Query 006063
Match_columns 662
No_of_seqs 125 out of 146
Neff 3.7
Searched_HMMs 46136
Date Thu Mar 28 17:49:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006063.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006063hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05003 DUF668: Protein of un 100.0 1E-44 2.2E-49 316.3 8.4 89 432-523 1-89 (89)
2 PF11961 DUF3475: Domain of un 99.9 2.7E-27 5.8E-32 192.3 4.3 57 28-84 1-57 (57)
3 PF13094 CENP-Q: CENP-Q, a CEN 63.5 29 0.00062 33.5 7.4 65 128-198 19-84 (160)
4 PF05278 PEARLI-4: Arabidopsis 45.4 4.2E+02 0.0091 28.8 13.0 69 132-200 189-266 (269)
5 PF14182 YgaB: YgaB-like prote 41.3 97 0.0021 27.9 6.4 53 137-197 9-61 (79)
6 PF04859 DUF641: Plant protein 37.8 97 0.0021 30.1 6.3 32 142-173 41-72 (131)
7 PRK04778 septation ring format 32.2 1.5E+02 0.0034 34.3 8.0 89 107-195 174-275 (569)
8 PF01418 HTH_6: Helix-turn-hel 29.2 42 0.00092 28.6 2.2 67 35-112 2-68 (77)
9 COG0435 ECM4 Predicted glutath 26.9 2.1E+02 0.0046 31.5 7.3 71 62-167 135-223 (324)
10 KOG2991 Splicing regulator [RN 25.7 1.5E+02 0.0032 32.3 5.8 21 177-197 279-299 (330)
11 KOG3498 Preprotein translocase 24.8 69 0.0015 28.0 2.6 31 83-113 6-36 (67)
12 PF05983 Med7: MED7 protein; 24.2 4.5E+02 0.0098 26.0 8.6 101 60-197 52-152 (162)
13 PF04111 APG6: Autophagy prote 22.5 3.1E+02 0.0068 29.7 7.7 29 177-205 114-142 (314)
14 PF06160 EzrA: Septation ring 20.9 3.3E+02 0.0072 31.7 8.0 89 107-195 170-271 (560)
15 KOG1937 Uncharacterized conser 20.5 6.4E+02 0.014 29.6 9.7 84 136-228 356-462 (521)
No 1
>PF05003 DUF668: Protein of unknown function (DUF668); InterPro: IPR007700 This is a family of uncharacterised plant proteins of unknown function.
Probab=100.00 E-value=1e-44 Score=316.26 Aligned_cols=89 Identities=63% Similarity=1.039 Sum_probs=86.9
Q ss_pred CcchhhhhhhhhHHHHHHHHHhhCCCCCCCchHHHHhhhCchHHHHHHHhccCcccccccccccccchHHHHHHHHHHHH
Q 006063 432 TLGGAALALHYANVIIVIEKLVASPHLIGHDAREDLYNMLPASVRATLRARLKPYTKSLASSVYDTGLAGEWTAAMTAIL 511 (662)
Q Consensus 432 TLG~AgLALHYANVIi~IEkLv~~P~lIg~daRDdLY~MLP~svR~ALRakLk~~~k~~~~~v~D~~LA~eWk~am~kIL 511 (662)
|||+||||||||||||+||+|+++|++||+|+||+||||||++||++||+|||+++++ .+||+.+|+|||++|++||
T Consensus 1 tLG~AgLALhYANvI~~ie~l~~~p~~v~~~aRD~LY~mLP~~ir~aLr~kL~~~~~~---~~~d~~~a~~~~~~m~kiL 77 (89)
T PF05003_consen 1 TLGGAGLALHYANVIIQIEKLVSRPSSVPPNARDDLYQMLPPSIRSALRSKLRSYWKK---AIYDELLAAEWKDAMEKIL 77 (89)
T ss_pred CcchHHHHHHHHHHHHHHHHHHcCcccCCchHHHHHHhhCcHHHHHHHHHhccccccc---cccchhhHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999987 3799999999999999999
Q ss_pred hhhhhhhccccc
Q 006063 512 EWLAPLAHNMIR 523 (662)
Q Consensus 512 eWLaPlAHNmiR 523 (662)
+||+||||||||
T Consensus 78 ~WL~P~A~nt~r 89 (89)
T PF05003_consen 78 EWLAPMAHNTIR 89 (89)
T ss_pred HHHHHHHHhccC
Confidence 999999999997
No 2
>PF11961 DUF3475: Domain of unknown function (DUF3475); InterPro: IPR021864 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 60 amino acids in length. This domain is found associated with PF05003 from PFAM.
