GDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 97 ~d~e~v~kAl~aGA~DYLlK 116 (663)
.....+.+++..||+...+-
T Consensus 294 ~~g~D~~kalalGAd~V~iG 313 (368)
T 2nli_A 294 RRGEHVAKALASGADVVALG 313 (368)
T ss_dssp CSHHHHHHHHHTTCSEEEEC
T ss_pred CCHHHHHHHHHcCCCEEEEC
Confidence 99999999999999987654
No 294
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=33.74 E-value=79 Score=34.09 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmDG-~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.+.++.+.+. .+|+|++|.....-.. .++++.++...++|||+=. -...+.+..+.++||+....
T Consensus 146 ~e~~~~lvea--GvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~-V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 146 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 211 (400)
T ss_dssp CHHHHHHHHH--TCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEee-cCCHHHHHHHHHcCCCEEEE
Confidence 4445555443 5999999976543222 5777777766678888622 24577889999999999887
No 295
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=33.66 E-value=41 Score=32.71 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=55.4
Q ss_pred HHHhCCCEEE-EE--CCHHHHHHHHHhcCCCceEEEEeCCCCCCC-------HHHHHHHHhccC-CCcEEEEecCCChHH
Q 006057 33 LLRRCQYHVT-TT--SQAITALKLLRENKNKFDLVISDVHMPDMD-------GFKLLELVGLEM-DLPVIMLSGNGDPKL 101 (663)
Q Consensus 33 lL~~~gy~V~-ta--sdg~EALelLre~k~~pDLVIlDv~MPdmD-------G~eLLe~Ir~~~-dIPVIILSA~~d~e~ 101 (663)
.++..|..+. .+ .+..+.++.+.......|.|+++-..|+.. +++.+++++... ++||++.-+-.. +.
T Consensus 108 ~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~-~n 186 (228)
T 1h1y_A 108 SIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGP-ST 186 (228)
T ss_dssp HHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCST-TT
T ss_pred HHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCH-HH
Confidence 3344465544 23 233444544443100479999988777643 355566665544 788876655444 67
Q ss_pred HHHHHhcCCceEEeC-----CCCHHHHHHHHHHH
Q 006057 102 VMKGITHGACDYLLK-----PVRIEELKNIWQHV 130 (663)
Q Consensus 102 v~kAl~aGA~DYLlK-----Pvs~eeL~~~~q~V 130 (663)
+.+++++||+.++.= .-++.+-...++..
T Consensus 187 i~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~~~ 220 (228)
T 1h1y_A 187 IDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 220 (228)
T ss_dssp HHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHH
Confidence 778888899987653 33444444444433
No 296
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Probab=33.58 E-value=1.7e+02 Score=30.77 Aligned_cols=75 Identities=9% Similarity=0.006 Sum_probs=47.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC---------------CCE-EE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRC---------------QYH-VT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFK 77 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~---------------gy~-V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~e 77 (663)
.+|..||-++...+.+++-++.. +.. +. ...|+.+.+... ...||+|++|- -....+
T Consensus 72 ~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~~---~~~fD~I~lDP---~~~~~~ 145 (378)
T 2dul_A 72 EEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAER---HRYFHFIDLDP---FGSPME 145 (378)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHHS---TTCEEEEEECC---SSCCHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHhc---cCCCCEEEeCC---CCCHHH
Confidence 57999999999999999888876 542 43 556776665433 23699999884 234345
Q ss_pred HHHHH-hccCCCcEEEEec
Q 006057 78 LLELV-GLEMDLPVIMLSG 95 (663)
Q Consensus 78 LLe~I-r~~~dIPVIILSA 95 (663)
+++.. +.-..--+|++|.
T Consensus 146 ~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 146 FLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HHHHHHHHEEEEEEEEEEE
T ss_pred HHHHHHHhcCCCCEEEEEe
Confidence 55432 2211122666665
No 297
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=33.33 E-value=56 Score=24.52 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=34.4
Q ss_pred ceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhh
Q 006057 201 RVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQK 249 (663)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQk 249 (663)
+-.||+|-...++++|..+|..+= ..|.+.| ++-|..++..|-.+
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W--~~Ia~~~--~~Rt~~qcr~Rw~~ 47 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRW--SVIAKHL--KGRIGKQCRERWHN 47 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCH--HHHHTTS--TTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcChH--HHHHHHc--CCCCHHHHHHHHHH
Confidence 457999999999999999995321 4566666 68898888885443
No 298
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=33.29 E-value=2.8e+02 Score=29.03 Aligned_cols=82 Identities=18% Similarity=0.219 Sum_probs=53.5
Q ss_pred CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCCcEEEEecCCChHHHHHHHhcCCceEEe-CCC
Q 006057 45 SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-----MDLPVIMLSGNGDPKLVMKGITHGACDYLL-KPV 118 (663)
Q Consensus 45 sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-----~dIPVIILSA~~d~e~v~kAl~aGA~DYLl-KPv 118 (663)
.+... ++.+... .+|.|++|++-...+--.+.+.++.. ...++++=+...+...+..++..|+++.++ |=-
T Consensus 51 ~~p~~-~e~a~~~--GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~ 127 (339)
T 1izc_A 51 PSTFV-TKVLAAT--KPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVE 127 (339)
T ss_dssp CCHHH-HHHHHHT--CCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCC
T ss_pred CCHHH-HHHHHhC--CCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCC
Confidence 34444 4444433 59999999976544544444444321 126788878777888999999999987544 335
Q ss_pred CHHHHHHHHHH
Q 006057 119 RIEELKNIWQH 129 (663)
Q Consensus 119 s~eeL~~~~q~ 129 (663)
+.++++.+.+.
T Consensus 128 saee~~~~~~~ 138 (339)
T 1izc_A 128 TVEEVREFVKE 138 (339)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 67888876655
No 299
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=33.06 E-value=65 Score=26.50 Aligned_cols=44 Identities=14% Similarity=0.206 Sum_probs=33.7
Q ss_pred ceeeehhhhHHHHHHHHHhcCCCcchH---HHHhhcCCCCCCHHHHHHhhhh
Q 006057 201 RVVWSVELHRKFVAAVNQLGIDKAVPK---KILDLMNVEKLTRENVASHLQK 249 (663)
Q Consensus 201 rv~Wt~eLh~kFv~av~~LG~dkA~pk---~Ile~m~v~~LT~~~VaSHLQk 249 (663)
+-.||.|-+..|+.|+..++.+ +|. +|-+.| |-|-++|..|-++
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~--t~~RW~~IA~~l---gRt~~eV~~~y~~ 54 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGG--TPGRWEKIAHEL---GRSVTDVTTKAKQ 54 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTT--CTTHHHHHHHHH---TSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCC--CCcHHHHHHHHh---CCCHHHHHHHHHH
Confidence 4469999999999999998733 233 577776 5799999987544
No 300
>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*
Probab=32.93 E-value=1.4e+02 Score=32.95 Aligned_cols=87 Identities=16% Similarity=0.082 Sum_probs=58.0
Q ss_pred HHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhc-------cCCCcEEE
Q 006057 27 LLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGL-------EMDLPVIM 92 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~-------~~dIPVII 92 (663)
.+.++.+-+..+..|+ .+.+.++|..+... .+|.|++.-+-. ....++++..+.. ...+|||+
T Consensus 332 ~~~i~~lr~~~~~PvivKgv~~~e~A~~a~~a---Gad~I~vs~hgG~~~d~~~~~~~~l~~v~~~v~~~~~~~~ipVia 408 (511)
T 1kbi_A 332 WKDIEELKKKTKLPIVIKGVQRTEDVIKAAEI---GVSGVVLSNHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFV 408 (511)
T ss_dssp HHHHHHHHHHCSSCEEEEEECSHHHHHHHHHT---TCSEEEECCTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEE
T ss_pred HHHHHHHHHHhCCcEEEEeCCCHHHHHHHHHc---CCCEEEEcCCCCccCCCCCchHHHHHHHHHHHHhhccCCCcEEEE
Confidence 4456655555565443 45678888776653 589888854321 1224566655432 23799999
Q ss_pred EecCCChHHHHHHHhcCCceEEeC
Q 006057 93 LSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
-.+-.....+.+++.+||+...+-
T Consensus 409 ~GGI~~g~Dv~kaLalGAdaV~iG 432 (511)
T 1kbi_A 409 DGGVRRGTDVLKALCLGAKGVGLG 432 (511)
T ss_dssp ESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred ECCCCCHHHHHHHHHcCCCEEEEC
Confidence 999999999999999999886543
No 301
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=32.92 E-value=2e+02 Score=30.70 Aligned_cols=56 Identities=21% Similarity=0.235 Sum_probs=39.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCC---C------EE-EEECCHHHHHHHHHhcCCCceEEEEeCCC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQ---Y------HV-TTTSQAITALKLLRENKNKFDLVISDVHM 70 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~g---y------~V-~tasdg~EALelLre~k~~pDLVIlDv~M 70 (663)
-+|.+||=|+...+..++.+.... + .+ +...|+.+.++.+.+....||+||+|.--
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~~~~~fDvII~D~~d 277 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTA 277 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCS
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhccCCCceEEEECCCC
Confidence 589999999999988888875321 1 13 35678888776553223479999999854
No 302
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=32.61 E-value=1.2e+02 Score=30.59 Aligned_cols=105 Identities=12% Similarity=0.164 Sum_probs=57.4
Q ss_pred cEEEEEeCCHHHHH-HHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLL-LLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~-iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
+||.||---..-+. .+..+....+++++.+....+..+.+.+.- ....+.. +-.++ +. .++-+|++
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~-g~~~~~~-------~~~~~---l~--~~~D~V~i 69 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRY-RVSATCT-------DYRDV---LQ--YGVDAVMI 69 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHT-TCCCCCS-------STTGG---GG--GCCSEEEE
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHc-CCCcccc-------CHHHH---hh--cCCCEEEE
Confidence 68889987765553 444443333677765544344333333221 1111011 11122 21 34455555
Q ss_pred ecC--CChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 006057 94 SGN--GDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (663)
Q Consensus 94 SA~--~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlr 132 (663)
+.. ...+.+.+++++|..-|+-||+ +.++...+++.+-+
T Consensus 70 ~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 70 HAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp CSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred ECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 443 3456777899999999999996 57777776665543
No 303
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=32.54 E-value=1.6e+02 Score=27.46 Aligned_cols=114 Identities=18% Similarity=0.251 Sum_probs=63.3
Q ss_pred CCcEEEEEeCCH-----H-HHHHHHHHHHhCCCEEEEE------------C---C----HHHHHHHHHhcCCCceEEEEe
Q 006057 13 SGLRVLAVDDDP-----T-CLLLLETLLRRCQYHVTTT------------S---Q----AITALKLLRENKNKFDLVISD 67 (663)
Q Consensus 13 ~glRVLIVDDD~-----~-~r~iL~~lL~~~gy~V~ta------------s---d----g~EALelLre~k~~pDLVIlD 67 (663)
..++|.|.-... . .++.+++.|+..| .|... . + ...-+++++ .-|+||.+
T Consensus 10 ~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i~----~aD~vva~ 84 (165)
T 2khz_A 10 APCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWLQ----QADVVVAE 84 (165)
T ss_dssp CCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHHH----HCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHHH----hCCEEEEE
Confidence 356888884322 1 4567888888888 76310 0 1 112234554 35999998
Q ss_pred CCCCC-CCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCce---EEeCCCCHHHHHHHHHHHHHhh
Q 006057 68 VHMPD-MDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD---YLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 68 v~MPd-mDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~D---YLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+.-++ ..++|+-- .....+|||++........ ..++..|... |-...++.++|..++...++..
T Consensus 85 ~~~~d~Gt~~EiGy--A~algKPVi~l~~~~~~~~-~n~M~~g~~~~~~~~~~~y~~~el~~~l~~~~~~~ 152 (165)
T 2khz_A 85 VTQPSLGVGYELGR--AVALGKPILCLFRPQSGRV-LSAMIRGAADGSRFQVWDYAEGEVETMLDRYFEAY 152 (165)
T ss_dssp CSSCCHHHHHHHHH--HHHTCSSEEEEECTTTTCC-CCHHHHHTCCSSSEEEEECCTTTHHHHHHHHHHTS
T ss_pred CCCCCCCHHHHHHH--HHHCCCEEEEEEcCCCCCc-chhhhcccCccceeEEEecCHHHHHHHHHHHHHhc
Confidence 86222 12333332 2345789999976542111 1111234332 4444458899999998887654
No 304
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=32.14 E-value=1.9e+02 Score=29.00 Aligned_cols=105 Identities=9% Similarity=0.097 Sum_probs=61.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
+||.||.--..-...+..+....+++++ .+....+..+.+.+. +.+-. .+--++++ .+++-+|++
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~---~~~~~-------~~~~~~l~----~~~~D~V~i 69 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGA---YGCEV-------RTIDAIEA----AADIDAVVI 69 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHH---TTCEE-------CCHHHHHH----CTTCCEEEE
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHH---hCCCc-------CCHHHHhc----CCCCCEEEE
Confidence 6899998876665555554444477776 444333333333332 12111 12222322 234445554
Q ss_pred ec--CCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 006057 94 SG--NGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (663)
Q Consensus 94 SA--~~d~e~v~kAl~aGA~DYLlKP--vs~eeL~~~~q~Vlrr 133 (663)
+. ....+.+.+|+++|..-|+-|| .+.++...+++.+-+.
T Consensus 70 ~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~ 113 (331)
T 4hkt_A 70 CTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDT 113 (331)
T ss_dssp CSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHT
T ss_pred eCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHc
Confidence 43 3346678899999999999999 5678888777665443
No 305
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=32.12 E-value=3.6e+02 Score=27.15 Aligned_cols=107 Identities=13% Similarity=0.195 Sum_probs=61.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAITALKLLRENKNKFD-LVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~-~gy~V~-tasdg~EALelLre~k~~pD-LVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
+||.||.--..-+..+..+... .+++++ .+....+..+.+.+. ..++ -+..| --++ +. .+++-+|
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~-~g~~~~~~~~-------~~~l---l~-~~~~D~V 70 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQ-YQLNATVYPN-------DDSL---LA-DENVDAV 70 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHH-TTCCCEEESS-------HHHH---HH-CTTCCEE
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHH-hCCCCeeeCC-------HHHH---hc-CCCCCEE
Confidence 6888888877666666665523 467766 444333333333322 1211 12211 1122 22 2344454
Q ss_pred EEec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 92 MLSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA--~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
+++. ....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 71 ~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~ 116 (344)
T 3mz0_A 71 LVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIKV 116 (344)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred EECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHH
Confidence 4443 34466788999999999999994 678888777765443
No 306
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=32.10 E-value=86 Score=31.87 Aligned_cols=59 Identities=12% Similarity=0.022 Sum_probs=29.6
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH
Q 006057 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDG 75 (663)
Q Consensus 14 glRVLIVDDD~~---~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG 75 (663)
|.+|++++.|.. ..+.+....+..+..+....+..+....+..- ..+|+||+| .++.+.
T Consensus 134 G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~dlvIiD--T~G~~~ 195 (296)
T 2px0_A 134 HKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEYDHVFVD--TAGRNF 195 (296)
T ss_dssp CCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGSSEEEEE--CCCCCT
T ss_pred CCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCCCEEEEe--CCCCCh
Confidence 567888877652 22233333333343333233333332333222 368999999 455443
No 307
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=31.63 E-value=2.8e+02 Score=29.33 Aligned_cols=87 Identities=13% Similarity=0.009 Sum_probs=57.0
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEeCCCCC---------------------CCHHHHH
Q 006057 26 CLLLLETLLRRCQYHVTT--T---SQAITALKLLRENKNKFDLVISDVHMPD---------------------MDGFKLL 79 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~t--a---sdg~EALelLre~k~~pDLVIlDv~MPd---------------------mDG~eLL 79 (663)
..+.++.+-+..+..|.. + .+.++|..+... .+|.|.++-+ .+ ....+.+
T Consensus 194 ~~~~I~~l~~~~~~PVivK~vg~g~s~e~A~~l~~a---Gad~I~V~g~-GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L 269 (365)
T 3sr7_A 194 WKKHLSDYAKKLQLPFILKEVGFGMDVKTIQTAIDL---GVKTVDISGR-GGTSFAYIENRRGGNRSYLNQWGQTTAQVL 269 (365)
T ss_dssp HHHHHHHHHHHCCSCEEEEECSSCCCHHHHHHHHHH---TCCEEECCCB-C--------------CGGGTTCSCBHHHHH
T ss_pred HHHHHHHHHHhhCCCEEEEECCCCCCHHHHHHHHHc---CCCEEEEeCC-CCcccchhhccccccccccccccccHHHHH
Confidence 445666666666655442 3 467777776654 4888887654 11 1223444
Q ss_pred HHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 80 ELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 80 e~Ir~-~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
..++. ...+|||.-.+-.....+.+++.+||+...+-
T Consensus 270 ~~v~~~~~~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 270 LNAQPLMDKVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp HHHGGGTTTSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 44443 23689998888888899999999999986553
No 308
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes}
Probab=31.63 E-value=4.6e+02 Score=27.26 Aligned_cols=43 Identities=23% Similarity=0.314 Sum_probs=29.8
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
..+|+|++-...+... .++.| ..++..+ +.++|...+..++..
T Consensus 319 ~g~PvV~~~~~~~~~e---~v~~g-~~~lv~~-d~~~l~~ai~~ll~~ 361 (403)
T 3ot5_A 319 MGVPVLVLRDTTERPE---GIEAG-TLKLIGT-NKENLIKEALDLLDN 361 (403)
T ss_dssp TTCCEEECCSSCSCHH---HHHHT-SEEECCS-CHHHHHHHHHHHHHC
T ss_pred hCCCEEEecCCCcchh---heeCC-cEEEcCC-CHHHHHHHHHHHHcC
Confidence 5789987633333222 35677 5777776 999999999988753
No 309
>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*
Probab=31.39 E-value=2e+02 Score=30.13 Aligned_cols=91 Identities=9% Similarity=0.061 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhCC--CEEEE--EC--------CHHHHHHHHHhcCCCceEEEEeCC--------CCCCCHHHHHHHHhc
Q 006057 25 TCLLLLETLLRRCQ--YHVTT--TS--------QAITALKLLRENKNKFDLVISDVH--------MPDMDGFKLLELVGL 84 (663)
Q Consensus 25 ~~r~iL~~lL~~~g--y~V~t--as--------dg~EALelLre~k~~pDLVIlDv~--------MPdmDG~eLLe~Ir~ 84 (663)
..+++++.+-+.+| +.|.. -. +.++++.+++.-...+|.|-+... .+..--+++++.+++
T Consensus 195 f~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~~~~~a~~l~~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~ 274 (343)
T 3kru_A 195 FLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDMMVEYINMIKDKVDLIDVSSGGLLNVDINLYPGYQVKYAETIKK 274 (343)
T ss_dssp HHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHHHHHHHHHHTTTCSEEEEECCCSSCCCCCCCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHHHHHHHHHhhccccEEeccCCceEeeeecccCceeehHHHHHHH
Confidence 44556666666663 43331 11 245666655542222676655311 111123567778877
Q ss_pred cCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 85 EMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 85 ~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
...+|||......+.+.+.++++.|.+|++.
T Consensus 275 ~~~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~ 305 (343)
T 3kru_A 275 RCNIKTSAVGLITTQELAEEILSNERADLVA 305 (343)
T ss_dssp HHTCEEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred hcCcccceeeeeeHHHHHHHHHhchhhHHHH
Confidence 6679999888778889999999999666543
No 310
>2al1_A Enolase 1, 2-phospho-D-; beta barrel, lyase; HET: PEP 2PG; 1.50A {Saccharomyces cerevisiae} SCOP: c.1.11.1 d.54.1.1 PDB: 1ebg_A 1ebh_A* 1one_A* 2one_A* 1p48_A* 1p43_A* 1l8p_A 4enl_A 1nel_A 1els_A 3enl_A 5enl_A* 6enl_A 7enl_A* 2al2_A* 2al2_B* 2xh7_A* 2xgz_A* 2xh2_A* 2xh4_A* ...
Probab=31.08 E-value=55 Score=35.55 Aligned_cols=96 Identities=15% Similarity=0.183 Sum_probs=58.5
Q ss_pred eCCHHHHHHHHHHHHhCCC--EEE---EE-------------------------CCHHHHHHHHHhcCCCceEEEEeCCC
Q 006057 21 DDDPTCLLLLETLLRRCQY--HVT---TT-------------------------SQAITALKLLRENKNKFDLVISDVHM 70 (663)
Q Consensus 21 DDD~~~r~iL~~lL~~~gy--~V~---ta-------------------------sdg~EALelLre~k~~pDLVIlDv~M 70 (663)
+++....+.+++.++..|| .|. -+ -+..++++.+...-.+++|+.++==+
T Consensus 219 ~~~~~~l~~i~~ai~~~G~~g~v~l~vD~aase~~~n~~y~~~~~~~~~~~~~~~t~~eai~~~~~~l~~y~i~~iEdPl 298 (436)
T 2al1_A 219 QTAEEALDLIVDAIKAAGHDGKVKIGLDCASSEFFKDGKYDLDFKNPNSDKSKWLTGPQLADLYHSLMKRYPIVSIEDPF 298 (436)
T ss_dssp SCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTCTTCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCS
T ss_pred cCHHHHHHHHHHHHHHcCCCcceEEEEechhhhhccCCceEEecccccccccccCCHHHHHHHHHHHHHhCCcEEEECCC
Confidence 4556667778888876665 222 11 04577765544321247888886656
Q ss_pred CCCCHHHHHHHHhccCCCcEEEEecCC---ChHHHHHHHhcCCceE-EeCCCC
Q 006057 71 PDMDGFKLLELVGLEMDLPVIMLSGNG---DPKLVMKGITHGACDY-LLKPVR 119 (663)
Q Consensus 71 PdmDG~eLLe~Ir~~~dIPVIILSA~~---d~e~v~kAl~aGA~DY-LlKPvs 119 (663)
+..| ++-.+.++....+||+ .... ....+.++++.|++++ ++|+-.
