BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006060
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JVL|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
pdb|3JVM|A Chain A, Crystal Structure Of Bromodomain 2 Of Mouse Brd4
Length = 120
Score = 100 bits (248), Expect = 3e-21, Method: Composition-based stats.
Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 6/114 (5%)
Query: 368 GSKI---FKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTR 421
GSKI K CS +L+++ KH W F PVDV+ LGLHDY II+HPMD+ T+K++
Sbjct: 4 GSKISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSK 63
Query: 422 LNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475
L Y+ +EF DVRL F N YNP +V MA +L +FE ++ + E
Sbjct: 64 LESREYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 117
>pdb|3ONI|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd2
In Complex With The Inhibitor Jq1
Length = 114
Score = 99.4 bits (246), Expect = 6e-21, Method: Composition-based stats.
Identities = 49/107 (45%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 366 GTGSKIFKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRL 422
G S+ K C+ +L++L+ KH W F PVD LGLHDY II+HPMDL TVK ++
Sbjct: 3 GKLSEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKM 62
Query: 423 NKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKW 469
Y+ +EFA DVRL F N YNP DV MA +L +FE ++
Sbjct: 63 ENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRY 109
>pdb|2I8N|A Chain A, Solution Structure Of The Second Bromodomain Of Brd4
Length = 114
Score = 99.0 bits (245), Expect = 7e-21, Method: Composition-based stats.
Identities = 45/98 (45%), Positives = 60/98 (61%), Gaps = 3/98 (3%)
Query: 372 FKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYK 428
K CS +L+++ KH W F PVDV+ LGLHDY II+HPMD+ T+K++L Y+
Sbjct: 3 LKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYR 62
Query: 429 SPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFE 466
+EF DVRL F N YNP +V MA +L +FE
Sbjct: 63 DAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 100
>pdb|2DVV|A Chain A, Crystal Structure Of The Second Bromodomain Of The Human
Brd2 Protein
pdb|2E3K|A Chain A, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|B Chain B, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|C Chain C, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
pdb|2E3K|D Chain D, Crystal Structure Of The Human Brd2 Second Bromodomain In
Complexed With The Acetylated Histone H4 Peptide
Length = 112
Score = 99.0 bits (245), Expect = 8e-21, Method: Composition-based stats.
Identities = 48/107 (44%), Positives = 64/107 (59%), Gaps = 3/107 (2%)
Query: 366 GTGSKIFKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRL 422
G+ + K C+ +L++L+ KH W F PVD LGLHDY II+HPMDL TVK ++
Sbjct: 1 GSHMEQLKHCNGILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKM 60
Query: 423 NKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKW 469
Y+ +EFA DVRL F N YNP DV MA +L +FE ++
Sbjct: 61 ENRDYRDAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRY 107
>pdb|2G4A|A Chain A, Solution Structure Of A Bromodomain From Ring3 Protein
Length = 116
Score = 98.2 bits (243), Expect = 1e-20, Method: Composition-based stats.
Identities = 47/101 (46%), Positives = 61/101 (60%), Gaps = 3/101 (2%)
Query: 372 FKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYK 428
K C+ +L++L+ KH W F PVD LGLHDY II+HPMDL TVK ++ Y+
Sbjct: 3 LKHCNVILKELLSKKHAAYAWPFYKPVDASALGLHDYHDIIKHPMDLSTVKRKMENRDYR 62
Query: 429 SPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKW 469
+EFA DVRL F N YNP DV MA +L +FE ++
Sbjct: 63 DAQEFAADVRLMFSNCYKYNPPDHDVVAMARKLQDVFEFRY 103
>pdb|2LSP|B Chain B, Solution Structures Of Brd4 Second Bromodomain With
Nf-Kb-K310ac Peptide
Length = 128
Score = 96.7 bits (239), Expect = 3e-20, Method: Composition-based stats.
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Query: 369 SKIFKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKN 425
S+ K CS +L+++ KH W F PVDV+ LGLHDY II+HPMD+ T+K++L
Sbjct: 19 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAR 78
Query: 426 WYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475
Y+ +EF DVRL F N YNP +V MA +L +FE ++ + E
Sbjct: 79 EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 128
>pdb|2OUO|A Chain A, Crystal Structure Of The Bromo Domain 2 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|2YEM|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|2YEM|B Chain B, Crystal Structure Of The Second Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
Length = 130
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 47/110 (42%), Positives = 66/110 (60%), Gaps = 3/110 (2%)
Query: 369 SKIFKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKN 425
S+ K CS +L+++ KH W F PVDV+ LGLHDY II+HPMD+ T+K++L
Sbjct: 21 SEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAR 80
Query: 426 WYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475
Y+ +EF DVRL F N YNP +V MA +L +FE ++ + E
Sbjct: 81 EYRDAQEFGADVRLMFSNCYKYNPPDHEVVAMARKLQDVFEMRFAKMPDE 130
>pdb|2WP1|A Chain A, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
pdb|2WP1|B Chain B, Structure Of Brdt Bromodomain 2 Bound To An Acetylated
Histone H3 Peptide
Length = 126
Score = 93.6 bits (231), Expect = 3e-19, Method: Composition-based stats.
Identities = 45/107 (42%), Positives = 63/107 (58%), Gaps = 3/107 (2%)
Query: 372 FKSCSALLEKLMKHKH---GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYK 428
K CS +L++++ KH W F PVD LGLH+Y+ ++++PMDLGT+K +++ YK
Sbjct: 16 LKHCSEILKEMLAKKHLPYAWPFYNPVDADALGLHNYYDVVKNPMDLGTIKGKMDNQEYK 75
Query: 429 SPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475
EFA DVRL F N YNP +V MA L +FE + I E
Sbjct: 76 DAYEFAADVRLMFMNCYKYNPPDHEVVAMARTLQDVFELHFAKIPDE 122
>pdb|2DWW|A Chain A, Crystal Structure Of Bromodomain-Containing Protein 4
Length = 114
Score = 89.7 bits (221), Expect = 5e-18, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 369 SKIFKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKN 425
S+ K CS +L++ KH W F PVDV+ LGLHDY II+HP D T+K++L
Sbjct: 6 SEQLKCCSGILKEXFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPXDXSTIKSKLESR 65
Query: 426 WYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKW 469
Y+ +EF DVRL F N YNP +V A +L +FE ++
Sbjct: 66 EYRDAQEFGADVRLXFSNCYKYNPPDHEVVAXARKLQDVFEXRF 109
>pdb|2OO1|A Chain A, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|B Chain B, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|C Chain C, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|2OO1|D Chain D, Crystal Structure Of The Bromo Domain 2 Of Human
Bromodomain Containing Protein 3 (Brd3)
pdb|3S92|A Chain A, Crystal Structure Of The Second Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 113
Score = 89.0 bits (219), Expect = 9e-18, Method: Composition-based stats.
Identities = 44/104 (42%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 366 GTGSKIFKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRL 422
G S+ + C ++L +++ KH W F PVD + L LHDY II+HPMDL TVK ++
Sbjct: 3 GKLSEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKM 62
Query: 423 NKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFE 466
+ Y + FA DVRL F N YNP +V MA +L +FE
Sbjct: 63 DGREYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 106
>pdb|2E7N|A Chain A, Solution Structure Of The Second Bromodomain From Human
Bromodomain-Containing Protein 3
Length = 117
Score = 88.6 bits (218), Expect = 1e-17, Method: Composition-based stats.
