Query 006062
Match_columns 662
No_of_seqs 167 out of 416
Neff 3.3
Searched_HMMs 13730
Date Mon Mar 25 14:57:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006062.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/006062hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ckxa1 a.4.1.3 (A:578-660) Te 99.8 1.4E-19 1E-23 151.9 6.9 80 546-634 1-80 (83)
2 d1w0ua_ a.4.1.4 (A:) Telomeric 99.6 5.4E-16 4E-20 121.1 6.3 54 544-599 1-54 (55)
3 d1w0ta_ a.4.1.4 (A:) DNA-bindi 99.6 1.4E-15 1E-19 117.7 6.1 51 544-596 1-51 (52)
4 d1gvda_ a.4.1.3 (A:) c-Myb, DN 99.2 6.9E-12 5E-16 96.8 6.1 50 544-597 2-51 (52)
5 d1guua_ a.4.1.3 (A:) c-Myb, DN 99.2 1.1E-11 8.3E-16 94.6 5.8 49 545-597 1-49 (50)
6 d1gv2a2 a.4.1.3 (A:144-190) c- 99.0 4.1E-10 3E-14 85.3 6.0 47 545-596 1-47 (47)
7 d2cqra1 a.4.1.3 (A:7-66) DnaJ 98.9 1.7E-09 1.2E-13 84.8 6.6 52 539-594 6-60 (60)
8 d1x41a1 a.4.1.1 (A:8-54) Trans 98.8 9.2E-10 6.7E-14 83.2 4.2 44 547-594 3-46 (47)
9 d1igna1 a.4.1.6 (A:360-445) DN 98.8 1.9E-09 1.4E-13 90.9 5.2 58 545-606 1-63 (86)
10 d1x58a1 a.4.1.1 (A:8-56) Hypot 98.7 1E-08 7.3E-13 78.1 5.9 49 545-595 1-49 (49)
11 d2cu7a1 a.4.1.3 (A:8-72) MYSM1 98.7 8.7E-09 6.3E-13 81.1 5.4 56 545-605 2-57 (65)
12 d2cjja1 a.4.1.3 (A:8-70) Radia 98.6 1E-08 7.6E-13 81.0 5.0 47 546-596 2-51 (63)
13 d1xc5a1 a.4.1.3 (A:413-480) Nu 98.4 1.2E-07 9E-12 75.5 4.6 54 538-596 10-63 (68)
14 d2iw5b1 a.4.1.3 (B:376-440) RE 98.3 2.5E-07 1.8E-11 72.9 4.8 50 542-596 2-51 (65)
15 d1ug2a_ a.4.1.3 (A:) 2610100b2 97.7 4.1E-05 3E-09 65.6 7.8 50 543-597 31-83 (95)
16 d1irza_ a.4.1.11 (A:) Arr10-B 96.9 0.00076 5.5E-08 53.8 6.3 54 541-596 3-61 (64)
17 d2crga1 a.4.1.3 (A:8-64) Metas 96.5 0.0028 2E-07 48.8 6.7 48 547-598 3-50 (57)
18 d2cqqa1 a.4.1.3 (A:8-66) DnaJ 95.7 0.0038 2.8E-07 48.9 3.9 47 546-597 2-51 (59)
19 d1ofcx2 a.4.1.13 (X:851-978) S 92.9 0.054 3.9E-06 48.0 5.3 52 546-597 50-112 (128)
20 d1fexa_ a.4.1.3 (A:) Rap1 {Hum 90.4 0.24 1.8E-05 38.4 5.9 49 545-596 2-58 (59)
21 d1wgxa_ a.4.1.3 (A:) Hypotheti 49.3 8.1 0.00059 30.9 4.1 46 545-594 8-56 (73)
22 d1ofcx1 a.4.1.3 (X:799-850) SA 34.1 25 0.0018 26.2 4.6 39 547-589 1-39 (52)
23 d2fnaa1 a.4.5.11 (A:284-356) H 20.8 27 0.002 27.6 2.7 59 556-627 11-71 (73)
No 1
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}
Probab=99.77 E-value=1.4e-19 Score=151.93 Aligned_cols=80 Identities=36% Similarity=0.605 Sum_probs=69.7
Q ss_pred CCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCccccccccCCCCCCChHHHH
Q 006062 546 RAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLL 625 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~~~~~~Rk~~~~~piP~~lL~ 625 (662)
||||.||+++|++||++||.|+|+.|++.++..|.+||++|||||||||+++.....++. ...++|+++|+
T Consensus 1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~---------~~~~~p~ell~ 71 (83)
T d2ckxa1 1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR---------RGEPVPQDLLD 71 (83)
T ss_dssp CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGC---------CSSCCCHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccc---------cCCCCCHHHHH
Confidence 799999999999999999999999999887777899999999999999999877543322 35789999999
Q ss_pred HHHHHHhhc
Q 006062 626 RVRELAEMQ 634 (662)
Q Consensus 626 RVreLA~~~ 634 (662)
+|.++-+..
