BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006062
(662 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LL45|TBP1_ORYSJ Telomere-binding protein 1 OS=Oryza sativa subsp. japonica GN=TBP1
PE=1 SV=2
Length = 633
Score = 66.6 bits (161), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 52/88 (59%), Gaps = 11/88 (12%)
Query: 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK-ASL 599
+R+ R +T++EV LVE V G GRW ++K AF + +RT VDLKDKW+ L+ AS+
Sbjct: 530 QRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI 589
Query: 600 AQTPPDSRMGARKHASSVPIPMPVLLRV 627
A P R GA P+P +L RV
Sbjct: 590 A---PQQRRGA-------PVPQELLDRV 607
>sp|Q9M347|TRP6_ARATH Telomere repeat-binding protein 6 OS=Arabidopsis thaliana GN=TRP6
PE=1 SV=1
Length = 400
Score = 63.9 bits (154), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 9/88 (10%)
Query: 540 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 599
V+R+ R +T+SEV LV+ V + G GRW ++K AF ++RT VDLKDKW+ L+
Sbjct: 310 VQRRIRRPFTVSEVEALVQAVERLGTGRWRDVKSHAFNHVNHRTYVDLKDKWKTLVHT-- 367
Query: 600 AQTPPDSRMGARKHASSVPIPMPVLLRV 627
+++ AR+ P+P +L RV
Sbjct: 368 ------AKISARQRRGE-PVPQDLLDRV 388
>sp|Q9SNB9|TRP2_ARATH Telomere repeat-binding protein 2 OS=Arabidopsis thaliana GN=TRP2
PE=1 SV=1
Length = 553
Score = 63.9 bits (154), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 539 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 598
+R+ R ++++EV LV+ V K G GRW ++K AF +RT VDLKDKW+ L+
Sbjct: 447 AAQRRIRRPFSVTEVEALVQAVEKLGTGRWRDVKVRAFEDADHRTYVDLKDKWKTLVHT- 505
Query: 599 LAQTPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQ 636
A+ P R G P+P +L RV + SQ
Sbjct: 506 -ARISPQQRRGE-------PVPQELLDRVLKAHAYWSQ 535
>sp|Q6R0E3|TRP5_ARATH Telomere repeat-binding protein 5 OS=Arabidopsis thaliana GN=TRP5
PE=1 SV=2
Length = 630
Score = 63.2 bits (152), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 50/88 (56%), Gaps = 9/88 (10%)
Query: 540 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 599
+R+ R ++++EV LV+ V + G GRW ++K AF + +RT VDLKDKW+ L+
Sbjct: 523 AQRRIRRPFSVAEVEALVQAVERLGTGRWRDVKLRAFDNAKHRTYVDLKDKWKTLVHT-- 580
Query: 600 AQTPPDSRMGARKHASSVPIPMPVLLRV 627
A+ P R G P+P +L RV
Sbjct: 581 ARISPQQRRGE-------PVPQELLDRV 601
>sp|Q9FFY9|TRP4_ARATH Telomere repeat-binding protein 4 OS=Arabidopsis thaliana GN=TRP4
PE=1 SV=1
Length = 640
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 600
+R+ R ++++EV LV V + G GRW ++K +F + S+RT VDLKDKW+ L+ A
Sbjct: 531 QRRTRRPFSVTEVEALVSAVEEVGTGRWRDVKLRSFENASHRTYVDLKDKWKTLVHT--A 588
Query: 601 QTPPDSRMGARKHASSVPIPMPVLLRV 627
P R G P+P +L RV
Sbjct: 589 SISPQQRRGE-------PVPQELLDRV 608
>sp|Q9C7B1|TRP3_ARATH Telomere repeat-binding protein 3 OS=Arabidopsis thaliana GN=TRP3
PE=1 SV=1
Length = 619
Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 9/96 (9%)
Query: 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 600
+R+ R ++++EV LV+ V + G GRW ++K AF +RT VDLKDKW+ L+ A
Sbjct: 505 QRRTRRPFSVTEVEALVQAVEELGTGRWRDVKLRAFEDADHRTYVDLKDKWKTLVHT--A 562
Query: 601 QTPPDSRMGARKHASSVPIPMPVLLRVRELAEMQSQ 636
P R G P+P +L RV SQ
Sbjct: 563 SISPQQRRGE-------PVPQELLDRVLRAYGYWSQ 591
>sp|Q8L7L8|TRP1_ARATH Telomere repeat-binding protein 1 OS=Arabidopsis thaliana GN=TRP1
PE=1 SV=2
Length = 578
Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 9/80 (11%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSR 607
++++EV LV+ V K G GRW ++K AF +RT VDLKDKW+ L+ A+ P R
Sbjct: 471 FSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT--AKISPQQR 528
Query: 608 MGARKHASSVPIPMPVLLRV 627
G P+P +L RV
Sbjct: 529 RGE-------PVPQELLNRV 541
>sp|P54274|TERF1_HUMAN Telomeric repeat-binding factor 1 OS=Homo sapiens GN=TERF1 PE=1
SV=3
Length = 439
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 599
R + +AW E L GV KYG G WS+I L ++ RTSV LKD+WR + K L
Sbjct: 376 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLHYKFNNRTSVMLKDRWRTMKKLKL 432
>sp|O55036|TERF1_CRIGR Telomeric repeat-binding factor 1 (Fragment) OS=Cricetulus griseus
GN=TERF1 PE=2 SV=1
Length = 438
Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
Query: 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 599
R + +AW E L GV KYG G WS+I L ++ RTSV LKD+WR + K L
Sbjct: 376 RARKRQAWLWEEDKNLRSGVRKYGEGNWSKI--LLHYKFNNRTSVMLKDRWRTMKKLKL 432
>sp|F4I7L1|TRB4_ARATH Telomere repeat-binding factor 4 OS=Arabidopsis thaliana
GN=At1g17520 PE=2 SV=2
Length = 296
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 31/50 (62%), Gaps = 4/50 (8%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKR---LAFASYSYRTSVDLKDKWRNL 594
WT E L+ GV K+G G+W I R LA S R+++DLKDKWRNL
Sbjct: 8 WTAEEEEALLAGVRKHGPGKWKNILRDPELA-EQLSSRSNIDLKDKWRNL 56
>sp|F4IEY4|TRB5_ARATH Telomere repeat-binding factor 5 OS=Arabidopsis thaliana
GN=At1g72740 PE=2 SV=1
Length = 287
Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKR-LAFA-SYSYRTSVDLKDKWRNL 594
WT E L+ G+ K+G G+W I R FA +R+++DLKDKWRNL
Sbjct: 8 WTAEEEEALLAGIRKHGPGKWKNILRDPEFADQLIHRSNIDLKDKWRNL 56
>sp|P70371|TERF1_MOUSE Telomeric repeat-binding factor 1 OS=Mus musculus GN=Terf1 PE=1
SV=1
Length = 421
Score = 47.0 bits (110), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 537 KGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596
K G R++ W ++K GV KYG G W++I L+ ++ RTSV LKD+WR + +
Sbjct: 361 KSGRRKRQTWLWEEDRILKC--GVKKYGEGNWAKI--LSHYKFNNRTSVMLKDRWRTMKR 416
Query: 597 ASL 599
L
Sbjct: 417 LKL 419
>sp|Q9PU53|TERF2_CHICK Telomeric repeat-binding factor 2 OS=Gallus gallus GN=TERF2 PE=1
SV=2
Length = 718
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEI-KRLAFASYSYRTSVDLKDKWRNLLKASLA 600
WT+ E + +GV KYG GRW I ++ F + RTSV +KD++R + K +A
Sbjct: 668 WTVQESEWIKDGVRKYGEGRWKTISEKYPFQN---RTSVQIKDRYRTMKKLGIA 718
>sp|Q8VWK4|TRB1_ARATH Telomere repeat-binding factor 1 OS=Arabidopsis thaliana GN=TRB1
PE=1 SV=1
Length = 300
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEI-KRLAFASYSY-RTSVDLKDKWRNL 594
WT E L GV K+G G+W I K F+ Y R++VDLKDKWRN+
Sbjct: 8 WTQEEESALKSGVIKHGPGKWRTILKDPEFSGVLYLRSNVDLKDKWRNM 56
>sp|O35144|TERF2_MOUSE Telomeric repeat-binding factor 2 OS=Mus musculus GN=Terf2 PE=1
SV=3
Length = 541
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSY--RTSVDLKDKWRNLLKASL 599
WT+ E + +GV KYG G W+ I + SY + RT+V +KD+WR + K +
Sbjct: 491 WTIEESEWVKDGVRKYGEGNWAAISK----SYPFVNRTAVMIKDRWRTMKKLGM 540
>sp|Q9FJW5|TRB2_ARATH Telomere repeat-binding factor 2 OS=Arabidopsis thaliana GN=TRB2
PE=1 SV=1
Length = 299
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 17/75 (22%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSY----RTSVDLKDKWRNL--------- 594
