Query 006062
Match_columns 662
No_of_seqs 167 out of 416
Neff 3.3
Searched_HMMs 29240
Date Mon Mar 25 14:57:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006062.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006062hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2aje_A Telomere repeat-binding 99.9 1.4E-22 4.8E-27 180.5 9.5 87 539-634 7-93 (105)
2 2roh_A RTBP1, telomere binding 99.9 8.6E-22 3E-26 179.6 10.8 101 526-635 8-112 (122)
3 2ckx_A NGTRF1, telomere bindin 99.8 5.4E-21 1.9E-25 163.8 6.9 81 546-635 1-81 (83)
4 2juh_A Telomere binding protei 99.8 1.4E-19 4.6E-24 165.0 9.7 86 539-633 11-96 (121)
5 1x58_A Hypothetical protein 49 99.6 2.6E-16 8.8E-21 129.2 6.9 55 542-598 5-59 (62)
6 3sjm_A Telomeric repeat-bindin 99.6 3.1E-15 1.1E-19 122.1 6.3 55 543-599 9-63 (64)
7 1ity_A TRF1; helix-turn-helix, 99.5 3.4E-14 1.2E-18 116.0 7.3 63 540-604 5-67 (69)
8 1w0t_A Telomeric repeat bindin 99.4 1.8E-13 6.3E-18 106.6 5.5 52 544-597 1-52 (53)
9 2dim_A Cell division cycle 5-l 99.2 9.6E-12 3.3E-16 101.7 6.9 60 542-605 6-65 (70)
10 1guu_A C-MYB, MYB proto-oncoge 99.2 1.3E-11 4.6E-16 95.2 5.9 49 545-597 3-51 (52)
11 2d9a_A B-MYB, MYB-related prot 99.2 1.6E-11 5.4E-16 97.5 6.4 54 542-599 5-58 (60)
12 1gvd_A MYB proto-oncogene prot 99.2 3.9E-11 1.3E-15 92.8 6.2 49 545-597 3-51 (52)
13 1x41_A Transcriptional adaptor 99.1 1.6E-10 5.5E-15 92.3 5.6 52 543-598 6-57 (60)
14 1gv2_A C-MYB, MYB proto-oncoge 99.0 3.6E-10 1.2E-14 97.8 6.9 57 545-605 4-60 (105)
15 2elk_A SPCC24B10.08C protein; 99.0 3.1E-10 1.1E-14 90.4 4.7 47 545-595 9-56 (58)
16 3osg_A MYB21; transcription-DN 99.0 7.3E-10 2.5E-14 99.5 7.0 61 540-605 6-66 (126)
17 2k9n_A MYB24; R2R3 domain, DNA 99.0 6.4E-10 2.2E-14 97.2 6.1 57 545-605 1-57 (107)
18 3zqc_A MYB3; transcription-DNA 98.9 1.5E-09 5E-14 98.0 7.0 57 545-605 2-58 (131)
19 1h8a_C AMV V-MYB, MYB transfor 98.9 1.3E-09 4.5E-14 97.6 6.3 58 544-605 26-83 (128)
20 2yum_A ZZZ3 protein, zinc fing 98.9 1.6E-09 5.4E-14 89.5 5.7 54 542-599 5-63 (75)
21 2din_A Cell division cycle 5-l 98.8 1.5E-09 5.2E-14 87.7 3.7 54 544-603 8-61 (66)
22 2cu7_A KIAA1915 protein; nucle 98.8 2.9E-09 9.8E-14 87.7 4.7 54 543-601 7-60 (72)
23 2yus_A SWI/SNF-related matrix- 98.8 4E-09 1.4E-13 89.4 4.9 51 540-595 13-63 (79)
24 3zqc_A MYB3; transcription-DNA 98.7 2.1E-08 7.2E-13 90.4 7.3 57 545-606 54-110 (131)
25 1h89_C C-MYB, MYB proto-oncoge 98.7 1.8E-08 6E-13 93.2 6.7 58 544-605 57-114 (159)
26 1h89_C C-MYB, MYB proto-oncoge 98.7 3.8E-09 1.3E-13 97.6 1.7 58 544-605 5-62 (159)
27 2llk_A Cyclin-D-binding MYB-li 98.7 1.1E-08 3.8E-13 86.0 4.3 50 542-597 20-69 (73)
28 1gv2_A C-MYB, MYB proto-oncoge 98.6 3.3E-08 1.1E-12 85.5 6.1 49 545-598 56-104 (105)
29 2cqr_A RSGI RUH-043, DNAJ homo 98.6 3.5E-08 1.2E-12 82.8 5.6 54 540-597 13-69 (73)
30 3osg_A MYB21; transcription-DN 98.6 5.7E-08 2E-12 87.2 5.8 51 545-600 62-112 (126)
31 1h8a_C AMV V-MYB, MYB transfor 98.5 9.4E-08 3.2E-12 85.6 5.6 49 545-598 79-127 (128)
32 2k9n_A MYB24; R2R3 domain, DNA 98.5 7E-08 2.4E-12 84.3 4.5 49 545-598 53-101 (107)
33 2ltp_A Nuclear receptor corepr 97.8 3.3E-08 1.1E-12 85.0 0.0 48 545-597 16-63 (89)
34 2cjj_A Radialis; plant develop 98.2 8.9E-07 3E-11 77.5 4.8 48 545-596 8-58 (93)
35 1ign_A Protein (RAP1); RAP1,ye 98.0 3.9E-06 1.3E-10 84.5 5.5 53 544-600 7-64 (246)
36 2eqr_A N-COR1, N-COR, nuclear 97.9 1.1E-05 3.9E-10 64.7 5.8 52 540-596 7-58 (61)
37 2cqq_A RSGI RUH-037, DNAJ homo 97.8 3.3E-05 1.1E-09 64.7 6.2 49 544-597 7-58 (72)
38 3hm5_A DNA methyltransferase 1 97.4 0.00019 6.5E-09 63.2 5.5 52 546-598 31-83 (93)
39 2ebi_A DNA binding protein GT- 97.3 0.00013 4.4E-09 61.5 3.0 54 543-597 2-65 (86)
40 1wgx_A KIAA1903 protein; MYB D 97.2 0.0005 1.7E-08 58.1 5.9 48 546-597 9-59 (73)
41 2iw5_B Protein corest, REST co 97.1 0.00038 1.3E-08 69.9 5.1 51 541-596 129-179 (235)
42 4b4c_A Chromodomain-helicase-D 96.9 0.0014 4.6E-08 62.6 6.5 52 545-596 134-195 (211)
43 1fex_A TRF2-interacting telome 96.7 0.0015 5.3E-08 52.6 4.8 49 545-596 2-58 (59)
44 4iej_A DNA methyltransferase 1 96.1 0.007 2.4E-07 53.4 5.5 51 546-597 31-82 (93)
45 2yqk_A Arginine-glutamic acid 96.1 0.016 5.4E-07 47.0 7.0 52 542-597 6-57 (63)
46 2xb0_X Chromo domain-containin 95.7 0.0051 1.7E-07 62.7 3.2 31 546-576 169-199 (270)
47 1ofc_X ISWI protein; nuclear p 95.5 0.0085 2.9E-07 62.1 4.1 54 544-597 211-275 (304)
48 2crg_A Metastasis associated p 95.5 0.029 1E-06 46.4 6.5 54 541-598 4-57 (70)
49 4eef_G F-HB80.4, designed hema 94.6 0.011 3.8E-07 50.3 1.7 44 545-592 20-66 (74)