T Consensus 72 ~v~~~~~~w 80 (83)
T d2ckxa1 72 RVLAAHAYW 80 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999987643
No 2
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.59 E-value=5.4e-16 Score=121.12 Aligned_cols=54 Identities=33% Similarity=0.714 Sum_probs=48.8
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcccc
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASL 599 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~ 599 (662)
++++||+||+++|++||++||.|+|+.|+..++ |.+||++||+||||||++.++
T Consensus 1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~--~~~Rt~~q~k~Rwrn~~k~~~ 54 (55)
T d1w0ua_ 1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYP--FVNRTAVMIKDRWRTMKRLGM 54 (55)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcC--CCCcCHHHHHHHHHHHhcCCC
Confidence 367999999999999999999999999996543 679999999999999999865
No 3
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56 E-value=1.4e-15 Score=117.72 Aligned_cols=51 Identities=45% Similarity=0.760 Sum_probs=46.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
++++||+||+++|++||++||.|+|+.|+..++ +.+||++||+|||+||.|
T Consensus 1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~--~~~Rt~~q~r~Rw~nl~K 51 (52)
T d1w0ta_ 1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYK--FNNRTSVMLKDRWRTMKK 51 (52)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSC--CSSCCHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcC--CCCCCHHHHHHHHHHHHC
Confidence 478999999999999999999999999986432 679999999999999987
No 4
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.21 E-value=6.9e-12 Score=96.83 Aligned_cols=50 Identities=32% Similarity=0.619 Sum_probs=45.3
Q ss_pred CCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 544 HHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 544 ~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
.|.+||+||++.|+++|++||.++|+.|.. .|++||..||++||+|.+.+
T Consensus 2 ~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~----~l~~Rt~~qc~~Rw~~~L~P 51 (52)
T d1gvda_ 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAK----HLKGRIGKQCRERWHNHLNP 51 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHT----TSTTCCHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCHHHHHH----HHCCCCHHHHHHHHHhhCCC
Confidence 367999999999999999999999999984 46899999999999998764
No 5
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.18 E-value=1.1e-11 Score=94.55 Aligned_cols=49 Identities=29% Similarity=0.532 Sum_probs=44.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
+.+||.+|++.|+++|++||.++|+.|.. .|++||..||++||+|.+.+
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~----~~~~Rt~~qcr~Rw~~~L~P 49 (50)
T d1guua_ 1 KTRWTREEDEKLKKLVEQNGTDDWKVIAN----YLPNRTDVQCQHRWQKVLNP 49 (50)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHH----TSTTCCHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHH----HHCCCCHHHHHHHHHhhCCC
Confidence 45799999999999999999999999984 46899999999999998764
No 6
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.95 E-value=4.1e-10 Score=85.32 Aligned_cols=47 Identities=26% Similarity=0.577 Sum_probs=43.1
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
+.+||.||++.|++.|++||. +|+.|.. .|++||..+||.+|.+++|
T Consensus 1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~----~~~gRt~~~~knr~~~~lr 47 (47)
T d1gv2a2 1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAK----LLPGRTDNAIKNHWNSTMR 47 (47)
T ss_dssp CCCCCHHHHHHHHHHHHHHSS-CHHHHHT----TCTTCCHHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHHhh-HHHHHHh----HcCCCCHHHHHHHHHHHcC
Confidence 468999999999999999998 9999983 4789999999999999875
No 7
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.86 E-value=1.7e-09 Score=84.76 Aligned_cols=52 Identities=19% Similarity=0.372 Sum_probs=45.5
