Query 006060
Match_columns 662
No_of_seqs 355 out of 1524
Neff 4.9
Searched_HMMs 13730
Date Mon Mar 25 14:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006060.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006060hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3d7ca1 a.29.2.1 (A:731-832) G 99.9 1.9E-27 1.4E-31 209.6 12.4 101 369-471 1-101 (102)
2 d1e6ia_ a.29.2.1 (A:) GCN5 {Ba 99.9 3.3E-27 2.4E-31 211.0 11.2 101 371-473 4-104 (111)
3 d3dwya1 a.29.2.1 (A:1084-1197) 99.9 6.1E-27 4.5E-31 210.2 12.9 108 368-475 4-112 (114)
4 d1eqfa1 a.29.2.1 (A:1359-1497) 99.9 1.6E-26 1.2E-30 214.3 15.1 107 369-477 25-131 (139)
5 d1wuma1 a.29.2.1 (A:715-832) P 99.9 2E-26 1.4E-30 208.2 11.8 103 368-472 11-113 (118)
6 d1eqfa2 a.29.2.1 (A:1498-1625) 99.9 1.2E-25 8.9E-30 205.8 10.4 96 380-477 20-115 (128)
7 d1nu9c1 a.8.6.1 (C:1-145) Stap 20.0 49 0.0036 28.7 4.5 38 210-247 105-142 (145)
8 d1dd5a_ d.67.3.1 (A:) Ribosome 17.7 1.1E+02 0.0077 27.2 6.6 44 202-245 88-131 (184)
9 d1ge9a_ d.67.3.1 (A:) Ribosome 16.4 92 0.0067 27.7 5.8 45 202-246 91-135 (184)
10 d1wqga1 d.67.3.1 (A:2-184) Rib 15.8 1.2E+02 0.0091 26.7 6.5 44 202-245 88-131 (183)
No 1
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=1.9e-27 Score=209.60 Aligned_cols=101 Identities=30% Similarity=0.535 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
.+++..|..||..|++|+.+|||+.||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||.||+.||
T Consensus 1 d~L~~~l~~il~~l~~~~~s~~F~~pv~~~~--~pdY~~~I~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 78 (102)
T d3d7ca1 1 DQLYTTLKNLLAQIKSHPSAWPFMEPVKKSE--APDYYEVIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYN 78 (102)
T ss_dssp HHHHHHHHHHHHHHHHSGGGGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHHHHHHHhCCCCCccCCCCChhh--CcCHHHHcCCccCHHHHHHHhccCccCCHHHHHHHHHHHHHHHHHHC
Confidence 3688999999999999999999999999876 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHH
Q 006060 449 PKGQDVHIMAEQLLKIFEDKWVV 471 (662)
Q Consensus 449 ~~gS~V~~~A~~Lek~FE~~~~~ 471 (662)
+++|.++.+|..|+++|+++|++
T Consensus 79 ~~~s~~~~~A~~l~~~f~~~~ke 101 (102)
T d3d7ca1 79 PPDSEYCRCASALEKFFYFKLKE 101 (102)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998764
No 2
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.94 E-value=3.3e-27 Score=211.02 Aligned_cols=101 Identities=32% Similarity=0.546 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCC
Q 006060 371 IFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPK 450 (662)
Q Consensus 371 l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~ 450 (662)
+.+.|..||..|++|+++|||+.|||+.. +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||++
T Consensus 4 ~~~~l~~il~~l~~~~~a~pF~~pvd~~~--~pdY~~vI~~PmdL~tI~~kl~~~~Y~s~~~f~~Dv~li~~Na~~yN~~ 81 (111)
T d1e6ia_ 4 HDAAIQNILTELQNHAAAWPFLQPVNKEE--VPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGE 81 (111)
T ss_dssp THHHHHHHHHHHHHSTTCGGGSSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHSCT
T ss_pred HHHHHHHHHHHHHhCCCChhhcCCCCchh--CcCHHHHcCCchhHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHCCC
Confidence 46889999999999999999999999887 9999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Q 006060 451 GQDVHIMAEQLLKIFEDKWVVIE 473 (662)
Q Consensus 451 gS~V~~~A~~Lek~FE~~~~~i~ 473 (662)
+|.++.+|..|+++|+++|+.++
T Consensus 82 ~s~i~~~A~~l~~~f~~~~~~ip 104 (111)
T d1e6ia_ 82 NTSYYKYANRLEKFFNNKVKEIP 104 (111)
T ss_dssp TSHHHHHHHHHHHHHHHHHHTSG
T ss_pred CCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999998774
No 3
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=6.1e-27 Score=210.21 Aligned_cols=108 Identities=32% Similarity=0.571 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHHHHHcC-CCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhh
Q 006060 368 GSKIFKSCSALLEKLMKH-KHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMT 446 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~-k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~ 446 (662)
..++.+.|..+|+.|+++ +.+|+|..|||+...++||||++|++||||+||++||.+|.|.++.+|.+||+|||+||+.