50 2xag_B REST corepressor 1; ami 94.6 0.034 1.1E-06 60.9 5.7 49 542-595 377-425 (482)
51 4b4c_A Chromodomain-helicase-D 94.1 0.049 1.7E-06 51.9 5.2 53 542-596 4-58 (211)
52 2y9y_A Imitation switch protei 94.0 0.036 1.2E-06 59.0 4.2 53 545-597 228-291 (374)
53 1irz_A ARR10-B; helix-turn-hel 93.0 0.21 7.2E-06 41.4 6.3 54 541-596 3-61 (64)
54 4a69_C Nuclear receptor corepr 92.1 0.13 4.3E-06 44.8 4.2 49 541-594 39-87 (94)
55 1ug2_A 2610100B20RIK gene prod 86.6 0.58 2E-05 41.5 4.1 52 541-596 29-82 (95)
56 2xb0_X Chromo domain-containin 85.5 1.1 3.9E-05 45.7 6.2 51 544-596 2-54 (270)
57 2lr8_A CAsp8-associated protei 82.0 0.31 1.1E-05 41.2 0.0 48 545-597 14-63 (70)
58 1ign_A Protein (RAP1); RAP1,ye 79.7 1.6 5.5E-05 44.4 4.6 28 566-597 172-199 (246)
59 2xag_B REST corepressor 1; ami 52.2 3 0.0001 45.8 0.0 47 545-596 189-235 (482)
60 1ofc_X ISWI protein; nuclear p 43.9 25 0.00086 36.6 5.3 48 545-596 110-157 (304)
No 1
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=99.87 E-value=1.4e-22 Score=180.52 Aligned_cols=87 Identities=37% Similarity=0.644 Sum_probs=75.7
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCC
Q 006062 539 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVP 618 (662)
Q Consensus 539 ~k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~~~~~~Rk~~~~~p 618 (662)
.++|+++++||.||+++|++||++||.|+|+.|+..+|..|.+||++|||||||||+|.... .|.. | ++.|
T Consensus 7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~-~p~~-----~---rg~~ 77 (105)
T 2aje_A 7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKI-SPQQ-----R---RGEP 77 (105)
T ss_dssp --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTC-CTTT-----T---TCCS
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC-Cccc-----c---cCCC
Confidence 35688899999999999999999999999999999887788999999999999999987665 2443 2 4789
Q ss_pred CChHHHHHHHHHHhhc
Q 006062 619 IPMPVLLRVRELAEMQ 634 (662)
Q Consensus 619 iP~~lL~RVreLA~~~ 634 (662)
||+++|+||++|++..
T Consensus 78 ~P~~~l~rv~~~~~~~ 93 (105)
T 2aje_A 78 VPQELLNRVLNAHGYW 93 (105)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 9999999999999874
No 2
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=99.86 E-value=8.6e-22 Score=179.55 Aligned_cols=101 Identities=36% Similarity=0.532 Sum_probs=84.2
Q ss_pred CCCCCceecccCC----CCcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCC
Q 006062 526 PDDNPATVRAVKG----GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 601 (662)
Q Consensus 526 sd~~~v~vp~~k~----~k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q 601 (662)
+...++.+|..|. .++||++++||.||+++|++||++||.|+|+.|+..+|..|.+||++|||||||||+|....
T Consensus 8 ~~~~~~~~p~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~- 86 (122)
T 2roh_A 8 NSLALANVPLSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASI- 86 (122)
T ss_dssp CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHS-
T ss_pred CcccccccCcccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccC-
Confidence 3455666777553 26788899999999999999999999999999999888888999999999999999986554
Q ss_pred CCCCccccccccCCCCCCChHHHHHHHHHHhhcC
Q 006062 602 TPPDSRMGARKHASSVPIPMPVLLRVRELAEMQS 635 (662)
Q Consensus 602 ~p~~~~~~~Rk~~~~~piP~~lL~RVreLA~~~~ 635 (662)
.|.. | ++.++|+++++||+++...+.
T Consensus 87 ~p~~-----k---r~~~~p~e~~~~v~~~h~~~g 112 (122)
T 2roh_A 87 APQQ-----R---RGAPVPQELLDRVLAAQAYWS 112 (122)
T ss_dssp CTTT-----C---CCSSCCHHHHHHHHHHHHHHH
T ss_pred Cccc-----c---CCCCCCHHHHHHHHHHHHHHh
Confidence 2443 1 368999999999999887764
No 3
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=99.82 E-value=5.4e-21 Score=163.76 Aligned_cols=81 Identities=38% Similarity=0.657 Sum_probs=70.6
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCCCChHHHH
Q 006062 546 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLL 625 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~~~~~~Rk~~~~~piP~~lL~ 625 (662)
++||+||+++|++||++||.|+|+.|++.+|..|++||.+|||||||||+|.+.. .|.. + .+.|||+++|+
T Consensus 1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~-~p~~------~--~~~~~p~~~~~ 71 (83)
T 2ckx_A 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI-APQQ------R--RGEPVPQDLLD 71 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHS-CGGG------C--CSSCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccC-Cccc------c--cCCCCCHHHHH
Confidence 6899999999999999999999999999888778999999999999999986654 2332 1 47899999999
Q ss_pred HHHHHHhhcC
Q 006062 626 RVRELAEMQS 635 (662)
Q Consensus 626 RVreLA~~~~ 635 (662)
||++|.....