Q ss_pred CCcCCCCCCCCHHHHHHHHHHHHhhCCC---chhhhhhhhcccCCCCChhhHHHHHHHh
Q 006062 539 GVRRKHHRAWTLSEVMKLVEGVSKYGAG---RWSEIKRLAFASYSYRTSVDLKDKWRNL 594 (662)
Q Consensus 539 ~k~RK~RRpWT~EEveaLv~GVekyG~G---~W~~Ik~~~f~~f~~RT~VDLKDKWRNL 594 (662)
...+..+.+||.||++.|+++|.+||.| +|..|. ..+++||..||+.||+.|
T Consensus 6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA----~~l~~Rt~~qc~~R~~~L 60 (60)
T d2cqra1 6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIA----RCVPSKSKEDCIARYKLL 60 (60)
T ss_dssp CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHG----GGCSSSCHHHHHHHHHHH
T ss_pred ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHH----HHcCCCCHHHHHHHHHHC
Confidence 3456667899999999999999999987 699998 346899999999999976
No 8
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.83 E-value=9.2e-10 Score=83.16 Aligned_cols=44 Identities=25% Similarity=0.561 Sum_probs=40.3
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHh
Q 006062 547 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNL 594 (662)
Q Consensus 547 pWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNL 594 (662)
.||.+|++.|+++|++||.++|..|.. .+.+||..+|+.+|.+.
T Consensus 3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~----~~~~Rt~~Qcr~r~~~~ 46 (47)
T d1x41a1 3 SWTAQEEMALLEAVMDCGFGNWQDVAN----QMCTKTKEECEKHYMKY 46 (47)
T ss_dssp SSCHHHHHHHHHHHHHTCTTCHHHHHH----HHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCccHHHHHH----HcCCCCHHHHHHHHHHh
Confidence 399999999999999999999999984 35689999999999885
No 9
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.79 E-value=1.9e-09 Score=90.91 Aligned_cols=58 Identities=19% Similarity=0.199 Sum_probs=51.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCc-----hhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCCc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGR-----WSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPDS 606 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~-----W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~~ 606 (662)
|.+||.||++.|++.|++||..+ |+.|+ ..+++||..||++||+|.+.+.+..++|..
T Consensus 1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA----~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~ 63 (86)
T d1igna1 1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEIS----HYVPNHTGNSIRHRFRVYLSKRLEYVYEVD 63 (86)
T ss_dssp CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHT----TTSTTSCHHHHHHHHHHTTGGGCCCEECBC
T ss_pred CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHH----HHcCCCCHHHHHHHHHHHcCccccCCCCCC
Confidence 56899999999999999999854 99998 346899999999999999999998877753
No 10
>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}
Probab=98.69 E-value=1e-08 Score=78.10 Aligned_cols=49 Identities=33% Similarity=0.548 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhh
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLL 595 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLl 595 (662)
|+.||.||+..|..||++||. .|..|+ +.|+.-++|++|||..|++.|+
T Consensus 1 Rknft~eEv~YL~~GVK~~G~-~WNsIL-Ws~PF~~GR~~vdLA~Ky~~l~ 49 (49)
T d1x58a1 1 RKDFTKEEVNYLFHGVKTMGN-HWNSIL-WSFPFQKGRRAVDLAHKYHRLI 49 (49)
T ss_dssp SSSCCHHHHHHHHHHHHHHCS-CHHHHH-HHSCCCTTCCHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHhcc-hhhhhh-hccCCCCCchhhHHHHHHHhhC
Confidence 578999999999999999999 999999 4555559999999999999874
No 11
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.68 E-value=8.7e-09 Score=81.15 Aligned_cols=56 Identities=25% Similarity=0.472 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccccCCCCCC
Q 006062 545 HRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKASLAQTPPD 605 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas~~q~p~~ 605 (662)
...||.||++.|+++|.+||. +|..|.. .|++||..+|+.+|.++++.....+++.
