Query 006065
Match_columns 662
No_of_seqs 247 out of 1501
Neff 7.9
Searched_HMMs 29240
Date Mon Mar 25 15:02:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006065.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006065hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jey_B KU80; double-strand DNA 100.0 4.6E-86 1.6E-90 748.9 55.0 506 1-527 1-551 (565)
2 1jey_A KU70; double-strand DNA 100.0 5.4E-80 1.8E-84 703.3 46.5 473 3-522 33-541 (609)
3 1rw2_A ATP-dependent DNA helic 99.9 1.5E-26 5.1E-31 213.1 9.3 95 559-656 27-129 (152)
4 1q2z_A ATP-dependent DNA helic 99.9 7.3E-26 2.5E-30 201.7 6.6 89 564-655 1-97 (120)
5 4b4t_W RPN10, 26S proteasome r 99.4 1.6E-12 5.4E-17 131.6 16.4 155 5-193 3-163 (268)
6 2x5n_A SPRPN10, 26S proteasome 99.4 5.7E-12 2E-16 122.3 16.3 162 5-201 2-173 (192)
7 3ibs_A Conserved hypothetical 99.2 9.8E-11 3.4E-15 115.5 15.3 164 5-200 11-197 (218)
8 3ism_C CG4930; endonuclease, e 99.2 2.9E-11 1E-15 119.2 9.2 91 560-651 24-134 (359)
9 1ijb_A VON willebrand factor; 99.1 7.4E-10 2.5E-14 108.2 15.7 164 5-201 13-181 (202)
10 2b2x_A Integrin alpha-1; compu 99.1 6.6E-10 2.3E-14 110.3 14.6 170 6-201 23-197 (223)
11 1pt6_A Integrin alpha-1; cell 99.1 1.6E-09 5.6E-14 106.5 15.8 171 5-202 7-183 (213)
12 1q0p_A Complement factor B; VO 99.1 3.3E-09 1.1E-13 104.7 17.9 170 5-205 15-209 (223)
13 1shu_X Anthrax toxin receptor 99.1 2.2E-09 7.7E-14 102.4 15.1 157 4-198 5-164 (182)
14 1v7p_C Integrin alpha-2; snake 99.0 2.7E-09 9.3E-14 103.8 15.0 170 5-201 6-181 (200)
15 1n3y_A Integrin alpha-X; alpha 99.0 6E-10 2.1E-14 108.0 10.3 166 6-202 10-180 (198)
16 3n2n_F Anthrax toxin receptor 99.0 3.7E-09 1.3E-13 101.2 15.6 159 6-200 8-168 (185)
17 4hqo_A Sporozoite surface prot 99.0 3E-09 1E-13 108.6 14.8 161 6-201 19-192 (266)
18 1atz_A VON willebrand factor; 99.0 7.3E-09 2.5E-13 99.8 16.3 159 5-199 5-168 (189)
19 4hqf_A Thrombospondin-related 99.0 3.5E-09 1.2E-13 108.9 13.9 151 5-190 21-180 (281)
20 2xgg_A Microneme protein 2; A/ 99.0 7.8E-09 2.7E-13 98.7 15.4 139 5-166 17-161 (178)
21 1mf7_A Integrin alpha M; cell 98.9 3.5E-09 1.2E-13 102.4 10.8 167 5-202 5-176 (194)
22 2odp_A Complement C2; C3/C5 co 98.9 1.1E-08 3.7E-13 114.2 16.0 169 5-203 9-201 (509)
23 4fx5_A VON willebrand factor t 98.8 6.1E-08 2.1E-12 106.6 18.1 158 5-203 77-245 (464)
24 2x31_A Magnesium-chelatase 60 98.8 3.5E-10 1.2E-14 109.0 -1.7 165 5-201 5-174 (189)
25 3ism_C CG4930; endonuclease, e 98.8 8.1E-09 2.8E-13 102.0 7.3 94 561-655 211-324 (359)
26 1rrk_A Complement factor B; BB 98.8 6.1E-08 2.1E-12 107.7 15.1 165 7-205 3-195 (497)
27 3hrz_D Complement factor B; se 98.8 6E-08 2.1E-12 113.2 15.4 166 7-202 245-434 (741)
28 3zqk_A VON willebrand factor; 98.7 2.8E-08 9.5E-13 96.7 9.1 153 6-201 22-179 (199)
29 3k6s_A Integrin alpha-X; cell 98.4 4.3E-07 1.5E-11 109.6 10.3 162 7-199 132-298 (1095)
30 1mjn_A Integrin alpha-L; rossm 98.4 8.6E-07 2.9E-11 84.5 10.3 158 6-201 3-165 (179)
31 1yvr_A RO autoantigen, 60-kDa 97.9 6.6E-05 2.2E-09 84.1 14.0 151 6-194 369-537 (538)
32 2nvo_A RO sixty-related protei 97.9 7.6E-05 2.6E-09 83.4 13.5 156 6-195 363-534 (535)
33 2ww8_A RRGA, cell WALL surface 97.7 0.00018 6E-09 84.7 13.1 123 7-133 226-392 (893)
34 3rag_A Uncharacterized protein 97.7 0.00017 5.9E-09 71.1 11.0 95 5-112 134-228 (242)
35 2iue_A Pactolus I-domain; memb 97.1 0.0034 1.2E-07 60.9 11.8 109 7-131 5-116 (212)
36 3rag_A Uncharacterized protein 96.5 0.0049 1.7E-07 60.8 7.4 65 120-198 10-74 (242)
37 3fcs_B Integrin beta-3; beta p 96.4 0.02 6.8E-07 65.3 13.2 152 8-163 114-310 (690)
38 3k6s_B Integrin beta-2; cell r 95.8 0.025 8.6E-07 64.4 10.0 150 8-162 107-299 (687)
39 1pcx_A Protein transport prote 95.8 0.062 2.1E-06 62.7 13.3 212 6-237 188-456 (810)
40 3vi3_B Integrin beta-1; beta p 95.7 0.1 3.6E-06 55.8 13.6 149 8-161 125-315 (454)
41 2nut_A Protein transport prote 95.7 0.37 1.3E-05 55.8 19.3 126 97-237 267-424 (769)
42 1m2v_B SEC24, protein transpor 95.1 0.16 5.3E-06 60.0 13.8 213 6-237 304-572 (926)
43 3t3p_B Integrin beta-3; integr 94.6 0.1 3.5E-06 56.3 9.4 149 8-160 114-307 (472)
44 3v4v_B Integrin beta-7; cell a 94.6 0.14 4.7E-06 55.5 10.5 152 7-164 134-329 (503)
45 1m2o_A SEC23, protein transpor 94.4 1.3 4.4E-05 51.3 18.9 127 97-237 261-418 (768)
46 3eh1_A Protein transport prote 93.1 0.95 3.3E-05 52.2 14.6 208 6-237 161-421 (751)
47 3efo_B SEC24 related gene fami 92.2 2.8 9.5E-05 48.5 17.0 211 6-237 178-443 (770)
48 3eh2_A Protein transport prote 92.1 3.4 0.00012 47.7 17.5 212 6-238 174-440 (766)
49 3si5_X Protein CASC5; BUBR1-bl 46.8 8.8 0.0003 22.7 1.4 12 629-640 10-21 (24)
50 3htk_C E3 SUMO-protein ligase 30.9 1.5E+02 0.005 29.3 8.2 83 571-654 21-119 (267)
51 2czy_A Paired amphipathic heli 29.9 61 0.0021 25.5 4.4 31 608-640 3-33 (77)
52 1e91_A Paired amphipathic heli 24.5 75 0.0025 25.5 4.1 30 609-640 7-36 (85)
53 2cr7_A Paired amphipathic heli 22.2 58 0.002 25.8 2.9 32 607-640 8-39 (80)
54 1g1e_B SIN3A; four-helix bundl 21.6 98 0.0034 25.0 4.3 31 608-640 9-39 (89)
55 2e6c_A 5'-nucleotidase SURE; S 20.0 1.7E+02 0.0057 28.5 6.3 33 124-165 3-35 (244)
No 1
>1jey_B KU80; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.2 c.62.1.4 PDB: 1jeq_B*
Probab=100.00 E-value=4.6e-86 Score=748.88 Aligned_cols=506 Identities=23% Similarity=0.389 Sum_probs=433.8
Q ss_pred CCC--CCeEEEEEEeCCCCcCC-------chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEE
Q 006065 1 MAR--TREALLLLLDVSPSMHS-------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKV 71 (662)
Q Consensus 1 ma~--~Kea~vflIDvs~sM~~-------~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v 71 (662)
||. +||++|||||+|+||++ .|+.|++++..++++||+++++|+||||+|||+.+.|+++.+ ++|+||++
T Consensus 1 ~~~~~~ke~iv~~iDvS~SM~~~d~~~~srl~~ak~~i~~~i~~ki~~~~~D~vGlv~f~~~~~~~plt~d-~~y~~i~v 79 (565)
T 1jey_B 1 MVRSGNKAAVVLCMDVGFTMSNSIPGIESPFEQAKKVITMFVQRQVFAENKDEIALVLFGTDGTDNPLSGG-DQYQNITV 79 (565)
T ss_dssp -----CCEEEEEEEECCGGGGCCBTTBCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTTCTT-TCSTTEEE
T ss_pred CCCCCCceEEEEEEECChHhcccCCCCCCcHHHHHHHHHHHHHHHhcCCCCCEEEEEEEccCCCCCccccc-cCCCceEE
Confidence 665 56999999999999986 378899999999999999999999999999999999998655 68999999
Q ss_pred EeccCCCCHHHHHHhhc-CCCCCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHH
Q 006065 72 LQDIKVVDGHLVQSLKH-LPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIAR 150 (662)
Q Consensus 72 ~~~l~~~~~~~l~~L~~-l~~~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~ 150 (662)
+++|+.++++.++.|.+ +..+...+++.+||++|+++|.+.+.+++..+|||||||||++|++. +++..+++
T Consensus 80 l~~l~~~~~~~l~~l~~~l~~~~~~t~i~~al~~A~~~l~~~~~~~k~~~krIiLlTDg~~~~~~-------~~~~~~a~ 152 (565)
T 1jey_B 80 HRHLMLPDFDLLEDIESKIQPGSQQADFLDALIVSMDVIQHETIGKKFEKRHIEIFTDLSSRFSK-------SQLDIIIH 152 (565)
T ss_dssp EEEEECCCHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHSSSSCCSEEEEEEECCCCSCCCC-------TTHHHHHH
T ss_pred eecCCCCCHHHHHHHHhhccCCCccccHHHHHHHHHHHHHHHhhcccccccEEEEEeCCCCCCCH-------HHHHHHHH
Confidence 99999999999999998 76665678999999999999987544444467999999999999853 57899999
Q ss_pred HHhhCCcEEE-EEeeccC-----CC----------------CCCCcchhhhhhHHHHHHhhccCC-----eeeehhchHH
Q 006065 151 QMVAFGLRMK-NIVVRAS-----LS----------------GEPHMRVIIENDNLLNIFSKKSSA-----KTLFVDSTTS 203 (662)
Q Consensus 151 ~l~~~gI~l~-vi~i~~~-----~~----------------~~~~~~~~~~ne~~L~~l~~~~~g-----~~~~~~~a~~ 203 (662)
.+++.||.|+ +||++.+ ++ ++........|+.+|+.+++.++| .+++++++++
T Consensus 153 ~l~~~gI~i~~vig~g~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~e~~L~~ia~~~~G~~~~s~~~~~~~~~~ 232 (565)
T 1jey_B 153 SLKKCDISLQFFLPFSLGKEDGSGDRGDGPFRLGGHGPSFPLKGITEQQKEGLEIVKMVMISLEGEDGLDEIYSFSESLR 232 (565)
T ss_dssp HHHHTTEEEEEEESSCCC----------CCCCTTCSSCCCCTTTSCHHHHHHHHHHHHHHHHHHCGGGGGGEEEHHHHTT
T ss_pred HHHhcCcEEEEEeccCCCcCCcccccccccccccccccccchhccccchhhhHHHHHHHHHhcCCCcccceeecHHHHHH
Confidence 9999999999 8887631 10 111112335789999999999999 8999999999
Q ss_pred hhcccccccCCcceeeeeeeeecCCeEEEEEEEeecccccC-CCceEeccCCCCCccccccceEEEEEEEecCCCCCCCC
Q 006065 204 LRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKKTGEEKF-PTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVP 282 (662)
Q Consensus 204 ll~~~~~k~~~~~~~~~g~L~ig~~l~I~V~~Y~~~~~~k~-p~~~~~~~~~~~~~~~~~~~v~~~~~y~~~~d~~~~v~ 282 (662)
++..++.+.++++ .|+|.|+||+.++|+|++|++|+++++ +.++....... ....|+.+++|+.+++++++|+
T Consensus 233 ~l~~~k~~~~r~~-~~~g~l~lg~~v~I~V~~Y~~~~~~~~~~~~~~l~~~~~-----~~~~V~~~~~y~v~~~~~~~V~ 306 (565)
T 1jey_B 233 KLCVFKKIERHSI-HWPCRLTIGSNLSIRIAAYKSILQERVKKTWTVVDAKTL-----KKEDIQKETVYCLNDDDETEVL 306 (565)
T ss_dssp SSTTTGGGCCCCC-CEEEEEEETTTEEEEEEEEEEECCCCCCCCCEEEETTTC-----CSTTEEEEEEEEESSSSCCEEC
T ss_pred HhccCcceeeccc-ccccceEECCCcEEEEEEEeeehhcccCCceEEecCccC-----CCcceEEEEEEEecCCCCcccC
Confidence 9999999888876 799999999889999999999999984 44433332210 1357999999965788999999
Q ss_pred ccccccceeeCCeeEeCChhhHHhhccCCC-ccEEEEeEeeCCCCcchhccCCe-EEEEcCCCChhhHHHHHHHHHHHHh
Q 006065 283 PEQRIKGYRYGPQVVPISSAEWEAVKFKPE-KSVKLLGFTDASNILRHYYMKDV-NLFIAEPGNSRATVAVSALARAMKE 360 (662)
Q Consensus 283 ~ed~~kgy~yG~~~Vp~s~~e~~~~k~~~~-~~l~ilGF~~~~~i~~~~~~~~~-~~i~p~~~~~~s~~afsaL~~Am~e 360 (662)
++|++|||+||+++|+|+++|++.+++.+. ++|+|+||++.++|+++|+++++ ||++|++++.+|..||+||++||.+
T Consensus 307 ~~di~kgy~yg~~~V~~~~ee~~~~~~~~~~~~l~ilgFv~~~~i~~~~~~~~s~y~l~p~~~~~~s~~af~aL~~al~~ 386 (565)
T 1jey_B 307 KEDIIQGFRYGSDIVPFSKVDEEQMKYKSEGKCFSVLGFCKSSQVQRRFFMGNQVLKVFAARDDEAAAVALSSLIHALDD 386 (565)
T ss_dssp GGGEEEEEEETTEEEECCHHHHHHHSCCCCCSEEEEEEEEEGGGSCGGGCEEEEEEEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred hHHeeeeEecCCeeeccCHHHHHHhcccCCCCcEEEEeeccHHHCCHhhccCCceEEEeCCCCChhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999875 99999999999999999999976 8999988888999999999999999
Q ss_pred cCceeEEEEEecCCCCceEEEEeeccccCCCCCCCeEEEecCCChhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHc
Q 006065 361 MNKVAIVRCVWRQGQQSVVVGVLTPNVSEKINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKML 440 (662)
Q Consensus 361 ~~~vaI~r~v~r~~~~p~~v~~L~P~~~~~~~~~~~l~~v~LPfaeDvR~~~fp~l~~~~~~~~p~~eq~~a~~~lI~~m 440 (662)
+++|||||||+|.++. |.+|+|+|+++.. ++||++++|||+||||.++||++... ....|+++|+++|++||++|
T Consensus 387 ~~kvaIar~v~r~~~~-p~l~aL~P~~~~~---~~gl~l~~Lpf~ddvR~~~f~~l~~~-~~~~~~~~~l~~a~~lId~m 461 (565)
T 1jey_B 387 LDMVAIVRYAYDKRAN-PQVGVAFPHIKHN---YECLVYVQLPFMEDLRQYMFSSLKNS-KKYAPTEAQLNAVDALIDSM 461 (565)
T ss_dssp TTEEEEEEEESSSSSC-CEEEEEEEEECSS---CEEEEEEECCCGGGBCCCCCCCSTTC-SSSCCCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEEEEcCCCC-cEEEEEeccccCC---CCeEEEEccCCHHHcccccCCCCCcc-ccCCCCHHHHHHHHHHHHhc
Confidence 9999999999999975 5577999997654 47999999999999999999998632 24579999999999999999
Q ss_pred CCCCCC-----CCccCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCchhhhhhcCCChHHHHHHHHHHHHHHhhcCCcc
Q 006065 441 DLAPSG-----KGEILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLAESQSAIDAFCGQFVIKE 515 (662)
Q Consensus 441 ~l~~~~-----~~e~~~p~~~~NP~lqr~~~~l~~~al~~~~~~p~~~~~l~~~~~p~~~~~~~~~~~l~~~k~~f~~~~ 515 (662)
+++..+ .++.|+|+.++||++||||++|+++|++++.|+|+++++|.++++||+.+.++++++|++|+++|++++
T Consensus 462 ~~~~~~~~~~~~~~~~~p~~~~np~lq~~~~~i~~kal~~~~~~p~~d~~l~~~~~p~~~~~~~~~~~l~~~k~~f~~~~ 541 (565)
T 1jey_B 462 SLAKKDEKTDTLEDLFPTTKIPNPRFQRLFQCLLHRALHPREPLPPIQQHIWNMLNPPAEVTTKSQIPLSKIKTLFPLIE 541 (565)
T ss_dssp BCEECCTTSSCCEESCCGGGSCCHHHHHHHHHHHHHHHCTTSCCCCCCHHHHHHHSCCHHHHHHHHHHHHHHHHHSCCEE
T ss_pred cCCcccccCcchhcccCcccCCCHHHHHHHHHHHHHhcCCCCCCCCcCHHHHhhcCCCHHHHHHHHHHHHHHHHhCCcee
Confidence 996311 123599999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhhc
Q 006065 516 NPKLKKSTRRFL 527 (662)
Q Consensus 516 ~~~k~~~~~~~~ 527 (662)
+ |+|+++..|
T Consensus 542 ~--~~k~~~~~~ 551 (565)
T 1jey_B 542 A--KKKDQVTAQ 551 (565)
T ss_dssp C--CCC------
T ss_pred h--hcccchhhH
Confidence 9 444445555
No 2
>1jey_A KU70; double-strand DNA break repair, non-homologous END-joining, protein/nucleic acid complex, alpha/beta domain, beta barrel; HET: DNA; 2.50A {Homo sapiens} SCOP: b.131.1.1 c.62.1.3 PDB: 1jeq_A* 3rzx_B
Probab=100.00 E-value=5.4e-80 Score=703.30 Aligned_cols=473 Identities=18% Similarity=0.247 Sum_probs=395.5
Q ss_pred CCCeEEEEEEeCCCCcCCc--------hhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEec
Q 006065 3 RTREALLLLLDVSPSMHSV--------LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQD 74 (662)
Q Consensus 3 ~~Kea~vflIDvs~sM~~~--------l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~ 74 (662)
++||+||||||||+||++. |+.|++++..++++||+++++|+||||+|||+.|+|++ .|+||+++++
T Consensus 33 ~~ke~ivf~IDvS~SM~~~d~~~~~srl~~a~~~v~~~i~~kii~~~~D~vGlVlfgt~~t~n~l-----~~d~i~v~~~ 107 (609)
T 1jey_A 33 SGRDSLIFLVDASKAMFESQSEDELTPFDMSIQCIQSVYISKIISSDRDLLAVVFYGTEKDKNSV-----NFKNIYVLQE 107 (609)
T ss_dssp -CEEEEEEEEECSGGGGCCCSSSSCCHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESCSSCBSTT-----CCTTEEEEEE
T ss_pred cCceEEEEEEECCHHHcCCCCCCCCChHHHHHHHHHHHHHHhhCCCCCCeEEEEEEccCCCCCcC-----CCCCeEEEec
Confidence 4799999999999999873 77899999999999999999999999999999999987 7999999999
Q ss_pred cCCCCHHHHHHhhcCCC-----------C-CCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCch
Q 006065 75 IKVVDGHLVQSLKHLPQ-----------G-TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKE 142 (662)
Q Consensus 75 l~~~~~~~l~~L~~l~~-----------~-~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~ 142 (662)
|+.|+++.++.|+++.. + ...+++.+||++|+++|.+ .+++..+|+|||||||++|++. +....