T Consensus 72 rv~~~~a~~~ 81 (83)
T 2ckx_A 72 RVLAAHAYWS 81 (83)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999987643
No 4
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=99.79 E-value=1.4e-19 Score=164.95 Aligned_cols=86 Identities=37% Similarity=0.636 Sum_probs=75.3
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCC
Q 006062 539 GVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVP 618 (662)
Q Consensus 539 ~k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~~~~~~Rk~~~~~p 618 (662)
.+.|+++++||.||+++|++||++||.|+|+.|+..++..|.+||++|||||||||++.... .|.. + ++.+
T Consensus 11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~-~p~~-----k---rg~~ 81 (121)
T 2juh_A 11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASI-APQQ-----R---RGEP 81 (121)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHT-CSTT-----C---CCSC
T ss_pred ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhcc-CCcc-----c---CCCC
Confidence 36788899999999999999999999999999999888888999999999999999986544 2432 1 3679
Q ss_pred CChHHHHHHHHHHhh
Q 006062 619 IPMPVLLRVRELAEM 633 (662)
Q Consensus 619 iP~~lL~RVreLA~~ 633 (662)
+|+++++||+++...
T Consensus 82 ~p~e~~~rv~~~h~~ 96 (121)
T 2juh_A 82 VPQDLLDRVLAAHAY 96 (121)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999999877
No 5
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.63 E-value=2.6e-16 Score=129.19 Aligned_cols=55 Identities=27% Similarity=0.405 Sum_probs=49.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006062 542 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 598 (662)
Q Consensus 542 RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas 598 (662)
.+.|++||.||+++|++||++||. +|+.|+..| ..|.+||+||||||||||.|..
T Consensus 5 ~~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y-~f~~~RT~VdLKdk~r~L~k~~ 59 (62)
T 1x58_A 5 SSGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSF-PFQKGRRAVDLAHKYHRLISGP 59 (62)
T ss_dssp CCCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHS-CCCTTCCHHHHHHHHHHHHTCS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhC-CCccCcccchHHHHHHHHHhcc
Confidence 456899999999999999999999 999999765 3479999999999999999864
No 6
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.56 E-value=3.1e-15 Score=122.05 Aligned_cols=55 Identities=33% Similarity=0.727 Sum_probs=48.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006062 543 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 599 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~ 599 (662)
+++++||+||+++|+++|++||.++|+.|+..+ .|.+||++||+|||+||+|+++
T Consensus 9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~nl~k~gl 63 (64)
T 3sjm_A 9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNY--PFVNRTAVMIKDRWRTMKRLGM 63 (64)
T ss_dssp -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhc--CCCCCCHHHHHHHHHHHhccCC
Confidence 446789999999999999999999999999643 2679999999999999999875
No 7
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.49 E-value=3.4e-14 Score=116.04 Aligned_cols=63 Identities=40% Similarity=0.678 Sum_probs=54.5
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCC
Q 006062 540 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPP 604 (662)
Q Consensus 540 k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~ 604 (662)
..++++.+||.||+++|+++|++||.++|+.|+... .|.+||.+||++||+|++++.+.++..
T Consensus 5 ~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~l~p~i~k~~~ 67 (69)
T 1ity_A 5 HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKLKLISSDS 67 (69)
T ss_dssp TCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHS--CCSSCCHHHHHHHHHHHHHTSCCCCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHc--CcCCCCHHHHHHHHHHHcCCCCCCCCC
Confidence 457788999999999999999999999999998532 133999999999999999999886543
No 8
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.41 E-value=1.8e-13 Score=106.58 Aligned_cols=52 Identities=44% Similarity=0.760 Sum_probs=45.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
++.+||+||+++|+++|++||.++|+.|.... .|.+||++||++||+|++|.
T Consensus 1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~--~~~~Rt~~qcr~Rw~~~~k~ 52 (53)
T 1w0t_A 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHY--KFNNRTSVMLKDRWRTMKKL 52 (53)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHS--CCSSCCHHHHHHHHHHHHTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHc--CCCCCCHHHHHHHHHHHHcc
Confidence 36899999999999999999999999999532 13389999999999999875
No 9
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=9.6e-12 Score=101.66 Aligned_cols=60 Identities=25% Similarity=0.422 Sum_probs=54.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 542 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 542 RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
..++.+||.||++.|+++|++||.++|..|.. .+++||..||++||.|++++.+.++||.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt 65 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIAS----LLHRKSAKQCKARWYEWLDPSIKKTEWS 65 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHH----HSTTCCHHHHHHHHHHTSCSSSCCCCSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HhcCCCHHHHHHHHHHHcCCcccCCCCC
Confidence 34567999999999999999999999999984 3579999999999999999999999986
No 10
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.21 E-value=1.3e-11 Score=95.22 Aligned_cols=49 Identities=29% Similarity=0.532 Sum_probs=45.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
+.+||.||++.|+++|++||.++|+.|.. .|++||..+|+++|.+++.+
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIAN----YLPNRTDVQCQHRWQKVLNP 51 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHH----TSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HcCCCCHHHHHHHHHHHcCc
Confidence 67999999999999999999999999984 36799999999999999875
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.21 E-value=1.6e-11 Score=97.52 Aligned_cols=54 Identities=20% Similarity=0.402 Sum_probs=48.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006062 542 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 599 (662)
Q Consensus 542 RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~ 599 (662)
...+.+||.||++.|+++|++||.++|+.|.. .|++||..+|+++|.+++++.+
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~p~i 58 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLAS----HFPNRTDQQCQYRWLRVLSGPS 58 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHH----HCSSSCHHHHHHHHHHTSCSSS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HccCCCHHHHHHHHHHHcCCcc
Confidence 44577999999999999999999999999984 3679999999999999998765
No 12
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.16 E-value=3.9e-11 Score=92.81 Aligned_cols=49 Identities=33% Similarity=0.646 Sum_probs=45.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
+.+||.||++.|+++|++||.++|..|.. .|++||..+|++||.|++++
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P 51 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCTTCHHHHHT----TSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCcChHHHHHH----HcCCCCHHHHHHHHHHHcCc
Confidence 67999999999999999999999999984 46899999999999999875
No 13
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.05 E-value=1.6e-10 Score=92.29 Aligned_cols=52 Identities=21% Similarity=0.482 Sum_probs=46.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006062 543 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 598 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas 598 (662)
-.+.+||.||++.|+++|++||.++|..|.. .+++||..+|+++|.+++...
T Consensus 6 ~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~----~~~~Rt~~qcr~r~~~~l~~~ 57 (60)
T 1x41_A 6 SGDPSWTAQEEMALLEAVMDCGFGNWQDVAN----QMCTKTKEECEKHYMKYFSGP 57 (60)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTCTTCHHHHHH----HHTTSCHHHHHHHHHHHTTCS
T ss_pred CCCCCCCHHHHHHHHHHHHHHCcCcHHHHHH----HhCCCCHHHHHHHHHHHccCC
Confidence 4467899999999999999999999999985 347899999999999998654
No 14
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=99.02 E-value=3.6e-10 Score=97.83 Aligned_cols=57 Identities=28% Similarity=0.549 Sum_probs=52.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
+.+||+||++.|+++|++||.++|..|.. .+++||..+|+++|++++.+.+..+||.