WT E L GV K+G G+W I L+ +S R++VDLKDKWRN+
Sbjct: 8 WTPEEEAALKAGVLKHGTGKWRTI--LSDTEFSLILKSRSNVDLKDKWRNISVTALWGSR 65
Query: 595 --LKASLAQTPPDSR 607
K +L +TPP ++
Sbjct: 66 KKAKLALKRTPPGTK 80
>sp|Q9M2X3|TRB3_ARATH Telomere repeat-binding factor 3 OS=Arabidopsis thaliana GN=TRB3
PE=1 SV=1
Length = 295
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSY----RTSVDLKDKWRNLLKASLAQTP 603
WT E L GV K+G G+W I L+ YS R++VDLKDKWRN+ +L
Sbjct: 8 WTPEEETALKAGVLKHGTGKWRTI--LSDPVYSTILKSRSNVDLKDKWRNISVTAL---- 61
Query: 604 PDSRMGARKHA 614
G+RK A
Sbjct: 62 ----WGSRKKA 68
>sp|Q15554|TERF2_HUMAN Telomeric repeat-binding factor 2 OS=Homo sapiens GN=TERF2 PE=1
SV=2
Length = 500
Score = 41.6 bits (96), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSY--RTSVDLKDKWRNL 594
WT+ E + GV KYG G W+ I + +Y + RT+V +KD+WR +
Sbjct: 450 WTVEESEWVKAGVQKYGEGNWAAISK----NYPFVNRTAVMIKDRWRTM 494
>sp|Q10274|MU152_SCHPO Meiotically up-regulated gene 152 protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mug152 PE=1 SV=1
Length = 390
Score = 37.4 bits (85), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 542 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 601
RK WT E L+ G +G G W +I ++ R+ DLKD++R +L +
Sbjct: 52 RKPRVKWTEKETNDLLRGCQIHGVGNWKKILLDERFHFTNRSPNDLKDRFRTILPEDYKK 111
Query: 602 TPPDSR 607
P+++
Sbjct: 112 FYPNAK 117
Score = 33.1 bits (74), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 542 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 600
RK + +T E +L+EG +G W+ I + A R S DL+D++RN A
Sbjct: 137 RKERKQFTPEEDERLLEGFFLHGPC-WTRISKDANLGLQNRRSTDLRDRFRNAFPERYA 194
>sp|B0G0Y5|MYBAA_DICDI Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1
Length = 971
Score = 37.0 bits (84), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 547 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 601
AWTL E +++ SKYG +W+EI +L RT+ +K+ W + +K L++
Sbjct: 811 AWTLEEDRIILDAHSKYG-NKWAEISKLLPG----RTNCAIKNHWNSTMKRKLSK 860
>sp|Q132J9|DCUP_RHOPS Uroporphyrinogen decarboxylase OS=Rhodopseudomonas palustris
(strain BisB5) GN=hemE PE=3 SV=1
Length = 348
Score = 37.0 bits (84), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 95 PKLE--SSEGLSNSENAEADAGKLNTHLESIEEMLTKAKQEESHLLACGSPDHSSTYVLV 152
P+L+ +S L + N D GKL E++ + ++ E + + CG+P +TY++
Sbjct: 98 PRLDPLNSPDLVGTLNGAIDLGKLEPVFEALRIVRSELAPETTLIGFCGAPFTVATYMVA 157
Query: 153 DGQCSDQH 160
SDQH
Sbjct: 158 GQGTSDQH 165
>sp|P01104|MYB_AVIMB Transforming protein Myb OS=Avian myeloblastosis virus GN=V-MYB
PE=1 SV=2
Length = 382
Score = 36.2 bits (82), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQT 602
WT E +++E V KYG RWS+I + R +++W N L + +T
Sbjct: 24 WTKEEDQRVIEHVQKYGPKRWSDIAK----HLKGRIGKQCRERWHNHLNPEVKKT 74
>sp|Q6E434|TRF1_SCHPO Telomeric DNA-binding factor trf1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=trf1 PE=1 SV=1
Length = 485
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
Query: 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFAS------YSYRTSVDLKDKWRNL 594
R + R+WT E L++G+ RWS+I L YR V LKDK RN+
Sbjct: 401 RVANRRSWTKEEEEALLDGLDLVKGPRWSQILELYGPGGKKSEVLKYRNQVQLKDKARNM 460
>sp|P22035|BAS1_YEAST Myb-like DNA-binding protein BAS1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=BAS1 PE=1 SV=1
Length = 811
