Query 006060
Match_columns 662
No_of_seqs 355 out of 1524
Neff 4.9
Searched_HMMs 46136
Date Thu Mar 28 17:46:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006060.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006060hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1474 Transcription initiati 100.0 3.8E-39 8.2E-44 367.4 14.1 259 366-624 218-534 (640)
2 cd05496 Bromo_WDR9_II Bromodom 99.9 1.6E-27 3.4E-32 219.9 13.5 108 369-478 4-112 (119)
3 cd05495 Bromo_cbp_like Bromodo 99.9 1.9E-27 4.2E-32 215.7 12.5 104 369-472 2-106 (108)
4 cd05497 Bromo_Brdt_I_like Brom 99.9 2.1E-27 4.5E-32 215.2 11.8 102 370-471 5-106 (107)
5 cd05505 Bromo_WSTF_like Bromod 99.9 7.6E-27 1.6E-31 208.2 10.7 95 372-468 2-96 (97)
6 cd05506 Bromo_plant1 Bromodoma 99.9 1.9E-26 4.1E-31 205.0 10.6 99 371-469 1-99 (99)
7 cd05503 Bromo_BAZ2A_B_like Bro 99.9 1.9E-26 4.2E-31 205.0 10.6 96 372-469 2-97 (97)
8 cd05504 Bromo_Acf1_like Bromod 99.9 3.4E-26 7.4E-31 209.8 12.4 104 367-472 9-112 (115)
9 cd05498 Bromo_Brdt_II_like Bro 99.9 3.9E-26 8.5E-31 204.1 10.5 98 372-469 2-102 (102)
10 cd05500 Bromo_BDF1_2_I Bromodo 99.9 9.1E-26 2E-30 202.7 11.8 101 368-468 2-102 (103)
11 cd05507 Bromo_brd8_like Bromod 99.9 8.2E-26 1.8E-30 203.6 11.4 100 370-471 3-102 (104)
12 cd05499 Bromo_BDF1_2_II Bromod 99.9 1E-25 2.2E-30 201.8 10.7 98 372-469 2-102 (102)
13 cd05502 Bromo_tif1_like Bromod 99.9 2.4E-25 5.2E-30 201.9 12.7 101 369-472 3-106 (109)
14 cd05510 Bromo_SPT7_like Bromod 99.9 2.5E-25 5.4E-30 203.4 11.5 104 368-473 5-110 (112)
15 cd05508 Bromo_RACK7 Bromodomai 99.9 2.6E-25 5.6E-30 199.1 11.1 97 369-468 2-98 (99)
16 cd05509 Bromo_gcn5_like Bromod 99.9 2.9E-25 6.3E-30 198.2 11.2 99 371-471 2-100 (101)
17 cd05501 Bromo_SP100C_like Brom 99.9 4.8E-25 1E-29 198.4 12.1 98 370-472 2-99 (102)
18 cd05516 Bromo_SNF2L2 Bromodoma 99.9 1.4E-24 2.9E-29 196.7 10.1 100 371-472 2-107 (107)
19 cd05513 Bromo_brd7_like Bromod 99.9 2.9E-24 6.3E-29 192.1 10.7 92 371-464 2-93 (98)
20 cd05511 Bromo_TFIID Bromodomai 99.9 5.6E-24 1.2E-28 194.3 12.1 104 373-478 3-106 (112)
21 cd05528 Bromo_AAA Bromodomain; 99.9 5.3E-24 1.1E-28 194.6 11.7 101 370-472 3-107 (112)
22 cd05512 Bromo_brd1_like Bromod 99.9 4.1E-24 9E-29 190.9 10.6 92 371-464 2-93 (98)
23 cd05519 Bromo_SNF2 Bromodomain 99.9 2.4E-23 5.1E-28 187.1 9.8 96 372-469 2-103 (103)
24 cd05515 Bromo_polybromo_V Brom 99.9 3.4E-23 7.3E-28 187.0 9.8 96 372-469 2-103 (105)
25 cd05524 Bromo_polybromo_I Brom 99.9 7E-23 1.5E-27 187.4 10.6 101 371-473 3-109 (113)
26 cd05529 Bromo_WDR9_I_like Brom 99.9 1.5E-22 3.2E-27 189.0 12.2 102 368-470 22-126 (128)
27 smart00297 BROMO bromo domain. 99.9 1.4E-22 3.1E-27 180.5 11.3 101 369-471 6-106 (107)
28 cd05520 Bromo_polybromo_III Br 99.9 1.1E-22 2.3E-27 183.4 9.8 91 376-468 6-102 (103)
29 cd05517 Bromo_polybromo_II Bro 99.9 1.2E-22 2.7E-27 183.0 9.5 94 372-467 2-101 (103)
30 cd05525 Bromo_ASH1 Bromodomain 99.9 2.7E-22 5.8E-27 181.8 10.8 96 371-468 3-104 (106)
31 cd05518 Bromo_polybromo_IV Bro 99.9 2E-22 4.4E-27 181.6 9.5 94 373-468 3-102 (103)
32 cd04369 Bromodomain Bromodomai 99.9 1.6E-21 3.6E-26 168.0 9.6 96 372-469 2-99 (99)
33 PF00439 Bromodomain: Bromodom 99.9 1.9E-21 4.1E-26 166.2 9.0 84 375-460 1-84 (84)
34 cd05522 Bromo_Rsc1_2_II Bromod 99.8 8.6E-21 1.9E-25 171.2 10.6 95 371-467 5-102 (104)
35 cd05521 Bromo_Rsc1_2_I Bromodo 99.8 7.8E-21 1.7E-25 172.3 10.2 96 371-470 2-103 (106)
36 cd05492 Bromo_ZMYND11 Bromodom 99.8 4.5E-20 9.8E-25 168.1 11.6 98 375-472 5-106 (109)
37 KOG1245 Chromatin remodeling c 99.7 7.5E-18 1.6E-22 204.8 7.8 95 375-472 1306-1400(1404)
38 cd05526 Bromo_polybromo_VI Bro 99.7 1.6E-16 3.5E-21 145.0 10.5 98 371-472 4-107 (110)
39 COG5076 Transcription factor i 99.7 9.5E-17 2.1E-21 173.4 9.7 106 369-476 144-252 (371)
40 KOG1472 Histone acetyltransfer 99.5 5.3E-14 1.2E-18 160.8 5.9 102 369-472 605-706 (720)
41 cd05494 Bromodomain_1 Bromodom 99.4 1.7E-13 3.6E-18 126.0 3.7 81 370-450 3-90 (114)
42 KOG0955 PHD finger protein BR1 99.2 8.3E-12 1.8E-16 148.2 4.4 108 368-477 563-670 (1051)
43 cd05491 Bromo_TBP7_like Bromod 98.9 6.5E-10 1.4E-14 102.7 4.5 41 411-451 63-103 (119)
44 KOG0008 Transcription initiati 98.9 2.5E-09 5.5E-14 127.4 6.4 94 375-470 1387-1480(1563)
45 KOG1827 Chromatin remodeling c 98.7 2.5E-08 5.4E-13 113.5 8.0 100 369-470 51-156 (629)
46 KOG0386 Chromatin remodeling c 98.7 2.5E-08 5.4E-13 116.9 6.9 100 373-474 1027-1132(1157)
47 KOG1474 Transcription initiati 98.7 4E-09 8.7E-14 121.9 0.2 91 381-471 3-93 (640)
48 KOG1472 Histone acetyltransfer 98.6 2.6E-08 5.7E-13 114.8 5.7 76 369-453 292-367 (720)
49 KOG0008 Transcription initiati 98.6 6E-08 1.3E-12 116.0 8.5 104 372-477 1263-1366(1563)
50 KOG1828 IRF-2-binding protein 98.1 6.9E-07 1.5E-11 96.3 -0.5 94 373-468 22-115 (418)
51 KOG1828 IRF-2-binding protein 97.7 1.8E-05 3.9E-10 85.6 3.5 83 378-463 216-298 (418)
52 COG5076 Transcription factor i 96.9 0.00027 5.8E-09 77.2 0.5 93 377-471 270-362 (371)
53 cd05493 Bromo_ALL-1 Bromodomai 95.3 0.024 5.3E-07 54.0 4.9 64 412-475 59-122 (131)
54 KOG0644 Uncharacterized conser 89.2 0.27 5.9E-06 58.5 3.1 60 409-468 1050-1109(1113)
55 KOG0732 AAA+-type ATPase conta 84.7 0.48 1E-05 58.3 1.8 65 387-451 532-601 (1080)
56 KOG1827 Chromatin remodeling c 57.0 1.6 3.5E-05 51.2 -2.7 75 388-464 213-287 (629)
57 KOG0644 Uncharacterized conser 47.2 8.7 0.00019 46.6 1.1 68 393-463 88-185 (1113)
58 PF14372 DUF4413: Domain of un 46.8 74 0.0016 28.8 6.8 51 424-474 3-53 (101)
59 PF07462 MSP1_C: Merozoite sur 37.0 33 0.00071 40.0 3.6 20 408-427 437-459 (574)
60 TIGR02606 antidote_CC2985 puta 33.6 57 0.0012 27.8 3.7 27 416-442 12-38 (69)
61 PRK00083 frr ribosome recyclin 24.2 1.8E+02 0.004 29.4 6.1 46 202-247 89-134 (185)
62 PF11116 DUF2624: Protein of u 23.6 62 0.0013 29.1 2.3 65 550-614 13-81 (85)
63 TIGR00496 frr ribosome recycli 23.5 2E+02 0.0043 28.9 6.1 46 202-247 80-125 (176)
64 cd00520 RRF Ribosome recycling 22.2 2.2E+02 0.0048 28.5 6.2 46 202-247 85-130 (179)
65 PF03693 RHH_2: Uncharacterise 20.9 1.2E+02 0.0026 26.7 3.5 26 416-441 15-40 (80)
No 1
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=100.00 E-value=3.8e-39 Score=367.40 Aligned_cols=259 Identities=44% Similarity=0.658 Sum_probs=184.1
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 006060 366 GTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (662)
Q Consensus 366 ~~~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~ 445 (662)
..+.++++.|..||.+||.|+++|||+.|||++.||+||||+|||+||||+||++||.++.|.++.+|++||||||+|||
T Consensus 218 ~~~~~~lk~C~~iLk~l~~~k~awpF~~PVD~v~LgLpDY~~IIK~PMDLgTIK~kL~~~~Y~~~~eF~~DVRL~F~Ncm 297 (640)
T KOG1474|consen 218 KLTVELLKQCLSILKRLMKHKHAWPFNEPVDVVKLGLPDYHDIIKHPMDLGTIKKKLEKGEYKSAEEFAADVRLTFDNCM 297 (640)
T ss_pred cccHHHHHHHHHHHHHHHhccCCCCcCCCcCHHhcCCcchhhhcCCCccHHHHHhhhcccccCCHHHHHHHHHHHHHHHH
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-cC-----CCC----CC--------CCCCCCC-CCChh
Q 006060 446 TYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNREMRIGADYE-MG-----FHT----PT--------SRKAPPL-PPPLD 506 (662)
Q Consensus 446 ~YN~~gS~V~~~A~~Lek~FE~~~~~i~~~~~~E~~~~~d~e-~~-----~~~----p~--------srkap~~-p~~~e 506 (662)
+||++|++||.||..|+++|+.+|+.+...+........... +. ... +. ....+.. ..+.+
T Consensus 298 ~YNp~g~dV~~Ma~~L~~~Fe~rw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (640)
T KOG1474|consen 298 TYNPEGSDVYAMAKKLQEVFEERWASMPLEIEESESAVKEEAGMASSDQIPSNSVEGPRSSSFESRESASEPSSELMSEE 377 (640)
T ss_pred hcCCCCCHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccccccccCcccccchhcccccCcccccccHH
Confidence 999999999999999999999999998765543221110000 00 000 00 0000000 00011
Q ss_pred HHHh-hhcccccc------------CCCCC-CCC----CCCC-CCC----CCCCCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 006060 507 MRRI-LDRSESIT------------HPMDS-RLK----PIST-TPS----SRTPAPKKPKAKDPHKRDMTYDEKQKLSTN 563 (662)
Q Consensus 507 ~rr~-ld~ses~t------------qp~ks-~~K----p~s~-~p~----sr~pa~KK~ka~dp~kR~MT~EEK~kLs~~ 563 (662)
++.. ........ .+... ... .... .+. ......+........++.||..|+..|...
