Query 006061
Match_columns 662
No_of_seqs 125 out of 146
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 14:56:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006061.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006061hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1af7a1 a.58.1.1 (A:11-91) Che 34.8 14 0.001 28.5 3.4 57 46-121 11-67 (81)
2 d1jfia_ a.22.1.3 (A:) Negative 32.3 46 0.0033 24.8 6.0 51 52-103 5-55 (66)
3 d1ku5a_ a.22.1.2 (A:) Archaeal 24.4 45 0.0033 24.7 4.6 44 59-103 11-54 (66)
4 d1htaa_ a.22.1.2 (A:) Archaeal 23.9 38 0.0027 25.2 4.1 52 47-103 4-55 (68)
5 d1ugoa_ a.7.7.1 (A:) BAG-famil 17.8 96 0.007 25.3 5.7 49 80-128 19-69 (99)
6 d1m7ka_ a.7.7.1 (A:) Silencer 17.6 1.6E+02 0.012 23.0 6.9 48 81-128 8-57 (81)
7 d1n1jb_ a.22.1.3 (B:) Nuclear 16.7 1.1E+02 0.0082 23.0 5.6 48 53-101 4-51 (78)
8 d2pjqa1 a.211.1.1 (A:1-215) Un 15.8 42 0.0031 30.2 3.2 97 46-146 84-206 (215)
9 d1dina_ c.69.1.9 (A:) Dienelac 15.0 32 0.0023 30.0 2.0 21 494-517 211-231 (233)
10 d1zaka1 c.37.1.1 (A:3-127,A:15 13.7 1.9E+02 0.014 23.8 6.8 49 179-227 131-186 (189)
No 1
>d1af7a1 a.58.1.1 (A:11-91) Chemotaxis receptor methyltransferase CheR, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=34.75 E-value=14 Score=28.49 Aligned_cols=57 Identities=23% Similarity=0.306 Sum_probs=43.2
Q ss_pred hcCHHHHHHHHHhhhcccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccchHHHHHHHhhcC
Q 006061 46 SLSDKQIARLRAEILNSVGIKKLVSEDDEFIASLICAEMIENLAHVAKSVARLGKKCNDQGLKSFEIALDEFVNIG 121 (662)
Q Consensus 46 SLSD~eI~rLR~eil~SeGV~~LVS~D~~~LL~LA~AEkle~L~~~A~sVaRLG~rC~DP~l~~Fd~~f~~l~~~~ 121 (662)
.|||++..++++-|-.--|+. .++.-..++ ..||.+|+..-.+.+|+.||+-|..+.
T Consensus 11 ~lsd~~f~~~~~~i~~~~Gi~--l~~~K~~~l-----------------~~RL~~rm~~~g~~s~~~Y~~~L~~~~ 67 (81)
T d1af7a1 11 ALSDAHFRRICQLIYQRAGIV--LADHKRDMV-----------------YNRLVRRLRALGLDDFGRYLSMLEANQ 67 (81)
T ss_dssp CCCHHHHHHHHHHHHHHHCCC--CCGGGHHHH-----------------HHHHHHHHHHHTCCCHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHHhCCC--CchhhHHHH-----------------HHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 389999999999999999998 344444444 246666666666889999999998643
No 2
>d1jfia_ a.22.1.3 (A:) Negative cofactor 2, NC2, alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=32.29 E-value=46 Score=24.76 Aligned_cols=51 Identities=20% Similarity=0.112 Sum_probs=39.5
Q ss_pred HHHHHHhhhcccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006061 52 IARLRAEILNSVGIKKLVSEDDEFIASLICAEMIENLAHVAKSVARLGKKCN 103 (662)
Q Consensus 52 I~rLR~eil~SeGV~~LVS~D~~~LL~LA~AEkle~L~~~A~sVaRLG~rC~ 103 (662)
++|.|. ||++..=-..||.|--+++.-|+-..+.+|-..|..+++-.+|..
T Consensus 5 ~srVkk-imk~~~~~~~is~~A~~~~~~a~E~Fi~~l~~~A~~~a~~~krkt 55 (66)
T d1jfia_ 5 PARIKK-IMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKT 55 (66)
T ss_dssp HHHHHH-HHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---C
T ss_pred hHHHHH-HHhcCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 345555 566554456899999999999999999999999999999877654
No 3
>d1ku5a_ a.22.1.2 (A:) Archaeal histone {Archaeon (Pyrococcus horikoshii) [TaxId: 53953]}
Probab=24.42 E-value=45 Score=24.70 Aligned_cols=44 Identities=20% Similarity=0.201 Sum_probs=38.2
Q ss_pred hhcccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006061 59 ILNSVGIKKLVSEDDEFIASLICAEMIENLAHVAKSVARLGKKCN 103 (662)
Q Consensus 59 il~SeGV~~LVS~D~~~LL~LA~AEkle~L~~~A~sVaRLG~rC~ 103 (662)
|++..|+. -||.|--+++.-||-+.++.|..-|..++.-++|..