T Consensus 108 L~~~~~~~ik~l~~l~~~~~~~~~~~~~g~~~~t~l~daL~~a~~~f~~--~~~k~~~k~IiL~TDg~~p~~~--~~~~~ 183 (609)
T 1jey_A 108 LDNPGAKRILELDQFKGQQGQKRFQDMMGHGSDYSLSEVLWVCANLFSD--VQFKMSHKRIMLFTNEDNPHGN--DSAKA 183 (609)
T ss_dssp EECCCHHHHHHHHTTSHHHHHHHHHHHHCCSCCCCHHHHHHHHHHHHHT--CSSCEEEEEEEEEESCSCTTTT--CHHHH
T ss_pred CCCCCHHHHHHHHHHhhcccchhhhhhcCCCCCCCHHHHHHHHHHHHHh--hchhhcCCEEEEEcCCCCCCCC--chHHH
Confidence 99999999999999753 3 3567999999999999875 3344579999999999999874 11112
Q ss_pred hhHHHHHHHHhhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHh--------hccCCeeeehhchHHhhcccccccCC
Q 006065 143 DQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFS--------KKSSAKTLFVDSTTSLRGARKTRDIS 214 (662)
Q Consensus 143 ~~~~~ia~~l~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~--------~~~~g~~~~~~~a~~ll~~~~~k~~~ 214 (662)
.++..+|++|++.||+|++||++.+ +.+... .++..+. ....+..++ +.+++..++.|.++
T Consensus 184 ~~~~~~a~~l~~~gI~i~~igig~~--~~fd~~------~fy~~~~~~~~~~~~~~~~~~~~~---l~~ll~~i~~k~~~ 252 (609)
T 1jey_A 184 SRARTKAGDLRDTGIFLDLMHLKKP--GGFDIS------LFYRDIISIAEDEDLRVHFEESSK---LEDLLRKVRAKETR 252 (609)
T ss_dssp HHHHHHHHHHHHHTEEEEEEEBCCT--TCCCTT------TTGGGTCC--------CCCCCBCS---HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHhcCcEEEEEecCCC--Cccchh------hhhhhhhccccccchhcccCchhh---HHHHHHHHHhhhcc
Confidence 4789999999999999999999742 212111 1111111 011111223 35778888999999
Q ss_pred cceeeeeeeeecCCeEEEEEEEeecccccCCCceEeccCCCCCccccccceEEEEEEEecCCCCCCCCccccccceeeCC
Q 006065 215 PVTIFRGDLELSEKMKIKVWVYKKTGEEKFPTLKKYSDKAPSTDKFATHEVKVDYEYKSVEDPSKVVPPEQRIKGYRYGP 294 (662)
Q Consensus 215 ~~~~~~g~L~ig~~l~I~V~~Y~~~~~~k~p~~~~~~~~~~~~~~~~~~~v~~~~~y~~~~d~~~~v~~ed~~kgy~yG~ 294 (662)
+|++|+|+|+||+.++|+|++|++|+++++++++++.... ...|+++++|+ +++++++|+++|++|||+||+
T Consensus 253 ~R~~~~g~l~lg~~v~I~V~~Y~~t~~~~~~~~~~l~~~~-------~~~V~~~~~~~-~~~~g~~V~~~di~kgy~yg~ 324 (609)
T 1jey_A 253 KRALSRLKLKLNKDIVISVGIYNLVQKALKPPPIKLYRET-------NEPVKTKTRTF-NTSTGGLLLPSDTKRSQIYGS 324 (609)
T ss_dssp CCCSEEEEEESSSSCEEEEEEECSBCCCCCCCCEEEETTT-------TEEEEEEEEEE-ETTTCCBCCGGGEEEEEEETT
T ss_pred ceeeeeeeeEECCCCEEEEEEEeecccccCCCcEEEcccC-------CccceEEEEEE-eCCCCCccChhhceeeeeeCC
Confidence 9999999999998899999999999999877554443321 35788888998 578899999999999999999
Q ss_pred eeEeCChhhHHhhccCCCccEEEEeEeeCCCCcchhccCCeEEEEcCCC-ChhhHHHHHHHHHHHHhcCceeEEEEEecC
Q 006065 295 QVVPISSAEWEAVKFKPEKSVKLLGFTDASNILRHYYMKDVNLFIAEPG-NSRATVAVSALARAMKEMNKVAIVRCVWRQ 373 (662)
Q Consensus 295 ~~Vp~s~~e~~~~k~~~~~~l~ilGF~~~~~i~~~~~~~~~~~i~p~~~-~~~s~~afsaL~~Am~e~~~vaI~r~v~r~ 373 (662)
++|+|+++|++.++..++|+|+|+||+|.++|+++|+|+++|||+|++. ..+|..||+||++||.++++|||||||+|.
T Consensus 325 ~~V~~~~ee~~~~k~~~~~~i~ilgFv~~~~i~~~~~~~~~~~l~P~~~~~~~s~~afsaL~~al~~~~kvaIar~v~r~ 404 (609)
T 1jey_A 325 RQIILEKEETEELKRFDDPGLMLMGFKPLVLLKKHHYLRPSLFVYPEESLVIGSSTLFSALLIKCLEKEVAALCRYTPRR 404 (609)
T ss_dssp EEEEECHHHHHHTTCCSCSEEEEEEEEEGGGSCGGGCCSCCEEEEECTTTEETHHHHHHHHHHHHHHTTEEEEEEEECSS
T ss_pred eeeccCHHHHHHHhccCCCceEEEeecchHhCchhhccCCceEEecCCCCccchHHHHHHHHHHHHhcCcEEEEEEEecC
Confidence 9999999999999999999999999999999999999999999999874 357999999999999999999999999999
Q ss_pred CCCceEEEEeeccccC-----CCCCCCeEEEecCCChhcccCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCCCCCC
Q 006065 374 GQQSVVVGVLTPNVSE-----KINIPDSFYFNVLPFAEDVREFQFPSFSKFPVSWQPNEQQQEAADNLVKMLDLAPSGKG 448 (662)
Q Consensus 374 ~~~p~~v~~L~P~~~~-----~~~~~~~l~~v~LPfaeDvR~~~fp~l~~~~~~~~p~~eq~~a~~~lI~~m~l~~~~~~ 448 (662)
++. |.+++|+|+.+. .+..|+||++++|||+||||.++||+ ...|+++|+++|++||++|+++
T Consensus 405 ~~~-p~l~aL~P~~~~~d~~~~q~~~~gl~l~~Lpf~ddvR~~~f~~------~~~~~~~~l~~a~~lI~~m~~~----- 472 (609)
T 1jey_A 405 NIP-PYFVALVPQEEELDDQKIQVTPPGFQLVFLPFADDKRKMPFTE------KIMATPEQVGKMKAIVEKLRFT----- 472 (609)
T ss_dssp SCC-CEEEEEEEECCEECTTCCEEECSEEEEEECCCGGGBCCCCCCC------CCCCCHHHHHHHHHHHHHTBCC-----
T ss_pred CCC-CEEEEEeCccccccccCCcCCCCeeEEEecCccccccCCCCcc------cCCCCHHHHHHHHHHHHhcccC-----
Confidence 975 557789999762 11246799999999999999999864 3479999999999999999997
Q ss_pred ccCCCCCCCCchhHHHHHHHHHhhcCCCCCCCCCchhhhhhcCCChHHHH-HHHHHHHHHHhh-cCCccCCCcccc
Q 006065 449 EILQPELTPNPALERFYHHLELKSEHQDAAPPPLDDSLKKITEPDPTLLA-ESQSAIDAFCGQ-FVIKENPKLKKS 522 (662)
Q Consensus 449 e~~~p~~~~NP~lqr~~~~l~~~al~~~~~~p~~~~~l~~~~~p~~~~~~-~~~~~l~~~k~~-f~~~~~~~k~~~ 522 (662)
|+|+.++||++||||++|+++|++++.|+|+.|++ .|+.+.++ +++++|++|+++ |++++++.+++.
T Consensus 473 --~~p~~~~np~lq~~~~~i~a~al~~~~~~~~~d~t-----~p~~~~~~~~~~~~~~~~k~~~f~~~~~~~~~~~ 541 (609)
T 1jey_A 473 --YRSDSFENPVLQQHFRNLEALALDLMEPEQAVDLT-----LPKVEAMNKRLGSLVDEFKELVYPPDYNPEGKVT 541 (609)
T ss_dssp --CCTTSCCCHHHHHHHHHHHHHHTTCSSCCCCCCTT-----SCCHHHHHHHHTTHHHHHHHHHSCSCC-------
T ss_pred --CCcccCCCHHHHHHHHHHHHHhcCCCCCCCCCCcc-----cCCHHHHHHHHHHHHHHHHHhhccccccchhccc
Confidence 99999999999999999999999999999887764 47777775 789999999998 999998876543
No 3
>1rw2_A ATP-dependent DNA helicase II, 80 kDa subunit; KU80, NHEJ, structure, DNA-PK, DNA binding protein; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=99.93 E-value=1.5e-26 Score=213.10 Aligned_cols=95 Identities=19% Similarity=0.363 Sum_probs=89.9
Q ss_pred ceeeecCCChHhHHHHHHhCCCCchHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHhhhhhchhHHHHHHHH
Q 006065 559 TVDKIGDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQVYLSVSFFLLW 638 (662)
Q Consensus 559 ~~~~ig~~~pv~dF~~~l~~~~~~~~~~~a~~qm~~~I~~lv~~s~~~~~y~ka~~~l~~~R~~~i~~~e~~~~N~fl~~ 638 (662)
.++.||++|||+||++||++++. .|++|++||+++|++||.+| |+.+|+||+|||++||++||.++||..||+||++
T Consensus 27 ~v~~Ig~~nPv~DFk~lL~~~~~--~~~~A~~qM~~vI~~Ll~~s-~~~~y~KA~ecL~~lR~~~i~~~ep~~yN~Fl~~ 103 (152)
T 1rw2_A 27 SVTSVGSVNPAENFRVLVKQKKA--SFEEASNQLINHIEQFLDTN-ETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKA 103 (152)
T ss_dssp SSCSSSSSCTTHHHHHHHHSSSS--CHHHHHHHHHHHHHHHHHSS-CSHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred CCceeCCCCcHHHHHHHHHcCch--hHHHHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Confidence 37999999999999999999753 39999999999999999988 9999999999999999999999999999999999
Q ss_pred HH--------HHHhhccccCCceeEE
Q 006065 639 FA--------FAFWDNSCLNDMSSIV 656 (662)
Q Consensus 639 lk--------~~fW~~~~~~~~~~~~ 656 (662)
|| .+||+.++.+++|+|.
T Consensus 104 LK~~l~~~~l~~FW~~Iv~~~lgLI~ 129 (152)
T 1rw2_A 104 LQEKVEIKQLNHFWEIVVQDGITLIT 129 (152)
T ss_dssp HHHHHHHSCCHHHHHHHHHHTCSSCS
T ss_pred HHHHHHhhhHHHHHHHHHHCCccccc
Confidence 98 6999999999999984
No 4
>1q2z_A ATP-dependent DNA helicase II, 80 kDa subunit; KU, DNA repair, protein structure, spectroscopy, DNA-PK, KU86, KU80, protein binding; NMR {Homo sapiens} SCOP: a.118.19.1
Probab=99.92 E-value=7.3e-26 Score=201.73 Aligned_cols=89 Identities=19% Similarity=0.352 Sum_probs=85.0
Q ss_pred cCCChHhHHHHHHhCCCCchHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHhhhhhchhHHHHHHHHHH---
Q 006065 564 GDLTPIQDFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENSNEGINYPKAVELLVALRKGCILEQVYLSVSFFLLWFA--- 640 (662)
Q Consensus 564 g~~~pv~dF~~~l~~~~~~~~~~~a~~qm~~~I~~lv~~s~~~~~y~ka~~~l~~~R~~~i~~~e~~~~N~fl~~lk--- 640 (662)
|++|||+||++||++++. .|++|++||+++|++||.+| |+.+|+||++||++||++||.++||..||+||++||
T Consensus 1 G~~nPv~DFk~ll~~~~~--~~~~A~~qm~~vI~~Ll~~s-~~~~y~ka~ecl~~~R~~~i~~~ep~~yN~Fl~~Lk~~~ 77 (120)
T 1q2z_A 1 GPVNPAENFRVLVKQKKA--SFEEASNQLINHIEQFLDTN-ETPYFMKSIDCIRAFREEAIKFSEEQRFNNFLKALQEKV 77 (120)
T ss_dssp CCCCHHHHHHHHTSSSCC--TTTHHHHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHcCch--hHHHHHHHHHHHHHHHHhCc-ccchHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 899999999999999753 49999999999999999988 999999999999999999999999999999999998
Q ss_pred -----HHHhhccccCCceeE
Q 006065 641 -----FAFWDNSCLNDMSSI 655 (662)
Q Consensus 641 -----~~fW~~~~~~~~~~~ 655 (662)
.+||+.++.+++|+|
T Consensus 78 ~~~~l~~FW~~iv~~~lgLI 97 (120)
T 1q2z_A 78 EIKQLNHFWEIVVQDGITLI 97 (120)
T ss_dssp HTTSTTHHHHHHHHTTCCSC
T ss_pred HhhhHHHHHHHHHHCCcCCC
Confidence 699999999999998
No 5
>4b4t_W RPN10, 26S proteasome regulatory subunit RPN10; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.44 E-value=1.6e-12 Score=131.61 Aligned_cols=155 Identities=15% Similarity=0.133 Sum_probs=119.5
Q ss_pred CeEEEEEEeCCCCcCC------chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC
Q 006065 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (662)
Q Consensus 5 Kea~vflIDvs~sM~~------~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~ 78 (662)
-||||||||+|.||.. .++.+++++..+++.+.-.++.|+||||.|+++. ..++.++..-
T Consensus 3 lEAtViviD~S~SM~~~D~~PsRl~a~k~Av~~li~~~~~~nPed~VGLVtfag~~--------------~~vl~plT~D 68 (268)
T 4b4t_W 3 LEATVLVIDNSEYSRNGDFPRTRFEAQIDSVEFIFQAKRNSNPENTVGLISGAGAN--------------PRVLSTFTAE 68 (268)
T ss_dssp CEEEEEEECCSSTTSSTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTS--------------CEEEEEEESC
T ss_pred ceeEEEEEECCHHHhCCCCCCcHHHHHHHHHHHHHHHHhhCCCcceEEEEEecCCc--------------ceeccCCcch
Confidence 5899999999999975 2677788888888877778899999999998652 1245566554
Q ss_pred CHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcE
Q 006065 79 DGHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 158 (662)
Q Consensus 79 ~~~~l~~L~~l~~~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~ 158 (662)
....+..|..+..+. ..++..||-+|+..+..+ ..+...+||||||+++... ..+.+..+++.+++.||.
T Consensus 69 ~~~il~aL~~l~~~G-~T~l~~gL~~A~~aLk~~--~~k~~~~rIIlf~ds~~~~-------~~~~l~~lak~lkk~gI~ 138 (268)
T 4b4t_W 69 FGKILAGLHDTQIEG-KLHMATALQIAQLTLKHR--QNKVQHQRIVAFVCSPISD-------SRDELIRLAKTLKKNNVA 138 (268)
T ss_dssp HHHHHHHHTTCCCCS-CCCHHHHHHHHHHHHHTC--SCTTSEEEEEEEECSCCSS-------CHHHHHHHHHHHHHHTEE
T ss_pred HHHHHHHhhhcCcCC-CCChHHHHHHHHHHHHhc--ccCCCceEEEEEECCCCCC-------CHHHHHHHHHHHHHcCCE
Confidence 455778888887653 458899999999998753 2345688999999987653 246799999999999999
Q ss_pred EEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCC
Q 006065 159 MKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA 193 (662)
Q Consensus 159 l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g 193 (662)
|.+|+++. ++ .|+..|..|++..+|
T Consensus 139 v~vIgFG~---~~-------~n~~kLe~l~~~~Ng 163 (268)
T 4b4t_W 139 VDIINFGE---IE-------QNTELLDEFIAAVNN 163 (268)
T ss_dssp EEEEEESS---CC-------SSCCHHHHHHHHHCS
T ss_pred EEEEEeCC---Cc-------cchHHHHHHHHHhcC
Confidence 99999964 11 245778888877654
No 6
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=99.39 E-value=5.7e-12 Score=122.29 Aligned_cols=162 Identities=15% Similarity=0.221 Sum_probs=115.4
Q ss_pred CeEEEEEEeCCCCcCC------chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC
Q 006065 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (662)
Q Consensus 5 Kea~vflIDvs~sM~~------~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~ 78 (662)
+|++|||||+|.||.. .++.+++++..++..++-.++.|+||||.|+++. .| ++.|+..-
T Consensus 2 ~e~lvlvlD~S~SM~~~D~~psRl~~ak~~~~~~~~~~~~~~~~d~vGLV~fa~~~----------a~----~~~plT~d 67 (192)
T 2x5n_A 2 LEATMILIDNSEWMINGDYIPTRFEAQKDTVHMIFNQKINDNPENMCGLMTIGDNS----------PQ----VLSTLTRD 67 (192)
T ss_dssp CEEEEEEECCSGGGGCTTSSSCHHHHHHHHHHHHHHHHHHHCTTCEEEEEECCTTS----------CC----EEEEEESC
T ss_pred ceEEEEEEECCHhhccCCCCCCHHHHHHHHHHHHHHHHHhcCCCCeEEEEEEcCCC----------cE----EecCCCCC
Confidence 6899999999999975 3677889999988888878999999999999852 11 34566554
Q ss_pred CHHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcE
Q 006065 79 DGHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 158 (662)
Q Consensus 79 ~~~~l~~L~~l~~~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~ 158 (662)
....+..|.++..+. ..++.+||..|.++|.+. .. +...+||++|++++... +..++..+++.+++.||+
T Consensus 68 ~~~i~~~L~~l~~~g-~t~l~~aL~~A~~~l~~~-~~-~~~~~riiil~~~~~~~-------~~~~~~~~a~~lk~~gi~ 137 (192)
T 2x5n_A 68 YGKFLSAMHDLPVRG-NAKFGDGIQIAQLALKHR-EN-KIQRQRIVAFVGSPIVE-------DEKNLIRLAKRMKKNNVA 137 (192)
T ss_dssp HHHHHHHHTTCCCCS-CCCHHHHHHHHHHHHHTC-SC-TTSEEEEEEEECSCCSS-------CHHHHHHHHHHHHHTTEE
T ss_pred HHHHHHHHHcCCCCC-CchHHHHHHHHHHHHHhc-cc-cCCCceEEEEEECCCCC-------CchhHHHHHHHHHHCCCE
Confidence 445677788876543 468899999999998652 21 23455666665543321 236788899999999999
Q ss_pred EEEEeeccCCCCCCCcchhhhhhHHHHHHhhccC----Ceeeehhch
Q 006065 159 MKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSS----AKTLFVDST 201 (662)
Q Consensus 159 l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~----g~~~~~~~a 201 (662)
+.+|+++.. + .|+. |+.|++..+ +.|.++...
T Consensus 138 v~~Ig~G~~---~-------~~~~-l~~la~~~n~~~~s~~~~~~~~ 173 (192)
T 2x5n_A 138 IDIIHIGEL---Q-------NESA-LQHFIDAANSSDSCHLVSIPPS 173 (192)
T ss_dssp EEEEEESCC-------------CH-HHHHHHHHCSTTCCEEEEECCC
T ss_pred EEEEEeCCC---C-------ccHH-HHHHHHhccCCCceEEEEecCc
Confidence 999999651 1 2446 888888753 345554443
No 7
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=9.8e-11 Score=115.47 Aligned_cols=164 Identities=20% Similarity=0.195 Sum_probs=116.1
Q ss_pred CeEEEEEEeCCCCcCC------chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC
Q 006065 5 REALLLLLDVSPSMHS------VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (662)
Q Consensus 5 Kea~vflIDvs~sM~~------~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~ 78 (662)
.-.++||||+|.||.. .++.++..+..++. ..++|+||||.|++.. .++.|+..-
T Consensus 11 ~~~iv~vlD~SgSM~~~d~~~~r~~~ak~~~~~~~~----~~~~~~v~lv~F~~~~---------------~~~~~~~~~ 71 (218)
T 3ibs_A 11 GVEVIIALDISNSMLAQDVQPSRLEKAKRLISRLVD----ELDNDKVGMIVFAGDA---------------FTQLPITSD 71 (218)
T ss_dssp CCEEEEEEECSGGGGCCSSSSCHHHHHHHHHHHHHH----TCSSCEEEEEEESSSE---------------EEEEEEESC
T ss_pred CCcEEEEEECCcCcccccCCcCHHHHHHHHHHHHHH----hCCCCeEEEEEECCCc---------------eEeCCCCCC
Confidence 4568999999999986 46778888888887 5679999999998751 234455442
Q ss_pred CHHHHHHhhcCCCC---CCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhC
Q 006065 79 DGHLVQSLKHLPQG---TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAF 155 (662)
Q Consensus 79 ~~~~l~~L~~l~~~---~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~ 155 (662)
.......|..+... .+..++.+||..|.+++.. .....+.|||||||....+ .+...++.+++.
T Consensus 72 ~~~~~~~l~~l~~~~~~~g~T~l~~al~~a~~~l~~----~~~~~~~ivllTDG~~~~~---------~~~~~~~~~~~~ 138 (218)
T 3ibs_A 72 YISAKMFLESISPSLISKQGTAIGEAINLATRSFTP----QEGVGRAIIVITDGENHEG---------GAVEAAKAAAEK 138 (218)
T ss_dssp HHHHHHHHHTCCGGGCCSCSCCHHHHHHHHHTTSCS----CSSCCEEEEEEECCTTCCS---------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCcccCCCCCCcHHHHHHHHHHHHhh----CCCCCcEEEEEcCCCCCCC---------cHHHHHHHHHhc
Confidence 23344456666542 2345788999999887543 2245789999999977532 367788899999
Q ss_pred CcEEEEEeeccC------CCC--------CCCcchhhhhhHHHHHHhhccCCeeeehhc
Q 006065 156 GLRMKNIVVRAS------LSG--------EPHMRVIIENDNLLNIFSKKSSAKTLFVDS 200 (662)
Q Consensus 156 gI~l~vi~i~~~------~~~--------~~~~~~~~~ne~~L~~l~~~~~g~~~~~~~ 200 (662)
||.+.+|+++.. +.+ .+.......++..|+.++..++|.++.+.+
T Consensus 139 ~i~v~~igig~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~L~~iA~~~gG~~~~~~~ 197 (218)
T 3ibs_A 139 GIQVSVLGVGMPEGAPIPVEGTNDYRRDREGNVIVTRLNEGMCQEIAKDGKGIYVRVDN 197 (218)
T ss_dssp TEEEEEEEESCTTCEECBCTTSSCBCBCTTSCBCEECCCHHHHHHHHHHTEEEEEEECS
T ss_pred CCEEEEEEecCCCCCcccccCCCceeEcCCCCEeEecCCHHHHHHHHHhcCCEEEECCC
Confidence 999999999741 000 001111245678999999999999887665
No 8
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=99.20 E-value=2.9e-11 Score=119.23 Aligned_cols=91 Identities=19% Similarity=0.292 Sum_probs=79.6
Q ss_pred eeeecCCChHhHHHHHHhCCCC----------chHHHHHHHHHHHHHHHhhccCCCC--CchHHHHHHHHHHHHHhhhhh
Q 006065 560 VDKIGDLTPIQDFEAMMSRRDC----------PDWVDKAIEDMKNKIFGLLENSNEG--INYPKAVELLVALRKGCILEQ 627 (662)
Q Consensus 560 ~~~ig~~~pv~dF~~~l~~~~~----------~~~~~~a~~qm~~~I~~lv~~s~~~--~~y~ka~~~l~~~R~~~i~~~ 627 (662)
...||.++|++||+++|.+... ...|++..+||+++|.+||.++... ..|.||.|.|+.+|..| .+.