T Consensus 378 e~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~t~~~~~~l~~~ 457 (640)
T KOG1474|consen 378 ERKKLLAELKLLLKDVPPQLIALLQRPVSKPPRKIEEELESDKRPLVTGKLIKEKNKKEKAANENKRDMTAPEKAKLKEL 457 (640)
T ss_pred hhhhhHhhhhcchhhhhHHHHhhhhccccCccccccccccccccccchhhhhhhhhccccccccccccccccccccchhh
Confidence 1100 00000000 00000 000 0000 000 000111223344556889999999999999
Q ss_pred hcC-CChhcHHHHHHHH--HhhcCCCCCCCCeEEEECCCCC-------------HHHHHHHHHHHHHHHhhhhhhhh
Q 006060 564 LQS-LPSEKLDNIVQII--KKRNSSLFQHDDEIEVDIDSVD-------------AETLWELDRFVTNYKKSLSKNKR 624 (662)
Q Consensus 564 I~~-Lp~EkL~~VVqII--ke~~P~l~~~~dEIEIDIDsLd-------------~~TLreL~ryV~~~kK~~sK~Kr 624 (662)
+.. +++..+..+++|+ ..+.+.+.+.+++|++|++.++ .+++|++.+|+..+...+++..+
T Consensus 458 ~~~~~~p~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vd~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~ 534 (640)
T KOG1474|consen 458 LQNLLPPNKLESIVEILKPEKRQLDLSQNDDEIELDLDSVDGSQSREPSSNPLEIETIRETLKLSTERELELSKASS 534 (640)
T ss_pred ccCCCCCccccCcccccchhhhcccccccccchhhcccccccccccCCCcccchhhhhhccccchhhHHHHHHHHhh
Confidence 999 5999999999999 4567788888999999999999 99999999999998776665543
No 2
>cd05496 Bromo_WDR9_II Bromodomain; WDR9 repeat II_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.6e-27 Score=219.94 Aligned_cols=108 Identities=37% Similarity=0.572 Sum_probs=103.7
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
+.|.+.|..||+.|++|+.+|+|+.|||+.. +||||+||++||||+||++||.+|.|.++.+|..||+|||.||++||
T Consensus 4 ~~w~~~c~~il~~l~~~~~s~~F~~PVd~~~--~pdY~~iIk~PmDL~tIk~kL~~~~Y~~~~ef~~D~~lif~Na~~yN 81 (119)
T cd05496 4 SDWKKQCKELVNLMWDCEDSEPFRQPVDLLK--YPDYRDIIDTPMDLGTVKETLFGGNYDDPMEFAKDVRLIFSNSKSYT 81 (119)
T ss_pred HHHHHHHHHHHHHHHhCCccccccCCCChhh--cCcHHHHhCCcccHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5799999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 449 PK-GQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (662)
Q Consensus 449 ~~-gS~V~~~A~~Lek~FE~~~~~i~~~~~~ 478 (662)
++ ++.||.+|..|+++|+++|..+...|..
T Consensus 82 ~~~~s~i~~~a~~L~~~F~~~~~~l~~~~~~ 112 (119)
T cd05496 82 PNKRSRIYSMTLRLSALFEEHIKKIISDWKS 112 (119)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 85 9999999999999999999999888754
No 3
>cd05495 Bromo_cbp_like Bromodomain, cbp_like subfamily. Cbp (CREB binding protein or CREBBP) is an acetyltransferase acting on histone, which gives a specific tag for transcriptional activation and also acetylates non-histone proteins. CREBBP binds specifically to phosphorylated CREB protein and augments the activity of phosphorylated CREB to activate transcription of cAMP-responsive genes. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=1.9e-27 Score=215.67 Aligned_cols=104 Identities=36% Similarity=0.612 Sum_probs=100.5
Q ss_pred hHHHHHHHHHHHHHHcC-CCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 369 SKIFKSCSALLEKLMKH-KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~-k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
+++.+.|..+|++|+++ +.+|+|..||+++.+++||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 2 ~~l~~~~~~il~~l~~~~~~s~~F~~PV~~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~y 81 (108)
T cd05495 2 EELRQALMPTLEKLYKQDPESLPFRQPVDPKLLGIPDYFDIVKNPMDLSTIRRKLDTGQYQDPWQYVDDVWLMFDNAWLY 81 (108)
T ss_pred HHHHHHHHHHHHHHHHcCcccchhcCCCCccccCCCcHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999 99999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
|+++|.++.+|..|+++|++.+..+
T Consensus 82 N~~~s~i~~~a~~l~~~F~~~~~~~ 106 (108)
T cd05495 82 NRKTSRVYKYCTKLAEVFEQEIDPV 106 (108)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988765
No 4
>cd05497 Bromo_Brdt_I_like Bromodomain, Brdt_like subfamily, repeat I. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.95 E-value=2.1e-27 Score=215.25 Aligned_cols=102 Identities=42% Similarity=0.688 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 006060 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (662)
Q Consensus 370 ~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~ 449 (662)
++.-.+..||..|++|+.+|+|.+|||+..+++||||+||++||||+||++||+++.|.++.+|..||+|||.||+.||+
T Consensus 5 q~~~~~~~il~~l~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yN~ 84 (107)
T cd05497 5 QLQYLLKVVLKALWKHKFAWPFQQPVDAVKLNLPDYHKIIKTPMDLGTIKKRLENNYYWSASECIQDFNTMFTNCYIYNK 84 (107)
T ss_pred HHHHHHHHHHHHHHhCCcCccccCCCCcccccCCcHHHHHcCcccHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 33344468899999999999999999999888999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 006060 450 KGQDVHIMAEQLLKIFEDKWVV 471 (662)
Q Consensus 450 ~gS~V~~~A~~Lek~FE~~~~~ 471 (662)
++|+++.+|..|+++|+++++.
T Consensus 85 ~~s~i~~~A~~l~~~f~~~l~~ 106 (107)
T cd05497 85 PGDDVVLMAQTLEKLFLQKLAQ 106 (107)
T ss_pred CCCHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998875
No 5
>cd05505 Bromo_WSTF_like Bromodomain; Williams syndrome transcription factor-like subfamily (WSTF-like). The Williams-Beuren syndrome deletion transcript 9 is a putative transcriptional regulator. WSTF was found to play a role in vitamin D-mediated transcription as part of two chromatin remodeling complexes, WINAC and WICH. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.94 E-value=7.6e-27 Score=208.21 Aligned_cols=95 Identities=31% Similarity=0.556 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q 006060 372 FKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKG 451 (662)
Q Consensus 372 ~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~g 451 (662)
+++|..||+.|++++.+|+|..||++.. +||||++|++||||+||++||+.|.|.++.+|.+||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05505 2 LQKCEEILSKILKYRFSWPFREPVTADE--AEDYKKVITNPMDLQTMQTKCSCGSYSSVQEFLDDMKLVFSNAEKYYENG 79 (97)
T ss_pred HHHHHHHHHHHHhCCCcccccCCCChhh--cccHHHHcCCcCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999876 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 006060 452 QDVHIMAEQLLKIFEDK 468 (662)
Q Consensus 452 S~V~~~A~~Lek~FE~~ 468 (662)
|.|+.+|..|+++|..+
T Consensus 80 s~i~~~a~~le~~f~~~ 96 (97)
T cd05505 80 SYVLSCMRKTEQCCVNL 96 (97)
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999999875
No 6
>cd05506 Bromo_plant1 Bromodomain, uncharacterized subfamily specific to plants. Might function as a global transcription factor. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.9e-26 Score=204.96 Aligned_cols=99 Identities=70% Similarity=1.189 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 006060 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~ 450 (662)
+++.|..||+.|++++.+++|..||++...++|+||++|++||||+||++||+++.|.++.+|..||+|||.||+.||++
T Consensus 1 ~~~~c~~il~~l~~~~~~~~F~~pv~~~~~~~p~Y~~~I~~P~dl~tI~~kL~~~~Y~s~~ef~~D~~li~~Na~~yn~~ 80 (99)
T cd05506 1 VMKQCGTLLRKLMKHKWGWVFNAPVDVVALGLPDYFDIIKKPMDLGTVKKKLEKGEYSSPEEFAADVRLTFANAMRYNPP 80 (99)
T ss_pred CHHHHHHHHHHHHhCCCCccccCCCCccccCCCCHHHHHcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 36889999999999999999999999987779999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q 006060 451 GQDVHIMAEQLLKIFEDKW 469 (662)
Q Consensus 451 gS~V~~~A~~Lek~FE~~~ 469 (662)
+|.++.+|..|++.|+++|
T Consensus 81 ~s~i~~~a~~l~~~fe~~w 99 (99)
T cd05506 81 GNDVHTMAKELLKIFETRW 99 (99)
T ss_pred CCHHHHHHHHHHHHHHHhC
Confidence 9999999999999999987
No 7
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1.9e-26 Score=205.04 Aligned_cols=96 Identities=36% Similarity=0.738 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q 006060 372 FKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKG 451 (662)
Q Consensus 372 ~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~g 451 (662)
+.+|..||..|++|+.+++|..||++.. +|+||++|++||||+||++||++|.|.++.+|..||+|||.||+.||+++
T Consensus 2 ~~~c~~il~~l~~~~~~~~F~~pv~~~~--~p~Y~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~~ 79 (97)
T cd05503 2 LALCETILDEMEAHEDAWPFLEPVNTKL--VPGYRKIIKKPMDFSTIREKLESGQYKTLEEFAEDVRLVFDNCETFNEDD 79 (97)
T ss_pred HHHHHHHHHHHHcCCCchhhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCCCC
Confidence 5789999999999999999999999987 89999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q 006060 452 QDVHIMAEQLLKIFEDKW 469 (662)
Q Consensus 452 S~V~~~A~~Lek~FE~~~ 469 (662)
+.++.+|..|+++|+.+|
T Consensus 80 s~i~~~a~~l~~~f~~~~ 97 (97)
T cd05503 80 SEVGRAGHNMRKFFEKRW 97 (97)
T ss_pred CHHHHHHHHHHHHHHHhC
Confidence 999999999999999987
No 8
>cd05504 Bromo_Acf1_like Bromodomain; Acf1_like or BAZ1A_like subfamily. Bromo adjacent to zinc finger 1A (BAZ1A) was identified as a novel human bromodomain gene by cDNA library screening. The Drosophila homologue, Acf1, is part of the CHRAC (chromatin accessibility complex) and regulates ISWI-induced nucleosome remodeling. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.4e-26 Score=209.75 Aligned_cols=104 Identities=36% Similarity=0.640 Sum_probs=100.3
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 006060 367 TGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (662)
Q Consensus 367 ~~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~ 446 (662)
.+...+..|..||..|+.++.+|+|..||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.
T Consensus 9 ~~~~~~~~c~~il~~l~~~~~s~~F~~pvd~~~--~pdY~~vI~~PmDL~tI~~kL~~~~Y~s~~~f~~Dv~LI~~Na~~ 86 (115)
T cd05504 9 HGPLNLSALEQLLVEIVKHKDSWPFLRPVSKIE--VPDYYDIIKKPMDLGTIKEKLNMGEYKLAEEFLSDIQLVFSNCFL 86 (115)
T ss_pred CCHHHHHHHHHHHHHHHhCCCchhhcCCCCccc--cccHHHHhcCcccHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999876 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 447 YNPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 447 YN~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
||+++|.++.+|..|+++|+++++.+
T Consensus 87 yN~~~s~i~~~A~~l~~~f~~~~~~~ 112 (115)
T cd05504 87 YNPEHTSVYKAGTRLQRFFIKRCRKL 112 (115)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999875
No 9
>cd05498 Bromo_Brdt_II_like Bromodomain, Brdt_like subfamily, repeat II. Human Brdt is a testis-specific member of the BET subfamily of bromodomain proteins; the first bromodomain in Brdt has been shown to be essential for male germ cell differentiation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=3.9e-26 Score=204.11 Aligned_cols=98 Identities=49% Similarity=0.925 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 372 FKSCSALLEKLMKH---KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 372 ~k~C~~IL~~L~k~---k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
+++|..||+.|+++ +.+++|..||++...++||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~il~~l~~~~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~Pmdl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~yn 81 (102)
T cd05498 2 LKFCSGILKELFSKKHKAYAWPFYKPVDPEALGLHDYHDIIKHPMDLSTIKKKLDNREYADAQEFAADVRLMFSNCYKYN 81 (102)
T ss_pred hhHHHHHHHHHHhCCCccccCcccCcCCccccCCCcHHHHccCCCcHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 67899999999999 789999999999877899999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 006060 449 PKGQDVHIMAEQLLKIFEDKW 469 (662)
Q Consensus 449 ~~gS~V~~~A~~Lek~FE~~~ 469 (662)
+++|.++.+|..|++.|+++|
T Consensus 82 ~~~s~i~~~a~~l~~~fe~~~ 102 (102)
T cd05498 82 PPDHPVHAMARKLQDVFEDRW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999987
No 10
>cd05500 Bromo_BDF1_2_I Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat I. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=9.1e-26 Score=202.68 Aligned_cols=101 Identities=34% Similarity=0.503 Sum_probs=97.5
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
...+.++|..||+.|++++.+++|..|||+..+++||||++|++||||+||++||.++.|.++.+|..||+|||.||+.|
T Consensus 2 t~~~~~~~~~ii~~l~~~~~a~~F~~pv~~~~~~~p~Y~~~I~~P~dL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 81 (103)
T cd05500 2 TKHQHKFLLSSIRSLKRLKDARPFLVPVDPVKLNIPHYPTIIKKPMDLGTIERKLKSNVYTSVEEFTADFNLMVDNCLTF 81 (103)
T ss_pred CHHHHHHHHHHHHHHHcCCCChhhcCCCCcccccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999999999999988889999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDK 468 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~ 468 (662)
|+++|.++.+|..|++.|++.