T Consensus 2 ~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~----~~~~Rt~~q~k~ry~~~~~~~~k~~~~~ 57 (65)
T d2cu7a1 2 SVKWTIEEKELFEQGLAKFGR-RWTKISK----LIGSRTVLQVKSYARQYFKNKVKCGLDK 57 (65)
T ss_dssp CCCCCHHHHHHHHHHHHHTCS-CHHHHHH----HHSSSCHHHHHHHHHHHHHHHSCSCTTC
T ss_pred CCCCCHHHHHHHHHHHHHhcc-hHHHHHH----HcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence 357999999999999999995 9999984 3579999999999999998766655443
No 12
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}
Probab=98.65 E-value=1e-08 Score=80.97 Aligned_cols=47 Identities=21% Similarity=0.510 Sum_probs=42.3
Q ss_pred CCCCHHHHHHHHHHHHhhCCCc---hhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 546 RAWTLSEVMKLVEGVSKYGAGR---WSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~G~---W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
++||.||++.|+++|++||.|. |..|.. .+++||..||+.+|..|++
T Consensus 2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~----~l~gRt~~qc~~r~~~L~~ 51 (63)
T d2cjja1 2 RPWSAKENKAFERALAVYDKDTPDRWANVAR----AVEGRTPEEVKKHYEILVE 51 (63)
T ss_dssp CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHH----HSTTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHCCCCchHHHHHHH----HcCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999974 999983 4689999999999988764
No 13
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.37 E-value=1.2e-07 Score=75.49 Aligned_cols=54 Identities=13% Similarity=0.015 Sum_probs=46.9
Q ss_pred CCCcCCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 538 GGVRRKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 538 ~~k~RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
..++|+...+||.||++.|++||.+||. +|..|+. .|++||..||+..|.+..|
T Consensus 10 ~~~~~~~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~----~~~~rt~~q~~~~yy~~kk 63 (68)
T d1xc5a1 10 VYKDRQVMNMWSEQEKETFREKFMQHPK-NFGLIAS----FLERKTVAECVLYYYLTKK 63 (68)
T ss_dssp TTTSTTTTTCCCTTTHHHHHHHHHHTTS-CSSSHHH----HTTTSCHHHHHHHHHHHTT
T ss_pred HHccccCCCCCCHHHHHHHHHHHHHHCC-cHHHHHH----HcCCCCHHHHHHHHHHHHC
Confidence 3456777889999999999999999997 9999984 4689999999999987654
No 14
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.30 E-value=2.5e-07 Score=72.95 Aligned_cols=50 Identities=24% Similarity=0.454 Sum_probs=43.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 542 RKHHRAWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 542 RK~RRpWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
+|..-+||++|++.|.++|.+||. +|..|.. .|++||..||+++|.++.+
T Consensus 2 ~k~~~~WT~eE~~~f~~~~~~~G~-~w~~Ia~----~~~~kt~~q~~~~y~~~~k 51 (65)
T d2iw5b1 2 QKCNARWTTEEQLLAVQAIRKYGR-DFQAISD----VIGNKSVVQVKNFFVNYRR 51 (65)
T ss_dssp CCCCSSCCHHHHHHHHHHHHHHSS-CHHHHHH----HHSSCCHHHHHHHHHHTTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCc-hHHHHHH----HcCCCCHHHHHHHHHHHHh
Confidence 345677999999999999999997 8999984 3579999999999998765
No 15
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}
Probab=97.70 E-value=4.1e-05 Score=65.64 Aligned_cols=50 Identities=20% Similarity=0.387 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHhhCCCc---hhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 543 KHHRAWTLSEVMKLVEGVSKYGAGR---WSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 543 K~RRpWT~EEveaLv~GVekyG~G~---W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
-+-..||.|||..|++.++++|. + |..|.. .|.+||.-+++.||+.|++-
T Consensus 31 ~~~~~WTrEEDriIL~~~q~~G~-~~~tw~~Ia~----~L~~Rs~~qvr~Rf~~Lm~l 83 (95)
T d1ug2a_ 31 EKVVLWTREADRVILTMCQEQGA-QPHTFSVISQ----QLGNKTPVEVSHRFRELMQL 83 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTTS-CTTTHHHHHH----HHSSCCHHHHHHHHHHHHHH
T ss_pred CccCCcCHHHHHHHHHHHHHcCC-cHHHHHHHHH----HcCCCCHHHHHHHHHHHHHH
Confidence 34667999999999999999997 5 999983 46899999999999999873
No 16
>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=96.92 E-value=0.00076 Score=53.80 Aligned_cols=54 Identities=26% Similarity=0.329 Sum_probs=42.8
Q ss_pred cCCCCCCCCHHHHHHHHHHHHhhCCCch--hhhhhhhcccCCCCChhhHH---HHHHHhhc
Q 006062 541 RRKHHRAWTLSEVMKLVEGVSKYGAGRW--SEIKRLAFASYSYRTSVDLK---DKWRNLLK 596 (662)
Q Consensus 541 ~RK~RRpWT~EEveaLv~GVekyG~G~W--~~Ik~~~f~~f~~RT~VDLK---DKWRNLlK 596 (662)
.+|+|..||+||-+.+++||+.||.++| +.|+..- ..+++|..+++ .|||.-++
T Consensus 3 ~kk~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m--~v~~lT~~qV~SHlQKYrl~l~ 61 (64)
T d1irza_ 3 QKKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLM--NVDKLTRENVASHLQKFRVALK 61 (64)
T ss_dssp CCCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHH--CCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhCccccchHHHHHHc--CCCCCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999998766 4666432 25789999988 67776554
No 17
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=96.51 E-value=0.0028 Score=48.75 Aligned_cols=48 Identities=17% Similarity=0.416 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHHHHHHhhccc
Q 006062 547 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKDKWRNLLKAS 598 (662)
Q Consensus 547 pWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKas 598 (662)
.||+||...+.+|+.+||. +|..|.+ ..+++||..||.+-+-+..|..
