Query 006062
Match_columns 662
No_of_seqs 167 out of 416
Neff 3.3
Searched_HMMs 46136
Date Thu Mar 28 17:48:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006062.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006062hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00249 Myb_DNA-binding: Myb- 99.0 2.8E-10 6.2E-15 87.7 3.7 48 545-595 1-48 (48)
2 PLN03212 Transcription repress 98.8 6.2E-09 1.3E-13 106.1 6.2 63 540-605 20-82 (249)
3 smart00717 SANT SANT SWI3, AD 98.7 1.7E-08 3.7E-13 74.1 5.2 48 545-596 1-48 (49)
4 PF13921 Myb_DNA-bind_6: Myb-l 98.7 2.6E-08 5.7E-13 79.2 5.1 53 548-605 1-53 (60)
5 PLN03091 hypothetical protein; 98.6 3.3E-08 7.1E-13 107.4 5.8 63 540-605 9-71 (459)
6 cd00167 SANT 'SWI3, ADA2, N-Co 98.6 6.7E-08 1.4E-12 70.2 4.9 45 547-595 1-45 (45)
7 KOG0048 Transcription factor, 98.3 9.3E-07 2E-11 88.7 5.1 58 545-605 9-66 (238)
8 PLN03212 Transcription repress 97.9 8.5E-06 1.8E-10 83.6 4.8 51 545-600 78-128 (249)
9 PLN03091 hypothetical protein; 97.8 2.1E-05 4.5E-10 86.1 5.0 49 545-598 67-115 (459)
10 TIGR01557 myb_SHAQKYF myb-like 97.3 0.00058 1.3E-08 56.1 5.8 47 543-592 1-51 (57)
11 KOG0457 Histone acetyltransfer 97.3 0.00038 8.2E-09 76.2 5.8 67 547-625 74-141 (438)
12 PF13837 Myb_DNA-bind_4: Myb/S 97.0 0.0004 8.7E-09 58.5 2.6 53 545-597 1-66 (90)
13 KOG0049 Transcription factor, 96.9 0.00083 1.8E-08 76.7 4.6 58 544-605 359-416 (939)
14 KOG0048 Transcription factor, 96.9 0.0011 2.4E-08 66.8 4.7 51 545-600 62-112 (238)
15 KOG0051 RNA polymerase I termi 96.6 0.0033 7.2E-08 71.6 6.1 76 544-636 383-462 (607)
16 KOG0049 Transcription factor, 95.7 0.0059 1.3E-07 70.1 2.6 53 540-596 407-459 (939)
17 PF13873 Myb_DNA-bind_5: Myb/S 95.4 0.019 4.2E-07 48.0 4.1 52 545-596 2-70 (78)
18 PF09111 SLIDE: SLIDE; InterP 94.9 0.022 4.8E-07 53.1 3.3 53 545-597 49-112 (118)
19 COG5114 Histone acetyltransfer 94.8 0.043 9.2E-07 59.1 5.5 70 547-628 65-136 (432)
20 PF13325 MCRS_N: N-terminal re 94.5 0.035 7.6E-07 56.1 3.7 58 544-601 72-132 (199)
21 KOG0050 mRNA splicing protein 93.4 0.065 1.4E-06 60.6 3.6 57 546-606 8-64 (617)
22 KOG4282 Transcription factor G 91.8 0.24 5.2E-06 52.3 5.2 81 545-632 54-143 (345)
23 KOG1279 Chromatin remodeling f 91.7 0.2 4.4E-06 56.7 4.7 48 543-595 251-298 (506)
24 PLN03142 Probable chromatin-re 90.5 0.33 7.1E-06 59.1 5.1 53 545-597 926-986 (1033)
25 COG5147 REB1 Myb superfamily p 90.2 0.3 6.5E-06 55.4 4.2 75 544-637 19-93 (512)
26 COG5259 RSC8 RSC chromatin rem 89.6 0.32 6.9E-06 54.7 3.7 47 544-595 278-324 (531)
27 COG5147 REB1 Myb superfamily p 89.3 0.24 5.3E-06 56.2 2.6 49 545-599 291-339 (512)
28 KOG0051 RNA polymerase I termi 83.9 1.1 2.4E-05 51.9 4.1 59 543-605 434-518 (607)
29 PF08914 Myb_DNA-bind_2: Rap1 80.2 2.8 6E-05 35.7 4.2 50 545-597 2-59 (65)
30 PF08074 CHDCT2: CHDCT2 (NUC03 76.3 1.8 3.9E-05 43.2 2.3 48 544-591 2-58 (173)
31 PF12776 Myb_DNA-bind_3: Myb/S 74.5 5.3 0.00011 34.2 4.4 50 547-596 1-63 (96)
32 PF11149 DUF2924: Protein of u 73.4 2.5 5.3E-05 40.9 2.4 39 233-271 7-45 (136)
33 KOG2656 DNA methyltransferase 68.4 3.9 8.5E-05 45.6 2.8 54 546-600 131-190 (445)
34 COG5118 BDP1 Transcription ini 67.4 7.7 0.00017 43.4 4.7 60 529-596 352-411 (507)
35 PF04504 DUF573: Protein of un 63.2 12 0.00025 34.0 4.3 54 544-597 3-64 (98)
36 KOG0384 Chromodomain-helicase 62.0 5.8 0.00013 49.5 2.9 53 544-596 1132-1192(1373)
37 KOG0050 mRNA splicing protein 43.7 19 0.00041 41.7 3.0 46 545-596 59-104 (617)
38 TIGR01624 LRP1_Cterm LRP1 C-te 36.5 29 0.00062 28.9 2.2 17 30-46 3-19 (50)
39 KOG4468 Polycomb-group transcr 27.8 1.3E+02 0.0028 36.0 6.3 26 545-571 88-113 (782)
40 PF09420 Nop16: Ribosome bioge 25.8 1.4E+02 0.003 29.1 5.3 52 543-595 112-163 (164)
41 KOG4329 DNA-binding protein [G 23.2 1.8E+02 0.0038 33.1 6.0 44 545-592 277-320 (445)
42 PRK13923 putative spore coat p 23.1 49 0.0011 33.3 1.7 50 545-596 5-57 (170)
43 cd01187 INT_SG4 INT_SG4, DNA b 21.3 1.6E+02 0.0035 29.4 5.0 83 543-630 97-186 (299)
No 1
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=99.00 E-value=2.8e-10 Score=87.74 Aligned_cols=48 Identities=35% Similarity=0.610 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 595 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 595 (662)
|.+||.+|++.|++||.+||.++|..|..... .+||..+|+++|++++
T Consensus 1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~---~~Rt~~qc~~~~~~~~ 48 (48)
T PF00249_consen 1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMP---GGRTAKQCRSRYQNLL 48 (48)
T ss_dssp S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHS---SSSTHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcC---CCCCHHHHHHHHHhhC