T Consensus 82 N~~~s~~~~~A~~l~~~fe~~ 102 (103)
T cd05500 82 NGPEHPVSQMGKRLQAAFEKH 102 (103)
T ss_pred CCCCCHHHHHHHHHHHHHHHh
Confidence 999999999999999999975
No 11
>cd05507 Bromo_brd8_like Bromodomain, brd8_like subgroup. In mammals, brd8 (bromodomain containing 8) interacts with the thyroid hormone receptor in a ligand-dependent fashion and enhances thyroid hormone-dependent activation from thyroid response elements. Brd8 is thought to be a nuclear receptor coactivator. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=8.2e-26 Score=203.61 Aligned_cols=100 Identities=29% Similarity=0.423 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 006060 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (662)
Q Consensus 370 ~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~ 449 (662)
.|.+.|..||+.|+.|+.+++|.+||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||+
T Consensus 3 ~~~~~~~~il~~l~~~~~a~~F~~pV~~~~--~p~Y~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~ 80 (104)
T cd05507 3 AWKKAILLVYRTLASHRYASVFLKPVTEDI--APGYHSVVYRPMDLSTIKKNIENGTIRSTAEFQRDVLLMFQNAIMYNS 80 (104)
T ss_pred HHHHHHHHHHHHHHcCCCCHhhcCCCCccc--cCCHHHHhCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 478999999999999999999999999865 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 006060 450 KGQDVHIMAEQLLKIFEDKWVV 471 (662)
Q Consensus 450 ~gS~V~~~A~~Lek~FE~~~~~ 471 (662)
++|.++.+|..|+..|.+++..
T Consensus 81 ~~s~v~~~A~~l~~~~~~~~~~ 102 (104)
T cd05507 81 SDHDVYLMAVEMQREVMSQIQQ 102 (104)
T ss_pred CCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999887653
No 12
>cd05499 Bromo_BDF1_2_II Bromodomain. BDF1/BDF2 like subfamily, restricted to fungi, repeat II. BDF1 and BDF2 are yeast transcription factors involved in the expression of a wide range of genes, including snRNAs; they are required for sporulation and DNA repair and protect histone H4 from deacetylation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=1e-25 Score=201.81 Aligned_cols=98 Identities=48% Similarity=0.904 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHcC---CCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 372 FKSCSALLEKLMKH---KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 372 ~k~C~~IL~~L~k~---k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
++.|.+||..|+++ ..+|+|+.|||+..+++||||++|++||||++|++||+++.|.++.+|..||+|||.||+.||
T Consensus 2 ~~~c~~Il~~l~~~~~~~~s~~F~~pvd~~~~~~pdY~~~I~~P~dL~~I~~kl~~~~Y~s~~ef~~D~~li~~N~~~yn 81 (102)
T cd05499 2 LKFCEEVLKELMKPKHSAYNWPFLDPVDPVALNIPNYFSIIKKPMDLGTISKKLQNGQYQSAKEFERDVRLIFKNCYTFN 81 (102)
T ss_pred hHHHHHHHHHHHcccCCcccchhcCCCCccccCCCCHHHHhcCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 57899999999995 459999999999966699999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHH
Q 006060 449 PKGQDVHIMAEQLLKIFEDKW 469 (662)
Q Consensus 449 ~~gS~V~~~A~~Lek~FE~~~ 469 (662)
+++|.++.+|..|++.|+.+|
T Consensus 82 ~~~s~~~~~a~~l~~~fe~~~ 102 (102)
T cd05499 82 PEGTDVYMMGHQLEEVFNDKW 102 (102)
T ss_pred CCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999876
No 13
>cd05502 Bromo_tif1_like Bromodomain; tif1_like subfamily. Tif1 (transcription intermediary factor 1) is a member of the tripartite motif (TRIM) protein family, which is characterized by a particular domain architecture. It functions by recruiting coactivators and/or corepressors to modulate transcription. Vertebrate Tif1-gamma, also labeled E3 ubiquitin-protein ligase TRIM33, plays a role in the control of hematopoiesis. Its homologue in Xenopus laevis, Ectodermin, has been shown to function in germ-layer specification and control of cell growth during embryogenesis. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.93 E-value=2.4e-25 Score=201.85 Aligned_cols=101 Identities=33% Similarity=0.601 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhc---CCCCCHHHHHHHHHHHHHhhh
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNK---NWYKSPKEFAEDVRLTFHNAM 445 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~---g~Y~s~~EF~~DVrLIF~Nc~ 445 (662)
+.++++|..||..|++|+.+++|..||++ . +|+||++|++||||+||++||+. +.|.++.+|..||+|||+||+
T Consensus 3 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~-~--~p~Y~~iI~~PmdL~tI~~kL~~~~~~~Y~s~~~f~~D~~li~~Na~ 79 (109)
T cd05502 3 PIDQRKCERLLLELYCHELSLPFHEPVSP-S--VPNYYKIIKTPMDLSLIRKKLQPKSPQHYSSPEEFVADVRLMFKNCY 79 (109)
T ss_pred HHHHHHHHHHHHHHHhCCCChhhcCCCCC-C--CCCHHHHCCCCccHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999998 3 89999999999999999999998 699999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 446 TYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 446 ~YN~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
.||+++|.++.+|..|++.|+++|..+
T Consensus 80 ~yN~~~s~i~~~a~~l~~~f~~~~~~~ 106 (109)
T cd05502 80 KFNEEDSEVAQAGKELELFFEEQLKEI 106 (109)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999876
No 14
>cd05510 Bromo_SPT7_like Bromodomain; SPT7_like subfamily. SPT7 is a yeast protein that functions as a component of the transcription regulatory histone acetylation (HAT) complexes SAGA, SALSA, and SLIK. SAGA is involved in the RNA polymerase II-dependent transcriptional regulation of about 10% of all yeast genes. The SPT7 bromodomain has been shown to weakly interact with acetylated histone H3, but not H4. The human representative of this subfamily is cat eye syndrome critical region protein 2 (CECR2). Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.5e-25 Score=203.36 Aligned_cols=104 Identities=30% Similarity=0.473 Sum_probs=98.1
Q ss_pred chHHHHHHHHHHHHHHcC-CCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 006060 368 GSKIFKSCSALLEKLMKH-KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~-k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~ 446 (662)
..++...|..||..|++| +++|+|..||++.. +||||++|++||||+||++||.++.|.++.+|.+||+|||.||+.
T Consensus 5 ~~~~~~~~~~il~~l~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~Li~~N~~~ 82 (112)
T cd05510 5 QEEFYESLDKVLNELKTYTEHSTPFLTKVSKRE--APDYYDIIKKPMDLGTMLKKLKNLQYKSKAEFVDDLNLIWKNCLL 82 (112)
T ss_pred HHHHHHHHHHHHHHHHhcCccccchhcCCChhh--cCCHHHHhcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH
Confidence 468999999999999999 89999999999986 999999999999999999999999999999999999999999999
Q ss_pred hCCCCC-HHHHHHHHHHHHHHHHHHHHH
Q 006060 447 YNPKGQ-DVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 447 YN~~gS-~V~~~A~~Lek~FE~~~~~i~ 473 (662)
||++++ .++.+|..|++.|+..+..|+
T Consensus 83 yN~~~s~~~~~~A~~l~~~~~~~~~~~~ 110 (112)
T cd05510 83 YNSDPSHPLRRHANFMKKKAEHLLKLIP 110 (112)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHCC
Confidence 999866 678999999999999888764
No 15
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.6e-25 Score=199.13 Aligned_cols=97 Identities=29% Similarity=0.462 Sum_probs=91.6
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
.++...+..+|.+|+ |+.+|+|.+||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.||
T Consensus 2 ~~l~~~L~~~~~~~~-~~~s~~F~~PV~~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~Na~~YN 78 (99)
T cd05508 2 DQLSKLLKFALERMK-QPGAEPFLKPVDLEQ--FPDYAQYVFKPMDLSTLEKNVRKKAYGSTDAFLADAKWILHNAIIYN 78 (99)
T ss_pred hHHHHHHHHHHHHHh-CcCcchhcCCCChhh--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 456777888999999 999999999999976 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 006060 449 PKGQDVHIMAEQLLKIFEDK 468 (662)
Q Consensus 449 ~~gS~V~~~A~~Lek~FE~~ 468 (662)
+++|.++.+|..|.+.|+..
T Consensus 79 ~~~s~i~~~A~~l~~~~~~e 98 (99)
T cd05508 79 GGDHKLTQAAKAIVKICEQE 98 (99)
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999998864
No 16
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=2.9e-25 Score=198.17 Aligned_cols=99 Identities=32% Similarity=0.613 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 006060 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~ 450 (662)
++.+|..||+.|++|+.+++|..||++.. +|+||++|++||||+||++||.++.|.++.+|..||+|||+||+.||++
T Consensus 2 ~~~~~~~il~~l~~~~~a~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 79 (101)
T cd05509 2 LYTQLKKVLDSLKNHKSAWPFLEPVDKEE--APDYYDVIKKPMDLSTMEEKLENGYYVTLEEFVADLKLIFDNCRLYNGP 79 (101)
T ss_pred hHHHHHHHHHHHHhCCCchhhcCCCChhh--cCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 57889999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHH
Q 006060 451 GQDVHIMAEQLLKIFEDKWVV 471 (662)
Q Consensus 451 gS~V~~~A~~Lek~FE~~~~~ 471 (662)
+|.++.+|..|+..|++.+++
T Consensus 80 ~s~~~~~a~~l~~~f~~~~~~ 100 (101)
T cd05509 80 DTEYYKCANKLEKFFWKKLKE 100 (101)
T ss_pred CCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999998865
No 17
>cd05501 Bromo_SP100C_like Bromodomain, SP100C_like subfamily. The SP100C protein is a splice variant of SP100, a major component of PML-SP100 nuclear bodies (NBs), which are poorly understood. It is covalently modified by SUMO-1 and may play a role in processes at the chromatin level. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.92 E-value=4.8e-25 Score=198.37 Aligned_cols=98 Identities=30% Similarity=0.410 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 006060 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (662)
Q Consensus 370 ~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~ 449 (662)
+.++.|+.||..|++++.+++|..+ +. ++||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||+
T Consensus 2 ~~l~~ce~il~~l~~~~~s~~f~~~--p~--~~pdY~~iIk~PMDL~tI~~kL~~~~Y~s~~ef~~D~~Lif~N~~~yN~ 77 (102)
T cd05501 2 EELLKCEFLLLKVYCMSKSGFFISK--PY--YIRDYCQGIKEPMWLNKVKERLNERVYHTVEGFVRDMRLIFHNHKLFYK 77 (102)
T ss_pred HHHHHHHHHHHHHHhCcccccccCC--CC--CCCchHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHcC
Confidence 3567899999999999999999663 33 3999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 006060 450 KGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 450 ~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
++ .++.+|..|++.|+++|+.+
T Consensus 78 ~~-~~~~~a~~L~~~Fek~~~~~ 99 (102)
T cd05501 78 DD-DFGQVGITLEKKFEKNFKEV 99 (102)
T ss_pred CC-HHHHHHHHHHHHHHHHHHHH
Confidence 99 99999999999999999875
No 18
>cd05516 Bromo_SNF2L2 Bromodomain, SNF2L2-like subfamily, specific to animals. SNF2L2 (SNF2-alpha) or SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2 is a global transcriptional activator, which cooperates with nuclear hormone receptors to boost transcriptional activation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=1.4e-24 Score=196.74 Aligned_cols=100 Identities=27% Similarity=0.429 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 006060 371 IFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc 444 (662)
+.+.|..||+.|+.+++ +++|.+||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||.||
T Consensus 2 l~~~~~~il~~v~~~~d~~g~~~s~~F~~~p~~~~--~pdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na 79 (107)
T cd05516 2 LTKKMNKIVDVVIKYKDSDGRQLAEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLEDLEKDVMLLCQNA 79 (107)
T ss_pred HHHHHHHHHHHHHhhhCcCCCEeeHHhhcCCCccc--CCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHHH
Confidence 67889999999999987 899999999876 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
+.||++||.+|.+|..|+++|++.+.++
T Consensus 80 ~~yN~~~s~i~~~a~~l~~~f~~~~~~~ 107 (107)
T cd05516 80 QTFNLEGSLIYEDSIVLQSVFKSARQKI 107 (107)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999988753
No 19
>cd05513 Bromo_brd7_like Bromodomain, brd7_like subgroup. The BRD7 gene encodes a nuclear protein that has been shown to inhibit cell growth and the progression of the cell cycle by regulating cell-cycle genes at the transcriptional level. BRD7 has been identified as a gene involved in nasopharyngeal carcinoma. The protein interacts with acetylated histone H3 via its bromodomain. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=2.9e-24 Score=192.07 Aligned_cols=92 Identities=33% Similarity=0.465 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 006060 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~ 450 (662)
+.+.|..||+.|+.++.+++|..||+... +||||++|++||||+||++||+++.|.++.+|..||+|||.||+.||++
T Consensus 2 l~~~l~~il~~l~~~~~~~~F~~PV~~~~--~pdY~~vIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 79 (98)
T cd05513 2 LQKALEQLIRQLQRKDPHGFFAFPVTDFI--APGYSSIIKHPMDFSTMKEKIKNNDYQSIEEFKDDFKLMCENAMKYNKP 79 (98)
T ss_pred HHHHHHHHHHHHHcCCccccccCcCCccc--cccHHHHHcCccCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56789999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006060 451 GQDVHIMAEQLLKI 464 (662)
Q Consensus 451 gS~V~~~A~~Lek~ 464 (662)
+|.+|.+|..|...