T Consensus 4 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 60 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 60 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCTTCHHHHHT----TSTTCCHHHHHHHHHHTTCCCCCCCCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCCcHHHHhh----hhcCCCHHHHHHHHHhccCCcccccCCC
Confidence 57899999999999999999999999983 4689999999999999999888877775
No 15
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=98.98 E-value=3.1e-10 Score=90.38 Aligned_cols=47 Identities=21% Similarity=0.502 Sum_probs=42.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCC-CCChhhHHHHHHHhh
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYS-YRTSVDLKDKWRNLL 595 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~-~RT~VDLKDKWRNLl 595 (662)
+.+||++|++.|+++|++||.++|+.|+. .++ +||..+|++||.++.
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~~~W~~IA~----~~~~~Rt~~qcr~r~~~~~ 56 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGLGNWADIAD----YVGNARTKEECRDHYLKTY 56 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTTTCHHHHHH----HHCSSCCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHH----HHCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999984 356 899999999999874
No 16
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.97 E-value=7.3e-10 Score=99.54 Aligned_cols=61 Identities=25% Similarity=0.510 Sum_probs=54.0
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 540 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 540 k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
++..++.+||+||++.|+++|++||. +|..|.. .+++||..+|++||+|.+.+.+.++||.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~----~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT 66 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAA----TFPNRNARQCRDRWKNYLAPSISHTPWT 66 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHH----TCTTCCHHHHHHHHHHHTSTTSCCSCCC
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHhhhcccccccccCC
Confidence 34555789999999999999999999 9999984 4679999999999999999998888885
No 17
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.96 E-value=6.4e-10 Score=97.22 Aligned_cols=57 Identities=26% Similarity=0.478 Sum_probs=51.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
+.+||+||++.|+++|++||.++|..|.. .+++||+.+|++||.|.+.+.+..+||.
T Consensus 1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT 57 (107)
T 2k9n_A 1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQ----LMITRNPRQCRERWNNYINPALRTDPWS 57 (107)
T ss_dssp CCSSCHHHHHHHHHHHHHHCSSCHHHHHH----HTTTSCHHHHHHHHHHHSSSCCTTCCCC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHhh----hcCCCCHHHHHHHHHHHHcccccccccC
Confidence 35899999999999999999999999984 3679999999999999999998888885
No 18
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.91 E-value=1.5e-09 Score=98.01 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=52.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
+.+||.||++.|+.+|++||.++|..|. ..+++||..+|++||+|.+.+.+.++||.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia----~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 58 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRIT----SFLPNRSPKQCRERWFNHLDPAVVKHAWT 58 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGT----TSCTTSCHHHHHHHHHHHTSTTCCCSCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHH----HHHCCCCHHHHHHHHhhccCccccCCCCC
Confidence 4689999999999999999999999998 34689999999999999999998888885
No 19
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.91 E-value=1.3e-09 Score=97.63 Aligned_cols=58 Identities=29% Similarity=0.603 Sum_probs=52.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
.+.+||.||++.|+++|++||.++|..|.. .+++||..+|+++|.+++.+.+..+||.
T Consensus 26 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 83 (128)
T 1h8a_C 26 NKGPWTKEEDQRVIEHVQKYGPKRWSDIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 83 (128)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCSCCHHHHHH----HSSSCCHHHHHHHHHHTTCSSSCCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHH----HhcCCcHHHHHHHHHHhcccccccccCC
Confidence 357899999999999999999999999984 3689999999999999999888878885
No 20
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.89 E-value=1.6e-09 Score=89.45 Aligned_cols=54 Identities=22% Similarity=0.373 Sum_probs=46.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCC-----CchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006062 542 RKHHRAWTLSEVMKLVEGVSKYGA-----GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 599 (662)
Q Consensus 542 RK~RRpWT~EEveaLv~GVekyG~-----G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~ 599 (662)
...+.+||.||++.|+++|++||. ++|..|.. .+.+||..||+++|.++++...
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~----~~~~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIAD----ELGNRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHH----HHSSSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHH----HhCCCCHHHHHHHHHHHHHHHH
Confidence 344679999999999999999996 79999984 3578999999999999887654
No 21
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.5e-09 Score=87.73 Aligned_cols=54 Identities=19% Similarity=0.298 Sum_probs=47.5
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCC
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTP 603 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p 603 (662)
.+.+||.||++.|+++|++||. +|..|.. +.+||..+|+++|.+++++.+.+.+
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-----~~gRt~~qcr~Rw~~~l~~~~~~~~ 61 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT-QWRTIAP-----IIGRTAAQCLEHYEFLLDKAAQRDS 61 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-----HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred CCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-----ccCcCHHHHHHHHHHHhChHhcCCC
Confidence 4678999999999999999999 9999995 3479999999999999998776543
No 22
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.81 E-value=2.9e-09 Score=87.71 Aligned_cols=54 Identities=26% Similarity=0.491 Sum_probs=47.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCC
Q 006062 543 KHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQ 601 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q 601 (662)
-.+.+||.||++.|+++|++||. +|+.|.. .|++||..+||.+|.++++.....
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~----~~~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR-RWTKISK----LIGSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHHHHhc
Confidence 34679999999999999999999 9999985 357999999999999999876543
No 23
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=98.79 E-value=4e-09 Score=89.40 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=44.8
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006062 540 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 595 (662)
Q Consensus 540 k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 595 (662)
..+..+.+||.||++.|++||++|| ++|..|.. .+.+||..+|+.+|.++.
