Query 006060
Match_columns 662
No_of_seqs 355 out of 1524
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 14:54:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006060.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006060hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ouo_A HUNK1 protein, bromodom 100.0 1.3E-28 4.5E-33 228.3 9.9 107 367-473 19-128 (130)
2 3g0l_A Hwalp4, bromodomain adj 100.0 5.5E-28 1.9E-32 219.7 13.7 104 368-473 11-114 (117)
3 3jvl_A Bromodomain-containing 99.9 1.3E-28 4.6E-33 224.7 8.7 108 367-474 6-116 (120)
4 2oss_A HUNK1 protein, bromodom 99.9 1.5E-27 5.2E-32 220.4 13.6 106 368-473 19-124 (127)
5 3d7c_A General control of amin 99.9 1.3E-27 4.6E-32 215.8 12.2 103 368-472 5-107 (112)
6 2d9e_A Peregrin; four-helix bu 99.9 2.9E-27 1E-31 216.8 14.3 108 368-477 5-112 (121)
7 3mb3_A PH-interacting protein; 99.9 2.5E-27 8.4E-32 220.6 13.2 111 368-480 19-130 (135)
8 3p1f_A CREB-binding protein; s 99.9 3.3E-27 1.1E-31 215.2 13.7 108 368-475 9-117 (119)
9 3nxb_A CAT eye syndrome critic 99.9 1.7E-27 5.7E-32 216.2 10.6 102 368-471 14-115 (116)
10 3q2e_A Bromodomain and WD repe 99.9 3.9E-27 1.3E-31 216.2 13.0 108 369-478 9-117 (123)
11 3fkm_X Signaling protein; brom 99.9 3.9E-27 1.3E-31 227.0 13.0 108 366-473 17-124 (166)
12 4alg_A Bromodomain-containing 99.9 3.4E-27 1.2E-31 224.9 12.3 106 368-473 30-135 (154)
13 2ri7_A Nucleosome-remodeling f 99.9 9.8E-28 3.4E-32 231.0 8.5 142 294-472 30-172 (174)
14 2dat_A Possible global transcr 99.9 5.1E-27 1.8E-31 215.5 12.4 104 368-473 11-120 (123)
15 1e6i_A Transcriptional activat 99.9 3.7E-27 1.3E-31 216.1 11.2 101 371-473 14-114 (121)
16 2grc_A Probable global transcr 99.9 1.3E-26 4.6E-31 214.5 13.3 106 368-475 9-121 (129)
17 2i7k_A Bromodomain-containing 99.9 1.2E-26 4E-31 211.9 12.6 103 368-472 6-108 (117)
18 3rcw_A Bromodomain-containing 99.9 3E-26 1E-30 213.3 14.4 109 368-478 11-119 (135)
19 2yyn_A Transcription intermedi 99.9 2.4E-26 8.4E-31 214.4 13.0 104 367-473 17-122 (135)
20 3iu5_A Protein polybromo-1; PB 99.9 1.7E-26 5.9E-31 209.7 11.6 104 368-473 3-112 (116)
21 3mb4_A Protein polybromo-1; PB 99.9 1.2E-26 4.2E-31 213.1 10.7 104 368-473 13-122 (124)
22 3ljw_A Protein polybromo-1; al 99.9 4E-26 1.4E-30 208.6 12.5 106 368-475 6-117 (120)
23 3mqm_A Probable histone-lysine 99.9 4.9E-26 1.7E-30 209.5 13.0 109 368-478 7-121 (126)
24 3hme_A Bromodomain-containing 99.9 4.7E-26 1.6E-30 209.2 12.4 103 368-472 11-113 (123)
25 3k2j_A Protein polybromo-1; PB 99.9 1.2E-25 4.2E-30 208.6 12.9 105 368-474 15-125 (130)
26 3o36_A Transcription intermedi 99.9 2.7E-25 9.4E-30 216.3 15.5 104 366-472 77-182 (184)
27 3uv4_A Second bromodomain of h 99.9 4.2E-25 1.4E-29 211.4 12.3 109 368-478 23-136 (158)
28 2ro1_A Transcription intermedi 99.9 7.3E-25 2.5E-29 215.1 13.4 102 366-474 72-178 (189)
29 3u5n_A E3 ubiquitin-protein li 99.9 2.1E-24 7.1E-29 214.0 13.8 105 366-473 77-201 (207)
30 3dai_A ATPase family AAA domai 99.9 2.5E-24 8.7E-29 199.4 12.5 107 368-476 8-119 (130)
31 3tlp_A Protein polybromo-1; PB 99.9 3E-24 1E-28 203.1 11.6 102 371-474 25-133 (150)
32 3uv5_A Transcription initiatio 99.9 1.9E-23 6.6E-28 214.3 13.1 109 368-478 12-120 (265)
33 2dkw_A Hypothetical protein KI 99.9 5.2E-23 1.8E-27 191.4 11.5 96 368-470 10-109 (131)
34 3uv5_A Transcription initiatio 99.9 1.2E-22 4E-27 208.5 13.0 106 371-478 137-243 (265)
35 3aad_A Transcription initiatio 99.9 1E-22 3.5E-27 211.8 9.1 107 368-476 45-151 (292)
36 3aad_A Transcription initiatio 99.9 8E-22 2.7E-26 205.1 12.9 102 375-478 174-276 (292)
37 2r0y_A Chromatin structure-rem 99.8 2.5E-21 8.6E-26 203.2 11.0 87 384-472 177-263 (311)
38 2r10_A Chromatin structure-rem 99.8 4E-21 1.4E-25 205.3 11.4 86 385-472 228-313 (361)
39 2r10_A Chromatin structure-rem 99.8 5.6E-20 1.9E-24 196.4 7.6 101 368-472 76-179 (361)
40 2r0y_A Chromatin structure-rem 99.8 1.1E-19 3.9E-24 190.7 7.7 101 368-472 26-129 (311)
41 2jns_A Bromodomain-containing 99.7 6.3E-18 2.2E-22 147.9 4.5 74 546-619 12-86 (90)
42 3iu6_A Protein polybromo-1; PB 99.7 4.7E-16 1.6E-20 147.1 13.5 100 369-474 6-111 (147)
43 3lqh_A Histone-lysine N-methyl 99.6 6.8E-16 2.3E-20 151.1 8.1 95 369-476 74-168 (183)
44 2lm0_A AF4/FMR2 family member 96.0 0.023 7.8E-07 52.1 8.5 64 549-613 56-120 (125)
45 3aei_A Prefoldin beta subunit 20.8 57 0.0019 27.8 2.7 19 229-247 8-26 (99)
46 1wqg_A Ribosome recycling fact 20.0 1.7E+02 0.0057 28.4 6.2 43 201-243 88-130 (185)
47 1ise_A Ribosome recycling fact 20.0 1.7E+02 0.0057 28.4 6.2 43 201-243 88-130 (185)
No 1
>2ouo_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.89A {Homo sapiens} PDB: 2yem_A*
Probab=99.95 E-value=1.3e-28 Score=228.33 Aligned_cols=107 Identities=43% Similarity=0.823 Sum_probs=102.4
Q ss_pred CchHHHHHHHHHHHHHHcCCC---CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 006060 367 TGSKIFKSCSALLEKLMKHKH---GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHN 443 (662)
Q Consensus 367 ~~~~l~k~C~~IL~~L~k~k~---a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~N 443 (662)
.+.++++.|..||..|+.+++ +|+|.+|||+..+++||||+||++||||+||++||++|.|.++.+|.+||+|||.|
T Consensus 19 ~~~~~l~~c~~il~~L~~~~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~N 98 (130)
T 2ouo_A 19 KVSEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLEAREYRDAQEFGADVRLMFSN 98 (130)
T ss_dssp CHHHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCTTSTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhCCcchhHHHhcCCCChhhccCCcHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 367889999999999999886 89999999999888999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 444 AMTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 444 c~~YN~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
|++||+++|.|+.+|..|+++|+.+|+.++
T Consensus 99 a~~yN~~~s~i~~~A~~L~~~f~~~~~~lp 128 (130)
T 2ouo_A 99 CYKYNPPDHEVVAMARKLQDVFEMRFAKMP 128 (130)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 999999999999999999999999998764
No 2
>3g0l_A Hwalp4, bromodomain adjacent to zinc finger domain protei; BAZB2, KIAA1 WALP4, structural genomics consortium, SGC, transcription; 2.03A {Homo sapiens} PDB: 3q2f_A* 2e7o_A
Probab=99.95 E-value=5.5e-28 Score=219.70 Aligned_cols=104 Identities=34% Similarity=0.612 Sum_probs=100.3
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
..+.++.|..||+.|++|+.+|+|.+|||+.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 11 ~~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (117)
T 3g0l_A 11 DSKDLALCSMILTEMETHEDAWPFLLPVNLKL--VPGYKKVIKKPMDFSTIREKLSSGQYPNLETFALDVRLVFDNCETF 88 (117)
T ss_dssp CTTHHHHHHHHHHHHHTSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCchhhcCcCChhh--cCChHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45688999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
|+++|.++.+|..|+++|+++|+.+.