T Consensus 11 I~k~~~~~-ris~ea~~~l~~a~e~Fi~~l~~~a~~~a~~~~RKT 54 (66)
T d1ku5a_ 11 LIRKAGAE-RVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKT 54 (66)
T ss_dssp HHHHTTCS-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSE
T ss_pred HHHhCccc-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 55666775 489999999999999999999999999998887754
No 4
>d1htaa_ a.22.1.2 (A:) Archaeal histone {Archaeon Methanothermus fervidus, histone A [TaxId: 2180]}
Probab=23.92 E-value=38 Score=25.20 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=43.1
Q ss_pred cCHHHHHHHHHhhhcccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcccC
Q 006061 47 LSDKQIARLRAEILNSVGIKKLVSEDDEFIASLICAEMIENLAHVAKSVARLGKKCN 103 (662)
Q Consensus 47 LSD~eI~rLR~eil~SeGV~~LVS~D~~~LL~LA~AEkle~L~~~A~sVaRLG~rC~ 103 (662)
|.-..|.| |+++.|+.+ ||+|--+++.=++-+.+.+|..-|..+++=++|..
T Consensus 4 LP~a~I~r----i~k~~~~~r-is~ea~~~l~~~~e~fi~~l~~~a~~~a~~~kRkT 55 (68)
T d1htaa_ 4 LPIAPIGR----IIKNAGAER-VSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKT 55 (68)
T ss_dssp SCHHHHHH----HHHHTTCSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred CcHHHHHH----HHHHCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34445555 456678877 89999999999999999999999999999888875
No 5
>d1ugoa_ a.7.7.1 (A:) BAG-family molecular chaperone regulator-5, BAG-5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.83 E-value=96 Score=25.28 Aligned_cols=49 Identities=16% Similarity=0.136 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccccchHHHHHHH--hhcCCCCCCcc
Q 006061 80 ICAEMIENLAHVAKSVARLGKKCNDQGLKSFEIALDEF--VNIGADPYGWE 128 (662)
Q Consensus 80 A~AEkle~L~~~A~sVaRLG~rC~DP~l~~Fd~~f~~l--~~~~~d~~~~~ 128 (662)
+..+..++++.+...|..|..+|.|..+..++.....+ .-.++|+.|..
T Consensus 19 ~I~~i~~ev~~L~~~V~~f~~~~~dke~~~L~E~L~~~LlkLD~Ie~~G~~ 69 (99)
T d1ugoa_ 19 RLQEIQREVKAIEPQVVGFSGLSDDKNYKRLERILTKQLFEIDSVDTEGKG 69 (99)
T ss_dssp HHHHHHHHHHHSHHHHHTCCCCTTSSHHHHHHHHHHHHHHHHHHSCCSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 45677888889999999999999998777776655543 23456665553
No 6
>d1m7ka_ a.7.7.1 (A:) Silencer of death domains, Sodd (Bag4) {Human (Homo sapiens) [TaxId: 9606]}
Probab=17.62 E-value=1.6e+02 Score=22.99 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCccccchHHHHHHH--hhcCCCCCCcc
Q 006061 81 CAEMIENLAHVAKSVARLGKKCNDQGLKSFEIALDEF--VNIGADPYGWE 128 (662)
Q Consensus 81 ~AEkle~L~~~A~sVaRLG~rC~DP~l~~Fd~~f~~l--~~~~~d~~~~~ 128 (662)
..+..++++.+...|..|+.++.|..+..++...... .-.++|+.|..
T Consensus 8 I~~i~~~v~~l~~~V~~f~g~~~dke~~~L~E~L~~~llkLD~Ie~~G~~ 57 (81)
T d1m7ka_ 8 IIHVLEKVQYLEQEVEEFVGKKTDKAYWLLEEMLTKELLELDSVETGGQD 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHHHTTCCCSSCH
T ss_pred HHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhCCcccCCcH
Confidence 4567788888999999999999998887777766653 44677877753
No 7
>d1n1jb_ a.22.1.3 (B:) Nuclear transcription factor Y subunit gamma (Nf-Yc2) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.71 E-value=1.1e+02 Score=22.98 Aligned_cols=48 Identities=19% Similarity=0.166 Sum_probs=38.3
Q ss_pred HHHHHhhhcccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 006061 53 ARLRAEILNSVGIKKLVSEDDEFIASLICAEMIENLAHVAKSVARLGKK 101 (662)
Q Consensus 53 ~rLR~eil~SeGV~~LVS~D~~~LL~LA~AEkle~L~~~A~sVaRLG~r 101 (662)
+|.|. |+++..=-..+|.|--+++.-|+-+.++.|..-|..+++-++|
T Consensus 4 srVkr-ImK~~~~~~~is~ea~~~i~~a~E~Fi~~l~~~A~~~a~~~~r 51 (78)
T d1n1jb_ 4 ARIKK-IMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKR 51 (78)
T ss_dssp HHHHH-HHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHhcCCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34443 4554444578899999999999999999999999999987664
No 8
>d2pjqa1 a.211.1.1 (A:1-215) Uncharacterized protein LP2664 {Lactobacillus plantarum [TaxId: 1590]}
Probab=15.82 E-value=42 Score=30.22 Aligned_cols=97 Identities=10% Similarity=0.212 Sum_probs=57.4
Q ss_pred hcCHHHHHHHHHhhhcccccccccc-----cChHHHHHHHHHHHHHHHHH--HHHHHHHhh---cccCCcccc-------
Q 006061 46 SLSDKQIARLRAEILNSVGIKKLVS-----EDDEFIASLICAEMIENLAH--VAKSVARLG---KKCNDQGLK------- 108 (662)
Q Consensus 46 SLSD~eI~rLR~eil~SeGV~~LVS-----~D~~~LL~LA~AEkle~L~~--~A~sVaRLG---~rC~DP~l~------- 108 (662)
.++++.+..... ++......+-.+ +-+..+ +-=||++|.|-. +|+..+--| +.=-||...