T Consensus 24 ~~~IGl~~PaeDYk~LL~~~v~~~~ivnd~~~~~~Fq~IaaqaR~VIw~LLF~~~~~~~e~~eKa~ELL~eYR~da-~Fy 102 (359)
T 3ism_C 24 DYTIGLVDPVKDYQKLIETRVQVDEIVDDDVTKENFDRTAAAARDVIWRLLFDEAGTSQSNTEKASQLLEEYRGDA-CFY 102 (359)
T ss_dssp CCCCCSSSHHHHHHHHHHHHTSCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred ceeeecCCcHHHHHHHHHHHHhhccccCchHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHHHHHHhcc-ccC
Confidence 3679999999999999986322 2579999999999999999988543 24899999999999999 899
Q ss_pred chhHHHHHHHHHH--------HHHhhccccCC
Q 006065 628 VYLSVSFFLLWFA--------FAFWDNSCLND 651 (662)
Q Consensus 628 e~~~~N~fl~~lk--------~~fW~~~~~~~ 651 (662)
.|-.||+|+-+|| .+||+.+++++
T Consensus 103 ~P~eYNEWIvkLRdelLkR~lleFW~dvIVkk 134 (359)
T 3ism_C 103 DPTPYNEWIVKLRDEVLKKELLDFWRDVLVKK 134 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 79999998864
No 9
>1ijb_A VON willebrand factor; dinucleotide-binding fold, blood clotting; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 1ijk_A 1auq_A 1u0n_A 3hxo_A 1uex_C 3hxq_A 1sq0_A 1m10_A 1fns_A 1oak_A 1u0o_C
Probab=99.13 E-value=7.4e-10 Score=108.22 Aligned_cols=164 Identities=10% Similarity=0.113 Sum_probs=113.0
Q ss_pred CeEEEEEEeCCCCcCC-chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC-CH-H
Q 006065 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-DG-H 81 (662)
Q Consensus 5 Kea~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~-~~-~ 81 (662)
.--++|+||.|.||.. .++.++..+..++.+.-++..+++||||.|++.. .+..++... +. .
T Consensus 13 ~~divfvlD~SgSm~~~~~~~~k~~~~~~v~~l~~~~~~~rv~vv~fs~~~---------------~~~~~l~~~~~~~~ 77 (202)
T 1ijb_A 13 LLDLVFLLDGSSRLSEAEFEVLKAFVVDMMERLRVSQKWVRVAVVEYHDGS---------------HAYIGLKDRKRPSE 77 (202)
T ss_dssp CEEEEEEEECBTTSCHHHHHHHHHHHHHHHHTBCBSTTSEEEEEEEESSSE---------------EEEECTTCCCCHHH
T ss_pred cccEEEEEECCCCCCHHHHHHHHHHHHHHHHhcccCCCceEEEEEEECCCc---------------eEEEecCCCCCHHH
Confidence 3458999999999985 5778888888888855445678999999999762 123455432 32 3
Q ss_pred HHHHhhcCCCCCC-CCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEE
Q 006065 82 LVQSLKHLPQGTC-AGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (662)
Q Consensus 82 ~l~~L~~l~~~~~-~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~ 160 (662)
..+.|+++....+ ..++..||..|.+.+... +.+....|.|||||||.+.-. ..+.+...++.+++.||.+.
T Consensus 78 ~~~~i~~l~~~gg~~T~~~~aL~~a~~~~~~~-~~r~~~~~~iillTDG~~~~~------~~~~~~~~a~~l~~~gi~i~ 150 (202)
T 1ijb_A 78 LRRIASQVKYAGSQVASTSEVLKYTLFQIFSK-IDRPEASRIALLLMASQEPQR------MSRNFVRYVQGLKKKKVIVI 150 (202)
T ss_dssp HHHHHHTCCCCCBSCCCHHHHHHHHHHHTSSS-CSCTTSEEEEEEEECCCCCGG------GCTTHHHHHHHHHHTTEEEE
T ss_pred HHHHHHhCcCCCCCcCcHHHHHHHHHHHHhcc-CCCCCCCeEEEEEccCCCCcc------chHHHHHHHHHHHHCCCEEE
Confidence 5566777764322 247789999988654321 222345788999999987422 11357788899999999999
Q ss_pred EEeeccCCCCCCCcchhhhhhHHHHHHhhcc-CCeeeehhch
Q 006065 161 NIVVRASLSGEPHMRVIIENDNLLNIFSKKS-SAKTLFVDST 201 (662)
Q Consensus 161 vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~-~g~~~~~~~a 201 (662)
+||++.. .|...|+.++... +|.++.+.+.
T Consensus 151 ~igvG~~-----------~~~~~L~~iA~~~~~~~~~~~~~~ 181 (202)
T 1ijb_A 151 PVGIGPH-----------ANLKQIRLIEKQAPENKAFVLSSV 181 (202)
T ss_dssp EEEESTT-----------SCHHHHHHHHHHCTTCCCEEESSG
T ss_pred EEecCCc-----------CCHHHHHHHhCCCCcccEEEeCCH
Confidence 9999641 2457788898753 5666655544
No 10
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=99.11 E-value=6.6e-10 Score=110.25 Aligned_cols=170 Identities=12% Similarity=0.101 Sum_probs=114.1
Q ss_pred eEEEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC-C-HHHH
Q 006065 6 EALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-D-GHLV 83 (662)
Q Consensus 6 ea~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~-~-~~~l 83 (662)
--++|+||.|.||. .++.++..+..++.+.-+..+.++||||.|++.. .+..++... + ...+
T Consensus 23 ~div~vlD~SgSM~-~~~~~k~~~~~~~~~l~~~~~~~rv~lv~F~~~~---------------~~~~~l~~~~~~~~~~ 86 (223)
T 2b2x_A 23 LDIVIVLDGSNSIY-PWESVIAFLNDLLKRMDIGPKQTQVGIVQYGENV---------------THEFNLNKYSSTEEVL 86 (223)
T ss_dssp EEEEEEEECSTTCC-CHHHHHHHHHHHHTTSCCSTTSCCEEEEEESSSE---------------EEEECTTTCCSHHHHH
T ss_pred ceEEEEEECCCChh-hHHHHHHHHHHHHHhcccCCCCeEEEEEEeCCCc---------------cEEEecCCCCCHHHHH
Confidence 45899999999998 4778888888887744345689999999998752 123455332 2 2456
Q ss_pred HHhhcCCCCCC-CCchhhHHHHHHHHHHH-HhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEEE
Q 006065 84 QSLKHLPQGTC-AGDFLDAIVVGVDMLIK-KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 161 (662)
Q Consensus 84 ~~L~~l~~~~~-~gd~~daL~va~d~l~~-~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~v 161 (662)
..|..+....+ ..++..||..|.+++.. ..+.+....|.|||||||....+ ..+...++.+++.||.+.+
T Consensus 87 ~~i~~l~~~gG~~T~~~~aL~~a~~~l~~~~~~~~~~~~~~iillTDG~~~~~--------~~~~~~~~~~~~~gi~v~~ 158 (223)
T 2b2x_A 87 VAANKIVQRGGRQTMTALGIDTARKEAFTEARGARRGVKKVMVIVTDGESHDN--------YRLKQVIQDCEDENIQRFS 158 (223)
T ss_dssp HHHTTCCCCCCSSCCHHHHHHHHHHTTSSGGGTCCTTSEEEEEEEESSCCTTG--------GGHHHHHHHHHTTTEEEEE
T ss_pred HHHHhhhccCCCCccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC--------ccHHHHHHHHHHCCCEEEE
Confidence 67777754322 34788999999886432 11223345778999999987532 2477788899999999999
Q ss_pred EeeccCCCCCCCcchhhhhhHHHHHHhhc-cCCeeeehhch
Q 006065 162 IVVRASLSGEPHMRVIIENDNLLNIFSKK-SSAKTLFVDST 201 (662)
Q Consensus 162 i~i~~~~~~~~~~~~~~~ne~~L~~l~~~-~~g~~~~~~~a 201 (662)
||++..... .... .......|+.++.. ++|.++.+.+.
T Consensus 159 igvG~~~~~-~~~~-~~~~~~~L~~iA~~p~~g~~~~~~~~ 197 (223)
T 2b2x_A 159 IAILGHYNR-GNLS-TEKFVEEIKSIASEPTEKHFFNVSDE 197 (223)
T ss_dssp EEECGGGC----CC-CHHHHHHHHTTSCSSGGGTEEEESST
T ss_pred EEecCcccc-cccc-chhHHHHHHHHhCCCchhcEEEeCCH
Confidence 999642210 0000 00113678888887 67888776554
No 11
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=99.08 E-value=1.6e-09 Score=106.53 Aligned_cols=171 Identities=13% Similarity=0.120 Sum_probs=114.4
Q ss_pred CeEEEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC-C-HHH
Q 006065 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-D-GHL 82 (662)
Q Consensus 5 Kea~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~-~-~~~ 82 (662)
.--++|+||.|.||. .++.++..+..++...-+..++++||||.|++.. .+..|+... + ...
T Consensus 7 ~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~~v~lv~F~~~~---------------~~~~~l~~~~~~~~~ 70 (213)
T 1pt6_A 7 QLDIVIVLDGSNSIY-PWDSVTAFLNDLLKRMDIGPKQTQVGIVQYGENV---------------THEFNLNKYSSTEEV 70 (213)
T ss_dssp CEEEEEEEECCTTCC-CHHHHHHHHHHHHTTSCBSTTSBEEEEEEESSSE---------------EEEECTTTCSSHHHH
T ss_pred CccEEEEEECCCChh-hHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCCc---------------cEEEeccccCCHHHH
Confidence 456899999999998 5778888888887644345689999999999752 123455322 2 245
Q ss_pred HHHhhcCCCCCC-CCchhhHHHHHHHHHHH-HhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEE
Q 006065 83 VQSLKHLPQGTC-AGDFLDAIVVGVDMLIK-KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (662)
Q Consensus 83 l~~L~~l~~~~~-~gd~~daL~va~d~l~~-~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~ 160 (662)
++.|..+....+ ..++..||..|.+.+.. ..+.+....|.|||||||....+ ..+...++.+++.||.+.
T Consensus 71 ~~~i~~l~~~~G~~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~--------~~~~~~~~~~~~~gi~i~ 142 (213)
T 1pt6_A 71 LVAAKKIVQRGGRQTMTALGTDTARKEAFTEARGARRGVKKVMVIVTDGESHDN--------HRLKKVIQDCEDENIQRF 142 (213)
T ss_dssp HHHHHTCCCCCCSSCCHHHHHHHHHHTTTSGGGTCCTTCEEEEEEEESSCCSCS--------HHHHHHHHHHHHTTEEEE
T ss_pred HHHHHhccCCCCCcccHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCC--------ccHHHHHHHHHHCCCEEE
Confidence 677777754322 34778999999886432 11222345788999999976422 246778889999999999
Q ss_pred EEeeccCCC-CCCCcchhhhhhHHHHHHhhc-cCCeeeehhchH
Q 006065 161 NIVVRASLS-GEPHMRVIIENDNLLNIFSKK-SSAKTLFVDSTT 202 (662)
Q Consensus 161 vi~i~~~~~-~~~~~~~~~~ne~~L~~l~~~-~~g~~~~~~~a~ 202 (662)
+||++.... +.... ......|+.++.. .+|.++.+.+..
T Consensus 143 ~igig~~~~~~~~~~---~~~~~~L~~iA~~~~~g~~~~~~~~~ 183 (213)
T 1pt6_A 143 SIAILGSYNRGNLST---EKFVEEIKSIASEPTEKHFFNVSDEL 183 (213)
T ss_dssp EEEECHHHHHTTCCC---HHHHHHHHHHSCSSHHHHEEEESSGG
T ss_pred EEEeccccccccccc---hhhHHHHHHHhCCCchhcEEEeCCHH
Confidence 999964110 00000 0113678899887 567777765543
No 12
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.08 E-value=3.3e-09 Score=104.66 Aligned_cols=170 Identities=18% Similarity=0.176 Sum_probs=112.7
Q ss_pred CeEEEEEEeCCCCcCC-chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCC----
Q 006065 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD---- 79 (662)
Q Consensus 5 Kea~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~---- 79 (662)
.--++|+||.|.||.. .++.++..+..++.+.-....+++||||.|++.. .+..++..+.
T Consensus 15 ~~div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~ 79 (223)
T 1q0p_A 15 SMNIYLVLDGSDSIGASNFTGAKKSLVNLIEKVASYGVKPRYGLVTYATYP---------------KIWVKVSEADSSNA 79 (223)
T ss_dssp CEEEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEESSSE---------------EEEECTTSGGGGCH
T ss_pred ceeEEEEEeCCCCCchHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCcc---------------ceeeccccCCCCCH
Confidence 3568999999999986 5777888888888764445678999999999862 1234444332
Q ss_pred HHHHHHhhcCCCC----CCCCchhhHHHHHHHHHHHHhccC----CcccceEEEEeCCCCCCCCCCCCCchhhHHHHH--
Q 006065 80 GHLVQSLKHLPQG----TCAGDFLDAIVVGVDMLIKKYGET----YKGKKHLCLITDALCPLKDPDVGTKEDQVSTIA-- 149 (662)
Q Consensus 80 ~~~l~~L~~l~~~----~~~gd~~daL~va~d~l~~~~~~k----k~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia-- 149 (662)
......|..+... .+..++.+||..|.++|...-... ....+.|||||||....+. +...+...+
T Consensus 80 ~~~~~~i~~l~~~~~~~~g~T~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~-----~~~~~~~~~~~ 154 (223)
T 1q0p_A 80 DWVTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG-----DPITVIDEIRD 154 (223)
T ss_dssp HHHHHHHHTCCTTSCSCTTCCCHHHHHHHHHHHHCCTTSSCCTTGGGCEEEEEEEECSCCCSSS-----CTHHHHHHHHH
T ss_pred HHHHHHHHhcccccccCCCCccHHHHHHHHHHHhhccccccccccccCCeEEEEECCCCCCCCC-----ChHHHHHHHHH
Confidence 2356677777642 234578999999999875321101 1346779999999876432 112222223
Q ss_pred --------HHHhhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCC--eeeehhchHHhh
Q 006065 150 --------RQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA--KTLFVDSTTSLR 205 (662)
Q Consensus 150 --------~~l~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g--~~~~~~~a~~ll 205 (662)
+.+++.||.+.+||++.. .+...|+.++...+| .++.+.+..++.
T Consensus 155 ~~~~~~~~~~~~~~~i~i~~igvG~~-----------~~~~~L~~iA~~~~G~~~~~~~~~~~~L~ 209 (223)
T 1q0p_A 155 LLYIGKDRKNPREDYLDVYVFGVGPL-----------VNQVNINALASKKDNEQHVFKVKDMENLE 209 (223)
T ss_dssp HTTCSCBTTBCCGGGEEEEEEECSSC-----------CCHHHHHHHSCCCTTCCCEEETTC-----
T ss_pred HHhhhhhhhhcccCCcEEEEEEecCc-----------CCHHHHHHHhcCCCCCceEEEcCCHHHHH
Confidence 234678999999999641 135789999999888 788877765443
No 13
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=99.06 E-value=2.2e-09 Score=102.43 Aligned_cols=157 Identities=13% Similarity=0.142 Sum_probs=104.5
Q ss_pred CCeEEEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCCHHH-
Q 006065 4 TREALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHL- 82 (662)
Q Consensus 4 ~Kea~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~~~~- 82 (662)
..--++|+||.|.||.......+..+..++..- + .++|+||||.|++.. .+..++.......
T Consensus 5 ~~~dvv~vlD~SgSM~~~~~~~~~~~~~~~~~~-~-~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~ 67 (182)
T 1shu_X 5 RAFDLYFVLDKSGSVANNWIEIYNFVQQLAERF-V-SPEMRLSFIVFSSQA---------------TIILPLTGDRGKIS 67 (182)
T ss_dssp SCEEEEEEEECSGGGGGGHHHHHHHHHHHHHHC-C-CTTEEEEEEEESSSE---------------EEEEEEECCHHHHH
T ss_pred CceeEEEEEECCCCcccCHHHHHHHHHHHHHHh-c-CCCceEEEEEeCCCc---------------eEEECCCCCHHHHH
Confidence 345689999999999875444455555555543 2 389999999998752 1233444222222
Q ss_pred --HHHhhcCCCCCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEE
Q 006065 83 --VQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (662)
Q Consensus 83 --l~~L~~l~~~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~ 160 (662)
+..|..+..+ +..++.+||..|.+++... . .....+.|||||||...-. ....+...++.+++.||.+.
T Consensus 68 ~~l~~l~~~~~~-g~T~~~~al~~a~~~l~~~-~-~~~~~~~iiliTDG~~~~~------~~~~~~~~~~~~~~~~i~i~ 138 (182)
T 1shu_X 68 KGLEDLKRVSPV-GETYIHEGLKLANEQIQKA-G-GLKTSSIIIALTDGKLDGL------VPSYAEKEAKISRSLGASVY 138 (182)
T ss_dssp HHHHHHHTCCCC-SCCCHHHHHHHHHHHHHHH-T-GGGSCEEEEEEECCCCCTT------HHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHhcccCCCC-CCchHHHHHHHHHHHHHhc-c-CCCCCeEEEEECCCCcCCC------CchhHHHHHHHHHhCCCEEE
Confidence 3334433332 2457899999999998763 2 2245788999999986421 22345667888999999999
Q ss_pred EEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeeeeh
Q 006065 161 NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFV 198 (662)
Q Consensus 161 vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~~ 198 (662)
+||+++ .+...|+.++...+|.++..
T Consensus 139 ~igvg~------------~~~~~L~~ia~~~~~~~~~~ 164 (182)
T 1shu_X 139 CVGVLD------------FEQAQLERIADSKEQVFPVK 164 (182)
T ss_dssp EEECSS------------CCHHHHHHHSSSGGGEEESS
T ss_pred EEeCCc------------CCHHHHHHHhCCCCceEEcc
Confidence 999952 13567889988877765543
No 14
>1v7p_C Integrin alpha-2; snake venom, C-type lectin, antagonist, cell adhes glycoprotein, toxin-cell adhesion complex; HET: NAG; 1.90A {Homo sapiens} SCOP: c.62.1.1 PDB: 1aox_A 1dzi_A
Probab=99.04 E-value=2.7e-09 Score=103.85 Aligned_cols=170 Identities=13% Similarity=0.108 Sum_probs=113.0
Q ss_pred CeEEEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC-CH-HH
Q 006065 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-DG-HL 82 (662)
Q Consensus 5 Kea~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~-~~-~~ 82 (662)
.--++|+||.|.||. .++.++..+..++.+.-+..+.++||||.|+++. .+..|+... +. ..
T Consensus 6 ~~div~vlD~SgSm~-~~~~~k~~~~~~~~~l~~~~~~~rvglv~f~~~~---------------~~~~~l~~~~~~~~~ 69 (200)
T 1v7p_C 6 LIDVVVVCDESNSIY-PWDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNP---------------RVVFNLNTYKTKEEM 69 (200)
T ss_dssp CEEEEEEEECCTTCC-CHHHHHHHHHHHHHTSCBSTTSEEEEEEEESSSE---------------EEEECTTTCSSHHHH
T ss_pred cccEEEEEECCCCcc-cHHHHHHHHHHHHHhcCCCCCceEEEEEEECCCc---------------eEEEeCCCcCCHHHH
Confidence 456899999999998 4788888888888754444679999999999752 234555532 22 36
Q ss_pred HHHhhcCCCCCC-CCchhhHHHHHHHHHH-HHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEE
Q 006065 83 VQSLKHLPQGTC-AGDFLDAIVVGVDMLI-KKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (662)
Q Consensus 83 l~~L~~l~~~~~-~gd~~daL~va~d~l~-~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~ 160 (662)
+..|.++....+ ..++..||..|.+.+. ...+.+....|.|||||||.+.-+ ..+...++.+++.||.+.
T Consensus 70 ~~~i~~l~~~~G~~T~~~~al~~a~~~~~~~~~g~r~~~~~~ivllTDG~~~~~--------~~~~~~~~~~~~~gi~i~ 141 (200)
T 1v7p_C 70 IVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGGRRSATKVMVVVTDGESHDG--------SMLKAVIDQCNHDNILRF 141 (200)
T ss_dssp HHHHHHCCCCCCSCCCHHHHHHHHHHHTTSGGGTCCTTSEEEEEEEESSCCSCG--------GGHHHHHHHHHHTTEEEE
T ss_pred HHHHHhhhccCCCCCcHHHHHHHHHHhhcccccCCCCCCCeEEEEEccCCCCCc--------ccHHHHHHHHHHCCCEEE
Confidence 677777764322 3578899999998633 211222345678999999987521 346678889999999999
Q ss_pred EEeeccCCC-CCCCcchhhhhhHHHHHHhhccCCee-eehhch
Q 006065 161 NIVVRASLS-GEPHMRVIIENDNLLNIFSKKSSAKT-LFVDST 201 (662)
Q Consensus 161 vi~i~~~~~-~~~~~~~~~~ne~~L~~l~~~~~g~~-~~~~~a 201 (662)
+|+++.... ++... . .....|+.++...+|.+ +...+.