Probab=99.93 E-value=2.7e-27 Score=192.34 Aligned_cols=57 Identities=63% Similarity=1.008 Sum_probs=56.3
Q ss_pred EehhhHHHHHHHHHHHhhhcCHHHHHHHHHhhhcccccccccccChHHHHHHHHHHH
Q 006063 28 VLAFEVVSLMSKVVHLWQSLSDKQIARLRAEILNSVGIKKLVSEDDEFIASLICAEM 84 (662)
Q Consensus 28 ILAFEVAn~MSK~v~L~qSLSD~eI~rLR~eil~SeGV~~LVS~D~~~LL~LA~AEk 84 (662)
||||||||+|||++||||||||++|.+||+||++|+|||+|||+||+|||+||||||
T Consensus 1 ILAFEVAn~msk~~~L~~SLsd~~i~~Lr~evl~seGV~~LVS~D~~~LL~La~aE~ 57 (57)
T PF11961_consen 1 ILAFEVANTMSKLVNLWQSLSDEEIARLREEVLRSEGVRKLVSDDDSFLLRLACAEK 57 (57)
T ss_pred CccHHHHHHHHHHHHHHHHcChHHHHHHHHHHhhhHHHHHHcCCCHHHHHHHHHhcC
Confidence 899999999999999999999999999999999999999999999999999999996
No 3
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=63.45 E-value=29 Score=33.47 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=45.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhccCcc-hhHHHHHHHHHHHHHHhhhhhcc
Q 006063 128 EFSWKKMEKKVKKMERFISINANLYQEMEMLSDHIQTLKRVKSNDGEI-EHLIEFQKKVAWKEQEVKNLREV 198 (662)
Q Consensus 128 ~~~~k~me~kvkKMerlV~~Ta~LY~Eme~LaelEQ~~Rr~~~~~~~~-~~l~~lqqkv~~QRqeVk~LKe~ 198 (662)
.+..+.+-...+.+|+. |..+++.|+.|+..++|++..-+.. ..+..|++.++....+++...++
T Consensus 19 ~~~~e~ll~~~~~LE~q------L~~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~~~~ 84 (160)
T PF13094_consen 19 SFDYEQLLDRKRALERQ------LAANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEEEKK 84 (160)
T ss_pred cccHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34456666666666654 5588999999999999886544322 27888888888877777665543
No 4
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=45.44 E-value=4.2e+02 Score=28.77 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHhHhHHHHHHHHhhhhccC-cc-------hhHHHHHHHHHHHHHHhhhhhcccc
Q 006063 132 KKMEKKVKKMERFISIN-ANLYQEMEMLSDHIQTLKRVKSNDG-EI-------EHLIEFQKKVAWKEQEVKNLREVSL 200 (662)
Q Consensus 132 k~me~kvkKMerlV~~T-a~LY~Eme~LaelEQ~~Rr~~~~~~-~~-------~~l~~lqqkv~~QRqeVk~LKe~SL 200 (662)
+.++.+.+.++|.+... .+|=.++|-|++.|+.++.+++--. -. .....+.+.+..-+..|+++...||
T Consensus 189 ~~~e~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~~~sl 266 (269)
T PF05278_consen 189 ETREEEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEKFHGKSL 266 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 44555666666666655 6777788888888888876533221 01 1345666777777788888877776
No 5
>PF14182 YgaB: YgaB-like protein
Probab=41.29 E-value=97 Score=27.95 Aligned_cols=53 Identities=21% Similarity=0.397 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHhhhhhc
Q 006063 137 KVKKMERFISINANLYQEMEMLSDHIQTLKRVKSNDGEIEHLIEFQKKVAWKEQEVKNLRE 197 (662)