Confidence 57899999999999999999989999995322 4999999999999974
No 2
>PLN03212 Transcription repressor MYB5; Provisional
Probab=98.80 E-value=6.2e-09 Score=106.08 Aligned_cols=63 Identities=25% Similarity=0.391 Sum_probs=55.1
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 540 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 540 k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
|..-+|.+||+||++.|++.|++||.++|+.|.... -.+||..+|++||.|.+++.+.++||-
T Consensus 20 K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~---g~gRT~KQCReRW~N~L~P~I~kgpWT 82 (249)
T PLN03212 20 KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRA---GLLRCGKSCRLRWMNYLRPSVKRGGIT 82 (249)
T ss_pred cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhh---hcCCCcchHHHHHHHhhchhcccCCCC
Confidence 344457899999999999999999999999998431 158999999999999999999999995
No 3
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=98.73 E-value=1.7e-08 Score=74.08 Aligned_cols=48 Identities=38% Similarity=0.694 Sum_probs=43.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
+.+||.+|++.|+.++.+||.++|..|.. .+++||..+|+++|+++++
T Consensus 1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~----~~~~rt~~~~~~~~~~~~~ 48 (49)
T smart00717 1 KGEWTEEEDELLIELVKKYGKNNWEKIAK----ELPGRTAEQCRERWNNLLK 48 (49)
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HcCCCCHHHHHHHHHHHcC
Confidence 46899999999999999999779999984 3569999999999999875
No 4
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=98.68 E-value=2.6e-08 Score=79.18 Aligned_cols=53 Identities=34% Similarity=0.648 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 548 WTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 548 WT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
||.+|++.|+.+|.+||. +|+.|.. .|++||..+|++||++.+++.+..+||.
T Consensus 1 WT~eEd~~L~~~~~~~g~-~W~~Ia~----~l~~Rt~~~~~~r~~~~l~~~~~~~~wt 53 (60)
T PF13921_consen 1 WTKEEDELLLELVKKYGN-DWKKIAE----HLGNRTPKQCRNRWRNHLRPKISRGPWT 53 (60)
T ss_dssp S-HHHHHHHHHHHHHHTS--HHHHHH----HSTTS-HHHHHHHHHHTTSTTSTSSSSS
T ss_pred CCHHHHHHHHHHHHHHCc-CHHHHHH----HHCcCCHHHHHHHHHHHCcccccCCCcC
Confidence 999999999999999996 9999984 3557999999999999777777667775
No 5
>PLN03091 hypothetical protein; Provisional
Probab=98.63 E-value=3.3e-08 Score=107.38 Aligned_cols=63 Identities=25% Similarity=0.464 Sum_probs=55.3
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 540 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 540 k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
|++.++++||.||++.|++.|++||.++|+.|.+.. -.+||+.+|++||.|.+.+.+.++||-
T Consensus 9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~---g~gRT~KQCRERW~NyLdP~IkKgpWT 71 (459)
T PLN03091 9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQA---GLQRCGKSCRLRWINYLRPDLKRGTFS 71 (459)
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhh---ccCcCcchHhHHHHhccCCcccCCCCC
Confidence 345556789999999999999999999999998531 158999999999999999999999995
No 6
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=98.60 E-value=6.7e-08 Score=70.20 Aligned_cols=45 Identities=40% Similarity=0.777 Sum_probs=40.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006062 547 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 595 (662)
Q Consensus 547 pWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 595 (662)
+||.+|++.|+.++.+||.++|..|.. .++.||..+|+++|.+++
T Consensus 1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~----~~~~rs~~~~~~~~~~~~ 45 (45)
T cd00167 1 PWTEEEDELLLEAVKKYGKNNWEKIAK----ELPGRTPKQCRERWRNLL 45 (45)
T ss_pred CCCHHHHHHHHHHHHHHCcCCHHHHHh----HcCCCCHHHHHHHHHHhC
Confidence 599999999999999999889999984 356799999999999874
No 7
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=98.26 E-value=9.3e-07 Score=88.68 Aligned_cols=58 Identities=19% Similarity=0.374 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
+.|||+|||+.|++-|++||.|+|..|.+... + .|++..|+-||.|.+++.+.+++|-
T Consensus 9 kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~g--l-~R~GKSCRlRW~NyLrP~ikrg~fT 66 (238)
T KOG0048|consen 9 KGPWTQEEDLTQIRSIKSFGKHNGTALPKLAG--L-RRCGKSCRLRWTNYLRPDLKRGNFS 66 (238)
T ss_pred CCCCChHHHHHHHHHHHHhCCCCcchhhhhcC--C-CccchHHHHHhhcccCCCccCCCCC
Confidence 58999999999999999999999999986432 1 9999999999999999999988774
No 8
>PLN03212 Transcription repressor MYB5; Provisional
Probab=97.94 E-value=8.5e-06 Score=83.61 Aligned_cols=51 Identities=25% Similarity=0.337 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 600 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~ 600 (662)
+.+||.||++.|++.+.+||. +|+.|.. .|++||..++|.+|.++++..+.