T Consensus 80 ~s~~~~~A~~L~~~ 93 (98)
T cd05513 80 DTIYYKAAKKLLHS 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999653
No 20
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=5.6e-24 Score=194.27 Aligned_cols=104 Identities=29% Similarity=0.539 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCC
Q 006060 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQ 452 (662)
Q Consensus 373 k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS 452 (662)
..+..||.+|++|+.+++|..||++.. +|+||++|++||||+||++||.++.|.++.+|.+||+|||.||+.||+++|
T Consensus 3 ~~l~~ii~~l~~~~~s~~F~~pv~~~~--~p~Y~~~I~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s 80 (112)
T cd05511 3 FILDEIVNELKNLPDSWPFHTPVNKKK--VPDYYKIIKRPMDLQTIRKKISKHKYQSREEFLEDIELIVDNSVLYNGPDS 80 (112)
T ss_pred HHHHHHHHHHHhCCCchhhcCCCChhh--cccHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 346889999999999999999999987 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 453 DVHIMAEQLLKIFEDKWVVIESEYNR 478 (662)
Q Consensus 453 ~V~~~A~~Lek~FE~~~~~i~~~~~~ 478 (662)
.++.+|..|.+.|+..+..++.++..
T Consensus 81 ~i~~~A~~l~~~~~~~~~~~~~~~~~ 106 (112)
T cd05511 81 VYTKKAKEMLELAEELLAEREEKLTQ 106 (112)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999877643
No 21
>cd05528 Bromo_AAA Bromodomain; sub-family co-occurring with AAA domains. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine. The structure(2DKW) in this alignment is an uncharacterized protein predicted from analysis of cDNA clones from human fetal liver
Probab=99.91 E-value=5.3e-24 Score=194.61 Aligned_cols=101 Identities=29% Similarity=0.453 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 006060 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (662)
Q Consensus 370 ~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~ 449 (662)
++...|..||++|+.|+.+|+|.+||++.. +||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.||+
T Consensus 3 ~lr~~L~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~ 80 (112)
T cd05528 3 ELRLFLRDVLKRLASDKRFNAFTKPVDEEE--VPDYYEIIKQPMDLQTILQKLDTHQYLTAKDFLKDIDLIVTNALEYNP 80 (112)
T ss_pred HHHHHHHHHHHHHHhCCCchhhcCCCCccc--cCcHHHHHcCCCCHHHHHHHHcCCCcCCHHHHHHHHHHHHHHHHHHCC
Confidence 567788999999999999999999999987 999999999999999999999999999999999999999999999999
Q ss_pred C----CCHHHHHHHHHHHHHHHHHHHH
Q 006060 450 K----GQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 450 ~----gS~V~~~A~~Lek~FE~~~~~i 472 (662)
+ |+.++.+|..|++.|.+++..+
T Consensus 81 ~~s~~~s~i~~~A~~L~~~~~~~~~~~ 107 (112)
T cd05528 81 DRDPADKLIRSRACELRDEVHAMIEAE 107 (112)
T ss_pred CCCccccHHHHHHHHHHHHHHHHHHhc
Confidence 9 4799999999999999988764
No 22
>cd05512 Bromo_brd1_like Bromodomain; brd1_like subfamily. BRD1 is a mammalian gene which encodes for a nuclear protein assumed to be a transcriptional regulator. BRD1 has been implicated with brain development and susceptibility to schizophrenia and bipolar affective disorder. Bromodomains are 110 amino acid long domains that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.91 E-value=4.1e-24 Score=190.91 Aligned_cols=92 Identities=26% Similarity=0.478 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 006060 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~ 450 (662)
+...|+.+|++|+.|+.+|+|.+|||+.. +||||++|++||||+||++||.++.|.++.+|..||+|||.||+.||++
T Consensus 2 ~~~~l~~il~~l~~~~~~~~F~~pVd~~~--~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~yN~~ 79 (98)
T cd05512 2 LEVLLRKTLDQLQEKDTAEIFSEPVDLSE--VPDYLDHIKQPMDFSTMRKKLESQRYRTLEDFEADFNLIINNCLAYNAK 79 (98)
T ss_pred HHHHHHHHHHHHHhCCCchhhcCCCCccc--cCCHHHHhcCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 44678999999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHH
Q 006060 451 GQDVHIMAEQLLKI 464 (662)
Q Consensus 451 gS~V~~~A~~Lek~ 464 (662)
+|.+|++|..|++.
T Consensus 80 ~s~~~~~A~~l~~~ 93 (98)
T cd05512 80 DTIFYRAAVRLRDQ 93 (98)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999999864
No 23
>cd05519 Bromo_SNF2 Bromodomain, SNF2-like subfamily, specific to fungi. SNF2 is a yeast protein involved in transcriptional activation, it is the catalytic component of the SWI/SNF ATP-dependent chromatin remodeling complex. The protein is essential for the regulation of gene expression (both positive and negative) of a large number of genes. The SWI/SNF complex changes chromatin structure by altering DNA-histone contacts within the nucleosome, which results in a re-positioning of the nucleosome and facilitates or represses the binding of gene-specific transcription factors. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.89 E-value=2.4e-23 Score=187.07 Aligned_cols=96 Identities=31% Similarity=0.459 Sum_probs=90.0
Q ss_pred HHHHHHHHHHHHcCC------CCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 006060 372 FKSCSALLEKLMKHK------HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (662)
Q Consensus 372 ~k~C~~IL~~L~k~k------~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~ 445 (662)
.+.|..|++.|+.++ .+++|.+||+... +||||++|++||||+||++||+.|.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~i~~~v~~~~~~~~~~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~ 79 (103)
T cd05519 2 KAAMLEIYDAVLNCEDETGRKLSELFLEKPSKKL--YPDYYVIIKRPIALDQIKRRIEGRAYKSLEEFLEDFHLMFANAR 79 (103)
T ss_pred HHHHHHHHHHHHHhcCcCCCchhHHhcCCCCCCC--CcCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 577999999999655 4899999998877 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 006060 446 TYNPKGQDVHIMAEQLLKIFEDKW 469 (662)
Q Consensus 446 ~YN~~gS~V~~~A~~Lek~FE~~~ 469 (662)
.||+++|.++.+|..|++.|+.+|
T Consensus 80 ~yn~~~s~i~~~A~~l~~~f~~~~ 103 (103)
T cd05519 80 TYNQEGSIVYEDAVEMEKAFKKKY 103 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999764
No 24
>cd05515 Bromo_polybromo_V Bromodomain, polybromo repeat V. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.89 E-value=3.4e-23 Score=186.98 Aligned_cols=96 Identities=21% Similarity=0.369 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 006060 372 FKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (662)
Q Consensus 372 ~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~ 445 (662)
++.|..||+.|..+++ +++|..||+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~~~~~i~~~~d~~~~~~a~~F~~~p~~~~--~pdYy~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~l~~~Na~ 79 (105)
T cd05515 2 QQKLWELYNAVKNYTDGRGRRLSLIFMRLPSKSE--YPDYYDVIKKPIDMEKIRSKIEGNQYQSLDDMVSDFVLMFDNAC 79 (105)
T ss_pred hHHHHHHHHHHHHhhCcCCCcccHHhccCCCccc--CCcHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHH
Confidence 4678888888887654 799999998887 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHH
Q 006060 446 TYNPKGQDVHIMAEQLLKIFEDKW 469 (662)
Q Consensus 446 ~YN~~gS~V~~~A~~Lek~FE~~~ 469 (662)
.||+++|.+|.+|..|+++|.+..
T Consensus 80 ~yN~~~s~i~~~A~~L~~~~~~~~ 103 (105)
T cd05515 80 KYNEPDSQIYKDALTLQKVLLETK 103 (105)
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998765
No 25
>cd05524 Bromo_polybromo_I Bromodomain, polybromo repeat I. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=7e-23 Score=187.39 Aligned_cols=101 Identities=20% Similarity=0.322 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 006060 371 IFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc 444 (662)
..+.|..||+.|++++. +.+|..+++... +||||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 3 ~~~~c~~il~~l~~~~~~~g~~l~~~F~~~p~~~~--~PdYy~iI~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na 80 (113)
T cd05524 3 PIAVCQELYDTIRNYKSEDGRILCESFIRVPKRRN--EPEYYEVVSNPIDLLKIQQKLKTEEYDDVDDLTADFELLINNA 80 (113)
T ss_pred HHHHHHHHHHHHHhhcccCCCchhHHHhcCCCccc--CCCHHHHhCCccCHHHHHHHhCcCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999998655 468999888666 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
+.||+++|.+|.+|..|+++|++.+.++.
T Consensus 81 ~~yN~~~s~~~~~A~~L~~~f~~~~~~~~ 109 (113)
T cd05524 81 KAYYKPDSPEHKDACKLWELFLSARNEVL 109 (113)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999887764
No 26
>cd05529 Bromo_WDR9_I_like Bromodomain; WDR9 repeat I_like subfamily. WDR9 is a human gene located in the Down Syndrome critical region-2 of chromosome 21. It encodes for a nuclear protein containing WD40 repeats and two bromodomains, which may function as a transcriptional regulator involved in chromatin remodeling and play a role in embryonic development. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.88 E-value=1.5e-22 Score=189.00 Aligned_cols=102 Identities=27% Similarity=0.418 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHHHHH---cCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 006060 368 GSKIFKSCSALLEKLM---KHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~---k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc 444 (662)
...+...|..+|.+|+ .++.+++|..||++.. .+|+||++|++||||+||++||.++.|.++.+|..||+|||.||
T Consensus 22 ~~~~~~~i~~~l~~l~~~~~~~~~~~F~~pv~~~~-~~p~Y~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li~~Na 100 (128)
T cd05529 22 RDEERERLISGLDKLLLSLQLEIAEYFEYPVDLRA-WYPDYWNRVPVPMDLETIRSRLENRYYRSLEALRHDVRLILSNA 100 (128)
T ss_pred CHHHHHHHHHHHHHHHhcccCcccccccCCCCccc-cCCcHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 5778899999999999 8999999999999983 39999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHH
Q 006060 445 MTYNPKGQDVHIMAEQLLKIFEDKWV 470 (662)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~~~ 470 (662)
+.||+++|.++.+|..|++.|...+.
T Consensus 101 ~~yN~~~s~i~~~A~~l~~~~~~~l~ 126 (128)
T cd05529 101 ETFNEPNSEIAKKAKRLSDWLLRILS 126 (128)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999998764
No 27
>smart00297 BROMO bromo domain.
Probab=99.88 E-value=1.4e-22 Score=180.50 Aligned_cols=101 Identities=43% Similarity=0.641 Sum_probs=97.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
..+...|..|+..+.+|+.+++|..||+... +|+||++|++||||++|++||++|.|.++.+|..||+|||.||+.||
T Consensus 6 ~~~~~~~~~i~~~~~~~~~~~~F~~~~~~~~--~p~Y~~~i~~P~dl~~I~~kl~~~~Y~s~~ef~~D~~li~~Na~~~n 83 (107)
T smart00297 6 KKLQSLLKAVLDKLDSHRLSWPFLKPVDRKE--APDYYDIIKKPMDLSTIKKKLENGKYSSVEEFVADVQLMFSNAKTYN 83 (107)
T ss_pred HHHHHHHHHHHHHHHhCccchhhccCCChhh--ccCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5678889999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 006060 449 PKGQDVHIMAEQLLKIFEDKWVV 471 (662)
Q Consensus 449 ~~gS~V~~~A~~Lek~FE~~~~~ 471 (662)
++++.++.+|..|...|+..|+.