T Consensus 299 ~~dD-~~g~~~l~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~ikv~q 348 (436)
T 2al1_A 299 AEDD-WEAWSHFFKTAGIQIV--ADDLTVTNPKRIATAIEKKAADALLLKVNQ 348 (436)
T ss_dssp CTTC-HHHHHHHHTTCCSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHH
T ss_pred CCcC-HHHHHHHHhcCCCeEE--ECCcccCCHHHHHHHHHhCCCCEEEechhh
Confidence 5544 5555566555567764 4432 4678889999998765 567743
No 311
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=30.98 E-value=48 Score=33.17 Aligned_cols=64 Identities=14% Similarity=0.198 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCCceEEEEeCCCCCC---CHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHH
Q 006057 49 TALKLLRENKNKFDLVISDVHMPDM---DGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEE 122 (663)
Q Consensus 49 EALelLre~k~~pDLVIlDv~MPdm---DG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~ee 122 (663)
++++.+.+. ..|+|.+-+. -++ +-+++++.+|+ .++|||+|+.... .+..|++++|.-.+..++
T Consensus 24 ~~~~~l~~~--GaD~IelG~S-~g~t~~~~~~~v~~ir~-~~~Pivl~~y~~n------~i~~gvDg~iipdLp~ee 90 (234)
T 2f6u_A 24 EIIKAVADS--GTDAVMISGT-QNVTYEKARTLIEKVSQ-YGLPIVVEPSDPS------NVVYDVDYLFVPTVLNSA 90 (234)
T ss_dssp HHHHHHHTT--TCSEEEECCC-TTCCHHHHHHHHHHHTT-SCCCEEECCSSCC------CCCCCSSEEEEEEETTBS
T ss_pred HHHHHHHHc--CCCEEEECCC-CCCCHHHHHHHHHHhcC-CCCCEEEecCCcc------hhhcCCCEEEEcccCCCC
Confidence 344555443 5789888773 222 24667777777 7899999988732 127899999987554433
No 312
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=30.90 E-value=1.3e+02 Score=31.00 Aligned_cols=106 Identities=14% Similarity=0.134 Sum_probs=61.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTS-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tas-dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.+||.||.--......+...+...+++++ .+. +.+.|.+...+. ...-+.. |--++ + ..+++-+|
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--~~~~~~~-------~~~~l---l-~~~~vD~V 92 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVY--ADARRIA-------TAEEI---L-EDENIGLI 92 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHS--SSCCEES-------CHHHH---H-TCTTCCEE
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHc--CCCcccC-------CHHHH---h-cCCCCCEE
Confidence 47999998654433344445555678866 443 333344444332 1111111 11222 2 23445555
Q ss_pred EEecC--CChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 006057 92 MLSGN--GDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~--~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlr 132 (663)
+++.. ...+.+.+|+++|..=|+-||+ +.++...+++.+-+
T Consensus 93 ~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 137 (361)
T 3u3x_A 93 VSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAE 137 (361)
T ss_dssp EECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHT
T ss_pred EEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 55433 3456788999999999999995 67888877766543
No 313
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=30.75 E-value=3e+02 Score=27.45 Aligned_cols=105 Identities=13% Similarity=0.094 Sum_probs=57.7
Q ss_pred cEEEEEeCCHHHHHH-HHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLL-LETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~i-L~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
+||.||---..-+.. +..+.+ .+++++ .+....+..+.+.+.- ...-+. .+-- +.+. ..++-+|+
T Consensus 1 ~~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~~~~~~~~-g~~~~~-------~~~~---~~l~-~~~~D~V~ 67 (332)
T 2glx_A 1 NRWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERGAAYATEN-GIGKSV-------TSVE---ELVG-DPDVDAVY 67 (332)
T ss_dssp CEEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHHHHHHHHT-TCSCCB-------SCHH---HHHT-CTTCCEEE
T ss_pred CeEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHHHHHHHHc-CCCccc-------CCHH---HHhc-CCCCCEEE
Confidence 578888776665555 444444 678765 4443333333333211 110000 1211 2232 23455555
Q ss_pred EecC--CChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 006057 93 LSGN--GDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (663)
Q Consensus 93 LSA~--~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlr 132 (663)
++.. ...+.+.+++++|..-|+.||+ +.++...+++.+-+
T Consensus 68 i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~~ 111 (332)
T 2glx_A 68 VSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAARE 111 (332)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred EeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 5443 3356788899999988999996 57777776665543
No 314
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=30.62 E-value=1.4e+02 Score=30.74 Aligned_cols=88 Identities=18% Similarity=0.084 Sum_probs=56.6
Q ss_pred HHHHHHHHHhCCCEEEEE-----CCHHHHHHHHHhcCCCceEEEEeCCCC-----------------------CCCHHHH
Q 006057 27 LLLLETLLRRCQYHVTTT-----SQAITALKLLRENKNKFDLVISDVHMP-----------------------DMDGFKL 78 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~ta-----sdg~EALelLre~k~~pDLVIlDv~MP-----------------------dmDG~eL 78 (663)
.+.++.+-+ .+..|..- .+.++|..+.. ..+|.|.+.-+-. +...+++
T Consensus 171 ~~~i~~vr~-~~~Pv~vK~v~~g~~~e~a~~~~~---~G~d~I~vs~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~ 246 (332)
T 1vcf_A 171 VERLAELLP-LPFPVMVKEVGHGLSREAALALRD---LPLAAVDVAGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARA 246 (332)
T ss_dssp HHHHHHHCS-CSSCEEEECSSSCCCHHHHHHHTT---SCCSEEECCCBTSCCHHHHHHTC--------CCTTCSCBHHHH
T ss_pred HHHHHHHHc-CCCCEEEEecCCCCCHHHHHHHHH---cCCCEEEeCCCCCCcchhHHHhhccccchhhhHhhccccHHHH
Confidence 344554444 55555533 56677664432 3689888754321 1234566
Q ss_pred HHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEE-eCCC
Q 006057 79 LELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYL-LKPV 118 (663)
Q Consensus 79 Le~Ir~~~-dIPVIILSA~~d~e~v~kAl~aGA~DYL-lKPv 118 (663)
+..++... ++|||...+-.....+.+++..||+... -.|+
T Consensus 247 l~~v~~~~~~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~ 288 (332)
T 1vcf_A 247 ILEVREVLPHLPLVASGGVYTGTDGAKALALGADLLAVARPL 288 (332)
T ss_dssp HHHHHHHCSSSCEEEESSCCSHHHHHHHHHHTCSEEEECGGG
T ss_pred HHHHHHhcCCCeEEEECCCCCHHHHHHHHHhCCChHhhhHHH
Confidence 66665444 7999999999999999999999998754 3443
No 315
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=30.41 E-value=2.3e+02 Score=28.62 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=60.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
.+||.||.--..-...+..+.+..+++++ .+....+..+.+.+. +.+-..+ +- -+.+ ...++-+|+
T Consensus 4 ~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~---~g~~~~~------~~---~~~l-~~~~~D~V~ 70 (344)
T 3euw_A 4 TLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEA---NGAEAVA------SP---DEVF-ARDDIDGIV 70 (344)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHT---TTCEEES------SH---HHHT-TCSCCCEEE
T ss_pred ceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---cCCceeC------CH---HHHh-cCCCCCEEE
Confidence 37899998877666555555444467766 444434433433332 1211111 11 1222 223455555
Q ss_pred Eec--CCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHH
Q 006057 93 LSG--NGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVR 132 (663)
Q Consensus 93 LSA--~~d~e~v~kAl~aGA~DYLlKP--vs~eeL~~~~q~Vlr 132 (663)
++. ....+.+..|+++|..-|+-|| .+.++...+++.+-+
T Consensus 71 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 114 (344)
T 3euw_A 71 IGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGD 114 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGG
T ss_pred EeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHh
Confidence 543 3345678899999999999999 456777776665543
No 316
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=30.35 E-value=38 Score=32.67 Aligned_cols=55 Identities=25% Similarity=0.234 Sum_probs=36.2
Q ss_pred CceEEEEeCCCCCCCH-------HHHHHHHhccC-----CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 60 KFDLVISDVHMPDMDG-------FKLLELVGLEM-----DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG-------~eLLe~Ir~~~-----dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
..|.|+++-..|+..| ++.++.++... ++||++.-+-. .+.+.+++++||+.+.+
T Consensus 140 ~~d~vl~~~~~pg~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v~GGI~-~~n~~~~~~aGad~vvv 206 (230)
T 1rpx_A 140 AVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVG-PKNAYKVIEAGANALVA 206 (230)
T ss_dssp TCSEEEEESSCTTCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEEESSCC-TTTHHHHHHHTCCEEEE
T ss_pred hCCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCC-HHHHHHHHHcCCCEEEE
Confidence 4788888887775443 34455554322 67877655544 56777788999998754
No 317
>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46
Probab=30.00 E-value=1.8e+02 Score=25.38 Aligned_cols=68 Identities=18% Similarity=0.195 Sum_probs=42.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
.+|..||-++...+..+..+...+..+. ...+..+.+..+......+|+|+++.-.. .+--++++.+.
T Consensus 64 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~~~~~~~~ 132 (171)
T 1ws6_A 64 WEAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLAALFGELL 132 (171)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTTHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHHHHHHHHH
Confidence 3599999999988888888876654433 34566665544443223699999984332 22234555443
No 318
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=29.93 E-value=3.2e+02 Score=27.98 Aligned_cols=93 Identities=14% Similarity=0.041 Sum_probs=57.9
Q ss_pred EEEEEeCCHHHHH----HHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006057 16 RVLAVDDDPTCLL----LLETLLRRCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 16 RVLIVDDD~~~r~----iL~~lL~~~gy---~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI 88 (663)
-+||.||+..... .++..-+..+. ....+.+.+++.+.+.. ..|+|.+|-.-|.. --+..+.++ ..+
T Consensus 168 ~~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~a---GaD~I~ld~~~~~~-~k~av~~v~--~~i 241 (286)
T 1x1o_A 168 GILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALEA---GADLILLDNFPLEA-LREAVRRVG--GRV 241 (286)
T ss_dssp CEEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHHH---TCSEEEEESCCHHH-HHHHHHHHT--TSS
T ss_pred ceEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHc---CCCEEEECCCCHHH-HHHHHHHhC--CCC
Confidence 3788888765432 33333334433 23477889999888865 47999999743321 011222222 357
Q ss_pred cEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 89 PVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 89 PVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
|+++ ++--..+.+....+.|++.+-+
T Consensus 242 pi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 242 PLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp CEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred eEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 7765 5656788899999999887654
No 319
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A
Probab=29.85 E-value=2.2e+02 Score=27.95 Aligned_cols=54 Identities=19% Similarity=0.156 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EE-EEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY-HV-TTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy-~V-~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
.+|..+|-++...+.+++.+++.+. .| ....++.+....+......+|+||+|.
T Consensus 109 ~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~ 164 (274)
T 3ajd_A 109 GTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKILLDA 164 (274)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEEEEcC
Confidence 6899999999999999999988775 33 345677665433321134799999994
No 320
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=29.74 E-value=83 Score=31.12 Aligned_cols=82 Identities=13% Similarity=0.176 Sum_probs=51.9
Q ss_pred HHHhCCCEEEEEC---CHHHHHHHHHhcCCCceEEEEeCCCCCCCH-------HHHHHHHhccC-CCcEEEEecCCChHH
Q 006057 33 LLRRCQYHVTTTS---QAITALKLLRENKNKFDLVISDVHMPDMDG-------FKLLELVGLEM-DLPVIMLSGNGDPKL 101 (663)
Q Consensus 33 lL~~~gy~V~tas---dg~EALelLre~k~~pDLVIlDv~MPdmDG-------~eLLe~Ir~~~-dIPVIILSA~~d~e~ 101 (663)
.+++.|..+..+- +..+.++.+... ..+|+|++=..-|+..| ++-+++++... +++|. +.+--..+.
T Consensus 109 ~i~~~G~k~gvalnp~tp~~~~~~~l~~-g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~-VdGGI~~~t 186 (227)
T 1tqx_A 109 EIRDNNLWCGISIKPKTDVQKLVPILDT-NLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQ-VDGGLNIET 186 (227)
T ss_dssp HHHTTTCEEEEEECTTSCGGGGHHHHTT-TCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEE-EESSCCHHH
T ss_pred HHHHcCCeEEEEeCCCCcHHHHHHHhhc-CCcCEEEEeeeccCCCCcccchHHHHHHHHHHHhccCCeEE-EECCCCHHH
Confidence 6677787766443 344555554431 14898887666676665 44455555433 55554 556666789
Q ss_pred HHHHHhcCCceEEeC
Q 006057 102 VMKGITHGACDYLLK 116 (663)
Q Consensus 102 v~kAl~aGA~DYLlK 116 (663)
+.++.++||+-++.-
T Consensus 187 i~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 187 TEISASHGANIIVAG 201 (227)
T ss_dssp HHHHHHHTCCEEEES
T ss_pred HHHHHHcCCCEEEEe
Confidence 999999999987654
No 321
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=29.49 E-value=1.5e+02 Score=30.16 Aligned_cols=106 Identities=9% Similarity=0.123 Sum_probs=60.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
+||.||.--..-...+..+.+..+++++ .+.. .+.+.++.... ...-+..| --++ +. .+++-+|+
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~--~~~~~~~~-------~~~l---l~-~~~~D~V~ 69 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKL--GVEKAYKD-------PHEL---IE-DPNVDAVL 69 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHH--TCSEEESS-------HHHH---HH-CTTCCEEE
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHh--CCCceeCC-------HHHH---hc-CCCCCEEE
Confidence 6888888776655555544443467766 3443 33333333322 11112211 1222 22 23445555
Q ss_pred EecC--CChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 006057 93 LSGN--GDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (663)
Q Consensus 93 LSA~--~d~e~v~kAl~aGA~DYLlKP--vs~eeL~~~~q~Vlrr 133 (663)
++.. ...+.+.+|+++|..-|+-|| .+.++...+++.+-+.
T Consensus 70 i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~ 114 (344)
T 3ezy_A 70 VCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKA 114 (344)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHH
T ss_pred EcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 5433 335678889999999999999 6678887777665443
No 322
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=29.37 E-value=1.4e+02 Score=30.32 Aligned_cols=109 Identities=11% Similarity=0.054 Sum_probs=64.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EEC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCC
Q 006057 12 PSGLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTS-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDL 88 (663)
Q Consensus 12 P~glRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tas-dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dI 88 (663)
-..|||-||--=..-+..+...|... +++|+ .|. +.+.|-+...+. .+.-+..|+ -++ +. .+++
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~--g~~~~y~d~-------~el---l~-~~~i 87 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRF--SVPHAFGSY-------EEM---LA-SDVI 87 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHH--TCSEEESSH-------HHH---HH-CSSC
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc--CCCeeeCCH-------HHH---hc-CCCC
Confidence 33579999998776665555555554 66766 343 344444444432 122233222 222 22 3455
Q ss_pred cEEEEecC--CChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 89 PVIMLSGN--GDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 89 PVIILSA~--~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
-+|+++.. .-.+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 88 DaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 136 (350)
T 4had_A 88 DAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRN 136 (350)
T ss_dssp SEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHH
T ss_pred CEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHc
Confidence 55555443 3467899999999999999995 567777777655443
No 323
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=29.28 E-value=80 Score=31.66 Aligned_cols=54 Identities=20% Similarity=0.221 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCC------HHHHHHHHhccCCCcEEEEecC-CChHHHHHHHhcCCceEEe
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMD------GFKLLELVGLEMDLPVIMLSGN-GDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmD------G~eLLe~Ir~~~dIPVIILSA~-~d~e~v~kAl~aGA~DYLl 115 (663)
.++++.+.+. ..|+|.+-+ -+ .+++++.+|. .++|||+++.. ... ..|++.||+
T Consensus 23 ~~~~~~l~~~--GaD~ielG~----S~Gvt~~~~~~~v~~ir~-~~~Pivlm~y~~n~i-------~~G~dg~ii 83 (240)
T 1viz_A 23 DEQLEILCES--GTDAVIIGG----SDGVTEDNVLRMMSKVRR-FLVPCVLEVSAIEAI-------VPGFDLYFI 83 (240)
T ss_dssp HHHHHHHHTS--CCSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC-------CSCCSEEEE
T ss_pred HHHHHHHHHc--CCCEEEECC----CCCCCHHHHHHHHHHhhC-cCCCEEEecCccccc-------cCCCCEEEE
No 324
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=29.18 E-value=1.3e+02 Score=30.54 Aligned_cols=40 Identities=15% Similarity=0.095 Sum_probs=32.3
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
.+++++++...++||++=.+-...+.+.++ .||+..++--
T Consensus 191 ~~~v~~vr~~~~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGS 230 (271)
T 1ujp_A 191 KDLVRRIKARTALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp HHHHHHHHTTCCSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred HHHHHHHHhhcCCCEEEEcCCCCHHHHHHh--cCCCEEEECh
Confidence 478888887778999887777778888885 9999988753
No 325
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=29.10 E-value=54 Score=30.74 Aligned_cols=77 Identities=22% Similarity=0.189 Sum_probs=43.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCH---HHHHHHHHhcCCCceEEEEeCCC-CCCCH--HHHHHHHhccCCC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQA---ITALKLLRENKNKFDLVISDVHM-PDMDG--FKLLELVGLEMDL 88 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg---~EALelLre~k~~pDLVIlDv~M-PdmDG--~eLLe~Ir~~~dI 88 (663)
++|+|||....+...+.+.|++.|+++..+... ++..+.+... ..+++||.-=-. |...+ .++++.+ ..++
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~~~~~~i~~~l~~~-~~~~iil~gGpg~~~~~~~~~~l~~~~--~~~~ 77 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNHIPAQTLIDRLATM-KNPVLMLSPGPGVPSEAGCMPELLTRL--RGKL 77 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETTSCSHHHHHHHTTC-SSEEEEECCCSSCGGGSTTHHHHHHHH--BTTB
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECCCCHHHHHHHhhhc-cCCeEEECCCCcCchhCchHHHHHHHH--hcCC
Confidence 479999966666777888889999887766544 3333333221 235566652111 11112 2233332 3467
Q ss_pred cEEEEe
Q 006057 89 PVIMLS 94 (663)
Q Consensus 89 PVIILS 94 (663)
||+-+.
T Consensus 78 PilGIC 83 (192)
T 1i1q_B 78 PIIGIC 83 (192)
T ss_dssp CEEEET
T ss_pred CEEEEC
Confidence 887664
No 326
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=29.03 E-value=56 Score=34.81 Aligned_cols=64 Identities=14% Similarity=-0.100 Sum_probs=42.2
Q ss_pred HHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 49 TALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 49 EALelLre~k~~pDLVIlDv~MPdmDG-~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+.++.+.+. .+|+|.+|........ ++.+++++.. +++|||+= .-...+.+..+.++||+...+
T Consensus 103 e~~~~a~~a--GvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 103 QRAEALRDA--GADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp HHHHHHHHT--TCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHc--CCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 344444443 5899999976543222 4567777654 57888761 124567889999999998875
No 327
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=28.95 E-value=4.8e+02 Score=26.56 Aligned_cols=87 Identities=10% Similarity=0.016 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCCEE-EEECCHHHHHHHHHhcCCCceEEEEe---CCCCCCCHHHHHHHHhccC-CCcEEEEecCCChHH
Q 006057 27 LLLLETLLRRCQYHV-TTTSQAITALKLLRENKNKFDLVISD---VHMPDMDGFKLLELVGLEM-DLPVIMLSGNGDPKL 101 (663)
Q Consensus 27 r~iL~~lL~~~gy~V-~tasdg~EALelLre~k~~pDLVIlD---v~MPdmDG~eLLe~Ir~~~-dIPVIILSA~~d~e~ 101 (663)
...|..+-...|.++ +.+.+.+|..+.+.. .+++|=+. +..-..|--...+.+..-+ ++.+|.-|+-...+.
T Consensus 142 l~~l~~~A~~lGl~~LvEVh~~~El~rAl~~---~a~iIGINNRnL~tf~vdl~~t~~L~~~ip~~~~~VsESGI~t~~d 218 (258)
T 4a29_A 142 LESLLEYARSYGMEPLILINDENDLDIALRI---GARFIGIMSRDFETGEINKENQRKLISMIPSNVVKVAKLGISERNE 218 (258)
T ss_dssp HHHHHHHHHHTTCCCEEEESSHHHHHHHHHT---TCSEEEECSBCTTTCCBCHHHHHHHHTTSCTTSEEEEEESSCCHHH
T ss_pred HHHHHHHHHHHhHHHHHhcchHHHHHHHhcC---CCcEEEEeCCCccccccCHHHHHHHHhhCCCCCEEEEcCCCCCHHH
Confidence 344555556678764 578889998777764 46776542 2223334222223333333 566777788889999
Q ss_pred HHHHHhcCCceEEeC
Q 006057 102 VMKGITHGACDYLLK 116 (663)
Q Consensus 102 v~kAl~aGA~DYLlK 116 (663)
+.+...+|++.||+-
T Consensus 219 v~~l~~~G~~a~LVG 233 (258)
T 4a29_A 219 IEELRKLGVNAFLIS 233 (258)
T ss_dssp HHHHHHTTCCEEEEC
T ss_pred HHHHHHCCCCEEEEC
Confidence 999999999999975
No 328
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=28.82 E-value=3e+02 Score=27.56 Aligned_cols=106 Identities=9% Similarity=0.154 Sum_probs=59.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHH-HhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLL-RRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL-~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
..+||.||---..-+..+..+. ...+++++ .+....+..+.+.+. ...+-+.-| - -+.+. ..++-+
T Consensus 7 ~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~-~g~~~~~~~-------~---~~~l~-~~~~D~ 74 (346)
T 3cea_A 7 KPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNE-LGVETTYTN-------Y---KDMID-TENIDA 74 (346)
T ss_dssp CCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHT-TCCSEEESC-------H---HHHHT-TSCCSE
T ss_pred CcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHH-hCCCcccCC-------H---HHHhc-CCCCCE
Confidence 3479999987765555555554 33467755 444444444444332 122222222 1 12232 234555
Q ss_pred EEEecC--CChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHH
Q 006057 91 IMLSGN--GDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHV 130 (663)
Q Consensus 91 IILSA~--~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~V 130 (663)
|+++.. ...+.+.+|+++|..-|+.||+ +.++...+++.+
T Consensus 75 V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a 118 (346)
T 3cea_A 75 IFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVI 118 (346)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHH
T ss_pred EEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHH
Confidence 555443 3457788999999988999995 477776655544
No 329
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=28.82 E-value=1.5e+02 Score=30.56 Aligned_cols=108 Identities=12% Similarity=0.127 Sum_probs=62.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEEE-ECCHHH-HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVTT-TSQAIT-ALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~-~gy~V~t-asdg~E-ALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
.+||.||.--..-+..+..+... .+++++. +....+ +.+..... .+.+... .+--++ +. .+++-+
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~--g~~~~~~------~~~~~l---l~-~~~~D~ 90 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY--AIEAKDY------NDYHDL---IN-DKDVEV 90 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH--TCCCEEE------SSHHHH---HH-CTTCCE
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh--CCCCeee------CCHHHH---hc-CCCCCE
Confidence 46999999887777666666633 4677663 433233 33333321 1111111 111222 22 233444
Q ss_pred EEEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 91 IMLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 91 IILS--A~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
|+++ .....+.+.+|+++|..-|+-||+ +.++...+++.+-+.
T Consensus 91 V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 91 VIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp EEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred EEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 4443 334466788999999999999995 678888877765544
No 330
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=28.79 E-value=1.3e+02 Score=30.55 Aligned_cols=57 Identities=19% Similarity=0.214 Sum_probs=42.6
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe--CCCCHHHHHHHHHHHHH
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL--KPVRIEELKNIWQHVVR 132 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl--KPvs~eeL~~~~q~Vlr 132 (663)
++.++.++...++||+.---.-+...+..|..+||+..++ .-++.+++...++.+.+
T Consensus 102 ~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~~ 160 (272)
T 3qja_A 102 LDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTES 160 (272)
T ss_dssp HHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHHH
Confidence 7788888877889998654444544589999999999987 55667777776665543
No 331
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=28.71 E-value=1.1e+02 Score=24.94 Aligned_cols=46 Identities=15% Similarity=0.138 Sum_probs=34.9
Q ss_pred CCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQ 248 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQ 248 (663)
+..-.||+|-|..|.+++...|-+ . ..|...| |+.-|..+|..+-+
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGKd--f-~~I~~~~-v~~Kt~~~~v~fYY 51 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGKD--F-NDIRQDF-LPWKSLTSIIEYYY 51 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCSC--H-HHHHHTT-CSSSCHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCcc--H-HHHHHHH-cCCCCHHHHHHHHH
Confidence 445679999999999999999854 3 5676633 57888888877553
No 332
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=28.45 E-value=2.1e+02 Score=27.18 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=39.5
Q ss_pred HHHHHHHHHHhCCCEEEEECC---HH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 26 CLLLLETLLRRCQYHVTTTSQ---AI---TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~tasd---g~---EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
+...+++.+++.||.+..+.. .. +.++.+... .+|-||+--..+ -+.++.+. ...+|||++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~----~~~~~~l~-~~~iPvV~i~~~ 94 (276)
T 3jy6_A 25 LFKGISSILESRGYIGVLFDANADIEREKTLLRAIGSR--GFDGLILQSFSN----PQTVQEIL-HQQMPVVSVDRE 94 (276)
T ss_dssp HHHHHHHHHHTTTCEEEEEECTTCHHHHHHHHHHHHTT--TCSEEEEESSCC----HHHHHHHH-TTSSCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhC--CCCEEEEecCCc----HHHHHHHH-HCCCCEEEEecc
Confidence 345566677778998876532 22 345555543 689888754333 45555554 357999988654
No 333
>2fqx_A Membrane lipoprotein TMPC; ABC transport system, ligand-binding protein, guanosine, TP0319, transport protein; HET: GMP; 1.70A {Treponema pallidum} PDB: 2fqw_A* 2fqy_A*
Probab=28.40 E-value=2.4e+02 Score=28.20 Aligned_cols=65 Identities=6% Similarity=0.040 Sum_probs=38.8
Q ss_pred HHHHHHHHHhCCCEEEEEC-----CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 27 LLLLETLLRRCQYHVTTTS-----QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~tas-----dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
.+.+++.++..||.+..+. +..++++.+.+. .+|.||+-- +.. .-.+.+..+..+++|+|++...
T Consensus 26 ~~Gi~~~~~~~g~~~~~~~~~~~~~~~~~l~~l~~~--~~dgIi~~~--~~~-~~~~~~~a~~~p~~p~v~id~~ 95 (318)
T 2fqx_A 26 WEGISRFAQENNAKCKYVTASTDAEYVPSLSAFADE--NMGLVVACG--SFL-VEAVIETSARFPKQKFLVIDAV 95 (318)
T ss_dssp HHHHHHHHHHTTCEEEEEECCSGGGHHHHHHHHHHT--TCSEEEEES--TTT-HHHHHHHHHHCTTSCEEEESSC
T ss_pred HHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHc--CCCEEEECC--hhH-HHHHHHHHHHCCCCEEEEEcCc
Confidence 4567777788899877542 223456655543 689888732 111 1123333344578999998754
No 334
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=28.35 E-value=1.4e+02 Score=27.20 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=39.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
|.+|.++.... ....+...+...+..+..+.+..++++++..+ ++|+++.|.