Score = 35.0 bits (79), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 546 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 595
R WTL E + L+ V YG +W +I + +R S+ +++WR ++
Sbjct: 170 REWTLEEDLNLISKVKAYGT-KWRKIS----SEMEFRPSLTCRNRWRKII 214
>sp|Q55GK3|MYBM_DICDI Myb-like protein M OS=Dictyostelium discoideum GN=mybM PE=3 SV=1
Length = 669
Score = 33.9 bits (76), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 8/81 (9%)
Query: 527 DDNPATVR----AVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYR 582
DD P+ + ++ G+RR ++ WT E KL + VS YG +W KR++ +
Sbjct: 46 DDVPSPSKRGRGQIQNGIRRSPNK-WTEEEDQKLFQLVSIYGEKKW---KRISAEMGGQK 101
Query: 583 TSVDLKDKWRNLLKASLAQTP 603
T W+ +L + + P
Sbjct: 102 TGAQCAQHWKRVLSPDIRKGP 122
>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1
Length = 641
Score = 33.9 bits (76), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQT 602
WT E +++E V KYG RWS I + R +++W N L + +T
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKT 145
>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2
Length = 636
Score = 33.5 bits (75), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQT 602
WT E +++E V KYG RWS I + R +++W N L + +T
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKT 145
>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1
Length = 640
Score = 33.5 bits (75), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQT 602
WT E +++E V KYG RWS I + R +++W N L + +T
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKT 145
>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2
Length = 640
Score = 33.5 bits (75), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQT 602
WT E +++E V KYG RWS I + R +++W N L + +T
Sbjct: 95 WTKEEDQRVIELVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKT 145
>sp|Q58277|AMTAB_METJA Probable threonylcarbamoyladenosine tRNA methylthiotransferase
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0867
PE=3 SV=1
Length = 427
Score = 33.1 bits (74), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/97 (22%), Positives = 47/97 (48%), Gaps = 5/97 (5%)
Query: 377 KEHGGKSIASVKNLGLGLMSSRSNTRPVRIASSNRITLRLDSLGGSGVQIPYVSRVRRSR 436
K+HG + + +++ + ++ NT VR+ + NR+ R++ L G ++ + ++
Sbjct: 36 KKHGFEVVNNLEEADIAII----NTCVVRLETENRMIYRINELKNLGKEVVVAGCLPKAL 91
Query: 437 PRKNVKALMEFHPNGIGMAAKLVKEAVDVHSSEPNRE 473
K VK + +P A +++K V+ H P E
Sbjct: 92 KNK-VKGFLHIYPREAHKAGEILKNYVEKHYRMPYIE 127
>sp|P32657|CHD1_YEAST Chromo domain-containing protein 1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=CHD1 PE=1 SV=1
Length = 1468
Score = 32.7 bits (73), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAF 576
WT E KL+ GV KYG G W++I+ F
Sbjct: 1175 WTKEEDEKLLIGVFKYGYGSWTQIRDDPF 1203
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 244,062,206
Number of Sequences: 539616
Number of extensions: 10357416
Number of successful extensions: 23575
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 64
Number of HSP's that attempted gapping in prelim test: 23423
Number of HSP's gapped (non-prelim): 172
length of query: 662
length of database: 191,569,459
effective HSP length: 124
effective length of query: 538
effective length of database: 124,657,075
effective search space: 67065506350
effective search space used: 67065506350
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 65 (29.6 bits)