T Consensus 89 N~~~s~~~~~A~~L~~~f~~~~~~~~ 114 (117)
T 3g0l_A 89 NEDDSDIGRAGHNMRKYFEKKWTDTF 114 (117)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999864
No 3
>3jvl_A Bromodomain-containing protein 4; alpha helical, N-acetyl lysine binding domain, signaling protein; 1.20A {Mus musculus} PDB: 3jvm_A 2dww_A 2i8n_A 3oni_A* 2dvv_A* 2e3k_A* 2g4a_A 3s92_A* 2oo1_A* 2e7n_A 2wp1_A*
Probab=99.95 E-value=1.3e-28 Score=224.67 Aligned_cols=108 Identities=43% Similarity=0.815 Sum_probs=103.8
Q ss_pred CchHHHHHHHHHHHHHHcCCC---CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 006060 367 TGSKIFKSCSALLEKLMKHKH---GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHN 443 (662)
Q Consensus 367 ~~~~l~k~C~~IL~~L~k~k~---a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~N 443 (662)
.++++++.|..||..|+++++ +|+|..|||+..+++||||++|++||||+||++||++|.|.++.+|..||+|||.|
T Consensus 6 ~~~~~l~~c~~il~~l~~~~~~~~a~~F~~pvd~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~N 85 (120)
T 3jvl_A 6 KISEQLKCCSGILKEMFAKKHAAYAWPFYKPVDVEALGLHDYCDIIKHPMDMSTIKSKLESREYRDAQEFGADVRLMFSN 85 (120)
T ss_dssp SSCHHHHHHHHHHHHHTSGGGHHHHGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcCccccchhcCCCCchhcCCCCHHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHHHH
Confidence 467899999999999999988 99999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006060 444 AMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (662)
Q Consensus 444 c~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~ 474 (662)
|++||+++|.++.+|..|+++|++.|+.++.
T Consensus 86 a~~yN~~~s~~~~~A~~L~~~f~~~~~~~p~ 116 (120)
T 3jvl_A 86 CYKYNPPDHEVVAMARKLQDVFEMRFAKMPD 116 (120)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHCcC
Confidence 9999999999999999999999999988753
No 4
>2oss_A HUNK1 protein, bromodomain-containing protein 4; BRD4, structural genomics consortium, SGC, signaling protein; 1.35A {Homo sapiens} PDB: 2yel_A* 3mxf_A* 3p5o_A* 3svf_A* 3svg_A* 3u5j_A* 3u5k_A* 3u5l_A* 3uvw_A* 3uvx_A* 3uvy_A* 3uw9_A* 3zyu_A* 4a9l_A* 4e96_A* 3jvj_A 3jvk_A* 3muk_A* 3mul_A* 2nxb_A ...
Probab=99.95 E-value=1.5e-27 Score=220.39 Aligned_cols=106 Identities=38% Similarity=0.670 Sum_probs=100.2
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
..++...|..||+.|++|+.+|+|.+|||+..+++||||+||++||||+||++||++|.|.++.+|.+||+|||+||+.|
T Consensus 19 ~~~l~~~~~~il~~L~~~~~a~~F~~PVd~~~~~~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 98 (127)
T 2oss_A 19 TNQLQYLLRVVLKTLWKHQFAWPFQQPVDAVKLNLPDYYKIIKTPMDMGTIKKRLENNYYWNAQECIQDFNTMFTNCYIY 98 (127)
T ss_dssp CHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCCCChhhccCccHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45677778889999999999999999999986779999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
|+++|.++.+|..|+++|+++|+.++
T Consensus 99 N~~~s~i~~~A~~L~~~f~~~~~~lp 124 (127)
T 2oss_A 99 NKPGDDIVLMAEALEKLFLQKINELP 124 (127)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999998753
No 5
>3d7c_A General control of amino acid synthesis protein 5; GCN5, bromodomain, structural genomics consortium, SGC, HOST-virus interaction, nucleus; 2.06A {Homo sapiens} SCOP: a.29.2.1 PDB: 1f68_A 1jm4_B* 1n72_A 1wug_A* 1wum_A* 1zs5_A* 2rnw_A* 2rnx_A* 3gg3_A
Probab=99.95 E-value=1.3e-27 Score=215.77 Aligned_cols=103 Identities=29% Similarity=0.505 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
..++...|..||+.|++|+.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|.+||+|||.||+.|
T Consensus 5 ~~~l~~~~~~il~~l~~~~~~~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~y 82 (112)
T 3d7c_A 5 PDQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREY 82 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhcCCCCccc--ccCHHHHccCCcCHHHHHHHHcCCCCcCHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
|+++|.++.+|..|++.|++.|+.+
T Consensus 83 N~~~s~~~~~A~~L~~~f~~~~~~~ 107 (112)
T 3d7c_A 83 NPPDSEYCRCASALEKFFYFKLKEG 107 (112)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999999999999999875
No 6
>2d9e_A Peregrin; four-helix bundle, transcription activator, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=216.81 Aligned_cols=108 Identities=26% Similarity=0.341 Sum_probs=102.7
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
..++...|..||+.|++|+.+|+|.+||++.. +||||++|++||||+||++||+++.|.++.+|.+||+|||.||+.|
T Consensus 5 ~~pl~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~Na~~y 82 (121)
T 2d9e_A 5 SSGFLILLRKTLEQLQEKDTGNIFSEPVPLSE--VPDYLDHIKKPMDFFTMKQNLEAYRYLNFDDFEEDFNLIVSNCLKY 82 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHCSSCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCccHhhCCcCCccc--cCCHHHHcCCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEYN 477 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i~~~~~ 477 (662)
|+++|.+|.+|..|++.|+..|..+...+.
T Consensus 83 N~~~s~~~~~A~~L~~~~~~~l~~~~~~~~ 112 (121)
T 2d9e_A 83 NAKDTIFYRAAVRLREQGGAVLRQARRQAE 112 (121)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999998876554
No 7
>3mb3_A PH-interacting protein; PHIP, pleckstrin homology domain interacting protein, DCAF14 DDB1 and CUL4 associated factor 14, SGC; 2.25A {Homo sapiens}
Probab=99.94 E-value=2.5e-27 Score=220.59 Aligned_cols=111 Identities=32% Similarity=0.539 Sum_probs=105.8
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
...+.+.|..||+.|++|+.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 19 ~~~l~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 96 (135)
T 3mb3_A 19 IQAWKKQCEELLNLIFQCEDSEPFRQPVDLLE--YPDYRDIIDTPMDFATVRETLEAGNYESPMELCKDVRLIFSNSKAY 96 (135)
T ss_dssp SSTHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCChhhcCCCChhh--CCCHHHHhCCCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999976 9999999999999999999999999999999999999999999999
Q ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006060 448 NPK-GQDVHIMAEQLLKIFEDKWVVIESEYNREM 480 (662)
Q Consensus 448 N~~-gS~V~~~A~~Lek~FE~~~~~i~~~~~~E~ 480 (662)
|++ +|.||.+|..|+++|++.|..+..++...+
T Consensus 97 N~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~~~ 130 (135)
T 3mb3_A 97 TPSKRSRIYSMSLRLSAFFEEHISSVLSDYKSAL 130 (135)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 997 999999999999999999999988876643
No 8
>3p1f_A CREB-binding protein; structural genomics consortium, SGC, CBP, crebbp, CREB bindi protein isoform A, KAT3A, RSTS, RST, bromodomain, transcrip; HET: 3PF; 1.63A {Homo sapiens} SCOP: a.29.2.1 PDB: 3dwy_A 3p1d_A 3p1c_A 3p1e_A* 3svh_A* 4a9k_A* 1jsp_B* 2d82_A* 2l84_A* 2l85_A* 2rny_A* 3i3j_A
Probab=99.94 E-value=3.3e-27 Score=215.17 Aligned_cols=108 Identities=32% Similarity=0.569 Sum_probs=102.6
Q ss_pred chHHHHHHHHHHHHHHc-CCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 006060 368 GSKIFKSCSALLEKLMK-HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k-~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~ 446 (662)
..++.+.|..+|..|++ ++.+|+|.+|||+..+++||||++|++||||+||++||++|.|.++.+|..||+|||+||+.
T Consensus 9 ~~el~~~l~~~l~~l~~~~~~s~~F~~pv~~~~~~~pdY~~iI~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~ 88 (119)
T 3p1f_A 9 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWL 88 (119)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchhcCCCCchhccCCCHHHHhcCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999998 67999999999999767999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 447 YNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (662)
Q Consensus 447 YN~~gS~V~~~A~~Lek~FE~~~~~i~~~ 475 (662)
||+++|.++.+|..|+++|++.|..+...