T Consensus 111 g~~v~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~ 162 (239)
T 1lst_A 111 GKHVGVLQGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTAG--RLDAALQDE 162 (239)
T ss_dssp TCEEEEETTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHTT--SCSEEEEEH
T ss_pred CCEEEEEcCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHcC--CCCEEEeCc
Confidence 67888776655 34455666654578899999999999999865 799999874
No 335
>2akz_A Gamma enolase, neural; fluoride inhibition, negative cooperativity, glycolysis, , isothermal titration calorimetry, lyase; 1.36A {Homo sapiens} SCOP: c.1.11.1 d.54.1.1 PDB: 2akm_A 1te6_A 2psn_A 3b97_A 2xsx_A 1pdz_A 1pdy_A
Probab=28.31 E-value=62 Score=35.15 Aligned_cols=103 Identities=14% Similarity=0.272 Sum_probs=60.2
Q ss_pred eCCHHHHHHHHHHHHhCCC--EEE---EE------------------------CCHHHHHHHHHhcCCCceEEEEeCCCC
Q 006057 21 DDDPTCLLLLETLLRRCQY--HVT---TT------------------------SQAITALKLLRENKNKFDLVISDVHMP 71 (663)
Q Consensus 21 DDD~~~r~iL~~lL~~~gy--~V~---ta------------------------sdg~EALelLre~k~~pDLVIlDv~MP 71 (663)
+++....+.+++.++..|| .|. -+ -+..++++.+.+.-.+++|+.++==++
T Consensus 217 ~~~~e~l~~i~~ai~~~G~~g~v~l~vD~a~se~~~~g~y~l~~~~~~~~~~~~t~~e~~~~~~~ll~~y~i~~IEdPl~ 296 (439)
T 2akz_A 217 LENSEALELVKEAIDKAGYTEKIVIGMDVAASEFYRDGKYDLDFKSPTDPSRYITGDQLGALYQDFVRDYPVVSIEDPFD 296 (439)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEECTTTTSSCCGGGCBCHHHHHHHHHHHHHHSCEEEEECCSC
T ss_pred ccHHHHHHHHHHHHHHcCCccceEEEEechHhhhccCCeeEEeccccccccccCCHHHHHHHHHHHHHhCCCcEEECCCC
Confidence 4556677778888876665 222 11 045666665443212477888866565
Q ss_pred CCCHHHHHHHHhccCCCcEEEEecC---CChHHHHHHHhcCCceE-EeCCCCHHHHHHH
Q 006057 72 DMDGFKLLELVGLEMDLPVIMLSGN---GDPKLVMKGITHGACDY-LLKPVRIEELKNI 126 (663)
Q Consensus 72 dmDG~eLLe~Ir~~~dIPVIILSA~---~d~e~v~kAl~aGA~DY-LlKPvs~eeL~~~ 126 (663)
..| ++-.+.++....+||+ ... .....+.++++.|++++ ++|+-..--|-+.
T Consensus 297 ~dD-~~g~~~L~~~~~ipI~--gDE~~vt~~~~~~~~i~~~a~d~i~iKv~qiGGitea 352 (439)
T 2akz_A 297 QDD-WAAWSKFTANVGIQIV--GDDLTVTNPKRIERAVEEKACNCLLLKVNQIGSVTEA 352 (439)
T ss_dssp TTC-HHHHHHHHHTCSSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECHHHHCCHHHH
T ss_pred ccc-HHHHHHHHhCCCCEEE--eCCCccCCHHHHHHHHHhCCCCEEEechhhcCCHHHH
Confidence 444 4555555554567764 433 25678889999997665 5677443333333
No 336
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=28.25 E-value=3.3e+02 Score=27.60 Aligned_cols=62 Identities=11% Similarity=0.001 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+..+.++.+.+. .+|+|.+....| .++++.++.. .+||+... ...+.+.++.+.|++.++.-
T Consensus 84 ~~~~~~~~~~~~--g~d~V~~~~g~p----~~~~~~l~~~-gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 84 PYAEYRAAIIEA--GIRVVETAGNDP----GEHIAEFRRH-GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp CHHHHHHHHHHT--TCCEEEEEESCC----HHHHHHHHHT-TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cHHHHHHHHHhc--CCCEEEEcCCCc----HHHHHHHHHc-CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 345667776654 689999887765 5777777654 67877543 34567788999999998873
No 337
>3tqp_A Enolase; energy metabolism, lyase; 2.20A {Coxiella burnetii}
Probab=28.18 E-value=64 Score=35.02 Aligned_cols=73 Identities=16% Similarity=0.277 Sum_probs=43.4
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCC---ChHHHHHHHhcCCceE-EeCCCC
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNG---DPKLVMKGITHGACDY-LLKPVR 119 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~---d~e~v~kAl~aGA~DY-LlKPvs 119 (663)
+..+|++++++.-.+++++.++==++..| ++-++.++.....||-++.... ....+.++++.|++++ ++|+-.
T Consensus 264 t~~eai~~~~~ll~~y~i~~IEdPl~~dD-~eg~~~L~~~~~~pI~ivGDel~vt~~~~~~~~i~~~a~d~i~iKv~~ 340 (428)
T 3tqp_A 264 TSEEMIDRLTEWTKKYPVISIEDGLSEND-WAGWKLLTERLENKVQLVGDDIFVTNPDILEKGIKKNIANAILVKLNQ 340 (428)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEECCSCTTC-HHHHHHHHHHHTTTSEEEESTTTTTCHHHHHHHHHTTCCSEEEECHHH
T ss_pred CHHHHHHHHHHHHhhcccceEeCCCCccc-HHHHHHHHHhcCCCcceeccccccCCHHHHHHHHHhCCCCEEEecccc
Confidence 56788877765112578888865555443 3444444443344654444331 5667888999887665 566643
No 338
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=28.16 E-value=1.2e+02 Score=32.53 Aligned_cols=57 Identities=21% Similarity=0.250 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhC------CCE---E-EEECCHHHHHHHHHhcCCCceEEEEeCCCC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRC------QYH---V-TTTSQAITALKLLRENKNKFDLVISDVHMP 71 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~------gy~---V-~tasdg~EALelLre~k~~pDLVIlDv~MP 71 (663)
-+|-+||=|+.+.+..++.|... ..+ | +...|+.+-++...+...+||+||+|+.-+
T Consensus 229 ~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~ 295 (381)
T 3c6k_A 229 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAV 295 (381)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSS
T ss_pred ceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCceeEEEECCCCC
Confidence 47888999998888888876421 111 3 356788887776544445799999998543
No 339
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=28.06 E-value=1.5e+02 Score=26.48 Aligned_cols=49 Identities=27% Similarity=0.281 Sum_probs=38.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
.|.+|.++..... ..+|+..+..+..+.+..+++.++..+ ++|+++++.
T Consensus 111 ~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l~~g--~~D~~~~~~ 159 (228)
T 2pyy_A 111 PGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKALQTK--KADAVVFDA 159 (228)
T ss_dssp TTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred CCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHHHcC--CCCEEEecH
Confidence 4778888877653 344555688899999999999999865 799999874
No 340
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=27.71 E-value=1.1e+02 Score=30.82 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=56.6
Q ss_pred CcEEEEEeCCHHHHH-HHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLL-LLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~-iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.+||.||.--..-+. .+..+....+++++ .+....+..+.+.+. ..+. .-+.++.+ . .++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~-~g~~---------~~~~~~~l---~--~~~D~V 69 (319)
T 1tlt_A 5 KLRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICES-WRIP---------YADSLSSL---A--ASCDAV 69 (319)
T ss_dssp CEEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHH-HTCC---------BCSSHHHH---H--TTCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHH-cCCC---------ccCcHHHh---h--cCCCEE
Confidence 378999987665554 34444333466765 443222222222221 0111 11223322 2 345555
Q ss_pred EEecCC--ChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 006057 92 MLSGNG--DPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA~~--d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlr 132 (663)
+++... ..+.+..|+++|..-|+.||+ +.++...+++.+-+
T Consensus 70 ~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 70 FVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp EECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred EEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 555433 356788899999988999995 57777776665443
No 341
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=27.70 E-value=2e+02 Score=30.26 Aligned_cols=65 Identities=22% Similarity=0.202 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmDG-~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.+.++.+.+. .+|+|.+|....+... ++.++.++...++|||+-. -...+.+.++.++||+...+
T Consensus 107 ~e~a~~l~ea--Gad~I~ld~a~G~~~~~~~~i~~i~~~~~~~Vivg~-v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 107 IERAKLLVEA--GVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGN-VVTEEATKELIENGADGIKV 172 (361)
T ss_dssp HHHHHHHHHT--TCSEEEECCSCCSBHHHHHHHHHHHHHCCCEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHc--CcCeEEEeCCCCCcHHHHHHHHHHHHhcCCcEEEcc-CCCHHHHHHHHHcCcCEEEE
Confidence 4444444432 5899998876543322 3566666665578888622 24567889999999988876
No 342
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=27.67 E-value=1.1e+02 Score=28.64 Aligned_cols=64 Identities=8% Similarity=0.042 Sum_probs=41.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~-dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+..++...+.. ..|+|-..-. ..-|.+.++.++... ++||+...+-. .+.+.+++.+||+.+..
T Consensus 113 t~~e~~~a~~~---Gad~vk~~~~--~~~g~~~~~~l~~~~~~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 113 TPTELVKAMKL---GHTILKLFPG--EVVGPQFVKAMKGPFPNVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp SHHHHHHHHHT---TCCEEEETTH--HHHHHHHHHHHHTTCTTCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHc---CCCEEEEcCc--cccCHHHHHHHHHhCCCCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 45666555543 4676654311 113677887776544 78988776665 56788999999998754
No 343
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=27.54 E-value=2.5e+02 Score=25.79 Aligned_cols=67 Identities=16% Similarity=0.285 Sum_probs=45.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQY--HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy--~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
+|.+.+|..||-++...+..++.+...+. .|. ...++.+.+.. ... ||+|++|... .+-..+++.+.
T Consensus 78 ~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~---~~~-fD~v~~~~~~--~~~~~~l~~~~ 147 (210)
T 3c3p_A 78 ISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG---QRD-IDILFMDCDV--FNGADVLERMN 147 (210)
T ss_dssp SCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT---CCS-EEEEEEETTT--SCHHHHHHHHG
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc---CCC-CCEEEEcCCh--hhhHHHHHHHH
Confidence 45467999999999999988888877664 233 45666554332 224 9999999643 34455666553
No 344
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=27.49 E-value=2.4e+02 Score=26.26 Aligned_cols=89 Identities=12% Similarity=0.098 Sum_probs=50.0
Q ss_pred HHhCCCEE-EEECCHHHHHHHHHh-cCCCceEEEEeCCCCCCCHHHHHHHHhcc-C-CCcEEEEecCCChHHHHHHHhcC
Q 006057 34 LRRCQYHV-TTTSQAITALKLLRE-NKNKFDLVISDVHMPDMDGFKLLELVGLE-M-DLPVIMLSGNGDPKLVMKGITHG 109 (663)
Q Consensus 34 L~~~gy~V-~tasdg~EALelLre-~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~-dIPVIILSA~~d~e~v~kAl~aG 109 (663)
|...+.-+ ....+.+++.++++. ....+++|-+.+..| ++.+.++.++.. + ++ +|.+..-.+.+.+..+.+.|
T Consensus 7 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~~--~~~~~i~~ir~~~~~~~-~ig~~~v~~~~~~~~a~~~G 83 (205)
T 1wa3_A 7 FKKHKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTVP--DADTVIKELSFLKEKGA-IIGAGTVTSVEQCRKAVESG 83 (205)
T ss_dssp HHHHCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTST--THHHHHHHTHHHHHTTC-EEEEESCCSHHHHHHHHHHT
T ss_pred HhhCCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCCh--hHHHHHHHHHHHCCCCc-EEEecccCCHHHHHHHHHcC
Confidence 44444332 234456665554432 112577776655554 567777777654 2 33 33343334677889999999
Q ss_pred CceEEeCCCCHHHHHHH
Q 006057 110 ACDYLLKPVRIEELKNI 126 (663)
Q Consensus 110 A~DYLlKPvs~eeL~~~ 126 (663)
|+.. .-|.-..++...
T Consensus 84 ad~i-v~~~~~~~~~~~ 99 (205)
T 1wa3_A 84 AEFI-VSPHLDEEISQF 99 (205)
T ss_dssp CSEE-ECSSCCHHHHHH
T ss_pred CCEE-EcCCCCHHHHHH
Confidence 9877 666554444443
No 345
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=27.44 E-value=1.8e+02 Score=28.92 Aligned_cols=104 Identities=9% Similarity=0.082 Sum_probs=61.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh-CCCEEE-EECCHHH-HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRR-CQYHVT-TTSQAIT-ALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPV 90 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~-~gy~V~-tasdg~E-ALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPV 90 (663)
.+||.||.--..-+..+...|.. .+++++ .+....+ +.+..... .... -.+--+++ . ++-+
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--~~~~--------~~~~~~ll---~---~~D~ 69 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDY--RIMP--------FDSIESLA---K---KCDC 69 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHH--TCCB--------CSCHHHHH---T---TCSE
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHc--CCCC--------cCCHHHHH---h---cCCE
Confidence 47899998887766544454544 467776 4443333 33333322 1110 11222233 2 3444
Q ss_pred EEEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 91 IMLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 91 IILS--A~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
|+++ .....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 70 V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (308)
T 3uuw_A 70 IFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTKK 116 (308)
T ss_dssp EEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHH
T ss_pred EEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 4443 334466788999999999999996 678888877765543
No 346
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.96 E-value=1.2e+02 Score=24.15 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=38.1
Q ss_pred CCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhcCCCCCCHHHHHHhhhhhHhhhh
Q 006057 199 KPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLMNVEKLTRENVASHLQKYRLYLK 255 (663)
Q Consensus 199 k~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~v~~LT~~~VaSHLQkyRlyl~ 255 (663)
..+-.||+|-..+.+.+|..+|..+ =+.|...| ++-|..++..+ |..||+
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~~~--W~~Ia~~l--~~Rt~~qcr~R---w~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGKNQ--WSRIASLL--HRKSAKQCKAR---WYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCSSC--HHHHHHHS--TTCCHHHHHHH---HHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCC--HHHHHHHh--cCCCHHHHHHH---HHHHcC
Confidence 4567899999999999999999543 25677777 58888888874 444665
No 347
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=26.52 E-value=1e+02 Score=29.84 Aligned_cols=13 Identities=31% Similarity=0.411 Sum_probs=10.4
Q ss_pred CCcEEEEEeCCHH
Q 006057 13 SGLRVLAVDDDPT 25 (663)
Q Consensus 13 ~glRVLIVDDD~~ 25 (663)
.|.|||+||-|+.
T Consensus 54 ~g~~VlliD~D~~ 66 (267)
T 3k9g_A 54 KNNKVLLIDMDTQ 66 (267)
T ss_dssp TTSCEEEEEECTT
T ss_pred CCCCEEEEECCCC
Confidence 4789999998864
No 348
>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*
Probab=26.46 E-value=1.2e+02 Score=32.12 Aligned_cols=88 Identities=22% Similarity=0.106 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhCCCEEE--EECCHHHHHHHHHhcCCCceEEEEeCCCC-----CCCHHHHHHHHhccCCCcEEEEecCCC
Q 006057 26 CLLLLETLLRRCQYHVT--TTSQAITALKLLRENKNKFDLVISDVHMP-----DMDGFKLLELVGLEMDLPVIMLSGNGD 98 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~--tasdg~EALelLre~k~~pDLVIlDv~MP-----dmDG~eLLe~Ir~~~dIPVIILSA~~d 98 (663)
..+.++.+-+..+..|. -+...++|..++.. ..|.|++.-+-. ....++++..++....+|||.-.+-..
T Consensus 213 ~~~~i~~i~~~~~~Pv~vkgv~t~e~a~~a~~a---Gad~I~vs~~gg~~~d~~~~~~~~l~~v~~~~~~pVia~GGI~~ 289 (380)
T 1p4c_A 213 NWEALRWLRDLWPHKLLVKGLLSAEDADRCIAE---GADGVILSNHGGRQLDCAISPMEVLAQSVAKTGKPVLIDSGFRR 289 (380)
T ss_dssp CHHHHHHHHHHCCSEEEEEEECCHHHHHHHHHT---TCSEEEECCGGGTSCTTCCCGGGTHHHHHHHHCSCEEECSSCCS
T ss_pred cHHHHHHHHHhcCCCEEEEecCcHHHHHHHHHc---CCCEEEEcCCCCCcCCCCcCHHHHHHHHHHHcCCeEEEECCCCC
Confidence 34667777777676654 46788888877764 588888743211 111255666665444569998888888
Q ss_pred hHHHHHHHhcCCceEEeC
Q 006057 99 PKLVMKGITHGACDYLLK 116 (663)
Q Consensus 99 ~e~v~kAl~aGA~DYLlK 116 (663)
...+.+++.+||+...+-
T Consensus 290 ~~dv~kal~~GAdaV~iG 307 (380)
T 1p4c_A 290 GSDIVKALALGAEAVLLG 307 (380)
T ss_dssp HHHHHHHHHTTCSCEEES
T ss_pred HHHHHHHHHhCCcHhheh
Confidence 889999999999886543
No 349
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=26.36 E-value=56 Score=32.87 Aligned_cols=60 Identities=13% Similarity=0.175 Sum_probs=40.3
Q ss_pred HHHHHHHhcCCCceEEEEeCCCC--CCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 49 TALKLLRENKNKFDLVISDVHMP--DMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 49 EALelLre~k~~pDLVIlDv~MP--dmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
++++.+.+ ...|+|++-.... ..+-++++++++. .++|||++.... ..+..||+.||.--
T Consensus 27 ~~l~~~~~--~GtDaI~vGgs~gvt~~~~~~~v~~ik~-~~~Piil~p~~~------~~~~~gaD~il~ps 88 (235)
T 3w01_A 27 DDLDAICM--SQTDAIMIGGTDDVTEDNVIHLMSKIRR-YPLPLVLEISNI------ESVMPGFDFYFVPT 88 (235)
T ss_dssp HHHHHHHT--SSCSEEEECCSSCCCHHHHHHHHHHHTT-SCSCEEEECCCS------TTCCTTCSEEEEEE
T ss_pred HHHHHHHH--cCCCEEEECCcCCcCHHHHHHHHHHhcC-cCCCEEEecCCH------HHhhcCCCEEEEcc
Confidence 34444433 2589999876432 2235677788887 899999998854 23466999998763
No 350
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=26.33 E-value=1.2e+02 Score=29.27 Aligned_cols=65 Identities=14% Similarity=0.121 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhCCCEEEEEC--C---HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCC
Q 006057 26 CLLLLETLLRRCQYHVTTTS--Q---AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNG 97 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~tas--d---g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~ 97 (663)
+...+++.+++.||.+..+. . ..+.++.+.. ..+|-||+--..+ +. +.++.+.. .+|||++....
T Consensus 29 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiIi~~~~~--~~-~~~~~~~~--~iPvV~i~~~~ 98 (289)
T 3k9c_A 29 LVEQIYAAATRRGYDVMLSAVAPSRAEKVAVQALMR--ERCEAAILLGTRF--DT-DELGALAD--RVPALVVARAS 98 (289)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEBTTBCHHHHHHHHTT--TTEEEEEEETCCC--CH-HHHHHHHT--TSCEEEESSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHh--CCCCEEEEECCCC--CH-HHHHHHHc--CCCEEEEcCCC
Confidence 44556777778899877543 1 3445555544 3689888743222 22 56665543 89999886543
No 351
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=26.19 E-value=1.4e+02 Score=32.87 Aligned_cols=64 Identities=11% Similarity=0.034 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmD-G~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+.|..++.. .+|+|.+|...+... -+++++.++.. +++|||+- .-...+.+..+.++||+...+
T Consensus 234 ~~a~~l~~a---G~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g-~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 234 ERVKALVEA---GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGG-NVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp HHHHHHHHT---TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHhc---cCceEEeccccccchHHHHHHHHHHHHCCCceEEEc-ccCcHHHHHHHHHhCCCEEEE
Confidence 344444432 599999999877543 34677777655 48898873 234567888999999998875
No 352
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Probab=26.09 E-value=3.6e+02 Score=31.57 Aligned_cols=108 Identities=11% Similarity=0.159 Sum_probs=69.4
Q ss_pred cEEEEEeCCH----------HHHHHHHHHHHhCCC--EEEEEC---C---HHHHHHHHHhcCCCceEEEEeCCCCCCCHH
Q 006057 15 LRVLAVDDDP----------TCLLLLETLLRRCQY--HVTTTS---Q---AITALKLLRENKNKFDLVISDVHMPDMDGF 76 (663)
Q Consensus 15 lRVLIVDDD~----------~~r~iL~~lL~~~gy--~V~tas---d---g~EALelLre~k~~pDLVIlDv~MPdmDG~ 76 (663)
++++||.+.+ .....++.++++.+. .|.... + ..+....+.. ..|++++--. -+.-|+
T Consensus 604 v~LvIvG~g~~~~~~~~e~~~~~~~L~~li~~lgL~~~V~flG~~~~~v~~~eL~~~~~~---aaDvfV~PS~-~Egfgl 679 (816)
T 3s28_A 604 ANLVVVGGDRRKESKDNEEKAEMKKMYDLIEEYKLNGQFRWISSQMDRVRNGELYRYICD---TKGAFVQPAL-YEAFGL 679 (816)
T ss_dssp CEEEEECCCTTSCCCCHHHHHHHHHHHHHHHHTTCBBBEEEECCCCCHHHHHHHHHHHHH---TTCEEEECCS-CBSSCH
T ss_pred eEEEEEeCCCcccccchhhHHHHHHHHHHHHHcCCCCcEEEccCccccCCHHHHHHHHHh---cCeEEEECCC-ccCccH
Confidence 5677776655 255667777776653 355443 2 2444455543 2477776332 244566
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 77 eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
.+++.+. ..+|||+ |.. ....+.+..|.++++..|-+.++|..++..++.
T Consensus 680 vllEAMA--~G~PVIa-sd~---GG~~EiV~dg~~Gllv~p~D~e~LA~aI~~lL~ 729 (816)
T 3s28_A 680 TVVEAMT--CGLPTFA-TCK---GGPAEIIVHGKSGFHIDPYHGDQAADTLADFFT 729 (816)
T ss_dssp HHHHHHH--TTCCEEE-ESS---BTHHHHCCBTTTBEEECTTSHHHHHHHHHHHHH
T ss_pred HHHHHHH--cCCCEEE-eCC---CChHHHHccCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 7776653 5689886 332 234556678899999999999999999988774
No 353
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=25.92 E-value=1.5e+02 Score=28.80 Aligned_cols=57 Identities=9% Similarity=0.145 Sum_probs=35.9
Q ss_pred HHHHHHHHhcC--CCceEEEEeCC-----CCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHH
Q 006057 48 ITALKLLRENK--NKFDLVISDVH-----MPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMK 104 (663)
Q Consensus 48 ~EALelLre~k--~~pDLVIlDv~-----MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~k 104 (663)
..++..+++.- ..+||||+|-- +.-.+--++++.+...+.---||+|+......+.+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHH
Confidence 33444444422 57999999963 23345556778887766655666788777665544
No 354
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=25.90 E-value=1.9e+02 Score=29.25 Aligned_cols=101 Identities=13% Similarity=0.090 Sum_probs=59.3
Q ss_pred CcEEEEE-eCCHHHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEE-eCCCC---C-----CCHHHHHH
Q 006057 14 GLRVLAV-DDDPTCLLLLETLLRRCQYHVT-TTS--QAITALKLLRENKNKFDLVIS-DVHMP---D-----MDGFKLLE 80 (663)
Q Consensus 14 glRVLIV-DDD~~~r~iL~~lL~~~gy~V~-tas--dg~EALelLre~k~~pDLVIl-Dv~MP---d-----mDG~eLLe 80 (663)
|...+|| |-.......+...+++.|..+. .+. ...+-++.+.+....| |.+ .+ ++ . .+-.++++
T Consensus 123 Gvdgvii~Dlp~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~gf--vY~vS~-~GvTG~~~~~~~~~~~~v~ 199 (267)
T 3vnd_A 123 GVDSVLIADVPVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGEGY--TYLLSR-AGVTGTESKAGEPIENILT 199 (267)
T ss_dssp TCCEEEETTSCGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCCSC--EEESCC-CCCC--------CHHHHHH
T ss_pred CCCEEEeCCCCHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCCCc--EEEEec-CCCCCCccCCcHHHHHHHH
Confidence 3444444 3333345566777777776543 222 2334455444432223 333 22 11 1 12246677
Q ss_pred HHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 81 LVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 81 ~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
+++...++||++=.+-...+.+.+++..||+++++--
T Consensus 200 ~vr~~~~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 200 QLAEFNAPPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp HHHTTTCCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHhcCCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 7777778999876666678888889999999998875
No 355
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=25.89 E-value=2e+02 Score=28.58 Aligned_cols=57 Identities=19% Similarity=0.201 Sum_probs=38.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhC-----CCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRC-----QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~-----gy~V-~tasdg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
...+|.+||-++...+..++.+... .-.| ....++.+.+... ...+|+||+|...|.