T Consensus 84 ~~~s~~~~~a~~l~~~f~~~~~~ 106 (107)
T smart00297 84 GPDSEVYKDAKKLEKFFEKKLRE 106 (107)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998875
No 28
>cd05520 Bromo_polybromo_III Bromodomain, polybromo repeat III. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.1e-22 Score=183.39 Aligned_cols=91 Identities=25% Similarity=0.419 Sum_probs=82.8
Q ss_pred HHHHHHHHcCC------CCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 006060 376 SALLEKLMKHK------HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (662)
Q Consensus 376 ~~IL~~L~k~k------~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~ 449 (662)
..|++.|+.++ .+++|.+||+... +||||++|++||||+||++||.++.|.++.+|+.||+|||.||+.||+
T Consensus 6 ~~l~~~i~~~~~~~g~~~s~pF~~~p~~~~--~PdYy~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~~yN~ 83 (103)
T cd05520 6 WQLYDTIRNARNNQGQLLAEPFLKLPSKRK--YPDYYQEIKNPISLQQIRTKLKNGEYETLEELEADLNLMFENAKRYNV 83 (103)
T ss_pred HHHHHHHHhhcCCCCCCccHhhhcCCCccc--CCCHHHHcCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 44555555544 4899999999877 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHH
Q 006060 450 KGQDVHIMAEQLLKIFEDK 468 (662)
Q Consensus 450 ~gS~V~~~A~~Lek~FE~~ 468 (662)
++|.+|.+|..|+++|+++
T Consensus 84 ~~s~i~~~A~~L~~~f~~~ 102 (103)
T cd05520 84 PNSRIYKDAEKLQKLMQAK 102 (103)
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999864
No 29
>cd05517 Bromo_polybromo_II Bromodomain, polybromo repeat II. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.88 E-value=1.2e-22 Score=182.98 Aligned_cols=94 Identities=30% Similarity=0.477 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 006060 372 FKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (662)
Q Consensus 372 ~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~ 445 (662)
.+.|..||+.|+.+.+ +++|..+++... +||||++|++||||+||++||..+.|.++.+|..||+|||.||+
T Consensus 2 ~~~~~~l~~~i~~~~d~~gr~~~~~F~~lp~~~~--~pdYy~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~lm~~Na~ 79 (103)
T cd05517 2 KQILEQLLEAVMTATDPSGRLISELFQKLPSKVL--YPDYYAVIKEPIDLKTIAQRIQSGYYKSIEDMEKDLDLMVKNAK 79 (103)
T ss_pred hHHHHHHHHHHHHhhCcCCCChhHHHhcCCCCCC--CCCHHHHcCCCcCHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHH
Confidence 4678999999998765 699999998887 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHH
Q 006060 446 TYNPKGQDVHIMAEQLLKIFED 467 (662)
Q Consensus 446 ~YN~~gS~V~~~A~~Lek~FE~ 467 (662)
.||+++|.++.+|..|+++|+.
T Consensus 80 ~yN~~~s~i~~~A~~l~~~f~~ 101 (103)
T cd05517 80 TFNEPGSQVYKDANAIKKIFTA 101 (103)
T ss_pred HHCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999985
No 30
>cd05525 Bromo_ASH1 Bromodomain; ASH1_like sub-family. ASH1 (absent, small, or homeotic 1) is a member of the trithorax-group in Drosophila melanogaster, an epigenetic transcriptional regulator of HOX genes. Drosophila ASH1 has been shown to methylate specific lysines in histones H3 and H4. Mammalian ASH1 has been shown to methylate histone H3. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.87 E-value=2.7e-22 Score=181.76 Aligned_cols=96 Identities=22% Similarity=0.369 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 006060 371 IFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc 444 (662)
+...|..||+.|..+++ +++|.++++... +||||++|++||||+||++||.+|.|.++.+|..||.|||.||
T Consensus 3 l~~~l~~i~~~i~~~kd~~g~~~s~~F~~lp~k~~--~pdYy~~I~~P~dL~tI~~kl~~~~Y~s~~ef~~D~~l~f~Na 80 (106)
T cd05525 3 LAQVLKEICDAIITYKDSNGQSLAIPFINLPSKKK--NPDYYERITDPVDLSTIEKQILTGYYKTPEAFDSDMLKVFRNA 80 (106)
T ss_pred HHHHHHHHHHHHHHhhccCCCcccHhhccCCCccc--CCchhhhCCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 45668888888887655 699999998877 9999999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHH
Q 006060 445 MTYNPKGQDVHIMAEQLLKIFEDK 468 (662)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~ 468 (662)
+.||+++|.++.+|..|+++|++.
T Consensus 81 ~~yn~~~S~i~~~A~~L~~~f~~~ 104 (106)
T cd05525 81 EKYYGRKSPIGRDVCRLRKAYYQA 104 (106)
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHc
Confidence 999999999999999999999863
No 31
>cd05518 Bromo_polybromo_IV Bromodomain, polybromo repeat IV. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.87 E-value=2e-22 Score=181.61 Aligned_cols=94 Identities=30% Similarity=0.470 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHcC------CCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 006060 373 KSCSALLEKLMKH------KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (662)
Q Consensus 373 k~C~~IL~~L~k~------k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~ 446 (662)
++|..|++.|... ..+.+|..||+... +||||++|++||||+||++||.++.|.++.+|..||+|||.||+.
T Consensus 3 ~~~~~l~~~v~~~~d~~gr~~~~~F~~~p~~~~--~pdYy~iIk~Pmdl~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~ 80 (103)
T cd05518 3 KRMLALFLYVLEYREGSGRRLCDLFMEKPSKKD--YPDYYKIILEPIDLKTIEHNIRNDKYATEEELMDDFKLMFRNARH 80 (103)
T ss_pred HHHHHHHHHHHHhhccCCCcccHHHhcCCCccc--CccHHHHcCCCcCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4466666666654 44889999999887 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHH
Q 006060 447 YNPKGQDVHIMAEQLLKIFEDK 468 (662)
Q Consensus 447 YN~~gS~V~~~A~~Lek~FE~~ 468 (662)
||+++|.||.+|..|+++|+++
T Consensus 81 yN~~~s~i~~~A~~le~~~~~~ 102 (103)
T cd05518 81 YNEEGSQVYEDANILEKVLKEK 102 (103)
T ss_pred HCCCCCHHHHHHHHHHHHHHhc
Confidence 9999999999999999999863
No 32
>cd04369 Bromodomain Bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.85 E-value=1.6e-21 Score=167.96 Aligned_cols=96 Identities=43% Similarity=0.604 Sum_probs=91.6
Q ss_pred HHHHHHHHHHHHcC--CCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 006060 372 FKSCSALLEKLMKH--KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (662)
Q Consensus 372 ~k~C~~IL~~L~k~--k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~ 449 (662)
...|..|++.|+.+ +.+++|..||++.. +|+|+++|++||||++|+.||.++.|.++.+|..||+|||.||+.||+
T Consensus 2 ~~~~~~i~~~l~~~~~~~~~~F~~~~~~~~--~~~Y~~~i~~P~~l~~I~~kl~~~~Y~s~~~f~~D~~li~~Na~~~n~ 79 (99)
T cd04369 2 KKKLRSLLDALKKLKRDLSEPFLEPVDPKE--APDYYEVIKNPMDLSTIKKKLKNGEYKSLEEFEADVRLIFSNAKTYNG 79 (99)
T ss_pred HHHHHHHHHHHHhhcccccHHHhcCCChhc--CCCHHHHHhCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 35799999999999 99999999999966 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHH
Q 006060 450 KGQDVHIMAEQLLKIFEDKW 469 (662)
Q Consensus 450 ~gS~V~~~A~~Lek~FE~~~ 469 (662)
.++.++.+|..|+..|++.|
T Consensus 80 ~~~~~~~~a~~l~~~~~~~~ 99 (99)
T cd04369 80 PGSPIYKDAKKLEKLFEKLL 99 (99)
T ss_pred CCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999998754
No 33
>PF00439 Bromodomain: Bromodomain; InterPro: IPR001487 Bromodomains are found in a variety of mammalian, invertebrate and yeast DNA-binding proteins []. Bromodomains can interact with acetylated lysine []. In some proteins, the classical bromodomain has diverged to such an extent that parts of the region are either missing or contain an insertion (e.g., mammalian protein HRX, Caenorhabditis elegans hypothetical protein ZK783.4, yeast protein YTA7). The bromodomain may occur as a single copy, or in duplicate. The precise function of the domain is unclear, but it may be involved in protein-protein interactions and may play a role in assembly or activity of multi-component complexes involved in transcriptional activation [].; GO: 0005515 protein binding; PDB: 3P1C_A 4A9K_B 3SVH_A 3P1E_B 3P1F_A 1JSP_B 2L85_A 3P1D_B 3DWY_B 2D82_A ....
Probab=99.85 E-value=1.9e-21 Score=166.16 Aligned_cols=84 Identities=46% Similarity=0.779 Sum_probs=79.6
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHH
Q 006060 375 CSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDV 454 (662)
Q Consensus 375 C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V 454 (662)
|..||+.|++|+.+++|..||++.. +|+|+++|++||||++|++||++|.|.++.+|..||++||.||+.||+++|.+
T Consensus 1 C~~il~~l~~~~~~~~F~~~~~~~~--~p~y~~~i~~P~dL~~I~~kl~~~~Y~s~~~f~~Dv~~i~~Na~~yn~~~s~~ 78 (84)
T PF00439_consen 1 CREILEELMKHPISSPFSKPVDPKE--YPDYYEIIKNPMDLSTIRKKLENGKYKSIEEFEADVRLIFQNARRYNPPDSPI 78 (84)
T ss_dssp HHHHHHHHHTSTTGGGGSSSTHTTT--STTHHHHSSSS--HHHHHHHHHTTSSSSHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred CHHHHHHHHcCCCchhhcCCCChhh--CCCHHHHHhhccchhhhhHHhhccchhhHHHHHHHHHHHHHHHHHHCCCcCHH
Confidence 8999999999999999999998777 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 006060 455 HIMAEQ 460 (662)
Q Consensus 455 ~~~A~~ 460 (662)
|.+|++
T Consensus 79 ~~~A~~ 84 (84)
T PF00439_consen 79 YKAAEK 84 (84)
T ss_dssp HHHHHH
T ss_pred HHHhcC
Confidence 999974
No 34
>cd05522 Bromo_Rsc1_2_II Bromodomain, repeat II in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=8.6e-21 Score=171.17 Aligned_cols=95 Identities=25% Similarity=0.266 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHHc---CCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 371 IFKSCSALLEKLMK---HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 371 l~k~C~~IL~~L~k---~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
-++.+...|..+.. ++.+++|..+|+... +||||++|++||||+||++||..+.|.++.+|..||+|||.||+.|
T Consensus 5 ~~~~i~~~v~~~~d~~g~~l~~~F~~~p~~~~--~pdYy~~I~~Pmdl~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~y 82 (104)
T cd05522 5 RIKNILKGLRKERDENGRLLTLHFEKLPDKAR--EPEYYQEISNPISLDDIKKKVKRRKYKSFDQFLNDLNLMFENAKLY 82 (104)
T ss_pred HHHHHHHHHHHHhCcCCCcccHHHhcCCCccc--cCcHHHHhCCCcCHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34444455555544 446899999999876 8999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFED 467 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~ 467 (662)
|+++|.++.+|..|++.|+.
T Consensus 83 n~~~s~i~~~A~~l~~~f~~ 102 (104)
T cd05522 83 NENDSQEYKDAVLLEKEARL 102 (104)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999986
No 35
>cd05521 Bromo_Rsc1_2_I Bromodomain, repeat I in Rsc1/2_like subfamily, specific to fungi. Rsc1 and Rsc2 are components of the RSC complex (remodeling the structure of chromatin), are essential for transcriptional control, and have a specific domain architecture including two bromodomains. The RSC complex has also been linked to homologous recombination and nonhomologous end-joining repair of DNA double strand breaks. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.84 E-value=7.8e-21 Score=172.25 Aligned_cols=96 Identities=32% Similarity=0.438 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 006060 371 IFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc 444 (662)
+.+.|..|++.|+..++ +.+|..+++... +||||++|++||||+||++||.+ |.++.+|..||+|||+||
T Consensus 2 l~~~~~~l~~~i~~~~~~~g~~~~~~F~~lp~~~~--~pdYy~iI~~PmdL~tI~~kl~~--Y~s~~ef~~D~~li~~Na 77 (106)
T cd05521 2 LSKKLKPLYDGIYTLKEENGIEIHPIFNVLPLRKD--YPDYYKIIKNPLSLNTVKKRLPH--YTNAQEFVNDLAQIPWNA 77 (106)
T ss_pred HHHHHHHHHHHHHhhcCcCCCCchHhhhcCCcccc--CccHHHHhcCCCCHHHHHHHHHc--CCCHHHHHHHHHHHHHHH
Confidence 45778999999988765 468998887766 99999999999999999999998 999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHH
Q 006060 445 MTYNPKGQDVHIMAEQLLKIFEDKWV 470 (662)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~~~ 470 (662)
+.||+++|.+|.+|..|+++|..++.