T Consensus 142 ~igvg~~~~~~~~~~--~-~~~~~L~~iA~~~~g~~~~~~~~~ 181 (200)
T 1v7p_C 142 GIAVLGYLNRNALDT--K-NLIKEIKAIASIPTERYFFNVSDE 181 (200)
T ss_dssp EEEECHHHHHTTCCC--H-HHHHHHHHHSCSSHHHHEEEESSS
T ss_pred EEEecccccccccch--h-hHHHHHHHHhCCccHhcEEEcCCH
Confidence 999942000 00110 0 11344889998877664 444443
No 15
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=99.04 E-value=6e-10 Score=108.04 Aligned_cols=166 Identities=17% Similarity=0.112 Sum_probs=109.2
Q ss_pred eEEEEEEeCCCCcCC-chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCC--HHH
Q 006065 6 EALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD--GHL 82 (662)
Q Consensus 6 ea~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~--~~~ 82 (662)
--++|+||.|.||.. .+..++..+..++.... .+.++||||.|++.. .+..++.... ...
T Consensus 10 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~l~--~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~~ 72 (198)
T 1n3y_A 10 QDIVFLIDGSGSISSRNFATMMNFVRAVISQFQ--RPSTQFSLMQFSNKF---------------QTHFTFEEFRRSSNP 72 (198)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHHHHHHTTSC--TTTEEEEEEEESSSE---------------EEEECHHHHHHCSSG
T ss_pred eeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcC--CCCcEEEEEEeCCCc---------------cEEEecCccCCHHHH
Confidence 468999999999987 46667777777776432 799999999999862 1223332100 123
Q ss_pred HHHhhcCCCCCCCCchhhHHHHHHHHH-HHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEEE
Q 006065 83 VQSLKHLPQGTCAGDFLDAIVVGVDML-IKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 161 (662)
Q Consensus 83 l~~L~~l~~~~~~gd~~daL~va~d~l-~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~v 161 (662)
.+.|..+....+..++..||..|.+.+ ....+.+....+.|||||||....+. ......++.+++.||.+.+
T Consensus 73 ~~~i~~l~~~~g~T~~~~al~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~~~-------~~~~~~~~~~~~~gi~i~~ 145 (198)
T 1n3y_A 73 LSLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS-------LDYKDVIPMADAAGIIRYA 145 (198)
T ss_dssp GGGGTTCCCCCSCBCHHHHHHHHHTTTTSGGGTCCTTSEEEEEEEESSCCBSCS-------SCHHHHHHHHHHTTCEEEE
T ss_pred HHHHhcCcCCCCCchHHHHHHHHHHHHhCcccCCCCCCceEEEEECCCCCCCCc-------ccHHHHHHHHHHCCCEEEE
Confidence 444555543223457889999999543 32112223457889999999875221 2356678889999999999
Q ss_pred EeeccCCCCCCCcchhhhhhHHHHHHhhccCCee-eehhchH
Q 006065 162 IVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKT-LFVDSTT 202 (662)
Q Consensus 162 i~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~-~~~~~a~ 202 (662)
|+++.... ...+...|+.++...+|.+ +...+..
T Consensus 146 igvG~~~~-------~~~~~~~L~~iA~~~~g~~~~~~~~~~ 180 (198)
T 1n3y_A 146 IGVGLAFQ-------NRNSWKELNDIASKPSQEHIFKVEDFD 180 (198)
T ss_dssp EEESGGGG-------SSTTHHHHHHHSCSSSGGGEEEESSGG
T ss_pred EEcccccc-------ccccHHHHHHHHcCCCcccEEEeCCHH
Confidence 99964210 0124688999999888875 6555543
No 16
>3n2n_F Anthrax toxin receptor 1; rossmann fold; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=99.04 E-value=3.7e-09 Score=101.21 Aligned_cols=159 Identities=14% Similarity=0.124 Sum_probs=105.8
Q ss_pred eEEEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCCHHHHHH
Q 006065 6 EALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQS 85 (662)
Q Consensus 6 ea~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~~~~l~~ 85 (662)
--++|+||.|.||...+...+..+..++.+. .+++++||||.|++.. .+..++..-.......
T Consensus 8 ~div~vlD~SgSM~~~~~~~~~~~~~~~~~~--~~~~~~v~lv~f~~~~---------------~~~~~l~~~~~~~~~~ 70 (185)
T 3n2n_F 8 FDLYFILDKSGSVLHHWNEIYYFVEQLAHKF--ISPQLRMSFIVFSTRG---------------TTLMKLTEDREQIRQG 70 (185)
T ss_dssp EEEEEEEECSGGGGGGHHHHHHHHHHHHHHC--CCTTEEEEEEEESSSE---------------EEEEEEECCHHHHHHH
T ss_pred eeEEEEEeCCCChhhhHHHHHHHHHHHHHHh--CCCCcEEEEEEEecCc---------------eEEeccCCCHHHHHHH
Confidence 3489999999999876666777777777754 3579999999998752 2234555422233344
Q ss_pred hhcCCC--CCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEEEEe
Q 006065 86 LKHLPQ--GTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIV 163 (662)
Q Consensus 86 L~~l~~--~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~vi~ 163 (662)
|..+.. ..+..++.+||..|.+.+...-.......|.|||||||...-+ ........++.+++.||.+.+||
T Consensus 71 i~~l~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~iillTDG~~~~~------~~~~~~~~~~~~~~~gi~i~~ig 144 (185)
T 3n2n_F 71 LEELQKVLPGGDTYMHEGFERASEQIYYENRQGYRTASVIIALTDGELHED------LFFYSEREANRSRDLGAIVYAVG 144 (185)
T ss_dssp HHHHHTCCCCSCCCHHHHHHHHHHHHHHHHTTCBCEEEEEEEEECCCCCHH------HHHHHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHhhhcCCCCccHHHHHHHHHHHHhhccccCCCCCcEEEEEcCCCCCCC------cccchHHHHHHHHHCCCEEEEEE
Confidence 444431 1223478899999999775422222235788999999977421 11134678899999999999999
Q ss_pred eccCCCCCCCcchhhhhhHHHHHHhhccCCeeeehhc
Q 006065 164 VRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDS 200 (662)
Q Consensus 164 i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~~~~ 200 (662)
+++ .|...|+.++.. .+.++...+
T Consensus 145 vg~------------~~~~~L~~iA~~-~~~~~~~~~ 168 (185)
T 3n2n_F 145 VKD------------FNETQLARIADS-KDHVFPVND 168 (185)
T ss_dssp CSS------------CCHHHHTTTSSS-GGGEEEHHH
T ss_pred ecc------------CCHHHHHHHhCC-CCCeEEecc
Confidence 952 135667777754 355666555
No 17
>4hqo_A Sporozoite surface protein 2; malaria, gliding motility, VWA domain, TSR domain, extensibl ribbon, receptor on sporozoite, vaccine target; HET: FUC BGC; 2.19A {Plasmodium vivax} PDB: 4hql_A* 4hqn_A*
Probab=99.01 E-value=3e-09 Score=108.57 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=113.5
Q ss_pred eEEEEEEeCCCCcCCc-h-hHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCC----
Q 006065 6 EALLLLLDVSPSMHSV-L-PDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD---- 79 (662)
Q Consensus 6 ea~vflIDvs~sM~~~-l-~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~---- 79 (662)
--++|+||.|.||... + ..++..+..++.+..+..+.++||||.|++.. .+..++....
T Consensus 19 ~DivfvlD~SgSM~~~~~~~~~k~~~~~lv~~l~~~~~~~rvglv~Fs~~~---------------~~~~~l~~~~~~~~ 83 (266)
T 4hqo_A 19 VDLYLLVDGSGSIGYPNWITKVIPMLNGLINSLSLSRDTINLYMNLFGSYT---------------TELIRLGSGQSIDK 83 (266)
T ss_dssp EEEEEEEECSTTTCHHHHHHTHHHHHHHHHHTCCBCTTSEEEEEEEESSSE---------------EEEECTTSHHHHCH
T ss_pred eeEEEEEECCCCcChhHHHHHHHHHHHHHHHHcccCCCCcEEEEEEecCCc---------------ceEEecCCCCccCH
Confidence 3589999999999853 5 47788888888876666789999999999862 2345665542
Q ss_pred HHHHHHhhcCC---CCCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCC
Q 006065 80 GHLVQSLKHLP---QGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFG 156 (662)
Q Consensus 80 ~~~l~~L~~l~---~~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~g 156 (662)
...+..|+++. ...+..++.+||..|.++|... +.+....|.|||||||... + ...+...++.+++.|
T Consensus 84 ~~~~~~i~~l~~~~~~~G~T~~~~AL~~a~~~l~~~-~~r~~~~~~iIllTDG~~~-d-------~~~~~~~a~~l~~~g 154 (266)
T 4hqo_A 84 RQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDR-VNREKAIQLVILMTDGVPN-S-------KYRALEVANKLKQRN 154 (266)
T ss_dssp HHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHTT-CSCTTSEEEEEEEECSCCS-C-------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHHhhc-cccCCCCeEEEEEccCCCC-C-------chHHHHHHHHHHHCC
Confidence 23455566653 2223447889999998887642 2333457889999999774 1 246778899999999
Q ss_pred cEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhcc--C--Ceeeehhch
Q 006065 157 LRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKS--S--AKTLFVDST 201 (662)
Q Consensus 157 I~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~--~--g~~~~~~~a 201 (662)
|.+.+||++.. .+..+|+.++... + +.++.+.+.
T Consensus 155 i~i~~iGiG~~-----------~~~~~L~~iA~~~~~~g~~~~~~~~d~ 192 (266)
T 4hqo_A 155 VRLAVIGIGQG-----------INHQFNRLIAGCRPREPNCKFYSYADW 192 (266)
T ss_dssp CEEEEEECSSS-----------CCHHHHHHHHTCCTTCSSCTTEECSCH
T ss_pred CEEEEEecCcc-----------cCHHHHHHhhCCCCCCCCCCeEEecCH
Confidence 99999999641 1357788888653 2 255555554
No 18
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB: 4dmu_B 2adf_A 1fe8_A 1ao3_A
Probab=99.00 E-value=7.3e-09 Score=99.81 Aligned_cols=159 Identities=17% Similarity=0.211 Sum_probs=107.7
Q ss_pred CeEEEEEEeCCCCcC-CchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccC-CCCH-H
Q 006065 5 REALLLLLDVSPSMH-SVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIK-VVDG-H 81 (662)
Q Consensus 5 Kea~vflIDvs~sM~-~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~-~~~~-~ 81 (662)
.--++|+||.|.||. ..++.++..+..++.+.-+....++||||.|++.. .+..++. ..+. .
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~~ 69 (189)
T 1atz_A 5 PLDVILLLDGSSSFPASYFDEMKSFAKAFISKANIGPRLTQVSVLQYGSIT---------------TIDVPWNVVPEKAH 69 (189)
T ss_dssp CEEEEEEEECSSSSCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSE---------------EEEECTTCCCCHHH
T ss_pred ceeEEEEEeCCCCCChhhHHHHHHHHHHHHHhcCcCCCCeEEEEEEECCcc---------------eEEEecCCCCCHHH
Confidence 446899999999998 45778888888888764334567999999998752 2334553 2333 3
Q ss_pred HHHHhhcCCCCCCCCchhhHHHHHHHHHHHHh-ccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEE
Q 006065 82 LVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKY-GETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (662)
Q Consensus 82 ~l~~L~~l~~~~~~gd~~daL~va~d~l~~~~-~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~ 160 (662)
....|..+....+..++.+||..|.+++.... +.+....|.||+||||... + .+...++.+++.||.+.
T Consensus 70 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~vivltdg~~~-~---------~~~~~~~~~~~~gi~v~ 139 (189)
T 1atz_A 70 LLSLVDVMQREGGPSQIGDALGFAVRYLTSEMHGARPGASKAVVILVTDVSV-D---------SVDAAADAARSNRVTVF 139 (189)
T ss_dssp HHHHHHTCCCCCCCCCHHHHHHHHHHHHHSCCTTCCTTSEEEEEEEECSCCS-S---------CCHHHHHHHHHTTEEEE
T ss_pred HHHHHHhCcCCCCcchHHHHHHHHHHHHhccccCCCCCCCcEEEEEeCCCCC-c---------hHHHHHHHHHHCCCEEE
Confidence 55567777643334578899999999875421 1121234558899998542 2 24677888999999999
Q ss_pred EEeeccCCCCCCCcchhhhhhHHHHHHhhccCCe-eeehh
Q 006065 161 NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK-TLFVD 199 (662)
Q Consensus 161 vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~-~~~~~ 199 (662)
+||++.. .|...|+.++...++. ++.+.
T Consensus 140 ~igvG~~-----------~~~~~L~~iA~~~~~~~~~~~~ 168 (189)
T 1atz_A 140 PIGIGDR-----------YDAAQLRILAGPAGDSNVVKLQ 168 (189)
T ss_dssp EEEESSS-----------SCHHHHHHHTGGGGGGGCEEES
T ss_pred EEEcCCc-----------CCHHHHHHHHCCCcccCEEEec
Confidence 9999641 1346788888876543 34433
No 19
>4hqf_A Thrombospondin-related anonymous protein, trap; malaria, parasite motility, I domain, TSR domain, receptor O sporozoite, vaccine target; 2.20A {Plasmodium falciparum} PDB: 4hqk_A 2bbx_A
Probab=98.98 E-value=3.5e-09 Score=108.93 Aligned_cols=151 Identities=14% Similarity=0.127 Sum_probs=105.9
Q ss_pred CeEEEEEEeCCCCcCC-ch-hHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC---C
Q 006065 5 REALLLLLDVSPSMHS-VL-PDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---D 79 (662)
Q Consensus 5 Kea~vflIDvs~sM~~-~l-~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~---~ 79 (662)
+--++|+||.|.||.. .+ +.++..+..++.+.-....+++||||.|+++. .+..++... +
T Consensus 21 ~~div~vlD~SgSM~~~~~~~~~k~~~~~~v~~l~~~~~~~rvglv~Fs~~~---------------~~~~~l~~~~~~~ 85 (281)
T 4hqf_A 21 EVDLYLLMDGSGSIRRHNWVNHAVPLAMKLIQQLNLNDNAIHLYASVFSNNA---------------REIIRLHSDASKN 85 (281)
T ss_dssp CEEEEEEEECCCCSSTHHHHHHHHHHHHHHHTTCCCCTTSEEEEEEEEETTE---------------EEEEEECSSCSSC
T ss_pred ceeEEEEEeCCCCcCHHHHHHHHHHHHHHHHHHhccCCCCcEEEEEEcCCCc---------------eEEEEccccCccC
Confidence 3458999999999985 34 67788888888765455569999999999762 123344433 2
Q ss_pred H-HHHHHhhcCCC---CCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhC
Q 006065 80 G-HLVQSLKHLPQ---GTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAF 155 (662)
Q Consensus 80 ~-~~l~~L~~l~~---~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~ 155 (662)
. .++..|..+.. ..+..++.+||..|.++|... ..+....|.|||||||...- ...+...++.+++.
T Consensus 86 ~~~l~~~i~~l~~~~~~~G~T~~~~aL~~a~~~l~~~-~~r~~~~~~iillTDG~~~d--------~~~~~~~~~~l~~~ 156 (281)
T 4hqf_A 86 KEKALIIIKSLLSTNLPYGKTSLTDALLQVRKHLNDR-INRENANQLVVILTDGIPDS--------IQDSLKESRKLSDR 156 (281)
T ss_dssp HHHHHHHHHHHHHTTGGGCSCCHHHHHHHHHHHHHTS-CCCTTCEEEEEEEESSCCSC--------HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhccCCCCCccHHHHHHHHHHHHHhc-cCCCCCCEEEEEEecCCCCC--------cHHHHHHHHHHHHC
Confidence 2 34445555431 122347889999998887652 23334578899999997641 24677889999999
Q ss_pred CcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhc
Q 006065 156 GLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKK 190 (662)
Q Consensus 156 gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~ 190 (662)
||.+.+||++.. .+..+|+.++..
T Consensus 157 gv~i~~igiG~~-----------~~~~~L~~iA~~ 180 (281)
T 4hqf_A 157 GVKIAVFGIGQG-----------INVAFNRFLVGC 180 (281)
T ss_dssp TCEEEEEEESSS-----------CCHHHHHHHTTS
T ss_pred CCEEEEEeCCCc-----------cCHHHHHhhhCC
Confidence 999999999641 245788888865
No 20
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=98.98 E-value=7.8e-09 Score=98.73 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=99.2
Q ss_pred CeEEEEEEeCCCCcCC-chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC---C-
Q 006065 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---D- 79 (662)
Q Consensus 5 Kea~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~---~- 79 (662)
+--++|+||.|.||.. .++.+++.+..++.+.-+....++||||.|++.. .+..++... +
T Consensus 17 ~~divfvlD~SgSm~~~~~~~~k~~~~~~i~~l~~~~~~~rv~vv~F~~~~---------------~~~~~l~~~~~~~~ 81 (178)
T 2xgg_A 17 QLDICFLIDSSGSIGIQNFRLVKQFLHTFLMVLPIGPEEVNNAVVTYSTDV---------------HLQWDLQSPNAVDK 81 (178)
T ss_dssp CEEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSEEEEEEEESSSE---------------EEEECTTSGGGSCH
T ss_pred CeeEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEEeCCce---------------EEEEeCCCCCccCH
Confidence 4579999999999974 4777888888888764333567999999999762 233455443 2
Q ss_pred HHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHh-ccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcE
Q 006065 80 GHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKY-GETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLR 158 (662)
Q Consensus 80 ~~~l~~L~~l~~~~~~gd~~daL~va~d~l~~~~-~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~ 158 (662)
....+.|.++....+..++..||..|.+++.... +.+....+.|||||||...- ...+...++.+++.||.
T Consensus 82 ~~~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~~--------~~~~~~~~~~l~~~gi~ 153 (178)
T 2xgg_A 82 QLAAHAVLDMPYKKGSTNTSDGLKACKQILFTGSRPGREHVPKLVIGMTDGESDS--------DFRTVRAAKEIRELGGI 153 (178)
T ss_dssp HHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCTTCTTSCEEEEEEESSCCCH--------HHHHSHHHHHHHHTTCE
T ss_pred HHHHHHHHhCCCCCCCccHHHHHHHHHHHhcCcccCCCCCCCEEEEEEcCCCCCC--------CccHHHHHHHHHHCCCE
Confidence 3456667777632234478899999999865421 12224568899999997641 13477888999999999
Q ss_pred EEEEeecc
Q 006065 159 MKNIVVRA 166 (662)
Q Consensus 159 l~vi~i~~ 166 (662)
+.+||++.
T Consensus 154 v~~igvG~ 161 (178)
T 2xgg_A 154 VTVLAVGH 161 (178)
T ss_dssp EEEEECC-
T ss_pred EEEEEcCC
Confidence 99999975
No 21
>1mf7_A Integrin alpha M; cell adhesion; 1.25A {Homo sapiens} SCOP: c.62.1.1 PDB: 1na5_A 1jlm_A 1ido_A 1m1u_A 3q3g_G 1n9z_A 1bhq_1 1bho_1 1idn_1 3qa3_G
Probab=98.93 E-value=3.5e-09 Score=102.40 Aligned_cols=167 Identities=15% Similarity=0.084 Sum_probs=109.2
Q ss_pred CeEEEEEEeCCCCcCC-chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC--CHH
Q 006065 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV--DGH 81 (662)
Q Consensus 5 Kea~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~--~~~ 81 (662)
+--++|+||.|.||.. .++.++..+..++.+. ....++||||.|++.. .+..++... ...
T Consensus 5 ~~div~vlD~SgSm~~~~~~~~k~~~~~~~~~l--~~~~~~v~vv~f~~~~---------------~~~~~l~~~~~~~~ 67 (194)
T 1mf7_A 5 DSDIAFLIDGSGSIIPHDFRRMKEFVSTVMEQL--KKSKTLFSLMQYSEEF---------------RIHFTFKEFQNNPN 67 (194)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH--CCTTEEEEEEEESSSE---------------EEEECHHHHHHSCC
T ss_pred CeeEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEEecCCc---------------eEEEecCCcCCHHH
Confidence 4578999999999987 5777888888888753 2668999999998752 122333221 013
Q ss_pred HHHHhhcCCCCCCCCchhhHHHHHHHHHHHH-hccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEE
Q 006065 82 LVQSLKHLPQGTCAGDFLDAIVVGVDMLIKK-YGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (662)
Q Consensus 82 ~l~~L~~l~~~~~~gd~~daL~va~d~l~~~-~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~ 160 (662)
....|.++....+..++.+||..|.+.+... .+.+....|.|||||||...-+. ..+...++.+++.||.+.
T Consensus 68 ~~~~i~~l~~~~g~T~~~~aL~~a~~~l~~~~~~~r~~~~~~iillTDG~~~~d~-------~~~~~~~~~~~~~gi~v~ 140 (194)
T 1mf7_A 68 PRSLVKPITQLLGRTHTATGIRKVVRELFNITNGARKNAFKILVVITDGEKFGDP-------LGYEDVIPEADREGVIRY 140 (194)
T ss_dssp HHHHHTTCCCCCSCBCHHHHHHHHHHTTTSGGGTCCTTSEEEEEEEESSCCBSCS-------SCGGGTHHHHHHTTEEEE
T ss_pred HHHHHHhCcCCCCCchHHHHHHHHHHHhcCcccCCCCCCCeEEEEEcCCCCCCCc-------hhhHHHHHHHHHCCCEEE
Confidence 4566777754223447889999998754321 12222346789999999765111 123455678899999999
Q ss_pred EEeeccCCCCCCCcchhhhhhHHHHHHhhcc-CCeeeehhchH
Q 006065 161 NIVVRASLSGEPHMRVIIENDNLLNIFSKKS-SAKTLFVDSTT 202 (662)
Q Consensus 161 vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~-~g~~~~~~~a~ 202 (662)
+||++... . ...+...|+.++... +|.++.+.+..