Identities = 43/101 (42%), Positives = 59/101 (58%), Gaps = 3/101 (2%)
Query: 369 SKIFKSCSALLEKLMKHKHG---WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKN 425
S+ + C ++L +++ KH W F PVD + L LHDY II+HPMDL TVK +++
Sbjct: 11 SEHLRYCDSILREMLSKKHAAYAWPFYKPVDAEALELHDYHDIIKHPMDLSTVKRKMDGR 70
Query: 426 WYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFE 466
Y + FA DVRL F N YNP +V MA +L +FE
Sbjct: 71 EYPDAQGFAADVRLMFSNCYKYNPPDHEVVAMARKLQDVFE 111
>pdb|4DON|A Chain A, Brd4 Bromodomain 1 Complex With A Fragment
3,4-dihydro-3-methyl-2(1h)- Quinazolinon
Length = 145
Score = 84.3 bits (207), Expect = 2e-16, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 341 PPAESNKKSKLNGKKQAGNELAHGFGTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNL 400
PP E+ S N K+ N+L + +L+ L KH+ W F PVD L
Sbjct: 25 PPPET---SNPNKPKRQTNQLQYLL----------RVVLKTLWKHQFAWPFQQPVDAVKL 71
Query: 401 GLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQ 460
L DY+ II+ PMD+GT+K RL N+Y + +E +D F N YN G D+ +MAE
Sbjct: 72 NLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEA 131
Query: 461 LLKIFEDK 468
L K+F K
Sbjct: 132 LEKLFLQK 139
>pdb|4A9E|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9E|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9F|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9F|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-Methylpyrrolidin-2-One
pdb|4A9H|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9H|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
1-(2-Methyl-1,2,3, 4-Tetrahydroquinolin-1-Yl)ethan-1-One
pdb|4A9I|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9I|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
3-Methyl-1,2,3,4- Tetrahydroquinazolin-2-One
pdb|4A9J|A Chain A, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|B Chain B, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9J|C Chain C, N-Terminal Bromodomain Of Human Brd2 With N-(4-
Hydroxyphenyl)acetamide
pdb|4A9M|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9M|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopentyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9N|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
N-Cyclopropyl-5-(
3,5-Dimethyl-1,2-Oxazol-4-Yl)-2-Methylbenzene-1-
Sulfonamide
pdb|4A9O|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4A9O|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 5
Ethyl-3-Methyl- 4-Phenyl-1,2-Oxazole
pdb|4ALH|A Chain A, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|B Chain B, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALH|C Chain C, N-Terminal Bromodomain Of Human Brd2 With 3,5 Dimethyl-4-
Phenyl-1,2-Oxazole
pdb|4ALG|A Chain A, N-Terminal Bromodomain Of Human Brd2 With Ibet-151
Length = 154
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%)
Query: 377 ALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAED 436
+++ L KH+ W F PVD LGL DY II+ PMD+GT+K RL N+Y + E +D
Sbjct: 39 VVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQD 98
Query: 437 VRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
F N YN D+ +MA+ L KIF K
Sbjct: 99 FNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQK 130
>pdb|2YDW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YDW|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gw841819x
pdb|2YEK|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|2YEK|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd2
With The Inhibitor Gsk525762 (Ibet)
pdb|4AKN|A Chain A, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|B Chain B, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
pdb|4AKN|C Chain C, N-Terminal Bromodomain Of Human Brd2 With
Tbutyl-Phenyl-Amino-
Dimethyl-Oxazolyl-Quinoline-Carboxylic Acid
Length = 153
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 39/92 (42%), Positives = 52/92 (56%)
Query: 377 ALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAED 436
+++ L KH+ W F PVD LGL DY II+ PMD+GT+K RL N+Y + E +D
Sbjct: 39 VVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQD 98
Query: 437 VRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
F N YN D+ +MA+ L KIF K
Sbjct: 99 FNTMFTNCYIYNKPTDDIVLMAQTLEKIFLQK 130
>pdb|3JVJ|A Chain A, Crystal Structure Of The Bromodomain 1 In Mouse Brd4
pdb|3JVK|A Chain A, Crystal Structure Of Bromodomain 1 Of Mouse Brd4 In
Complex With Histone H3-K(Ac)14
pdb|3MUK|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Propionylated
Histone H3- K(Prop)23
pdb|3MUL|A Chain A, Crystal Structure Of Brd4 Bromodomain 1 With Butyrylated
Histone H3- K(Buty)14
Length = 131
Score = 83.2 bits (204), Expect = 4e-16, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 341 PPAESNKKSKLNGKKQAGNELAHGFGTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNL 400
PP E+ S N K+ N+L + +L+ L KH+ W F PVD L
Sbjct: 9 PPPET---SNPNKPKRQTNQLQYLL----------RVVLKTLWKHQFAWPFQQPVDAVKL 55
Query: 401 GLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQ 460
L DY+ II+ PMD+GT+K RL N+Y + +E +D F N YN G D+ +MAE
Sbjct: 56 NLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEA 115
Query: 461 LLKIFEDK 468
L K+F K
Sbjct: 116 LEKLFLQK 123
>pdb|2OSS|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein 4 (Brd4)
pdb|3MXF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Jq1
pdb|3P5O|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ibet Inhibitor
pdb|2YEL|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
With The Inhibitor Gw841819x
pdb|3SVF|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Dihydro-Quinazolin Ligand
pdb|3SVG|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3ZYU|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3ZYU|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With I-Bet151(Gsk1210151a)
pdb|3U5J|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Alprazolam
pdb|3U5K|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5K|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Midazolam
pdb|3U5L|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Benzo-Triazepine Ligand (Bzt-7)
pdb|4A9L|A Chain A, N-Terminal Bromodomain Of Human Brd4 With 1,3-Dimethyl-6-(
Morpholine-4-Sulfonyl)-1,2,3,
4-Tetrahydroquinazolin-2-One
pdb|3UVW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k5ack8ac)
pdb|3UVY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k16ack20ac)
pdb|3UVX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k12ack16ac)
pdb|3UW9|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|C Chain C, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|3UW9|D Chain D, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Diacetylated Histone 4 Peptide
(H4k8ack12ac)
pdb|4E96|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With The Inhibitor Pfi-1
pdb|4F3I|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With Ms417 Inhibitor
pdb|4GPJ|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Isoxazolylbenzimidazole Ligand
pdb|4HBV|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBX|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4HBY|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazolin Ligand
pdb|4J0R|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
pdb|4J0S|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A 3,5-dimethylisoxazol Ligand
Length = 127
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 341 PPAESNKKSKLNGKKQAGNELAHGFGTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNL 400
PP E+ S N K+ N+L + +L+ L KH+ W F PVD L
Sbjct: 5 PPPET---SNPNKPKRQTNQLQYLL----------RVVLKTLWKHQFAWPFQQPVDAVKL 51
Query: 401 GLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQ 460
L DY+ II+ PMD+GT+K RL N+Y + +E +D F N YN G D+ +MAE
Sbjct: 52 NLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEA 111
Query: 461 LLKIFEDK 468
L K+F K
Sbjct: 112 LEKLFLQK 119
>pdb|4HBW|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd4
In Complex With A Quinazoline Ligand
Length = 127
Score = 82.8 bits (203), Expect = 5e-16, Method: Composition-based stats.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 13/128 (10%)
Query: 341 PPAESNKKSKLNGKKQAGNELAHGFGTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNL 400
PP E+ S N K+ N+L + +L+ L KH+ W F PVD L
Sbjct: 5 PPPET---SNPNKPKRETNQLQYLL----------RVVLKTLWKHQFAWPFQQPVDAVKL 51
Query: 401 GLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQ 460
L DY+ II+ PMD+GT+K RL N+Y + +E +D F N YN G D+ +MAE
Sbjct: 52 NLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIYNKPGDDIVLMAEA 111
Query: 461 LLKIFEDK 468
L K+F K
Sbjct: 112 LEKLFLQK 119
>pdb|2WP2|A Chain A, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide.