T Consensus 84 ~~~~~~i~~I~~-iI~~~s~s~~~~~~~p~t~Ea~I--v~DADrLDalGaiGIaR~f~y~g~~g~~~~~p~~~~~~~~~~ 160 (215)
T d2pjqa1 84 NVTADDQTAIFA-IIDHMSFSKSFNGPQKLSLEGQV--VQDADRLDAIGAIGIARALYYSGHVGEKIYDPAIAPREHMTR 160 (215)
T ss_dssp TCCHHHHHHHHH-HHTSCCTGGGGGCCCCCCSHHHH--HHHHHHHTTSHHHHHHHHHHHHHHHTCCSCCTTSCCCSSCCH
T ss_pred CCCHHHHHHHHH-HHHhHHHHhccCCCCCcCHHHHH--HHHHHHHHhccchhHHHHHHHHHHhCCcccCcccccccccch
Confidence 567777776655 333333222221 223333 457899999887 566666443 333455432
Q ss_pred ---------chHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHH
Q 006061 109 ---------SFEIALDEFVNIGADPYGWEFSWKKMEKKVKKMERFIS 146 (662)
Q Consensus 109 ---------~Fd~~f~~l~~~~~d~~~~~~~~k~me~kvkKMerlV~ 146 (662)
.++|+|.+|..-. |.-.-+...+.++++.+-|+.|++
T Consensus 161 ~~~~~~~~~~i~Hf~eKLl~l~-~~m~T~~gk~lA~~R~~~m~~Fl~ 206 (215)
T d2pjqa1 161 EQYRHQPGTAINHFYEKLFKLA-ALMNTDTAKALAAHRTAVMHEFVD 206 (215)
T ss_dssp HHHHHSCCCTTHHHHHTGGGHH-HHCCSHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCccHHHHHHHHHHHHH-HHCCCHHHHHHHHHHHHHHHHHHH
Confidence 5889999886421 222224556778999999998876
No 9
>d1dina_ c.69.1.9 (A:) Dienelactone hydrolase {Pseudomonas sp., B13 [TaxId: 306]}
Probab=14.99 E-value=32 Score=29.96 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=15.3
Q ss_pred ccccchHHHHHHHHHHHHhhhhhh
Q 006061 494 VYDTGLAGEWTAAMTAILEWLAPL 517 (662)
Q Consensus 494 v~D~~LA~eWk~am~kILeWLaPl 517 (662)
.||...+. ++++++|+|||||
T Consensus 211 ~y~~~aa~---~a~~r~~~ffa~~ 231 (233)
T d1dina_ 211 GYVASAAA---LANERTLDFLAPL 231 (233)
T ss_dssp TCCHHHHH---HHHHHHHHHHGGG
T ss_pred cCCHHHHH---HHHHHHHHHHHcC
Confidence 35555443 5678999999998
No 10
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}
Probab=13.71 E-value=1.9e+02 Score=23.84 Aligned_cols=49 Identities=10% Similarity=0.114 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHhhhhhc--cccc-----cccHHHHHHHHHHHHHHHHHHHHHhh
Q 006061 179 IEFQKKVAWKEQEVKNLRE--VSLW-----NKTYDYTILLLARSLFTLFGRIRHVF 227 (662)
Q Consensus 179 ~~lqqkv~~QRqeVk~LKe--~SLW-----nrTyD~vV~lLARsV~tI~~RI~~VF 227 (662)
..+++++...+++++.|.+ ...+ +++.|+|.+.+-.++-.|+.+...++
T Consensus 131 e~~~~rl~~y~~~~~~l~~~y~~~~~~Id~~~~idev~~~I~~~l~~il~~~~~~~ 186 (189)
T d1zaka1 131 EKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELLGSILEKKNEMV 186 (189)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHHHHhhhhhhhc
Confidence 3556677777777666644 2455 68999999999999999988887765
Done!