T Consensus 141 ~igvG~~~----~---~~~~~~~L~~iA~~~~~~~~~~~~~~~ 176 (194)
T 1mf7_A 141 VIGVGDAF----R---SEKSRQELNTIASKPPRDHVFQVNNFE 176 (194)
T ss_dssp EEEESGGG----C---SHHHHHHHHHHSCSSHHHHEEEESSGG
T ss_pred EEEecccc----c---ccccHHHHHHHhCCCCcccEEEeCCHH
Confidence 99996411 0 112457888898774 35666665543
No 22
>2odp_A Complement C2; C3/C5 convertase, complement serin protease, human complement system, glycoprotein, SP, VWFA,; HET: NAG; 1.90A {Homo sapiens} PDB: 2odq_A* 2i6q_A* 2i6s_A*
Probab=98.92 E-value=1.1e-08 Score=114.21 Aligned_cols=169 Identities=19% Similarity=0.170 Sum_probs=114.9
Q ss_pred CeEEEEEEeCCCCcCC-chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC---CH
Q 006065 5 REALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---DG 80 (662)
Q Consensus 5 Kea~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~---~~ 80 (662)
+--+||+||.|.||.. .++.+++.+..++.+.-..+++|+||||.|+++. .+..++..+ +.
T Consensus 9 ~~divfvlD~SgSM~~~~~~~~k~~~~~l~~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~~ 73 (509)
T 2odp_A 9 HLNLYLLLDASQSVSENDFLIFKESASLMVDRIFSFEINVSVAIITFASEP---------------KVLMSVLNDNSRDM 73 (509)
T ss_dssp EEEEEEEEECSTTSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEEESSSE---------------EEEECTTSGGGGCH
T ss_pred CeeEEEEEeCCCccchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccCCC---------------ceeEeccCCCCCCH
Confidence 4568999999999986 4778899999998876566899999999998752 234555432 22
Q ss_pred -HHHHHhhcCCCCC----CCCchhhHHHHHHHHHHHHhccC-------CcccceEEEEeCCCCCCCCCCCCCchhhHHHH
Q 006065 81 -HLVQSLKHLPQGT----CAGDFLDAIVVGVDMLIKKYGET-------YKGKKHLCLITDALCPLKDPDVGTKEDQVSTI 148 (662)
Q Consensus 81 -~~l~~L~~l~~~~----~~gd~~daL~va~d~l~~~~~~k-------k~~~krIvLiTD~~~p~~~~~~~~~~~~~~~i 148 (662)
..++.|+++.... ...++..||..|.+++...-... ....+.|||||||....+. ....+...
T Consensus 74 ~~~~~~l~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~~~~iillTDG~~~~~~-----~~~~~~~~ 148 (509)
T 2odp_A 74 TEVISSLENANYKDHENGTGTNTYAALNSVYLMMNNQMRLLGMETMAWQEIRHAIILLTDGKSNMGG-----SPKTAVDH 148 (509)
T ss_dssp HHHHHHHHTCCGGGGTTCCSCCHHHHHHHHHHHHHHHHHHHCTTSHHHHTEEEEEEEESCSCCCSSS-----CTHHHHHH
T ss_pred HHHHHHHHhcccccCCCCCCccHHHHHHHHHHHHhhcccccccccccccccceEEEEECCCCccCCC-----ChhHHHHH
Confidence 3566677776541 33478899999999885431110 0135779999999876432 11222222
Q ss_pred HHH-Hh-----hCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCe--eeehhchHH
Q 006065 149 ARQ-MV-----AFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK--TLFVDSTTS 203 (662)
Q Consensus 149 a~~-l~-----~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~--~~~~~~a~~ 203 (662)
++. +. +.||.+.+||++.. ..+...|+.+++..+|. ++.+.+..+
T Consensus 149 ~~~~~~~~~~~~~~i~i~~iGvG~~----------~~~~~~L~~iA~~~~G~~~~~~~~~~~~ 201 (509)
T 2odp_A 149 IREILNINQKRNDYLDIYAIGVGKL----------DVDWRELNELGSKKDGERHAFILQDTKA 201 (509)
T ss_dssp HHHHTTCCSTTGGGEEEEEEEESSS----------CCCHHHHHHHSCCCTTCCCEEEESSHHH
T ss_pred HHHHhhccccccCceEEEEEEcCCC----------cccHHHHHhhccCCCCceeeEEecCHHH
Confidence 222 21 78999999999641 12468899999998887 777666543
No 23
>4fx5_A VON willebrand factor type A; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, blood clotting; HET: MSE; 1.73A {Catenulispora acidiphila}
Probab=98.84 E-value=6.1e-08 Score=106.60 Aligned_cols=158 Identities=9% Similarity=0.030 Sum_probs=109.3
Q ss_pred CeEEEEEEeCCCCcC---CchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccC----C
Q 006065 5 REALLLLLDVSPSMH---SVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIK----V 77 (662)
Q Consensus 5 Kea~vflIDvs~sM~---~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~----~ 77 (662)
.-.++|+||+|.||. ..++.++..+..++.+ ..+.|++|||.|++.. .++.|+. .
T Consensus 77 ~~dvv~VLD~SGSM~~~~~rl~~ak~a~~~ll~~---L~~~drv~lV~Fs~~a---------------~~~~p~t~~l~~ 138 (464)
T 4fx5_A 77 ENVEVIIIDCSGSMDYPRTKMMAAKEATKVAIDT---LTDGAFFAVVAGTEGA---------------RVVYPTGGQLLR 138 (464)
T ss_dssp CEEEEEEEECCGGGGTTTHHHHHHHHHHHHHHHH---SCTTCEEEEEEESSSE---------------EEEESSSSSCEE
T ss_pred CceEEEEEEcCcccCCCCchHHHHHHHHHHHHHh---CCCCCEEEEEEEcCce---------------EEEecCCccccc
Confidence 356999999999997 3477888888888774 3589999999998752 1233432 2
Q ss_pred CCH----HHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHh
Q 006065 78 VDG----HLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMV 153 (662)
Q Consensus 78 ~~~----~~l~~L~~l~~~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~ 153 (662)
.+. .....|..+..+. ..++.+||..|.++|.. .....+.|||||||...... ...+..... ..
T Consensus 139 ~~~~~~~~l~~~I~~L~~~G-gT~l~~aL~~A~~~l~~----~~~~~~~IILLTDG~~~~~~------~~~l~~~~~-a~ 206 (464)
T 4fx5_A 139 ADYQSRAAAKEAVGRLHANG-GTAMGRWLAQAGRIFDT----APSAIKHAILLTDGKDESET------PADLARAIQ-SS 206 (464)
T ss_dssp CSHHHHHHHHHHHHTCCCCS-CCCHHHHHHHHHHHHTT----CTTSEEEEEEEESSCCTTSC------HHHHHHHHH-HH
T ss_pred CCHHHHHHHHHHHHcCCCCC-CCcHHHHHHHHHHHHhc----CCCCCCEEEEEcCCCCCCCC------hHHHHHHHH-Hh
Confidence 222 2445566675532 34789999999998753 22446899999999865331 123333222 34
Q ss_pred hCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeeeehhchHH
Q 006065 154 AFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDSTTS 203 (662)
Q Consensus 154 ~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~~~~a~~ 203 (662)
..+|.+.+||++.. .|...|+.++..++|.++.+.+..+
T Consensus 207 ~~~i~i~tiGiG~~-----------~d~~~L~~IA~~tgG~~~~v~d~~~ 245 (464)
T 4fx5_A 207 IGNFTADCRGIGED-----------WEPKELRKIADALLGTVGIIRDPAT 245 (464)
T ss_dssp TTTCEEEEEEESSS-----------SCHHHHHHHHHHTTCCEEEESSGGG
T ss_pred cCCCeEEEEEeCCc-----------cCHHHHHHHHHhCCCEEEEcCCHHH
Confidence 67899999999641 2457899999999999887766543
No 24
>2x31_A Magnesium-chelatase 60 kDa subunit; ligase, bacteriochlorophyll biosynthesis, photosynthesis; 7.50A {Rhodobacter capsulatus}
Probab=98.79 E-value=3.5e-10 Score=108.98 Aligned_cols=165 Identities=16% Similarity=0.193 Sum_probs=108.0
Q ss_pred CeEEEEEEeCCCCcC-CchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCCHH-H
Q 006065 5 REALLLLLDVSPSMH-SVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGH-L 82 (662)
Q Consensus 5 Kea~vflIDvs~sM~-~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~~~-~ 82 (662)
.-.++|+||+|.||. ..++.++.++..++.+. ..+.|+||||.|+++... ++.|+.. +.. .
T Consensus 5 ~~~vv~vlD~SgSM~~~~~~~~k~~~~~~~~~~--~~~~~~v~lv~f~~~~~~--------------~~~~~~~-~~~~~ 67 (189)
T 2x31_A 5 DRVLIFAVDASGSAAVARLSEAKGAVELLLGRA--YAARDHVSLITFRGTAAQ--------------VLLQPSR-SLTQT 67 (189)
T ss_dssp CCEEEEEEECCTTSCC--CHHHHHHHHHHHHHS--CTTTSCCCEEEESBSCCC--------------BCTTTCS-CHHHH
T ss_pred CeEEEEEEECCCCCCchHHHHHHHHHHHHHHHh--cCCCcEEEEEEECCCCce--------------EecCCCC-CHHHH
Confidence 457899999999994 56788888888888642 479999999999974221 1233333 333 4
Q ss_pred HHHhhcCCCCCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCC---CCchhhHHHHHHHHhhCCcEE
Q 006065 83 VQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDV---GTKEDQVSTIARQMVAFGLRM 159 (662)
Q Consensus 83 l~~L~~l~~~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~---~~~~~~~~~ia~~l~~~gI~l 159 (662)
...|..+..+. ..++.+||..|.+++.+. ......+.|||||||....+.... ....+.+..+++.+++.||.+
T Consensus 68 ~~~i~~l~~~g-~T~~~~al~~a~~~l~~~--~~~~~~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v 144 (189)
T 2x31_A 68 KRQLQGLPGGG-GTPLASGMEMAMVTAKQA--RSRGMTPTIALLTDGRGNIALDGTANRELAGEQATKVARAIRASGMPA 144 (189)
T ss_dssp HHHHHHCCCCB-CCCCHHHHHHHHHHHHTC--TTTCSSEEEEECCBSCCSSCCTHHHHHGGGTCCCEEEEECTGGGGSCC
T ss_pred HHHHhcCCCCC-CCCHHHHHHHHHHHHHhc--cCCCCceEEEEECCCCCCCCCCccccccchhHHHHHHHHHHHHcCCeE
Confidence 55677776542 347889999999998652 212357889999999876432000 000012234456678889988
Q ss_pred EEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeeeehhch
Q 006065 160 KNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDST 201 (662)
Q Consensus 160 ~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~~~~a 201 (662)
.+|+++.. +...|+.++..++|.++.+.++
T Consensus 145 ~~ig~g~~------------~~~~L~~iA~~~~G~~~~~~~~ 174 (189)
T 2x31_A 145 VIIDTAMR------------PNPALVDLARTMDAHYIALPRA 174 (189)
T ss_dssp THHHHHHS------------SCSSSCSTTTEEEESSTTTHHH
T ss_pred EEEecCCC------------CHHHHHHHHHhcCCeEEECCCc
Confidence 88887531 2356777888888887766554
No 25
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=98.77 E-value=8.1e-09 Score=102.04 Aligned_cols=94 Identities=17% Similarity=0.282 Sum_probs=70.0
Q ss_pred eeecCCChHhHHHHHHhCCC-----Cc-----hHHHHHHHHHHHHHHHhhccCCCC-CchHHHHHHHHHHHHHhhhhhch
Q 006065 561 DKIGDLTPIQDFEAMMSRRD-----CP-----DWVDKAIEDMKNKIFGLLENSNEG-INYPKAVELLVALRKGCILEQVY 629 (662)
Q Consensus 561 ~~ig~~~pv~dF~~~l~~~~-----~~-----~~~~~a~~qm~~~I~~lv~~s~~~-~~y~ka~~~l~~~R~~~i~~~e~ 629 (662)
..||.++|.+||+.++.|.- .+ .-|.+.+++++++|++||.++... ..|+||.+.|+.+|..|- +=.|
T Consensus 211 ~~i~~e~PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~-fygP 289 (359)
T 3ism_C 211 ATLTKENPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAG-FYGP 289 (359)
T ss_dssp --------CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHH-HHCT
T ss_pred hhccCcCcHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhcc-ccCC
Confidence 45999999999999998760 11 248899999999999999988221 239999999999999987 5568
Q ss_pred hHHHHHHHHHH--------HHHhhccccC-CceeE
Q 006065 630 LSVSFFLLWFA--------FAFWDNSCLN-DMSSI 655 (662)
Q Consensus 630 ~~~N~fl~~lk--------~~fW~~~~~~-~~~~~ 655 (662)
-.||+|+-+|| .+||+.++++ ++++|
T Consensus 290 ~~YNeWIvklrdelL~r~~l~FW~~~iVk~~lGp~ 324 (359)
T 3ism_C 290 DDYNSWIFNLRDEVLTKELLDFWRDKMVKMELGPS 324 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHTTTTTTCSSC
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 89999999998 6999988875 44443
No 26
>1rrk_A Complement factor B; BB, hydrolase; 2.00A {Homo sapiens} SCOP: b.47.1.2 c.62.1.1 PDB: 1rs0_A* 1rtk_A* 2win_I* 1dle_A
Probab=98.76 E-value=6.1e-08 Score=107.69 Aligned_cols=165 Identities=18% Similarity=0.191 Sum_probs=110.2
Q ss_pred EEEEEEeCCCCcCC-chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC----CHH
Q 006065 7 ALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV----DGH 81 (662)
Q Consensus 7 a~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~----~~~ 81 (662)
-+||+||.|.||.. .++.++..+..++.+.-.....++||||.|++.. .+..++..+ ...
T Consensus 3 div~vlD~SgSM~~~~~~~~k~~~~~~~~~l~~~~~~~~v~lv~f~~~~---------------~~~~~~~~~~~~~~~~ 67 (497)
T 1rrk_A 3 NIYLVLDGSDSIGASNFTGAKKVLVNLIEKVASYGVKPRYGLVTYATYP---------------KIWVKVSEADSSNADW 67 (497)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSE---------------EEEECTTSGGGGCHHH
T ss_pred eEEEEEECCCCcchhhHHHHHHHHHHHHHHhhccCCCceEEEEEecCCc---------------eEeeccccccccCHHH
Confidence 48999999999975 5778888888888765446678999999999652 122333322 233
Q ss_pred HHHHhhcCCCC----CCCCchhhHHHHHHHHHHHHhc----cCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHh
Q 006065 82 LVQSLKHLPQG----TCAGDFLDAIVVGVDMLIKKYG----ETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMV 153 (662)
Q Consensus 82 ~l~~L~~l~~~----~~~gd~~daL~va~d~l~~~~~----~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~ 153 (662)
..+.|.++... ....++.+||..|.+++...-. ......+.|||||||....+. +....++.++
T Consensus 68 ~~~~l~~l~~~~~~~~g~T~~~~al~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~~~g~--------~~~~~~~~~~ 139 (497)
T 1rrk_A 68 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGG--------DPITVIDEIR 139 (497)
T ss_dssp HHHHHHHCCGGGSCCTTCCCHHHHHHHHHHHHCCC------CGGGCEEEEEEEECSCCCSSS--------CTHHHHHHHH
T ss_pred HHHHHHhCcCccccccCccCHHHHHHHHHHHhhhhhccccccccccceEEEEEeCCCcccCC--------ChhHHHHHHH
Confidence 56667777531 1234788999999998732100 012356789999999876432 1223333333
Q ss_pred -------------hCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCC--eeeehhchHHhh
Q 006065 154 -------------AFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSA--KTLFVDSTTSLR 205 (662)
Q Consensus 154 -------------~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g--~~~~~~~a~~ll 205 (662)
+.||.+.+||++.. .+...|+.++...+| .++.+.+..++-
T Consensus 140 ~~~~~~~~~~~~~~~~i~v~~igvG~~-----------~~~~~L~~iA~~~~g~~~~~~~~~~~~l~ 195 (497)
T 1rrk_A 140 DLLYIGKDRKNPREDYLDVYVFGVGPL-----------VNQVNINALASKKDNEQHVCKVKDMECLE 195 (497)
T ss_dssp HHTTCSSCC-CCCGGGEEEEEEECSSS-----------CCHHHHHHHSCCCTTCCCEEETTCHHHHH
T ss_pred HHhhhhcccccchhcCeeEEEecCCCc-----------cCHHHHHHHhcCCCCcceEEEeCCHHHHh
Confidence 34999999999641 235789999999888 788877664433
No 27
>3hrz_D Complement factor B; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Homo sapiens} PDB: 2xwj_I* 3hs0_D* 2ok5_A* 2xwb_F*
Probab=98.75 E-value=6e-08 Score=113.18 Aligned_cols=166 Identities=17% Similarity=0.169 Sum_probs=112.7
Q ss_pred EEEEEEeCCCCcCCc-hhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC---CH-H
Q 006065 7 ALLLLLDVSPSMHSV-LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV---DG-H 81 (662)
Q Consensus 7 a~vflIDvs~sM~~~-l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~---~~-~ 81 (662)
-++|+||.|.||... ++.+++.+..++.+.-....+|+||||.|+++. .+..++... +. .
T Consensus 245 div~vlD~SgSM~~~~~~~~k~~~~~~i~~l~~~~~~~rv~lv~f~~~~---------------~~~~~l~~~~~~~~~~ 309 (741)
T 3hrz_D 245 NIYLVLDGSGSIGASDFTGAKKCLVNLIEKVASYGVKPRYGLVTYATYP---------------KIWVKVSEADSSNADW 309 (741)
T ss_dssp EEEEEEECSTTTCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEEESSSE---------------EEEECTTSGGGGCHHH
T ss_pred eEEEEeccCCcccccchHHHHHHHHHHHHhhhccCCCceEEEEEeccCC---------------ceeEeecccCCcCHHH
Confidence 489999999999654 788888888888876666788999999998752 234555542 33 3
Q ss_pred HHHHhhcCCC----CCCCCchhhHHHHHHHHHHHHh-cc---CCcccceEEEEeCCCCCCCCCCCCCchhhHHHH-----
Q 006065 82 LVQSLKHLPQ----GTCAGDFLDAIVVGVDMLIKKY-GE---TYKGKKHLCLITDALCPLKDPDVGTKEDQVSTI----- 148 (662)
Q Consensus 82 ~l~~L~~l~~----~~~~gd~~daL~va~d~l~~~~-~~---kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~i----- 148 (662)
+++.|+++.. ..+..++.+||..|.++|...- .. .....|.|||||||....+.+ ....++.+
T Consensus 310 ~~~~i~~l~~~~~~~~ggT~~~~aL~~a~~~l~~~~~~~~~~~~~~~~~iillTDG~~n~g~~----p~~~~~~i~~~~~ 385 (741)
T 3hrz_D 310 VTKQLNEINYEDHKLKSGTNTKKALQAVYSMMSWPDDVPPEGWNRTRHVIILMTDGLHNMGGD----PITVIDEIRDLLY 385 (741)
T ss_dssp HHHHHTTCCGGGGSSSCCCCHHHHHHHHHHHHCCC--CCCTTGGGEEEEEEEEECSCCCSSSC----THHHHHHHHHHTT
T ss_pred HHHHHHhcccccccCCCChHHHHHHHHHHHHHhhhhhccccchhccCeEEEEECCCccccCCC----chHHHHHHHHHhh
Confidence 6667777762 1234478899999999873110 11 112456799999998765431 11222222
Q ss_pred ----HHHHhhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCe--eeehhchH
Q 006065 149 ----ARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK--TLFVDSTT 202 (662)
Q Consensus 149 ----a~~l~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~--~~~~~~a~ 202 (662)
++.+++.||.+.+||++.. .|+..|+.|++..+|. ++.+.+..
T Consensus 386 ~~~~a~~~~~~gi~i~~igvG~~-----------~~~~~L~~ia~~~~g~~~~~~~~~~~ 434 (741)
T 3hrz_D 386 IGKDRKNPREDYLDVYVFGVGPL-----------VNQVNINALASKKDNEQHVFKVKDME 434 (741)
T ss_dssp CSSCTTCCCGGGEEEEEEECSSS-----------CCHHHHHHHSCCCTTCCCEECBSSHH
T ss_pred cccccccccccCeeEEEEeCCCc-----------CCHHHHHHHhcCCCCcceEEEeCCHH
Confidence 2356788999999999641 2356799999988884 77666553
No 28
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=98.71 E-value=2.8e-08 Score=96.70 Aligned_cols=153 Identities=11% Similarity=0.075 Sum_probs=101.8
Q ss_pred eEEEEEEeCCCCcCC-chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC-CH-HH
Q 006065 6 EALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-DG-HL 82 (662)
Q Consensus 6 ea~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~-~~-~~ 82 (662)
-=++|+||.|.||.. .++.++..+..++.+.-+..++++||||.|+++. .+..++... +. ..
T Consensus 22 ~DivfvlD~S~Sm~~~~~~~~k~~~~~~~~~l~~~~~~~rv~vv~fs~~~---------------~~~~~l~~~~~~~~~ 86 (199)
T 3zqk_A 22 LDVAFVLEGSDKIGEADFNRSKEFMEEVIQRMDVGQDSIHVTVLQYSYMV---------------TVEYPFSEAQSKGDI 86 (199)
T ss_dssp CEEEEEEECCTTTCHHHHHHHHHHHHHHHHHSCBSTTSBEEEEEEESSSE---------------EEEECTTSCCCHHHH
T ss_pred cCEEEEEECCCCCCHHHHHHHHHHHHHHHHhcCCCCCceEEEEEEECCcc---------------cEEEecCCcCCHHHH
Confidence 348999999999985 4788888898888876667899999999999862 123455432 23 45
Q ss_pred HHHhhcCCCCCC-CCchhhHHHHHHHHHHH-HhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEE
Q 006065 83 VQSLKHLPQGTC-AGDFLDAIVVGVDMLIK-KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMK 160 (662)
Q Consensus 83 l~~L~~l~~~~~-~gd~~daL~va~d~l~~-~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~ 160 (662)
++.|+++....+ ..+..+||..|.+.+.. ..+.+....|.|||||||.+.-.. .. + ..||.+.