T Consensus 89 yN~~~s~i~~~A~~L~~~f~~~~~~~~~~ 117 (119)
T 3p1f_A 89 YNRKTSRVYKFCSKLAEVFEQEIDPVMQS 117 (119)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987543
No 9
>3nxb_A CAT eye syndrome critical region protein 2; structural genomics consortium, SGC, CECR2, CAT eye syndrome chromosome region candidate 2, bromodomain; 1.83A {Homo sapiens} SCOP: a.29.2.0
Probab=99.94 E-value=1.7e-27 Score=216.22 Aligned_cols=102 Identities=27% Similarity=0.536 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
..++++.|..||+.|++|+.+|+|..|||+.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 14 ~~~~~~~~~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 91 (116)
T 3nxb_A 14 LDDDFTAMYKVLDVVKAHKDSWPFLEPVDESY--APNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKY 91 (116)
T ss_dssp -CCHHHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCCCcHhhcCcCChhh--ccChHHHcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 55689999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVV 471 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~ 471 (662)
|+++|.++.+|..|+++|++.|.+
T Consensus 92 N~~~s~~~~~A~~L~~~f~~~~~k 115 (116)
T 3nxb_A 92 NGESSEYTKMSDNLERCFHRAMMK 115 (116)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999998864
No 10
>3q2e_A Bromodomain and WD repeat-containing protein 1; structural genomics consortium, SGC, cell cycle progression, signal transduction, apoptosis; 1.74A {Homo sapiens}
Probab=99.94 E-value=3.9e-27 Score=216.16 Aligned_cols=108 Identities=36% Similarity=0.612 Sum_probs=102.3
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
..+.+.|..||+.|++|+.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 9 ~~~~~~c~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~yN 86 (123)
T 3q2e_A 9 SNWKKQCKELVNLIFQCEDSEPFRQPVDLVE--YPDYRDIIDTPMDFGTVRETLDAGNYDSPLEFCKDIRLIFSNAKAYT 86 (123)
T ss_dssp -CHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhCCCcHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHC
Confidence 5689999999999999999999999999986 99999999999999999999999999999999999999999999999
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 449 PK-GQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (662)
Q Consensus 449 ~~-gS~V~~~A~~Lek~FE~~~~~i~~~~~~ 478 (662)
++ +|.||.+|..|+++|+++|+.+..++..
T Consensus 87 ~~~~s~i~~~A~~L~~~f~~~~~~~~~~~~~ 117 (123)
T 3q2e_A 87 PNKRSKIYSMTLRLSALFEEKMKKISSDFKI 117 (123)
T ss_dssp CCTTSHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 96 9999999999999999999999877643
No 11
>3fkm_X Signaling protein; bromodomain, malaria, structural genomics, structural genomi consortium, SGC; 2.50A {Plasmodium falciparum 3D7}
Probab=99.94 E-value=3.9e-27 Score=226.99 Aligned_cols=108 Identities=30% Similarity=0.537 Sum_probs=99.6
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhh
Q 006060 366 GTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAM 445 (662)
Q Consensus 366 ~~~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~ 445 (662)
+...++.+.|..||..|++++.+|+|..|||+..+++||||+||++||||+||++||.++.|.++.+|+.||+|||.||+
T Consensus 17 p~~~~~~~~~~~il~~L~~~~~s~~F~~PVd~~~~~~pdY~~iIk~PmDL~tI~~kL~~~~Y~s~~ef~~Dv~Lif~Na~ 96 (166)
T 3fkm_X 17 QGNKQWYLLANQLILSLSKYEGGHIFEKLVDAKKQNCPDYYDVIKNPMSFSCIKTKLKKGQYAYPSEFVKDVQLIFDNCS 96 (166)
T ss_dssp CTTHHHHHHHHHHHHHHTTSTTGGGGSSCCC-----CCCGGGCCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhCCCChhhcCCCChhhccCCCHHHhcCCCCCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHH
Confidence 34688999999999999999999999999999877899999999999999999999999999999999999999999999
Q ss_pred hhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 446 TYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 446 ~YN~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
.||+++|.|+.+|..|+++|++.|..+.
T Consensus 97 ~yN~~~s~i~~~A~~L~~~f~~~l~~~~ 124 (166)
T 3fkm_X 97 LYNTSNSVVAITGKNIETYFNNQLIVMG 124 (166)
T ss_dssp HSSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9999999999999999999999998874
No 12
>4alg_A Bromodomain-containing protein 2; signaling protein, inhibitor, histone, epigenetic reader; HET: 1GH; 1.60A {Homo sapiens} PDB: 4a9e_A 4a9h_A* 4a9i_A* 4a9j_A* 4a9m_A* 4a9n_A* 4a9o_A* 4a9p_A* 4a9f_A* 4alh_A* 4akn_A* 2yek_A* 2ydw_A* 2yw5_A
Probab=99.94 E-value=3.4e-27 Score=224.86 Aligned_cols=106 Identities=37% Similarity=0.649 Sum_probs=100.7
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
..++...|..||+.|++++.+|+|.+|||+..+++||||+||++||||+||++||+++.|.++.+|+.||+|||.||++|
T Consensus 30 t~~l~~~~~~il~~l~~~~~a~~F~~PVd~~~~~~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~Na~~Y 109 (154)
T 4alg_A 30 TNQLQYLHKVVMKALWKHQFAWPFRQPVDAVKLGLPDYHKIIKQPMDMGTIKRRLENNYYWAASECMQDFNTMFTNCYIY 109 (154)
T ss_dssp BHHHHHHHHTHHHHHHTSTTCGGGSSCCCTTTTTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhCcCchhhcCCCChhhccCCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46677778889999999999999999999998789999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
|++++.|+.+|..|+++|++.|+.++
T Consensus 110 N~~~s~i~~~A~~L~~~f~~~~~~l~ 135 (154)
T 4alg_A 110 NKPTDDIVLMAQTLEKIFLQKVASMP 135 (154)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999999999999998764
No 13
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=99.94 E-value=9.8e-28 Score=231.00 Aligned_cols=142 Identities=25% Similarity=0.380 Sum_probs=121.3
Q ss_pred CCCCCCccchhhhc-cCCCCcchhhhccCchhhhhccchhhhhccCCCCCCCcCccccccCCcCCCCcccCCCCCchHHH
Q 006060 294 SRPLNQLSISTVEN-SLGLSENVEKEKRTPKANQFYRNSEFLLAKDKFPPAESNKKSKLNGKKQAGNELAHGFGTGSKIF 372 (662)
Q Consensus 294 ~rp~~~~~v~i~e~-sq~~te~~~~ekr~p~~~k~y~~S~f~~~~dk~pp~~s~Kk~k~~~kk~~~~~~~~~~~~~~~l~ 372 (662)
.+|||+.|+++... .....+|+|..|+....... ...++..+.+
T Consensus 30 ~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~~~~-----------------------------------~~~~l~~~~~ 74 (174)
T 2ri7_A 30 QNWYHGRCVGILQSEAELIDEYVCPQCQSTEDAMT-----------------------------------VLTPLTEKDY 74 (174)
T ss_dssp CCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHHHHT-----------------------------------TTSBCCHHHH
T ss_pred CchhChhhcCCchhhccCccCeecCCCcchhcccc-----------------------------------ccccCCHHHH
Confidence 48999999998763 33356788887765321000 0012246788
Q ss_pred HHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCC
Q 006060 373 KSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQ 452 (662)
Q Consensus 373 k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS 452 (662)
+.|..||..|+.|+.+|+|.+||++.. +||||++|++||||+||++||+++.|.++.+|.+||+|||+||+.||+++|
T Consensus 75 ~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~~s 152 (174)
T 2ri7_A 75 EGLKRVLRSLQAHKMAWPFLEPVDPND--APDYYGVIKEPMDLATMEERVQRRYYEKLTEFVADMTKIFDNCRYYNPSDS 152 (174)
T ss_dssp HHHHHHHHHHHTSGGGTTTSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCBHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHhhhhhhhhhcCCCccc--CCchHHHhCCcCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999986 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 006060 453 DVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 453 ~V~~~A~~Lek~FE~~~~~i 472 (662)
.++.+|..|+++|+++|+.+
T Consensus 153 ~~~~~A~~L~~~f~~~~~~~ 172 (174)
T 2ri7_A 153 PFYQCAEVLESFFVQKLKGF 172 (174)
T ss_dssp HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999988764
No 14
>2dat_A Possible global transcription activator SNF2L2; bromodomain, all alpha protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.94 E-value=5.1e-27 Score=215.52 Aligned_cols=104 Identities=27% Similarity=0.419 Sum_probs=98.9
Q ss_pred chHHHHHHHHHHHHHHcCC------CCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006060 368 GSKIFKSCSALLEKLMKHK------HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k------~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF 441 (662)
...+.+.|..||+.|++++ .+|+|.+||+... +||||++|++||||+||++||+++.|.++.+|.+||+|||
T Consensus 11 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 88 (123)
T 2dat_A 11 PPKLTKQMNAIIDTVINYKDSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLGDLEKDVMLLC 88 (123)
T ss_dssp CHHHHHHHHHHHHHHHHCBCSSSCBSGGGGTSCCCTTT--SCHHHHHCSSCCCHHHHHHHHTTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhhcccCCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 5789999999999999987 4899999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 442 ~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
.||+.||+++|.+|.+|..|+++|++.|+.++
T Consensus 89 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~~p 120 (123)
T 2dat_A 89 HNAQTFNLEGSQIYEDSIVLQSVFKSARQSGP 120 (123)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999988654
No 15
>1e6i_A Transcriptional activator GCN5; gene regulation, bromodomain, histone binding, N-acetyl lysine; HET: ALY; 1.87A {Saccharomyces cerevisiae} SCOP: a.29.2.1
Probab=99.94 E-value=3.7e-27 Score=216.05 Aligned_cols=101 Identities=32% Similarity=0.546 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 006060 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~ 450 (662)
.+..|..||+.|++|+.+|+|..|||+.. +||||++|++||||+||++||++|.|.++.+|.+||+|||+||+.||++
T Consensus 14 ~~~~~~~il~~l~~~~~a~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN~~ 91 (121)
T 1e6i_A 14 HDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 91 (121)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHcCCCchhhCCCCChhh--CcCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCC
Confidence 56889999999999999999999999876 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 006060 451 GQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 451 gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
+|.++.+|..|+++|+++|+.++
T Consensus 92 ~s~i~~~A~~L~~~f~~~~~~~p 114 (121)
T 1e6i_A 92 NTSYYKYANRLEKFFNNKVKEIP 114 (121)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999998874
No 16
>2grc_A Probable global transcription activator SNF2L4; bromodomain, BRG1, chromatin remodelling, acely-lysine binding, protein-protein interactions; 1.50A {Homo sapiens} PDB: 3uvd_A 2h60_A
Probab=99.94 E-value=1.3e-26 Score=214.52 Aligned_cols=106 Identities=27% Similarity=0.412 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHHHHcCC-------CCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHH
Q 006060 368 GSKIFKSCSALLEKLMKHK-------HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLT 440 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k-------~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLI 440 (662)
...+.+.|..||+.|++++ .+|+|..||+... +||||+||++||||+||++||.+|.|.++.+|.+||+||
T Consensus 9 ~~~l~~~~~~il~~l~~~~d~~~~~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~Li 86 (129)
T 2grc_A 9 PPNLTKKMKKIVDAVIKYKDSSSGRQLSEVFIQLPSRKE--LPEYYELIRKPVDFKKIKERIRNHKYRSLNDLEKDVMLL 86 (129)
T ss_dssp CHHHHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhcccccccCeeeHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 5789999999999999886 4899999999876 999999999999999999999999999999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 441 FHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (662)
Q Consensus 441 F~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~~ 475 (662)
|+||++||+++|.+|.+|..|+++|+..|+.+...