T Consensus 3 ~WT~eE~~~F~~~~~~yGK-df~~I~~---~~v~~Ks~~~~v~fYY~~Kkt~ 50 (57)
T d2crga1 3 EWSASEACLFEEALEKYGK-DFNDIRQ---DFLPWKSLTSIIEYYYMWKTTD 50 (57)
T ss_dssp CCCHHHHHHHHHHHHHTCS-CHHHHHH---TTCSSSCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHcc-cHHHHHH---HHcCCCCHHHHHHHHHHHhCCc
Confidence 6999999999999999999 9999974 2358999999999988766543
No 18
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=95.70 E-value=0.0038 Score=48.93 Aligned_cols=47 Identities=26% Similarity=0.519 Sum_probs=40.3
Q ss_pred CCCCHHHHHHHHHHHHhhCC---CchhhhhhhhcccCCCCChhhHHHHHHHhhcc
Q 006062 546 RAWTLSEVMKLVEGVSKYGA---GRWSEIKRLAFASYSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~---G~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlKa 597 (662)
..||.+|...|.+++.+|.. .+|..|... + +||.-++..+++.|...
T Consensus 2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~----v-gkt~~ev~~~~k~l~e~ 51 (59)
T d2cqqa1 2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHE----L-GRSVTDVTTKAKQLKDS 51 (59)
T ss_dssp CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHH----H-TSCHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHH----H-CCCHHHHHHHHHHHHHh
Confidence 47999999999999999975 489999852 3 79999999999987643
No 19
>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=92.94 E-value=0.054 Score=47.99 Aligned_cols=52 Identities=23% Similarity=0.328 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHhhCCCc---hhhhhh----hh---ccc-CCCCChhhHHHHHHHhhcc
Q 006062 546 RAWTLSEVMKLVEGVSKYGAGR---WSEIKR----LA---FAS-YSYRTSVDLKDKWRNLLKA 597 (662)
Q Consensus 546 RpWT~EEveaLv~GVekyG~G~---W~~Ik~----~~---f~~-f~~RT~VDLKDKWRNLlKa 597 (662)
+.+|.||+..|+..+.+||.|+ |..|+. .. |+- |..||+.+|..|--+|++.
