BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006063
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 32.3 bits (72), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 527 ERSFEQQSVVSRTNV-----LLVQTLYFANQEKTEAAITELLVGLNYVWRYSRELNAKAL 581
ER +Q+++ S T++ + L FAN +++ A EL+ GL+ +++ S E KA
Sbjct: 150 ERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKAD 209
Query: 582 QE-CASSRMFEECLD 595
+ ++R+FEE LD
Sbjct: 210 ESFTKAARLFEEQLD 224
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 12/130 (9%)
Query: 436 AALALHYANVIIVIEKLV-ASPHLI-GHDAREDLYNMLPASVRATLRARLKPYTKSLASS 493
AA+ AN V++ ++ A+PH+ G +A LY + V +P+ S ++
Sbjct: 245 AAIGGAEANAFSVLQHVLGANPHVKRGLNATSSLYQAVAKGVH-------QPFDVSAFNA 297
Query: 494 VY-DTGLAGEWTAAMTAILEWLAPLAHNMIRWQSERSFEQQSVVSRTNVLLVQTLYFANQ 552
Y D+GL G +T + A + A+N ++ ++ + ++V + N L + Y +
Sbjct: 298 SYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGNVSNENVQAAKNKL--KAKYLMSV 355
Query: 553 EKTEAAITEL 562
E +E + E+
Sbjct: 356 ESSEGFLEEV 365
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 29.3 bits (64), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 61/130 (46%), Gaps = 12/130 (9%)
Query: 436 AALALHYANVIIVIEKLV-ASPHLI-GHDAREDLYNMLPASVRATLRARLKPYTKSLASS 493
AA+ AN V++ ++ A+PH+ G +A LY + V P+ S ++
Sbjct: 245 AAIGGAEANAFSVLQHVLGANPHVKRGLNATSSLYQAVAKGVH-------NPFDVSAFNA 297
Query: 494 VY-DTGLAGEWTAAMTAILEWLAPLAHNMIRWQSERSFEQQSVVSRTNVLLVQTLYFANQ 552
Y D+GL G +T + A + A+N ++ ++ + ++V + N L + Y +
Sbjct: 298 SYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQGNVSNENVQAAKNKL--KAKYLMSV 355
Query: 553 EKTEAAITEL 562
E +E + E+
Sbjct: 356 ESSEGFLEEV 365
>pdb|3I53|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I53|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah)
pdb|3I58|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I58|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
2-Hydroxy-7-Methoxy-5-Methyl Naphthoic Acid (Na)
pdb|3I5U|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I5U|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosylmethionine (Sam) And 2-Hydroxy-5-Methyl
Naphthoic Acid (Mna)
pdb|3I64|A Chain A, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
pdb|3I64|B Chain B, Crystal Structure Of An O-Methyltransferase (Ncsb1) From
Neocarzinostatin Biosynthesis In Complex With
S-Adenosyl-L- Homocysteine (Sah) And
1,4-Dihydroxy-2-Naphthoic Acid (Dhn)
Length = 332
Score = 29.3 bits (64), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
Query: 36 LMSKVVHLWQSLSDKQIARLRAEILNSVGIKKLVS--EDDEFIASLICAEMIENLAHVAK 93
++S V+H W LS I R AE S G+ ++ DE + + M+ +
Sbjct: 240 VLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGTGMDLRMLTYFGGKER 299
Query: 94 SVARLGKKCNDQGL 107
S+A LG+ GL
Sbjct: 300 SLAELGELAAQAGL 313
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.131 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,202,029
Number of Sequences: 62578
Number of extensions: 684767
Number of successful extensions: 1407
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1407
Number of HSP's gapped (non-prelim): 12
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)