T Consensus 78 ~~yN~~~s~i~~~A~~le~~~~~~~~ 103 (106)
T cd05521 78 RLYNTKGSVIYKYALILEKYINDVII 103 (106)
T ss_pred HHHcCCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999998653
No 36
>cd05492 Bromo_ZMYND11 Bromodomain; ZMYND11_like sub-family. ZMYND11 or BS69 is a ubiquitously expressed nuclear protein that has been shown to associate with chromatin. It interacts with chromatin remodeling factors and might play a role in chromatin remodeling and gene expression. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=99.82 E-value=4.5e-20 Score=168.13 Aligned_cols=98 Identities=17% Similarity=0.172 Sum_probs=86.3
Q ss_pred HHHHHHHHHc-CCCCCCCCCcCCc---cccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 006060 375 CSALLEKLMK-HKHGWVFNAPVDV---KNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (662)
Q Consensus 375 C~~IL~~L~k-~k~a~pF~ePVD~---~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~ 450 (662)
+..++.++.. .+.++||..||.+ ...++|+|+++|++||||+||++||++|.|+++.||..||+|||+||+.||++
T Consensus 5 L~f~~~~~k~~lp~~~~~~~~v~~~~~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~LI~~N~~~yNg~ 84 (109)
T cd05492 5 LKFIVSRMKSWLPPDTTNRAIVLNKRGKATKLPKRRRLIHTHLDVADIQEKINSEKYTSLEEFKADALLLLHNTAIFHGA 84 (109)
T ss_pred HHHHHHHHHhcCcccccccccccccCchhccCCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 3456666666 5667999999974 33459999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q 006060 451 GQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 451 gS~V~~~A~~Lek~FE~~~~~i 472 (662)
+|.++.+|..|.+.....+.+|
T Consensus 85 ~s~~~~~A~~l~~d~~~el~Ei 106 (109)
T cd05492 85 DSEQYDAARWLYRDTCHDLREL 106 (109)
T ss_pred CCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888777665
No 37
>KOG1245 consensus Chromatin remodeling complex WSTF-ISWI, large subunit (contains heterochromatin localization, PHD and BROMO domains) [Chromatin structure and dynamics]
Probab=99.71 E-value=7.5e-18 Score=204.84 Aligned_cols=95 Identities=39% Similarity=0.785 Sum_probs=92.5
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHH
Q 006060 375 CSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDV 454 (662)
Q Consensus 375 C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V 454 (662)
|..||..|+.|+.||||++||++.. +||||+|||+||||+||+.||..|.|.++.+|..||+|||+||.+||.. |.+
T Consensus 1306 ~e~il~e~~~~~~awPFlepVn~~~--vp~Y~~IIk~Pmdl~tir~k~~~~~Y~~~eef~~Di~lvf~Nc~~yN~~-s~i 1382 (1404)
T KOG1245|consen 1306 CEDILHELVVHKAAWPFLEPVNPKE--VPDYYDIIKKPMDLSTIREKLSKGIYPSPEEFATDIELVFDNCETYNED-SEI 1382 (1404)
T ss_pred HHHHHHHHHHhhhcchhhccCChhh--cccHHHHhcChhHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHhccc-hhh
Confidence 8999999999999999999999998 9999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006060 455 HIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 455 ~~~A~~Lek~FE~~~~~i 472 (662)
++.+..|.++|..+|...
T Consensus 1383 ~~ag~~l~~ff~~~~~~~ 1400 (1404)
T KOG1245|consen 1383 GRAGTCLRRFFHKRWRKK 1400 (1404)
T ss_pred hhhcchHHHHHHHHHHhh
Confidence 999999999999988653
No 38
>cd05526 Bromo_polybromo_VI Bromodomain, polybromo repeat VI. Polybromo is a nuclear protein of unknown function, which contains 6 bromodomains. The human ortholog BAF180 is part of a SWI/SNF chromatin-remodeling complex, and it may carry out the functions of Yeast Rsc-1 and Rsc-2. It was shown that polybromo bromodomains bind to histone H3 at specific acetyl-lysine positions. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine, but not all the bromodomains in polybromo may bind to acetyl-lysine.
Probab=99.68 E-value=1.6e-16 Score=145.04 Aligned_cols=98 Identities=16% Similarity=0.196 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhh
Q 006060 371 IFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNA 444 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc 444 (662)
+.+.+..|+..++.|.+ +.+|.+.+. . .|+||.+|+.||||.+|++||..|.|.++++|..||.|||.||
T Consensus 4 vq~~l~~l~~~V~~~~D~~Gr~~s~~f~~LP~--~--~~~~~~~ik~Pi~l~~Ik~ki~~~~Y~~ld~~~~D~~lmf~NA 79 (110)
T cd05526 4 VQELLATLFVSVMNHQDEEGRCYSDSLAELPE--L--AVDGVGPKKIPLTLDIIKRNVDKGRYRRLDKFQEDMFEVLERA 79 (110)
T ss_pred HHHHHHHHHHHHHhccCCCCCCchHHHHHCCC--c--ccCchhhhcCCccHHHHHHHHHcCCcCcHHHHHHHHHHHHHHH
Confidence 56677889999999875 778888666 2 5788999999999999999999999999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
+.||.+||.+|.+|..|+++|.....++
T Consensus 80 r~yN~~~S~iy~dA~eLq~~f~~~rd~~ 107 (110)
T cd05526 80 RRLSRTDSEIYEDAVELQQFFIKIRDEL 107 (110)
T ss_pred HHhCcccCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999876654
No 39
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=99.67 E-value=9.5e-17 Score=173.42 Aligned_cols=106 Identities=29% Similarity=0.385 Sum_probs=90.6
Q ss_pred hHHHHHHHHHHHHHHcC---CCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 006060 369 SKIFKSCSALLEKLMKH---KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~---k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~ 445 (662)
.+....+...+.++... ..+++|..+|+... +|+||.||+.||||++|+++|..+.|.++.+|..||.|||.||+
T Consensus 144 ~~~~~~i~~~~~~~~~~~~~~~s~~F~~~p~k~~--~PdYy~iIk~Pm~L~~i~kkl~~~~Y~s~eef~~D~~lM~~N~~ 221 (371)
T COG5076 144 YADNKAIAKFKKQLFLRDGRFLSSIFLGLPSKRE--YPDYYEIIKSPMDLLTIQKKLKNGRYKSFEEFVSDLNLMFDNCK 221 (371)
T ss_pred HHHHHHHHHHHHHhhcccccccccccccCCcccc--CCChheeecchhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Confidence 33444444444444433 34899999998877 99999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 446 TYNPKGQDVHIMAEQLLKIFEDKWVVIESEY 476 (662)
Q Consensus 446 ~YN~~gS~V~~~A~~Lek~FE~~~~~i~~~~ 476 (662)
+||.++|.||.+|..|++.|...+..++...
T Consensus 222 ~yN~~~s~v~~~a~~l~~~~~~~i~~~~~~~ 252 (371)
T COG5076 222 LYNGPDSSVYVDAKELEKYFLKLIEEIPEEM 252 (371)
T ss_pred hccCCCcchhhhhHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999998776543
No 40
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=99.45 E-value=5.3e-14 Score=160.79 Aligned_cols=102 Identities=34% Similarity=0.571 Sum_probs=96.2
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
..+....+.+|.+|..|.++|||.+||+..+ +||||.+|++||||.||+.+|..+.|.....|+.|+.+||.||+.||
T Consensus 605 ~~~~s~~~~il~~l~~h~~awPf~~Pv~~~e--~pdyy~~I~~pmDl~tM~~~l~~~~y~~~~~f~ad~~~vf~ncr~yn 682 (720)
T KOG1472|consen 605 GKLFSAIQNILDQLQNHGDAWPFLKPVNKKE--VPDYYDVIKHPMDLRTMQNRLKDNQYTEVELFMADVVRVFANCRMYN 682 (720)
T ss_pred chhhHHHHhHHhhhhcCCccCCccCcccccc--CCcHHHHhcccccHHHHhhhccccchhhHHHHHHHHHHHHhhhhccC
Confidence 3466678899999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 449 PKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 449 ~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
+.++..|++|..|..+|..++...
T Consensus 683 ~~~~~y~k~~~~le~~~~~k~~~~ 706 (720)
T KOG1472|consen 683 GSDTQYYKCAQALEKFFLFKLNEL 706 (720)
T ss_pred Cccchheecccchhhhhcchhhhh
Confidence 999999999999999998877654
No 41
>cd05494 Bromodomain_1 Bromodomain; uncharacterized subfamily. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=99.39 E-value=1.7e-13 Score=126.03 Aligned_cols=81 Identities=19% Similarity=0.261 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcC-------CCCCHHHHHHHHHHHHH
Q 006060 370 KIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKN-------WYKSPKEFAEDVRLTFH 442 (662)
Q Consensus 370 ~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g-------~Y~s~~EF~~DVrLIF~ 442 (662)
+.+..|..+|++++.++.+|||..|||+...++||||++||+||||+||+++|.++ .|..-..+.+++..++.
T Consensus 3 e~~~~~l~~l~~~~~~~~~~pF~~PVd~~~~~~pdY~~iIK~PMDL~ti~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (114)
T cd05494 3 EALERVLRELKRHRRNEDAWPFLEPVNPPRRGAPDYRDVIKRPMSFGTKVNNIVETGARDLEDLQIVQEDPADKQIDDEG 82 (114)
T ss_pred HHHHHHHHHHHHhhhCCCCCCcCCCCCchhcCCCChhhhcCCCCChHHHHHHHHcccccccccccccccccccccccccc
Confidence 46778889999999999999999999997777999999999999999999999986 44545566777777788
Q ss_pred hhhhhCCC
Q 006060 443 NAMTYNPK 450 (662)
Q Consensus 443 Nc~~YN~~ 450 (662)
||..||..
T Consensus 83 ~~~~~~~~ 90 (114)
T cd05494 83 RRSPSNIY 90 (114)
T ss_pred ccCccccc
Confidence 87777654
No 42
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=99.20 E-value=8.3e-12 Score=148.16 Aligned_cols=108 Identities=30% Similarity=0.389 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
+....+.|+.+|++|...+....|..|||+.+ +|||.++|++||||.||+.+++++.|.++++|.+|+.||..||+.|
T Consensus 563 l~p~~kLl~~~l~~lq~kD~~gif~~pvd~~e--~pdy~~iik~pmd~~t~~~kl~s~~y~tle~ieed~~l~~~nc~~y 640 (1051)
T KOG0955|consen 563 LNPFKKLLQKSLDKLQKKDSYGIFAEPVDPSE--LPDYIDIIKKPMDFFTMRLKLESGAYSTLEPIEEDVNLIVSNCMEY 640 (1051)
T ss_pred CchHHHHHHHHHHHhhcccccCceeeccChhh--cccHHHHhcCccchhhhhhhccccchhhhhHHHHhHhHhHhHHHHh
Confidence 55778889999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEYN 477 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i~~~~~ 477 (662)
|..+..+|..|..|++.....+.....+..
T Consensus 641 n~~dtv~~r~av~~~e~~~~~~~~arke~e 670 (1051)
T KOG0955|consen 641 NAKDTVYYRAAVRLRELIKKDFRNARKEPE 670 (1051)
T ss_pred hccCeehHhhhHHHHhhhhhHHHhcccchh
Confidence 999999999999999998887776654433
No 43
>cd05491 Bromo_TBP7_like Bromodomain; TBP7_like subfamily, limited to fungi. TBP7, or TAT-binding protein homolog 7, is a yeast protein of unknown function that contains AAA-superfamily ATP-ase domains and a bromodomain. Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=98.94 E-value=6.5e-10 Score=102.75 Aligned_cols=41 Identities=32% Similarity=0.582 Sum_probs=39.2
Q ss_pred CCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q 006060 411 HPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKG 451 (662)
Q Consensus 411 ~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~g 451 (662)
.||||+||++||.+|.|.++.+|++||+|||.||+.||.++
T Consensus 63 y~MDL~tIe~RL~ng~Y~tp~~F~~DiklI~~Nc~~ynd~d 103 (119)
T cd05491 63 YNMDLDTIEERLWNGYYATPKDFLKDIKRIVRDAKTIGDRE 103 (119)
T ss_pred eccCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhCCHH
Confidence 58999999999999999999999999999999999999873
No 44
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.85 E-value=2.5e-09 Score=127.38 Aligned_cols=94 Identities=26% Similarity=0.482 Sum_probs=82.4
Q ss_pred HHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHH
Q 006060 375 CSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDV 454 (662)
Q Consensus 375 C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V 454 (662)
.-.|+.+++.-+.+|+|.+||+.+. +|+||.+|++||||.+|.+++..+.|.+.+||.+||++|+.||..||+..+.+
T Consensus 1387 ~d~~vs~~~~ipes~~f~~~v~~k~--~~~yy~kik~pmdl~~i~~n~~~~~y~s~~e~l~dv~~i~~n~~~~ng~e~~y 1464 (1563)
T KOG0008|consen 1387 LDNIVSQMKEIPESWPFHEPVNKKR--VPDYYKKIKNPMDLETILKNIPPHKYDSRSEFLDDVNLIYVNSVEYNGAESAY 1464 (1563)
T ss_pred hhhHHHHHHhcchhcccccccchhh--chHHHHHhcChhhHHHHhhcCCccccccHHHHhhhhHhhcccceeecCccccc
Confidence 3456677777788999999999998 99999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHH
Q 006060 455 HIMAEQLLKIFEDKWV 470 (662)
Q Consensus 455 ~~~A~~Lek~FE~~~~ 470 (662)
..-|+.+-.+....+.