T Consensus 87 ~~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~~ 121 (129)
T 2grc_A 87 CQNAQTFNLEGSLIYEDSIVLQSVFTSVRQKIEKE 121 (129)
T ss_dssp HHHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999988654
No 17
>2i7k_A Bromodomain-containing protein 7; helix, LEFT-handed four-helix bundle, transcription; NMR {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=211.90 Aligned_cols=103 Identities=26% Similarity=0.336 Sum_probs=98.8
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
...+.+.|..||+.|++++.+++|..||++.. +||||+||++||||+||++||.+|.|.++.+|.+||+|||.||+.|
T Consensus 6 ~~~l~~~l~~il~~L~~~~~~~~F~~PVd~~~--~pdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Li~~Na~~y 83 (117)
T 2i7k_A 6 QTPLQEALNQLMRQLQRKDPSAFFSFPVTDFI--APGYSMIIKHPMDFSTMKEKIKNNDYQSIEELKDNFKLMCTNAMIY 83 (117)
T ss_dssp HHHHHHHHHHHHHHHHTSSGGGTSSSCCCTTT--SSSHHHHCSCCCCHHHHHHHHTTTSCCSHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHhCcccHHhcCCCCccc--cCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999865 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
|+++|.++.+|..|++.|++.|...
T Consensus 84 N~~~s~i~~~A~~L~~~f~~~~~~~ 108 (117)
T 2i7k_A 84 NKPETIYYKAAKKLLHSGMKILSQE 108 (117)
T ss_dssp SCSSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 18
>3rcw_A Bromodomain-containing protein 1; transcription, structural genomics, structural consortium, SGC; 2.21A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=213.31 Aligned_cols=109 Identities=28% Similarity=0.399 Sum_probs=103.9
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
...+...|..||+.|++|+.+|+|..||++.. +||||++|++||||+||++||++|.|.++.+|..||+|||.||+.|
T Consensus 11 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (135)
T 3rcw_A 11 LTPLTVLLRSVLDQLQDKDPARIFAQPVSLKE--VPDYLDHIKHPMDFATMRKRLEAQGYKNLHEFEEDFDLIIDNCMKY 88 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTCTTCSSSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCcchhhcCCCChhh--cCCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999986 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i~~~~~~ 478 (662)
|+++|.+|.+|..|++.|+..|..+...+..
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~~~~~~~ 119 (135)
T 3rcw_A 89 NARDTVFYRAAVRLRDQGGVVLRQARREVDS 119 (135)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988766543
No 19
>2yyn_A Transcription intermediary factor 1-alpha; bromo domain, structural genomics, NPPSFA; 2.50A {Homo sapiens}
Probab=99.93 E-value=2.4e-26 Score=214.39 Aligned_cols=104 Identities=32% Similarity=0.542 Sum_probs=98.5
Q ss_pred CchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHhh
Q 006060 367 TGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNK--NWYKSPKEFAEDVRLTFHNA 444 (662)
Q Consensus 367 ~~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~--g~Y~s~~EF~~DVrLIF~Nc 444 (662)
+.+..++.|..||..|++|+.+|+|..||+. ++||||+||++||||+||++||++ +.|.++.+|.+||+|||.||
T Consensus 17 m~p~~~~~c~~il~~L~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmDL~tI~~kL~~~~~~Y~s~~ef~~Dv~Lif~Na 93 (135)
T 2yyn_A 17 LTPIDKRKCERLLLFLYCHEMSLAFQDPVPL---TVPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQNC 93 (135)
T ss_dssp CCHHHHHHHHHHHHHHHTSGGGGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHHSSSCCCSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhCccchhhcCCCcc---cCCCHHHHcCCCCCHHHHHHHHhccccCCCCHHHHHHHHHHHHHHH
Confidence 3577889999999999999999999999997 389999999999999999999998 59999999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
++||+++|.|+.+|..|+++|++.|+.+.
T Consensus 94 ~~yN~~~s~i~~~A~~L~~~f~~~~~~~~ 122 (135)
T 2yyn_A 94 AEFNEPDSEVANAGIKLENYFEELLKNLY 122 (135)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998764
No 20
>3iu5_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; 1.63A {Homo sapiens}
Probab=99.93 E-value=1.7e-26 Score=209.74 Aligned_cols=104 Identities=19% Similarity=0.303 Sum_probs=98.4
Q ss_pred chHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006060 368 GSKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF 441 (662)
...+++.|..||+.|+++++ +|+|.+||+... +||||++|++||||+||++||+++.|.++.+|..||+|||
T Consensus 3 ~~~~~~~c~~il~~l~~~~d~~g~~~s~~F~~p~~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 80 (116)
T 3iu5_A 3 TVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRN--QPDYYEVVSQPIDLMKIQQKLKMEEYDDVNLLTADFQLLF 80 (116)
T ss_dssp SCCHHHHHHHHHHHHHHCBCTTCCBGGGGGSSCCCGGG--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCeeeHHhcCCCCccc--CCCHHHHhCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 34578999999999999854 999999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 442 ~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
.||+.||+++|.+|.+|..|+++|++.|+++.
T Consensus 81 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~l~ 112 (116)
T 3iu5_A 81 NNAKSYYKPDSPEYKAACKLWDLYLRTRNEFV 112 (116)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999998874
No 21
>3mb4_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 1.66A {Homo sapiens} PDB: 3g0j_A 2yqd_A
Probab=99.93 E-value=1.2e-26 Score=213.10 Aligned_cols=104 Identities=22% Similarity=0.328 Sum_probs=98.3
Q ss_pred chHHHHHHHHHHHHHHc------CCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006060 368 GSKIFKSCSALLEKLMK------HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k------~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF 441 (662)
...+.+.|..||+.|++ |+.+++|..||+... +||||++|++||||+||++||+++.|.++.+|..||+|||
T Consensus 13 ~~~l~~~~~~il~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~ 90 (124)
T 3mb4_A 13 MTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSE--LPDYYLTIKKPMDMEKIRSHMMANKYQDIDSMVEDFVMMF 90 (124)
T ss_dssp CCHHHHHHHHHHHHHHHCBCTTSCBGGGGGSCCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhHhcccCCcccHHhhcCCCccc--cCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 46788999999999998 455799999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 442 ~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
.||+.||+++|.+|.+|..|+++|++.|+.+.
T Consensus 91 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~ 122 (124)
T 3mb4_A 91 NNACTYNEPESLIYKDALVLHKVLLETRRDLE 122 (124)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999998864
No 22
>3ljw_A Protein polybromo-1; alpha helix, alternative splicing, bromodomain, chromatin RE DNA-binding, nucleus, phosphoprotein, transcription; 1.50A {Homo sapiens} PDB: 2ktb_B* 3hmf_A
Probab=99.93 E-value=4e-26 Score=208.59 Aligned_cols=106 Identities=31% Similarity=0.417 Sum_probs=100.9
Q ss_pred chHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006060 368 GSKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF 441 (662)
...+.+.|..||+.|+.+++ +++|.+||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||
T Consensus 6 p~~l~~~~~~ll~~l~~~~d~~g~~~s~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 83 (120)
T 3ljw_A 6 PAYLKEILEQLLEAIVVATNPSGRLISELFQKLPSKVQ--YPDYYAIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLA 83 (120)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCcCCCcccHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHHccCCCCCHHHHHHHHHHHH
Confidence 46788999999999999887 999999999877 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (662)
Q Consensus 442 ~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~~ 475 (662)
.||+.||+++|.++.+|..|+++|+++|+.++..