T Consensus 78 kgpWT~EED~lLlel~~~~Gn-KWs~IAk----~LpGRTDnqIKNRWns~LrK~l~ 128 (249)
T PLN03212 78 RGGITSDEEDLILRLHRLLGN-RWSLIAG----RIPGRTDNEIKNYWNTHLRKKLL 128 (249)
T ss_pred cCCCChHHHHHHHHHHHhccc-cHHHHHh----hcCCCCHHHHHHHHHHHHhHHHH
Confidence 569999999999999999997 9999984 46899999999999998876543
No 9
>PLN03091 hypothetical protein; Provisional
Probab=97.80 E-value=2.1e-05 Score=86.11 Aligned_cols=49 Identities=27% Similarity=0.461 Sum_probs=44.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 598 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas 598 (662)
+.+||.||++.|++.+++||. +|+.|.. .|++||..+||.||..++|..
T Consensus 67 KgpWT~EED~lLLeL~k~~Gn-KWskIAk----~LPGRTDnqIKNRWnslLKKk 115 (459)
T PLN03091 67 RGTFSQQEENLIIELHAVLGN-RWSQIAA----QLPGRTDNEIKNLWNSCLKKK 115 (459)
T ss_pred CCCCCHHHHHHHHHHHHHhCc-chHHHHH----hcCCCCHHHHHHHHHHHHHHH
Confidence 568999999999999999998 9999984 468999999999999988754
No 10
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=97.28 E-value=0.00058 Score=56.15 Aligned_cols=47 Identities=21% Similarity=0.337 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCch---hhhhhhhcccCCCC-ChhhHHHHHH
Q 006062 543 KHHRAWTLSEVMKLVEGVSKYGAGRW---SEIKRLAFASYSYR-TSVDLKDKWR 592 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVekyG~G~W---~~Ik~~~f~~f~~R-T~VDLKDKWR 592 (662)
|+|..||+||-..+++||+.||.|+| +.|+.... ..| |..+++-...
T Consensus 1 k~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~---~~~lT~~qV~SH~Q 51 (57)
T TIGR01557 1 KPRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMV---VDGLTRDQVASHLQ 51 (57)
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcC---CCCCCHHHHHHHHH
Confidence 56889999999999999999999999 99985322 245 8888885443
No 11
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.26 E-value=0.00038 Score=76.23 Aligned_cols=67 Identities=21% Similarity=0.388 Sum_probs=52.7
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc-cccCCCCCCccccccccCCCCCCChHHHH
Q 006062 547 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK-ASLAQTPPDSRMGARKHASSVPIPMPVLL 625 (662)
Q Consensus 547 pWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK-as~~q~p~~~~~~~Rk~~~~~piP~~lL~ 625 (662)
-||.+|+-.|++|++.||.|||.+|++ ....||.-+||+.|.+..- ..+.+-||-. -.+++|+..++
T Consensus 74 ~WtadEEilLLea~~t~G~GNW~dIA~----hIGtKtkeeck~hy~k~fv~s~~~~~~~i~--------~~~~~~q~e~~ 141 (438)
T KOG0457|consen 74 SWTADEEILLLEAAETYGFGNWQDIAD----HIGTKTKEECKEHYLKHFVNSPIFPLPDIS--------LGIGVNQDEDA 141 (438)
T ss_pred CCChHHHHHHHHHHHHhCCCcHHHHHH----HHcccchHHHHHHHHHHHhcCccccccccc--------cccCcchHHHh
Confidence 599999999999999999999999995 3458999999999998874 5555555431 35566665544
No 12
>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A.
Probab=97.03 E-value=0.0004 Score=58.53 Aligned_cols=53 Identities=30% Similarity=0.460 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHh------hCC-----C--chhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSK------YGA-----G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVek------yG~-----G--~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
|..||.+|+.+|+..+.. |+. + -|..|...-...=-.||+.+|++||.||.+.
T Consensus 1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~ 66 (90)
T PF13837_consen 1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK 66 (90)
T ss_dssp --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999887 221 1 5999986322211379999999999999973
No 13
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.93 E-value=0.00083 Score=76.66 Aligned_cols=58 Identities=28% Similarity=0.505 Sum_probs=52.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
++.+||.+|+..|+.+|++||.--|.+|. ..|++|+..||++||-|.+..+...+-|.
T Consensus 359 khg~wt~~ED~~L~~AV~~Yg~kdw~k~R----~~vPnRSdsQcR~RY~nvL~~s~K~~rW~ 416 (939)
T KOG0049|consen 359 KHGRWTDQEDVLLVCAVSRYGAKDWAKVR----QAVPNRSDSQCRERYTNVLNRSAKVERWT 416 (939)
T ss_pred cCCCCCCHHHHHHHHHHHHhCccchhhHH----HhcCCccHHHHHHHHHHHHHHhhccCcee
Confidence 36789999999999999999999999998 35789999999999999998887777774
No 14
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]
Probab=96.88 E-value=0.0011 Score=66.83 Aligned_cols=51 Identities=25% Similarity=0.388 Sum_probs=45.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 600 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~ 600 (662)
|..||.||++.|+++-..||. +|+.|++ .|++||.-++|.-|..-+|..+.
T Consensus 62 rg~fT~eEe~~Ii~lH~~~GN-rWs~IA~----~LPGRTDNeIKN~Wnt~lkkkl~ 112 (238)
T KOG0048|consen 62 RGNFSDEEEDLIIKLHALLGN-RWSLIAG----RLPGRTDNEVKNHWNTHLKKKLL 112 (238)
T ss_pred CCCCCHHHHHHHHHHHHHHCc-HHHHHHh----hCCCcCHHHHHHHHHHHHHHHHH
Confidence 779999999999999999999 8999984 58999999999999888765443
No 15
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=96.58 E-value=0.0033 Score=71.61 Aligned_cols=76 Identities=26% Similarity=0.398 Sum_probs=58.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcccc--CCCCCCccccccccCCCCCCCh
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL--AQTPPDSRMGARKHASSVPIPM 621 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~--~q~p~~~~~~~Rk~~~~~piP~ 621 (662)
.|..||++|++.|..-|.++|. .|+.|.+. -+|.+.+|+|+||+.++.+- ..++|-. .--.