T Consensus 13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~----~v~~RT~~qcr~r~~~~~ 63 (79)
T 2yus_A 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSE----HVGSRTQDECILHFLRLP 63 (79)
T ss_dssp CSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHH----HHSSCCHHHHHHHHTTSC
T ss_pred cccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHH----HcCCCCHHHHHHHHHHhc
Confidence 4455678999999999999999999 89999985 346899999999999983
No 24
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.70 E-value=2.1e-08 Score=90.45 Aligned_cols=57 Identities=23% Similarity=0.478 Sum_probs=50.8
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 606 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~~ 606 (662)
+.+||.||++.|+++|.+||. +|+.|.. .|++||..+||++|.++++..+...++.+
T Consensus 54 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~~l~~~~~~~~~~~ 110 (131)
T 3zqc_A 54 KHAWTPEEDETIFRNYLKLGS-KWSVIAK----LIPGRTDNAIKNRWNSSISKRISTNSNHK 110 (131)
T ss_dssp CSCCCHHHHHHHHHHHHHSCS-CHHHHTT----TSTTCCHHHHHHHHHHTTGGGCCCCTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHHHhhcCCCcc
Confidence 458999999999999999996 9999983 47899999999999999998888777653
No 25
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.70 E-value=1.8e-08 Score=93.19 Aligned_cols=58 Identities=28% Similarity=0.527 Sum_probs=51.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
.+.+||.||++.|+++|++||.++|+.|.. .+++||..+|+++|.+++.+.+..+||.
T Consensus 57 ~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT 114 (159)
T 1h89_C 57 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNPEVKKTSWT 114 (159)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCSCCHHHHHH----TSTTCCHHHHHHHHHHTTCTTSCCSCCC
T ss_pred CCCCCChHHHHHHHHHHHHhCcccHHHHHH----HcCCCCHHHHHHHHHHHhCccccccCCC
Confidence 367999999999999999999999999984 4689999999999999998887767774
No 26
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.68 E-value=3.8e-09 Score=97.64 Aligned_cols=58 Identities=28% Similarity=0.479 Sum_probs=18.2
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
.+.+||.||++.|+++|++||.++|..|.. .+++||+.+|+++|+|++.+.+.++||.
T Consensus 5 ~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt 62 (159)
T 1h89_C 5 GKTRWTREEDEKLKKLVEQNGTDDWKVIAN----YLPNRTDVQCQHRWQKVLNPELIKGPWT 62 (159)
T ss_dssp ------------------------------------------CHHHHHHTTTCTTCCCSCCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH----HcCCCCHHHHHHHHHHccCCCcCCCCCC
Confidence 357899999999999999999999999983 4679999999999999999988888885
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.68 E-value=1.1e-08 Score=85.97 Aligned_cols=50 Identities=30% Similarity=0.411 Sum_probs=43.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 542 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 542 RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
.-.+.+||+||++.|++.|++||. +|+.|.+ .| +||..+||++|+.|.+.
T Consensus 20 ~i~k~~wT~EED~~L~~l~~~~G~-kW~~IA~----~l-gRt~~q~knRw~~L~~~ 69 (73)
T 2llk_A 20 RNHVGKYTPEEIEKLKELRIKHGN-DWATIGA----AL-GRSASSVKDRCRLMKDT 69 (73)
T ss_dssp CCCCCSSCHHHHHHHHHHHHHHSS-CHHHHHH----HH-TSCHHHHHHHHHHCSCC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCC-CHHHHHH----Hh-CCCHHHHHHHHHHHHHH
Confidence 344679999999999999999998 6999984 35 99999999999987653
No 28
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.63 E-value=3.3e-08 Score=85.54 Aligned_cols=49 Identities=24% Similarity=0.550 Sum_probs=43.6
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 598 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas 598 (662)
+.+||.||++.|+++|++||. +|+.|.. .|++||..+||++|+++++..
T Consensus 56 ~~~Wt~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~~~~~~ 104 (105)
T 1gv2_A 56 KTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAIKNHWNSTMRRK 104 (105)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHHT----TCTTCCHHHHHHHHHHHTC--
T ss_pred ccCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHHHHHhcc
Confidence 579999999999999999997 9999983 478999999999999998753
No 29
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.61 E-value=3.5e-08 Score=82.82 Aligned_cols=54 Identities=19% Similarity=0.370 Sum_probs=46.5
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhhCC---CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 540 VRRKHHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 540 k~RK~RRpWT~EEveaLv~GVekyG~---G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
+.+-.+.+||.+|+.+|+.+|++||. .+|..|+. .+++||..+|+.+|.+|++-
T Consensus 13 ~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~----~vpGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 13 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIAR----CVPSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGG----GCSSSCHHHHHHHHHHHHSS
T ss_pred ccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH----HcCCCCHHHHHHHHHHHHHc
Confidence 34455778999999999999999993 59999983 46899999999999999863
No 30
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.56 E-value=5.7e-08 Score=87.23 Aligned_cols=51 Identities=27% Similarity=0.613 Sum_probs=44.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 600 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~ 600 (662)
+.+||.||++.|+++|++||. +|+.|.. .|++||..+||+||++|++.--.
T Consensus 62 ~~~WT~eEd~~L~~~v~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~l~~k~~~ 112 (126)
T 3osg_A 62 HTPWTAEEDALLVQKIQEYGR-QWAIIAK----FFPGRTDIHIKNRWVTISNKLGI 112 (126)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHHT----TSTTCCHHHHHHHHHHHHHHTTC
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHHH----HcCCCCHHHHHHHHHHHHHhcCC
Confidence 468999999999999999996 9999984 47899999999999999875433
No 31
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.51 E-value=9.4e-08 Score=85.63 Aligned_cols=49 Identities=24% Similarity=0.544 Sum_probs=44.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 598 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas 598 (662)
+.+||.||++.|+++|++||. +|+.|.. .|++||..+||++|+++++..
T Consensus 79 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~r~~~~~~~~ 127 (128)
T 1h8a_C 79 KTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAVKNHWNSTMRRK 127 (128)
T ss_dssp CSCCCHHHHHHHHHHHHHHCS-CHHHHGG----GSTTCCHHHHHHHHHTTTTC-
T ss_pred cccCCHHHHHHHHHHHHHHCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhcc
Confidence 578999999999999999997 9999984 468999999999999998753
No 32
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.50 E-value=7e-08 Score=84.34 Aligned_cols=49 Identities=20% Similarity=0.587 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 598 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas 598 (662)
+.+||.||++.|+.+|.+||. +|+.|.. .|++||..+||++|++|++..
T Consensus 53 ~~~WT~eEd~~L~~~~~~~G~-~W~~Ia~----~l~gRt~~~~k~rw~~l~r~~ 101 (107)
T 2k9n_A 53 TDPWSPEEDMLLDQKYAEYGP-KWNKISK----FLKNRSDNNIRNRWMMIARHR 101 (107)
T ss_dssp TCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHHHHhCc-CHHHHHH----HCCCCCHHHHHHHHHHHHhhH
Confidence 579999999999999999998 9999985 357999999999999999753
No 33
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=97.77 E-value=3.3e-08 Score=84.99 Aligned_cols=48 Identities=27% Similarity=0.406 Sum_probs=43.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
+.+||.||++.|+++|++||. +|..|.. .|++||..+||.+|.++++.
