Query 006063
Match_columns 662
No_of_seqs 125 out of 146
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 14:58:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006063.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006063hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hls_A Guanylate cyclase solub 54.6 5.1 0.00017 33.0 1.7 17 465-481 49-65 (66)
2 3ghg_A Fibrinogen alpha chain; 54.3 9.4 0.00032 42.7 4.3 47 177-229 118-164 (562)
3 1m1j_B Fibrinogen beta chain; 42.2 2.2E+02 0.0074 31.4 12.5 58 133-193 97-159 (464)
4 3mq9_A Bone marrow stromal ant 23.4 2.1E+02 0.0071 30.0 8.3 52 110-167 357-408 (471)
5 3twe_A Alpha4H; unknown functi 23.3 86 0.0029 21.7 3.4 13 148-160 3-15 (27)
6 1uk5_A BAG-family molecular ch 20.6 2.5E+02 0.0084 25.5 6.9 48 80-127 31-80 (111)
7 4aj5_A SKA1, spindle and kinet 20.4 1.5E+02 0.005 26.3 5.2 13 149-161 40-52 (91)
8 3oja_B Anopheles plasmodium-re 20.1 6.9E+02 0.024 26.6 11.7 19 178-196 546-564 (597)
9 3qh9_A Liprin-beta-2; coiled-c 20.0 1.8E+02 0.006 25.3 5.5 48 148-198 21-76 (81)
10 3f4m_A Tumor necrosis factor, 19.3 6E+02 0.021 24.3 13.0 55 81-167 12-73 (161)
No 1
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=54.57 E-value=5.1 Score=33.01 Aligned_cols=17 Identities=47% Similarity=0.679 Sum_probs=13.0
Q ss_pred HHHhhhCchHHHHHHHh
Q 006063 465 EDLYNMLPASVRATLRA 481 (662)
Q Consensus 465 DdLY~MLP~svR~ALRa 481 (662)
+=||+|||++|-..|+.
T Consensus 49 ~LL~~mLP~~VA~~Lk~ 65 (66)
T 3hls_A 49 TLLYSVLPPSVANELRH 65 (66)
T ss_dssp HHHHHTSCHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHhC
Confidence 55888888888877763
No 2
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.26 E-value=9.4 Score=42.67 Aligned_cols=47 Identities=19% Similarity=0.183 Sum_probs=37.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHhhCC
Q 006063 177 HLIEFQKKVAWKEQEVKNLREVSLWNKTYDYTILLLARSLFTLFGRIRHVFGI 229 (662)
Q Consensus 177 ~l~~lqqkv~~QRqeVk~LKe~SLWnrTyD~vV~lLARsV~tI~~RI~~VFG~ 229 (662)
.+..|+.+|..|-+.++.||. .+++.+.+|-|.=-.|-..|..-.|.
T Consensus 118 rIqyLKekVdnQlsnIrvLQs------nLedq~~kIQRLEvDIdiqirsCKgs 164 (562)
T 3ghg_A 118 RIEVLKRKVIEKVQHIQLLQK------NVRAQLVDMKRLEVDIDIKIRSCRGS 164 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 567778888888888888875 48888888888888888888888874
No 3
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=42.25 E-value=2.2e+02 Score=31.41 Aligned_cols=58 Identities=17% Similarity=0.269 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----hHh-HHHHHHHHhhhhccCcchhHHHHHHHHHHHHHHhh
Q 006063 133 KMEKKVKKMERFISINANLYQEM----EML-SDHIQTLKRVKSNDGEIEHLIEFQKKVAWKEQEVK 193 (662)
Q Consensus 133 ~me~kvkKMerlV~~Ta~LY~Em----e~L-aelEQ~~Rr~~~~~~~~~~l~~lqqkv~~QRqeVk 193 (662)
.+++.++.|+..|..-++...|. .+| +.+++..++++.+.. .+.+++.++..|.+.++
T Consensus 97 ~V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n---~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 97 TVKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDI---ILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhh---HHHHHHHHHHHHHHHHH
Confidence 35555555555555444444442 222 455555555555442 34455555555554444
No 4
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=23.38 E-value=2.1e+02 Score=29.98 Aligned_cols=52 Identities=6% Similarity=-0.081 Sum_probs=23.5
Q ss_pred hHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHh
Q 006063 110 FEIALDEFVNIGADPYGWEFSWKKMEKKVKKMERFISINANLYQEMEMLSDHIQTLKR 167 (662)
Q Consensus 110 Fd~~f~~l~~~~~d~~~~~~~~k~me~kvkKMerlV~~Ta~LY~Eme~LaelEQ~~Rr 167 (662)
+...+.++..|..++. +-++...+++++.+.....-....++=+.|+|.+-+
T Consensus 357 ~~~~~~~vl~G~~t~e------eal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~ 408 (471)
T 3mq9_A 357 VRTAVINAASGRQTVD------EALKDAQTRITAARDGLRAVMEARNVTHLLQQELTE 408 (471)
T ss_dssp HHHHHHHHHHSSSCHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHH------HHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHH
Confidence 4445556666666551 222333344444444433333344444444444433
No 5
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=23.30 E-value=86 Score=21.72 Aligned_cols=13 Identities=38% Similarity=0.705 Sum_probs=9.7