T Consensus 383 ~rg~wt~ee~eeL~~l~~~~g~-~W~~Ig~~-----lgr~P~~crd~wr~~~~~g~~~~r~~Ws~-----------eEe~ 445 (607)
T KOG0051|consen 383 KRGKWTPEEEEELKKLVVEHGN-DWKEIGKA-----LGRMPMDCRDRWRQYVKCGSKRNRGAWSI-----------EEEE 445 (607)
T ss_pred ccCCCCcchHHHHHHHHHHhcc-cHHHHHHH-----HccCcHHHHHHHHHhhccccccccCcchH-----------HHHH
Confidence 4678999999999999999998 99999853 48999999999999999875 4456632 1233
Q ss_pred HHHHHHHHHHh--hcCC
Q 006062 622 PVLLRVRELAE--MQSQ 636 (662)
Q Consensus 622 ~lL~RVreLA~--~~~~ 636 (662)
-||.-|-++-. +|||
T Consensus 446 ~Llk~V~~~~~~~~q~q 462 (607)
T KOG0051|consen 446 KLLKTVNEMIREALQPQ 462 (607)
T ss_pred HHHHHHHHHHHHhhccc
Confidence 45566655544 6675
No 16
>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]
Probab=95.72 E-value=0.0059 Score=70.08 Aligned_cols=53 Identities=28% Similarity=0.475 Sum_probs=44.1
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 540 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 540 k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
.++-+.-.||..|++.|+..|++||.|+|..|+ ..+++||..++..+-+.++.
T Consensus 407 ~~s~K~~rW~l~edeqL~~~V~~YG~g~WakcA----~~Lp~~t~~q~~rrR~R~~~ 459 (939)
T KOG0049|consen 407 NRSAKVERWTLVEDEQLLYAVKVYGKGNWAKCA----MLLPKKTSRQLRRRRLRLIA 459 (939)
T ss_pred HHhhccCceeecchHHHHHHHHHHccchHHHHH----HHccccchhHHHHHHHHHHH
Confidence 345556789999999999999999999999998 34689999888777766664
No 17
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain
Probab=95.45 E-value=0.019 Score=47.96 Aligned_cols=52 Identities=33% Similarity=0.350 Sum_probs=42.2
Q ss_pred CCCCCHHHHHHHHHHHHhh-----CC-----------CchhhhhhhhcccC-CCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKY-----GA-----------GRWSEIKRLAFASY-SYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVeky-----G~-----------G~W~~Ik~~~f~~f-~~RT~VDLKDKWRNLlK 596 (662)
...||.+|.+.|++-|++| |. .-|..|....-... ..||..+||.+|.||..
T Consensus 2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~ 70 (78)
T PF13873_consen 2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKS 70 (78)
T ss_pred CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 4579999999999999998 31 47999986543333 48999999999999975
No 18
>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices. It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.
Probab=94.94 E-value=0.022 Score=53.07 Aligned_cols=53 Identities=28% Similarity=0.481 Sum_probs=42.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---Cchhhhhhhh-------ccc-CCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLA-------FAS-YSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~---G~W~~Ik~~~-------f~~-f~~RT~VDLKDKWRNLlKa 597 (662)
.+.||.+|+..|+..+.+||. |.|..|+..- |+- |..||+.+|..|-.+|++.
T Consensus 49 ~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (118)
T PF09111_consen 49 KKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKL 112 (118)
T ss_dssp -SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHH
Confidence 678999999999999999999 9999998631 222 2799999999999999874
No 19
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=94.83 E-value=0.043 Score=59.14 Aligned_cols=70 Identities=20% Similarity=0.459 Sum_probs=52.2
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc-cccCCCCCCccccccccCCCCCCCh-HHH
Q 006062 547 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK-ASLAQTPPDSRMGARKHASSVPIPM-PVL 624 (662)
Q Consensus 547 pWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK-as~~q~p~~~~~~~Rk~~~~~piP~-~lL 624 (662)
.|+..|+-.|++|.+.+|.|+|.+|.+. ...|+.-++|+.|-.+.- ...++-|.-. -..++|+ ++|
T Consensus 65 ~WgadEEllli~~~~TlGlGNW~dIady----iGsr~kee~k~HylK~y~es~~ypl~~i~--------~~~~v~q~~f~ 132 (432)
T COG5114 65 GWGADEELLLIECLDTLGLGNWEDIADY----IGSRAKEEIKSHYLKMYDESKYYPLPDIT--------QNIHVPQDEFL 132 (432)
T ss_pred CcCchHHHHHHHHHHhcCCCcHHHHHHH----HhhhhhHHHHHHHHHHHhhcccccccccc--------cCCCCchHHHH
Confidence 5999999999999999999999999952 358999999999987764 3444334321 2456777 445
Q ss_pred HHHH
Q 006062 625 LRVR 628 (662)
Q Consensus 625 ~RVr 628 (662)
++-|
T Consensus 133 ~qrr 136 (432)
T COG5114 133 EQRR 136 (432)
T ss_pred HHHH
Confidence 4444
No 20
>PF13325 MCRS_N: N-terminal region of micro-spherule protein
Probab=94.51 E-value=0.035 Score=56.09 Aligned_cols=58 Identities=19% Similarity=0.215 Sum_probs=49.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCchhhhhhhhcccC-CCCChhhHHHHHHHhhccccCC
Q 006062 544 HHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASY-SYRTSVDLKDKWRNLLKASLAQ 601 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG--~G~W~~Ik~~~f~~f-~~RT~VDLKDKWRNLlKas~~q 601 (662)
.+-+||.+|++.|..+..... ...+.+|+..+...| ..||+.+|.+.|+.|.++...+
T Consensus 72 ~kalfS~~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy~LL~ 132 (199)
T PF13325_consen 72 SKALFSKEEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQYHLLP 132 (199)
T ss_pred ccCCCCHHHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHhchhh
Confidence 467999999999999877764 568999998888778 7799999999999988877764
No 21
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=93.42 E-value=0.065 Score=60.58 Aligned_cols=57 Identities=28% Similarity=0.510 Sum_probs=50.5
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCc
Q 006062 546 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 606 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~~ 606 (662)
.-|+-.|++.|..+|.+||...|+.|... ++..|..+|+-+|-..+-+++.+..|.+
T Consensus 8 gvwrntEdeilkaav~kyg~nqws~i~sl----l~~kt~rqC~~rw~e~ldp~i~~tews~ 64 (617)
T KOG0050|consen 8 GVWRNTEDEVLKAAVMKYGKNQWSRIASL----LNRKTARQCKARWEEWLDPAIKKTEWSR 64 (617)
T ss_pred ceecccHHHHHHHHHHHcchHHHHHHHHH----HhhcchhHHHHHHHHHhCHHHhhhhhhh
Confidence 46999999999999999999999999843 5678999999999999988888877753
No 22
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]
Probab=91.85 E-value=0.24 Score=52.29 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=54.0
Q ss_pred CCCCCHHHHHHHHHHHHhh----CCCc-----hhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCC
Q 006062 545 HRAWTLSEVMKLVEGVSKY----GAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHAS 615 (662)
Q Consensus 545 RRpWT~EEveaLv~GVeky----G~G~-----W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~~~~~~Rk~~~ 615 (662)
...|+.+|+.+|++...+. ..|+ |..|.......=-.||+.+||.||.||.|..-. ... ++...