T Consensus 1465 ~~k~~k~~ev~~~~~~ 1480 (1563)
T KOG0008|consen 1465 TKKARKIGEVGLANLL 1480 (1563)
T ss_pred cHHHHHHHHHHHHHHH
Confidence 7777766655554443
No 45
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.71 E-value=2.5e-08 Score=113.46 Aligned_cols=100 Identities=23% Similarity=0.284 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 006060 369 SKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFH 442 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~ 442 (662)
.....++..||..|..+.+ ...|.+..+... .|+||.+|..||.|..|++|+..+.|.+.+.|..|+.|||.
T Consensus 51 ~~~~~~f~~il~~~~~~~d~~gk~~~d~feklp~~~~--~p~yy~~i~~pisl~~ik~kv~k~~y~~~~~f~~D~~lm~e 128 (629)
T KOG1827|consen 51 PPLIPKFKTILASLLDLKDDEGKQLFDKFEKLPSRKE--FPEYYYVIQQPISLDQIKRKVKKGRYKRLSFFQLDFLLMTE 128 (629)
T ss_pred hHHHHHHHHHHHHHHhhccccCcccchhHhhcccccc--CCCcceeecCcccHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 3455667777777777654 567888888887 99999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHH
Q 006060 443 NAMTYNPKGQDVHIMAEQLLKIFEDKWV 470 (662)
Q Consensus 443 Nc~~YN~~gS~V~~~A~~Lek~FE~~~~ 470 (662)
||..||.+++.+|+++..|+..|.....
T Consensus 129 na~~~n~~ds~~~~~s~~l~~~~~~~~~ 156 (629)
T KOG1827|consen 129 NARLYNRPDSLIYKDSGELEKYFISLED 156 (629)
T ss_pred HHHHhcCcchhhhhhhhhhhcchhhhhc
Confidence 9999999999999999999999987543
No 46
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.67 E-value=2.5e-08 Score=116.92 Aligned_cols=100 Identities=31% Similarity=0.428 Sum_probs=91.0
Q ss_pred HHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 006060 373 KSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (662)
Q Consensus 373 k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~ 446 (662)
+.|..|+....++.+ +..|........ +||||.||++||++..|+++|.++.|.+..+...||.++|.||+.
T Consensus 1027 ~~~~~i~~~~~~~~~~~~r~~~~~~~~~~s~k~--~~d~~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~na~~ 1104 (1157)
T KOG0386|consen 1027 KQALKIASTSIKYKDSAGRELSEVFLKLPSRKE--YPDYYEIIKKPVAIDKIKKRIENHKYNSLKELEKDFMLLFNNART 1104 (1157)
T ss_pred HHHHHHHHHHHhcccccccccchhcccCccccc--ccchHHHhcchhhHHHHhhhccccccchHHHHHHHHHhhcchhhh
Confidence 668888887776654 678998877777 999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006060 447 YNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (662)
Q Consensus 447 YN~~gS~V~~~A~~Lek~FE~~~~~i~~ 474 (662)
||..||.||..|..|+.+|......+..
T Consensus 1105 ~~~egs~~y~d~~~l~~~~~~~~~~~~~ 1132 (1157)
T KOG0386|consen 1105 YNEEGSRVYEDAIVLQSVFKSARQEISK 1132 (1157)
T ss_pred hccCCceechhHHHHHHHHhhhHHHHhc
Confidence 9999999999999999999988777654
No 47
>KOG1474 consensus Transcription initiation factor TFIID, subunit BDF1 and related bromodomain proteins [Transcription]
Probab=98.67 E-value=4e-09 Score=121.95 Aligned_cols=91 Identities=38% Similarity=0.673 Sum_probs=85.2
Q ss_pred HHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHH
Q 006060 381 KLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQ 460 (662)
Q Consensus 381 ~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~~A~~ 460 (662)
.+.+|.++|+|..||+.+.+++|+||.+|++|||++||+.+|++..|.+..+..+|+.-+|.||+.||.++.+|+.++..
T Consensus 3 ~~~~~~~~~~f~~~v~~v~l~~~~~~~~~~~~~d~~~~~~~~e~n~~~~~~~~~~~f~~~~sn~~~~~~~~~~v~~~~~~ 82 (640)
T KOG1474|consen 3 EARKHKLAWPFLEPVDAVALNLPAYYEIIKRPMDIGTIEKRVENNYYFSASECIADFKTKFSNCYLFNDSGDDVVRMKQS 82 (640)
T ss_pred ccccccccccccCccchhhccchhhhcccCCCCCchhhhhhhccCccccHhhhhhhccccccchhcccCCccchhhcccc
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q 006060 461 LLKIFEDKWVV 471 (662)
Q Consensus 461 Lek~FE~~~~~ 471 (662)
++..|.+....
T Consensus 83 ~~~~~~~~~~~ 93 (640)
T KOG1474|consen 83 LEKLFPKKLRS 93 (640)
T ss_pred chhhccccccc
Confidence 99998655443
No 48
>KOG1472 consensus Histone acetyltransferase SAGA/ADA, catalytic subunit PCAF/GCN5 and related proteins [Chromatin structure and dynamics; Transcription]
Probab=98.64 E-value=2.6e-08 Score=114.80 Aligned_cols=76 Identities=28% Similarity=0.521 Sum_probs=68.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
+.+...|. .+.++|+|.++|+... .|+||.||+.||||+++.+|+..+.|.+..+|+.|+.+||.||..||
T Consensus 292 ~~~~~~~~-------~~~~s~~~~~kvs~~~--a~~y~~i~k~pmdl~t~~~k~~~~~y~~~~~fv~d~~~~~~n~~~~n 362 (720)
T KOG1472|consen 292 EELYEAAE-------RTEHSTPFLEKVSKED--APNYYQIIKAPMDLSTELKKLKSGPYCSKEEFVNDLMLIWRNCEKYN 362 (720)
T ss_pred HHHHHHhc-------ccccccccccCCChhh--CcchHHhhhcchHHHHHHHHhccccccchhHHHHHHHHHHhcchhhc
Confidence 44555555 4899999999999998 99999999999999999999999999999999999999999999999
Q ss_pred CCCCH
Q 006060 449 PKGQD 453 (662)
Q Consensus 449 ~~gS~ 453 (662)
...+.
T Consensus 363 ~ee~~ 367 (720)
T KOG1472|consen 363 SEESH 367 (720)
T ss_pred cccch
Confidence 87543
No 49
>KOG0008 consensus Transcription initiation factor TFIID, subunit TAF1 [Transcription]
Probab=98.63 E-value=6e-08 Score=116.03 Aligned_cols=104 Identities=24% Similarity=0.392 Sum_probs=95.0
Q ss_pred HHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCC
Q 006060 372 FKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKG 451 (662)
Q Consensus 372 ~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~g 451 (662)
.-.+..|+.++...++..+|..||+... ++|||.||+.||||.++++.+..+.|.+-++|..|+.|||+|..+||++-
T Consensus 1263 ss~l~~i~n~~~~~~~t~~f~~Pv~~k~--v~dyy~vi~~P~~lq~~kk~v~kr~y~~r~~fle~~~~~~~ns~~yng~~ 1340 (1563)
T KOG0008|consen 1263 SSILETIINQARSSPNTYPFPTPVNAKE--VKDYYRVITPPMDLQTQKKLVRKRLYESREHFLEELPLIVSNSTKYNGPL 1340 (1563)
T ss_pred ccchHHHHHHHhcCCCCcCCCCccchhh--ccchhhccCCCcchHHHHHHHHHHHHHHHHHHHHHhHHHhhchhhhcCch
Confidence 3446789999999999999999999998 99999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 452 QDVHIMAEQLLKIFEDKWVVIESEYN 477 (662)
Q Consensus 452 S~V~~~A~~Lek~FE~~~~~i~~~~~ 477 (662)
+.+...+..+...+-..|..-+..+-
T Consensus 1341 ~~~t~~~q~mls~~~~~~~ekedk~~ 1366 (1563)
T KOG0008|consen 1341 ASLTRQQQSMLSLCFEKLKEKEDKLW 1366 (1563)
T ss_pred HHHHHHHHHHHHHHHHhhchhHHHHH
Confidence 99999999988888887876655543
No 50
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=98.06 E-value=6.9e-07 Score=96.31 Aligned_cols=94 Identities=23% Similarity=0.247 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCC
Q 006060 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQ 452 (662)
Q Consensus 373 k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS 452 (662)
.....++.+|.+...-..|.-||.... .|+|.+||+.|||+.|++.|++.+.|.++.+|..|.+||..|+..||...+
T Consensus 22 ~~~ehhlrkl~sKdp~q~fafplt~~m--ap~y~~iis~Pmd~~t~r~kidd~~yl~L~~m~~d~kl~~~na~~yn~~~T 99 (418)
T KOG1828|consen 22 GDAEHHLRKLPSKDPKQKFAFPLTDKM--APNYLEIISEPMDRITKRSKIDDTRYLVLSQMEFDRKLPDGNATLYNLHPT 99 (418)
T ss_pred hhHHHHHHhccccChhhhhccccchhh--ccchHhhhhcccccccccccCCCccceechhhhhhhcccccchhhhhcCCc
Confidence 334566777777766677888888877 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 006060 453 DVHIMAEQLLKIFEDK 468 (662)
Q Consensus 453 ~V~~~A~~Lek~FE~~ 468 (662)
.++..|+.|..+-...
T Consensus 100 v~~~aaKrL~~v~~~~ 115 (418)
T KOG1828|consen 100 VPIVAAKRLCPVRLGM 115 (418)
T ss_pred cccccccccchhhcch
Confidence 9999999987664443
No 51
>KOG1828 consensus IRF-2-binding protein CELTIX-1, contains BROMO domain [Transcription]
Probab=97.74 E-value=1.8e-05 Score=85.60 Aligned_cols=83 Identities=20% Similarity=0.142 Sum_probs=74.5
Q ss_pred HHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHH
Q 006060 378 LLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIM 457 (662)
Q Consensus 378 IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~~ 457 (662)
..++|........|..|+-... +|.|.-+|++|||++|++.|..++.|.| .+|..|+.||+-||++||.+...+|.+
T Consensus 216 q~~kl~~~~p~~~lnyg~tas~--aP~YSm~Ik~~~~~~Tygdk~~andy~S-~~f~~D~kl~~l~amT~gehsk~yyel 292 (418)
T KOG1828|consen 216 QEDKLNRVDPVAYLNYGPTASF--APGYSMTITEVEPPGTYGDKSSANDYES-LSFTQDRKLIALKAVTNGEHSKSYYEL 292 (418)
T ss_pred HHHHhcccCchhhhcccchhhh--cccccccccccCCCcchhhhhhhhhhhh-hhhhcccchhhHHHHhcCCcchHHHHH
Confidence 4456666666788888887776 8999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHH
Q 006060 458 AEQLLK 463 (662)
Q Consensus 458 A~~Lek 463 (662)
|..+.-
T Consensus 293 ank~lh 298 (418)
T KOG1828|consen 293 ANKQLH 298 (418)
T ss_pred HHhhhh
Confidence 988765
No 52
>COG5076 Transcription factor involved in chromatin remodeling, contains bromodomain [Chromatin structure and dynamics / Transcription]
Probab=96.90 E-value=0.00027 Score=77.19 Aligned_cols=93 Identities=31% Similarity=0.513 Sum_probs=83.0
Q ss_pred HHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHH
Q 006060 377 ALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHI 456 (662)
Q Consensus 377 ~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~ 456 (662)
.++.....+-.+|+|..++.... .|+|+++|..+|++.|.+.+|..+.|....+|..|..++|+||..||+....++.
T Consensus 270 ~~i~~~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (371)
T COG5076 270 VLITNSQAHVGAWPFLRPVSDEE--VPDYYKDIRDPMDLSTKELKLRNNYYRPEETFVRDAKLFFDNCVMYNGEVTDYYK 347 (371)
T ss_pred hcccccccccccccccccCCccc--ccchhhhhhcccccccchhhhhcccCCCccccccccchhhhcccccchhhhhhhh
Confidence 34444466778999999999888 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 006060 457 MAEQLLKIFEDKWVV 471 (662)
Q Consensus 457 ~A~~Lek~FE~~~~~ 471 (662)
.+..+..+|......
T Consensus 348 ~~~~~~~~~~~~~~~ 362 (371)
T COG5076 348 NANVLEDFVIKKTRL 362 (371)
T ss_pred hccchhhhHhhhhhh
Confidence 999998888765543
No 53
>cd05493 Bromo_ALL-1 Bromodomain, ALL-1 like proteins. ALL-1 is a vertebrate homologue of Drosophila trithorax and is often affected in chromosomal rearrangements that are linked to acute leukemias, such as acute lymphocytic leukemia (ALL). Bromodomains are found in many chromatin-associated proteins and in nuclear histone acetyltransferases. They interact specifically with acetylated lysine.