Q Consensus 137 kvkKMerlV~~Ta~LY~Eme~LaelEQ~~Rr~~~~~~~~~~l~~lqqkv~~QRqeVk~LKe 197 (662)
.|+-|++|. .|-+|||.--+.|..+..++... .+..++++|...|++++-+.+
T Consensus 9 Qm~tMD~LL----~LQsElERCqeIE~eL~~l~~ea----~l~~i~~EI~~mkk~Lk~Iq~ 61 (79)
T PF14182_consen 9 QMKTMDKLL----FLQSELERCQEIEKELKELEREA----ELHSIQEEISQMKKELKEIQR 61 (79)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHH
Confidence 456677654 57788888888888888776655 578889999999998887764
No 6
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=37.84 E-value=97 Score=30.08 Aligned_cols=32 Identities=13% Similarity=0.295 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHhhhhccC
Q 006063 142 ERFISINANLYQEMEMLSDHIQTLKRVKSNDG 173 (662)
Q Consensus 142 erlV~~Ta~LY~Eme~LaelEQ~~Rr~~~~~~ 173 (662)
|+..++-..+-.||+.|.+|-+.|++.+.+..
T Consensus 41 d~I~aAD~~vVsEL~~Ls~LK~~y~~~~~~~~ 72 (131)
T PF04859_consen 41 DKIQAADEAVVSELRRLSELKRRYRKKQSDPS 72 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 55666777888999999999999999877653
No 7
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=32.18 E-value=1.5e+02 Score=34.31 Aligned_cols=89 Identities=12% Similarity=0.247 Sum_probs=55.5
Q ss_pred ccchHHHHHHHhhcC--CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhH-----hHHHHHHHHhhhhcc---Cc--
Q 006063 107 LKSFEIALDEFVNIG--ADPYGWEFSWKKMEKKVKKMERFISINANLYQEMEM-----LSDHIQTLKRVKSND---GE-- 174 (662)
Q Consensus 107 l~~Fd~~f~~l~~~~--~d~~~~~~~~k~me~kvkKMerlV~~Ta~LY~Eme~-----LaelEQ~~Rr~~~~~---~~-- 174 (662)
|.+++.-|+.|..-. -|+-.-.--..+++..+..++.++..--.||+|+.. |++|+.+||+|.... +.
T Consensus 174 l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~~~iP~l~~~~~~~~P~ql~el~~gy~~m~~~gy~~~~~~ 253 (569)
T PRK04778 174 LENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIMEEIPELLKELQTELPDQLQELKAGYRELVEEGYHLDHLD 253 (569)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 445555555554311 132211112456677888888888888889998865 899999999997765 11
Q ss_pred -chhHHHHHHHHHHHHHHhhhh
Q 006063 175 -IEHLIEFQKKVAWKEQEVKNL 195 (662)
Q Consensus 175 -~~~l~~lqqkv~~QRqeVk~L 195 (662)
...+..++++++.=...+.+|
T Consensus 254 i~~~i~~l~~~i~~~~~~l~~l 275 (569)
T PRK04778 254 IEKEIQDLKEQIDENLALLEEL 275 (569)
T ss_pred hHHHHHHHHHHHHHHHHHHHhc
Confidence 125666666666644445544
No 8
>PF01418 HTH_6: Helix-turn-helix domain, rpiR family; InterPro: IPR000281 This domain contains a helix-turn-helix motif []. Every member of this family is N-terminal to a SIS domain IPR001347 from INTERPRO. Members of this family are probably regulators of genes involved in phosphosugar metobolism.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2O3F_B 3IWF_B.