Q ss_pred HHHHHHHHhHhHH
Q 006063 148 NANLYQEMEMLSD 160 (662)
Q Consensus 148 Ta~LY~Eme~Lae 160 (662)
.-+||.|+|-|.|
T Consensus 3 adelykeledlqe 15 (27)
T 3twe_A 3 ADELYKELEDLQE 15 (27)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4589999887654
No 6
>1uk5_A BAG-family molecular chaperone regulator-3; triple helix bandle, CAIR-1, BIS, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.7.7.1
Probab=20.62 E-value=2.5e+02 Score=25.51 Aligned_cols=48 Identities=19% Similarity=0.231 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccccchHHHHHH--HhhcCCCCCCc
Q 006063 80 ICAEMIENLAHVAKSVARLGKKCNDQGLKSFEIALDE--FVNIGADPYGW 127 (662)
Q Consensus 80 A~AEkle~L~~~A~sVaRLG~rC~DP~l~~Fd~~f~~--l~~~~~d~~~~ 127 (662)
+..++..+++.++..|..|+.++.|-.+..|+.+... |.-.++|..|-
T Consensus 31 ~I~~I~~eV~~L~~qV~~f~g~k~dkey~~L~E~L~k~LLkLD~IeteG~ 80 (111)
T 1uk5_A 31 KVEAILEKVQGLEQAVDSFEGKKTDKKYLMIEEYLTKELLALDSVDPEGR 80 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTCCSCSSSHHHHHHHHHHHHHHHHHHSCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHCCcCcCCc
Confidence 5677888888999999999887899888777776665 34467787665
No 7
>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=20.35 E-value=1.5e+02 Score=26.26 Aligned_cols=13 Identities=8% Similarity=0.250 Sum_probs=8.8
Q ss_pred HHHHHHHhHhHHH
Q 006063 149 ANLYQEMEMLSDH 161 (662)
Q Consensus 149 a~LY~Eme~Lael 161 (662)
..+++|+-++.+|
T Consensus 40 ~Kig~Ei~~l~eL 52 (91)
T 4aj5_A 40 NKIGDEIIVINEL 52 (91)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3567777777665
No 8
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=20.14 E-value=6.9e+02 Score=26.62 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHhhhhh
Q 006063 178 LIEFQKKVAWKEQEVKNLR 196 (662)
Q Consensus 178 l~~lqqkv~~QRqeVk~LK 196 (662)
...+++++..+++.++.|+
T Consensus 546 ~~~le~~~~~~~~~~~~l~ 564 (597)
T 3oja_B 546 NIALEKQLDNKRAKQAELR 564 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhhhhhHHHHHH
Confidence 3444555555555544444
No 9
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=20.01 E-value=1.8e+02 Score=25.26 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=32.8
Q ss_pred HHHHHHHHhHh----HHHH----HHHHhhhhccCcchhHHHHHHHHHHHHHHhhhhhcc
Q 006063 148 NANLYQEMEML----SDHI----QTLKRVKSNDGEIEHLIEFQKKVAWKEQEVKNLREV 198 (662)
Q Consensus 148 Ta~LY~Eme~L----aelE----Q~~Rr~~~~~~~~~~l~~lqqkv~~QRqeVk~LKe~ 198 (662)
|-.|||||.-| .++| |-.+|++...+ -+..||+.+..+-.++++|++.
T Consensus 21 ~E~L~qEi~~Lr~kv~elEnErlQyEkKLKsTK~---El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 21 AEELLQELRHLKIKVEELENERNQYEWKLKATKA---EVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhHHHHHHHHHH
Confidence 33677777665 2333 44555655432 4788999999999999999763
No 10
>3f4m_A Tumor necrosis factor, alpha-induced protein 8- like protein 2; TIPE2, immune homeostasis, tnfaip8, immune system; 1.70A {Homo sapiens}
Probab=19.33 E-value=6e+02 Score=24.30 Aligned_cols=55 Identities=20% Similarity=0.305 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcccCCccccchHHHHHHHhhcCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHH-------
Q 006063 81 CAEMIENLAHVAKSVARLGKKCNDQGLKSFEIALDEFVNIGADPYGWEFSWKKMEKKVKKMERFISINANLYQ------- 153 (662)
Q Consensus 81 ~AEkle~L~~~A~sVaRLG~rC~DP~l~~Fd~~f~~l~~~~~d~~~~~~~~k~me~kvkKMerlV~~Ta~LY~------- 153 (662)
-+|.+++|-++++.+. .+.|+|++.+|.+.+.|--..-||+
T Consensus 12 sselLD~lyrl~K~~t--------------------------------~nkkeA~kv~KniIKi~vKigvl~rn~qf~~e 59 (161)
T 3f4m_A 12 SSEVLDELYRVSKEYT--------------------------------HSRPQAQRVIKDLIKVAIKVAVLHRNGSFGPS 59 (161)
T ss_dssp HHHHHHHHHHHHHHHH--------------------------------SCHHHHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred HHHHHHHHHHHHHHHh--------------------------------cCHHHHHHHHHHHHHHHHHhheeeecCCCCHH
Confidence 4677788887777765 1468999999999999999999985
Q ss_pred HHhHhHHHHHHHHh
Q 006063 154 EMEMLSDHIQTLKR 167 (662)
Q Consensus 154 Eme~LaelEQ~~Rr 167 (662)
|+..+++|-+.++.
T Consensus 60 El~~~~~fr~k~~~ 73 (161)
T 3f4m_A 60 ELALATRFRQKLRQ 73 (161)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766665554
Done!