BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 006063
         (662 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q06561|UNC52_CAEEL Basement membrane proteoglycan OS=Caenorhabditis elegans GN=unc-52
            PE=1 SV=2
          Length = 3375

 Score = 34.3 bits (77), Expect = 3.1,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 4/71 (5%)

Query: 131  WKKMEKKVKKMERFISI---NANLYQEMEMLSDHIQTLKRVKSNDGEIEHLIEFQKKVAW 187
            W+     V++ME +IS+   N +L+   E+       +   + +DG+ EH + F++K   
Sbjct: 3224 WQGQRPTVQQMEDYISVGIVNGHLHFSYELGGGAAHLISEERVDDGK-EHSVRFERKGRE 3282

Query: 188  KEQEVKNLREV 198
             +  + N REV
Sbjct: 3283 GQMRIDNYREV 3293


>sp|Q6BZH1|GRP78_DEBHA 78 kDa glucose-regulated protein homolog OS=Debaryomyces hansenii
           (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
           IGC 2968) GN=KAR2 PE=3 SV=1
          Length = 683

 Score = 32.7 bits (73), Expect = 9.4,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 51/123 (41%), Gaps = 12/123 (9%)

Query: 47  LSDKQIARLRAEILNSVGIKKLVSEDDEFIASLICAEMIENLAHVAKSVAR------LGK 100
           LS + I R+  E       +K   +D E  A +     +EN AH+ K   +      LG 
Sbjct: 552 LSKEDIDRMVEEA------EKYAEQDSELKAKIESRNSLENYAHMLKGQVKDESENGLGS 605

Query: 101 KCNDQGLKSFEIALDEFVNIGADPYGWEFSWKKMEKKVKKMERFISINANLYQEMEMLSD 160
           K ND   ++ + A+ E +    D Y    S +  E+K K ++    I + LY      +D
Sbjct: 606 KLNDDDKETLDDAIKETLEFIEDNYDSATSEEFEEQKQKLIDVASPITSKLYGGGAGGAD 665

Query: 161 HIQ 163
             Q
Sbjct: 666 EAQ 668


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.317    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 232,751,712
Number of Sequences: 539616
Number of extensions: 9251972
Number of successful extensions: 24299
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 24288
Number of HSP's gapped (non-prelim): 30
length of query: 662
length of database: 191,569,459
effective HSP length: 124
effective length of query: 538
effective length of database: 124,657,075
effective search space: 67065506350
effective search space used: 67065506350
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)