T Consensus 84 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 117 (120)
T 3ljw_A 84 KNAKTYNEPGSQVFKDANSIKKIFYMKKAEIEHH 117 (120)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999999999999999999999999998753
No 23
>3mqm_A Probable histone-lysine N-methyltransferase ASH1L; KIAA1420, absent small and homeotic disks prote homolog, lysine N-methyltransferase 2H, KMT2H; 2.54A {Homo sapiens}
Probab=99.93 E-value=4.9e-26 Score=209.50 Aligned_cols=109 Identities=18% Similarity=0.273 Sum_probs=102.2
Q ss_pred chHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006060 368 GSKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF 441 (662)
...+.+.|..|++.|+++++ +|+|.+||+... +||||++|++||||+||++||.+|.|.++.+|..||+|||
T Consensus 7 ~~~l~~~~~~i~~~l~~~~d~~g~~~s~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~ 84 (126)
T 3mqm_A 7 AARLAQIFKEICDGIISYKDSSRQALAAPLLNLPPKKK--NADYYEKISDPLDLITIEKQILTGYYKTVEAFDADMLKVF 84 (126)
T ss_dssp HHHHHHHHHHHHHHHHHCBCTTCCBTTGGGSSCCCGGG--CTTHHHHCSSCCCHHHHHHHHHHTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCCCChhHHhcCCCCccc--CCCHHHHcCCCCCHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35688899999999999765 999999999987 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (662)
Q Consensus 442 ~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~~~~~ 478 (662)
.||+.||+++|.+|.+|..|+++|++.|..+...+..
T Consensus 85 ~Na~~yN~~~s~~~~~A~~L~~~f~~~~~~~~~~l~~ 121 (126)
T 3mqm_A 85 RNAEKYYGRKSPVGRDVCRLRKAYYNARHEASAQIDE 121 (126)
T ss_dssp HHHHHHHCTTSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998777654
No 24
>3hme_A Bromodomain-containing protein 9; BRD9, bromodomain containing 9 isoform 1, LAVS3040, rhabdomyosarcoma antigen MU-RMS-40.8; 2.23A {Homo sapiens}
Probab=99.93 E-value=4.7e-26 Score=209.23 Aligned_cols=103 Identities=31% Similarity=0.379 Sum_probs=98.5
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
...+...|..||+.|++++.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 11 ~~p~~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 88 (123)
T 3hme_A 11 STPIQQLLEHFLRQLQRKDPHGFFAFPVTDAI--APGYSMIIKHPMDFGTMKDKIVANEYKSVTEFKADFKLMCDNAMTY 88 (123)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCSSSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCccHhhcCCCChhh--ccCHHHHCCCCCCHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 35688899999999999999999999999886 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
|+++|.++.+|..|++.|++.|...
T Consensus 89 N~~~s~~~~~A~~L~~~~~~~~~~~ 113 (123)
T 3hme_A 89 NRPDTVYYKLAKKILHAGFKMMSKE 113 (123)
T ss_dssp SCTTSHHHHHHHHHHHHHHHHTCHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988764
No 25
>3k2j_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo01D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.20A {Homo sapiens}
Probab=99.93 E-value=1.2e-25 Score=208.63 Aligned_cols=105 Identities=19% Similarity=0.324 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 006060 368 GSKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTF 441 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF 441 (662)
..++...|..+++.|..+.+ +|+|.+||+... +||||++|++||||+||++||+++.|.++.+|..||+|||
T Consensus 15 ~~kl~~~~~~l~~~l~~~~d~~g~~~s~~F~~pv~~~~--~PdY~~iIk~PMdL~tI~~kL~~~~Y~s~~ef~~Dv~Lif 92 (130)
T 3k2j_A 15 TENLYFQSMQLYDTVRSCRNNQGQLIAEPFYHLPSKKK--YPDYYQQIKMPISLQQIRTKLKNQEYETLDHLECDLNLMF 92 (130)
T ss_dssp HHHHHHHHHHHHHHHHTCBCSSSCBTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhcccCCCccHhhcCCCChhh--CccHHHHcCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 57899999999999998765 999999999876 9999999999999999999999999999999999999999
Q ss_pred HhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006060 442 HNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (662)
Q Consensus 442 ~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~ 474 (662)
.||+.||+++|.++.+|..|+++|++.|+.+..
T Consensus 93 ~Na~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 125 (130)
T 3k2j_A 93 ENAKRYNVPNSAIYKRVLKLQQVMQAKKKELAR 125 (130)
T ss_dssp HHHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998764
No 26
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=99.93 E-value=2.7e-25 Score=216.28 Aligned_cols=104 Identities=32% Similarity=0.551 Sum_probs=98.8
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhc--CCCCCHHHHHHHHHHHHHh
Q 006060 366 GTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNK--NWYKSPKEFAEDVRLTFHN 443 (662)
Q Consensus 366 ~~~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~--g~Y~s~~EF~~DVrLIF~N 443 (662)
.+...+++.|..||..|+.|+.+++|..||+.. +||||+||++||||+||++||++ +.|.++.+|.+||+|||+|
T Consensus 77 ~l~~~~~~~c~~il~~l~~~~~s~~F~~Pv~~~---~pdY~~iIk~PmdL~tI~~kl~~~~~~Y~s~~ef~~Dv~li~~N 153 (184)
T 3o36_A 77 KLTPIDKRKCERLLLFLYCHEMSLAFQDPVPLT---VPDYYKIIKNPMDLSTIKKRLQEDYSMYSKPEDFVADFRLIFQN 153 (184)
T ss_dssp CCCHHHHHHHHHHHHHHHHSTTCHHHHSCCCTT---STTHHHHCSSCCCHHHHHHHHHSTTCSCCSHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHhchhhhhhccccccC---CCchhhhcCCCCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence 346788999999999999999999999999853 89999999999999999999998 7999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 444 AMTYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 444 c~~YN~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
|+.||+++|.|+.+|..|+++|++.|+.+
T Consensus 154 a~~yN~~~s~v~~~a~~L~~~f~~~~~~~ 182 (184)
T 3o36_A 154 CAEFNEPDSEVANAGIKLENYFEELLKNL 182 (184)
T ss_dssp HHHHSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999875
No 27
>3uv4_A Second bromodomain of human transcription initiat TFIID subunit 1 (TAF1); structural genomics consortium, SGC; 1.89A {Homo sapiens} PDB: 3hmh_A
Probab=99.92 E-value=4.2e-25 Score=211.44 Aligned_cols=109 Identities=25% Similarity=0.470 Sum_probs=98.0
Q ss_pred chHHHHHHHHHHHH-----HHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 006060 368 GSKIFKSCSALLEK-----LMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFH 442 (662)
Q Consensus 368 ~~~l~k~C~~IL~~-----L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~ 442 (662)
++.....|..||.. |+.++.+|||..||++.. +||||+||++||||+||++||.++.|.++.+|..||+|||.
T Consensus 23 ~~d~~~~l~~iL~~i~~~kl~~~~~s~~F~~PVd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~ 100 (158)
T 3uv4_A 23 MDDDQVAFSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILA 100 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHcCCCchhhcCcCChhh--cccHHHHcCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 44556666666665 455788999999999886 99999999999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 443 NAMTYNPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (662)
Q Consensus 443 Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~~~~~ 478 (662)
||+.||+++|.|+.+|..|.++|+..|..+...+..
T Consensus 101 Na~~yN~~~s~i~~~A~~L~~~~~~~l~e~~~~l~~ 136 (158)
T 3uv4_A 101 NSVKYNGPESQYTKTAQEIVNVCYQTLTEYDEHLTQ 136 (158)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998876654
No 28
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=99.92 E-value=7.3e-25 Score=215.10 Aligned_cols=102 Identities=21% Similarity=0.277 Sum_probs=95.4
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccC--CCCChHHHHHHHhcC---CCCCHHHHHHHHHHH
Q 006060 366 GTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIR--HPMDLGTVKTRLNKN---WYKSPKEFAEDVRLT 440 (662)
Q Consensus 366 ~~~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK--~PMDLsTIkkKL~~g---~Y~s~~EF~~DVrLI 440 (662)
.+.+..+++|..||..|+.|+.+|||++||+ |+||+||+ +||||+||++||+++ .|.++.+|++||+||
T Consensus 72 ~m~~~~~~~c~~iL~~l~~~~~s~pF~~pV~------~~Yy~iIk~~~PMDL~tIk~kL~~~~~~~Y~s~~eF~~Dv~Li 145 (189)
T 2ro1_A 72 KLSPANQRKCERVLLALFCHEPCRPLHQLAT------DSTFSLDQPGGTLDLTLIRARLQEKLSPPYSSPQEFAQDVGRM 145 (189)
T ss_dssp SSCHHHHHHHHHHHHHHHHSTTHHHHHSCSC------CTTCSSSCSSCCCCHHHHHHHHHTSSSSCCSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcccCccchhhcCCCC------hhhhccccCCCcccHHHHHHHHhcCCCcccCCHHHHHHHHHHH
Confidence 4567788999999999999999999999998 68999998 899999999999999 999999999999999
Q ss_pred HHhhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006060 441 FHNAMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (662)
Q Consensus 441 F~Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~ 474 (662)
|+||++|| +++.++.+|..|+++|+++|+.+..