Probab=29.23 E-value=42 Score=28.63 Aligned_cols=67 Identities=27% Similarity=0.385 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhcCHHHHHHHHHhhhcccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccchHH
Q 006063 35 SLMSKVVHLWQSLSDKQIARLRAEILNSVGIKKLVSEDDEFIASLICAEMIENLAHVAKSVARLGKKCNDQGLKSFEI 112 (662)
Q Consensus 35 n~MSK~v~L~qSLSD~eI~rLR~eil~SeGV~~LVS~D~~~LL~LA~AEkle~L~~~A~sVaRLG~rC~DP~l~~Fd~ 112 (662)
|...|+-..+..||+.|-. |-.-+-++.+.+..+-..|..+.+..--.+|.||.+++.=..++.|-.
T Consensus 2 ~l~~~i~~~~~~ls~~e~~-----------Ia~yil~~~~~~~~~si~elA~~~~vS~sti~Rf~kkLG~~gf~efk~ 68 (77)
T PF01418_consen 2 NLLEKIRSQYNSLSPTEKK-----------IADYILENPDEIAFMSISELAEKAGVSPSTIVRFCKKLGFSGFKEFKI 68 (77)
T ss_dssp -HHHHHHHHGGGS-HHHHH-----------HHHHHHH-HHHHCT--HHHHHHHCTS-HHHHHHHHHHCTTTCHHHHHH
T ss_pred cHHHHHHHHHhhCCHHHHH-----------HHHHHHhCHHHHHHccHHHHHHHcCCCHHHHHHHHHHhCCCCHHHHHH
Confidence 4567778888999988844 233344567777888899999999999999999999988555555543
No 9
>COG0435 ECM4 Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=26.87 E-value=2.1e+02 Score=31.51 Aligned_cols=71 Identities=23% Similarity=0.407 Sum_probs=43.8
Q ss_pred ccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccchHHHHHHHhhcCCCCCCcccchHHHHHHHHHH
Q 006063 62 SVGIKKLVSEDDEFIASLICAEMIENLAHVAKSVARLGKKCNDQGLKSFEIALDEFVNIGADPYGWEFSWKKMEKKVKKM 141 (662)
Q Consensus 62 SeGV~~LVS~D~~~LL~LA~AEkle~L~~~A~sVaRLG~rC~DP~l~~Fd~~f~~l~~~~~d~~~~~~~~k~me~kvkKM 141 (662)
-.--+++|+++-+.+++ -|...|+++.....|.+. ++...+|.++
T Consensus 135 Dk~~~tIVnNES~eIir------------------------------m~N~aFde~~~~~~dlyP-----~~Lr~eId~~ 179 (324)
T COG0435 135 DKKTQTIVNNESAEIIR------------------------------MFNSAFDEFGASAVDLYP-----EALRTEIDEL 179 (324)
T ss_pred ecCCCeeecCCcHHHHH------------------------------HHHHHHHHHhhhccccCC-----HHHHHHHHHH
Confidence 34457888888888876 345566666666556543 3344444444
Q ss_pred HHHH-------------HHHHHHHHH-----HhHhHHHHHHHHh
Q 006063 142 ERFI-------------SINANLYQE-----MEMLSDHIQTLKR 167 (662)
Q Consensus 142 erlV-------------~~Ta~LY~E-----me~LaelEQ~~Rr 167 (662)
...| +.|++-|.| -|+||+|||-+..