Probab=95.33 E-value=0.024 Score=53.98 Aligned_cols=64 Identities=17% Similarity=0.275 Sum_probs=50.4
Q ss_pred CCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 412 PMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (662)
Q Consensus 412 PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~~ 475 (662)
|.||.-|++||+.|.|.++.+|.+||-.|+.-++.=.+-...+-+.-..+..+|-+.+..+-..
T Consensus 59 p~dL~~V~kkl~~G~Y~sv~~F~~DvvkIiqa~l~~e~~~pe~~ka~s~~Ksf~ik~me~vf~W 122 (131)
T cd05493 59 PLDLEAVGKKLEAGFYTSVLDFSDDIVKIIQAALNSEGGQPEIKKANSMAKSFFIKLMESVFPW 122 (131)
T ss_pred cccHHHHHHHHhccceehHHHHHHHHHHHHHHHHhhccCCccccCcchHHHHHHHHHHHHhccc
Confidence 8899999999999999999999999999999888765555555555556666676666555433
No 54
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=89.24 E-value=0.27 Score=58.51 Aligned_cols=60 Identities=27% Similarity=0.496 Sum_probs=51.9
Q ss_pred cCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHH
Q 006060 409 IRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDK 468 (662)
Q Consensus 409 IK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~~A~~Lek~FE~~ 468 (662)
-.-|..|..|+.+|++..|++.+.|..||..|.+||.+|.+.+.-+...+..|...|..-
T Consensus 1050 fpvpls~evi~~rlEn~yYrs~e~~~hdvs~mlsnae~~fg~~~~~~~ki~~l~~~~~~T 1109 (1113)
T KOG0644|consen 1050 FPVPLSLEVIRSRLENNYYRSQEALRHDVSVMLSNAETFFGRNKNVAIKISFLSPWFDRT 1109 (1113)
T ss_pred CCCcccHHHHHHHHHhhhhhhhHhhhcchhhhhcccceeecccccHHHHhhhcchhhhhh
Confidence 455899999999999999999999999999999999999998887777777777666543
No 55
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=84.66 E-value=0.48 Score=58.28 Aligned_cols=65 Identities=15% Similarity=0.237 Sum_probs=57.1
Q ss_pred CCCCCCCcCCcccc---CCCccccccCCCCChHHHHHHHhcCCCCCHHHHHH--HHHHHHHhhhhhCCCC
Q 006060 387 HGWVFNAPVDVKNL---GLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAE--DVRLTFHNAMTYNPKG 451 (662)
Q Consensus 387 ~a~pF~ePVD~~~l---~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~--DVrLIF~Nc~~YN~~g 451 (662)
.+..|..|++.... .+++|..+|+.+||+...-.++..+.|.++.+|.. +++|||.+++.||+..
T Consensus 532 ~~~~~s~Pl~~~~~~ll~~~~~~~~iq~~~~va~~~~k~~e~~~~~v~~~e~~~~i~lic~~~lli~~~~ 601 (1080)
T KOG0732|consen 532 SSVIFSRPLSTYLKPLLPFQDALEDIQGLMDVASSMAKIEEHLKLLVRSFESNFAIRLICRPRLLINGGK 601 (1080)
T ss_pred cccCCCCCCCcceecccchHHHHHHhhcchhHHhhhhhHHHHhHHHHHhhhcccchhhhcCcHHhcCCCc
Confidence 36778888875432 25699999999999999999999999999999999 9999999999999875
No 56
>KOG1827 consensus Chromatin remodeling complex RSC, subunit RSC1/Polybromo and related proteins [Chromatin structure and dynamics; Transcription]
Probab=57.04 E-value=1.6 Score=51.17 Aligned_cols=75 Identities=9% Similarity=-0.089 Sum_probs=66.5
Q ss_pred CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHH
Q 006060 388 GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKI 464 (662)
Q Consensus 388 a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~~A~~Lek~ 464 (662)
...|+.-++.+. +|+||.+++-||-++.+.+++..++|.....|..|+-++|.|+..|+....-++..+..|...
T Consensus 213 Ier~w~~~dg~k--~~~~~w~~rP~~T~H~a~r~F~k~Evfkt~~~~~~~~q~l~g~c~v~~~~~yi~~~p~~ls~~ 287 (629)
T KOG1827|consen 213 IERLWKLPDGEK--WPQGCWIYRPEETVHRADRKFYKQEVFKTSLYRDDLVQRLLGKCYVMKPTEYISGDPENLSEE 287 (629)
T ss_pred ecccccCccccc--ccceeEeeCCccCccccccchhcccceecccccccHHHHhhcceEEeehhHhhhcCccccccc
Confidence 345666666665 899999999999999999999999999999999999999999999999988888888877654
No 57
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=47.15 E-value=8.7 Score=46.56 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=52.0
Q ss_pred CcCCccccCCCccccccCCCCChHHHHHHHhcCCC--------------C----------CHHH------HHHHHHHHHH
Q 006060 393 APVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWY--------------K----------SPKE------FAEDVRLTFH 442 (662)
Q Consensus 393 ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y--------------~----------s~~E------F~~DVrLIF~ 442 (662)
-++|... .|.|..+...|-+|+|++..|.+..| . ++.+ ...-+.+|-.
T Consensus 88 ~~~d~~~--pp~~~~~a~vpTlLgtg~qsLl~r~k~~~~~~~~~s~~~~~h~~~~~~~~~sl~s~~~~~~~h~~a~~i~~ 165 (1113)
T KOG0644|consen 88 PMLDKPI--PPRYCTIARVPTLLGTGRQSLLRRAKDIRHTVWKGSAFRWPHMHADQVRGVSLRSIGGGFEIHHRAPSIGC 165 (1113)
T ss_pred cCcCCCC--CcceeeeecccchhcchhHHHHhhhhhcccccccccccccccccCcccccceeccCCcchhhhhcCccccc
Confidence 3566555 78899999999999999999998877 2 3333 6667888999
Q ss_pred hhhhhCCCCCHHHHHHHHHHH
Q 006060 443 NAMTYNPKGQDVHIMAEQLLK 463 (662)
Q Consensus 443 Nc~~YN~~gS~V~~~A~~Lek 463 (662)
||+.++.|++ +++-++.+.+
T Consensus 166 at~~~akPgt-mvqkmk~ikr 185 (1113)
T KOG0644|consen 166 ATFSIAKPGT-MVQKMKNIKR 185 (1113)
T ss_pred ceeeecCcHH-HHHHHHHHHH
Confidence 9999999999 4444444433
No 58
>PF14372 DUF4413: Domain of unknown function (DUF4413)
Probab=46.82 E-value=74 Score=28.76 Aligned_cols=51 Identities=14% Similarity=0.236 Sum_probs=43.7
Q ss_pred cCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006060 424 KNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (662)
Q Consensus 424 ~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~ 474 (662)
...|.|..-|...|..|-.....++..+..+..||..+...|++.|..+..
T Consensus 3 ~~~~pTsn~~f~~i~~i~~~l~~~~~~d~~l~~ma~~M~~KfdKYw~~~~~ 53 (101)
T PF14372_consen 3 GSSYPTSNLYFHEIWKIKDLLRDWNNDDPDLKNMAKKMKEKFDKYWKDCNL 53 (101)
T ss_pred CCCcCcHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhHH
Confidence 346889999999888888888888877889999999999999999986543
No 59
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=37.00 E-value=33 Score=40.02 Aligned_cols=20 Identities=40% Similarity=0.606 Sum_probs=10.3
Q ss_pred ccCCC---CChHHHHHHHhcCCC
Q 006060 408 IIRHP---MDLGTVKTRLNKNWY 427 (662)
Q Consensus 408 IIK~P---MDLsTIkkKL~~g~Y 427 (662)
|||.| +||..=++-|-+-.|
T Consensus 437 IIKDPYKLLd~EKKkKlLgsYkY 459 (574)
T PF07462_consen 437 IIKDPYKLLDLEKKKKLLGSYKY 459 (574)
T ss_pred eecChHhhhCHHHHHHHhhhHHH
Confidence 68888 455543333333334
No 60
>TIGR02606 antidote_CC2985 putative addiction module antidote protein, CC2985 family. This bacterial protein family has a very similar seed alignment to that of Pfam model pfam03693 but is a more stringent model with higher cutoff scores. Proteins that score above the trusted cutoff to this model almost invariably are found adjacent to a ParE family protein (pfam05016), where ParE is the killing partner of an addiction module for plasmid stabilization. Members of this family, therefore, are putative addiction module antidote proteins. Some are encoded on plasmids or in prophage regions, but others appear chromosomal. A genome may contain several identical copies, such as the four in Magnetococcus sp. MC-1. This family is named for one member, CC2985 of Caulobacter crescentus CB15.
Probab=33.57 E-value=57 Score=27.79 Aligned_cols=27 Identities=11% Similarity=0.229 Sum_probs=22.8
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 006060 416 GTVKTRLNKNWYKSPKEFAEDVRLTFH 442 (662)
Q Consensus 416 sTIkkKL~~g~Y~s~~EF~~DVrLIF~ 442 (662)
..|+..+..|.|.+.+|+++|.-.++.
T Consensus 12 ~~i~~~V~sG~Y~s~SEVir~aLR~le 38 (69)
T TIGR02606 12 SFIRSQVQSGRYGSASEVVRAALRLLE 38 (69)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 358999999999999999998876554
No 61
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=24.25 E-value=1.8e+02 Score=29.37 Aligned_cols=46 Identities=11% Similarity=0.276 Sum_probs=37.5
Q ss_pred cccccCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006060 202 VAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEAK 247 (662)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~l~~rl~~EL~~vr~l~~~ie~~ 247 (662)
+.|...++.|.+.+-.+|.+-|++|.+.+....|+.|.-...|-..
T Consensus 89 l~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~ 134 (185)
T PRK00083 89 LNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRD 134 (185)
T ss_pred CCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444558899999999999999999999999999877666555443
No 62
>PF11116 DUF2624: Protein of unknown function (DUF2624); InterPro: IPR020277 This entry contains proteins with no known function.
Probab=23.58 E-value=62 Score=29.11 Aligned_cols=65 Identities=15% Similarity=0.361 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHhcC-CChhcHHHHHHHHHhhcCCCCCCCC--eEEEECCCC-CHHHHHHHHHHHHH
Q 006060 550 RDMTYDEKQKLSTNLQS-LPSEKLDNIVQIIKKRNSSLFQHDD--EIEVDIDSV-DAETLWELDRFVTN 614 (662)
Q Consensus 550 R~MT~EEK~kLs~~I~~-Lp~EkL~~VVqIIke~~P~l~~~~d--EIEIDIDsL-d~~TLreL~ryV~~ 614 (662)
..||.+|..+++..-+- |+.++...|++||+...-++..+++ .+-..|..+ ++.|..++..++..
T Consensus 13 n~iT~~eLlkyskqy~i~it~~QA~~I~~~lr~k~inIfn~~~r~~llkeia~iT~p~ta~~vn~Lf~q 81 (85)
T PF11116_consen 13 NNITAKELLKYSKQYNISITKKQAEQIANILRGKNINIFNEQERKKLLKEIAKITSPQTAKQVNELFEQ 81 (85)
T ss_pred hcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 36899999999998875 8889999999999987544433211 122233444 55555555555443
No 63
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=23.54 E-value=2e+02 Score=28.93 Aligned_cols=46 Identities=9% Similarity=0.214 Sum_probs=37.7
Q ss_pred cccccCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006060 202 VAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEAK 247 (662)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~l~~rl~~EL~~vr~l~~~ie~~ 247 (662)
+.|...++.|+|.+-.+|.+-|++|.+.++...|..|.-...|-..
T Consensus 80 lnP~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~ 125 (176)
T TIGR00496 80 LNPNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRD 125 (176)
T ss_pred CCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444568899999999999999999999999999877766665444
No 64
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=22.17 E-value=2.2e+02 Score=28.55 Aligned_cols=46 Identities=11% Similarity=0.232 Sum_probs=37.2
Q ss_pred cccccCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006060 202 VAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEAK 247 (662)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~l~~rl~~EL~~vr~l~~~ie~~ 247 (662)
+.|...+..|.|.+-.+|.+-|++|.+.++...|+.|.-...|-..
T Consensus 85 l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~ 130 (179)
T cd00520 85 LNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRD 130 (179)
T ss_pred CCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444557799999999999999999999999999877766555443
No 65
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=20.93 E-value=1.2e+02 Score=26.67 Aligned_cols=26 Identities=12% Similarity=0.235 Sum_probs=20.4
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006060 416 GTVKTRLNKNWYKSPKEFAEDVRLTF 441 (662)
Q Consensus 416 sTIkkKL~~g~Y~s~~EF~~DVrLIF 441 (662)
.-|+.++..|.|.|.+|+++|.-.++
T Consensus 15 ~~i~~~V~sG~Y~s~SEvvR~aLRll 40 (80)
T PF03693_consen 15 AFIEEQVASGRYSSASEVVREALRLL 40 (80)
T ss_dssp HHHHHHHCTTS-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34899999999999999998854444
Done!