T Consensus 146 f~N~~~yN-~~s~~~~~a~~L~~~Fe~~~~~~~~ 178 (189)
T 2ro1_A 146 FKQFNKLT-EDKADVQSIIGLQRFFETRMNEAFG 178 (189)
T ss_dssp HHHHHHHC-CSSCSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999 5889999999999999999988743
No 29
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=99.91 E-value=2.1e-24 Score=213.98 Aligned_cols=105 Identities=35% Similarity=0.585 Sum_probs=98.8
Q ss_pred CCchHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhc---CCCCCHHHHHHHHHHHHH
Q 006060 366 GTGSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNK---NWYKSPKEFAEDVRLTFH 442 (662)
Q Consensus 366 ~~~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~---g~Y~s~~EF~~DVrLIF~ 442 (662)
.+...+++.|..||..|++|+.+|+|++||+. ++||||+||++||||+||++||++ +.|.++.+|.+||+|||+
T Consensus 77 ~ls~~~~~~c~~il~~l~~~~~s~~F~~Pv~~---~~pdY~~iIk~PmdL~tI~~kl~~~~~~~Y~s~~~f~~Dv~li~~ 153 (207)
T 3u5n_A 77 GLSPVDQRKCERLLLYLYCHELSIEFQEPVPA---SIPNYYKIIKKPMDLSTVKKKLQKKHSQHYQIPDDFVADVRLIFK 153 (207)
T ss_dssp SSCHHHHHHHHHHHHHHHTSTTCGGGSSCCCT---TSTTHHHHCSSCCCHHHHHHHHSTTSTTCCSSHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHhccchhhhhccCCh---hhccHhHHhCCccCHHHHHHHHhcccCCCcCCHHHHHHHHHHHHH
Confidence 34578899999999999999999999999987 389999999999999999999997 799999999999999999
Q ss_pred hhhhhCC-----------------CCCHHHHHHHHHHHHHHHHHHHHH
Q 006060 443 NAMTYNP-----------------KGQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 443 Nc~~YN~-----------------~gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
||+.||+ +++.++.+|..|+.+|+.+|+.+.
T Consensus 154 Na~~yN~~~s~v~~~A~~l~~~~~~~s~i~~~a~~L~~~fe~~~~~~~ 201 (207)
T 3u5n_A 154 NCERFNEMMKVVQVYADTQEINLKADSEVAQAGKAVALYFEDKLTEIY 201 (207)
T ss_dssp HHHHHHHHHHHHC----------CCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHCCCcchHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999 999999999999999999998763
No 30
>3dai_A ATPase family AAA domain-containing protein 2; ancca, AAA+ nuclear coregulator cancer-associated Pro2000 protein, two AAA DOMA containing protein; 1.95A {Homo sapiens} PDB: 3lxj_A
Probab=99.91 E-value=2.5e-24 Score=199.37 Aligned_cols=107 Identities=25% Similarity=0.376 Sum_probs=96.8
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
+.++...|..+|..|+.|+.+|+|..|||+.. +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.|
T Consensus 8 l~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 85 (130)
T 3dai_A 8 FRELRIFLRNVTHRLAIDKRFRVFTKPVDPDE--VPDYVTVIKQPMDLSSVISKIDLHKYLTVKDYLRDIDLICSNALEY 85 (130)
T ss_dssp HHHHHHHHHHHHHHHHTSGGGGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCccHhhcCCCChhh--cCCHHHHcCCCCCHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHH----HHHHHHHHHHHHHHHH-HHHHHH
Q 006060 448 NPKGQDV----HIMAEQLLKIFEDKWV-VIESEY 476 (662)
Q Consensus 448 N~~gS~V----~~~A~~Lek~FE~~~~-~i~~~~ 476 (662)
|+++|++ +.+|..|++.|...+. .+...+
T Consensus 86 N~~~s~~~~~i~~~A~~L~~~~~~~i~~el~~~~ 119 (130)
T 3dai_A 86 NPDRDPGDRLIRHRACALRDTAYAIIKEELDEDF 119 (130)
T ss_dssp CCSSSHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999876 6788888888888775 444443
No 31
>3tlp_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo-1D, PBRM1, BRG associated factor 180, structural genomics consortium, SGC; 2.13A {Homo sapiens}
Probab=99.91 E-value=3e-24 Score=203.12 Aligned_cols=102 Identities=25% Similarity=0.404 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHcCCC-------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHh
Q 006060 371 IFKSCSALLEKLMKHKH-------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHN 443 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~-------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~N 443 (662)
....|..||..|+.+.. +++|..||+... +||||+||++||||+||++||++|.|.++.+|..||+|||.|
T Consensus 25 ~~~~~k~ll~~l~~~~~~~~~~~~~~~F~~~~~~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~ef~~D~~li~~N 102 (150)
T 3tlp_A 25 RKQRMKILFNVVLEAREPGSGRRLCDLFMVKPSKKD--YPDYYKIILEPMDLKIIEHNIRNDKYAGEEGMIEDMKLMFRN 102 (150)
T ss_dssp HHHHHHHHHHHHHHCBCTTTCCBGGGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCcccHHhcCCCchhh--CcCHHHHhCCCCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Confidence 35677888888877654 899999999876 999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006060 444 AMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (662)
Q Consensus 444 c~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~ 474 (662)
|+.||+++|.||.+|..|+++|++.|..+..
T Consensus 103 a~~yN~~~s~i~~~A~~L~~~f~~~~~~l~~ 133 (150)
T 3tlp_A 103 ARHYNEEGSQVYNDAHILEKLLKEKRKELGP 133 (150)
T ss_dssp HHHHSCTTSHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999999999999999998753
No 32
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.89 E-value=1.9e-23 Score=214.30 Aligned_cols=109 Identities=26% Similarity=0.486 Sum_probs=103.8
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
...+...|..||..|++|+.+|+|..||++.. +||||++|++||||+||++||.+|.|.++.+|..||+|||+||+.|
T Consensus 12 ~~~l~~~l~~il~~l~~~~~~~~F~~pv~~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~~~~~f~~D~~li~~Na~~y 89 (265)
T 3uv5_A 12 MVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 89 (265)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCchhhhCCCChhh--cCCHHHHhCCCCcHHHHHHHHHcCCCCCHHHHHHHHHHHHhhhhhc
Confidence 45789999999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i~~~~~~ 478 (662)
|+++|.|+.+|..|+++|+..|..+...+..
T Consensus 90 N~~~s~i~~~A~~l~~~~~~~~~~~~~~~~~ 120 (265)
T 3uv5_A 90 NGPKHSLTQISQSMLDLCDEKLKEKEDKLAR 120 (265)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999999999999999999999998766543
No 33
>2dkw_A Hypothetical protein KIAA1240; bromodomain-like, five-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=5.2e-23 Score=191.38 Aligned_cols=96 Identities=28% Similarity=0.437 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
..++...|..||+.|+.|+.+|+|..| +||||+||++||||+||++||.++.|.++.+|..||+|||+||+.|
T Consensus 10 ~~~L~~~~~~il~~l~~~~~~~~F~~P-------~pdY~~iIk~PmDL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~y 82 (131)
T 2dkw_A 10 LRELRLFLRDVTKRLATDKRFNIFSKP-------VSDYLEVIKEPMDLSTVITKIDKHNYLTAKDFLKDIDLICSNALEY 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHSGGGCTTSSC-------CSSCTTSCSSCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhCccchhhcCc-------CccHHhHcCCCcCHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999998 6999999999999999999999999999999999999999999999
Q ss_pred CCCCCH----HHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQD----VHIMAEQLLKIFEDKWV 470 (662)
Q Consensus 448 N~~gS~----V~~~A~~Lek~FE~~~~ 470 (662)
|+++|+ ++.+|..|++.|...++
T Consensus 83 N~~~s~~~~~i~~~A~~L~~~~~~~l~ 109 (131)
T 2dkw_A 83 NPDKDPGDKIIRHRACTLKDTAHAIIA 109 (131)
T ss_dssp CCCSSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHH
Confidence 999996 57899999999888774
No 34
>3uv5_A Transcription initiation factor TFIID subunit 1; tandem bromodomain, TAF1, cell cycle gene 1 protein, TBP-ASS factor 250 kDa; 2.03A {Homo sapiens} PDB: 1eqf_A
Probab=99.88 E-value=1.2e-22 Score=208.52 Aligned_cols=106 Identities=24% Similarity=0.477 Sum_probs=95.9
Q ss_pred HHHHHHHHHHH-HHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCC
Q 006060 371 IFKSCSALLEK-LMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNP 449 (662)
Q Consensus 371 l~k~C~~IL~~-L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~ 449 (662)
+...|..++.+ |+.|+.+|+|+.||++.. +||||++|++||||+||++||.+|.|.++.+|..||+|||+||+.||+
T Consensus 137 ~~~il~~i~~~~l~~~~~~~~F~~pv~~~~--~pdY~~iIk~Pmdl~tI~~kl~~~~Y~~~~~f~~D~~lif~Na~~yN~ 214 (265)
T 3uv5_A 137 FSFILDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNG 214 (265)
T ss_dssp HHHHHHHHHHHTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhhhhhHHHhCCCChhH--hCcHHHHhCCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCC
Confidence 34445555543 778899999999999987 999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 450 KGQDVHIMAEQLLKIFEDKWVVIESEYNR 478 (662)
Q Consensus 450 ~gS~V~~~A~~Lek~FE~~~~~i~~~~~~ 478 (662)
++|.||.+|..|+.+|+..|..+...+..