T Consensus 4 p~el~~~l~~~l~~l~~~~p~a~pF~~pvd~~~~~~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~ 83 (114)
T d3dwya1 4 PEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWL 83 (114)
T ss_dssp HHHHHHHHHHHHHHHHTCTTTTGGGSSCCCHHHHTCTTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCccCCCCChhhccCCCHHHHcCCCCCHHHHHHHHHcCccccHHHHHHHHHHHHHHHHH
Confidence 467889999999999987 5899999999998777999999999999999999999999999999999999999999999
Q ss_pred hCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 447 YNPKGQDVHIMAEQLLKIFEDKWVVIESE 475 (662)
Q Consensus 447 YN~~gS~V~~~A~~Lek~FE~~~~~i~~~ 475 (662)
||+++|+++.+|..|++.|++.|..+...
T Consensus 84 yN~~~s~~~~~A~~L~~~f~~~~~~i~~~ 112 (114)
T d3dwya1 84 YNRKTSRVYKFCSKLAEVFEQEIDPVMQS 112 (114)
T ss_dssp HSCTTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999887654
No 4
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.94 E-value=1.6e-26 Score=214.31 Aligned_cols=107 Identities=25% Similarity=0.491 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhC
Q 006060 369 SKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYN 448 (662)
Q Consensus 369 ~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN 448 (662)
..+...|..||+.|..++.+|+|..|||+.. +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||
T Consensus 25 ~~l~~~l~~il~~l~~~~~s~pF~~Pvd~~~--~pdY~~iI~~PmdL~tI~~kl~~~~Y~s~~~f~~D~~li~~Na~~yN 102 (139)
T d1eqfa1 25 VTLSSILESIINDMRDLPNTYPFHTPVNAKV--VKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYN 102 (139)
T ss_dssp HHHHHHHHHHHHHHHTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCchhhhCCCChhh--ccCHHHHcCChhhHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHC
Confidence 4577889999999999999999999999987 99999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006060 449 PKGQDVHIMAEQLLKIFEDKWVVIESEYN 477 (662)
Q Consensus 449 ~~gS~V~~~A~~Lek~FE~~~~~i~~~~~ 477 (662)
+++|.++.+|..|+.+|++.|+++..++.
T Consensus 103 ~~~s~i~~~A~~L~~~~~~~~~~~~~~~~ 131 (139)
T d1eqfa1 103 GPKHSLTQISQSMLDLCDEKLKEKEDKLA 131 (139)
T ss_dssp CTTSHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999877654
No 5
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.93 E-value=2e-26 Score=208.17 Aligned_cols=103 Identities=30% Similarity=0.543 Sum_probs=99.1
Q ss_pred chHHHHHHHHHHHHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhh
Q 006060 368 GSKIFKSCSALLEKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTY 447 (662)
Q Consensus 368 ~~~l~k~C~~IL~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~Y 447 (662)
..++...|..||..|++|+.+++|..||++.. +||||++|++||||+||++||.+|.|.++.+|.+||+|||+||+.|
T Consensus 11 ~~~l~~~l~~il~~l~~~~~a~~F~~pv~~~~--~pdY~~iI~~PmdL~~I~~kl~~~~Y~s~~ef~~Dv~li~~Na~~y 88 (118)
T d1wuma1 11 PDQLYSTLKSILQQVKSHQSAWPFMEPVKRTE--APGYYEVIRFPMDLKTMSERLKNRYYVSKKLFMADLQRVFTNCKEY 88 (118)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCHHHHSCCCSSS--SSSCTTTCSSCCCHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcCcccCCCChhh--CcCHHHHcCChhhHHHHHHHhcccccCchHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999887 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 006060 448 NPKGQDVHIMAEQLLKIFEDKWVVI 472 (662)
Q Consensus 448 N~~gS~V~~~A~~Lek~FE~~~~~i 472 (662)
|+++|.++.+|..|+++|++.|+++
T Consensus 89 n~~~s~~~~~A~~l~~~f~~~~~e~ 113 (118)
T d1wuma1 89 NPPESEYYKCANILEKFFFSKIKEA 113 (118)
T ss_dssp SCTTSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999988764
No 6
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.92 E-value=1.2e-25 Score=205.83 Aligned_cols=96 Identities=27% Similarity=0.546 Sum_probs=89.6
Q ss_pred HHHHcCCCCCCCCCcCCccccCCCccccccCCCCChHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhhCCCCCHHHHHHH
Q 006060 380 EKLMKHKHGWVFNAPVDVKNLGLHDYFTIIRHPMDLGTVKTRLNKNWYKSPKEFAEDVRLTFHNAMTYNPKGQDVHIMAE 459 (662)
Q Consensus 380 ~~L~k~k~a~pF~ePVD~~~l~lPDYy~IIK~PMDLsTIkkKL~~g~Y~s~~EF~~DVrLIF~Nc~~YN~~gS~V~~~A~ 459 (662)
..|++++.||||+.|||+.. +||||++|++||||+||++||.+|.|.++.+|..||+|||.||+.||+++|.++.+|.