T Consensus 180 n~~Iy~~vNNGVYk~GFA~tq~aYeea~~~lF~~Ld~lE~~L~~ 223 (324)
T COG0435 180 NKWIYDTVNNGVYKAGFATTQEAYEEAVKKLFEALDKLEQILSE 223 (324)
T ss_pred HhhhcccccCceeeecccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4443 345566655 4788889987764
No 10
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=25.67 E-value=1.5e+02 Score=32.31 Aligned_cols=21 Identities=19% Similarity=0.438 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHhhhhhc
Q 006063 177 HLIEFQKKVAWKEQEVKNLRE 197 (662)
Q Consensus 177 ~l~~lqqkv~~QRqeVk~LKe 197 (662)
.+..||++++-.|+++.+|++
T Consensus 279 TiliLQq~Lketr~~Iq~l~k 299 (330)
T KOG2991|consen 279 TILILQQKLKETRKEIQRLKK 299 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999886
No 11
>KOG3498 consensus Preprotein translocase, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.79 E-value=69 Score=28.02 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHhhcccCCccccchHHH
Q 006063 83 EMIENLAHVAKSVARLGKKCNDQGLKSFEIA 113 (662)
Q Consensus 83 Ekle~L~~~A~sVaRLG~rC~DP~l~~Fd~~ 113 (662)
...|-+..|+++-.||-+||.-|..+.|-.+
T Consensus 6 ~~~~~~~~f~k~s~rf~krC~KPdrKEf~ki 36 (67)
T KOG3498|consen 6 QLVEPLRDFAKDSIRFVKRCTKPDRKEFTKI 36 (67)
T ss_pred HhcchHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 3567788999999999999999998887554
No 12
>PF05983 Med7: MED7 protein; InterPro: IPR009244 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This family consists of several eukaryotic proteins, which are homologues of the yeast MED7 protein. Activation of gene transcription in metazoans is a multistep process that is triggered by factors that recognise transcriptional enhancer sites in DNA. These factors work with co-activators such as MED7 to direct transcriptional initiation by the RNA polymerase II apparatus [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3FBI_C 3FBN_A 1YKH_A 1YKE_A.
Probab=24.23 E-value=4.5e+02 Score=26.03 Aligned_cols=101 Identities=19% Similarity=0.335 Sum_probs=42.7
Q ss_pred hcccccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccccchHHHHHHHhhcCCCCCCcccchHHHHHHHH
Q 006063 60 LNSVGIKKLVSEDDEFIASLICAEMIENLAHVAKSVARLGKKCNDQGLKSFEIALDEFVNIGADPYGWEFSWKKMEKKVK 139 (662)
Q Consensus 60 l~SeGV~~LVS~D~~~LL~LA~AEkle~L~~~A~sVaRLG~rC~DP~l~~Fd~~f~~l~~~~~d~~~~~~~~k~me~kvk 139 (662)
|.+.||+.|-..+++ .-.-.|..++|..+.++.- .+|=.+.+.+.. +|. ..++|++
T Consensus 52 L~~~gi~qLy~~~~~---~~~~~d~~~eLkkL~~sll-----------~nfleLl~~l~~---~P~-------~~~~ki~ 107 (162)
T PF05983_consen 52 LESQGIRQLYPPDDD---PSPSVDRKKELKKLNKSLL-----------LNFLELLDILSK---NPS-------QYERKIE 107 (162)
T ss_dssp ---------------------HHHHHHHHHHHHHHHH-----------HHHHHHTTSS------CC-------CHHHHHH
T ss_pred chhccccccCCCccc---cCCCchHHHHHHHHHHHHH-----------HHHHHHHHHHHh---CCc-------cHHHHHH
Confidence 778899888887722 2234677888888887753 344444443332 222 2344666
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHhhhhhc
Q 006063 140 KMERFISINANLYQEMEMLSDHIQTLKRVKSNDGEIEHLIEFQKKVAWKEQEVKNLRE 197 (662)
Q Consensus 140 KMerlV~~Ta~LY~Eme~LaelEQ~~Rr~~~~~~~~~~l~~lqqkv~~QRqeVk~LKe 197 (662)
.|..++.+. +|=+..+ |=-|+-+. -+..++..+..+|+++..+|+
T Consensus 108 ~i~~L~~Nm---hhllNey-------RPhQARet---Li~~me~Ql~~kr~~i~~i~~ 152 (162)
T PF05983_consen 108 DIRLLFINM---HHLLNEY-------RPHQARET---LIMMMEEQLEEKREEIEEIRK 152 (162)