T Consensus 54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Yk~--~k~-----~~~~~ 126 (345)
T KOG4282|consen 54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKYKK--EKA-----KKEGS 126 (345)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH--Hhc-----ccCCC
Confidence 6899999999999987643 4465 999987332223579999999999999974221 101 11001
Q ss_pred CCCCChHHHHHHHHHHh
Q 006062 616 SVPIPMPVLLRVRELAE 632 (662)
Q Consensus 616 ~~piP~~lL~RVreLA~ 632 (662)
...-+..+..++-.|.-
T Consensus 127 ~~~s~~~ff~~le~~~~ 143 (345)
T KOG4282|consen 127 GEGSSWKFFSELEALLI 143 (345)
T ss_pred CCCccchHHHHHHHHHh
Confidence 23456677777666664
No 23
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]
Probab=91.74 E-value=0.2 Score=56.71 Aligned_cols=48 Identities=21% Similarity=0.425 Sum_probs=42.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006062 543 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 595 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 595 (662)
..+..||.+|.-.|++||++||. .|..|.. +...||.-||=.|+..|=
T Consensus 251 ~~~~~WT~qE~lLLLE~ie~y~d-dW~kVa~----hVg~ks~eqCI~kFL~LP 298 (506)
T KOG1279|consen 251 SARPNWTEQETLLLLEAIEMYGD-DWNKVAD----HVGTKSQEQCILKFLRLP 298 (506)
T ss_pred cCCCCccHHHHHHHHHHHHHhcc-cHHHHHh----ccCCCCHHHHHHHHHhcC
Confidence 44678999999999999999999 9999983 456999999999998873
No 24
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=90.46 E-value=0.33 Score=59.08 Aligned_cols=53 Identities=23% Similarity=0.326 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhh-------hccc-CCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRL-------AFAS-YSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~-------~f~~-f~~RT~VDLKDKWRNLlKa 597 (662)
.+.||.+|+..|+..+.+||.|+|..|+.. -|+. |..||+.+|+.|-.+|++.
T Consensus 926 ~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~~~ 986 (1033)
T PLN03142 926 GKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLIRL 986 (1033)
T ss_pred CCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHHHH
Confidence 567999999999999999999999999753 1232 3799999999999999874
No 25
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=90.16 E-value=0.3 Score=55.43 Aligned_cols=75 Identities=19% Similarity=0.252 Sum_probs=58.1
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCCCChHH
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPV 623 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~~~~~~Rk~~~~~piP~~l 623 (662)
....|+..|++.|..+|++||.-+|+.|.. .|..||+-|++-+|-|.+.+.+.+..|. .+.
T Consensus 19 k~gsw~~~EDe~l~~~vk~l~~nnws~vas----~~~~~~~kq~~~rw~~~lnp~lk~~~~~---------------~ee 79 (512)
T COG5147 19 KGGSWKRTEDEDLKALVKKLGPNNWSKVAS----LLISSTGKQSSNRWNNHLNPQLKKKNWS---------------EEE 79 (512)
T ss_pred cCCCCCCcchhHHHHHHhhcccccHHHHHH----Hhcccccccccchhhhhhchhccccccc---------------HHH
Confidence 345999999999999999999999999984 3556999999999988777766554443 445
Q ss_pred HHHHHHHHhhcCCC
Q 006062 624 LLRVRELAEMQSQF 637 (662)
Q Consensus 624 L~RVreLA~~~~~~ 637 (662)
..++.+|++.++.-
T Consensus 80 d~~li~l~~~~~~~ 93 (512)
T COG5147 80 DEQLIDLDKELGTQ 93 (512)
T ss_pred HHHHHHHHHhcCch
Confidence 55667777655543
No 26
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=89.56 E-value=0.32 Score=54.73 Aligned_cols=47 Identities=23% Similarity=0.543 Sum_probs=41.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 595 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 595 (662)
.-.+||.+|.-.|++||++||. .|..|++ +..++|--||=-|+-+|=
T Consensus 278 ~dk~WS~qE~~LLLEGIe~ygD-dW~kVA~----HVgtKt~EqCIl~FL~LP 324 (531)
T COG5259 278 RDKNWSRQELLLLLEGIEMYGD-DWDKVAR----HVGTKTKEQCILHFLQLP 324 (531)
T ss_pred ccccccHHHHHHHHHHHHHhhh-hHHHHHH----HhCCCCHHHHHHHHHcCC
Confidence 3568999999999999999999 9999984 467999999999887763
No 27
>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
Probab=89.26 E-value=0.24 Score=56.16 Aligned_cols=49 Identities=33% Similarity=0.589 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 599 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~ 599 (662)
+..||.+|+..|..-+.++|. .|+.|... .+|-+.+|.|+||+.++.+.