T Consensus 101 ~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~---~~~fD~Ii~d~~~~~ 163 (283)
T 2i7c_A 101 SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV---TNTYDVIIVDSSDPI 163 (283)
T ss_dssp TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC---CSCEEEEEEECCCTT
T ss_pred CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC---CCCceEEEEcCCCCC
Confidence 3568999999999888888877542 1122 3456766654322 347999999986553
No 356
>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*
Probab=25.74 E-value=3e+02 Score=29.06 Aligned_cols=87 Identities=14% Similarity=-0.048 Sum_probs=56.9
Q ss_pred HHHHHHHHHHhCCCEEEE--E---CCHHHHHHHHHhcCCCceEEEEeCCCCCCC--------------------------
Q 006057 26 CLLLLETLLRRCQYHVTT--T---SQAITALKLLRENKNKFDLVISDVHMPDMD-------------------------- 74 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~t--a---sdg~EALelLre~k~~pDLVIlDv~MPdmD-------------------------- 74 (663)
..+.|+.+.+..+..|.. + -+.++|..+... .+|.|.+.-+ .+..
T Consensus 175 ~~~~i~~i~~~~~vPVivK~vG~g~s~~~A~~l~~a---Gad~I~V~g~-GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~ 250 (368)
T 3vkj_A 175 ALEKLRDISKELSVPIIVKESGNGISMETAKLLYSY---GIKNFDTSGQ-GGTNWIAIEMIRDIRRGNWKAESAKNFLDW 250 (368)
T ss_dssp HHHHHHHHHTTCSSCEEEECSSSCCCHHHHHHHHHT---TCCEEECCCB-TSBCHHHHHHHHHHHTTCTHHHHHHHTTTC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHhC---CCCEEEEeCC-CCCcccchhhhhcccccccchhhccccccc
Confidence 556677766666665554 2 366777766653 5898888665 3311
Q ss_pred ---HHHHHHHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 75 ---GFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 75 ---G~eLLe~Ir~-~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
....+..++. ..++|||.-.+-.....+.+++.+||+...+-
T Consensus 251 g~pt~~~l~~v~~~~~~ipvia~GGI~~~~d~~kal~lGA~~v~ig 296 (368)
T 3vkj_A 251 GVPTAASIMEVRYSVPDSFLVGSGGIRSGLDAAKAIALGADIAGMA 296 (368)
T ss_dssp SCBHHHHHHHHHHHSTTCEEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred cccHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 1122333332 23689998888888899999999999987654
No 357
>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4
Probab=25.66 E-value=88 Score=31.31 Aligned_cols=85 Identities=11% Similarity=-0.033 Sum_probs=51.9
Q ss_pred HHHHHHHH---hCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeC-CC----CCCCHHH-HHHHHhc-cCCCcEEEEecC
Q 006057 28 LLLETLLR---RCQYHVT-TTSQAITALKLLRENKNKFDLVISDV-HM----PDMDGFK-LLELVGL-EMDLPVIMLSGN 96 (663)
Q Consensus 28 ~iL~~lL~---~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv-~M----PdmDG~e-LLe~Ir~-~~dIPVIILSA~ 96 (663)
..+++++. ..|..+. .+.+.+|+.+.+... .|+|=+.. .+ ++.+.+. +++.+.. ..++|+|..++-
T Consensus 141 ~~l~~l~~~a~~lGl~~lvev~~~~E~~~a~~~g---ad~IGvn~~~l~~~~~dl~~~~~L~~~i~~~~~~~~vIAegGI 217 (254)
T 1vc4_A 141 ELTGAYLEEARRLGLEALVEVHTERELEIALEAG---AEVLGINNRDLATLHINLETAPRLGRLARKRGFGGVLVAESGY 217 (254)
T ss_dssp GGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHT---CSEEEEESBCTTTCCBCTTHHHHHHHHHHHTTCCSEEEEESCC
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcC---CCEEEEccccCcCCCCCHHHHHHHHHhCccccCCCeEEEEcCC
Confidence 34555554 5577654 567788877666543 57664422 11 2223322 2222211 016899998888
Q ss_pred CChHHHHHHHhcCCceEEeC
Q 006057 97 GDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 97 ~d~e~v~kAl~aGA~DYLlK 116 (663)
...+.+.++.. ||+.+++-
T Consensus 218 ~s~~dv~~l~~-Ga~gvlVG 236 (254)
T 1vc4_A 218 SRKEELKALEG-LFDAVLIG 236 (254)
T ss_dssp CSHHHHHTTTT-TCSEEEEC
T ss_pred CCHHHHHHHHc-CCCEEEEe
Confidence 88999999999 99999763
No 358
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=25.47 E-value=4.6e+02 Score=27.16 Aligned_cols=113 Identities=11% Similarity=0.093 Sum_probs=64.0
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHhcCCCce-EEEEeCCCCCCCHHHHHHHHh-c
Q 006057 13 SGLRVLAVDDDP---TCLLLLETLLRRCQYHVTT-T-S-QAITALKLLRENKNKFD-LVISDVHMPDMDGFKLLELVG-L 84 (663)
Q Consensus 13 ~glRVLIVDDD~---~~r~iL~~lL~~~gy~V~t-a-s-dg~EALelLre~k~~pD-LVIlDv~MPdmDG~eLLe~Ir-~ 84 (663)
..+||.||.--. .-+..+..+....+++++. + . +.+.|.+...+.. -+. -+ -.|--++++.-+ .
T Consensus 11 ~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g-~~~~~~-------~~~~~~ll~~~~~~ 82 (398)
T 3dty_A 11 QPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLG-VDSERC-------YADYLSMFEQEARR 82 (398)
T ss_dssp SCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTT-CCGGGB-------CSSHHHHHHHHTTC
T ss_pred CcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhC-CCccee-------eCCHHHHHhccccc
Confidence 458999998775 4444444444333577664 3 3 3444444444321 010 01 123334444321 1
Q ss_pred cCCCcEEEEec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 85 EMDLPVIMLSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 85 ~~dIPVIILSA--~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
.+++-+|+++. ....+.+.+|+++|..=|+-||+ +.++...+++.+-+.
T Consensus 83 ~~~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 135 (398)
T 3dty_A 83 ADGIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHKH 135 (398)
T ss_dssp TTCCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 13455554443 34467899999999999999995 677888877765543
No 359
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=25.43 E-value=1.5e+02 Score=30.56 Aligned_cols=55 Identities=13% Similarity=0.172 Sum_probs=38.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC---EE-EEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY---HV-TTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy---~V-~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
+.+|..||-++...+..++.++..+. .+ ....++.+.+..+......||+||+|.
T Consensus 175 ga~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dP 233 (332)
T 2igt_A 175 GAEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIILTDP 233 (332)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEEECC
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEEECC
Confidence 34899999999998888888876553 13 355677776654332234799999985
No 360
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9
Probab=25.24 E-value=3.5e+02 Score=23.73 Aligned_cols=109 Identities=14% Similarity=0.030 Sum_probs=49.7
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHHhCCCEEEEECCHH--HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-CCCc
Q 006057 14 GLRVLAVDDD-PTCLLLLETLLRRCQYHVTTTSQAI--TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-MDLP 89 (663)
Q Consensus 14 glRVLIVDDD-~~~r~iL~~lL~~~gy~V~tasdg~--EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-~dIP 89 (663)
|.+|.+||.+ +...+.+...+. .++.+... ++. +.++.. .-...|+||+-+.-.. .-..++...+.. +..+
T Consensus 26 g~~V~vid~~~~~~~~~~~~~~~-~~~~~i~g-d~~~~~~l~~a--~i~~ad~vi~~~~~d~-~n~~~~~~a~~~~~~~~ 100 (153)
T 1id1_A 26 GQNVTVISNLPEDDIKQLEQRLG-DNADVIPG-DSNDSSVLKKA--GIDRCRAILALSDNDA-DNAFVVLSAKDMSSDVK 100 (153)
T ss_dssp TCCEEEEECCCHHHHHHHHHHHC-TTCEEEES-CTTSHHHHHHH--TTTTCSEEEECSSCHH-HHHHHHHHHHHHTSSSC
T ss_pred CCCEEEEECCChHHHHHHHHhhc-CCCeEEEc-CCCCHHHHHHc--ChhhCCEEEEecCChH-HHHHHHHHHHHHCCCCE
Confidence 4567777765 333333333322 24554432 221 223222 1235788887553211 112223333433 5667
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHH
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVR 132 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlr 132 (663)
||+.....+ ........|++..+ -| .......+...+.
T Consensus 101 ii~~~~~~~--~~~~l~~~G~~~vi-~p--~~~~~~~l~~~~~ 138 (153)
T 1id1_A 101 TVLAVSDSK--NLNKIKMVHPDIIL-SP--QLFGSEILARVLN 138 (153)
T ss_dssp EEEECSSGG--GHHHHHTTCCSEEE-CH--HHHHHHHHHHHHT
T ss_pred EEEEECCHH--HHHHHHHcCCCEEE-cH--HHHHHHHHHHHHh
Confidence 776554333 33444568888554 33 2333344444443
No 361
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=24.97 E-value=3.3e+02 Score=28.01 Aligned_cols=82 Identities=7% Similarity=-0.117 Sum_probs=54.1
Q ss_pred HHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE-----eCCC----CCCCHHHHHHHHhccCCCcEEEEecCCC
Q 006057 28 LLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS-----DVHM----PDMDGFKLLELVGLEMDLPVIMLSGNGD 98 (663)
Q Consensus 28 ~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIl-----Dv~M----PdmDG~eLLe~Ir~~~dIPVIILSA~~d 98 (663)
..|.++++ |-.+..+.+.+.|..+-... .-.|.++ |+.- ..+..++.++.++..-.+||+.......
T Consensus 14 ~~~~~~~k--ggv~~d~~~~e~A~~ye~~G--A~~lsvLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~ 89 (297)
T 4adt_A 14 HGWCEMLK--GGVIMDVKNVEQAKIAEKAG--AIGVMILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGH 89 (297)
T ss_dssp HHHHHTTT--TCEEEEESSHHHHHHHHHHT--CSEEEECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTC
T ss_pred HhHHHHhc--CCcccCCCcHHHHHHHHHcC--CCEEEEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCc
Confidence 34444443 56677888888886555443 3345555 5542 2245799999999888999997655555
Q ss_pred hHHHHHHHhcCCceE
Q 006057 99 PKLVMKGITHGACDY 113 (663)
Q Consensus 99 ~e~v~kAl~aGA~DY 113 (663)
...+..+..+||+..
T Consensus 90 ide~qil~aaGAD~I 104 (297)
T 4adt_A 90 FVEAQILEELKVDML 104 (297)
T ss_dssp HHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHcCCCEE
Confidence 677777788999876
No 362
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=24.90 E-value=1e+02 Score=30.58 Aligned_cols=53 Identities=11% Similarity=0.172 Sum_probs=34.1
Q ss_pred HHHHHHHHhccCCCcEEEEecCC--Ch--HHHHHHHhcCCceEEeCCCC--HHHHHHHHHHH
Q 006057 75 GFKLLELVGLEMDLPVIMLSGNG--DP--KLVMKGITHGACDYLLKPVR--IEELKNIWQHV 130 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~~--d~--e~v~kAl~aGA~DYLlKPvs--~eeL~~~~q~V 130 (663)
|..+++.+. ..+|||+..... +. .......+.|. +++..|-+ .++|..++..+
T Consensus 264 ~~~~~EAma--~G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 264 ALTVSEIAA--AGLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp HHHHHHHHH--HTCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred hHHHHHHHH--hCCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 666666553 358988764321 11 11334556777 99999965 99999888765
No 363
>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*
Probab=24.65 E-value=3.2e+02 Score=28.30 Aligned_cols=89 Identities=8% Similarity=0.080 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhCCCEEEE-----EC------CHHHHHHHHHhcCCCceEEEEeCCCCC--CC----------HHHHHH
Q 006057 24 PTCLLLLETLLRRCQYHVTT-----TS------QAITALKLLRENKNKFDLVISDVHMPD--MD----------GFKLLE 80 (663)
Q Consensus 24 ~~~r~iL~~lL~~~gy~V~t-----as------dg~EALelLre~k~~pDLVIlDv~MPd--mD----------G~eLLe 80 (663)
....++++.+-+..+..|+. .. +..+..+.+.+. ..|.|++.-.... .. .+++++
T Consensus 112 ~~~~eiv~av~~~v~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~a--G~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~ 189 (350)
T 3b0p_A 112 ARVREILKAMGEAVRVPVTVKMRLGLEGKETYRGLAQSVEAMAEA--GVKVFVVHARSALLALSTKANREIPPLRHDWVH 189 (350)
T ss_dssp HHHHHHHHHHHHHCSSCEEEEEESCBTTCCCHHHHHHHHHHHHHT--TCCEEEEECSCBC----------CCCCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCceEEEEecCcCccccHHHHHHHHHHHHHc--CCCEEEEecCchhcccCcccccCCCcccHHHHH
Confidence 34455666665556665543 11 122333444443 5787777543211 11 267777
Q ss_pred HHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 81 LVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 81 ~Ir~~~-dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.++... ++|||+-..-.+.+.+.++++ ||+...+
T Consensus 190 ~ik~~~~~iPVianGgI~s~eda~~~l~-GaD~V~i 224 (350)
T 3b0p_A 190 RLKGDFPQLTFVTNGGIRSLEEALFHLK-RVDGVML 224 (350)
T ss_dssp HHHHHCTTSEEEEESSCCSHHHHHHHHT-TSSEEEE
T ss_pred HHHHhCCCCeEEEECCcCCHHHHHHHHh-CCCEEEE
Confidence 777665 899998887788899999998 8877654
No 364
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A*
Probab=24.64 E-value=1.3e+02 Score=30.36 Aligned_cols=71 Identities=24% Similarity=0.253 Sum_probs=0.0
Q ss_pred cEEEEEe----CCHHHHHHHHHHHHhCCCEEEEECC--------------------------------------------
Q 006057 15 LRVLAVD----DDPTCLLLLETLLRRCQYHVTTTSQ-------------------------------------------- 46 (663)
Q Consensus 15 lRVLIVD----DD~~~r~iL~~lL~~~gy~V~tasd-------------------------------------------- 46 (663)
||||++- -+..-...|...|.+.|++|..+..
T Consensus 2 MrIl~~~~~~~gh~~~~~~la~~L~~~GheV~v~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (391)
T 3tsa_A 2 MRVLVVPLPYPTHLMAMVPLCWALQASGHEVLIAAPPELQATAHGAGLTTAGIRGNDRTGDTGGTTQLRFPNPAFGQRDT 81 (391)
T ss_dssp CEEEEECCSCHHHHHTTHHHHHHHHHTTCEEEEEECHHHHHHHHHBTCEEEEC--------------CCSCCGGGGCTTS
T ss_pred cEEEEEcCCCcchhhhHHHHHHHHHHCCCEEEEecChhhHHHHHhCCCceeeecCCccchhhhhhhcccccccccccccc
Q ss_pred ---------------------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEE
Q 006057 47 ---------------------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIML 93 (663)
Q Consensus 47 ---------------------g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIIL 93 (663)
..+..+++++. +||+|++|. +...|.-+.+.++ +|+|.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~PD~Vv~~~--~~~~~~~aa~~~g----iP~v~~ 141 (391)
T 3tsa_A 82 EAGRQLWEQTASNVAQSSLDQLPEYLRLAEAW--RPSVLLVDV--CALIGRVLGGLLD----LPVVLH 141 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEET--TCHHHHHHHHHTT----CCEEEE
T ss_pred hhHHHHHHHHHHHHhhcchhhHHHHHHHHHhc--CCCEEEeCc--chhHHHHHHHHhC----CCEEEE
No 365
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=24.62 E-value=3e+02 Score=27.87 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=60.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.+||.||---..-+..+..+....+++++ .+.. .+.+.+..... .+.. -.|--++++ ..++-+|
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~--g~~~--------~~~~~~~l~----~~~~D~V 70 (354)
T 3db2_A 5 PVGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRY--NCAG--------DATMEALLA----REDVEMV 70 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHH--TCCC--------CSSHHHHHH----CSSCCEE
T ss_pred cceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHc--CCCC--------cCCHHHHhc----CCCCCEE
Confidence 47899998877655544444333377766 4443 33333333321 1110 112222222 2344444
Q ss_pred EEec--CCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 006057 92 MLSG--NGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA--~~d~e~v~kAl~aGA~DYLlKP--vs~eeL~~~~q~Vlrr 133 (663)
+++. ....+.+.+|+++|..-|+-|| .+.++...+++.+-+.
T Consensus 71 ~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~ 116 (354)
T 3db2_A 71 IITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKET 116 (354)
T ss_dssp EECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred EEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHc
Confidence 4433 3446778899999999999999 5578888777765543
No 366
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=24.54 E-value=2.8e+02 Score=25.02 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=37.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EE-EEECCHHHHHHHHHhcCCCceEEEEeCC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY-HV-TTTSQAITALKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy-~V-~tasdg~EALelLre~k~~pDLVIlDv~ 69 (663)
.+|..||-++...+..++.++..+. .+ ....+..+.+..+. ...+|+|++|.-
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~--~~~fD~i~~~~p 122 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT--TSPVDLVLADPP 122 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC--SSCCSEEEECCC
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc--CCCccEEEECCC
Confidence 4799999999999988888877664 33 35667666543321 247999999853
No 367
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=24.52 E-value=3.8e+02 Score=25.62 Aligned_cols=83 Identities=8% Similarity=-0.009 Sum_probs=58.8
Q ss_pred EECCHHHHHHHHHhcCCCceEEEEeCCCCC-CC-HHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEE-----
Q 006057 43 TTSQAITALKLLRENKNKFDLVISDVHMPD-MD-GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYL----- 114 (663)
Q Consensus 43 tasdg~EALelLre~k~~pDLVIlDv~MPd-mD-G~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYL----- 114 (663)
-+.+..|+.+..+. ..|.|-+ .|. .- |.+.++.++.. +++|++.+-+-. .+.+...+.+||+...
T Consensus 110 G~~t~~e~~~A~~~---Gad~v~~---fpa~~~gG~~~lk~l~~~~~~ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai 182 (207)
T 2yw3_A 110 GVLTPTEVERALAL---GLSALKF---FPAEPFQGVRVLRAYAEVFPEVRFLPTGGIK-EEHLPHYAALPNLLAVGGSWL 182 (207)
T ss_dssp EECSHHHHHHHHHT---TCCEEEE---TTTTTTTHHHHHHHHHHHCTTCEEEEBSSCC-GGGHHHHHTCSSBSCEEESGG
T ss_pred cCCCHHHHHHHHHC---CCCEEEE---ecCccccCHHHHHHHHhhCCCCcEEEeCCCC-HHHHHHHHhCCCcEEEEehhh
Confidence 47788898887764 4788876 453 33 88999888654 489998766554 5778899999987753
Q ss_pred eCCCCHHHHHHHHHHHHHh
Q 006057 115 LKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 115 lKPvs~eeL~~~~q~Vlrr 133 (663)
.+ -+++++....+.+++.
T Consensus 183 ~~-~d~~~i~~~a~~~~~~ 200 (207)
T 2yw3_A 183 LQ-GNLEAVRAKVRAAKAL 200 (207)
T ss_dssp GS-SCHHHHHHHHHHHHHH
T ss_pred hC-CCHHHHHHHHHHHHHH
Confidence 33 5566777777766544
No 368
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=24.48 E-value=2e+02 Score=26.67 Aligned_cols=61 Identities=11% Similarity=0.185 Sum_probs=35.2
Q ss_pred CCCCCCcEEEEE--eCC------------HHHHHHHHHHHHhCCCEEE---EECCHHHHHH-HHHh--cCCCceEEEEeC
Q 006057 9 DQFPSGLRVLAV--DDD------------PTCLLLLETLLRRCQYHVT---TTSQAITALK-LLRE--NKNKFDLVISDV 68 (663)
Q Consensus 9 ~~FP~glRVLIV--DDD------------~~~r~iL~~lL~~~gy~V~---tasdg~EALe-lLre--~k~~pDLVIlDv 68 (663)
..-|..+||.|| .|. ......|.++|+..|++|. ++.|..+++. .+++ ....+|+||+-=
T Consensus 10 ~~~~~~~~v~iitvsd~~~~~~~~~g~i~D~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~~a~~~~DlVittG 89 (178)
T 3iwt_A 10 ENAPKSLNFYVITISTSRYEKLLKKEPIVDESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDALSIDEVDVIISTG 89 (178)
T ss_dssp ---CCCCEEEEEEECHHHHHHHHTTCCCCCHHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHHHTCTTCCEEEEES
T ss_pred hcCCCCCEEEEEEEcCCCccccccCCCCCcchHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHhcCCCCEEEecC
Confidence 345777787555 341 2345678999999999875 4556544432 3331 123578888754
Q ss_pred C
Q 006057 69 H 69 (663)
Q Consensus 69 ~ 69 (663)
-
T Consensus 90 G 90 (178)
T 3iwt_A 90 G 90 (178)
T ss_dssp C
T ss_pred C
Confidence 3
No 369
>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}
Probab=24.37 E-value=2.1e+02 Score=28.75 Aligned_cols=81 Identities=10% Similarity=0.215 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCCceEEEEe----CC--CC----CCCHHHHHHHHhccCCCcEEEEecCCCh------HHHHHHHhcCCc
Q 006057 48 ITALKLLRENKNKFDLVISD----VH--MP----DMDGFKLLELVGLEMDLPVIMLSGNGDP------KLVMKGITHGAC 111 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlD----v~--MP----dmDG~eLLe~Ir~~~dIPVIILSA~~d~------e~v~kAl~aGA~ 111 (663)
..|++.++.. ...+++|+. .. -+ ++..+. .+++..++|||+.+.+..- .....|...||+
T Consensus 147 ~~Av~~i~~~-Gn~~i~L~~RG~~~~~~y~~~~v~L~ai~---~lk~~~~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~ 222 (262)
T 1zco_A 147 LYSAEYIMAQ-GNENVILCERGIRTFETATRFTLDISAVP---VVKELSHLPIIVDPSHPAGRRSLVIPLAKAAYAIGAD 222 (262)
T ss_dssp HHHHHHHHTT-TCCCEEEEECCBCCSCCSSSSBCCTTHHH---HHHHHBSSCEEECSSTTTCSGGGHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHC-CCCeEEEEECCCCCCCCcChhhcCHHHHH---HHHhhhCCCEEEEcCCCCCccchHHHHHHHHHHcCCC
Confidence 3455566653 347888887 21 11 223443 4444457899888887532 446668899999
Q ss_pred eEEe-CC-------------CCHHHHHHHHHHHHH
Q 006057 112 DYLL-KP-------------VRIEELKNIWQHVVR 132 (663)
Q Consensus 112 DYLl-KP-------------vs~eeL~~~~q~Vlr 132 (663)
+.++ |- +.+++|+..++.+.+
T Consensus 223 Gl~iE~H~~~d~al~D~~~sl~p~~~~~l~~~i~~ 257 (262)
T 1zco_A 223 GIMVEVHPEPEKALSDSQQQLTFDDFLQLLKELEA 257 (262)
T ss_dssp EEEEEBCSSGGGCSSCTTTCBCHHHHHHHHHHHHH
T ss_pred EEEEEecCCccccCChhhcCCCHHHHHHHHHHHHH
Confidence 7544 33 578899888877643
No 370
>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A
Probab=24.33 E-value=2.9e+02 Score=27.01 Aligned_cols=69 Identities=13% Similarity=0.157 Sum_probs=46.2
Q ss_pred CceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCC--hHH----HHHHHhcCCceEEe-----CCCCHHHHHHHHH
Q 006057 60 KFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGD--PKL----VMKGITHGACDYLL-----KPVRIEELKNIWQ 128 (663)
Q Consensus 60 ~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d--~e~----v~kAl~aGA~DYLl-----KPvs~eeL~~~~q 128 (663)
..|+|.+.. + -+++.++.+.....+|||+..+-.. .+. +.+++++||+++.. +.-++.+....+.