T Consensus 87 ~~~i~~l~~~gg~~T~~~~aL~~a~~~l~~~~~g~r~~~~~~iillTDG~~~d~v-------~~-------~-~~~v~v~ 151 (199)
T 3zqk_A 87 LQRLREIRYQGGNRTNTGLALRYLSDHSFLVSQGDREQAPNLVYMVTGNPASDEI-------KR-------L-PGDIQVV 151 (199)
T ss_dssp HHHHHHCCCCCCSCCCHHHHHHHCCCCCTCGGGTCCTTSCEEEEEEECSCCSSCC-------CC-------C-CTTEEEE
T ss_pred HHHHHhCcCCCCCcChHHHHHHHHHHHhhCcccCCCCCCCeEEEEEeCCCCchHH-------HH-------H-hCCCEEE
Confidence 667777764333 35788999999875332 112223346789999999753111 01 1 2789999
Q ss_pred EEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeeeehhch
Q 006065 161 NIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDST 201 (662)
Q Consensus 161 vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~~~~a 201 (662)
.||++.. .|...|+.++. .+..+.+.+.
T Consensus 152 ~iGiG~~-----------~~~~~L~~iA~--~~~~~~~~~~ 179 (199)
T 3zqk_A 152 PIGVGPN-----------ANVQELERIGW--PNAPILIQDF 179 (199)
T ss_dssp EEEESTT-----------CCHHHHHHHHT--TSCCEEESCT
T ss_pred EEEcCCC-----------CCHHHHHHHhC--CCceEEeCCH
Confidence 9999631 24677888887 3334444443
No 29
>3k6s_A Integrin alpha-X; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_A* 3k72_A*
Probab=98.42 E-value=4.3e-07 Score=109.62 Aligned_cols=162 Identities=18% Similarity=0.119 Sum_probs=106.8
Q ss_pred EEEEEEeCCCCcCCc-hhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCC--CCHHHH
Q 006065 7 ALLLLLDVSPSMHSV-LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKV--VDGHLV 83 (662)
Q Consensus 7 a~vflIDvs~sM~~~-l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~--~~~~~l 83 (662)
=++|+||.|.||... ++.++..+..++.+. ...+++||||.|+++. .+..++.. -..+..
T Consensus 132 DIvfvlD~SgSm~~~~f~~~k~fv~~lv~~~--~~~~~rVglV~Fs~~~---------------~~~~~lt~~~~~~~l~ 194 (1095)
T 3k6s_A 132 DIVFLIDGSGSISSRNFATMMNFVRAVISQF--QRPSTQFSLMQFSNKF---------------QTHFTFEEFRRSSNPL 194 (1095)
T ss_dssp EEEEEEECCTTSCSHHHHHHHHHHHHHHHSS--CSSSEEEEEEEESSSE---------------EEEECSHHHHSCSCGG
T ss_pred cEEEEEcCCCCCChhHHHHHHHHHHHHHHhc--cccccEEEEEEECCeE---------------EEEecCcccCCHHHHH
Confidence 489999999999874 778888888888752 3567999999999862 12334431 111234
Q ss_pred HHhhcCCCCCCCCchhhHHHHHHHHHHH-HhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEEEE
Q 006065 84 QSLKHLPQGTCAGDFLDAIVVGVDMLIK-KYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNI 162 (662)
Q Consensus 84 ~~L~~l~~~~~~gd~~daL~va~d~l~~-~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~vi 162 (662)
..++.+....+......||..|.+.+.. ..+.+....|.|||||||....+. ..+...++.+++.||.+.+|
T Consensus 195 ~ai~~i~~~gG~T~~g~AL~~a~~~lf~~~~g~R~~~~kviIllTDG~~~~d~-------~~~~~~a~~~r~~GI~i~aI 267 (1095)
T 3k6s_A 195 SLLASVHQLQGFTYTATAIQNVVHRLFHASYGARRDAAKILIVITDGKKEGDS-------LDYKDVIPMADAAGIIRYAI 267 (1095)
T ss_dssp GGTTTCCCCCSCBCHHHHHHHHHTTTTSTTTTCCSSSEEEEEEEESSCCBSCS-------SCHHHHHHHHHHHCEEECCE
T ss_pred HHHhhhhcccCCChHHHHHHHHHHhhccccccCCCCCCeEEEEEeCCCcCCCc-------hhHHHHHHHHHHCCCEEEEE
Confidence 4455553322344678999999875432 112333457889999999885321 34677888999999999999
Q ss_pred eeccCCCCCCCcchhhhhhHHHHHHhhccCC-eeeehh
Q 006065 163 VVRASLSGEPHMRVIIENDNLLNIFSKKSSA-KTLFVD 199 (662)
Q Consensus 163 ~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g-~~~~~~ 199 (662)
|++..+. ...+...|+.++...+| .++.+.
T Consensus 268 GVG~~~~-------~~~d~~eL~~IAs~p~g~~vf~v~ 298 (1095)
T 3k6s_A 268 GVGLAFQ-------NRNSWKELNDIASKPSQEHIFKVE 298 (1095)
T ss_dssp EBSSGGG-------STTSSHHHHTTSCSSTTTSCCCBS
T ss_pred ecccccc-------cccCHHHHHHHHcCCCCceEEEcC
Confidence 9965210 01245677888876654 444433
No 30
>1mjn_A Integrin alpha-L; rossmann fold, immune system; 1.30A {Homo sapiens} SCOP: c.62.1.1 PDB: 3hi6_A 1mq8_B* 3eoa_I 3eob_I 1rd4_A* 1lfa_A 1zon_A 1zoo_A 1zop_A 1dgq_A 1xdd_A* 1xdg_A* 1xuo_A* 3e2m_A* 3bqn_B* 1cqp_A* 3bqm_B* 2ica_A* 2o7n_A* 3m6f_A* ...
Probab=98.42 E-value=8.6e-07 Score=84.52 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=97.1
Q ss_pred eEEEEEEeCCCCcCC-chhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCC-H-HH
Q 006065 6 EALLLLLDVSPSMHS-VLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD-G-HL 82 (662)
Q Consensus 6 ea~vflIDvs~sM~~-~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~-~-~~ 82 (662)
--++|+||.|.||.. .++.++..+..++.+ +....++||||.|++.. .+..++.... . +.
T Consensus 3 ~divfvlD~S~Sm~~~~~~~~k~~~~~~~~~--l~~~~~rv~vv~fs~~~---------------~~~~~l~~~~~~~~~ 65 (179)
T 1mjn_A 3 VDLVFLFDGSMSLQPDEFQKILDFMKDVMKK--CSNTSYQFAAVQFSTSY---------------KTEFDFSDYVKRKDP 65 (179)
T ss_dssp EEEEEEEECBTTCCHHHHHHHHHHHHHHHHH--TTTSSEEEEEEEESSSE---------------EEEECHHHHHHHCCH
T ss_pred ccEEEEEeCCCCCCHHHHHHHHHHHHHHHHH--hCCCCeEEEEEEECCce---------------eEEEcCcccCCHHHH
Confidence 358999999999986 477788888888876 35567899999999752 1223443211 0 12
Q ss_pred HHHhhcCCCCCCCCchhhHHHHHHH-HHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEEE
Q 006065 83 VQSLKHLPQGTCAGDFLDAIVVGVD-MLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKN 161 (662)
Q Consensus 83 l~~L~~l~~~~~~gd~~daL~va~d-~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~v 161 (662)
...+..+..-.+..+...||..|.+ ++....+.+....|.|||||||.+.-+. . . .+..||.+.+
T Consensus 66 ~~~~~~i~~~~g~T~~~~aL~~a~~~~~~~~~g~r~~~~~~iillTDG~~~~~~-----~---~------~~~~~i~i~~ 131 (179)
T 1mjn_A 66 DALLKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSG-----N---I------DAAKDIIRYI 131 (179)
T ss_dssp HHHHTTCCCCCBCCCHHHHHHHHHHHTSSGGGTCCTTSEEEEEEEESSCCSSCS-----C---C------GGGTTSEEEE
T ss_pred HHHHHhcccCCCCChHHHHHHHHHHHhcccccCCCCCCCeEEEEEcCCCCCCCc-----c---h------HHHCCCEEEE
Confidence 2334445432233467889999986 4332112223356789999999875321 1 0 2568999999
Q ss_pred EeeccCCCCCCCcchhhhhhHHHHHHhhccCCe-eeehhch
Q 006065 162 IVVRASLSGEPHMRVIIENDNLLNIFSKKSSAK-TLFVDST 201 (662)
Q Consensus 162 i~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~-~~~~~~a 201 (662)
||++.... ...+...|+.++...+|. ++...+.
T Consensus 132 igvG~~~~-------~~~~~~~L~~iA~~~~~~~~~~~~~~ 165 (179)
T 1mjn_A 132 IGIGKHFQ-------TKESQETLHKFASKPASEFVKILDTF 165 (179)
T ss_dssp EEESGGGC-------SHHHHHTTGGGSCSCHHHHEEEESSG
T ss_pred EEcccccc-------ccccHHHHHHHhCCccHhcEEEeCCH
Confidence 99964110 012245677777765553 4554444
No 31
>1yvr_A RO autoantigen, 60-kDa SS-A/RO ribonucleoprotein, 60 kDa; heat repeat, VON willebrand factor A, rossmann fold, midas motif', RNA binding protein; 1.95A {Xenopus laevis} SCOP: a.118.25.1 c.62.1.5 PDB: 1yvp_A 2i91_A
Probab=97.93 E-value=6.6e-05 Score=84.12 Aligned_cols=151 Identities=13% Similarity=0.144 Sum_probs=83.7
Q ss_pred eEEEEEEeCCCCcCCc-----hhHHHHH--HHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCC
Q 006065 6 EALLLLLDVSPSMHSV-----LPDVEKL--CSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV 78 (662)
Q Consensus 6 ea~vflIDvs~sM~~~-----l~~a~~~--~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~ 78 (662)
--++|+||+|.||... +.. .++ +..++. .+++|+||||.|++... ..++..-
T Consensus 369 ~~v~lvvD~SgSM~~~~~~~~l~~-~~~Aa~l~~~~----~~~~d~vglv~Fs~~~~----------------~~~~t~~ 427 (538)
T 1yvr_A 369 KRFLLAIDVSASMNQRVLGSILNA-SVVAAAMCMLV----ARTEKDSHMVAFSDEML----------------PCPITVN 427 (538)
T ss_dssp CCEEEEEECSGGGGSBSTTSSCBH-HHHHHHHHHHH----HHHCSSEEEEEESSSEE----------------CCSCCTT
T ss_pred ceEEEEEECccccCCCCCCCcHHH-HHHHHHHHHHH----hccCCceEEEEECCCce----------------EcCCCCc
Confidence 4688999999999753 333 333 222222 56899999999986311 1233221
Q ss_pred -C-HHHHHHhhcCCCCCCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHh---
Q 006065 79 -D-GHLVQSLKHLPQGTCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMV--- 153 (662)
Q Consensus 79 -~-~~~l~~L~~l~~~~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~--- 153 (662)
+ ...++.|..+.. +..++.+||..|.+. . ...+.|||||||.+..+. ......++.++
T Consensus 428 ~~l~~~l~~l~~~~~--GgT~i~~aL~~a~~~-----~---~~~~~iIliTDg~~~~g~-------~~~~~~l~~~~~~~ 490 (538)
T 1yvr_A 428 MLLHEVVEKMSDITM--GSTDCALPMLWAQKT-----N---TAADIFIVFTDCETNVED-------VHPATALKQYREKM 490 (538)
T ss_dssp SCHHHHHHHHTTCCC--SCCCTTHHHHHHHHT-----T---CCCSEEEEEECCCCCSSS-------CCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHhcCCC--CCCcHHHHHHHHHhc-----c---CCCCEEEEEcCCCCCCCC-------CCHHHHHHHHHHHh
Confidence 1 234555555422 234677888777654 1 225789999999876532 11223333333
Q ss_pred hCCcEEEEEeeccC----C-CC-CCCcchhhhhhHHHHHHhhccCCe
Q 006065 154 AFGLRMKNIVVRAS----L-SG-EPHMRVIIENDNLLNIFSKKSSAK 194 (662)
Q Consensus 154 ~~gI~l~vi~i~~~----~-~~-~~~~~~~~~ne~~L~~l~~~~~g~ 194 (662)
..+|.+.+|+++.. . .+ .+.......++..++.++.-++|.
T Consensus 491 ~~~v~l~~igig~~~~~~~~~~~~~~~~i~g~~e~~l~~Ia~~~~G~ 537 (538)
T 1yvr_A 491 GIPAKLIVCAMTSNGFSIADPDDRGMLDICGFDSGALDVIRNFTLDL 537 (538)
T ss_dssp TCCCEEEEEECSSSSEESSCTTCTTEEEEETTCTTHHHHHHHHHTTC
T ss_pred CCCcEEEEEEecCCCCcccCCCCCCceeeccCCHHHHHHHHHHhCCC
Confidence 33566788888641 1 01 111112223567777777766664
No 32
>2nvo_A RO sixty-related protein, RSR; alpha helical repeats, VON willebrand factor A domain, beta- RNA binding protein; 1.89A {Deinococcus radiodurans}
Probab=97.89 E-value=7.6e-05 Score=83.41 Aligned_cols=156 Identities=12% Similarity=0.052 Sum_probs=85.6
Q ss_pred eEEEEEEeCCCCcCC-ch-----hHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCC
Q 006065 6 EALLLLLDVSPSMHS-VL-----PDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVD 79 (662)
Q Consensus 6 ea~vflIDvs~sM~~-~l-----~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~ 79 (662)
--++++||+|.||.. .. ..+.+++..+. -+..+.+|.||||+|++.-+ ..++.. .
T Consensus 363 ~~~lv~vDvSgSM~~~~~~~~~k~~~~e~Aa~la--~~~~r~~d~v~lv~Fs~~~~----------------~~~~~~-~ 423 (535)
T 2nvo_A 363 TRHLLALDVSGSMTCGDVAGVPGLTPNMAAAAMS--LIALRTEPDALTMGFAEQFR----------------PLGITP-R 423 (535)
T ss_dssp SEEEEEECCSGGGGSCCGGGCTTCCHHHHHHHHH--HHHHHHSSEEEEEEEBSSEE----------------ECCCCT-T
T ss_pred ceEEEEEECCccccCCCCCCCCcccHHHHHHHHH--HHHcCcCCceEEEEECCcce----------------EcCCCc-c
Confidence 457888999999976 32 12344333322 23356899999999987311 112322 1
Q ss_pred HHHHHHhhcCCCC-CCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHh---hC
Q 006065 80 GHLVQSLKHLPQG-TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGTKEDQVSTIARQMV---AF 155 (662)
Q Consensus 80 ~~~l~~L~~l~~~-~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~---~~ 155 (662)
....+.|+.+... .+..|+..+|..+ .+. +....+||||||+++..+. ......++.++ ..
T Consensus 424 ~~l~~~l~~l~~~~~ggTdi~~~l~~a----~~~----~~~~~~vIliTD~~~~~g~-------~~~~~al~~~r~~~~~ 488 (535)
T 2nvo_A 424 DTLESAMQKAQSVSFGGTDCAQPILWA----AQE----RLDVDTFVVYTDNETWAGQ-------VHPTVALDQYAQKMGR 488 (535)
T ss_dssp CCHHHHHHHTCCSSBCCCCTTHHHHHH----HHT----TCCCSEEEEEESSCCCCCS-------SCHHHHHHHHHHHHSC
T ss_pred hhHHHHHHHHhhCCCCCccHHHHHHHH----HHh----cCCCCEEEEEeCCCccCCC-------CCHHHHHHHHHHhhCC
Confidence 2233444444221 1233666665333 321 1335789999999887653 11223344444 44
Q ss_pred CcEEEEEeecc-C---C-CCCC-CcchhhhhhHHHHHHhhccCCee
Q 006065 156 GLRMKNIVVRA-S---L-SGEP-HMRVIIENDNLLNIFSKKSSAKT 195 (662)
Q Consensus 156 gI~l~vi~i~~-~---~-~~~~-~~~~~~~ne~~L~~l~~~~~g~~ 195 (662)
++++.+|+++. + . +++. ...+..-++..++.+++-++|.+
T Consensus 489 ~~klv~i~l~~~~~~~~~~~~~~~~~i~g~se~~l~~Ia~~~~G~~ 534 (535)
T 2nvo_A 489 APKLIVVGLTATEFSIADPQRRDMLDVVGFDAAAPNVMTAFARGEV 534 (535)
T ss_dssp CCEEEEEETTCSCCCCSCTTCSSEEEEEECCTTHHHHHHHHHTTCC
T ss_pred CCeEEEEeccCCCcccCCCCCCCceeeeCCCHHHHHHHHHHhCCCc
Confidence 89999999864 1 1 0110 01122245788888888777765
No 33
>2ww8_A RRGA, cell WALL surface anchor family protein; IGG, pilus, CNA_B, adhesin, integrin, cell adhesion; HET: EPE; 1.90A {Streptococcus pneumoniae}
Probab=97.71 E-value=0.00018 Score=84.67 Aligned_cols=123 Identities=20% Similarity=0.317 Sum_probs=72.3
Q ss_pred EEEEEEeCCCCcCCc-------hhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCcc-------ccccCC--------
Q 006065 7 ALLLLLDVSPSMHSV-------LPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENE-------LTKEVG-------- 64 (662)
Q Consensus 7 a~vflIDvs~sM~~~-------l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~-------l~~~~~-------- 64 (662)
-+|||||+|.||... ++.++.++..++. .+..++.|+||||.|+++..... +.+..+
T Consensus 226 DIVfVLD~SGSM~~~~~~~~~Rl~~~K~a~~~~ld-~L~~~~~drVgLV~Fs~~a~~~~~~~v~~~~~~~~g~~~n~~~~ 304 (893)
T 2ww8_A 226 DVVILLDNSNSMSNIRNKNARRAERAGEATRSLID-KITSDSENRVALVTYASTIFDGTEFTVEKGVADKNGKRLNDSLF 304 (893)
T ss_dssp EEEEEEECCGGGCTTHHHHCCHHHHHHHHHHHHHH-HHHTSTTCEEEEEEESSSBCBSCEEEEECCEECTTCCEECCCTT
T ss_pred cEEEEEeCCCCCCCcCccchhHHHHHHHHHHHHHH-HhhcCCCcEEEEEEecCccccccccccccccccccccccccccc
Confidence 489999999999764 3456677777773 44456899999999998642210 000000
Q ss_pred -Cccc-EEE-------EeccCCCCHHHHHHhhc-CC---C---C------CCCCchhhHHHHHHHHHHHHhccCCcccce
Q 006065 65 -GYEH-VKV-------LQDIKVVDGHLVQSLKH-LP---Q---G------TCAGDFLDAIVVGVDMLIKKYGETYKGKKH 122 (662)
Q Consensus 65 -~y~n-I~v-------~~~l~~~~~~~l~~L~~-l~---~---~------~~~gd~~daL~va~d~l~~~~~~kk~~~kr 122 (662)
.|.. .+. ..||. .+...+..|++ +. . + .+...+.+||..|+++|... . +....|.
T Consensus 305 w~~~~t~~t~~~~~~~~lpLT-~d~~~i~~lk~~I~~~~~~~~G~~~l~~~GGT~i~~AL~~A~~lL~~~-~-~~~~~kv 381 (893)
T 2ww8_A 305 WNYDQTSFTTNTKDYSYLKLT-NDKNDIVELKNKVPTEAEDHDGNRLMYQFGATFTQKALMKADEILTQQ-A-RQNSQKV 381 (893)
T ss_dssp SCTTCCEEEEECCBCCEEEEE-CCHHHHHHHHHHSCSCCCCSCTTSGGGGGCSCCHHHHHHHHHHHHHHH-S-CSSSEEE
T ss_pred ccccccccccccccccccccc-CCHHHHHHHHHHHhhhccccccccccccCCCChHHHHHHHHHHHHHhh-c-ccCCCeE
Confidence 0110 000 11222 13444444443 22 1 1 12236789999999998753 2 2245788
Q ss_pred EEEEeCCCCCC
Q 006065 123 LCLITDALCPL 133 (662)
Q Consensus 123 IvLiTD~~~p~ 133 (662)
|||||||....
T Consensus 382 IILLTDG~pt~ 392 (893)
T 2ww8_A 382 IFHITDGVPTM 392 (893)
T ss_dssp EEEEESSCCSE
T ss_pred EEEEcCCCCCc
Confidence 99999997753
No 34
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=97.71 E-value=0.00017 Score=71.13 Aligned_cols=95 Identities=21% Similarity=0.194 Sum_probs=70.9
Q ss_pred CeEEEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCCHHHHH
Q 006065 5 REALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQ 84 (662)
Q Consensus 5 Kea~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~~~~l~ 84 (662)
+--++|+||.|.||...++.++..+..++...-..+..++||||.|+.+... .+ .+++|+.... ...+
T Consensus 134 ~~~vvfLVDtSgSM~~kl~~vk~al~~Ll~sl~~~~~~~~VavV~F~~~~~~--------~~---~ll~pfT~~~-~~~~ 201 (242)
T 3rag_A 134 ALHLVVCLDTSASMRDKIPTVREAVRDLALSLKVRSGPLAVSVIAFPGKGEE--------AT---RLVQPFSSEV-NVAA 201 (242)
T ss_dssp CEEEEEEEECSGGGTTTHHHHHHHHHHHHHHHTTSSSCEEEEEEEESCSTTC--------SC---EEEEEEESSC-CHHH
T ss_pred CCCEEEEEECcccHHHHHHHHHHHHHHHHHHHhccCCCcEEEEEEECCCCcc--------ce---eecCCCCChH-HHHH
Confidence 3468999999999998899999999999886555667999999999986311 11 1234665555 5556
Q ss_pred HhhcCCCCCCCCchhhHHHHHHHHHHHH
Q 006065 85 SLKHLPQGTCAGDFLDAIVVGVDMLIKK 112 (662)
Q Consensus 85 ~L~~l~~~~~~gd~~daL~va~d~l~~~ 112 (662)
.|..|+.+. ......||..|+++|.++
T Consensus 202 ~l~~L~agG-~Tplg~AL~~A~~~~~~~ 228 (242)
T 3rag_A 202 LEAELVARG-GTPTGPAIDHAADLLLSH 228 (242)
T ss_dssp HHHHCCCCS-CCCHHHHHHHHHHHHHHH
T ss_pred HHhhCCCCC-CCcHHHHHHHHHHHHHHH
Confidence 677776543 336889999999998764
No 35
>2iue_A Pactolus I-domain; membrane protein, CD, ITC, limbs, midas, admidas, membrane, integrin, titration, rossman fold, cell adhesion, transmembrane; NMR {Mus musculus}
Probab=97.11 E-value=0.0034 Score=60.93 Aligned_cols=109 Identities=22% Similarity=0.272 Sum_probs=73.6
Q ss_pred EEEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcCccccccCCCcccEEEEeccCCCCHHHHHHh
Q 006065 7 ALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETENELTKEVGGYEHVKVLQDIKVVDGHLVQSL 86 (662)
Q Consensus 7 a~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~~~~~l~~L 86 (662)
-++||+|+|.||...++..++.+..++++---..++=++|++.|... +|.|+ .++..-.....+.+
T Consensus 5 Dl~fl~D~S~SM~~di~~lk~~~~~l~~~l~~~~~~~r~Gfg~f~Dk-----------~~~~~---l~lT~d~~~F~~~v 70 (212)
T 2iue_A 5 DLYFLMGLSGSAQGHLSNVQTLGSDLLKALNEISRSGRIGFGSIVNM-----------TFQHI---LKLTADSSQFQREL 70 (212)
T ss_dssp EEEEEEECCGGGTTTHHHHHHHHHHHHHHHHHHCSCEEEEEEEESSS-----------CEEEE---EEEESCHHHHHHHH
T ss_pred EEEEEEeCCCcchhHHHHHHHHHHHHHHHHHhhCcCceEEEEEEEcC-----------cceec---CCcCCCHHHHHHHH
Confidence 37999999999999998888888777754322346889999999743 47654 46665555677888
Q ss_pred hcCCC-C--CCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCC
Q 006065 87 KHLPQ-G--TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALC 131 (662)
Q Consensus 87 ~~l~~-~--~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~ 131 (662)
.++.- | +...+-++||..|+-...+ .+=++ ..|-|||+||+..