T Consensus 16 ~~~WT~eEd~~l~~~~~~~G~-~W~~IA~----~l~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 16 FQGWTEEEMGTAKKGLLEHGR-NWSAIAR----MVGSKTVSQCKNFYFNYKKR 63 (89)
Confidence 568999999999999999999 8999983 46899999999999999874
No 34
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.22 E-value=8.9e-07 Score=77.46 Aligned_cols=48 Identities=23% Similarity=0.529 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHhhC---CCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKYG---AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG---~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
..+||.||+..|++++.+|| ..+|..|+. .+++||..+|+.+|.+|+.
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~----~vpGRT~~q~k~ry~~l~~ 58 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVAR----AVEGRTPEEVKKHYEILVE 58 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH----HSTTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHH----HcCCCCHHHHHHHHHHHHH
Confidence 45899999999999999998 458999994 4689999999999999974
No 35
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=98.03 E-value=3.9e-06 Score=84.50 Aligned_cols=53 Identities=21% Similarity=0.282 Sum_probs=46.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCc-----hhhhhhhhcccCCCCChhhHHHHHHHhhccccC
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLA 600 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~-----W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~ 600 (662)
.+.+||+||++.|++.|++||..+ |+.|+. .+++||.-+||++|++++++.+.
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk----~LpGRT~nsIRnRw~~~L~~~ln 64 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISH----YVPNHTGNSIRHRFRVYLSKRLE 64 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTT----TSTTSCHHHHHHHHHHTTGGGCC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHH----HcCCCCHHHHHHHHHHHHhhhcc
Confidence 356999999999999999999854 999984 47899999999999999988764
No 36
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.94 E-value=1.1e-05 Score=64.75 Aligned_cols=52 Identities=13% Similarity=0.045 Sum_probs=45.7
Q ss_pred CcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 540 VRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 540 k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
+.|+...+||++|.+.+++|+.+||. +|..|.. .+++||..||...|....|
T Consensus 7 ~~r~~~~~WT~eE~~~F~~~~~~~gk-~w~~Ia~----~l~~rt~~~~v~~Yy~~Kk 58 (61)
T 2eqr_A 7 GDRQFMNVWTDHEKEIFKDKFIQHPK-NFGLIAS----YLERKSVPDCVLYYYLTKK 58 (61)
T ss_dssp CCCSCCCSCCHHHHHHHHHHHHHSTT-CHHHHHH----HCTTSCHHHHHHHHHHHTC
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCC-CHHHHHH----HcCCCCHHHHHHHHHHhcC
Confidence 55778899999999999999999996 9999983 3689999999999987654
No 37
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.79 E-value=3.3e-05 Score=64.65 Aligned_cols=49 Identities=24% Similarity=0.483 Sum_probs=42.9
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~---G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
....||.||+..|.+++.+|+. .+|..|+.. + +||..|++.+|..|...
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~----l-gRt~~eV~~~y~~L~~d 58 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE----L-GRSVTDVTTKAKQLKDS 58 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHH----h-CCCHHHHHHHHHHHHHh
Confidence 3568999999999999999994 579999953 2 79999999999999865
No 38
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=97.37 E-value=0.00019 Score=63.17 Aligned_cols=52 Identities=21% Similarity=0.343 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhc-ccCCCCChhhHHHHHHHhhccc
Q 006062 546 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASYSYRTSVDLKDKWRNLLKAS 598 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~G~W~~Ik~~~f-~~f~~RT~VDLKDKWRNLlKas 598 (662)
.+||.||++.|.+-+++||. +|..|.+.+- ..+..||-.|||+||..+.+.-
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl-RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l 83 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKL 83 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHH
Confidence 79999999999999999999 9999996542 2346899999999999887643
No 39
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=97.26 E-value=0.00013 Score=61.52 Aligned_cols=54 Identities=28% Similarity=0.433 Sum_probs=41.9
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCC---------Cchhhhhhhhc-ccCCCCChhhHHHHHHHhhcc
Q 006062 543 KHHRAWTLSEVMKLVEGVSKYGA---------GRWSEIKRLAF-ASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVekyG~---------G~W~~Ik~~~f-~~f~~RT~VDLKDKWRNLlKa 597 (662)
++...||.+|+.+|+.....+-. ..|..|...-. ..| .||+.+|++||.||.+.
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~-~rs~~qC~~K~~nL~k~ 65 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGF-DRSPDMCTDKWRNLLKE 65 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHH
Confidence 45778999999999999975322 27999985321 112 79999999999999974
No 40
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.20 E-value=0.0005 Score=58.15 Aligned_cols=48 Identities=21% Similarity=0.394 Sum_probs=42.7
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 546 RAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~---G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
..||.+|+.+|.+++..|+. ++|..|.. .+++||..+|+.+|.-|++.
T Consensus 9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~----~V~gKT~eE~~~hY~~l~~~ 59 (73)
T 1wgx_A 9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAA----AVGSRSPEECQRKYMENPRG 59 (73)
T ss_dssp SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH----HTTTSCHHHHHHHHHHSSSS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCccHHHHHHH----HcCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999986 79999984 46789999999999999654
No 41
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.11 E-value=0.00038 Score=69.88 Aligned_cols=51 Identities=24% Similarity=0.448 Sum_probs=44.7
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 541 ~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
..+...+||.+|.+.+++|+.+||. +|..|.+. +.+||..+||.-|.+..|
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK-DW~~IAk~----VgTKT~~QcKnfY~~~kK 179 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR-DFQAISDV----IGNKSVVQVKNFFVNYRR 179 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHHH----HSSCCHHHHHHHHHHTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc-CHHHHHHH----cCCCCHHHHHHHHHHHHH
Confidence 3466889999999999999999998 89999853 579999999999988654
No 42
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.88 E-value=0.0014 Score=62.59 Aligned_cols=52 Identities=25% Similarity=0.385 Sum_probs=40.4
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccC----------CCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASY----------SYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f----------~~RT~VDLKDKWRNLlK 596 (662)
...||.+|+..|+.||.+||.|+|..|+.+..-.| ..++++.|..|--.|++
T Consensus 134 ~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~ 195 (211)
T 4b4c_A 134 DIDWGKEDDSNLLIGIYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIK 195 (211)
T ss_dssp SSCCCHHHHHHHHHHHHHHCTTCHHHHHHCSSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHCcCcHHHHHhChhcCccccccccccccCCChHHHHHHHHHHHH
Confidence 45699999999999999999999999997543111 34667778777666655
No 43
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.74 E-value=0.0015 Score=52.61 Aligned_cols=49 Identities=20% Similarity=0.388 Sum_probs=42.5
Q ss_pred CCCCCHHHHHHHHHHHHhh--------CCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKY--------GAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVeky--------G~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
|.+||.||+.+|++-|.+| |.--|+.+.. ..++.+|-..++|+|++-++
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~---~~~~~HtwqSwRdRy~k~l~ 58 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEK---SSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHH---SCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHH---hHCCCCCHHHHHHHHHHHcc
Confidence 6799999999999999999 6668998874 24689999999999998664
No 44
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=96.09 E-value=0.007 Score=53.44 Aligned_cols=51 Identities=22% Similarity=0.363 Sum_probs=43.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhc-ccCCCCChhhHHHHHHHhhcc
Q 006062 546 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF-ASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~G~W~~Ik~~~f-~~f~~RT~VDLKDKWRNLlKa 597 (662)
..||.||+..|.+-+++|+. +|--|.+.+. ..+..||--|||+||-.+.+.