pdb|2WP2|B Chain B, Structure Of Brdt Bromodomain Bd1 Bound To A Diacetylated
Histone H4 Peptide
Length = 120
Score = 81.3 bits (199), Expect = 2e-15, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 51/91 (56%)
Query: 378 LLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDV 437
+L+ L KH W F PVD L L DY+TII+ PMDL T+K RL +Y+ E ED
Sbjct: 22 VLKALWKHGFSWPFQQPVDAVKLKLPDYYTIIKTPMDLNTIKKRLENKYYEKASECIEDF 81
Query: 438 RLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
F N YN G D+ +MA+ L K+F K
Sbjct: 82 NTMFSNCYLYNKTGDDIVVMAQALEKLFMQK 112
>pdb|2RFJ|A Chain A, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|B Chain B, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|2RFJ|C Chain C, Crystal Structure Of The Bromo Domain 1 In Human
Bromodomain Containing Protein, Testis Specific (Brdt)
pdb|4FLP|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
pdb|4FLP|B Chain B, Crystal Structure Of The First Bromodomain Of Human Brdt
In Complex With The Inhibitor Jq1
Length = 119
Score = 80.5 bits (197), Expect = 3e-15, Method: Composition-based stats.
Identities = 40/91 (43%), Positives = 51/91 (56%)
Query: 378 LLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDV 437
+L+ L KH W F PVD L L DY+TII++PMDL T+K RL +Y E ED
Sbjct: 21 VLKDLWKHSFSWPFQRPVDAVKLQLPDYYTIIKNPMDLNTIKKRLENKYYAKASECIEDF 80
Query: 438 RLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
F N YN G D+ +MA+ L K+F K
Sbjct: 81 NTMFSNCYLYNKPGDDIVLMAQALEKLFMQK 111
>pdb|2L5E|A Chain A, Complex Between Bd1 Of Brd3 And Gata-1 C-Tail
Length = 128
Score = 78.6 bits (192), Expect = 1e-14, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 53/93 (56%)
Query: 376 SALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAE 435
+ +++ L KH+ W F PVD L L DY II++PMD+GT+K RL N+Y S E +
Sbjct: 25 NVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ 84
Query: 436 DVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
D F N YN D+ +MA+ L KIF K
Sbjct: 85 DFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQK 117
>pdb|2NXB|A Chain A, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|2NXB|B Chain B, Crystal Structure Of Human Bromodomain Containing Protein
3 (Brd3)
pdb|3S91|A Chain A, Crystal Structure Of The First Bromodomain Of Human Brd3
In Complex With The Inhibitor Jq1
Length = 123
Score = 78.2 bits (191), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 53/93 (56%)
Query: 376 SALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAE 435
+ +++ L KH+ W F PVD L L DY II++PMD+GT+K RL N+Y S E +
Sbjct: 23 NVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ 82
Query: 436 DVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
D F N YN D+ +MA+ L KIF K
Sbjct: 83 DFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQK 115
>pdb|2YW5|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Containing Protein 3
Length = 138
Score = 77.8 bits (190), Expect = 2e-14, Method: Composition-based stats.
Identities = 39/93 (41%), Positives = 53/93 (56%)
Query: 376 SALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAE 435
+ +++ L KH+ W F PVD L L DY II++PMD+GT+K RL N+Y S E +
Sbjct: 27 NVVVKTLWKHQFAWPFYQPVDAIKLNLPDYHKIIKNPMDMGTIKKRLENNYYWSASECMQ 86
Query: 436 DVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
D F N YN D+ +MA+ L KIF K
Sbjct: 87 DFNTMFTNCYIYNKPTDDIVLMAQALEKIFLQK 119
>pdb|1X0J|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|1X0J|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2
pdb|2DVQ|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVQ|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVR|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|A Chain A, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|B Chain B, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
pdb|2DVS|C Chain C, Crystal Structure Analysis Of The N-Terminal Bromodomain
Of Human Brd2 Complexed With Acetylated Histone H4
Peptide
Length = 122
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 47/89 (52%)
Query: 380 EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRL 439
+ L KH+ W F PVD LGL DY II+ P D GT+K RL N+Y + E +D
Sbjct: 16 KALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNT 75
Query: 440 TFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
F N YN D+ + A+ L KIF K
Sbjct: 76 XFTNCYIYNKPTDDIVLXAQTLEKIFLQK 104
>pdb|3AQA|A Chain A, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|B Chain B, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
pdb|3AQA|C Chain C, Crystal Structure Of The Human Brd2 Bd1 Bromodomain In
Complex With A Brd2-Interactive Compound, Bic1
Length = 128
Score = 73.6 bits (179), Expect = 3e-13, Method: Composition-based stats.