T ss_dssp HHHHHHHHH---HHHHHHT-------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHHHHHh-------CHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 666554432 3222222 11111111 245667777778888877774
No 13
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=22.53 E-value=3.1e+02 Score=29.74 Aligned_cols=29 Identities=14% Similarity=0.424 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhccccccccH
Q 006063 177 HLIEFQKKVAWKEQEVKNLREVSLWNKTY 205 (662)
Q Consensus 177 ~l~~lqqkv~~QRqeVk~LKe~SLWnrTy 205 (662)
.+..++.++..-+.++..||+...+|.+|
T Consensus 114 e~~sl~~q~~~~~~~L~~L~ktNv~n~~F 142 (314)
T PF04111_consen 114 ERDSLKNQYEYASNQLDRLRKTNVYNDTF 142 (314)
T ss_dssp HHHHHHHHHHHHHHHHHCHHT--TTTTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCchhcee
Confidence 34566777778888999999999999887
No 14
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=20.87 E-value=3.3e+02 Score=31.71 Aligned_cols=89 Identities=17% Similarity=0.280 Sum_probs=59.0
Q ss_pred ccchHHHHHHHhhcC--CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHh-----HhHHHHHHHHhhhhcc---Cc--
Q 006063 107 LKSFEIALDEFVNIG--ADPYGWEFSWKKMEKKVKKMERFISINANLYQEME-----MLSDHIQTLKRVKSND---GE-- 174 (662)
Q Consensus 107 l~~Fd~~f~~l~~~~--~d~~~~~~~~k~me~kvkKMerlV~~Ta~LY~Eme-----~LaelEQ~~Rr~~~~~---~~-- 174 (662)
|.+++.-|+.|..-. -|+-.-.--..+++..+..++..+..--.||++++ -|++|+.+|++|.... +.
T Consensus 170 L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~~e~IP~l~~~l~~~~P~ql~eL~~gy~~m~~~gy~l~~~~ 249 (560)
T PF06160_consen 170 LENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEIMEDIPKLYKELQKEFPDQLEELKEGYREMEEEGYYLEHLD 249 (560)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHHHHHHHCCCCCCCCC
Confidence 445555555554321 13322122346778888999999999999999986 6999999999997765 11
Q ss_pred -chhHHHHHHHHHHHHHHhhhh
Q 006063 175 -IEHLIEFQKKVAWKEQEVKNL 195 (662)
Q Consensus 175 -~~~l~~lqqkv~~QRqeVk~L 195 (662)
...+..+++++..=...+++|
T Consensus 250 i~~~i~~i~~~l~~~~~~L~~l 271 (560)
T PF06160_consen 250 IEEEIEQIEEQLEEALALLKNL 271 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHcC
Confidence 125666666666666666655
No 15
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.53 E-value=6.4e+02 Score=29.58 Aligned_cols=84 Identities=25% Similarity=0.289 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHH------HHHHHHhhhhccCc--------chhHHHHHHHHHHHHHHhhhhhccccc
Q 006063 136 KKVKKMERFISINANLYQEMEMLSD------HIQTLKRVKSNDGE--------IEHLIEFQKKVAWKEQEVKNLREVSLW 201 (662)
Q Consensus 136 ~kvkKMerlV~~Ta~LY~Eme~Lae------lEQ~~Rr~~~~~~~--------~~~l~~lqqkv~~QRqeVk~LKe~SLW 201 (662)
++-+..++=+--.++||.|++-|++ ++|..+.+-+|-.- .+--.+||++...---. =
T Consensus 356 a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~---------L 426 (521)
T KOG1937|consen 356 AVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEA---------L 426 (521)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------H
Confidence 3333444445567789999999987 33333322111100 00122333333322222 2
Q ss_pred cccHHHHHHHH---------HHHHHHHHHHHHHhhC
Q 006063 202 NKTYDYTILLL---------ARSLFTLFGRIRHVFG 228 (662)
Q Consensus 202 nrTyD~vV~lL---------ARsV~tI~~RI~~VFG 228 (662)
+|+|-+|=++| ||-+.-++.+|...|-
T Consensus 427 ~Rsfavtdellf~sakhddhvR~aykllt~iH~nc~ 462 (521)
T KOG1937|consen 427 NRSFAVTDELLFMSAKHDDHVRLAYKLLTRIHLNCM 462 (521)
T ss_pred hhhHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHH
Confidence 57787777766 5566777888887774
Done!