T Consensus 179 Gad~i~~~~--~--~~~~~l~~i~~~~~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l~ 254 (273)
T 2qjg_A 179 GADIVKTSY--T--GDIDSFRDVVKGCPAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAVC 254 (273)
T ss_dssp TCSEEEECC--C--SSHHHHHHHHHHCSSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHHH
T ss_pred CCCEEEECC--C--CCHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHHH
Confidence 589888874 2 4688888776656899999887663 333 66777899998754 3335555555555
Q ss_pred HHHH
Q 006057 129 HVVR 132 (663)
Q Consensus 129 ~Vlr 132 (663)
.+++
T Consensus 255 ~~~~ 258 (273)
T 2qjg_A 255 KIVH 258 (273)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5444
No 371
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=24.13 E-value=1.1e+02 Score=25.90 Aligned_cols=50 Identities=18% Similarity=0.232 Sum_probs=39.1
Q ss_pred eeehhhhHHHHHHHHHhcCCCcchHHHHhhcC--CCCCCHHHHHHhhhhhHhhhhhh
Q 006057 203 VWSVELHRKFVAAVNQLGIDKAVPKKILDLMN--VEKLTRENVASHLQKYRLYLKRI 257 (663)
Q Consensus 203 ~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m~--v~~LT~~~VaSHLQkyRlyl~rl 257 (663)
.||+|-....+++|+.+|.-+= +.|++... .++-|-.+++. +||.++++-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W--~~I~~~~~~~~~~RT~~~lKd---rWrnllk~~ 53 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRW--RDVKMRAFDNADHRTYVDLKD---KWKTLVHTA 53 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCH--HHHHHHHCTTCTTSCHHHHHH---HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCc--HHHHHhhccccCCCCHHHHHH---HHHHHHHhc
Confidence 4999999999999999997442 45666421 47899999998 888888753
No 372
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*
Probab=24.09 E-value=2.3e+02 Score=29.44 Aligned_cols=54 Identities=28% Similarity=0.298 Sum_probs=40.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
.+|..||-++...+..+.-++..+. ....+.++.+.+..+......||+|++|.
T Consensus 232 ~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dp 287 (382)
T 1wxx_A 232 REVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 287 (382)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCCeeEEEECC
Confidence 4799999999998888888877664 23456788777665543334799999985
No 373
>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A
Probab=24.00 E-value=3.3e+02 Score=30.25 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=53.3
Q ss_pred HHHHHHHHHhcCCCceEEEE-eCCCCCC-C--HHHHHHHHhccCCCcEEEEecCCChHHHHHHHh-cCCceEEe------
Q 006057 47 AITALKLLRENKNKFDLVIS-DVHMPDM-D--GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGIT-HGACDYLL------ 115 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIl-Dv~MPdm-D--G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~-aGA~DYLl------ 115 (663)
..+..+.+.+. .++.||+ |+.-.++ . -+++++.++....+|||.-..-.+.+.+.++++ .|+++.+.
T Consensus 454 ~~e~a~~~~~~--Ga~~il~t~~~~dG~~~G~d~~li~~l~~~~~iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~ 531 (555)
T 1jvn_A 454 VWELTRACEAL--GAGEILLNCIDKDGSNSGYDLELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR 531 (555)
T ss_dssp HHHHHHHHHHT--TCCEEEECCGGGTTTCSCCCHHHHHHHHHHCSSCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred HHHHHHHHHHc--CCCEEEEeCCCCCCCCCCCCHHHHHHHHHhCCccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence 34444444432 3565554 5532221 2 378888888777899998777788899999998 79998754
Q ss_pred CCCCHHHHHHHH
Q 006057 116 KPVRIEELKNIW 127 (663)
Q Consensus 116 KPvs~eeL~~~~ 127 (663)
.++...+++..+
T Consensus 532 ~~~~~~e~~~~l 543 (555)
T 1jvn_A 532 GEFTVNDVKEYL 543 (555)
T ss_dssp TSCCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 478888887754
No 374
>2an1_A Putative kinase; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, transferase; 2.00A {Salmonella typhimurium}
Probab=23.98 E-value=1.5e+02 Score=29.63 Aligned_cols=98 Identities=18% Similarity=0.176 Sum_probs=56.9
Q ss_pred cEEEEEeCC-----HHHHHHHHHHHHhCCCEEEEECCHHHH----------HHHHHhcCCCceEEEEeCCCCCCCHH--H
Q 006057 15 LRVLAVDDD-----PTCLLLLETLLRRCQYHVTTTSQAITA----------LKLLRENKNKFDLVISDVHMPDMDGF--K 77 (663)
Q Consensus 15 lRVLIVDDD-----~~~r~iL~~lL~~~gy~V~tasdg~EA----------LelLre~k~~pDLVIlDv~MPdmDG~--e 77 (663)
.||+||-.. ......+.+.|++.|++|.......+. .+.+.+ .+|+||+ -+.||- +
T Consensus 6 kki~ii~np~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~D~vi~----~GGDGT~l~ 78 (292)
T 2an1_A 6 KCIGIVGHPRHPTALTTHEMLYRWLCDQGYEVIVEQQIAHELQLKNVPTGTLAEIGQ---QADLAVV----VGGDGNMLG 78 (292)
T ss_dssp CEEEEECC-------CHHHHHHHHHHHTTCEEEEEHHHHHHTTCSSCCEECHHHHHH---HCSEEEE----CSCHHHHHH
T ss_pred cEEEEEEcCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcccccccccchhhccc---CCCEEEE----EcCcHHHHH
Confidence 367777431 123455777788889998765433222 112222 4799987 577873 2
Q ss_pred HHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 78 LLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 78 LLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
+++.+.. .++|++-+- .|-.+||.. +.++++..+++.++++.
T Consensus 79 a~~~~~~-~~~P~lGI~-------------~Gt~gfla~-~~~~~~~~al~~i~~g~ 120 (292)
T 2an1_A 79 AARTLAR-YDINVIGIN-------------RGNLGFLTD-LDPDNALQQLSDVLEGR 120 (292)
T ss_dssp HHHHHTT-SSCEEEEBC-------------SSSCCSSCC-BCTTSHHHHHHHHHTTC
T ss_pred HHHHhhc-CCCCEEEEE-------------CCCcccCCc-CCHHHHHHHHHHHHcCC
Confidence 3333322 357877663 355666664 34677778888877654
No 375
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=23.86 E-value=2.3e+02 Score=29.09 Aligned_cols=108 Identities=14% Similarity=0.186 Sum_probs=61.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~-gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.+||.||.--..-...+...|... +++++ .+....+..+.+.+.-..+. +. .|--++++ .+++-+|
T Consensus 5 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~-~~-------~~~~~ll~----~~~vD~V 72 (359)
T 3m2t_A 5 LIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIP-VL-------DNVPAMLN----QVPLDAV 72 (359)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCC-EE-------SSHHHHHH----HSCCSEE
T ss_pred cceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCc-cc-------CCHHHHhc----CCCCCEE
Confidence 479999998876665333444444 67766 44433333333332100111 11 12222332 2344555
Q ss_pred EEec--CCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 006057 92 MLSG--NGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA--~~d~e~v~kAl~aGA~DYLlKP--vs~eeL~~~~q~Vlrr 133 (663)
++.. ....+.+.+|+++|..-|+-|| .+.++...+++.+-+.
T Consensus 73 ~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~~ 118 (359)
T 3m2t_A 73 VMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARRS 118 (359)
T ss_dssp EECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHc
Confidence 5543 3345678899999999999999 4677888777665443
No 376
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=23.81 E-value=2.4e+02 Score=30.73 Aligned_cols=54 Identities=24% Similarity=0.319 Sum_probs=30.8
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHHhCCCEEEEE---CCH----HHHHHHHHhcCCCceEEEEeCC
Q 006057 14 GLRVLAVDDDPT---CLLLLETLLRRCQYHVTTT---SQA----ITALKLLRENKNKFDLVISDVH 69 (663)
Q Consensus 14 glRVLIVDDD~~---~r~iL~~lL~~~gy~V~ta---sdg----~EALelLre~k~~pDLVIlDv~ 69 (663)
|.+|++|+.|+. ..+.|+.+-+..+..+... .+. .++++.++.. .+|+||+|.-
T Consensus 128 G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~~~--~~DvVIIDTa 191 (443)
T 3dm5_A 128 GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFKSK--GVDIIIVDTA 191 (443)
T ss_dssp TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHHHT--TCSEEEEECC
T ss_pred CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHHhC--CCCEEEEECC
Confidence 567888886642 3334444444556655533 232 3445555432 5999999963
No 377
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=23.77 E-value=64 Score=30.48 Aligned_cols=43 Identities=16% Similarity=0.182 Sum_probs=32.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEE
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVIS 66 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIl 66 (663)
+|+|||=-.-....+.+.|++.|++++.+.+.++. . .+|.||+
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l----~----~~D~lil 46 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV----L----AADKLFL 46 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH----H----HCSEEEE
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH----h----CCCEEEE
Confidence 69999865555667888899999999988876542 2 2677776
No 378
>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*
Probab=23.75 E-value=2e+02 Score=29.85 Aligned_cols=40 Identities=13% Similarity=0.108 Sum_probs=31.2
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.+++++.+++...+|||....-.+.+.+.++++.|.+|++
T Consensus 276 ~~~~~~~ir~~~~iPVi~~Ggi~t~e~a~~~l~~G~aD~V 315 (349)
T 3hgj_A 276 QVPFADAVRKRVGLRTGAVGLITTPEQAETLLQAGSADLV 315 (349)
T ss_dssp THHHHHHHHHHHCCEEEECSSCCCHHHHHHHHHTTSCSEE
T ss_pred cHHHHHHHHHHcCceEEEECCCCCHHHHHHHHHCCCceEE
Confidence 4567788877668999887766788999999999965554
No 379
>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*
Probab=23.74 E-value=2.9e+02 Score=28.35 Aligned_cols=40 Identities=13% Similarity=0.152 Sum_probs=31.9
Q ss_pred HHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEE
Q 006057 75 GFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYL 114 (663)
Q Consensus 75 G~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYL 114 (663)
.+++++.+++..++|||......+.+.+.++++.|.+|++
T Consensus 265 ~~~~~~~ir~~~~iPVi~~Ggi~s~~~a~~~l~~G~aD~V 304 (338)
T 1z41_A 265 QVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLI 304 (338)
T ss_dssp THHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEE
T ss_pred hHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHcCCceEE
Confidence 4677888877668999988777789999999999955543
No 380
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=23.67 E-value=1.3e+02 Score=30.01 Aligned_cols=54 Identities=7% Similarity=-0.007 Sum_probs=45.0
Q ss_pred eEEEEeCCCCCCCHHHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 62 DLVISDVHMPDMDGFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 62 DLVIlDv~MPdmDG~eLLe~Ir~~~-dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
.+|.+|. .....-.++++++++.. ++||++=-+-.+.+.+.++++ ||+..++--
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS 219 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLDKARLFYGGGIDSREKAREMLR-YADTIIVGN 219 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCSSSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCCCCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence 8899988 65555678999888777 899998888888899999888 999988765
No 381
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=23.66 E-value=2.9e+02 Score=28.35 Aligned_cols=106 Identities=13% Similarity=0.075 Sum_probs=61.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~t-asdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
.+||.||.--..-+..+..+....+++++. +....+..+.... +.+-. -.|--++++ .+++-+|+
T Consensus 5 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~----~g~~~------~~~~~~ll~----~~~~D~V~ 70 (359)
T 3e18_A 5 KYQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQ----KGLKI------YESYEAVLA----DEKVDAVL 70 (359)
T ss_dssp CEEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHT----TTCCB------CSCHHHHHH----CTTCCEEE
T ss_pred cCcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHh----cCCce------eCCHHHHhc----CCCCCEEE
Confidence 478999998776665555443333677764 4433333343332 22111 012222322 23455555
Q ss_pred Eec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 93 LSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 93 LSA--~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
++. ....+.+.+|+++|..-|+-||+ +.++...+++.+-+.
T Consensus 71 i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 115 (359)
T 3e18_A 71 IATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRV 115 (359)
T ss_dssp ECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHH
T ss_pred EcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHh
Confidence 543 33466788999999999999994 677888877766543
No 382
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=23.65 E-value=68 Score=29.87 Aligned_cols=77 Identities=10% Similarity=0.112 Sum_probs=45.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEe-CCCCCCCHHHHHHHHhc--cCCCcEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISD-VHMPDMDGFKLLELVGL--EMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlD-v~MPdmDG~eLLe~Ir~--~~dIPVI 91 (663)
|.|+|||-.......+...|++.|+.+..+.... .++.+.. ..+|.||+- -.-|+..+. +.+.++. ..++||+
T Consensus 1 mmi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~-~~~~~~~--~~~dglil~Gg~~~~~~~~-~~~~i~~~~~~~~Pil 76 (189)
T 1wl8_A 1 MMIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTT-PLEEIKA--MNPKGIIFSGGPSLENTGN-CEKVLEHYDEFNVPIL 76 (189)
T ss_dssp CEEEEEECSCTTHHHHHHHHHHTTCEEEEEETTC-CHHHHHH--TCCSEEEECCCSCTTCCTT-HHHHHHTGGGTCSCEE
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCeEEEEECCC-ChHHhcc--cCCCEEEECCCCChhhhhh-HHHHHHHHhhCCCeEE
Confidence 3599999887677788999999999887665432 2223332 257877762 212222231 2333432 3568988
Q ss_pred EEec
Q 006057 92 MLSG 95 (663)
Q Consensus 92 ILSA 95 (663)
-+..
T Consensus 77 GIC~ 80 (189)
T 1wl8_A 77 GICL 80 (189)
T ss_dssp EETH
T ss_pred EEcH
Confidence 7753
No 383
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=23.61 E-value=1.8e+02 Score=31.67 Aligned_cols=66 Identities=15% Similarity=0.093 Sum_probs=44.9
Q ss_pred HHHHHHHHHhcCCCceEEEEeCCCCCCCH-HHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 47 AITALKLLRENKNKFDLVISDVHMPDMDG-FKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 47 g~EALelLre~k~~pDLVIlDv~MPdmDG-~eLLe~Ir~~~-dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
..+.++.+.+. .+|+|.+|........ +++++.++... ++|||+-.. ...+.+.++.++||+.+.+
T Consensus 256 ~~~~a~~~~~a--G~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 256 DKYRLDLLTQA--GVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp HHHHHHHHHHT--TCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred hHHHHHHHHHc--CCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 34444444442 6899999887644433 47788777654 889886333 4567888999999988765
No 384
>2qai_A V-type ATP synthase subunit F; VATF_pyrfu, ATPF, NESG, structural genomics, PSI-2, protein structure initiative; 2.40A {Pyrococcus furiosus}
Probab=23.59 E-value=3.7e+02 Score=23.75 Aligned_cols=67 Identities=15% Similarity=0.337 Sum_probs=38.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CCH----HH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh--c
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTT-SQA----IT---ALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG--L 84 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~ta-sdg----~E---ALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir--~ 84 (663)
|||.||-| +.....++ -.|.....+ .+. ++ +++.+.+. ..+.||++.- .+.+.++ .
T Consensus 1 MKIaVIGD-~Dtv~GFr----LaGi~~~~v~~~~~t~~ee~~~~~~~l~~~-~digIIlIte--------~ia~~i~~~~ 66 (111)
T 2qai_A 1 MKIVVMGD-SDTVVGFR----LAGVHEAYEYDESLESVERARNKLRELLER-DDVGIILITE--------RLAQRIGSLP 66 (111)
T ss_dssp CEEEEEEC-HHHHHHHH----HHTCSEEEECCSSHHHHHHHHHHHHHHHTC-TTEEEEEEEH--------HHHHHHCSCC
T ss_pred CEEEEEEC-HHHHHHHH----HcCCceEEEecCCCCCHHHHHHHHHHHhhC-CCeEEEEEcH--------HHHhhccccc
Confidence 68899988 43333322 225554444 444 44 44444432 3688888864 3566776 5
Q ss_pred cCCCcEEEEec
Q 006057 85 EMDLPVIMLSG 95 (663)
Q Consensus 85 ~~dIPVIILSA 95 (663)
..+.|+|+.-.
T Consensus 67 ~i~~P~IleIP 77 (111)
T 2qai_A 67 EVKFPIILQIP 77 (111)
T ss_dssp CCSSSEEEEEC
T ss_pred ccCCCEEEEEC
Confidence 55689877544
No 385
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=23.37 E-value=1.1e+02 Score=31.38 Aligned_cols=95 Identities=11% Similarity=-0.019 Sum_probs=0.0
Q ss_pred EEEEeCCHHH----HHHHHHHHHhCCC---EEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCc
Q 006057 17 VLAVDDDPTC----LLLLETLLRRCQY---HVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLP 89 (663)
Q Consensus 17 VLIVDDD~~~----r~iL~~lL~~~gy---~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIP 89 (663)
|||-|++-.. ...++.+-+..++ ..+.+.+.+++.+.+... .|+|++|- |...+--++.+.++....-.
T Consensus 166 vlikdnHi~~~G~i~~av~~ar~~~~~~~~I~VEV~tleea~eA~~aG---aD~I~LDn-~~~e~l~~av~~l~~~~~~v 241 (285)
T 1o4u_A 166 VMIKDNHLKMYGSAERAVQEVRKIIPFTTKIEVEVENLEDALRAVEAG---ADIVMLDN-LSPEEVKDISRRIKDINPNV 241 (285)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHTTSCTTSCEEEEESSHHHHHHHHHTT---CSEEEEES-CCHHHHHHHHHHHHHHCTTS
T ss_pred EEEchhHHhhcCCHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHHcC---CCEEEECC-CCHHHHHHHHHHhhccCCCc
Q ss_pred EEEEecCCChHHHHHHHhcCCceEEe
Q 006057 90 VIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 90 VIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.|..++--..+.+....+.|++.+-+
T Consensus 242 ~ieASGGIt~eni~~~a~tGVD~Isv 267 (285)
T 1o4u_A 242 IVEVSGGITEENVSLYDFETVDVISS 267 (285)
T ss_dssp EEEEEECCCTTTGGGGCCTTCCEEEE
T ss_pred eEEEECCCCHHHHHHHHHcCCCEEEE
No 386
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}
Probab=23.34 E-value=1.8e+02 Score=30.32 Aligned_cols=54 Identities=19% Similarity=0.311 Sum_probs=40.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC---EE-EEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY---HV-TTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy---~V-~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
-+|..||-++...+..++-++..+. .+ ..+.++.+.+..+......||+||+|.
T Consensus 244 ~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dp 301 (396)
T 3c0k_A 244 SQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDP 301 (396)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCCCEEEECC
Confidence 4899999999999988888887665 34 356788777665543234799999984
No 387
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=23.27 E-value=4.2e+02 Score=27.75 Aligned_cols=112 Identities=13% Similarity=-0.014 Sum_probs=61.9
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEE-E-C-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh-ccC
Q 006057 14 GLRVLAVDDDP---TCLLLLETLLRRCQYHVTT-T-S-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG-LEM 86 (663)
Q Consensus 14 glRVLIVDDD~---~~r~iL~~lL~~~gy~V~t-a-s-dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir-~~~ 86 (663)
.+||.||.--. .-...+..+....+++++. + . +.+.|.+...+.....+-+ -.|--++++.-. ..+
T Consensus 37 ~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~-------~~~~~~ll~~~~~~~~ 109 (417)
T 3v5n_A 37 RIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRV-------YSDFKEMAIREAKLKN 109 (417)
T ss_dssp CEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGB-------CSCHHHHHHHHHHCTT
T ss_pred cceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccc-------cCCHHHHHhcccccCC
Confidence 47999998776 4444444443333467653 3 3 3444444443321000001 123334444321 114
Q ss_pred CCcEEEEec--CCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHH
Q 006057 87 DLPVIMLSG--NGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVR 132 (663)
Q Consensus 87 dIPVIILSA--~~d~e~v~kAl~aGA~DYLlKP--vs~eeL~~~~q~Vlr 132 (663)
++-+|+++. ....+.+.+|+++|..=|+-|| .+.++...+++.+-+
T Consensus 110 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 110 GIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADE 159 (417)
T ss_dssp CCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 455555543 3446788999999999999999 467888877766544
No 388
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=23.05 E-value=2.7e+02 Score=29.48 Aligned_cols=65 Identities=14% Similarity=0.041 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCC-CHHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDM-DGFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdm-DG~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
.+.++.+.+. .+|+|.+|..-... .-++.+++++.. +++|||+-+. ...+.+.++.++||+....
T Consensus 110 ~~~~~~liea--Gvd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v-~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 110 EERVKALVEA--GVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNV-ATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp HHHHHHHHHT--TCSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHhC--CCCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeee-CCHHHHHHHHHcCCCEEEE
Confidence 4445544443 58999998743222 234556667654 4788876332 4567888999999998887
No 389
>3lkv_A Uncharacterized conserved domain protein; ATPase binding cassette, PSI, MCSG, structural genomics, Pro structure initiative; HET: PHE; 2.20A {Vibrio cholerae}
Probab=22.82 E-value=95 Score=30.97 Aligned_cols=103 Identities=12% Similarity=0.085 Sum_probs=55.9
Q ss_pred CCCCCcEEEEEeCCH-----HHHHHHHHHHHhCCCEEEEE--C---CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 006057 10 QFPSGLRVLAVDDDP-----TCLLLLETLLRRCQYHVTTT--S---QAITALKLLRENKNKFDLVISDVHMPDMDGFKLL 79 (663)
Q Consensus 10 ~FP~glRVLIVDDD~-----~~r~iL~~lL~~~gy~V~ta--s---dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLL 79 (663)
.+|..-+|.|+-|.. ...+.+++.+...|+++... . +..+++..+. .+.|+|++..+---...++.+
T Consensus 136 l~P~~k~vgvi~~~~~~~s~~~~~~~~~~~~~~g~~~v~~~~~~~~~~~~~~~~l~---~~~d~i~~~~d~~~~~~~~~i 212 (302)
T 3lkv_A 136 ILPNVKSIGVVYNPGEANAVSLMELLKLSAAKHGIKLVEATALKSADVQSATQAIA---EKSDVIYALIDNTVASAIEGM 212 (302)
T ss_dssp HSTTCCEEEEEECTTCHHHHHHHHHHHHHHHHTTCEEEEEECSSGGGHHHHHHHHH---TTCSEEEECSCHHHHHTHHHH
T ss_pred hCCCCCEEEEEeCCCcccHHHHHHHHHHHHHHcCCEEEEEecCChHHHHHHHHhcc---CCeeEEEEeCCcchhhHHHHH
Confidence 357777887775542 34556777777888887633 2 3344444443 368998875421111223344
Q ss_pred HHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHH
Q 006057 80 ELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKN 125 (663)
Q Consensus 80 e~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~ 125 (663)
..+.....+||+... .. .+..|+..=+. ++..++-.
T Consensus 213 ~~~~~~~~iPv~~~~----~~----~v~~G~l~~~~--~~~~~~G~ 248 (302)
T 3lkv_A 213 IVAANQAKTPVFGAA----TS----YVERGAIASLG--FDYYQIGV 248 (302)
T ss_dssp HHHHHHTTCCEEESS----HH----HHHTTCSEEEE--CCHHHHHH
T ss_pred HHHHhhcCCceeecc----cc----cccCCceEEEe--cCHHHHHH
Confidence 444455678886422 22 34567653222 35555543
No 390
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}
Probab=22.68 E-value=2.4e+02 Score=29.14 Aligned_cols=78 Identities=13% Similarity=0.087 Sum_probs=47.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcC------------CCceEEEEeCCCCCCCHHHHHH
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENK------------NKFDLVISDVHMPDMDGFKLLE 80 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy-~V~-tasdg~EALelLre~k------------~~pDLVIlDv~MPdmDG~eLLe 80 (663)
-+|+.||-++...+..++-++..+. .+. .+.++.+.+..+.... ..||+||+|---.+.. -++++
T Consensus 236 ~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~g~~-~~~~~ 314 (369)
T 3bt7_A 236 DRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRSGLD-SETEK 314 (369)
T ss_dssp SEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTTCCC-HHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCccccH-HHHHH
Confidence 4899999999988888888877664 333 4567776665443211 2699999984211111 24556
Q ss_pred HHhccCCCcEEEEec
Q 006057 81 LVGLEMDLPVIMLSG 95 (663)
Q Consensus 81 ~Ir~~~dIPVIILSA 95 (663)
.++ +.-.||+++.