Identities = 37/89 (41%), Positives = 47/89 (52%)
Query: 380 EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRL 439
+ L KH+ W F PVD LGL DY II+ P D GT+K RL N+Y + E +D
Sbjct: 22 KALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPXDXGTIKRRLENNYYWAASECXQDFNT 81
Query: 440 TFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
F N YN D+ + A+ L KIF K
Sbjct: 82 XFTNCYIYNKPTDDIVLXAQTLEKIFLQK 110
>pdb|1JSP|B Chain B, Nmr Structure Of Cbp Bromodomain In Complex With P53
Peptide
pdb|2D82|A Chain A, Target Structure-Based Discovery Of Small Molecules That
Block Human P53 And Creb Binding Protein (Cbp)
Association
pdb|2RNY|A Chain A, Complex Structures Of Cbp Bromodomain With H4 Ack20
Peptide
pdb|2L84|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule J28
pdb|2L85|A Chain A, Solution Nmr Structures Of Cbp Bromodomain With Small
Molecule Of Hbs
Length = 121
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 391 FNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450
F PVD + LG+ DYF I+++PMDL T+K +L+ Y+ P ++ +DV L F+NA YN K
Sbjct: 35 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 94
Query: 451 GQDVHIMAEQLLKIFE 466
V+ +L ++FE
Sbjct: 95 TSRVYKFCSKLAEVFE 110
>pdb|3I3J|A Chain A, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|B Chain B, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|C Chain C, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|D Chain D, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|E Chain E, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|F Chain F, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|G Chain G, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|H Chain H, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|I Chain I, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|J Chain J, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|K Chain K, Crystal Structure Of The Bromodomain Of Human Ep300
pdb|3I3J|L Chain L, Crystal Structure Of The Bromodomain Of Human Ep300
Length = 124
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 48/76 (63%)
Query: 391 FNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450
F PVD + LG+ DYF I++ PMDL T+K +L+ Y+ P ++ +D+ L F+NA YN K
Sbjct: 38 FRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRK 97
Query: 451 GQDVHIMAEQLLKIFE 466
V+ +L ++FE
Sbjct: 98 TSRVYKYCSKLSEVFE 113
>pdb|3DWY|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3DWY|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp
pdb|3P1C|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1C|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Acetylated Lysine
pdb|3P1D|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1D|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With N-Methyl-2-Pyrrolidone (Nmp)
pdb|3P1E|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1E|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With Dimethyl Sulfoxide (Dmso)
pdb|3P1F|A Chain A, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3P1F|B Chain B, Crystal Structure Of The Bromodomain Of Human Crebbp In
Complex With A Hydroquinazolin Ligand
pdb|3SVH|A Chain A, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|3SVH|B Chain B, Crystal Structure Of The Bromdomain Of Human Crebbp In
Complex With A 3,5-Dimethylisoxazol Ligand
pdb|4A9K|A Chain A, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
pdb|4A9K|B Chain B, Bromodomain Of Human Crebbp With N-(4-Hydroxyphenyl)
Acetamide
Length = 119
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 32/78 (41%), Positives = 50/78 (64%)
Query: 391 FNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450
F PVD + LG+ DYF I+++PMDL T+K +L+ Y+ P ++ +DV L F+NA YN K
Sbjct: 33 FRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRK 92
Query: 451 GQDVHIMAEQLLKIFEDK 468
V+ +L ++FE +
Sbjct: 93 TSRVYKFCSKLAEVFEQE 110
>pdb|3Q2E|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Bromodomain And Wd Repeat-Containing Protein 1 Isoform A
(Wdr9)
Length = 123
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKE 432
K C L+ + + + F PVD+ + DY II PMD GTV+ L+ Y SP E
Sbjct: 13 KQCKELVNLIFQCEDSEPFRQPVDL--VEYPDYRDIIDTPMDFGTVRETLDAGNYDSPLE 70
Query: 433 FAEDVRLTFHNAMTYNP-KGQDVHIMAEQLLKIFEDKWVVIESEY 476
F +D+RL F NA Y P K ++ M +L +FE+K I S++
Sbjct: 71 FCKDIRLIFSNAKAYTPNKRSKIYSMTLRLSALFEEKMKKISSDF 115
>pdb|3G0L|A Chain A, Crystal Structure Of Human Bromodomain Adjacent To Zinc
Finger Domain 2b (Baz2b)
pdb|3Q2F|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With A Triazolo Ligand
pdb|4IR3|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-amino-1-(pyrimidin-2-yl)indolizin-3-yl]ethanone
(gsk2833282a)
pdb|4IR4|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
[7-(morpholin-4-yl)-1-(pyridin-2-yl)indolizin-3-
yl]ethanone (gsk2834113a)
pdb|4IR5|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(hydroxymethyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2847449a)
pdb|4IR6|A Chain A, Crystal Structure Of The Bromodomain Of Human Baz2b In
Complex With 1-
{1-[2-(methylsulfonyl)phenyl]-7-phenoxyindolizin-3-
yl}ethanone (gsk2838097a)
Length = 117
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 2/101 (1%)
Query: 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYK 428
SK CS +L ++ H+ W F PV++K + Y +I+ PMD T++ +L+ Y
Sbjct: 12 SKDLALCSMILTEMETHEDAWPFLLPVNLKLVP--GYKKVIKKPMDFSTIREKLSSGQYP 69
Query: 429 SPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKW 469
+ + FA DVRL F N T+N D+ + K FE KW
Sbjct: 70 NLETFALDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 110
>pdb|2E7O|A Chain A, Solution Structure Of The Bromodomain From Human
Bromodomain Adjacent To Zinc Finger Domain 2b
Length = 112
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 33/95 (34%), Positives = 51/95 (53%), Gaps = 2/95 (2%)
Query: 375 CSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFA 434
CS +L ++ H+ W F PV++K + Y +I+ PMD T++ +L+ Y + + FA
Sbjct: 15 CSMILTEMETHEDAWPFLLPVNLKLVP--GYKKVIKKPMDFSTIREKLSSGQYPNLETFA 72
Query: 435 EDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKW 469
DVRL F N T+N D+ + K FE KW
Sbjct: 73 LDVRLVFDNCETFNEDDSDIGRAGHNMRKYFEKKW 107
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
K ++ +L L HK W F PVD + DY+ +I+ PMDL T++ R+ + +Y+
Sbjct: 72 KDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEK 129
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
EF D+ F N YNP + AE L F K
Sbjct: 130 LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 168
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
K ++ +L L HK W F PVD + DY+ +I+ PMDL T++ R+ + +Y+
Sbjct: 72 KDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEK 129
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
EF D+ F N YNP + AE L F K
Sbjct: 130 LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 168
>pdb|3QZS|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
pdb|3QZS|B Chain B, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form I
Length = 115
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
K ++ +L L HK W F PVD + DY+ +I+ PMDL T++ R+ + +Y+
Sbjct: 13 KDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEK 70
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
EF D+ F N YNP + AE L F K
Sbjct: 71 LTEFVADMTAIFDNCRYYNPSDSPFYQCAEVLESFFVQK 109
>pdb|3QZT|A Chain A, Crystal Structure Of Bptf Bromo In Complex With Histone