T Consensus 71 ~~~~vsg~~D~PE~g~dal~qa~~c~~~-i~Wr~-a~rllvl~TDa~~ 116 (212)
T 2iue_A 71 RKQLVSGKLATPKGQLDAVVQVAICLGE-IGWRN-GTRFLVLVTDNDF 116 (212)
T ss_dssp HTCCCCCCSSSSBCHHHHHHHHHHCHHH-HTCCS-SEEEEEEECSSCB
T ss_pred hhccccCCCCCCchHHHHHHHHHHhhhh-cccCC-ccEEEEEECcCCc
Confidence 87643 2 2233567888877643221 23233 5677888888743
No 36
>3rag_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tructural genomics; 1.80A {Alicyclobacillus acidocaldarius subsp}
Probab=96.47 E-value=0.0049 Score=60.77 Aligned_cols=65 Identities=14% Similarity=0.151 Sum_probs=49.6
Q ss_pred cceEEEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeeeeh
Q 006065 120 KKHLCLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFV 198 (662)
Q Consensus 120 ~krIvLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~~ 198 (662)
.|.|||||||++.++. .....|+.+++.||.+++||+++. +.. -...+..|+.++..++|+|+..
T Consensus 10 ~k~iillTDG~~~~g~--------~p~~aa~~a~~~gi~v~tIGig~~--~~~----~~~~~~~L~~IA~~tGG~yf~a 74 (242)
T 3rag_A 10 IRQILVITDGCSNIGP--------DPVEAARRAHRHGIVVNVIGIVGR--GDA----GEQGYQEAHSIADAGGGMCRIV 74 (242)
T ss_dssp EEEEEEEESSCCCSSS--------CHHHHHHHHHHTTCEEEEEEECCS--SSC----TTCCCHHHHHHHHHTTSCEEEE
T ss_pred ccEEEEEccCCCCCCC--------CHHHHHHHHHHCCCEEEEEEecCC--ccc----cchhHHHHHHHHHhcCCeEEEe
Confidence 7999999999987753 356778889999999999999531 100 0123577999999999998764
No 37
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Probab=96.43 E-value=0.02 Score=65.34 Aligned_cols=152 Identities=18% Similarity=0.171 Sum_probs=88.9
Q ss_pred EEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCc------------Ccccccc----CC--CcccE
Q 006065 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEET------------ENELTKE----VG--GYEHV 69 (662)
Q Consensus 8 ~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t------------~n~l~~~----~~--~y~nI 69 (662)
++||||+|.||...++.++.....|+++---..++=++|++.|.-... .|+-... .+ +|+|+
T Consensus 114 ly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~Gfgsf~Dk~~~P~~~~~p~~~~~~pc~~~~~~c~~~f~f~~~ 193 (690)
T 3fcs_B 114 IYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHV 193 (690)
T ss_dssp EEEEEECSGGGHHHHHHTTTTTHHHHHHHHHHCSCEEEEEEEECCCSSTTTSCCCSTTTTTCTTSSSSSCCCCCCSEEEE
T ss_pred EEEEecCCcchHHHHHHHHHHHHHHHHHHHhhCcCceEEeEEeeccccCCccccChhhhccCCCcCCCCCCCCCccceee
Confidence 789999999999888777665555554322245788999999986432 1221000 01 56665
Q ss_pred EEEeccCCCCHHHHHHhhcCCC-CC--CCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCC---------
Q 006065 70 KVLQDIKVVDGHLVQSLKHLPQ-GT--CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPD--------- 137 (662)
Q Consensus 70 ~v~~~l~~~~~~~l~~L~~l~~-~~--~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~--------- 137 (662)
.+|..-.....+.+..+.. +. ..-.-+|||..|+---.+ .+=+....|-|||+||+..-+..+.
T Consensus 194 ---l~lt~~~~~f~~~v~~~~isgn~D~PE~g~dAl~qa~~c~~~-igWr~~a~rllv~~TDa~~H~agDg~l~gi~~pn 269 (690)
T 3fcs_B 194 ---LTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDEK-IGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPN 269 (690)
T ss_dssp ---EEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHH-HTCCSSSEEEEEEEESSCBCCTTGGGGGTCCSCC
T ss_pred ---cccCCCHHHHHHHhhceeccCCCCCCchHHHHHHHHhhcccc-cCCCCCceEEEEEECCCccccCCCccccceecCC
Confidence 4666555566777877643 22 111347888777622111 2323345677888899864221100
Q ss_pred C--------C-------CchhhHHHHHHHHhhCCcEEEEEe
Q 006065 138 V--------G-------TKEDQVSTIARQMVAFGLRMKNIV 163 (662)
Q Consensus 138 ~--------~-------~~~~~~~~ia~~l~~~gI~l~vi~ 163 (662)
+ + .+.-.+.++++.|.+.+|.+.+..
T Consensus 270 d~~chl~~~~~y~~s~~~DypSi~ql~~~l~~~~i~~ifav 310 (690)
T 3fcs_B 270 DGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLIFAV 310 (690)
T ss_dssp CCCCCBCTTCBBGGGGTSCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred CcceeecCCCccccccccCCCCHHHHHHHHHHcCCeEEEEE
Confidence 0 0 001137889999999999665443
No 38
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B*
Probab=95.82 E-value=0.025 Score=64.40 Aligned_cols=150 Identities=17% Similarity=0.146 Sum_probs=87.7
Q ss_pred EEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCcC-----------cccccc----CC--CcccEE
Q 006065 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEETE-----------NELTKE----VG--GYEHVK 70 (662)
Q Consensus 8 ~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t~-----------n~l~~~----~~--~y~nI~ 70 (662)
++||||+|.||...++.++.....|+++---..++=++|+..|.-.... |+-... .+ +|+|+
T Consensus 107 ly~LmD~S~SM~ddi~~lk~l~~~l~~~l~~~t~~~r~GfgsFvDk~~~P~~~~~p~~~~~Pc~~~~~~c~~~f~f~~~- 185 (687)
T 3k6s_B 107 LYYLMDLSYSMLDDLRNVKKLGGDLLRALNEITESGRIGFGSFVDKTVLPFVNTHPDKLRNPCPNKEKECQPPFAFRHV- 185 (687)
T ss_dssp EEEEEECSSTTHHHHHTTTTCCTTHHHHHHSSCCSCEEEEEEECCCSSTTSSCCSSTTTTCCCCSCCCCCCCCCSCEEE-
T ss_pred EEEEEcCCcchHHHHHHHHHHHHHHHHHHHhhCcCcEEeeEEeeccccCCccccCchhccCCCCCCCCCcCCcccceee-
Confidence 7899999999998887776655555553322467899999999864221 111000 01 46665
Q ss_pred EEeccCCCCHHHHHHhhcCCC-CC--CCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCC---------C
Q 006065 71 VLQDIKVVDGHLVQSLKHLPQ-GT--CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPD---------V 138 (662)
Q Consensus 71 v~~~l~~~~~~~l~~L~~l~~-~~--~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~---------~ 138 (662)
.+|..-.....+.+..+.. +. ..-.-+|||..|+--- ++.+=+. ..|-|||+||+..-+..+. +
T Consensus 186 --l~lt~~~~~F~~~v~~~~isgn~D~PE~g~dAl~qa~vc~-~~igWr~-a~rllV~~TDa~~H~agDg~l~gi~~pnd 261 (687)
T 3k6s_B 186 --LKLTNNSNQFQTEVGKQLISGNLDAPEGGLDAMMQVAACP-EEIGWRN-VTRLLVFATDDGFHFAGDGKLGAILTPND 261 (687)
T ss_dssp --EEEESCSHHHHHHHHTSCCCCCSSSSCCHHHHHHHHTTCH-HHHCCCS-SCCEEEEECSSCCCCTTGGGGGTCCCCCC
T ss_pred --cccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhhcc-cccCCcc-ceEEEEEECCCccccCCCccccceecCCC
Confidence 4666666677888887643 22 1113478887776110 1123233 5677888898764221100 0
Q ss_pred -----------C---CchhhHHHHHHHHhhCCcEEEEE
Q 006065 139 -----------G---TKEDQVSTIARQMVAFGLRMKNI 162 (662)
Q Consensus 139 -----------~---~~~~~~~~ia~~l~~~gI~l~vi 162 (662)
. .+.-.+.++++.|.+.+|.+.+.
T Consensus 262 g~Chl~~~~y~~s~~~DyPS~~ql~~~l~~~~I~~ifa 299 (687)
T 3k6s_B 262 GRCHLEDNLYKRSNEFDYPSVGQLAHKLAENNIQPIFA 299 (687)
T ss_dssp SCCCCSSSBCSSGGGSCCCCGGGHHHHHHHTTCBCCEE
T ss_pred CccccCCCccccccccCCCCHHHHHHHHHHcCCeEEEE
Confidence 0 00012567889999999965443
No 39
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=95.76 E-value=0.062 Score=62.71 Aligned_cols=212 Identities=9% Similarity=0.082 Sum_probs=112.9
Q ss_pred eEEEEEEeCCCCcCC--chhHHHHHHHHHHHHHHh-ccCccEEEEEEEcCCCcCcccccc-CC-----CcccEEEEeccC
Q 006065 6 EALLLLLDVSPSMHS--VLPDVEKLCSRLIQKKLI-YGKNHEVGVILFGTEETENELTKE-VG-----GYEHVKVLQDIK 76 (662)
Q Consensus 6 ea~vflIDvs~sM~~--~l~~a~~~~~~l~~~ki~-~~~~D~VGvVlfgt~~t~n~l~~~-~~-----~y~nI~v~~~l~ 76 (662)
-+.+|+||+|.+.-+ .++.+.+.+...+.. +- ..++-+||+|.|++.-.--.+... .| .-.+..++.++.
T Consensus 188 p~yvFvIDvs~~av~~g~l~~~~~si~~~L~~-Lp~~~~~~~VGlITfd~~V~~~~l~~~~~g~k~~~~q~~mlvv~dl~ 266 (810)
T 1pcx_A 188 ATYCFLIDVSQSSIKSGLLATTINTLLQNLDS-IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLE 266 (810)
T ss_dssp CEEEEEEECSHHHHHHTHHHHHHHHHHHHTTT-SCCTTSCCEEEEEEESSSEEEEECCCGGGC-------CEEECCCCTT
T ss_pred cEEEEEEECChHHHhhhHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEecCccccCccccccchhhccccccc
Confidence 468999999976522 133444555544431 10 113579999999986432222110 00 012222322222
Q ss_pred CC---------------C---HHHHHHhhcC-CCC-CCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCC
Q 006065 77 VV---------------D---GHLVQSLKHL-PQG-TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDP 136 (662)
Q Consensus 77 ~~---------------~---~~~l~~L~~l-~~~-~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~ 136 (662)
.+ . ..+|+.|... ..+ .....+..||-+|..+|.. + .=||++||.+-...+.
T Consensus 267 d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~~a~G~AL~~A~~lL~~-~------GGrI~~F~sg~pt~Gp- 338 (810)
T 1pcx_A 267 EPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-V------GGKIIVVSGTLPNLGI- 338 (810)
T ss_dssp CC-----TTTSEETTTTHHHHHHHHHHHHHHTTTCCCCCCCHHHHHHHHHHHHTT-T------CEEEEEEESSCCCSST-
T ss_pred cccCCCcccccccHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHh-c------CCEEEEEecCCCCCCC-
Confidence 11 0 1245555553 222 2233578899999998753 1 2489999987543321
Q ss_pred CC----------CC----------chhhHHHHHHHHhhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeee
Q 006065 137 DV----------GT----------KEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 196 (662)
Q Consensus 137 ~~----------~~----------~~~~~~~ia~~l~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~ 196 (662)
+- +. ..+-.+.++.++...||.+++|.+...+ . +-..+..++..++|.++
T Consensus 339 G~l~~r~~~~~~~~~ke~~~l~~~a~~fY~~la~~~~~~gi~VDlF~~s~~~-----~-----dla~l~~l~~~TGG~v~ 408 (810)
T 1pcx_A 339 GKLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY-----M-----DVASLSNLSRFTAGQTH 408 (810)
T ss_dssp TCCCC--------------------CCHHHHHHHHHHHTTEEEEEEEEESSC-----C-----CHHHHHHHHHTTTCCEE
T ss_pred CcccccccccccCcccchhhhcccchHHHHHHHHHHHHCCeEEEEEEccCCc-----c-----ChHHHHHHHhcCCcEEE
Confidence 10 00 0112467889999999999999885311 1 13557788888999854
Q ss_pred ehh--------chHHhhcccccccCCcceeeeeeeeecCCeEEEEEEEe
Q 006065 197 FVD--------STTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYK 237 (662)
Q Consensus 197 ~~~--------~a~~ll~~~~~k~~~~~~~~~g~L~ig~~l~I~V~~Y~ 237 (662)
-.. +...+...+.. .+.....|.+.|++...-.|.|..|.
T Consensus 409 ~y~~F~~~~~~d~~~f~~dl~~-~l~~~~gf~a~mrVR~S~gl~v~~~~ 456 (810)
T 1pcx_A 409 FYPGFSGKNPNDIVKFSTEFAK-HISMDFCMETVMRARGSTGLRMSRFY 456 (810)
T ss_dssp EEETCCTTSHHHHHHHHHHHHH-HHHCCCCEEEEEEEEECTTEEEEEEE
T ss_pred EcCCCcchhhHHHHHHHHHHHH-HhhhhcceeEEEEEEcCCCeEEEEee
Confidence 221 11121111111 11112478888888755556676664
No 40
>3vi3_B Integrin beta-1; beta propeller fold, rossman fold, beta sandwich, fibronecti receptor, cell adhesion-immune system complex; HET: NAG BMA MAN; 2.90A {Homo sapiens} PDB: 3vi4_B*
Probab=95.69 E-value=0.1 Score=55.84 Aligned_cols=149 Identities=17% Similarity=0.133 Sum_probs=88.1
Q ss_pred EEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCC-----------cCccccc--cC-C--CcccEEE
Q 006065 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEE-----------TENELTK--EV-G--GYEHVKV 71 (662)
Q Consensus 8 ~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~-----------t~n~l~~--~~-~--~y~nI~v 71 (662)
++|++|+|.||...++..+.....|++.---..++=++|+..|.-.. -.|+-.. .. + +|+|+
T Consensus 125 LyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfGsFvDK~v~P~~~t~p~~~~nPC~~~~~c~~~f~fr~~-- 202 (454)
T 3vi3_B 125 LYYLMDLSYSMKDDLENVKSLGTDLMNEMRRITSDFRIGFGSFVEKTVMPYISTTPAKLRNPCTSEQNCTTPFSYKNV-- 202 (454)
T ss_dssp EEEEEECSGGGHHHHHHHTTHHHHHHHHHTTTCSSEEEEEEEECCCSSTTTSCCSTTTTTCCSCSSSCCCCCCSEEEE--
T ss_pred EEEEecCCcchhhHHHHHHHHHHHHHHHHHhcCCCeEEEEEEEeccccCCcccCChHHhcCCCcCccCCCCCcceeee--
Confidence 68999999999998888877777777543334578999999998542 1122100 00 1 56665
Q ss_pred EeccCCCCHHHHHHhhcCC-CCC--CCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCC---------C-
Q 006065 72 LQDIKVVDGHLVQSLKHLP-QGT--CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPD---------V- 138 (662)
Q Consensus 72 ~~~l~~~~~~~l~~L~~l~-~~~--~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~---------~- 138 (662)
.+|..-....-+.+.... +|. ..-.-+|||..|+---.+ .+=++ ..|-||++||+..-+.++. +
T Consensus 203 -l~LT~d~~~F~~~V~~~~isGn~D~PEgg~DAl~Qaavc~~~-igWR~-a~rllV~~TDa~fH~agDgkL~GIv~PNDg 279 (454)
T 3vi3_B 203 -LSLTNKGEVFNELVGKQRISGNLDSPEGGFDAIMQVAVCGSL-IGWRN-VTRLLVFSTDAGFHFAGDGKLGGIVLPNDG 279 (454)
T ss_dssp -EEEESCHHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHH-HTCCS-SEEEEEEEESSCBCCTTTTGGGTCCSCCCC
T ss_pred -eecCCCHHHHHHHHhhccccCCCcCCchhHHHHHHHhccccc-cCCcc-ceEEEEEECCCCcCcCCCccccceecCCCC
Confidence 455554445667777753 332 112347888766532111 24333 5666777788754222110 0
Q ss_pred -------------CCchhhHHHHHHHHhhCCcEEEE
Q 006065 139 -------------GTKEDQVSTIARQMVAFGLRMKN 161 (662)
Q Consensus 139 -------------~~~~~~~~~ia~~l~~~gI~l~v 161 (662)
..+.-.+.++++.|.+++|.+.+
T Consensus 280 ~CHL~~~~Yt~s~~~DYPSv~ql~~~l~e~nI~~IF 315 (454)
T 3vi3_B 280 QCHLENNMYTMSHYYDYPSIAHLVQKLSENNIQTIF 315 (454)
T ss_dssp CCCEETTEECCTTTSCCCCHHHHHHHHHHTTEEEEE
T ss_pred ccEeCCCcccccccCCCCCHHHHHHHHHhcCCcEEE
Confidence 01111478889999999986543
No 41
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=95.67 E-value=0.37 Score=55.85 Aligned_cols=126 Identities=11% Similarity=0.119 Sum_probs=75.0
Q ss_pred chhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCC--------------ch----------hhHHHHHHHH
Q 006065 97 DFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGT--------------KE----------DQVSTIARQM 152 (662)
Q Consensus 97 d~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~--------------~~----------~~~~~ia~~l 152 (662)
.+..||.+|..+|...+. ...=||++|+.+-...+ +.--. ++ +-.+.++..+
T Consensus 267 a~G~Al~~A~~lL~~~~~---~~GGrI~~F~sg~pt~G-pG~l~~r~~~~~~rs~~d~~ke~~~~~~~a~~fY~~la~~~ 342 (769)
T 2nut_A 267 SSGVALSIAVGLLECTFP---NTGARIMMFIGGPATQG-PGMVVGDELKTPIRSWHDIDKDNAKYVKKGTKHFEALANRA 342 (769)
T ss_dssp CHHHHHHHHHHHHHHHSC---SSCCEEEEEESSCCCSS-SSCCSCSBTTSCCCCHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhccc---CCCcEEEEEeCCCCCCC-CCCCcCcccccccccccccccchhhhccchHHHHHHHHHHH
Confidence 578999999999875222 22467999998744332 11000 00 1146689999
Q ss_pred hhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeeeehh---ch---HHhhcccccccCCc--ceeeeeeee
Q 006065 153 VAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVD---ST---TSLRGARKTRDISP--VTIFRGDLE 224 (662)
Q Consensus 153 ~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~~~---~a---~~ll~~~~~k~~~~--~~~~~g~L~ 224 (662)
.+.||.+++|..+... -+-..+..++..++|.++... .. .++...+. |.... ...|.+.|+
T Consensus 343 ~~~gi~VDlF~~~~~~----------vdla~l~~l~~~TGG~~~~~~~F~~~~~~~~l~~~~~-~~~~~~l~~gf~a~mr 411 (769)
T 2nut_A 343 ATTGHVIDIYACALDQ----------TGLLEMKCCPNLTGGYMVMGDSFNTSLFKQTFQRVFT-KDMHGQFKMGFGGTLE 411 (769)
T ss_dssp HHHTCEEEEEEECSSC----------CCHHHHTHHHHHSSCCEEEESCSSSHHHHHHHHHTTC-BCTTSCBSCEEEEEEE
T ss_pred HHCCeEEEEEeccCCc----------cChHHHHHHhhcCCceEEEcCCCchhhHHHHHHHHHh-hhcccccceEEEEEEE
Confidence 9999999999884311 123557778888999865332 21 12222232 22211 247888888
Q ss_pred ecCCeEEEEEEEe
Q 006065 225 LSEKMKIKVWVYK 237 (662)
Q Consensus 225 ig~~l~I~V~~Y~ 237 (662)
+-..=.|.|..|.