T Consensus 291 ~~~wt~e~~~eL~~~~~~~~~-~w~~ig~~-----~~rmp~~crd~wr~~~~~g~ 339 (512)
T COG5147 291 RGKWTKEEEQELAKLVVEHGG-SWTEIGKL-----LGRMPNDCRDRWRDYVKCGD 339 (512)
T ss_pred hccCccccccccccccccccc-hhhHhhhh-----hccCcHHHHHHHhhhccccC
Confidence 567999999999999999998 99999842 47999999999999999763
No 28
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]
Probab=83.94 E-value=1.1 Score=51.91 Aligned_cols=59 Identities=20% Similarity=0.443 Sum_probs=46.9
Q ss_pred CCCCCCCHHHHHHHHHHHH-------hh------------------CCCchhhhhhhhcccCCCCChhhHHHHHHHhhc-
Q 006062 543 KHHRAWTLSEVMKLVEGVS-------KY------------------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK- 596 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVe-------ky------------------G~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK- 596 (662)
+.|.+||.||++.|++.|+ .| -.-+|..|.. .+..|+.++|+-||-.|+.
T Consensus 434 ~~r~~Ws~eEe~~Llk~V~~~~~~~~q~q~~n~~~~~q~sp~s~~~d~I~Wt~vse----~~~TR~~~qCr~Kw~kl~~~ 509 (607)
T KOG0051|consen 434 RNRGAWSIEEEEKLLKTVNEMIREALQPQASNTDTGLQESPESTLKDDINWTLVSE----MLGTRSRIQCRYKWYKLTTS 509 (607)
T ss_pred cccCcchHHHHHHHHHHHHHHHHHhhcccccccchhhhcCccccccCCcchhhhhH----hhcCCCcchHHHHHHHHHhh
Confidence 5688999999999999996 44 1238999984 5679999999999999996
Q ss_pred cccCCCCCC
Q 006062 597 ASLAQTPPD 605 (662)
Q Consensus 597 as~~q~p~~ 605 (662)
+.+.+.++.
T Consensus 510 ~s~n~~~~~ 518 (607)
T KOG0051|consen 510 PSFNKRQES 518 (607)
T ss_pred HHhhccccc
Confidence 555544443
No 29
>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif. The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.
Probab=80.21 E-value=2.8 Score=35.66 Aligned_cols=50 Identities=18% Similarity=0.306 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCC------C--chhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGA------G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~------G--~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
|.+||.+|+.+|++-|.++.. | -|+++.... ...+|---++|+|+.-++.
T Consensus 2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~---~t~HtwQSwR~Ry~K~L~~ 59 (65)
T PF08914_consen 2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKH---PTRHTWQSWRDRYLKHLRG 59 (65)
T ss_dssp -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS----SSS--SHHHHHHHHHHT--
T ss_pred CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhc
Confidence 679999999999999965532 3 366665322 2489999999999776654
No 30
>PF08074 CHDCT2: CHDCT2 (NUC038) domain; InterPro: IPR012957 The CHDCT2 C-terminal domain is found in PHD/RING fingers and chromo domain-associated CHD-like helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=76.31 E-value=1.8 Score=43.24 Aligned_cols=48 Identities=29% Similarity=0.610 Sum_probs=35.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhh-cccC--CCCC------hhhHHHHH
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLA-FASY--SYRT------SVDLKDKW 591 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~-f~~f--~~RT------~VDLKDKW 591 (662)
...-|-..-+=.|+.||-.||.|+|.+|.++. |.++ +-++ ..+.|.|+
T Consensus 2 ~~~iw~r~hdywll~gi~~hgy~rwqdi~nd~~f~IiNEPFk~e~~kgnfle~KNkF 58 (173)
T PF08074_consen 2 EYEIWHRRHDYWLLAGIVKHGYGRWQDIQNDPRFAIINEPFKTESQKGNFLEMKNKF 58 (173)
T ss_pred hhhhhhhhhhHHHHhHHhhccchhHHHHhcCCceeeecccccccccccchHHHHHHH
Confidence 34568888888999999999999999999754 2222 2232 35888776
No 31
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains.
Probab=74.46 E-value=5.3 Score=34.19 Aligned_cols=50 Identities=26% Similarity=0.389 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhh-------CCC-----chhhhhhhhcccC-CCCChhhHHHHHHHhhc
Q 006062 547 AWTLSEVMKLVEGVSKY-------GAG-----RWSEIKRLAFASY-SYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 547 pWT~EEveaLv~GVeky-------G~G-----~W~~Ik~~~f~~f-~~RT~VDLKDKWRNLlK 596 (662)
.||+++++.|++.+... +.| .|..|.......+ ..-|..+||.||+.|.+
T Consensus 1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~~~lk~ 63 (96)
T PF12776_consen 1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKWKTLKK 63 (96)
T ss_pred CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHHHHHHH
Confidence 59999999999988654 222 4777775443333 46688999999998876
No 32
>PF11149 DUF2924: Protein of unknown function (DUF2924); InterPro: IPR021322 This entry is represented by Bacteriophage WO, Gp30. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This bacterial family of proteins has no known function.