H4k16ac - Form Ii
Length = 115
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
K ++ +L L HK W F PVD + DY+ +I+ PMDL T++ R+ + +Y+
Sbjct: 13 KDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEK 70
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
EF D+ F N YNP + AE L F K
Sbjct: 71 LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 109
>pdb|3MB3|A Chain A, Crystal Structure Of The Second Bromodomain Of Pleckstrin
Homology Domain Interacting Protein (Phip)
Length = 135
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/110 (35%), Positives = 55/110 (50%), Gaps = 3/110 (2%)
Query: 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKE 432
K C LL + + + F PVD+ L DY II PMD TV+ L Y+SP E
Sbjct: 24 KQCEELLNLIFQCEDSEPFRQPVDL--LEYPDYRDIIDTPMDFATVRETLEAGNYESPME 81
Query: 433 FAEDVRLTFHNAMTYNP-KGQDVHIMAEQLLKIFEDKWVVIESEYNREMR 481
+DVRL F N+ Y P K ++ M+ +L FE+ + S+Y +R
Sbjct: 82 LCKDVRLIFSNSKAYTPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSALR 131
>pdb|3O33|A Chain A, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|B Chain B, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|C Chain C, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O33|D Chain D, Crystal Structure Of Trim24 Phd-Bromo In The Free State
pdb|3O34|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(13-32)k23ac Peptide
pdb|3O35|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O35|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(23-31)k27ac Peptide
pdb|3O36|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O36|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H4(14-19)k16ac Peptide
pdb|3O37|A Chain A, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|B Chain B, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|C Chain C, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
pdb|3O37|D Chain D, Crystal Structure Of Trim24 Phd-Bromo Complexed With
H3(1-10)k4 Peptide
Length = 184
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNW--YKSP 430
+ C LL L H+ F PV L + DY+ II++PMDL T+K RL +++ Y P
Sbjct: 84 RKCERLLLFLYCHEMSLAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 140
Query: 431 KEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFED 467
++F D RL F N +N +V +L FE+
Sbjct: 141 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEE 177
>pdb|3UV2|A Chain A, Crystal Structure Of The Bromodomain Of Human
Nucleosome-Remodeling Factor Subunit Bptf
Length = 126
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 2/99 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
K ++ +L L HK W F PVD + DY+ +I+ PMDL T++ R+ + +Y+
Sbjct: 20 KDYEGLKRVLRSLQAHKMAWPFLEPVDPNDAP--DYYGVIKEPMDLATMEERVQRRYYEK 77
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
EF D+ F N YNP + AE L F K
Sbjct: 78 LTEFVADMTKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 116
>pdb|3GG3|A Chain A, Crystal Structure Of The Bromodomain Of Human Pcaf
pdb|3GG3|B Chain B, Crystal Structure Of The Bromodomain Of Human Pcaf
Length = 119
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
+++ + ++L+++ H+ W F PV K Y+ +IR PMDL T+ RL +Y S
Sbjct: 15 QLYSTLKSILQQVKSHQSAWPFMEPV--KRTEAPGYYEVIRFPMDLKTMSERLKNRYYVS 72
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
K F D++ F N YNP + + A L K F K
Sbjct: 73 KKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSK 111
>pdb|1N72|A Chain A, Structure And Ligand Of A Histone Acetyltransferase
Bromodomain
pdb|1JM4|B Chain B, Nmr Structure Of PCAF BROMODOMAIN IN COMPLEX WITH HIV-1
Tat Peptide
pdb|1WUG|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np1
pdb|1WUM|A Chain A, Complex Structure Of Pcaf Bromodomain With Small Chemical
Ligand Np2
pdb|1ZS5|A Chain A, Structure-Based Evaluation Of Selective And Non-Selective
Small Molecules That Block Hiv-1 Tat And Pcaf
Association
pdb|2RNW|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
pdb|2RNX|A Chain A, The Structural Basis For Site-Specific Lysine-Acetylated
Histone Recognition By The Bromodomains Of The Human
Transcriptional Co-Activators Pcaf And Cbp
Length = 118
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 2/99 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
+++ + ++L+++ H+ W F PV K Y+ +IR PMDL T+ RL +Y S
Sbjct: 13 QLYSTLKSILQQVKSHQSAWPFMEPV--KRTEAPGYYEVIRFPMDLKTMSERLKNRYYVS 70
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
K F D++ F N YNP + + A L K F K
Sbjct: 71 KKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSK 109
>pdb|3FKM|X Chain X, Plasmodium Falciparum Bromodomain-Containing Protein
Pf10_0328
Length = 166
Score = 60.1 bits (144), Expect = 4e-09, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 48/94 (51%)
Query: 378 LLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDV 437
L+ L K++ G +F VD K DY+ +I++P +KT+L K Y P EF +DV
Sbjct: 29 LILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPXSFSCIKTKLKKGQYAYPSEFVKDV 88
Query: 438 RLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVV 471
+L F N YN V I + + F ++ +V
Sbjct: 89 QLIFDNCSLYNTSNSVVAITGKNIETYFNNQLIV 122
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain
Fragment Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
K ++ +L L HK W F PVD + DY+ +I+ P DL T + R+ + +Y+
Sbjct: 72 KDYEGLKRVLRSLQAHKXAWPFLEPVDPNDAP--DYYGVIKEPXDLATXEERVQRRYYEK 129
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
EF D F N YNP + AE L F K
Sbjct: 130 LTEFVADXTKIFDNCRYYNPSDSPFYQCAEVLESFFVQK 168
>pdb|1E6I|A Chain A, Bromodomain From Gcn5 Complexed With Acetylated H4 Peptide
Length = 121
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 31/91 (34%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 378 LLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDV 437
+L +L H W F PV+ + + DY+ I+ PMDL T++ +L N Y+ ++F D
Sbjct: 21 ILTELQNHAAAWPFLQPVNKEEVP--DYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDA 78
Query: 438 RLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468
RL F+N YN + + A +L K F +K
Sbjct: 79 RLVFNNCRMYNGENTSYYKYANRLEKFFNNK 109
>pdb|2YYN|A Chain A, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|B Chain B, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|C Chain C, Crystal Sturcture Of Human Bromodomain Protein
pdb|2YYN|D Chain D, Crystal Sturcture Of Human Bromodomain Protein
Length = 135
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 5/97 (5%)
Query: 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNW--YKSP 430
+ C LL L H+ F PV L + DY+ II++PMDL T+K RL +++ Y P
Sbjct: 23 RKCERLLLFLYCHEMSLAFQDPVP---LTVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKP 79
Query: 431 KEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFED 467
++F D RL F N +N +V +L FE+
Sbjct: 80 EDFVADFRLIFQNCAEFNEPDSEVANAGIKLENYFEE 116
>pdb|3RCW|A Chain A, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|B Chain B, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|C Chain C, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|D Chain D, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|E Chain E, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|F Chain F, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|G Chain G, Crystal Structure Of The Bromodomain Of Human Brd1
pdb|3RCW|H Chain H, Crystal Structure Of The Bromodomain Of Human Brd1
Length = 135
Score = 56.6 bits (135), Expect = 5e-08, Method: Composition-based stats.
Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 7/118 (5%)
Query: 377 ALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAED 436
++L++L +F PV +K + DY I+HPMD T++ RL YK+ EF ED
Sbjct: 20 SVLDQLQDKDPARIFAQPVSLKEVP--DYLDHIKHPMDFATMRKRLEAQGYKNLHEFEED 77
Query: 437 VRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNREM-RIGADYEMGFHTP 493
L N M YN + + A +L D+ V+ + RE+ IG + G H P
Sbjct: 78 FDLIIDNCMKYNARDTVFYRAAVRL----RDQGGVVLRQARREVDSIGLEEASGMHLP 131
>pdb|3LXJ|A Chain A, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|B Chain B, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|C Chain C, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
pdb|3LXJ|D Chain D, Crystal Structure Of The Bromodomain Of Human Aaa Domain
Containing 2b (Atad2b)
Length = 136
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Query: 380 EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRL 439
++L K +F+ PVD++ + DY +I+ PMDL TV T+++K+ Y + K+F +D+ L
Sbjct: 22 KRLATDKRFNIFSKPVDIEEVS--DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDL 79
Query: 440 TFHNAMTYNP 449
NA+ YNP
Sbjct: 80 ICSNALEYNP 89
>pdb|3UV5|A Chain A, Crystal Structure Of The Tandem Bromodomains Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 265
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 347 KKSKLNGKKQAGNELAHGFGTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYF 406
K+ KL ++A N L + F + + +K+M W F+ PV+ K + DY+
Sbjct: 114 KEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVP--DYY 171
Query: 407 TIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN-PKGQ 452
+I +PMDL T++ ++K+ Y+S + F +DV L N++ YN P+ Q
Sbjct: 172 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 218
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 25/170 (14%)
Query: 374 SCSALLEKLMKHK----HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
+ S++LE ++ + + F+ PV+ K + DY+ II PMDL T++ + K Y S
Sbjct: 14 TLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPS 71
Query: 430 PKEFAEDVRLTFHNAMTYN-PK------GQDVHIMAEQLLKIFEDKWVVIESEYNREMRI 482
+EF E + L N+ TYN PK Q + + ++ LK EDK +E N +
Sbjct: 72 REEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINP--LL 129
Query: 483 GADYEMGFH-------TPTSRKAP---PLPPPLDMRRILDRSESITHPMD 522
D ++ F T P P P++ + + D + I +PMD
Sbjct: 130 DDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMD 179
>pdb|3HME|A Chain A, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
pdb|3HME|B Chain B, Crystal Structure Of Human Bromodomain Containing 9
Isoform 1 (Brd9)
Length = 123
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 384 KHKHGWVFNAPV-DVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFH 442
K HG+ F PV D G Y II+HPMD GT+K ++ N YKS EF D +L
Sbjct: 28 KDPHGF-FAFPVTDAIAPG---YSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCD 83
Query: 443 NAMTYNPKGQDVHIMAEQLL 462
NAMTYN + +A+++L
Sbjct: 84 NAMTYNRPDTVYYKLAKKIL 103
>pdb|3AAD|A Chain A, Structure Of The Histone Chaperone Cia/asf1-double
Bromodomain Complex Linking Histone Modifications And
Site-specific Histone Eviction
Length = 292
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 347 KKSKLNGKKQAGNELAHGFGTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYF 406
K+ KL ++A N L + F + + +K+M W F+ PV+ K + DY+
Sbjct: 147 KEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVP--DYY 204
Query: 407 TIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN-PKGQ 452
+I +PMDL T++ ++K+ Y+S + F +DV L N++ YN P+ Q
Sbjct: 205 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 251
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 45/151 (29%), Positives = 70/151 (46%), Gaps = 21/151 (13%)
Query: 389 WVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448
+ F+ PV+ K + DY+ II PMDL T++ + K Y S +EF E + L N+ TYN
Sbjct: 66 YPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 123
Query: 449 -PK------GQDVHIMAEQLLKIFEDKWVVIESEYNREMRIGADYEMGFH-------TPT 494
PK Q + + ++ LK EDK +E N + D ++ F T
Sbjct: 124 GPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINP--LLDDDDQVAFSFILDNIVTQK 181
Query: 495 SRKAP---PLPPPLDMRRILDRSESITHPMD 522
P P P++ + + D + I +PMD
Sbjct: 182 MMAVPDSWPFHHPVNKKFVPDYYKVIVNPMD 212
>pdb|3U5M|A Chain A, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|B Chain B, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|C Chain C, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|D Chain D, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|E Chain E, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|F Chain F, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|G Chain G, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|H Chain H, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|I Chain I, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|J Chain J, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|K Chain K, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5M|L Chain L, Crystal Structure Of Trim33 Phd-Bromo In The Free State
pdb|3U5N|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5N|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-20) K9me3k14ac Histone Peptide
pdb|3U5O|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5O|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-22) K9me3k14ack18ac Histone Peptide
pdb|3U5P|A Chain A, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|B Chain B, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|C Chain C, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|D Chain D, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|E Chain E, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|F Chain F, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|G Chain G, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
pdb|3U5P|H Chain H, Crystal Structure Of The Complex Of Trim33 Phd-Bromo And
H3(1-28) K9me3k14ack18ack23ac Histone Peptide
Length = 207
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/90 (35%), Positives = 45/90 (50%), Gaps = 6/90 (6%)
Query: 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNK---NWYKS 429
+ C LL L H+ F PV + +Y+ II+ PMDL TVK +L K Y+
Sbjct: 84 RKCERLLLYLYCHELSIEFQEPVPAS---IPNYYKIIKKPMDLSTVKKKLQKKHSQHYQI 140
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAE 459
P +F DVRL F N +N + V + A+
Sbjct: 141 PDDFVADVRLIFKNCERFNEMMKVVQVYAD 170
>pdb|1EQF|A Chain A, Crystal Structure Of The Double Bromodomain Module From
Human Tafii250
Length = 280
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 59/107 (55%), Gaps = 3/107 (2%)
Query: 347 KKSKLNGKKQAGNELAHGFGTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYF 406
K+ KL ++A N L + F + + +K+M W F+ PV+ K + DY+
Sbjct: 126 KEDKLARLEKAINPLLDDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVP--DYY 183
Query: 407 TIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN-PKGQ 452
+I +PMDL T++ ++K+ Y+S + F +DV L N++ YN P+ Q
Sbjct: 184 KVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 230
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 79/170 (46%), Gaps = 25/170 (14%)
Query: 374 SCSALLEKLMKHK----HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
+ S++LE ++ + + F+ PV+ K + DY+ II PMDL T++ + K Y S
Sbjct: 26 TLSSILESIINDMRDLPNTYPFHTPVNAK--VVKDYYKIITRPMDLQTLRENVRKRLYPS 83
Query: 430 PKEFAEDVRLTFHNAMTYN-PK------GQDVHIMAEQLLKIFEDKWVVIESEYNREMRI 482
+EF E + L N+ TYN PK Q + + ++ LK EDK +E N +
Sbjct: 84 REEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKEDKLARLEKAINP--LL 141
Query: 483 GADYEMGFH-------TPTSRKAP---PLPPPLDMRRILDRSESITHPMD 522
D ++ F T P P P++ + + D + I +PMD
Sbjct: 142 DDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMD 191
>pdb|3NXB|A Chain A, Crystal Structure Of The Bromodomain Of Human Cecr2