T Consensus 315 ~l~--~~g~ivyvsc 327 (369)
T 3bt7_A 315 MVQ--AYPRILYISC 327 (369)
T ss_dssp HHT--TSSEEEEEES
T ss_pred HHh--CCCEEEEEEC
Confidence 664 2234455543
No 391
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=22.65 E-value=2.3e+02 Score=30.00 Aligned_cols=63 Identities=13% Similarity=0.104 Sum_probs=39.1
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHH
Q 006057 15 LRVLAVDDDPT-----CLLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLE 80 (663)
Q Consensus 15 lRVLIVDDD~~-----~r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe 80 (663)
-|||||-|+.. ..+.+...|+..++.+..+. ...++++.+++. .+|+||- +.+..-+++.+
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~--~~D~IIa---vGGGsviD~AK 118 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKE--KVEAVLG---VGGGSVVDSAK 118 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHT--TCSEEEE---EESHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhc--CCCEEEE---eCChhHHHHHH
Confidence 58999977443 24556777777787766553 234555666654 6798874 34555566666
Q ss_pred HH
Q 006057 81 LV 82 (663)
Q Consensus 81 ~I 82 (663)
.+
T Consensus 119 ~i 120 (407)
T 1vlj_A 119 AV 120 (407)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 392
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=22.59 E-value=2.9e+02 Score=28.69 Aligned_cols=107 Identities=17% Similarity=0.130 Sum_probs=60.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh--------CCCEEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRR--------CQYHVT-TTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~--------~gy~V~-tasd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
.|||-||--=..-+..+..+.+. .+.+|+ .|.. .+.|-+...+. ...-+..| --++ +.
T Consensus 26 klrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~--~~~~~y~d-------~~~l---l~ 93 (412)
T 4gqa_A 26 RLNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKL--GAEKAYGD-------WREL---VN 93 (412)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHH--TCSEEESS-------HHHH---HH
T ss_pred cceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHc--CCCeEECC-------HHHH---hc
Confidence 47999998765544434333321 134555 3443 33343343332 12223322 1222 22
Q ss_pred ccCCCcEEEEec--CCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 006057 84 LEMDLPVIMLSG--NGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (663)
Q Consensus 84 ~~~dIPVIILSA--~~d~e~v~kAl~aGA~DYLlKP--vs~eeL~~~~q~Vlrr 133 (663)
.+++-+|+++. ..-.+.+.+|+++|..=|+-|| .+.++...+++.+-+.
T Consensus 94 -~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~ 146 (412)
T 4gqa_A 94 -DPQVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARRA 146 (412)
T ss_dssp -CTTCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHHH
T ss_pred -CCCCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHHh
Confidence 34455555543 3346789999999999999999 4678888887765443
No 393
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=22.31 E-value=2.5e+02 Score=25.96 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=43.3
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC-EEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQY-HVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy-~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
+|..||-++...+..++.++..+. .+. ...+..+.+. .....||+|++|.-....+.-++++.+.
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~---~~~~~fD~V~~~~p~~~~~~~~~l~~l~ 145 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLA---QKGTPHNIVFVDPPFRRGLLEETINLLE 145 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHS---SCCCCEEEEEECCSSSTTTHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHh---hcCCCCCEEEECCCCCCCcHHHHHHHHH
Confidence 899999999999999988887765 343 4456555332 1224699999985433334445666553
No 394
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1
Probab=22.25 E-value=3.5e+02 Score=27.50 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=31.2
Q ss_pred HHHHHHhccC--CCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 77 KLLELVGLEM--DLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 77 eLLe~Ir~~~--dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
++++.+++.- ++|||...+-.+.+.+.+++..||+...+
T Consensus 277 ~~i~~i~~~~~~~ipVi~~GGI~~~~da~~~l~~GAd~V~i 317 (336)
T 1f76_A 277 EIIRRLSLELNGRLPIIGVGGIDSVIAAREKIAAGASLVQI 317 (336)
T ss_dssp HHHHHHHHHHTTSSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHCCCCEEEe
Confidence 5666665543 79999999999999999999999876643
No 395
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=22.23 E-value=2.6e+02 Score=28.88 Aligned_cols=105 Identities=10% Similarity=0.140 Sum_probs=57.6
Q ss_pred cEEEEEeCC-HHHHHHHHHHHHhCCCEEEE-EC-CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 15 LRVLAVDDD-PTCLLLLETLLRRCQYHVTT-TS-QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 15 lRVLIVDDD-~~~r~iL~~lL~~~gy~V~t-as-dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
+||.||--- ..-...+..+....+++++. +. +.+.+.+...+. .+. +. .|--++++ .+++-+|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~--g~~-~~-------~~~~ell~----~~~vD~V 68 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEY--GIP-VF-------ATLAEMMQ----HVQMDAV 68 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHH--TCC-EE-------SSHHHHHH----HSCCSEE
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHc--CCC-eE-------CCHHHHHc----CCCCCEE
Confidence 688888877 43333444444334666653 33 233333333322 111 11 12223332 2344454
Q ss_pred EEec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 92 MLSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA--~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
+++. ....+.+.+|+++|..-|+-||+ +.++...+++.+-+.
T Consensus 69 ~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~ 114 (387)
T 3moi_A 69 YIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVERA 114 (387)
T ss_dssp EECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHHH
T ss_pred EEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHHh
Confidence 4443 33456788999999999999995 577887777665443
No 396
>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}
Probab=22.19 E-value=3.1e+02 Score=25.97 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 25 TCLLLLETLLRRCQYHVTTTS---QAI---TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 25 ~~r~iL~~lL~~~gy~V~tas---dg~---EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
.+...++..+++.||.+..+. +.. +.++.+... .+|.||+-... .+. +.++.+.....+|||++...
T Consensus 38 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~--~~~-~~~~~l~~~~~iPvV~~~~~ 110 (296)
T 3brq_A 38 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPRF--LSV-DEIDDIIDAHSQPIMVLNRR 110 (296)
T ss_dssp HHHHHHHHHHHHTTCEEEEECCTTSHHHHHHHHHHHHHT--TCSEEEEECSS--SCH-HHHHHHHHTCSSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCCHHHHHHHHHHHHhc--CCCEEEEecCC--CCh-HHHHHHHhcCCCCEEEEccc
Confidence 356677778888899987664 222 234444443 68877764322 222 44454533257999988643
No 397
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=22.15 E-value=1.4e+02 Score=27.07 Aligned_cols=55 Identities=22% Similarity=0.289 Sum_probs=42.8
Q ss_pred CCCCceeeehhhhHHHHHHHHHhcCCCcchHHHHhhc--CCCCCCHHHHHHhhhhhHhhhhh
Q 006057 197 QKKPRVVWSVELHRKFVAAVNQLGIDKAVPKKILDLM--NVEKLTRENVASHLQKYRLYLKR 256 (663)
Q Consensus 197 ~kk~rv~Wt~eLh~kFv~av~~LG~dkA~pk~Ile~m--~v~~LT~~~VaSHLQkyRlyl~r 256 (663)
.++.|..||.|--...+++|+.+|.-+= +.|++.+ ..++-|-.+++. |||.++++
T Consensus 27 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W--~~I~~~~~~~~~~RT~vdlKd---RWrnllk~ 83 (122)
T 2roh_A 27 QRRIRRPFTVAEVELLVEAVEHLGTGRW--RDVKFRAFENVHHRTYVDLKD---KWKTLVHT 83 (122)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHSSSCH--HHHHHHHHSSSCCCCHHHHHH---HHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCCCCh--HHHHHHhccccCCCCHHHHHH---HHHHHHhh
Confidence 4567889999999999999999997442 3565543 237889999987 88888875
No 398
>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}
Probab=22.10 E-value=2.1e+02 Score=27.75 Aligned_cols=66 Identities=12% Similarity=0.049 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CH---HHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 25 TCLLLLETLLRRCQYHVTTTS---QA---ITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 25 ~~r~iL~~lL~~~gy~V~tas---dg---~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
.+...+++.+++.||.+..+. +. .+.++.+... .+|-||+--..+.. -+.++.+.. .+|||++...
T Consensus 32 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiI~~~~~~~~--~~~~~~l~~--~iPvV~i~~~ 103 (303)
T 3kke_A 32 DMFSGVQMAASGHSTDVLLGQIDAPPRGTQQLSRLVSEG--RVDGVLLQRREDFD--DDMLAAVLE--GVPAVTINSR 103 (303)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECCSTTHHHHHHHHHHHSC--SSSEEEECCCTTCC--HHHHHHHHT--TSCEEEESCC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCcEEEEecCCCCc--HHHHHHHhC--CCCEEEECCc
Confidence 355667778888899877553 22 2345555543 68977774322221 115555554 8999988654
No 399
>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1
Probab=22.04 E-value=2.3e+02 Score=30.65 Aligned_cols=40 Identities=25% Similarity=0.187 Sum_probs=29.4
Q ss_pred HHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 77 KLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 77 eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
..+..+....++|||.=.+-.....+.+|+.+||+....-
T Consensus 318 ~~~~~~~~~~~vpVia~GGi~~~~di~kalalGA~~v~~g 357 (486)
T 2cu0_A 318 AMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLG 357 (486)
T ss_dssp HHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHcCCcEEecCCCCCHHHHHHHHHcCCCceeeC
Confidence 3334443334789998778888889999999999986543
No 400
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=22.00 E-value=2.5e+02 Score=27.05 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=39.2
Q ss_pred HHHHHHHHHHhCCCEEEEECC-----HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 26 CLLLLETLLRRCQYHVTTTSQ-----AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~tasd-----g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
+...+++.+++.||.+..+.. ..+.++.+... .+|-||+--..... +.++.+. ...+|||++...
T Consensus 28 ~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~l~~~--~vdGiIi~~~~~~~---~~~~~l~-~~~iPvV~~~~~ 97 (294)
T 3qk7_A 28 MISWIGIELGKRGLDLLLIPDEPGEKYQSLIHLVETR--RVDALIVAHTQPED---FRLQYLQ-KQNFPFLALGRS 97 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECTTCCCHHHHHHHHHT--CCSEEEECSCCSSC---HHHHHHH-HTTCCEEEESCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChhhHHHHHHHHHcC--CCCEEEEeCCCCCh---HHHHHHH-hCCCCEEEECCC
Confidence 455566777788998775432 23456666654 68887774332222 4455443 246899988654
No 401
>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}
Probab=22.00 E-value=3.8e+02 Score=28.01 Aligned_cols=78 Identities=17% Similarity=0.166 Sum_probs=45.1
Q ss_pred HHhCCCEEEE-E--CCHHHHHHHHHhcCCCceEEEEeCCC-------CCCCHHHHHHHHhccCCCcEEEEecCCChHHHH
Q 006057 34 LRRCQYHVTT-T--SQAITALKLLRENKNKFDLVISDVHM-------PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVM 103 (663)
Q Consensus 34 L~~~gy~V~t-a--sdg~EALelLre~k~~pDLVIlDv~M-------PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~ 103 (663)
++..++.+.. + .+..+..+.+.+. .+|+|.++..- |.. .++.++++++...+|||+ -.-...+.+.
T Consensus 151 ~~~~g~~v~~~v~~~~~~e~a~~~~~a--gad~i~i~~~~~~~~~~~~~~-~~~~i~~l~~~~~~pvi~-ggi~t~e~a~ 226 (393)
T 2qr6_A 151 VRDSGEIVAVRVSPQNVREIAPIVIKA--GADLLVIQGTLISAEHVNTGG-EALNLKEFIGSLDVPVIA-GGVNDYTTAL 226 (393)
T ss_dssp HHHTTSCCEEEECTTTHHHHHHHHHHT--TCSEEEEECSSCCSSCCCC------CHHHHHHHCSSCEEE-ECCCSHHHHH
T ss_pred HhhcCCeEEEEeCCccHHHHHHHHHHC--CCCEEEEeCCccccccCCCcc-cHHHHHHHHHhcCCCEEE-CCcCCHHHHH
Confidence 3344665442 2 2233333444332 57888887421 111 233355666666899987 4445677899
Q ss_pred HHHhcCCceEEe
Q 006057 104 KGITHGACDYLL 115 (663)
Q Consensus 104 kAl~aGA~DYLl 115 (663)
+++++||+...+
T Consensus 227 ~~~~~Gad~i~v 238 (393)
T 2qr6_A 227 HMMRTGAVGIIV 238 (393)
T ss_dssp HHHTTTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 999999998877
No 402
>2pa6_A Enolase; glycolysis, lyase, magnesium, metal-binding, structural GENO NPPSFA; 1.85A {Methanocaldococcus jannaschii}
Probab=21.97 E-value=83 Score=33.66 Aligned_cols=104 Identities=18% Similarity=0.309 Sum_probs=58.5
Q ss_pred EeCCHHHHHHHHHHHHhCCC--E--EE-EE-------------C----CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHH
Q 006057 20 VDDDPTCLLLLETLLRRCQY--H--VT-TT-------------S----QAITALKLLRENKNKFDLVISDVHMPDMDGFK 77 (663)
Q Consensus 20 VDDD~~~r~iL~~lL~~~gy--~--V~-ta-------------s----dg~EALelLre~k~~pDLVIlDv~MPdmDG~e 77 (663)
++++....+.+++.++..|+ . +. -+ . +..+|++++...-.++++..++==++..| ++
T Consensus 220 ~~~d~~~v~~vreav~~~G~~~~~~L~vDa~as~~~~n~~~~~~n~~~~~~~ai~~~~~~l~~~~i~~iEeP~~~~d-~~ 298 (427)
T 2pa6_A 220 LKTSREALDLLTESVKKAGYEDEVVFALDAAASEFYKDGYYYVEGKKLTREELLDYYKALVDEYPIVSIEDPFHEED-FE 298 (427)
T ss_dssp CCSHHHHHHHHHHHHHHHTCTTTCEEEEECCGGGGEETTEEEETTEEECHHHHHHHHHHHHHHSCEEEEECCSCTTC-HH
T ss_pred ccchHHHHHHHHHHHHHhCCCCCcEEEEEcchhccccCCceeecCCCCCHHHHHHHHHHHHhhCCCcEEEcCCChhh-HH
Confidence 34555666667777754454 2 21 12 1 56788877542112478888866555433 44
Q ss_pred HHHHHhccCCCcEEEEecCC---ChHHHHHHHhcCCce-EEeCCCCHHHHHHH
Q 006057 78 LLELVGLEMDLPVIMLSGNG---DPKLVMKGITHGACD-YLLKPVRIEELKNI 126 (663)
Q Consensus 78 LLe~Ir~~~dIPVIILSA~~---d~e~v~kAl~aGA~D-YLlKPvs~eeL~~~ 126 (663)
-++.++....+||+ +... ....+.++++.|+++ +.+|+...--|...
T Consensus 299 ~~~~l~~~~~ipIa--~dE~~~~~~~~~~~~i~~~a~d~i~ik~~~~GGitea 349 (427)
T 2pa6_A 299 GFAMITKELDIQIV--GDDLFVTNVERLRKGIEMKAANALLLKVNQIGTLSEA 349 (427)
T ss_dssp HHHHHHHHSSSEEE--ESTTTTTCHHHHHHHHHHTCCSEEEECHHHHCSHHHH
T ss_pred HHHHHHhhCCCeEE--eCccccCCHHHHHHHHHhCCCCEEEEcccccCCHHHH
Confidence 45555544556653 4432 367788889888766 45677543333333
No 403
>2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A*
Probab=21.94 E-value=1.7e+02 Score=30.83 Aligned_cols=81 Identities=5% Similarity=-0.038 Sum_probs=52.1
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceE-EeCCCCHHHHH
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDY-LLKPVRIEELK 124 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DY-LlKPvs~eeL~ 124 (663)
+.++|+++++.- .++++..++--+|. +-++.++.++....+||+.--.......+.++++.|++|+ .+|+...-=|.
T Consensus 230 ~~~~ai~~~~~l-~~~~i~~iE~P~~~-~~~~~~~~l~~~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~GGit 307 (410)
T 2gl5_A 230 GTNSAIQFAKAI-EKYRIFLYEEPIHP-LNSDNMQKVSRSTTIPIATGERSYTRWGYRELLEKQSIAVAQPDLCLCGGIT 307 (410)
T ss_dssp CHHHHHHHHHHH-GGGCEEEEECSSCS-SCHHHHHHHHHHCSSCEEECTTCCTTHHHHHHHHTTCCSEECCCTTTTTHHH
T ss_pred CHHHHHHHHHHH-HhcCCCeEECCCCh-hhHHHHHHHHhhCCCCEEecCCcCCHHHHHHHHHcCCCCEEecCccccCCHH
Confidence 567787777653 25677777655553 3356666666656788876544456778889999887665 56776644444
Q ss_pred HHHH
Q 006057 125 NIWQ 128 (663)
Q Consensus 125 ~~~q 128 (663)
..++
T Consensus 308 ~~~~ 311 (410)
T 2gl5_A 308 EGKK 311 (410)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 404
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=21.87 E-value=3.4e+02 Score=25.16 Aligned_cols=84 Identities=12% Similarity=-0.056 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCEEEE-EC---CHHHHHHHHHhcCCCceEE-EEeCCC---CCCCHH-HHHHHHhccCCCcEEEEecCC
Q 006057 27 LLLLETLLRRCQYHVTT-TS---QAITALKLLRENKNKFDLV-ISDVHM---PDMDGF-KLLELVGLEMDLPVIMLSGNG 97 (663)
Q Consensus 27 r~iL~~lL~~~gy~V~t-as---dg~EALelLre~k~~pDLV-IlDv~M---PdmDG~-eLLe~Ir~~~dIPVIILSA~~ 97 (663)
...+.+.+++.|..+.. +. +..+.++.+.+. ..|+| +.=... ++.+.. +.++.+... ++||++.-+-.
T Consensus 92 ~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~--g~d~v~~~~~~~~~~~g~~~~~~~i~~~~~~-~~pi~v~GGI~ 168 (207)
T 3ajx_A 92 IAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRAL--GAKFVEMHAGLDEQAKPGFDLNGLLAAGEKA-RVPFSVAGGVK 168 (207)
T ss_dssp HHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHT--TCSEEEEECCHHHHTSTTCCTHHHHHHHHHH-TSCEEEESSCC
T ss_pred HHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHh--CCCEEEEEecccccccCCCchHHHHHHhhCC-CCCEEEECCcC
Confidence 33444555555666533 32 555544444432 47887 531211 222212 444444322 67887665544
Q ss_pred ChHHHHHHHhcCCceEE
Q 006057 98 DPKLVMKGITHGACDYL 114 (663)
Q Consensus 98 d~e~v~kAl~aGA~DYL 114 (663)
.+.+.+++++||+.++
T Consensus 169 -~~~~~~~~~aGad~vv 184 (207)
T 3ajx_A 169 -VATIPAVQKAGAEVAV 184 (207)
T ss_dssp -GGGHHHHHHTTCSEEE
T ss_pred -HHHHHHHHHcCCCEEE
Confidence 6788889999999875
No 405
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=21.70 E-value=1.4e+02 Score=29.91 Aligned_cols=83 Identities=18% Similarity=0.120 Sum_probs=52.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC---CC-CCC-CHHHHHHHHhccC-CCcEEE-EecCCChHHHHHHHhcCCceEEeCCC
Q 006057 46 QAITALKLLRENKNKFDLVISDV---HM-PDM-DGFKLLELVGLEM-DLPVIM-LSGNGDPKLVMKGITHGACDYLLKPV 118 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv---~M-Pdm-DG~eLLe~Ir~~~-dIPVII-LSA~~d~e~v~kAl~aGA~DYLlKPv 118 (663)
+..++++.+.+. ..|.+=+|+ +. |.. -|.++++.+|... ++|+.+ +--..-..++..+.++||+.+..-..
T Consensus 41 ~L~~~i~~l~~~--G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~E 118 (246)
T 3inp_A 41 RLGDDVKAVLAA--GADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE 118 (246)
T ss_dssp GHHHHHHHHHHT--TCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEEECGG
T ss_pred hHHHHHHHHHHc--CCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccc
Confidence 456777777653 345555554 32 333 3788999887654 778654 33333455788899999988877765
Q ss_pred CHHHHHHHHHHH
Q 006057 119 RIEELKNIWQHV 130 (663)
Q Consensus 119 s~eeL~~~~q~V 130 (663)
..+++...++.+
T Consensus 119 a~~~~~~~i~~i 130 (246)
T 3inp_A 119 ASEHIDRSLQLI 130 (246)
T ss_dssp GCSCHHHHHHHH
T ss_pred cchhHHHHHHHH
Confidence 445565555554
No 406
>2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens}
Probab=21.67 E-value=1.5e+02 Score=30.90 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCce-EEeCCCCH
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACD-YLLKPVRI 120 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~D-YLlKPvs~ 120 (663)
+.++|+++++.- .++++ .++--++ -++.++.++....+||+.--...+...+.++++.|++| +.+||...
T Consensus 201 ~~~~a~~~~~~l-~~~~i-~iE~P~~---~~~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (379)
T 2rdx_A 201 RVDNAIRLARAT-RDLDY-ILEQPCR---SYEECQQVRRVADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNL 271 (379)
T ss_dssp CHHHHHHHHHHT-TTSCC-EEECCSS---SHHHHHHHHTTCCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTT
T ss_pred CHHHHHHHHHHH-HhCCe-EEeCCcC---CHHHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence 455666665543 23455 5543333 35555666666678887654455677888888888655 56788764
No 407
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=21.54 E-value=3.3e+02 Score=27.58 Aligned_cols=105 Identities=11% Similarity=0.136 Sum_probs=60.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhC-CCEEEE-ECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRC-QYHVTT-TSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~-gy~V~t-asdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.+||.||.--..-+......|... +++++. +....+..+ .. .+.+-+. .|--++ +. .+++-+|
T Consensus 7 ~~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~---~~--~~~~~~~------~~~~~l---l~-~~~vD~V 71 (352)
T 3kux_A 7 KIKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVH---AD--WPAIPVV------SDPQML---FN-DPSIDLI 71 (352)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHH---TT--CSSCCEE------SCHHHH---HH-CSSCCEE
T ss_pred CceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHH---hh--CCCCceE------CCHHHH---hc-CCCCCEE
Confidence 479999998776655344445444 677663 433222222 11 1111111 122222 22 3445555
Q ss_pred EEec--CCChHHHHHHHhcCCceEEeCC--CCHHHHHHHHHHHHHh
Q 006057 92 MLSG--NGDPKLVMKGITHGACDYLLKP--VRIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILSA--~~d~e~v~kAl~aGA~DYLlKP--vs~eeL~~~~q~Vlrr 133 (663)
+++. ....+.+.+|+++|..=|+-|| .+.++...+++.+-+.
T Consensus 72 ~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~~ 117 (352)
T 3kux_A 72 VIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADDA 117 (352)
T ss_dssp EECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHT
T ss_pred EEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHHc
Confidence 5543 3346788999999999999999 6678888877665543
No 408
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=21.50 E-value=2.4e+02 Score=28.31 Aligned_cols=68 Identities=21% Similarity=0.108 Sum_probs=0.0
Q ss_pred CHHHHHHHHHhcCCCce-EEEEeCCCCCCCH-----------HHHHHHHhccCCCcEEE-EecCCChHH----HHHHHhc
Q 006057 46 QAITALKLLRENKNKFD-LVISDVHMPDMDG-----------FKLLELVGLEMDLPVIM-LSGNGDPKL----VMKGITH 108 (663)
Q Consensus 46 dg~EALelLre~k~~pD-LVIlDv~MPdmDG-----------~eLLe~Ir~~~dIPVII-LSA~~d~e~----v~kAl~a 108 (663)
+..++.+.+.+. .+| .|-+.+.-|...| .++++.++...++||++ ++...+.+. +..+.++
T Consensus 107 ~~~~~a~~~~~~--g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~~~~~~a~~~~~~ 184 (311)
T 1jub_A 107 ENIAMLKKIQES--DFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEILNQF 184 (311)
T ss_dssp HHHHHHHHHHHS--CCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhc--CCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHc
Q ss_pred CCceEEe
Q 006057 109 GACDYLL 115 (663)
Q Consensus 109 GA~DYLl 115 (663)
|++.+.+
T Consensus 185 G~d~i~v 191 (311)
T 1jub_A 185 PLTYVNS 191 (311)
T ss_dssp CCCEEEE
T ss_pred CCcEEEe
No 409
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=21.46 E-value=2.9e+02 Score=27.80 Aligned_cols=107 Identities=15% Similarity=0.154 Sum_probs=60.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEEEE-CC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVTTT-SQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~ta-sd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.+||.||.--..-...+..+.+..+++++.+ .. .+.+.+..... ...-+. .|--++++ ..++-+|
T Consensus 5 ~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~--~~~~~~-------~~~~~ll~----~~~~D~V 71 (330)
T 3e9m_A 5 KIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKEL--AIPVAY-------GSYEELCK----DETIDII 71 (330)
T ss_dssp CEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHT--TCCCCB-------SSHHHHHH----CTTCSEE
T ss_pred eEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHc--CCCcee-------CCHHHHhc----CCCCCEE
Confidence 4789999876655555555544456777643 33 33333333322 111011 12222222 2344444
Q ss_pred EEe--cCCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHHh
Q 006057 92 MLS--GNGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVRR 133 (663)
Q Consensus 92 ILS--A~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlrr 133 (663)
+++ .....+.+.+|+++|..-|+-||+ +.++...+++.+-+.