T Consensus 31 ~~WT~eETd~LfdLc~~fdl-Rw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~ 82 (93)
T 4iej_A 31 DAWTKAETDHLFDLSRRFDL-RFVVIHDRYDHQQFKKRSVEDLKERYYHICAK 82 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT-CHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCC-CeEEEeeccccCCCCCCCHHHHHHHHHHHHHH
Confidence 36999999999999999999 9999997543 245689999999999887753
No 45
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.06 E-value=0.016 Score=46.95 Aligned_cols=52 Identities=21% Similarity=0.399 Sum_probs=43.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 542 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 542 RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
+.....||++|.+...+|+.+||. +|..|... .++.||..||..-|-...|.
T Consensus 6 ~~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt 57 (63)
T 2yqk_A 6 SGIEKCWTEDEVKRFVKGLRQYGK-NFFRIRKE---LLPNKETGELITFYYYWKKT 57 (63)
T ss_dssp CCCCCSCCHHHHHHHHHHHHHTCS-CHHHHHHH---SCTTSCHHHHHHHHHHHHCS
T ss_pred CcCCCCcCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCcHHHHHHHHhcccCC
Confidence 444679999999999999999999 89999842 36899999999887655443
No 46
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=95.67 E-value=0.0051 Score=62.75 Aligned_cols=31 Identities=45% Similarity=0.811 Sum_probs=28.4
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhc
Q 006062 546 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAF 576 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~G~W~~Ik~~~f 576 (662)
-.|+.+|+..|+.||-+||.|+|..|+.+..
T Consensus 169 c~W~~~dD~~LLvGIykyGyG~We~Ir~Dp~ 199 (270)
T 2xb0_X 169 SNWTKEEDEKLLIGVFKYGYGSWTQIRDDPF 199 (270)
T ss_dssp SCCCHHHHHHHHHHHHHHCTTCHHHHHHCTT
T ss_pred CCcChHHHHHHHHHHHHHcCCcHHHHhcCcc
Confidence 4699999999999999999999999997654
No 47
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.49 E-value=0.0085 Score=62.13 Aligned_cols=54 Identities=22% Similarity=0.284 Sum_probs=45.4
Q ss_pred CCCCCCHHHHHHHHHHHHhhCC---Cchhhhhhh-------hccc-CCCCChhhHHHHHHHhhcc
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-------AFAS-YSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~---G~W~~Ik~~-------~f~~-f~~RT~VDLKDKWRNLlKa 597 (662)
+.+.||.+|+..|+.++.+||. |+|..|+.. .|+. |..||+++|..|-.+|++.
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tLi~~ 275 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 275 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999 999999742 1222 2789999999999999974
No 48
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.47 E-value=0.029 Score=46.38 Aligned_cols=54 Identities=15% Similarity=0.326 Sum_probs=45.3
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006062 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 598 (662)
Q Consensus 541 ~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas 598 (662)
-|+....||++|.+.+.+|+.+||. +|..|... .++.||..||..-|....|..
T Consensus 4 ~r~~~~~WT~eE~~~Fe~~l~~yGK-df~~I~~~---~v~~Kt~~~~v~fYY~wKkt~ 57 (70)
T 2crg_A 4 GSSGMEEWSASEACLFEEALEKYGK-DFNDIRQD---FLPWKSLTSIIEYYYMWKTTD 57 (70)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHTCS-CHHHHHHT---TCSSSCHHHHHHHHHHHHTCC
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCc-cHHHHHHH---HcCCCCHHHHHHHHHhhcCCc
Confidence 3677889999999999999999999 89999841 368999999999888655543
No 49
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=94.61 E-value=0.011 Score=50.33 Aligned_cols=44 Identities=23% Similarity=0.434 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHhhCCC---chhhhhhhhcccCCCCChhhHHHHHH
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAG---RWSEIKRLAFASYSYRTSVDLKDKWR 592 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G---~W~~Ik~~~f~~f~~RT~VDLKDKWR 592 (662)
-..||.+|..+|..++.+|+.+ +|..|+ ..+++||..+++..+.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA----~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVA----QYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTG----GGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHH----HHcCCCCHHHHHHHHH
Confidence 4579999999999999999976 999998 3567999999987664
No 50
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=94.59 E-value=0.034 Score=60.90 Aligned_cols=49 Identities=24% Similarity=0.445 Sum_probs=42.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006062 542 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 595 (662)
Q Consensus 542 RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 595 (662)
.+..-+||.+|.+.+++|+.+||. +|..|.. .+..||..+||.-|.+..
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk-dw~~IA~----~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD----VIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT-CHHHHHH----HHSSCCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc-CHHHHHH----HhCCCCHHHHHHHHHHHH
Confidence 356789999999999999999998 9999984 357899999999887644
No 51
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=94.13 E-value=0.049 Score=51.86 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=42.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhC--CCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 542 RKHHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 542 RK~RRpWT~EEveaLv~GVekyG--~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
|...+.||..|...|++|+.+|| .++|..|...+ .|.++|..++++=++.++.
T Consensus 4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da--~L~~Ks~~~v~~y~~~f~~ 58 (211)
T 4b4c_A 4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDA--ELVDKSETDLRRLGELVHN 58 (211)
T ss_dssp ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHT--TCTTSCHHHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHh--ccCCCCHHHHHHHHHHHHH
Confidence 55678999999999999999999 68999999754 4789999999986666554
No 52
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=93.96 E-value=0.036 Score=59.02 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=45.3
Q ss_pred CCCCCHHHHHHHHHHHHhhCC---Cchhhhhhh-------hccc-CCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGA---GRWSEIKRL-------AFAS-YSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~---G~W~~Ik~~-------~f~~-f~~RT~VDLKDKWRNLlKa 597 (662)
.+.||.+|+..|+.++.+||. |+|..|+.. -|+- |..||+..|..|-.+|++.