pdb|3NXB|B Chain B, Crystal Structure Of The Bromodomain Of Human Cecr2
Length = 116
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Query: 372 FKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPK 431
F + +L+ + HK W F PVD +Y+ II+ PMD+ +++ +LN Y + +
Sbjct: 18 FTAMYKVLDVVKAHKDSWPFLEPVDESYAP--NYYQIIKAPMDISSMEKKLNGGLYCTKE 75
Query: 432 EFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIF 465
EF D++ F N YN + + M++ L + F
Sbjct: 76 EFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCF 109
>pdb|1F68|A Chain A, Nmr Solution Structure Of The Bromodomain From Human Gcn5
Length = 103
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
+++ + LL ++ H W F PV K DY+ +IR P+DL T+ RL +Y +
Sbjct: 3 QLYTTLKNLLAQIKSHPSAWPFMEPV--KKSEAPDYYEVIRFPIDLKTMTERLRSRYYVT 60
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIF 465
K F D++ N YNP + A L K F
Sbjct: 61 RKLFVADLQRVIANCREYNPPDSEYCRCASALEKFF 96
>pdb|3D7C|A Chain A, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
pdb|3D7C|B Chain B, Crystal Structure Of The Bromodomain Of Human Gcn5, The
General Control Of Amino-Acid Synthesis Protein 5-Like 2
Length = 112
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 2/96 (2%)
Query: 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKS 429
+++ + LL ++ H W F PV K DY+ +IR P+DL T+ RL +Y +
Sbjct: 7 QLYTTLKNLLAQIKSHPSAWPFMEPV--KKSEAPDYYEVIRFPIDLKTMTERLRSRYYVT 64
Query: 430 PKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIF 465
K F D++ N YNP + A L K F
Sbjct: 65 RKLFVADLQRVIANCREYNPPDSEYCRCASALEKFF 100
>pdb|2KTB|B Chain B, Solution Structure Of The Second Bromodomain Of Human
Polybr Complex With An Acetylated Peptide From Histone 3
Length = 121
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%)
Query: 404 DYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLK 463
DY+ II+ P+DL T+ R+ YKS A+D+ L NA TYN G V A + K
Sbjct: 47 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKK 106
Query: 464 IFEDKWVVIE 473
IF K IE
Sbjct: 107 IFYMKKAEIE 116
>pdb|3LJW|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
pdb|3LJW|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Polybromo
Length = 120
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%)
Query: 404 DYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLK 463
DY+ II+ P+DL T+ R+ YKS A+D+ L NA TYN G V A + K
Sbjct: 46 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKK 105
Query: 464 IFEDKWVVIE 473
IF K IE
Sbjct: 106 IFYMKKAEIE 115
>pdb|3UV4|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
pdb|3UV4|B Chain B, Crystal Structure Of The Second Bromodomain Of Human
Transcription Initiation Factor Tfiid Subunit 1 (Taf1)
Length = 158
Score = 52.4 bits (124), Expect = 9e-07, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 380 EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRL 439
+K+M W F+ PV+ K + DY+ +I +PMDL T++ ++K+ Y+S + F +DV L
Sbjct: 40 QKMMAVPDSWPFHHPVNKKFVP--DYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNL 97
Query: 440 TFHNAMTYN-PKGQ 452
N++ YN P+ Q
Sbjct: 98 ILANSVKYNGPESQ 111
>pdb|3HMF|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 37/70 (52%)
Query: 404 DYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLK 463
DY+ II+ P+DL T+ R+ YKS A+D+ L NA TYN G V A + K
Sbjct: 44 DYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANSIKK 103
Query: 464 IFEDKWVVIE 473
IF K IE
Sbjct: 104 IFYMKKAEIE 113
>pdb|2DKW|A Chain A, Solution Structure Of The Bromodomain Of Human Protein
Kiaa1240
Length = 131
Score = 50.4 bits (119), Expect = 3e-06, Method: Composition-based stats.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
Query: 380 EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRL 439
++L K +F+ PV DY +I+ PMDL TV T+++K+ Y + K+F +D+ L
Sbjct: 22 KRLATDKRFNIFSKPVS-------DYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDL 74
Query: 440 TFHNAMTYNP 449
NA+ YNP
Sbjct: 75 ICSNALEYNP 84
>pdb|3HMH|A Chain A, Crystal Structure Of The Second Bromodomain Of Human
Tbp-Associated Factor Rna Polymerase 1-Like (Taf1l)
Length = 155
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 46/74 (62%), Gaps = 3/74 (4%)
Query: 380 EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRL 439
+K+M W F+ PV+ K + DY+ +I +P+DL T++ ++K+ Y+S + F +DV L
Sbjct: 37 QKMMAVPDSWPFHHPVNKKFVP--DYYKMIVNPVDLETIRKNISKHKYQSRESFLDDVNL 94
Query: 440 TFHNAMTYN-PKGQ 452
N++ YN P+ Q
Sbjct: 95 ILANSVKYNGPESQ 108
>pdb|3DAI|A Chain A, Crystal Structure Of The Bromodomain Of The Human Atad2
Length = 130
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/60 (38%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 390 VFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449
VF PVD + DY T+I+ PMDL +V ++++ + Y + K++ D+ L NA+ YNP
Sbjct: 30 VFTKPVDPDEVP--DYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEYNP 87
>pdb|2DAT|A Chain A, Solution Structure Of The Bromodomain Of Human SwiSNF
Related Matrix Associated Actin Dependent Regulator Of
Cromatin Subfamily A Member 2
Length = 123
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVH 455
L +Y+ +IR P+D +K R+ + Y+S + +DV L HNA T+N +G ++
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLCHNAQTFNLEGSQIY 102
>pdb|3TLP|A Chain A, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3TLP|B Chain B, Crystal Structure Of The Fourth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 150
Score = 46.6 bits (109), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 404 DYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKG----QDVHIMAE 459
DY+ II PMDL ++ + + Y + ED++L F NA YN +G D HI+ E
Sbjct: 63 DYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRNARHYNEEGSQVYNDAHIL-E 121
Query: 460 QLLK 463
+LLK
Sbjct: 122 KLLK 125
>pdb|2I7K|A Chain A, Solution Structure Of The Bromodomain Of Human Brd7
Protein
Length = 117
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 373 KSCSALLEKLMKHKHGWVFNAPV-DVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPK 431
++ + L+ +L + F+ PV D G Y II+HPMD T+K ++ N Y+S +
Sbjct: 11 EALNQLMRQLQRKDPSAFFSFPVTDFIAPG---YSMIIKHPMDFSTMKEKIKNNDYQSIE 67
Query: 432 EFAEDVRLTFHNAMTYNPKGQDVHIMAEQLL 462
E ++ +L NAM YN + A++LL
Sbjct: 68 ELKDNFKLMCTNAMIYNKPETIYYKAAKKLL 98
>pdb|2D9E|A Chain A, Solution Structure Of The Bromodomain Of Peregrin
pdb|2RS9|B Chain B, Solution Structure Of The Bromodomain Of Human Brpf1 In
Complex With Histone H4k5ac Peptide
Length = 121
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 379 LEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVR 438
LE+L + G +F+ PV + + DY I+ PMD T+K L Y + +F ED
Sbjct: 16 LEQLQEKDTGNIFSEPVPLSEV--PDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFN 73
Query: 439 LTFHNAMTYNPK 450
L N + YN K
Sbjct: 74 LIVSNCLKYNAK 85
>pdb|2GRC|A Chain A, 1.5 A Structure Of Bromodomain From Human Brg1 Protein, A
Central Atpase Of SwiSNF REMODELING COMPLEX
Length = 129
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVH 455
L +Y+ +IR P+D +K R+ + Y+S + +DV L NA T+N +G ++
Sbjct: 48 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY 101
>pdb|3UVD|A Chain A, Crystal Structure Of The Bromodomain Of Human
Transcription Activator Brg1 (Smarca4) In Complex With
N-Methyl-2-Pyrrolidone
Length = 124
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVH 455
L +Y+ +IR P+D +K R+ + Y+S + +DV L NA T+N +G ++
Sbjct: 49 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY 102
>pdb|2H60|A Chain A, Solution Structure Of Human Brg1 Bromodomain
Length = 128
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVH 455
L +Y+ +IR P+D +K R+ + Y+S + +DV L NA T+N +G ++
Sbjct: 44 LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLLCQNAQTFNLEGSLIY 97
>pdb|3G0J|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3G0J|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3MB4|A Chain A, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
pdb|3MB4|B Chain B, Crystal Structure Of The Fifth Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1) With Nmp
Length = 124
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448
L DY+ I+ PMD+ +++ + N Y+ ED + F+NA TYN
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYN 97
>pdb|2YQD|A Chain A, Solution Structure Of The Fifth Bromodomain From Mouse
Polybromo-1
Length = 120
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 27/47 (57%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448
L DY+ I+ PMD+ +++ + N Y+ ED + F+NA TYN
Sbjct: 51 LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYN 97
>pdb|2JNS|A Chain A, Solution Structure Of The Bromodomain-Containing Protein 4
Et Domain
Length = 90
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 41/77 (53%), Gaps = 5/77 (6%)
Query: 552 MTYDEKQKLSTNLQSLPSEKLDNIVQIIKKRNSSL-FQHXXXXXXXXXXXXAETLWELDR 610
M+Y+EK++LS ++ LP EKL +V II+ R SL + TL EL+R
Sbjct: 18 MSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELER 77
Query: 611 FVTNYKKSLSKNKRKAE 627
+VT S + KRK +
Sbjct: 78 YVT----SCLRKKRKPQ 90
>pdb|3MQM|A Chain A, Crystal Structure Of The Bromodomain Of Human Ash1l
pdb|3MQM|B Chain B, Crystal Structure Of The Bromodomain Of Human Ash1l
Length = 126
Score = 37.0 bits (84), Expect = 0.036, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 390 VFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY-- 447
+ N P KN DY+ I P+DL T++ ++ +YK+ + F D+ F NA Y
Sbjct: 36 LLNLPPKKKNA---DYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVFRNAEKYYG 92
Query: 448 --NPKGQDV 454
+P G+DV
Sbjct: 93 RKSPVGRDV 101
>pdb|2R10|A Chain A, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
pdb|2R10|B Chain B, Structure Of An Acetylated Rsc4 Tandem Bromodomain Histone
Chimera
Length = 361
Score = 35.8 bits (81), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQL 461
L +Y+ I+ PM L VK L Y +F D+ L F NA +N ++ A L
Sbjct: 243 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 302
Query: 462 LKIFEDKWVVIESEYNREMR 481
F +I+ E+ E++
Sbjct: 303 TNYFN---YLIQKEFFPELQ 319
>pdb|3K2J|A Chain A, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
pdb|3K2J|B Chain B, Crystal Structure Of The 3rd Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 130
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 404 DYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448
DY+ I+ P+ L ++T+L Y++ D+ L F NA YN
Sbjct: 55 DYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMFENAKRYN 99
>pdb|2R0V|A Chain A, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|B Chain B, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
pdb|2R0V|C Chain C, Structure Of The Rsc4 Tandem Bromodomain Acetylated At K25
Length = 346
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 3/80 (3%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQL 461
L +Y+ I+ PM L VK L Y +F D+ L F NA +N ++ A L
Sbjct: 228 LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTL 287
Query: 462 LKIFEDKWVVIESEYNREMR 481
F +I+ E+ E++
Sbjct: 288 TNYFN---YLIQKEFFPELQ 304
>pdb|3IU5|A Chain A, Crystal Structure Of The First Bromodomain Of Human
Poly-Bromodomain Containing Protein 1 (Pb1)
Length = 116
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 404 DYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447
DY+ ++ P+DL ++ +L Y D +L F+NA +Y
Sbjct: 43 DYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLFNNAKSY 86
>pdb|2R0Y|A Chain A, Structure Of The Rsc4 Tandem Bromodomain In Complex With
An Acetylated H3 Peptide
Length = 311
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQL 461
L +Y+ I+ P L VK L Y +F D L F NA +N ++ A L
Sbjct: 193 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 252
Query: 462 LKIFEDKWVVIESEYNREMR 481
F +I+ E+ E++
Sbjct: 253 TNYFN---YLIQKEFFPELQ 269
>pdb|2R0S|A Chain A, Crystal Structure Of The Rsc4 Tandem Bromodomain
Length = 285
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 402 LHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQL 461
L +Y+ I+ P L VK L Y +F D L F NA +N ++ A L
Sbjct: 187 LPEYYEIVHSPXALSIVKQNLEIGQYSKIYDFIIDXLLVFQNAHIFNDPSALIYKDATTL 246
Query: 462 LKIFEDKWVVIESEYNREMR 481
F +I+ E+ E++
Sbjct: 247 TNYFN---YLIQKEFFPELQ 263
>pdb|3VAY|A Chain A, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
pdb|3VAY|B Chain B, Crystal Structure Of 2-Haloacid Dehalogenase From
Pseudomonas Syringae Pv. Tomato Dc3000
Length = 230
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 9/70 (12%)
Query: 370 KIFKSCSALLEKLMK-HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYK 428
+IF LE L K G + N DV+ LGL DYF DLG K
Sbjct: 105 QIFPEVQPTLEILAKTFTLGVITNGNADVRRLGLADYFAFALCAEDLGIGK--------P 156
Query: 429 SPKEFAEDVR 438
P F E +R
Sbjct: 157 DPAPFLEALR 166
>pdb|1O20|A Chain A, Crystal Structure Of Gamma-glutamyl Phosphate Reductase
(tm0293) From Thermotoga Maritima At 2.00 A Resolution
Length = 427
Score = 30.4 bits (67), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 262 PVSDVVDNGIKRGHSEVASVGVPVTRVGITRPSRP 296
PV +V+D+ ++ +A V VP+ +GI SRP
Sbjct: 103 PVGEVIDSWVREDGLRIARVRVPIGPIGIIYESRP 137
>pdb|4GPT|C Chain C, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|C Chain C, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 1060
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 904 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 942
>pdb|4HB0|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
Length = 1023
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>pdb|4HAT|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|C Chain C, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
Length = 1023
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>pdb|4HB2|C Chain C, Crystal Structure Of Crm1-ran-ranbp1
Length = 1023
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>pdb|4HAX|C Chain C, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
Length = 1023
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>pdb|4HAW|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
Length = 1023
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>pdb|4HB4|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 1023
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>pdb|4HB3|C Chain C, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
Length = 1023
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>pdb|4HAZ|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
Length = 1023
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>pdb|4HAY|C Chain C, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
Length = 1023
Score = 30.0 bits (66), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
>pdb|3VYC|A Chain A, Crystal Structure Of Unliganded Saccharomyces Cerevisiae
Crm1 (Xpo1p)
Length = 1033
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 865 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 903
>pdb|3M1I|C Chain C, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 1049
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 302 ISTVENSLGLSENVEKEKRTPKANQFYRNSEFLLAKDKF 340
++ ++ +L L +N+E+ P AN+F++N F+ + F
Sbjct: 867 VNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETF 905
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.129 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,519,789
Number of Sequences: 62578
Number of extensions: 525204
Number of successful extensions: 1072
Number of sequences better than 100.0: 92
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 963
Number of HSP's gapped (non-prelim): 97
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)