Probab=73.42 E-value=2.5 Score=40.92 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=36.4
Q ss_pred ccccccHHHHHHHhhhccCcccccchhhHHHHHhhcccc
Q 006062 233 CLDNLSIKELHETFKATFGRETTVKDKQWLKRRIAMGLT 271 (662)
Q Consensus 233 ~LDnLsIrELhE~FratFGReTtVKDK~WLKRrIsmGL~ 271 (662)
-|..|++.||.+.++..||.++---.++||.+||+.-++
T Consensus 7 ~L~~l~~~eL~~~W~~~fg~~pp~~~r~~L~~rlAyriQ 45 (136)
T PF11149_consen 7 ALPDLPMPELRARWRRLFGSPPPHHNRDFLERRLAYRIQ 45 (136)
T ss_pred hcccCCHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Confidence 488999999999999999999999999999999988765
No 33
>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]
Probab=68.37 E-value=3.9 Score=45.58 Aligned_cols=54 Identities=30% Similarity=0.437 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhc-ccC-CCCChhhHHHHH----HHhhccccC
Q 006062 546 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASY-SYRTSVDLKDKW----RNLLKASLA 600 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~G~W~~Ik~~~f-~~f-~~RT~VDLKDKW----RNLlKas~~ 600 (662)
..||.+|.+.|.+-.++|-. +|--|.+.|- ..| .+||--|||||| |+|+++.-.
T Consensus 131 n~WskeETD~LF~lck~fDL-Rf~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~ 190 (445)
T KOG2656|consen 131 NSWSKEETDYLFDLCKRFDL-RFFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAP 190 (445)
T ss_pred ccccHHHHHHHHHHHHhcCe-eEEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCC
Confidence 56999999999999999999 9999987652 235 459999999999 555665543
No 34
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=67.41 E-value=7.7 Score=43.37 Aligned_cols=60 Identities=22% Similarity=0.325 Sum_probs=48.6
Q ss_pred CCceecccCCCCcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 529 NPATVRAVKGGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 529 ~~v~vp~~k~~k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
++|+..+- .+++..-+||.+|.+.+.+++..+|+ .++.|.. .|++|...++|-||.+--|
T Consensus 352 r~vts~t~---g~~~~~~~Ws~~e~ekFYKALs~wGt-dF~LIs~----lfP~R~RkqIKaKfi~Eek 411 (507)
T COG5118 352 RIVTSSTF---GKKKGALRWSKKEIEKFYKALSIWGT-DFSLISS----LFPNRERKQIKAKFIKEEK 411 (507)
T ss_pred heeecccc---cCCCCCCcccHHHHHHHHHHHHHhcc-hHHHHHH----hcCchhHHHHHHHHHHHhh
Confidence 45555442 34566789999999999999999999 8999984 4689999999999987655
No 35
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins.
Probab=63.15 E-value=12 Score=33.99 Aligned_cols=54 Identities=20% Similarity=0.348 Sum_probs=37.9
Q ss_pred CCCCCCHHHHHHHHHHHHhh----CCCchhhhhhhh---cccC-CCCChhhHHHHHHHhhcc
Q 006062 544 HHRAWTLSEVMKLVEGVSKY----GAGRWSEIKRLA---FASY-SYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVeky----G~G~W~~Ik~~~---f~~f-~~RT~VDLKDKWRNLlKa 597 (662)
-.|-||.+++-.|++|+-.| |.....++...+ ...+ .+=|..||.||-|.|.+.
T Consensus 3 ~qR~WS~eDEi~iL~gl~~~~~~~G~~p~~d~~~f~~~vk~~l~~~~s~~Ql~~KirrLK~K 64 (98)
T PF04504_consen 3 FQRLWSEEDEIVILQGLIDFRAKTGKSPQPDMNAFYDFVKGSLSFDVSKNQLYDKIRRLKKK 64 (98)
T ss_pred CcCCCCchHHHHHHHHHHHHHHhcCCCCCccHHHHHHHHHHHccCCCCHHHHHHHHHHHHHH
Confidence 46789999999999999888 765444433211 1222 234778999999999864
No 36
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=62.00 E-value=5.8 Score=49.50 Aligned_cols=53 Identities=21% Similarity=0.297 Sum_probs=40.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCC--------CCChhhHHHHHHHhhc
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS--------YRTSVDLKDKWRNLLK 596 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~--------~RT~VDLKDKWRNLlK 596 (662)
.---|..+++..|+-||-+||.|+|..|+.+..--|. .=+++.|.-|-.-|++
T Consensus 1132 ~~~~W~~e~Ds~LLiGI~khGygswe~Ir~Dp~L~l~dKi~~~e~~P~a~~L~~R~~yLls 1192 (1373)
T KOG0384|consen 1132 WDCDWGSEDDSMLLIGIFKHGYGSWEAIRLDPDLGLTDKIFLVETVPQAKHLQRRADYLLS 1192 (1373)
T ss_pred cccCCCchhhhhHhhhhhhcccccHHHhccCccccchhhhcccccCCchHHHHHHHHHHHH
Confidence 4557999999999999999999999999976442222 3346777777666654
No 37
>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=43.71 E-value=19 Score=41.74 Aligned_cols=46 Identities=24% Similarity=0.375 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
+--|+.||++.|+....-+-. .|..|+. +-+||+-+|-.+|-+|+-
T Consensus 59 ~tews~eederlLhlakl~p~-qwrtIa~-----i~gr~~~qc~eRy~~ll~ 104 (617)
T KOG0050|consen 59 KTEWSREEDERLLHLAKLEPT-QWRTIAD-----IMGRTSQQCLERYNNLLD 104 (617)
T ss_pred hhhhhhhHHHHHHHHHHhcCC-ccchHHH-----HhhhhHHHHHHHHHHHHH
Confidence 456999999999999888887 9999984 358999999999999984
No 38
>TIGR01624 LRP1_Cterm LRP1 C-terminal domain. This model represents a tightly conserved small domain found in LRP1 and related plant proteins. This family also contains a well-conserved putative zinc finger domain (TIGR01623). The rest of the sequence of most members consists of highly divergent, low-complexity sequence.