T Consensus 215 ~~s~~~~~A~~l~~~~~~~~~~~~~~~~~ 243 (265)
T 3uv5_A 215 PESQYTKTAQEIVNVCYQTLTEYDEHLTQ 243 (265)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776543
No 35
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.87 E-value=1e-22 Score=211.83 Aligned_cols=107 Identities=25% Similarity=0.481 Sum_probs=101.4
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
...+...|..||+.|+.|+.+|+|+.||++.. +||||+||++||||+||++||+++.|.++.+|..||+|||+||++|
T Consensus 45 ~~~l~~~~~~il~~l~~~~~a~~F~~pV~~~~--~pdY~~iIk~PmDL~tIk~kl~~~~Y~s~~~f~~D~~li~~Na~~y 122 (292)
T 3aad_A 45 MVTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATY 122 (292)
T ss_dssp HHHHHHHHHHHHHHHSSSTTCGGGSSSCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCcchhhcCCCCchh--cccHHHHcCCcCCHHHHHHHhhCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 35577899999999999999999999999987 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVIESEY 476 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i~~~~ 476 (662)
|+++|+++.+|..|+++|++.|..+...+
T Consensus 123 N~~~s~i~~~A~~L~~~~~~~~~~~~~~~ 151 (292)
T 3aad_A 123 NGPKHSLTQISQSMLDLCDEKLKEKEDKL 151 (292)
T ss_dssp TCSSSHHHHHHTHHHHTTTTTGGGSHHHH
T ss_pred cCCchHHHHHHHHHHHHHHhhhhcchhhh
Confidence 99999999999999999999998876554
No 36
>3aad_A Transcription initiation factor TFIID subunit 1; protein-protein complex, bromodomain, transcription, transcr regulation, chromatin regulator, transcription-C complex; 3.30A {Homo sapiens}
Probab=99.86 E-value=8e-22 Score=205.15 Aligned_cols=102 Identities=25% Similarity=0.529 Sum_probs=93.1
Q ss_pred HHHHH-HHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCH
Q 006060 375 CSALL-EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQD 453 (662)
Q Consensus 375 C~~IL-~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~ 453 (662)
|..++ .+|+.++.+|+|..|||+.. +||||+||++||||+||++||.+|.|.++.+|..||+|||+||+.||+++|.
T Consensus 174 l~~i~~~~l~~~~~s~~F~~pvd~~~--~pdY~~iIk~PmdL~tI~~kl~~~~Y~s~~~f~~D~~Li~~Na~~yN~~~s~ 251 (292)
T 3aad_A 174 LDNIVTQKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQ 251 (292)
T ss_dssp HHHHHHHTGGGSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHhhhhhhcCcchhHHHhcccccc--cccHHHHcCCcCCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
Confidence 33433 34788999999999999876 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 454 VHIMAEQLLKIFEDKWVVIESEYNR 478 (662)
Q Consensus 454 V~~~A~~Lek~FE~~~~~i~~~~~~ 478 (662)
+|.+|..|+++|+..|..+...+..
T Consensus 252 i~~~A~~L~~~~~~~~~~~~~~l~~ 276 (292)
T 3aad_A 252 YTKTAQEIVNVCYQTLTEYDEHLTQ 276 (292)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998776543
No 37
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.84 E-value=2.5e-21 Score=203.24 Aligned_cols=87 Identities=29% Similarity=0.331 Sum_probs=83.6
Q ss_pred cCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHH
Q 006060 384 KHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLK 463 (662)
Q Consensus 384 k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~~A~~Lek 463 (662)
.|+.+|+|++|||+.. +||||+||++||||+||++||++|.|.++.+|..||+|||+||++||+++|.||.+|..|++
T Consensus 177 ~~~~s~~F~~pvd~~~--~PdY~~iIk~PMDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~ 254 (311)
T 2r0y_A 177 KVKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTN 254 (311)
T ss_dssp SSCTTGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHH
T ss_pred CCccHHHHhCCCChhh--cccHHHHhCCccCHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3667999999999986 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH
Q 006060 464 IFEDKWVVI 472 (662)
Q Consensus 464 ~FE~~~~~i 472 (662)
+|+.+|+..
T Consensus 255 ~f~~~~~~~ 263 (311)
T 2r0y_A 255 YFNYLIQKE 263 (311)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHh
Confidence 999999873
No 38
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.84 E-value=4e-21 Score=205.31 Aligned_cols=86 Identities=28% Similarity=0.322 Sum_probs=83.2
Q ss_pred CCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHHHHHHH
Q 006060 385 HKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAEQLLKI 464 (662)
Q Consensus 385 ~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~~A~~Lek~ 464 (662)
|+.+|+|++|||+.. +||||+||++||||+||++||+++.|.++.+|..||+|||+||+.||+++|.||.+|..|+++
T Consensus 228 ~~~s~~F~~pvd~~~--~PdY~~iIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~Lif~N~~~yN~~~s~i~~~A~~L~~~ 305 (361)
T 2r10_A 228 VKLSEPFMELVDKDE--LPEYYEIVHSPMALSIVKQNLEIGQYSKIYDFIIDMLLVFQNAHIFNDPSALIYKDATTLTNY 305 (361)
T ss_dssp SCTTGGGSSCCCTTT--CTHHHHHCSSCCCHHHHHHHHHHTCCCBHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHH
T ss_pred CcchhcccCCCChhh--cccHHHHhcCcccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 567999999999986 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH
Q 006060 465 FEDKWVVI 472 (662)
Q Consensus 465 FE~~~~~i 472 (662)
|+..|+.+
T Consensus 306 f~~~~~~~ 313 (361)
T 2r10_A 306 FNYLIQKE 313 (361)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 99999874
No 39
>2r10_A Chromatin structure-remodeling complex protein RSC4, linker, histone H3; bromodomain, remodeler, acetylation, transcription; HET: ALY; 2.20A {Saccharomyces cerevisiae} PDB: 2r0v_A*
Probab=99.79 E-value=5.6e-20 Score=196.45 Aligned_cols=101 Identities=23% Similarity=0.208 Sum_probs=91.3
Q ss_pred chHHHHHHHHHHHHHHcCC--CCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCC-CHHHHHHHHHHHHHhh
Q 006060 368 GSKIFKSCSALLEKLMKHK--HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYK-SPKEFAEDVRLTFHNA 444 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k--~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~-s~~EF~~DVrLIF~Nc 444 (662)
+..+...|..+|+.|.+.. .+++|+.||+... +||||+||++||||+||++|| +.|. ++.+|..||+|||+||
T Consensus 76 ~~~~~~~~~~~l~~l~~~~~~~~~~F~~p~~~~~--~PdY~~iIk~Pmdl~tI~~kl--~~y~~~~~~f~~D~~li~~Na 151 (361)
T 2r10_A 76 IPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNC 151 (361)
T ss_dssp CTTHHHHHHHHHHHHHHHTHHHHGGGSSCCCTTT--CTTHHHHCSSCCCHHHHHTSC--CCSTTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCcccHHhcCCCCccc--CCChHhhcCCCcCHHHHHHHh--hccCCCHHHHHHHHHHHHHHH
Confidence 4557788999999997643 4899999999877 999999999999999999998 4555 8999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
+.||+++|.||.+|..|+++|+..|.+.
T Consensus 152 ~~yN~~~s~i~~~a~~l~~~~~~~~~k~ 179 (361)
T 2r10_A 152 QAYNEYDSLIVKNSMQVVMLIEFEVLKA 179 (361)
T ss_dssp HHHBCSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999998864
No 40
>2r0y_A Chromatin structure-remodeling complex protein RSC4; bromodomain, chromatin, remodeler, RSC, acetylation, transcription, chromatin regulator, nucleus, phosphorylation; HET: ALY; 1.75A {Saccharomyces cerevisiae} PDB: 2r0s_A
Probab=99.78 E-value=1.1e-19 Score=190.71 Aligned_cols=101 Identities=23% Similarity=0.208 Sum_probs=90.0
Q ss_pred chHHHHHHHHHHHHHHcCC--CCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCC-CHHHHHHHHHHHHHhh
Q 006060 368 GSKIFKSCSALLEKLMKHK--HGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYK-SPKEFAEDVRLTFHNA 444 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k--~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~-s~~EF~~DVrLIF~Nc 444 (662)
.+.+..+|..+|..+...- .+++|++||+... +||||+||++||||+||++|| +.|. ++.+|..||+|||+||
T Consensus 26 ~p~~~~~~~~~L~~~~~~~r~~~~~F~~p~~~~~--~PdY~~iIk~PmDL~tI~~kl--~~y~~s~~~f~~D~~li~~Na 101 (311)
T 2r0y_A 26 IPKFNRFISFTLDVLIDKYKDIFKDFIKLPSRKF--HPQYYYKIQQPMSINEIKSRD--YEYEDGPSNFLLDVELLTKNC 101 (311)
T ss_dssp CTTHHHHHHHHHHHHHHHSHHHHGGGSSCCCTTT--CHHHHHHCSSCCCHHHHHHSC--CCSTTHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCchhHHhcCCCCccc--CCChHHHcCCCCCHHHHHHHH--hcccCCHHHHHHHHHHHHHHH
Confidence 3456777888888777643 5899999999887 999999999999999999998 5565 8999999999999999
Q ss_pred hhhCCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 445 MTYNPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 445 ~~YN~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
++||+++|.||.+|..|+++|++.|.+.