T Consensus 20 ~~~~~~p~a~pF~~pVd~~~--~PdY~~vIk~PmDL~tI~~kl~~~~Y~s~~ef~~Dv~li~~Na~~yN~~~s~i~~~A~ 97 (128)
T d1eqfa2 20 QKMMAVPDSWPFHHPVNKKF--VPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQ 97 (128)
T ss_dssp HTTTTSTTCGGGTSCCCTTT--STTHHHHCSSCCCHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHcCCCCChhcCCCCccc--CcCHHHHcCCcccHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 45566788999999999887 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 006060 460 QLLKIFEDKWVVIESEYN 477 (662)
Q Consensus 460 ~Lek~FE~~~~~i~~~~~ 477 (662)
.|++.|++.|..+...+.
T Consensus 98 ~L~~~~~~~l~~~~~~~~ 115 (128)
T d1eqfa2 98 EIVNVCYQTLTEYDEHLT 115 (128)
T ss_dssp HHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 999999999998866543
No 7
>d1nu9c1 a.8.6.1 (C:1-145) Staphylocoagulase {Staphylococcus aureus [TaxId: 1280]}
Probab=20.03 E-value=49 Score=28.74 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=34.4
Q ss_pred eEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006060 210 RVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEAK 247 (662)
Q Consensus 210 ~~~~~~~~~s~~e~~~l~~rl~~EL~~vr~l~~~ie~~ 247 (662)
+-.++|..++-.|..+|..+|+.-+|+++.=++.|+++
T Consensus 105 f~~y~v~~LTm~EyN~I~~sLk~Ave~F~kEVk~Iq~k 142 (145)
T d1nu9c1 105 FDQYTIEDLTMREYNELTESLKSAVKDFEKDVEIIENQ 142 (145)
T ss_dssp TTTCCCCCCBHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cccccHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33468899999999999999999999999999999876
No 8
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga maritima [TaxId: 2336]}
Probab=17.70 E-value=1.1e+02 Score=27.22 Aligned_cols=44 Identities=11% Similarity=0.160 Sum_probs=36.4
Q ss_pred cccccCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006060 202 VAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIE 245 (662)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~l~~rl~~EL~~vr~l~~~ie 245 (662)
+.|...+..+.+.+-.+|..-|++|.+.++...|+.|.-...|-
T Consensus 88 lnp~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iR~iR 131 (184)
T d1dd5a_ 88 LNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIR 131 (184)
T ss_dssp CCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCcccceeecccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445688999999999999999999999999998776655553
No 9
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex aeolicus [TaxId: 63363]}
Probab=16.42 E-value=92 Score=27.66 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=36.0
Q ss_pred cccccCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006060 202 VAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIEA 246 (662)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~l~~rl~~EL~~vr~l~~~ie~ 246 (662)
+.|...++.+++.|-.+|..-|++|.+.++...|+.|.-...|-.
T Consensus 91 lnp~~~g~~Iri~iP~lT~E~R~~lvK~ak~~~E~aKv~iRniR~ 135 (184)
T d1ge9a_ 91 LNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRR 135 (184)
T ss_dssp SCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcceeccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 334345889999999999999999999999999987765554443
No 10
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=15.79 E-value=1.2e+02 Score=26.70 Aligned_cols=44 Identities=16% Similarity=0.255 Sum_probs=35.8
Q ss_pred cccccCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006060 202 VAVKSGDGRVKISLGSSTKREMREIRKKLEIELDTVRSLVKRIE 245 (662)
Q Consensus 202 ~~~~~~~~~~~~~~~~~s~~e~~~l~~rl~~EL~~vr~l~~~ie 245 (662)
+.|...+..|.+.+-.+|..-|++|.+.++...|..|.-...|-
T Consensus 88 lnP~~dg~~Irv~iP~lT~E~R~elvK~ak~~~E~aKv~iRniR 131 (183)
T d1wqga1 88 VNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIR 131 (183)
T ss_dssp CCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcCCceeeeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445688999999999999999999999999998666555443
Done!