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~tLi~~ 291 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNTLLQC 291 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHHHHH
Confidence 458999999999999999999 999999753 1222 3789999999999999974
No 53
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=92.98 E-value=0.21 Score=41.39 Aligned_cols=54 Identities=24% Similarity=0.255 Sum_probs=42.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhCCC--chhhhhhhhcccCCCCChhhHH---HHHHHhhc
Q 006062 541 RRKHHRAWTLSEVMKLVEGVSKYGAG--RWSEIKRLAFASYSYRTSVDLK---DKWRNLLK 596 (662)
Q Consensus 541 ~RK~RRpWT~EEveaLv~GVekyG~G--~W~~Ik~~~f~~f~~RT~VDLK---DKWRNLlK 596 (662)
.+|+|-.||+|.-+.++++|+++|.. .|+.|++.-. ..+.|..++| .|||..++
T Consensus 3 ~~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~--v~gLT~~~VkSHLQKYR~~l~ 61 (64)
T 1irz_A 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMN--VDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHC--CTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcC--CCCCCHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999953 2788986432 3678988888 56666554
No 54
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=92.14 E-value=0.13 Score=44.85 Aligned_cols=49 Identities=12% Similarity=0.079 Sum_probs=41.4
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHh
Q 006062 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNL 594 (662)
Q Consensus 541 ~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNL 594 (662)
.|+....||++|.+.+.+|+..||. +|..|. ..+++||..+|-.=+-..
T Consensus 39 ~r~~~~~WT~eE~~~F~~~~~~~gK-~F~~Ia----~~l~~Kt~~~cV~~YY~~ 87 (94)
T 4a69_C 39 DRQVMNMWSEQEKETFREKFMQHPK-NFGLIA----SFLERKTVAECVLYYYLT 87 (94)
T ss_dssp HHHHTCCCCHHHHHHHHHHHHHSTT-CHHHHH----HTCTTCCHHHHHHHHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHHHHcCC-CHHHHH----HHcCCCCHHHHHHHHhcc
Confidence 3567889999999999999999998 999996 347899999998665543
No 55
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=86.60 E-value=0.58 Score=41.52 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=44.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhCC--CchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 541 RRKHHRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 541 ~RK~RRpWT~EEveaLv~GVekyG~--G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
.-.+--.||.||+..++...++-|. -.|+.|.. .|.+|+.-++++|++.|++
T Consensus 29 ~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~----~L~Nks~nqV~~RFq~Lm~ 82 (95)
T 1ug2_A 29 TGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQ----QLGNKTPVEVSHRFRELMQ 82 (95)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHH----HHSSCCHHHHHHHHHHHHH
T ss_pred CCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHH----HHccCCHHHHHHHHHHHHH
Confidence 3445678999999999999999986 58988873 4678999999999999987
No 56
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=85.49 E-value=1.1 Score=45.65 Aligned_cols=51 Identities=14% Similarity=0.194 Sum_probs=42.7
Q ss_pred CCCCCCHHHHHHHHHHHHhhC--CCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 544 HHRAWTLSEVMKLVEGVSKYG--AGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG--~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
+++.||..|...|++++.+|| .++|..|..++ .|..+....++.=+..|+.
T Consensus 2 p~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA--~L~~ks~~~i~~~~~~li~ 54 (270)
T 2xb0_X 2 PLGSIGESEVRALYKAILKFGNLKEILDELIADG--TLPVKSFEKYGETYDEMME 54 (270)
T ss_dssp TTCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTT--SSCCCCHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhc--ccccCCHHHHHHHHHHHHH
Confidence 467899999999999999999 48999998653 5788998888877765553
No 57
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=81.97 E-value=0.31 Score=41.19 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCC--CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGA--GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~--G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
--.||.||+..++...++-|. -.|+.|. ..+ +|+.-++++|++.|++-
T Consensus 14 vvlWTReeDR~IL~~cq~~G~s~~tfa~iA----~~L-nks~~QV~~RF~~Lm~L 63 (70)
T 2lr8_A 14 IILWTRNDDRVILLECQKRGPSSKTFAYLA----AKL-DKNPNQVSERFQQLMKL 63 (70)
Confidence 457999999999999999997 4788887 345 89999999999999863
No 58
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=79.74 E-value=1.6 Score=44.36 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=23.4
Q ss_pred CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 566 GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 566 G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
+.|+.|.. .|++||.+..|||||.+++.
T Consensus 172 ~~fk~ia~----~~P~HT~~SWRdRyrKfl~~ 199 (246)
T 1ign_A 172 EFFKHFAE----EHAAHTENAWRDRFRKFLLA 199 (246)
T ss_dssp THHHHHHH----HTTTSCHHHHHHHHHHTHHH
T ss_pred HHHHHHHH----HCCCCChhhHHHHHHHHHhh
Confidence 37888874 46899999999999998863
No 59
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=52.16 E-value=3 Score=45.85 Aligned_cols=47 Identities=15% Similarity=0.257 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
...||.+|...+.+|+.+||. +|..|.. .+++||.-+|-.-|....|
T Consensus 189 ~d~WT~eE~~lFe~al~~yGK-dF~~I~~----~lp~Ksv~e~V~yYY~WKK 235 (482)
T 2xag_B 189 PDEWTVEDKVLFEQAFSFHGK-TFHRIQQ----MLPDKSIASLVKFYYSWKK 235 (482)
T ss_dssp ----------------------------------------------------
T ss_pred ccccCHHHHHHHHHHHHHcCc-cHHHHHH----HcCCCCHHHHHHHhccccc
Confidence 347999999999999999999 8999983 4688988888765444443
No 60
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=43.87 E-value=25 Score=36.56 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=40.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
-..||..+-.+++.|+.+||..+|..|.. .+.+.|..+.+.=...+..
T Consensus 110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~----ev~~Kt~eEV~~Y~~vFw~ 157 (304)
T 1ofc_X 110 FTAWTKRDFNQFIKANEKYGRDDIDNIAK----DVEGKTPEEVIEYNAVFWE 157 (304)
T ss_dssp CTTCCHHHHHHHHHHHHHHCTTCHHHHTT----SSTTCCHHHHHHHHHHHHH
T ss_pred hcccCHHHHHHHHHHHHHhCHHHHHHHHH----HhcCCCHHHHHHHHHHHHH
Confidence 55699999999999999999999999984 3468999999877666664
Done!