T Consensus 50 k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~ 112 (128)
T d1ofcx2 50 KNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITL 112 (128)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHH
Confidence 3599999999999999999999 888763 22 222 2799999999999999874
No 20
>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=90.38 E-value=0.24 Score=38.40 Aligned_cols=49 Identities=20% Similarity=0.386 Sum_probs=38.5
Q ss_pred CCCCCHHHHHHHHHHHHhhCC------C--chhhhhhhhcccCCCCChhhHHHHHHHhhc
Q 006062 545 HRAWTLSEVMKLVEGVSKYGA------G--RWSEIKRLAFASYSYRTSVDLKDKWRNLLK 596 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG~------G--~W~~Ik~~~f~~f~~RT~VDLKDKWRNLlK 596 (662)
|.+||.+|+++|++=|.+|.. | =|++..+ ..++.+|-...||+|+.-+|
T Consensus 2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~---~~~~~HtwQSwrdRY~K~L~ 58 (59)
T d1fexa_ 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEK---SSLTQHSWQSLKDRYLKHLR 58 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHH---SCSSSCCSHHHHHHHHHHTC
T ss_pred CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHH---hcCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999853 1 3655542 34579999999999987665
No 21
>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}
Probab=49.26 E-value=8.1 Score=30.90 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=38.8
Q ss_pred CCCCCHHHHHHHHHHHHhhC---CCchhhhhhhhcccCCCCChhhHHHHHHHh
Q 006062 545 HRAWTLSEVMKLVEGVSKYG---AGRWSEIKRLAFASYSYRTSVDLKDKWRNL 594 (662)
Q Consensus 545 RRpWT~EEveaLv~GVekyG---~G~W~~Ik~~~f~~f~~RT~VDLKDKWRNL 594 (662)
-..|+.+|...|-.++.-+- .|-|.++.. ....||+-.|..||.--
T Consensus 8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~----~VGtRSaeECQ~ky~~~ 56 (73)
T d1wgxa_ 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAA----AVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHH----HTTTSCHHHHHHHHHHS
T ss_pred ccccCHHHHHHHHHHHHhcCCCCCccHHHHHH----HHccCCHHHHHHHHHhC
Confidence 45799999999999998654 689999983 35789999999999764
No 22
>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=34.10 E-value=25 Score=26.20 Aligned_cols=39 Identities=21% Similarity=0.435 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHHHHHhhCCCchhhhhhhhcccCCCCChhhHHH
Q 006062 547 AWTLSEVMKLVEGVSKYGAGRWSEIKRLAFASYSYRTSVDLKD 589 (662)
Q Consensus 547 pWT~EEveaLv~GVekyG~G~W~~Ik~~~f~~f~~RT~VDLKD 589 (662)
.|+..+=.+++.|.++||..+-..|+. .+.+.|.-+.+.
T Consensus 1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~----e~~~Kt~eEV~~ 39 (52)
T d1ofcx1 1 AWTKRDFNQFIKANEKYGRDDIDNIAK----DVEGKTPEEVIE 39 (52)
T ss_dssp TCCHHHHHHHHHHHHHHCTTCHHHHTT----SSTTCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHhhHHHHHH----HhcCCCHHHHHH
Confidence 399999999999999999988888873 346788877764
No 23
>d2fnaa1 a.4.5.11 (A:284-356) Hypothetical protein SSO1545, C-terminal domain {Sulfolobus solfataricus [TaxId: 2287]}
Probab=20.78 E-value=27 Score=27.63 Aligned_cols=59 Identities=17% Similarity=0.221 Sum_probs=39.1
Q ss_pred HHHHHHhhCCCchhhhhhhhcccCCCC--ChhhHHHHHHHhhccccCCCCCCccccccccCCCCCCChHHHHHH
Q 006062 556 LVEGVSKYGAGRWSEIKRLAFASYSYR--TSVDLKDKWRNLLKASLAQTPPDSRMGARKHASSVPIPMPVLLRV 627 (662)
Q Consensus 556 Lv~GVekyG~G~W~~Ik~~~f~~f~~R--T~VDLKDKWRNLlKas~~q~p~~~~~~~Rk~~~~~piP~~lL~RV 627 (662)
.+++|. .| .+|++|++.- ..-.+| +.--|..=-+||+|.++... .....-||.+++.++
T Consensus 11 ILkaia-~G-~rWs~IK~yl-e~~~G~~I~d~~ls~lL~nL~k~~~iek----------~~~~Y~i~DPv~~~a 71 (73)
T d2fnaa1 11 IMRTLS-KC-GKWSDVKRAL-ELEEGIEISDSEIYNYLTQLTKHSWIIK----------EGEKYCPSEPLISLA 71 (73)
T ss_dssp HHHHHT-TC-BCHHHHHHHH-HHHHCSCCCHHHHHHHHHHHHHTTSEEE----------SSSCEEESSHHHHHH
T ss_pred HHHHHH-cc-CcHHHHHHHH-HHHcCCCCChHHHHHHHHHHHHcCceee----------cCCeeccCcHHHHHh
Confidence 455665 56 5999999632 212244 56678888899999988721 113466888998876
Done!