Probab=36.53 E-value=29 Score=28.86 Aligned_cols=17 Identities=41% Similarity=0.640 Sum_probs=14.6
Q ss_pred CCCCCCceEEEEEEEcC
Q 006062 30 PNLGADPVVYKLVRVDG 46 (662)
Q Consensus 30 ~~~i~dpvvyklvRV~g 46 (662)
|-+++-|.|++||||.+
T Consensus 3 P~ev~s~AvFrcvRvs~ 19 (50)
T TIGR01624 3 PGEVSAPAVFKCVRVTA 19 (50)
T ss_pred ccccccceEEEEEEEec
Confidence 56889999999999953
No 39
>KOG4468 consensus Polycomb-group transcriptional regulator [Transcription]
Probab=27.81 E-value=1.3e+02 Score=35.95 Aligned_cols=26 Identities=19% Similarity=0.500 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhh
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEI 571 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~I 571 (662)
++.||-.|++++.+|++.||. .+..|
T Consensus 88 ktaWt~~E~~~Ffdal~~~GK-dFe~V 113 (782)
T KOG4468|consen 88 KTAWTHQEEESFFDALRQVGK-DFEKV 113 (782)
T ss_pred ccccchhhHHHHHHHHHHhcc-cHHHH
Confidence 779999999999999999998 67666
No 40
>PF09420 Nop16: Ribosome biogenesis protein Nop16; InterPro: IPR019002 Nucleolar protein 16 (Nop16) is a protein involved in the biogenesis of the 60S ribosomal subunit.
Probab=25.80 E-value=1.4e+02 Score=29.14 Aligned_cols=52 Identities=21% Similarity=0.201 Sum_probs=40.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006062 543 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 595 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 595 (662)
+..++-|..|.+.+..-|++||. .+.....+---..--.|.-+|+.+.+...
T Consensus 112 ~~~~~ls~~e~~~i~~Li~KhGd-Dy~aMarD~KLN~~Q~T~~qlrrki~~~k 163 (164)
T PF09420_consen 112 KKPRRLSEREIEYIEYLIEKHGD-DYKAMARDRKLNYMQHTPGQLRRKIRKYK 163 (164)
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-cHHHHhccCCCCcccCCHHHHHHHHHHhc
Confidence 56788999999999999999996 77766654332334689999998887653
No 41
>KOG4329 consensus DNA-binding protein [General function prediction only]
Probab=23.17 E-value=1.8e+02 Score=33.09 Aligned_cols=44 Identities=20% Similarity=0.389 Sum_probs=34.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHH
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWR 592 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWR 592 (662)
---||.+|-.++-+|++.||. .+-.|.. ..+..|+--.|-.=|.
T Consensus 277 l~~wsEeEcr~FEegl~~yGK-DF~lIr~---nkvrtRsvgElVeyYY 320 (445)
T KOG4329|consen 277 LSGWSEEECRNFEEGLELYGK-DFHLIRA---NKVRTRSVGELVEYYY 320 (445)
T ss_pred cccCCHHHHHHHHHHHHHhcc-cHHHHHh---cccccchHHHHHHHHH
Confidence 346999999999999999999 8888874 3456787766654443
No 42
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional
Probab=23.14 E-value=49 Score=33.34 Aligned_cols=50 Identities=24% Similarity=0.294 Sum_probs=36.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcc---cCCCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFA---SYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~---~f~~RT~VDLKDKWRNLlK 596 (662)
...||.||+..|.+-|-+|+.--=+.+. +|. ..-.||+..|.++|-..++
T Consensus 5 qdawt~e~d~llae~vl~~i~eg~tql~--afe~~g~~L~rt~aac~fRwNs~vr 57 (170)
T PRK13923 5 QDAWTQERDGLLAEVVLRHIREGGTQLK--AFEEVGDALKRTAAACGFRWNSVVR 57 (170)
T ss_pred hhhhhhHHHHHHHHHHHHHHhccchHHH--HHHHHHHHHhhhHHHHHhHHHHHHH
Confidence 5689999999999999988752223333 222 2358999999999966655
No 43
>cd01187 INT_SG4 INT_SG4, DNA breaking-rejoining enzymes, integrase/recombinases subgroup 4, N- and C-terminal domains. The CD contains mainly predicted bacterial integrase/recombinases for which not much biochemical characterization is available.
Probab=21.30 E-value=1.6e+02 Score=29.36 Aligned_cols=83 Identities=12% Similarity=0.118 Sum_probs=48.3
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCC------chhhhhhhhcccCCCCChhhHHHHHHHhhcc-ccCCCCCCccccccccCC
Q 006062 543 KHHRAWTLSEVMKLVEGVSKYGAG------RWSEIKRLAFASYSYRTSVDLKDKWRNLLKA-SLAQTPPDSRMGARKHAS 615 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVekyG~G------~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa-s~~q~p~~~~~~~Rk~~~ 615 (662)
+..+.||.+|..+|++++..++.. .|..|....+ ...-|.+-=+.=+|..+-.. ....-+..++ ++. +
T Consensus 97 ~~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~~~~~i~ll~-~tGlR~~E~~~L~~~did~~~~~i~i~~~K~---~~~-r 171 (299)
T cd01187 97 PTPYIYTDEEIQRLLAAALQLPPTSGLRPWTYRTLFGLLA-VTGLRLGEALRLRLSDVDLDSGILTVRDSKF---GKS-R 171 (299)
T ss_pred CCCccCCHHHHHHHHHHHHhCCCCCCchhhHHHHHHHHHH-HhCCcHHHHHhCcHHhcCCCCCeEEEEecCC---CCc-c
Confidence 334579999999999999877643 2444443211 12457766666677665321 1110011111 222 5
Q ss_pred CCCCChHHHHHHHHH
Q 006062 616 SVPIPMPVLLRVREL 630 (662)
Q Consensus 616 ~~piP~~lL~RVreL 630 (662)
.+|+|+++..-+.+.
T Consensus 172 ~vpl~~~l~~~l~~~ 186 (299)
T cd01187 172 LVPLHASTRAALRDY 186 (299)
T ss_pred EEeCCHHHHHHHHHH
Confidence 789999988777664
Done!