T Consensus 72 ~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~ 117 (330)
T 3e9m_A 72 YIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQ 117 (330)
T ss_dssp EECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHT
T ss_pred EEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 443 334466788999999999999994 578887777665443
No 410
>2fym_A Enolase; RNA degradosome, enolase, lyase; 1.60A {Escherichia coli} SCOP: c.1.11.1 d.54.1.1 PDB: 1e9i_A 3h8a_A
Probab=21.39 E-value=1.6e+02 Score=31.65 Aligned_cols=79 Identities=15% Similarity=0.285 Sum_probs=46.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccC--CCcEEEEecC---CChHHHHHHHhcCCce-EEeCCCC
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEM--DLPVIMLSGN---GDPKLVMKGITHGACD-YLLKPVR 119 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~--dIPVIILSA~---~d~e~v~kAl~aGA~D-YLlKPvs 119 (663)
+..+|++++++-..+++++.++==++..| ++-++.++... .+||+ ... .....+.++++.|+++ +.+|+..
T Consensus 268 t~~~ai~~~~~L~~~~~i~~iEePl~~~d-~~~~~~l~~~~~~~ipIa--~dEl~~~~~~~~~~~i~~~a~d~i~ik~~~ 344 (431)
T 2fym_A 268 TSEEFTHFLEELTKQYPIVSIEDGLDESD-WDGFAYQTKVLGDKIQLV--GDDLFVTNTKILKEGIEKGIANSILIKFNQ 344 (431)
T ss_dssp CHHHHHHHHHHHHHHSCEEEEESCSCTTC-HHHHHHHHHHHTTTSEEE--ESTTTTTCHHHHHHHHHTTCCSEEEECGGG
T ss_pred CHHHHHHHHHHHHHhCCceEEECCCCccc-HHHHHHHHHHhCCCCeEE--eCCcccCCHHHHHHHHHhCCCCEEEECccc
Confidence 57888887765322378888866665544 33334443322 56654 333 3567788889888766 5678865
Q ss_pred HHHHHHHH
Q 006057 120 IEELKNIW 127 (663)
Q Consensus 120 ~eeL~~~~ 127 (663)
.--|...+
T Consensus 345 ~GGite~~ 352 (431)
T 2fym_A 345 IGSLTETL 352 (431)
T ss_dssp TCSHHHHH
T ss_pred cCCHHHHH
Confidence 44444433
No 411
>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}
Probab=21.39 E-value=4e+02 Score=25.68 Aligned_cols=107 Identities=16% Similarity=0.081 Sum_probs=57.3
Q ss_pred CcEEEEEeCC------HHHHHHHHHHHHhCCCEEE-EECCHHHHHHHHHhcCCCceEEEEeCCCCCCCH-----------
Q 006057 14 GLRVLAVDDD------PTCLLLLETLLRRCQYHVT-TTSQAITALKLLRENKNKFDLVISDVHMPDMDG----------- 75 (663)
Q Consensus 14 glRVLIVDDD------~~~r~iL~~lL~~~gy~V~-tasdg~EALelLre~k~~pDLVIlDv~MPdmDG----------- 75 (663)
|...++|.+. ...++.++. ....|..+. .+.+..++.++ .. -..++|-+.-...-..|
T Consensus 82 Gad~Vll~~ser~l~~~e~~~~~~~-a~~~Gl~~iv~v~~~~e~~~~-~~--~~~~~i~~~~~~~iGtG~~~~t~~~~~~ 157 (219)
T 2h6r_A 82 GCKGTLINHSEKRMLLADIEAVINK-CKNLGLETIVCTNNINTSKAV-AA--LSPDCIAVEPPELIGTGIPVSKANPEVV 157 (219)
T ss_dssp TCCEEEESBTTBCCBHHHHHHHHHH-HHHHTCEEEEEESSSHHHHHH-TT--TCCSEEEECCCC--------------CS
T ss_pred CCCEEEECCccccCCHHHHHHHHHH-HHHCCCeEEEEeCCchHHHHH-Hh--CCCCEEEEEeccccccCCCCccCCHHHH
Confidence 4555666442 133333333 344587655 44554554333 22 13566655433321122
Q ss_pred HHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEe-----CCCCHHHHH
Q 006057 76 FKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLL-----KPVRIEELK 124 (663)
Q Consensus 76 ~eLLe~Ir~~~-dIPVIILSA~~d~e~v~kAl~aGA~DYLl-----KPvs~eeL~ 124 (663)
-+.++.++... ++||++-.+-...+.+..+...|++++|+ |+-++.+..
T Consensus 158 ~~~~~~ir~~~~~~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~~d~~~~~ 212 (219)
T 2h6r_A 158 EGTVRAVKEINKDVKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKAKNVEEAI 212 (219)
T ss_dssp HHHHHHHHHHCTTCEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTCSSHHHHH
T ss_pred HHHHHHHHhccCCCeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCcccHHHHH
Confidence 12334455433 68888877777788888899999999876 454554443
No 412
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=21.39 E-value=3e+02 Score=26.34 Aligned_cols=66 Identities=12% Similarity=0.085 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhCCCEEEEECC------HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 25 TCLLLLETLLRRCQYHVTTTSQ------AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 25 ~~r~iL~~lL~~~gy~V~tasd------g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
.+...+++.+++.||.+..+.. ..+.++.+... .+|-||+--..+. + +.++.+.. ..+|||++...
T Consensus 25 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~~~~-~--~~~~~l~~-~~iPvV~~~~~ 96 (287)
T 3bbl_A 25 QFLSSMVREAGAVNYFVLPFPFSEDRSQIDIYRDLIRSG--NVDGFVLSSINYN-D--PRVQFLLK-QKFPFVAFGRS 96 (287)
T ss_dssp HHHHHHHHHHHHTTCEEEECCCCSSTTCCHHHHHHHHTT--CCSEEEECSCCTT-C--HHHHHHHH-TTCCEEEESCC
T ss_pred HHHHHHHHHHHHcCCEEEEEeCCCchHHHHHHHHHHHcC--CCCEEEEeecCCC-c--HHHHHHHh-cCCCEEEECCc
Confidence 4556777788888999876532 13456666543 6898877432222 2 44554532 57899988543
No 413
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=21.37 E-value=1.5e+02 Score=30.58 Aligned_cols=92 Identities=17% Similarity=0.106 Sum_probs=50.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEE
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIM 92 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVII 92 (663)
..|||||+..=. +-..+...|.+ .++|+.+....+.++.+.+ ....+-+|+. |--++.+.++ ..++-|.+
T Consensus 15 ~~mkilvlGaG~-vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~---~~~~~~~d~~----d~~~l~~~~~-~~DvVi~~ 84 (365)
T 3abi_A 15 RHMKVLILGAGN-IGRAIAWDLKD-EFDVYIGDVNNENLEKVKE---FATPLKVDAS----NFDKLVEVMK-EFELVIGA 84 (365)
T ss_dssp -CCEEEEECCSH-HHHHHHHHHTT-TSEEEEEESCHHHHHHHTT---TSEEEECCTT----CHHHHHHHHT-TCSEEEEC
T ss_pred CccEEEEECCCH-HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc---cCCcEEEecC----CHHHHHHHHh-CCCEEEEe
Confidence 458999998844 45556666755 5888877655555665543 3445555652 3333334443 23332222
Q ss_pred EecCCChHHHHHHHhcCCceEEe
Q 006057 93 LSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 93 LSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+-.......+..|+++|++ |+.
T Consensus 85 ~p~~~~~~v~~~~~~~g~~-yvD 106 (365)
T 3abi_A 85 LPGFLGFKSIKAAIKSKVD-MVD 106 (365)
T ss_dssp CCGGGHHHHHHHHHHHTCE-EEE
T ss_pred cCCcccchHHHHHHhcCcc-eEe
Confidence 2222334567778888864 544
No 414
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=21.33 E-value=2.9e+02 Score=27.87 Aligned_cols=56 Identities=18% Similarity=0.181 Sum_probs=38.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHh--CC----CEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRR--CQ----YHV-TTTSQAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~--~g----y~V-~tasdg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
..+|..||-++...+..++.+.. .+ -.| ....++.+.+.. ....+|+||+|...|.
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---~~~~fD~Ii~d~~~~~ 163 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLER---TEERYDVVIIDLTDPV 163 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHH---CCCCEEEEEEECCCCB
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHh---cCCCccEEEECCCCcc
Confidence 56899999999988888887753 11 123 345677665432 2357999999987654
No 415
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=21.29 E-value=1.3e+02 Score=28.88 Aligned_cols=69 Identities=14% Similarity=0.114 Sum_probs=45.7
Q ss_pred CHHHHHHHHHhcCCCceEEEEeC---CC-CCCCHHHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 46 QAITALKLLRENKNKFDLVISDV---HM-PDMDGFKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv---~M-PdmDG~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
+..+..+.+.+. ..|.|-++. .. +...- ++++.+++...+|+++--.-.+.+.+..++++||+..++--
T Consensus 32 d~~~~a~~~~~~--Gad~i~v~~~d~~~~~~~~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~ 104 (244)
T 2y88_A 32 SAVDAALGWQRD--GAEWIHLVDLDAAFGRGSNH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGT 104 (244)
T ss_dssp EHHHHHHHHHHT--TCSEEEEEEHHHHTTSCCCH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred CHHHHHHHHHHc--CCCEEEEEcCcccccCCChH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECc
Confidence 555655555543 355444432 22 22333 78888877778999887666777889999999998876643
No 416
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=21.17 E-value=98 Score=32.68 Aligned_cols=35 Identities=9% Similarity=0.161 Sum_probs=29.9
Q ss_pred hHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHh
Q 006057 99 PKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRR 133 (663)
Q Consensus 99 ~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr 133 (663)
.+.+.+|+++|..=++-||++.+|...+++.+-++
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~~ 118 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQEQ 118 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHHc
Confidence 57789999999999999999999988877765544
No 417
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=21.14 E-value=1.6e+02 Score=30.44 Aligned_cols=68 Identities=15% Similarity=0.105 Sum_probs=45.3
Q ss_pred ceEEEE-eCCCCCCCHH-HHHHHHhc-cCCCcEEEEecCCChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHH
Q 006057 61 FDLVIS-DVHMPDMDGF-KLLELVGL-EMDLPVIMLSGNGDPKLVMKGITHGACDYLLKPVRIEELKNIWQHV 130 (663)
Q Consensus 61 pDLVIl-Dv~MPdmDG~-eLLe~Ir~-~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~V 130 (663)
.|.|++ |-|+--..|+ +.++..+. .+..||.+-. ...+.+.+|+++||+..++.-+++++++.+++.+
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~~~~~IeVEv--~tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~ 239 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLDSNKVVEVEV--TNLDELNQAIAAKADIVMLDNFSGEDIDIAVSIA 239 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHCTTSCEEEEE--SSHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHH
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhCCCCcEEEEe--CCHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhh
Confidence 355555 6555433333 34444443 3567877633 3457889999999999999999999999988765
No 418
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=21.10 E-value=2.8e+02 Score=27.82 Aligned_cols=32 Identities=19% Similarity=0.230 Sum_probs=22.8
Q ss_pred CcEEEEEeCC--H-------HHHHHHHHHHHhCCCEEEEEC
Q 006057 14 GLRVLAVDDD--P-------TCLLLLETLLRRCQYHVTTTS 45 (663)
Q Consensus 14 glRVLIVDDD--~-------~~r~iL~~lL~~~gy~V~tas 45 (663)
.||||+|-.. + .....|.+.|.+.||+|+.+.
T Consensus 2 ~MkIl~v~~~~~p~~~gG~~~~~~~la~~L~~~G~~V~v~~ 42 (439)
T 3fro_A 2 HMKVLLLGFEFLPVKVGGLAEALTAISEALASLGHEVLVFT 42 (439)
T ss_dssp CCEEEEECSCCTTSCSSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEEecccCCcccCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4899998755 1 245567788888899987554
No 419
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=21.08 E-value=2e+02 Score=31.48 Aligned_cols=67 Identities=15% Similarity=0.038 Sum_probs=45.9
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCC-HHHHHHHHhcc-CCCcEEEEecCCChHHHHHHHhcCCceEEe
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPDMD-GFKLLELVGLE-MDLPVIMLSGNGDPKLVMKGITHGACDYLL 115 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPdmD-G~eLLe~Ir~~-~dIPVIILSA~~d~e~v~kAl~aGA~DYLl 115 (663)
+..+.++.+.+. .+|+|.+|...+... -+++++.++.. +++|||+-. -...+.+..+.++||+...+
T Consensus 229 ~~~~~a~~l~~a--G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g~-v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAA--GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGGN-IATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHT--TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhhc--ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEee-eCcHHHHHHHHHcCCCEEEE
Confidence 344444444443 599999998776543 34677777655 478887732 34567889999999998876
No 420
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*
Probab=21.05 E-value=2.2e+02 Score=29.77 Aligned_cols=53 Identities=15% Similarity=0.147 Sum_probs=39.8
Q ss_pred EEEEEeCCHHHHHHHHHHHHhCCC---EE-EEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 16 RVLAVDDDPTCLLLLETLLRRCQY---HV-TTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 16 RVLIVDDD~~~r~iL~~lL~~~gy---~V-~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
+|..||-++...+..++-++..+. .+ ..+.++.+.+..+......||+||+|-
T Consensus 237 ~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DP 293 (385)
T 2b78_A 237 ATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDP 293 (385)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEEECC
Confidence 799999999888888888877664 23 467788887765543334799999984
No 421
>2yrx_A Phosphoribosylglycinamide synthetase; glycinamide ribonucleotide synthetase, GAR synthetase; HET: AMP; 1.90A {Geobacillus kaustophilus} PDB: 2yrw_A* 2ys6_A* 2ys7_A
Probab=20.99 E-value=3.5e+02 Score=28.49 Aligned_cols=55 Identities=13% Similarity=0.105 Sum_probs=31.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCCEEEEEC------------------CHHHHHHHHHhcCCCceEEEEe
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQYHVTTTS------------------QAITALKLLRENKNKFDLVISD 67 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy~V~tas------------------dg~EALelLre~k~~pDLVIlD 67 (663)
+..+++|||+............+.++.|+.++.+. +.+..++++++. .+|+|+..
T Consensus 18 ~~~~~~iliiG~g~r~~a~a~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~d~vi~~ 90 (451)
T 2yrx_A 18 FQSHMNVLVIGRGGREHAIAWKAAQSPLVGKLYVAPGNPGIADVAELVHIDELDIEALVQFAKQQ--AIDLTIVG 90 (451)
T ss_dssp CCSSEEEEEEECSHHHHHHHHHHHTCTTEEEEEEEECCTTGGGTSEECCCCTTCHHHHHHHHHHT--TCSEEEEC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCChhhhhhCceeccCCCCHHHHHHHHHHc--CCCEEEEC
Confidence 34568999999885332222333355677643221 334445556543 68999864
No 422
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=20.96 E-value=1.9e+02 Score=29.33 Aligned_cols=97 Identities=13% Similarity=0.086 Sum_probs=57.4
Q ss_pred EEEeCCHHHHHHHHHHHHhCCCEEE-EEC--CHHHHHHHHHhcCCCceEEEEeCCCCCCC---------HHHHHHHHhcc
Q 006057 18 LAVDDDPTCLLLLETLLRRCQYHVT-TTS--QAITALKLLRENKNKFDLVISDVHMPDMD---------GFKLLELVGLE 85 (663)
Q Consensus 18 LIVDDD~~~r~iL~~lL~~~gy~V~-tas--dg~EALelLre~k~~pDLVIlDv~MPdmD---------G~eLLe~Ir~~ 85 (663)
+|.|=.......+...+++.|..++ .+. +..+-++.+.+... +.|-+ +-..+.. -.+++++++..
T Consensus 130 IipDlp~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~~--gfiY~-vs~~GvTG~~~~~~~~~~~~v~~vr~~ 206 (271)
T 3nav_A 130 LIADVPTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLGK--GYTYL-LSRAGVTGAETKANMPVHALLERLQQF 206 (271)
T ss_dssp EETTSCGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHCC--SCEEE-CCCC--------CCHHHHHHHHHHHHT
T ss_pred EECCCCHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHCC--CeEEE-EeccCCCCcccCCchhHHHHHHHHHHh
Confidence 3334334445567777777776533 332 23344444444332 33333 1122212 24567777776
Q ss_pred CCCcEEEEecCCChHHHHHHHhcCCceEEeCC
Q 006057 86 MDLPVIMLSGNGDPKLVMKGITHGACDYLLKP 117 (663)
Q Consensus 86 ~dIPVIILSA~~d~e~v~kAl~aGA~DYLlKP 117 (663)
.++||++=.+-...+.+.+++..||++.++--
T Consensus 207 ~~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 207 DAPPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp TCCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred cCCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 78999876666778888889999999998764
No 423
>3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A*
Probab=20.96 E-value=1.3e+02 Score=31.68 Aligned_cols=71 Identities=10% Similarity=-0.025 Sum_probs=48.5
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhcc-----CCCcEEEEecCCChHHHHHHHhcCCceE-EeCCCC
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLE-----MDLPVIMLSGNGDPKLVMKGITHGACDY-LLKPVR 119 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~-----~dIPVIILSA~~d~e~v~kAl~aGA~DY-LlKPvs 119 (663)
+.++|+++++.- .++++..++--+| +-++.++.++.. ..+||+.-- ......+.++++.|++|+ .+||..
T Consensus 213 ~~~~ai~~~~~l-~~~~i~~iE~P~~--~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik~~~ 288 (392)
T 3p3b_A 213 NLNLTKEVLAAL-SDVNLYWLEEAFH--EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYDIIW 288 (392)
T ss_dssp CHHHHHHHHHHT-TTSCEEEEECSSS--CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCBTTT
T ss_pred CHHHHHHHHHHH-HhcCCCEEecCCc--ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeCccc
Confidence 567888887764 3577877776566 445666666655 568877654 555667888999997665 567876
Q ss_pred H
Q 006057 120 I 120 (663)
Q Consensus 120 ~ 120 (663)
.
T Consensus 289 ~ 289 (392)
T 3p3b_A 289 P 289 (392)
T ss_dssp B
T ss_pred c
Confidence 4
No 424
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=20.94 E-value=3.6e+02 Score=27.37 Aligned_cols=109 Identities=13% Similarity=0.090 Sum_probs=59.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCEEE-EECC-HHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEE
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYHVT-TTSQ-AITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVI 91 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~V~-tasd-g~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVI 91 (663)
.+||.||---..-+..+..+....+++++ .+.. .+.+.+........+.....+ +--+ .+. .+++-+|
T Consensus 6 ~~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~------~~~~---ll~-~~~~D~V 75 (362)
T 1ydw_A 6 QIRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHG------SYES---LLE-DPEIDAL 75 (362)
T ss_dssp CEEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEES------SHHH---HHH-CTTCCEE
T ss_pred ceEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeC------CHHH---Hhc-CCCCCEE
Confidence 47899998766555555554443466665 4443 333433333321000111111 1112 232 2344455
Q ss_pred EEec--CCChHHHHHHHhcCCceEEeCCC--CHHHHHHHHHHHHH
Q 006057 92 MLSG--NGDPKLVMKGITHGACDYLLKPV--RIEELKNIWQHVVR 132 (663)
Q Consensus 92 ILSA--~~d~e~v~kAl~aGA~DYLlKPv--s~eeL~~~~q~Vlr 132 (663)
+++. ....+.+.+|+++|..-|+-||+ +.++...+++.+-+
T Consensus 76 ~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~ 120 (362)
T 1ydw_A 76 YVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEA 120 (362)
T ss_dssp EECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred EEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHH
Confidence 5543 33457788999999999999994 56777776665443
No 425
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}
Probab=20.93 E-value=80 Score=30.69 Aligned_cols=59 Identities=17% Similarity=0.292 Sum_probs=42.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHHHHHhc--CCCceEEEEeCC
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALKLLREN--KNKFDLVISDVH 69 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~gy--~V-~tasdg~EALelLre~--k~~pDLVIlDv~ 69 (663)
+|.+.+|..||-++...+..++.++..+. .| ....++.+.+..+... ...||+|++|..
T Consensus 82 ~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~~ 145 (242)
T 3r3h_A 82 LPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDAD 145 (242)
T ss_dssp SCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEESC
T ss_pred CCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcCC
Confidence 45567999999988877777888877664 24 3567887776655321 247999999975
No 426
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=20.84 E-value=1.8e+02 Score=30.40 Aligned_cols=63 Identities=14% Similarity=0.156 Sum_probs=39.7
Q ss_pred cEEEEEeCCHH------HHHHHHHHHHhCCCEEEEEC---------CHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHH
Q 006057 15 LRVLAVDDDPT------CLLLLETLLRRCQYHVTTTS---------QAITALKLLRENKNKFDLVISDVHMPDMDGFKLL 79 (663)
Q Consensus 15 lRVLIVDDD~~------~r~iL~~lL~~~gy~V~tas---------dg~EALelLre~k~~pDLVIlDv~MPdmDG~eLL 79 (663)
-|||||-|... ..+.+...|+..|+.+..+. ...++++.+++. .+|+||- +.+..-+++.
T Consensus 34 ~~~livtd~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~--~~d~IIa---vGGGsv~D~a 108 (387)
T 3bfj_A 34 KKALLVTDKGLRAIKDGAVDKTLHYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRRE--QCDIIVT---VGGGSPHDCG 108 (387)
T ss_dssp SEEEEECCTTTC--CCSSHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHT--TCCEEEE---EESHHHHHHH
T ss_pred CEEEEEECcchhhccchHHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhc--CCCEEEE---eCCcchhhHH
Confidence 58999987642 45667777877787765443 234566666654 6788874 3455555666
Q ss_pred HHH
Q 006057 80 ELV 82 (663)
Q Consensus 80 e~I 82 (663)
+.+
T Consensus 109 K~i 111 (387)
T 3bfj_A 109 KGI 111 (387)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 427
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=20.83 E-value=1.7e+02 Score=31.60 Aligned_cols=54 Identities=22% Similarity=0.166 Sum_probs=32.4
Q ss_pred CCcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEECC---HH----HHHHHHHhcCCCceEEEEeC
Q 006057 13 SGLRVLAVDDDP---TCLLLLETLLRRCQYHVTTTSQ---AI----TALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 13 ~glRVLIVDDD~---~~r~iL~~lL~~~gy~V~tasd---g~----EALelLre~k~~pDLVIlDv 68 (663)
.+.+|+++|.|. ...+.|...-+..+..+..... +. ++++.++. ..+|+||+|.
T Consensus 125 ~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~~~--~~~DvVIIDT 188 (425)
T 2ffh_A 125 KGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL--EARDLILVDT 188 (425)
T ss_dssp TTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH--TTCSEEEEEC
T ss_pred cCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHHHH--CCCCEEEEcC
Confidence 467999999884 3333344444455666665532 22 23444432 3689999997
No 428
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=20.75 E-value=2.8e+02 Score=25.88 Aligned_cols=104 Identities=19% Similarity=0.284 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhCCCEEEE--EC-------------CHH----HHHHHHHhcCCCceEEEEeCCCCC-CCHHHHHHHH
Q 006057 23 DPTCLLLLETLLRRCQYHVTT--TS-------------QAI----TALKLLRENKNKFDLVISDVHMPD-MDGFKLLELV 82 (663)
Q Consensus 23 D~~~r~iL~~lL~~~gy~V~t--as-------------dg~----EALelLre~k~~pDLVIlDv~MPd-mDG~eLLe~I 82 (663)
+....+.+...|++.| .|.. +. +.. ..++.++ .-|+||..+.-|+ ..++|+--..