T Consensus 102 ~~yN~~~s~i~~~A~~l~~~~~~~~~k~ 129 (311)
T 2r0y_A 102 QAYNEYDSLIVKNSMQVVMLIEFEVLKA 129 (311)
T ss_dssp HHHSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHccCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999865
No 41
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=6.3e-18 Score=147.92 Aligned_cols=74 Identities=39% Similarity=0.677 Sum_probs=69.1
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCChhcHHHHHHHHHhhcCCCC-CCCCeEEEECCCCCHHHHHHHHHHHHHHHhhh
Q 006060 546 DPHKRDMTYDEKQKLSTNLQSLPSEKLDNIVQIIKKRNSSLF-QHDDEIEVDIDSVDAETLWELDRFVTNYKKSL 619 (662)
Q Consensus 546 dp~kR~MT~EEK~kLs~~I~~Lp~EkL~~VVqIIke~~P~l~-~~~dEIEIDIDsLd~~TLreL~ryV~~~kK~~ 619 (662)
++.+++||++||++|+.+|+.||+++|.+||+||++++|.+. ..++|||||||.|++.|||+|++||.+|++.+
T Consensus 12 e~~~~~mT~eEK~~Ls~~I~~Lp~e~L~~Vi~II~~~~p~l~~~~~dEIEiDid~L~~~TL~~L~~yV~~~l~~k 86 (90)
T 2jns_A 12 EDKCKPMSYEEKRQLSLDINKLPGEKLGRVVHIIQSREPSLKNSNPDEIEIDFETLKPSTLRELERYVTSCLRKK 86 (90)
T ss_dssp TSSCCCCCHHHHHHHHHHHTTSCHHHHTTHHHHHHTTCGGGTTSCTTSCCCCTTTSCHHHHHHHHHHHHTTSCCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHhcCccccCCCCCeEEEeccCCCHHHHHHHHHHHHHHHHhh
Confidence 446799999999999999999999999999999999999987 47899999999999999999999999998765
No 42
>3iu6_A Protein polybromo-1; PB1, polybromo 1 isoform 1, BAF180, polybromo0ID, PBRM1, BRG associated factor 180, structural genomics, SGC; HET: OCS; 1.79A {Homo sapiens}
Probab=99.67 E-value=4.7e-16 Score=147.09 Aligned_cols=100 Identities=15% Similarity=0.189 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHcCCC------CCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 006060 369 SKIFKSCSALLEKLMKHKH------GWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFH 442 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~------a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~ 442 (662)
..+...+..|+..++.+++ +.+|.+.++.. |+||. ++||+|.+|++||..|.|.++++|..||.|||.
T Consensus 6 ~~lq~~l~~l~~~v~~~~De~GR~lsd~F~~LPsk~----pdYY~--k~Pi~l~~Ikkri~~~~Y~sld~f~~D~~lmf~ 79 (147)
T 3iu6_A 6 LLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVD----PNFPN--KPPLTFDIIRKNVENNRYRRLDLFQEHMFEVLE 79 (147)
T ss_dssp CHHHHHHHHHHHHHHTCBCTTSCBGGGGGTTCCSSC----TTSTT--SCCCCHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCcchHHHhHCCCCC----ccccC--CCCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 4577788999999999875 78899877654 78998 999999999999999999999999999999999
Q ss_pred hhhhhCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 006060 443 NAMTYNPKGQDVHIMAEQLLKIFEDKWVVIES 474 (662)
Q Consensus 443 Nc~~YN~~gS~V~~~A~~Lek~FE~~~~~i~~ 474 (662)
||+.||.+||.||.+|..|+++|...+.++..
T Consensus 80 NAr~yN~e~S~IyeDAv~Lq~~f~~~r~eL~~ 111 (147)
T 3iu6_A 80 RARRMNRTDSEIYEDAVELQQFFIKIRDELCK 111 (147)
T ss_dssp HHHHHSCTTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999998887654
No 43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=99.61 E-value=6.8e-16 Score=151.07 Aligned_cols=95 Identities=16% Similarity=0.225 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
.++...+..||..|..|+.+|+|+.. .++.||||.||++||+.|.|.++.+|..||+|||+||..||
T Consensus 74 ~el~~~l~~vl~~L~~~~~s~~~~~y-------------~~k~PmDL~~i~kKl~~~~Y~s~~eF~~Dv~lIf~n~~~~~ 140 (183)
T 3lqh_A 74 KELQISLKQVLTALLNSRTTSHLLRY-------------RQQQPLDLEGVKRKMDQGNYTSVLEFSDDIVKIIQAAINSD 140 (183)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHTC-------------CC--CCSHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhccccHhhhhh-------------hhcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhhcc
Confidence 45677789999999999999999762 25999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 449 PKGQDVHIMAEQLLKIFEDKWVVIESEY 476 (662)
Q Consensus 449 ~~gS~V~~~A~~Lek~FE~~~~~i~~~~ 476 (662)
..++.+..++..|+.+|++.+..+-+.+
T Consensus 141 ~~~~e~~~ag~~l~~~f~~~l~~vfpwf 168 (183)
T 3lqh_A 141 GGQPEIKKANSMVKSFFIRQMERVFPWF 168 (183)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTS
T ss_pred CCChhhhhhhhHHHHHHHHHHHHHCCCC
Confidence 9999999999999999999998875443
No 44
>2lm0_A AF4/FMR2 family member 1/protein AF-9 chimera; intrinsically disordered, nuclear protein; NMR {Homo sapiens}
Probab=95.98 E-value=0.023 Score=52.08 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=55.5
Q ss_pred CCCCCHHHHHHHHHHhcCCCh-hcHHHHHHHHHhhcCCCCCCCCeEEEECCCCCHHHHHHHHHHHH
Q 006060 549 KRDMTYDEKQKLSTNLQSLPS-EKLDNIVQIIKKRNSSLFQHDDEIEVDIDSVDAETLWELDRFVT 613 (662)
Q Consensus 549 kR~MT~EEK~kLs~~I~~Lp~-EkL~~VVqIIke~~P~l~~~~dEIEIDIDsLd~~TLreL~ryV~ 613 (662)
...=-.+|.+.|-..|-.|.+ +.|.+||++|.+. +++...+..+.||+.+||..|+++|+.|+.
T Consensus 56 ~~~~y~~~L~~l~~rim~l~d~~~lq~iv~li~~t-G~~~it~~tfDFDLc~LD~~Tv~klq~~l~ 120 (125)
T 2lm0_A 56 CDKAYLDELVELHRRLMTLRERHILQQIVNLIEET-GHFHITNTTFDFDLCSLDKTTVRKLQSYLE 120 (125)
T ss_dssp CSCSTHHHHHHHHHHHHTCCCCSSHHHHHHHHHTS-CCEEECSSCEEECTTTSCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhc-CceeeecccccceeeccCHHHHHHHHHHHH
Confidence 334567899999999999998 5799999999985 566677889999999999999999999874
No 45
>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}
Probab=20.83 E-value=57 Score=27.81 Aligned_cols=19 Identities=37% Similarity=0.688 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHhhh
Q 006060 229 KLEIELDTVRSLVKRIEAK 247 (662)
Q Consensus 229 rl~~EL~~vr~l~~~ie~~ 247 (662)
-|.-||.|||.|++-||.+
T Consensus 8 el~lel~qir~lr~~~elk 26 (99)
T 3aei_A 8 ELQLELQQIRTLRQSLELK 26 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4778999999999999987
No 46
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=20.02 E-value=1.7e+02 Score=28.43 Aligned_cols=43 Identities=14% Similarity=0.201 Sum_probs=35.6
Q ss_pred ccccccCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 201 VVAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKR 243 (662)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~e~~~l~~rl~~EL~~vr~l~~~ 243 (662)
++.|.+.++.|.+.|--++.+-|++|.+..+.+.|+-|.-...
T Consensus 88 glnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRn 130 (185)
T 1wqg_A 88 GVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRN 130 (185)
T ss_dssp CCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556567999999999999999999999999999886554433
No 47
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=20.01 E-value=1.7e+02 Score=28.41 Aligned_cols=43 Identities=16% Similarity=0.264 Sum_probs=35.7
Q ss_pred ccccccCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 201 VVAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKR 243 (662)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~s~~e~~~l~~rl~~EL~~vr~l~~~ 243 (662)
++.|.+.++.|.+.|--++.+-|++|.+..+.+.|+-|.-...
T Consensus 88 glnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRn 130 (185)
T 1ise_A 88 GLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRN 130 (185)
T ss_dssp TCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556567999999999999999999999999999886654433
Done!