T Consensus 17 ~~~~~~~i~~~L~~~G-~Vl~~hv~~~~l~~~g~~~~~~~~~i~~~d~~~i~----~aD~vvA~l~~~d~Gt~~EiG~A~ 91 (152)
T 4fyk_A 17 DQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQNLNWLQ----QADVVVAEVTQPSLGVGYELGRAV 91 (152)
T ss_dssp THHHHHHHHHHHTTTS-EECCCC-------------CCCHHHHHHHHHHHHH----HCSEEEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcC-cccccccCchhhhhccccccCCHHHHHHHHHHHHH----HCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4355677888888888 5531 11 111 1233444 3599999887554 3455554433
Q ss_pred hccCCCcEEEEecCC---ChHHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHhh
Q 006057 83 GLEMDLPVIMLSGNG---DPKLVMKGITHGACDYLLKPVRIEELKNIWQHVVRRK 134 (663)
Q Consensus 83 r~~~dIPVIILSA~~---d~e~v~kAl~aGA~DYLlKPvs~eeL~~~~q~Vlrr~ 134 (663)
...+||+++.... ....+.++...| ..|..+++...+|..++...+...
T Consensus 92 --algkPV~~l~~~~~~~~ls~mi~G~~~~-~~~~~~~Y~~~el~~il~~f~~~~ 143 (152)
T 4fyk_A 92 --ALGKPILCLFRPQSGRVLSAMIRGAADG-SRFQVWDYAEGEVETMLDRYFEAY 143 (152)
T ss_dssp --HTTCCEEEEECGGGSCCCCHHHHHHCCS-SSEEEEECCTTCHHHHHHHHHC--
T ss_pred --HcCCeEEEEEeCCccchhHHHHcCCCCC-CeEEEEEecHHHHHHHHHHHHHhh
Confidence 3467999987633 333444444433 458888888899999888876543
No 429
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=20.69 E-value=2.4e+02 Score=25.84 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=39.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCCC--EEEEECCHHHHHHHHHhcCCCceEEEEeC
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQY--HVTTTSQAITALKLLRENKNKFDLVISDV 68 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~gy--~V~tasdg~EALelLre~k~~pDLVIlDv 68 (663)
.+.+|.+... ......+..++...|. .+..+.+..+++.++..+ ++|+++.|.
T Consensus 147 ~g~~i~~~~g-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~ 201 (259)
T 2v25_A 147 KGANIGVAQA-ATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAK--RVDAFSVDK 201 (259)
T ss_dssp TTCEEEEETT-CSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTT--SSSEEEEEH
T ss_pred CCCEEEEecC-CchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcC--CCcEEEecH
Confidence 3678777644 3455677777777664 677888999999999865 799999874
No 430
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=20.62 E-value=90 Score=30.41 Aligned_cols=113 Identities=12% Similarity=0.071 Sum_probs=62.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC----EEE-EECCHHHH--------------HH-HHH---h--cCCCceEEEEeC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY----HVT-TTSQAITA--------------LK-LLR---E--NKNKFDLVISDV 68 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy----~V~-tasdg~EA--------------Le-lLr---e--~k~~pDLVIlDv 68 (663)
+-+|.-||.|+...+..+..|++.|+ +|. ...++.++ +. +.. . ....||+|++|-
T Consensus 51 ~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg 130 (202)
T 3cvo_A 51 GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDG 130 (202)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeC
Confidence 46899999999999999999999886 443 33443322 22 111 1 124799999997
Q ss_pred CCCCCCHHHHHH-HHhccCCCcEEEEe---cCCChHHHHHHHhc----C-CceEEeCC--CCHHHHHHHHHHH
Q 006057 69 HMPDMDGFKLLE-LVGLEMDLPVIMLS---GNGDPKLVMKGITH----G-ACDYLLKP--VRIEELKNIWQHV 130 (663)
Q Consensus 69 ~MPdmDG~eLLe-~Ir~~~dIPVIILS---A~~d~e~v~kAl~a----G-A~DYLlKP--vs~eeL~~~~q~V 130 (663)
.-. ...+. .++.-..--+|++- .......+.+.+.. | ..-|-+|| ++.+.|..+++..
T Consensus 131 ~k~----~~~~~~~l~~l~~GG~Iv~DNv~~r~~y~~v~~~~~~~~~~~~~a~f~~~p~~~~~~~~~~~~~~~ 199 (202)
T 3cvo_A 131 RFR----VGCALATAFSITRPVTLLFDDYSQRRWQHQVEEFLGAPLMIGRLAAFQVEPQPIPPGSLMQLIRTM 199 (202)
T ss_dssp SSH----HHHHHHHHHHCSSCEEEEETTGGGCSSGGGGHHHHCCCEEETTEEEEEECCCCCCGGGHHHHHHHH
T ss_pred CCc----hhHHHHHHHhcCCCeEEEEeCCcCCcchHHHHHHHhHHhhcCceEEEEeCCCCCCHHHHHHHHHHh
Confidence 532 22222 22222222233332 22333344444441 2 23455555 6788888777664
No 431
>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}
Probab=20.51 E-value=4.3e+02 Score=25.96 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhCCCEEEEEC---CHHH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 25 TCLLLLETLLRRCQYHVTTTS---QAIT---ALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 25 ~~r~iL~~lL~~~gy~V~tas---dg~E---ALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
.+...++..+++.||.+..+. +.+. .++.+... .+|-||+--. ..+.-.+.+.+ ....+|||++...
T Consensus 80 ~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgiIi~~~--~~~~~~~~~~~-~~~~iPvV~~~~~ 152 (338)
T 3dbi_A 80 ELLFHAARMAEEKGRQLLLADGKHSAEEERQAIQYLLDL--RCDAIMIYPR--FLSVDEIDDII-DAHSQPIMVLNRR 152 (338)
T ss_dssp HHHHHHHHHHHHTTCEEEEEECTTSHHHHHHHHHHHHHT--TCSEEEECCS--SSCHHHHHHHH-HHCSSCEEEESSC
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHHHhC--CCCEEEEeCC--CCChHHHHHHH-HcCCCCEEEEcCC
Confidence 455667777888899987654 2222 44555543 6898887332 22333344433 3356899988654
No 432
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=20.47 E-value=3.3e+02 Score=27.06 Aligned_cols=108 Identities=20% Similarity=0.148 Sum_probs=58.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHHhCC---CEEEEE-------CCHHHHHHHHHhcCCCceEEEEeC--C--CCCC---CH
Q 006057 13 SGLRVLAVDDDPTCLLLLETLLRRCQ---YHVTTT-------SQAITALKLLRENKNKFDLVISDV--H--MPDM---DG 75 (663)
Q Consensus 13 ~glRVLIVDDD~~~r~iL~~lL~~~g---y~V~ta-------sdg~EALelLre~k~~pDLVIlDv--~--MPdm---DG 75 (663)
.|.+|+++|-|+.-+.....++.... ..+... .+...++. . .||+||+|- + .++. ..
T Consensus 33 ~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~---~---~pdlvIVDElG~~~~~~~r~~~~ 106 (228)
T 2r8r_A 33 QGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLK---A---APSLVLVDELAHTNAPGSRHTKR 106 (228)
T ss_dssp TTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHH---H---CCSEEEESCTTCBCCTTCSSSBH
T ss_pred CCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHh---c---CCCEEEEeCCCCCCcccchhHHH
Confidence 36789999887644433334443321 111111 23333332 2 599999993 2 2222 24
Q ss_pred HHHHHHHhccCCCcEEEEecCC---Ch-------------HHHHHHHhcCCceEEeCCCCHHHHHHHH
Q 006057 76 FKLLELVGLEMDLPVIMLSGNG---DP-------------KLVMKGITHGACDYLLKPVRIEELKNIW 127 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~---d~-------------e~v~kAl~aGA~DYLlKPvs~eeL~~~~ 127 (663)
++.+..+ ....+.||..+.-. +. +.+...+-..|+++.+=.+.+++|..++
T Consensus 107 ~qDV~~~-l~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a~~v~lvD~~p~~l~~rl 173 (228)
T 2r8r_A 107 WQDIQEL-LAAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEAFDLVLIDLPPRELLERL 173 (228)
T ss_dssp HHHHHHH-HHTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTCSEEEEBCCCHHHHHHHH
T ss_pred HHHHHHH-HcCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhCCeEEEecCCHHHHHHHH
Confidence 4544432 23456777655422 11 1222344567889999999999988874
No 433
>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}
Probab=20.47 E-value=2.5e+02 Score=26.90 Aligned_cols=64 Identities=16% Similarity=0.156 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHH---HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 26 CLLLLETLLRRCQYHVTTTS---QAI---TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~tas---dg~---EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
+...+++.+++.||.+..+. +.+ +.++.+.. ..+|.||+--.- .+ -+.++.+. ..+|||++...
T Consensus 26 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~--~~vdgiI~~~~~--~~-~~~~~~l~--~~iPvV~~~~~ 95 (285)
T 3c3k_A 26 VVKGIEKTAEKNGYRILLCNTESDLARSRSCLTLLSG--KMVDGVITMDAL--SE-LPELQNII--GAFPWVQCAEY 95 (285)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHTHHHHT--TCCSEEEECCCG--GG-HHHHHHHH--TTSSEEEESSC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCCCHHHHHHHHHHHHh--CCCCEEEEeCCC--CC-hHHHHHHh--cCCCEEEEccc
Confidence 44566777778899877553 222 23444543 368988873211 11 24555555 67999988543
No 434
>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}
Probab=20.44 E-value=3.6e+02 Score=24.80 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=18.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEE
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTT 44 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~ta 44 (663)
|+|||..-.-.+-..+.+.|.+.|++|+.+
T Consensus 1 M~ilItGatG~iG~~l~~~L~~~g~~V~~~ 30 (219)
T 3dqp_A 1 MKIFIVGSTGRVGKSLLKSLSTTDYQIYAG 30 (219)
T ss_dssp CEEEEESTTSHHHHHHHHHHTTSSCEEEEE
T ss_pred CeEEEECCCCHHHHHHHHHHHHCCCEEEEE
Confidence 467777766555555555555567776643
No 435
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=20.41 E-value=65 Score=30.98 Aligned_cols=82 Identities=11% Similarity=0.040 Sum_probs=41.8
Q ss_pred CHHHHHHHHHhcCCCceEEEEeCCCCC--CCHHHHHHHHhcc-CCCcEEEEe--cCCChHHHHHHHhcCCceEEeCCCCH
Q 006057 46 QAITALKLLRENKNKFDLVISDVHMPD--MDGFKLLELVGLE-MDLPVIMLS--GNGDPKLVMKGITHGACDYLLKPVRI 120 (663)
Q Consensus 46 dg~EALelLre~k~~pDLVIlDv~MPd--mDG~eLLe~Ir~~-~dIPVIILS--A~~d~e~v~kAl~aGA~DYLlKPvs~ 120 (663)
+.++++++++.-....| ++++.+|- ..|+++++.++.. ++.||++.. ......++..+.++||+....-....
T Consensus 17 ~~~~~~~~~~~~~~~vd--~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~~~~ 94 (218)
T 3jr2_A 17 NLTDAVAVASNVASYVD--VIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSAAAH 94 (218)
T ss_dssp SHHHHHHHHHHHGGGCS--EEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEETTSC
T ss_pred CHHHHHHHHHHhcCCce--EEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEecCCC
Confidence 44555555543211223 34444432 2456677777655 456665422 11122356777888887776665554
Q ss_pred HH-HHHHHHH
Q 006057 121 EE-LKNIWQH 129 (663)
Q Consensus 121 ee-L~~~~q~ 129 (663)
++ +...++.
T Consensus 95 ~~~~~~~~~~ 104 (218)
T 3jr2_A 95 IATIAACKKV 104 (218)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 33 4444443
No 436
>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A
Probab=20.40 E-value=3.5e+02 Score=25.61 Aligned_cols=66 Identities=11% Similarity=0.125 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhCCCEEEEEC---CHHH---HHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEecC
Q 006057 26 CLLLLETLLRRCQYHVTTTS---QAIT---ALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLSGN 96 (663)
Q Consensus 26 ~r~iL~~lL~~~gy~V~tas---dg~E---ALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILSA~ 96 (663)
....+++.+++.||.+..+. +.+. .++.+... .+|.||+-.... +. ++++.+.....+|||++...
T Consensus 25 ~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~--~vdgii~~~~~~--~~-~~~~~l~~~~~iPvV~~~~~ 96 (289)
T 1dbq_A 25 IIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQK--RVDGLLVMCSEY--PE-PLLAMLEEYRHIPMVVMDWG 96 (289)
T ss_dssp HHHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHHHHT--TCSEEEEECSCC--CH-HHHHHHHHTTTSCEEEEECS
T ss_pred HHHHHHHHHHHcCCeEEEEcCCCChHHHHHHHHHHHhC--CCCEEEEEeccC--CH-HHHHHHHhccCCCEEEEccC
Confidence 44566777777899877553 3332 34444443 689777643222 21 34444543367999988654
No 437
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=20.39 E-value=4.6e+02 Score=25.86 Aligned_cols=83 Identities=11% Similarity=-0.001 Sum_probs=45.8
Q ss_pred cEEEEE-e-CCHH---HHHHHHHHHHhCCCEEEEE------CCHHHHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHh
Q 006057 15 LRVLAV-D-DDPT---CLLLLETLLRRCQYHVTTT------SQAITALKLLRENKNKFDLVISDVHMPDMDGFKLLELVG 83 (663)
Q Consensus 15 lRVLIV-D-DD~~---~r~iL~~lL~~~gy~V~ta------sdg~EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir 83 (663)
-||.+| + ++.. ..+.+++.+++.|.+|... .+....+..++.. .||+|++... +.+...+++.++
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l~~~--~~d~v~~~~~--~~~a~~~~~~~~ 225 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVAMSF--NPDAIYITGY--YPEIALISRQAR 225 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHHHHT--CCSEEEECSC--HHHHHHHHHHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHHHhc--CCCEEEEccc--hhHHHHHHHHHH
Confidence 477777 4 4443 2345667777778776532 2445566666543 6899998432 233444555554
Q ss_pred c-cCCCcEEEEecCCChHH
Q 006057 84 L-EMDLPVIMLSGNGDPKL 101 (663)
Q Consensus 84 ~-~~dIPVIILSA~~d~e~ 101 (663)
. ...+|+|..........
T Consensus 226 ~~g~~~~~~~~~~~~~~~~ 244 (366)
T 3td9_A 226 QLGFTGYILAGDGADAPEL 244 (366)
T ss_dssp HTTCCSEEEECGGGCSTHH
T ss_pred HcCCCceEEeeCCcCCHHH
Confidence 3 34567655444434333
No 438
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=20.39 E-value=1.9e+02 Score=27.47 Aligned_cols=64 Identities=14% Similarity=0.321 Sum_probs=44.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCC--EE-EEECCHHHHHH-HHHhcCCCceEEEEeCCCCCCCHHHHHHHH
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQY--HV-TTTSQAITALK-LLRENKNKFDLVISDVHMPDMDGFKLLELV 82 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy--~V-~tasdg~EALe-lLre~k~~pDLVIlDv~MPdmDG~eLLe~I 82 (663)
+.+|..||-++...+..++.++..+. .| ....++.+.+. .+ ...||+|++|...+. -.++++.+
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~~fD~V~~~~~~~~--~~~~l~~~ 162 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN---DKVYDMIFIDAAKAQ--SKKFFEIY 162 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT---TSCEEEEEEETTSSS--HHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc---cCCccEEEEcCcHHH--HHHHHHHH
Confidence 57999999999999999999988764 23 35566666544 33 247999999975433 34455544
No 439
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=20.37 E-value=1.1e+02 Score=31.01 Aligned_cols=58 Identities=21% Similarity=0.308 Sum_probs=34.1
Q ss_pred CcEEEEEeCCH---HHHHHHHHHHHhCCCEEEEE---CCHH----HHHHHHHhcCCCceEEEEeCCCCCCCH
Q 006057 14 GLRVLAVDDDP---TCLLLLETLLRRCQYHVTTT---SQAI----TALKLLRENKNKFDLVISDVHMPDMDG 75 (663)
Q Consensus 14 glRVLIVDDD~---~~r~iL~~lL~~~gy~V~ta---sdg~----EALelLre~k~~pDLVIlDv~MPdmDG 75 (663)
+.+|+++|.|. ...+.++.+.+..+..+... .+.. ++++.++. ..+|+||+|. |+...
T Consensus 126 g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~~--~~~D~ViIDT--pg~~~ 193 (297)
T 1j8m_F 126 GFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFLS--EKMEIIIVDT--AGRHG 193 (297)
T ss_dssp TCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHHH--TTCSEEEEEC--CCSCC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHHh--CCCCEEEEeC--CCCcc
Confidence 56899999883 34444555555556666543 2333 34444432 3689999998 54433
No 440
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=20.33 E-value=99 Score=29.91 Aligned_cols=40 Identities=15% Similarity=0.091 Sum_probs=34.1
Q ss_pred HHHHHHHhccCCCcEEEEecCCChHHHHHHHhcCCceEEeC
Q 006057 76 FKLLELVGLEMDLPVIMLSGNGDPKLVMKGITHGACDYLLK 116 (663)
Q Consensus 76 ~eLLe~Ir~~~dIPVIILSA~~d~e~v~kAl~aGA~DYLlK 116 (663)
+++++.++ ...+|||+...-.+.+.+.++++.||+..++-
T Consensus 63 ~~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg 102 (241)
T 1qo2_A 63 LPVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVS 102 (241)
T ss_dssp HHHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEEC
T ss_pred HHHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEEC
Confidence 67778777 67899999999999999999999999887653
No 441
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=20.26 E-value=2.9e+02 Score=29.20 Aligned_cols=82 Identities=10% Similarity=0.052 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCceEEEEeCCCCCCC-----HHHHHHHHhccC-CCcEEEEecCCChHHHHHHHhcCCceEEeCCCC--
Q 006057 48 ITALKLLRENKNKFDLVISDVHMPDMD-----GFKLLELVGLEM-DLPVIMLSGNGDPKLVMKGITHGACDYLLKPVR-- 119 (663)
Q Consensus 48 ~EALelLre~k~~pDLVIlDv~MPdmD-----G~eLLe~Ir~~~-dIPVIILSA~~d~e~v~kAl~aGA~DYLlKPvs-- 119 (663)
..|++.++.... +||||-+.----. -+..+..+++.. ++||+.=+-.........|+.+||+ .|-|-++
T Consensus 164 ~~Ave~i~~~G~--~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~G~~~~~AAvAlGA~-iIEkH~tld 240 (349)
T 2wqp_A 164 KKSVEIIREAGV--PYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTLDNYACLGAVALGGS-ILERHFTDR 240 (349)
T ss_dssp HHHHHHHHHHTC--CEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSSSSHHHHHHHHHTCC-EEEEEBCSC
T ss_pred HHHHHHHHHcCC--CEEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCCcHHHHHHHHHhCCC-EEEeCCCcc
Q ss_pred -------------HHHHHHHHHHHHH
Q 006057 120 -------------IEELKNIWQHVVR 132 (663)
Q Consensus 120 -------------~eeL~~~~q~Vlr 132 (663)
+++|+..++.+.+
T Consensus 241 ~a~~G~D~~~SL~p~ef~~lv~~ir~ 266 (349)
T 2wqp_A 241 MDRPGPDIVCSMNPDTFKELKQGAHA 266 (349)
T ss_dssp TTCCSTTGGGCBCHHHHHHHHHHHHH
T ss_pred ccCCCCChhhhCCHHHHHHHHHHHHH
No 442
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=20.18 E-value=2.2e+02 Score=24.92 Aligned_cols=56 Identities=5% Similarity=-0.037 Sum_probs=36.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHHhCCCE--EEEECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 14 GLRVLAVDDDPTCLLLLETLLRRCQYH--VTTTSQAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 14 glRVLIVDDD~~~r~iL~~lL~~~gy~--V~tasdg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
+.+|..||-++...+..++.+...+.. +....+..+. +......+|+|++...+..
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~---~~~~~~~~D~i~~~~~~~~ 106 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA---FDDVPDNPDVIFIGGGLTA 106 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGG---GGGCCSCCSEEEECC-TTC
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhh---hhccCCCCCEEEECCcccH
Confidence 568899999998888888888776542 4444454332 2221146999998776655
No 443
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=20.18 E-value=1.2e+02 Score=31.45 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=39.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHHhC-CCEE-EEECCHHHHHHHHHhcCCCceEEEEeCCCCC
Q 006057 11 FPSGLRVLAVDDDPTCLLLLETLLRRC-QYHV-TTTSQAITALKLLRENKNKFDLVISDVHMPD 72 (663)
Q Consensus 11 FP~glRVLIVDDD~~~r~iL~~lL~~~-gy~V-~tasdg~EALelLre~k~~pDLVIlDv~MPd 72 (663)
+| +.+|.+||=++...+..++.+... .-.| +.+.++.+.+..+. ...||+||+|+..+.
T Consensus 111 ~p-~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~--~~~fDvIi~D~~~~~ 171 (317)
T 3gjy_A 111 YP-QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFT--PASRDVIIRDVFAGA 171 (317)
T ss_dssp ST-TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCC--TTCEEEEEECCSTTS
T ss_pred CC-CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhcc--CCCCCEEEECCCCcc
Confidence 44 458999999999888888877532 1223 34667766543221 247999999986653
No 444
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=20.16 E-value=1.3e+02 Score=27.79 Aligned_cols=57 Identities=5% Similarity=-0.052 Sum_probs=37.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHhcCCCceEEEEeCCCCCC
Q 006057 15 LRVLAVDDDPTCLLLLETLLRRCQYHVTTTSQAITALKLLRENKNKFDLVISDVHMPDM 73 (663)
Q Consensus 15 lRVLIVDDD~~~r~iL~~lL~~~gy~V~tasdg~EALelLre~k~~pDLVIlDv~MPdm 73 (663)
|+|||..-.-.+-..|.+.|.+.|++|+.+....+.+..+.. ..+.++..|+.-++.
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~--~~~~~~~~D~~d~~~ 57 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLG--ATVATLVKEPLVLTE 57 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTC--TTSEEEECCGGGCCH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccC--CCceEEecccccccH
Confidence 578999887666666666666669998866554444444432 357888888865543
No 445
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A*
Probab=20.04 E-value=2.4e+02 Score=28.54 Aligned_cols=73 Identities=26% Similarity=0.280 Sum_probs=0.0
Q ss_pred CcEEEEEeCC----HHHHHHHHHHHHhCCCEEEEECCHH-----------------------------------------
Q 006057 14 GLRVLAVDDD----PTCLLLLETLLRRCQYHVTTTSQAI----------------------------------------- 48 (663)
Q Consensus 14 glRVLIVDDD----~~~r~iL~~lL~~~gy~V~tasdg~----------------------------------------- 48 (663)
.||||++-.. ..-...|.+.|.+.|++|+.+....
T Consensus 15 ~MrIl~~~~~~~gh~~~~~~La~~L~~~GheV~v~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (398)
T 4fzr_A 15 HMRILVIAGCSEGFVMPLVPLSWALRAAGHEVLVAASENMGPTVTGAGLPFAPTCPSLDMPEVLSWDREGNRTTMPREEK 94 (398)
T ss_dssp CCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEEGGGHHHHHHTTCCEEEEESSCCHHHHHSBCTTSCBCCCCSSHH
T ss_pred ceEEEEEcCCCcchHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHHhCCCeeEecCCccchHhhhhhhccCcccccccchh
Q ss_pred -------------------HHHHHHHhcCCCceEEEEeCCCCCCCHHHHHHHHhccCCCcEEEEe
Q 006057 49 -------------------TALKLLRENKNKFDLVISDVHMPDMDGFKLLELVGLEMDLPVIMLS 94 (663)
Q Consensus 49 -------------------EALelLre~k~~pDLVIlDv~MPdmDG~eLLe~Ir~~~dIPVIILS 94 (663)
+..+.+++. +||+|+.|. ...-|.-+.+.++ +|+|.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~pDlVv~d~--~~~~~~~~a~~~g----iP~v~~~ 151 (398)
T 4fzr_A 95 PLLEHIGRGYGRLVLRMRDEALALAERW--KPDLVLTET--YSLTGPLVAATLG----IPWIEQS 151 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCSEEEEET--TCTHHHHHHHHHT----CCEEEEC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCCEEEECc--cccHHHHHHHhhC----CCEEEec
Done!