T Consensus 412 Vr~S~gl~v~~~~ 424 (769)
T 2nut_A 412 IKTSREIKISGAI 424 (769)
T ss_dssp EEECTTEEEEEEE
T ss_pred EEecCCeEEEeee
Confidence 8754455566654
No 42
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=95.13 E-value=0.16 Score=59.95 Aligned_cols=213 Identities=9% Similarity=0.075 Sum_probs=113.7
Q ss_pred eEEEEEEeCCCCcCC--chhHHHHHHHHHHHHHHh-ccCccEEEEEEEcCCCcCccccccCC------CcccEEEEeccC
Q 006065 6 EALLLLLDVSPSMHS--VLPDVEKLCSRLIQKKLI-YGKNHEVGVILFGTEETENELTKEVG------GYEHVKVLQDIK 76 (662)
Q Consensus 6 ea~vflIDvs~sM~~--~l~~a~~~~~~l~~~ki~-~~~~D~VGvVlfgt~~t~n~l~~~~~------~y~nI~v~~~l~ 76 (662)
-+.|||||+|.+.-+ .+..+.+.+...+.. +- ..++-+||+|.|++.-.--.+..... .-....++.++.
T Consensus 304 pvyvFvIDvS~~av~~g~l~~l~~sI~~~L~~-LP~~~~~~~VGlITFds~Vh~y~l~~~~~g~k~~~~q~qmlvvsdl~ 382 (926)
T 1m2v_B 304 ATYCFLIDVSQSSIKSGLLATTINTLLQNLDS-IPNHDERTRISILCVDNAIHYFKIPLDSENNEESADQINMMDIADLE 382 (926)
T ss_dssp CBEEEEEECSHHHHHSCHHHHHHHHHHHTTTT-SCCTTSCCEECEEEESSSEEEEECCCC---------CCEEEEECCCS
T ss_pred cEEEEEEECCHHHHhhhHHHHHHHHHHHHHHh-CCCCCCCcEEEEEEECCEEEEEecCCcccCCcccccchhhccccccc
Confidence 357999999965421 134444555444431 10 11257999999998643222211100 013334444432
Q ss_pred CC--------------CH----HHHHHhhcC-CCC-CCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCC
Q 006065 77 VV--------------DG----HLVQSLKHL-PQG-TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDP 136 (662)
Q Consensus 77 ~~--------------~~----~~l~~L~~l-~~~-~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~ 136 (662)
.+ +. .+|+.|... ..+ .....+..||-+|+.+|.. + .=||++|+.+-...+..
T Consensus 383 d~f~P~~~~~Lv~l~e~~~~I~~lLe~L~~~~~~~~~~~~~~G~AL~aA~~lL~~-~------GGrI~~F~sg~Pt~GpG 455 (926)
T 1m2v_B 383 EPFLPRPNSMVVSLKACRQNIETLLTKIPQIFQSNLITNFALGPALKSAYHLIGG-V------GGKIIVVSGTLPNLGIG 455 (926)
T ss_dssp SCCCSCSSSSSEETTTTHHHHHHHHHHHHHHTSSCCCCCCCHHHHHHHHHHHHTT-T------CEEEEEEESSCCCSSTT
T ss_pred cccCCCcccccccHHHHHHHHHHHHHhhhhhhcCCCCCCccHHHHHHHHHHHHHh-h------CCEEEEEecCCCCCCCC
Confidence 11 01 245555553 222 2233578899999998753 1 23799999875433210
Q ss_pred C----C-----CCchh----------hHHHHHHHHhhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeeee
Q 006065 137 D----V-----GTKED----------QVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLF 197 (662)
Q Consensus 137 ~----~-----~~~~~----------~~~~ia~~l~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~ 197 (662)
. + +.+++ -.+.++.++...||.+++|.+...+ . +-..+..++..++|.++-
T Consensus 456 ~l~~re~~~~~~~~ke~~~ll~~a~~FYk~LA~~~~~~gisVDlF~~s~~~-----v-----dla~l~~l~~~TGG~v~~ 525 (926)
T 1m2v_B 456 KLQRRNESGVVNTSKETAQLLSCQDSFYKNFTIDCSKVQITVDLFLASEDY-----M-----DVASLSNLSRFTAGQTHF 525 (926)
T ss_dssp CCCCCCC----CCTTHHHHHTSCSSTHHHHHHHHHHHHTEEEEEEEEESSC-----C-----CHHHHHHHHHTTTCCEEE
T ss_pred cccccccccccCcccchhhhccchHHHHHHHHHHHHHcCeEEEEEEccCCC-----c-----ChHHHHHHHhcCCceEEE
Confidence 0 0 01111 2478899999999999999884311 1 135577888889998542
Q ss_pred h---h-----chHHhhcccccccCCcceeeeeeeeecCCeEEEEEEEe
Q 006065 198 V---D-----STTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYK 237 (662)
Q Consensus 198 ~---~-----~a~~ll~~~~~k~~~~~~~~~g~L~ig~~l~I~V~~Y~ 237 (662)
. . +...+...+.. .+.....|.+.|++...-.|.|..|.
T Consensus 526 y~~F~~~~~~d~~kf~~dl~~-~Lt~~~gf~a~mrVR~S~glkv~~~~ 572 (926)
T 1m2v_B 526 YPGFSGKNPNDIVKFSTEFAK-HISMDFCMETVMRARGSTGLRMSRFY 572 (926)
T ss_dssp EESCCTTSHHHHHHHHHHHHH-HHHSCCEEEEEEEEEECTTEEEEEEE
T ss_pred cCCCcchhhhHHHHHHHHHHH-HhhhhhceeEEEEEEeCCCcEEEEee
Confidence 2 1 11221111111 11112478888888755556666664
No 43
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting, fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B* 2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B* 2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B* 1tye_B*
Probab=94.56 E-value=0.1 Score=56.34 Aligned_cols=149 Identities=18% Similarity=0.176 Sum_probs=86.6
Q ss_pred EEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCc------------Cccccc---cC-C--CcccE
Q 006065 8 LLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEET------------ENELTK---EV-G--GYEHV 69 (662)
Q Consensus 8 ~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t------------~n~l~~---~~-~--~y~nI 69 (662)
++|++|+|.||...++.++.....|++.---..++=++|+..|.-... .|+-.. .. + +|+|+
T Consensus 114 Ly~LmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~riGfgsFvDk~v~P~~~~~p~~~l~nPc~~~~~~c~p~f~fr~~ 193 (472)
T 3t3p_B 114 IYYLMDLSYSMKDDLWSIQNLGTKLATQMRKLTSNLRIGFGAFVDKPVSPYMYISPPEALENPCYDMKTTCLPMFGYKHV 193 (472)
T ss_dssp EEEEEECSGGGHHHHHHTTTHHHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCSHHHHHCTTTTTTSCCCCCCSEEEE
T ss_pred EEEEEccCcchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEEeeccccCccccCChhhhhcCCCcccccCCCCCcceeEe
Confidence 789999999999988877777776665432245789999999986421 122100 00 1 56665
Q ss_pred EEEeccCCCCHHHHHHhhcCC-CCC--CCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCC---------
Q 006065 70 KVLQDIKVVDGHLVQSLKHLP-QGT--CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPD--------- 137 (662)
Q Consensus 70 ~v~~~l~~~~~~~l~~L~~l~-~~~--~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~--------- 137 (662)
.+|..-.....+.+.... ++. ..-.-+|||..|+---. +.+=+....|-||++||+..-..++.
T Consensus 194 ---l~LT~d~~~F~~~V~~~~iSGn~D~PEgg~dAl~qaavC~~-~igWR~~a~rllV~~TDa~~H~agDgkL~GIv~pn 269 (472)
T 3t3p_B 194 ---LTLTDQVTRFNEEVKKQSVSRNRDAPEGGFDAIMQATVCDE-KIGWRNDASHLLVFTTDAKTHIALDGRLAGIVQPN 269 (472)
T ss_dssp ---EEEESCHHHHHHHHHHCCCCCCSSSSBCHHHHHHHHHHCHH-HHTCCSSSEEEEEEEESSCBCCTTGGGGGTCCCCC
T ss_pred ---eccCCCHHHHHHHHhhccccCCCCCCchHHHHHHHHhcchh-hcCCCCCceEEEEEECCCCcCcCCCccccceecCC
Confidence 456554445666777753 332 12235788887653211 12323344666777888754221100
Q ss_pred --------C-------CCchhhHHHHHHHHhhCCcEEE
Q 006065 138 --------V-------GTKEDQVSTIARQMVAFGLRMK 160 (662)
Q Consensus 138 --------~-------~~~~~~~~~ia~~l~~~gI~l~ 160 (662)
+ ..+.-.+.++++.|.+.+|.+.
T Consensus 270 Dg~CHL~~~~~Y~~s~~~DYPSv~ql~~~l~e~nI~~I 307 (472)
T 3t3p_B 270 DGQCHVGSDNHYSASTTMDYPSLGLMTEKLSQKNINLI 307 (472)
T ss_dssp CCCCCBCTTCBBTTTTTSCCCCHHHHHHHHHHTTCEEE
T ss_pred CCceEECCCCcccccccCCCCCHHHHHHHHHhcCccEE
Confidence 0 0111147788888999987653
No 44
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Probab=94.56 E-value=0.14 Score=55.55 Aligned_cols=152 Identities=17% Similarity=0.160 Sum_probs=89.2
Q ss_pred EEEEEEeCCCCcCCchhHHHHHHHHHHHHHHhccCccEEEEEEEcCCCc-----------Cccccc------cCCCcccE
Q 006065 7 ALLLLLDVSPSMHSVLPDVEKLCSRLIQKKLIYGKNHEVGVILFGTEET-----------ENELTK------EVGGYEHV 69 (662)
Q Consensus 7 a~vflIDvs~sM~~~l~~a~~~~~~l~~~ki~~~~~D~VGvVlfgt~~t-----------~n~l~~------~~~~y~nI 69 (662)
-++|++|+|.||...++..+.....|++.---..++=++|+..|..... .|+-.. ..=+|+|+
T Consensus 134 DLyyLmDlS~SM~ddl~~lk~lg~~L~~~l~~~t~~~RiGfGsFvDK~v~P~~~~~p~~l~~PC~~~~~~c~p~f~fr~~ 213 (503)
T 3v4v_B 134 DLYYLMDLSYSMKDDLERVRQLGHALLVRLQEVTHSVRIGFGSFVDKTVLPFVSTVPSKLRHPCPTRLERCQSPFSFHHV 213 (503)
T ss_dssp EEEEEEECSGGGHHHHHHHHHSSHHHHHHHTTTCSCEEEEEEEECCCSSTTTSCCCHHHHHCCSSCSSSCCCCCCSEEEE
T ss_pred eEEEEEecCcchhhHHHHHHHHHHHHHHHHHhhCcCcEEeeeeecccccCCcccCCHHHhcCCCcCCCCCCCCCcceEEE
Confidence 3789999999999988888877777766433345889999999975421 111100 00156665
Q ss_pred EEEeccCCCCHHHHHHhhcCC-CCC--CCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCC---------
Q 006065 70 KVLQDIKVVDGHLVQSLKHLP-QGT--CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPD--------- 137 (662)
Q Consensus 70 ~v~~~l~~~~~~~l~~L~~l~-~~~--~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~--------- 137 (662)
.+|..-.....+.+.... +|. ..-.-+|||..|+---.+ .+=+ ...|-||++||+..-..++.
T Consensus 214 ---l~LT~d~~~F~~~V~~~~iSGnlD~PEggfDAlmQaavC~~~-IgWR-~a~rllV~~TDA~fH~agDgkLaGIv~pN 288 (503)
T 3v4v_B 214 ---LSLTGDAQAFEREVGRQSVSGNLDSPEGGFDAILQAALCQEQ-IGWR-NVSRLLVFTSDDTFHTAGDGKLGGIFMPS 288 (503)
T ss_dssp ---EEEESCSHHHHHHHTTCCCCCCSSSSBCHHHHHHHHHHCHHH-HTCC-SSEEEEEEEESSCBCCTTGGGTTTCCSCC
T ss_pred ---EEecCCHHHHHHHHhhcCccCCCCCCchHHHHHHHHhhcccc-cCCC-cceEEEEEECCCCcCcCCCccccceecCC
Confidence 456655556777787753 332 122357888766532111 2322 24667778888754221100
Q ss_pred --------CC-------CchhhHHHHHHHHhhCCcEEEEEee
Q 006065 138 --------VG-------TKEDQVSTIARQMVAFGLRMKNIVV 164 (662)
Q Consensus 138 --------~~-------~~~~~~~~ia~~l~~~gI~l~vi~i 164 (662)
++ .+.-.+.++++.|.+.+|.+. |.+
T Consensus 289 Dg~CHL~~~~~Yt~s~~~DYPSv~ql~~kL~ennI~~I-FAV 329 (503)
T 3v4v_B 289 DGHCHLDSNGLYSRSTEFDYPSVGQVAQALSAANIQPI-FAV 329 (503)
T ss_dssp CSSCCBCTTSBBGGGGGSCCCCHHHHHHHHHHHTEEEE-EEE
T ss_pred CCCeEECCCCccccccccCCCCHHHHHHHHHhcCCeEE-EEE
Confidence 00 011136778888988888543 444
No 45
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=94.38 E-value=1.3 Score=51.28 Aligned_cols=127 Identities=12% Similarity=0.097 Sum_probs=73.6
Q ss_pred chhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCCCCC--------------ch----------hhHHHHHHHH
Q 006065 97 DFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPDVGT--------------KE----------DQVSTIARQM 152 (662)
Q Consensus 97 d~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~~~~--------------~~----------~~~~~ia~~l 152 (662)
.+..||.+|..+|...+. ...=||++|+.+-...+ ++--. .+ +-.+.++.++
T Consensus 261 ~~G~Al~~A~~ll~~~~~---~~GGrI~~F~sg~pt~G-pG~l~~r~~~~~~rs~~d~~k~~~~~~~~a~~fY~~la~~~ 336 (768)
T 1m2o_A 261 ATGSALNIASLLLQGCYK---NIPARIILFASGPGTVA-PGLIVNSELKDPLRSHHDIDSDHAQHYKKACKFYNQIAQRV 336 (768)
T ss_dssp CHHHHHHHHHHHHHHHCT---TSCCEEEEEESSCCCSS-SSCCSCSBTTSCCCCHHHHHHTCCTTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccC---CCCcEEEEEeCCCCCCC-CccccccccccccccccccccchhhhcCchHHHHHHHHHHH
Confidence 578999999999875211 22467999998844322 11000 00 1236788899
Q ss_pred hhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeeee---hhch--HHhhcccccccCC--cceeeeeeeee
Q 006065 153 VAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLF---VDST--TSLRGARKTRDIS--PVTIFRGDLEL 225 (662)
Q Consensus 153 ~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~---~~~a--~~ll~~~~~k~~~--~~~~~~g~L~i 225 (662)
...||.+++|..... .. +-..+..++..++|.++- +... .+.+.+.-.|... ....|.+.|++
T Consensus 337 ~~~gi~VDlF~~~~~-----~~-----dla~l~~l~~~TGG~v~~y~~f~~~~~~~~l~r~l~~~~~~~~~~gf~a~mrV 406 (768)
T 1m2o_A 337 AANGHTVDIFAGCYD-----QI-----GMSEMKQLTDSTGGVLLLTDAFSTAIFKQSYLRLFAKDEEGYLKMAFNGNMAV 406 (768)
T ss_dssp HHHTCEEEEEEECSS-----CC-----SHHHHHHHHHHHTCCEEEESCTTSHHHHHHHHHTTCBCTTSSBSCEEEEEEEE
T ss_pred HHCCeEEEEEEccCC-----cc-----ChHHHhhHhhcCCceEEEcCCCchHHHHHHHHHHHhhccccccceEEEEEEEE
Confidence 999999999988431 11 135577788889998642 2221 1112221222111 02478888888
Q ss_pred cCCeEEEEEEEe
Q 006065 226 SEKMKIKVWVYK 237 (662)
Q Consensus 226 g~~l~I~V~~Y~ 237 (662)
-..=.|.|..|.
T Consensus 407 r~S~gl~v~~~~ 418 (768)
T 1m2o_A 407 KTSKDLKVQGLI 418 (768)
T ss_dssp EECTTEEEEEEE
T ss_pred EecCCceEEEee
Confidence 754556666654
No 46
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=93.10 E-value=0.95 Score=52.20 Aligned_cols=208 Identities=14% Similarity=0.139 Sum_probs=107.0
Q ss_pred eEEEEEEeCCCCcCC--chhHHHHHHHHHHHHHHhccCcc---EEEEEEEcCCCcCccccccCCCcccEEEEeccCCC--
Q 006065 6 EALLLLLDVSPSMHS--VLPDVEKLCSRLIQKKLIYGKNH---EVGVILFGTEETENELTKEVGGYEHVKVLQDIKVV-- 78 (662)
Q Consensus 6 ea~vflIDvs~sM~~--~l~~a~~~~~~l~~~ki~~~~~D---~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l~~~-- 78 (662)
=+.+|+||+|..--+ .++.+.+.+...+. .-+.| +||+|.|++.-.=-++.... .-.+..++.+++.+
T Consensus 161 p~yvFvIDvs~~a~~~g~l~~~~~sl~~~L~----~lp~~~~~~VG~ITfd~~vh~y~l~~~~-~~~qmlvv~dl~d~f~ 235 (751)
T 3eh1_A 161 AVYLFVLDVSHNAVEAGYLTILCQSLLENLD----KLPGDSRTRIGFMTFDSTIHFYNLQEGL-SQPQMLIVSDIDDVFL 235 (751)
T ss_dssp CEEEEEEECSHHHHHHTHHHHHHHHHHHHTT----TSSCCTTCEEEEEEESSSEEEEECCTTC-SSCEEEEESCTTCTTS
T ss_pred cEEEEEEEccHhhhhhhHHHHHHHHHHHHHH----hcCCCcCcEEEEEEeCCEEEEEECCCCc-ccceeeccccccccCC
Confidence 467999999843111 12333444443333 33333 89999999864322221110 11223333333211
Q ss_pred -C-----------H----HHHHHhhcCCCCC--CCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCCCC---
Q 006065 79 -D-----------G----HLVQSLKHLPQGT--CAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKDPD--- 137 (662)
Q Consensus 79 -~-----------~----~~l~~L~~l~~~~--~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~~~--- 137 (662)
. . .+|+.|......+ ....+..||-+|..++.. + .=||++|+.+-...+ ++
T Consensus 236 P~~~~~lv~l~e~~~~i~~lL~~Lp~~~~~~~~~~~~~G~AL~aA~~ll~~-~------GGrI~~F~sg~pt~G-pG~l~ 307 (751)
T 3eh1_A 236 PTPDSLLVNLYESKELIKDLLNALPNMFTNTRETHSALGPALQAAFKLMSP-T------GGRVSVFQTQLPSLG-AGLLQ 307 (751)
T ss_dssp CCGGGTSEETTTTHHHHHHHHHHGGGTSTTCSCCCCCHHHHHHHHHHHHTT-T------CEEEEEEECSCCCSS-TTCCC
T ss_pred CChhhhcccHHHHHHHHHHHHHhhhHhhcCCCCCccchHHHHHHHHHHhhc-C------CCEEEEEecCCCCCC-CCccc
Confidence 1 1 1244444432221 233577899999988642 1 247888887643322 11
Q ss_pred ---CC-------------CchhhHHHHHHHHhhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeeeehhc-
Q 006065 138 ---VG-------------TKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTLFVDS- 200 (662)
Q Consensus 138 ---~~-------------~~~~~~~~ia~~l~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~~~~~- 200 (662)
+. ...+-.+.+|.++...||.+++|.....+ . +-..+..++..++|.++-...
T Consensus 308 ~r~~~~~~~~~ke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~~-----~-----dlatl~~l~~~TGG~v~~y~~F 377 (751)
T 3eh1_A 308 SREDPNQRSSTKVVQHLGPATDFYKKLALDCSGQQTAVDLFLLSSQY-----S-----DLASLACMSKYSAGCIYYYPSF 377 (751)
T ss_dssp CCCCSCGGGGSSSCTTCSCSCSHHHHHHHHHHHTTEEEEEEECCSSC-----C-----CHHHHTHHHHTTTCCEEECTTC
T ss_pred cccccccCCCchhhhhhcchHHHHHHHHHHHHhcCceEEEEEccCcc-----c-----ChHhHHHHHhhcCceEEEeCCc
Confidence 00 01124688999999999999999874311 1 124566778888997643221
Q ss_pred --h------HHhhcccccccCCcceeeeeeeeecCCeEEEEEEEe
Q 006065 201 --T------TSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYK 237 (662)
Q Consensus 201 --a------~~ll~~~~~k~~~~~~~~~g~L~ig~~l~I~V~~Y~ 237 (662)
. ..+...++. .+.....|.+.|++...=.|.|..|.
T Consensus 378 ~~~~~~~~~~~f~~dl~r-~l~~~~gf~a~mrVR~S~glkv~~~~ 421 (751)
T 3eh1_A 378 HYTHNPSQAEKLQKDLKR-YLTRKIGFEAVMRIRCTKGLSMHTFH 421 (751)
T ss_dssp BTTTBHHHHHHHHHHHHH-HHHSCCEEEEEEEEEECTTEEEEEEE
T ss_pred ccccchhHHHHHHHHHHH-HHhhhhccceEEEEEecCCeEEEEee
Confidence 1 111111111 11112478888888644445555553
No 47
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=92.22 E-value=2.8 Score=48.48 Aligned_cols=211 Identities=13% Similarity=0.197 Sum_probs=108.2
Q ss_pred eEEEEEEeCCCC-cCC-chhHHHHHHHHHHHHHHhccCc--------cEEEEEEEcCCCcCccccccCCCcccEEEEecc
Q 006065 6 EALLLLLDVSPS-MHS-VLPDVEKLCSRLIQKKLIYGKN--------HEVGVILFGTEETENELTKEVGGYEHVKVLQDI 75 (662)
Q Consensus 6 ea~vflIDvs~s-M~~-~l~~a~~~~~~l~~~ki~~~~~--------D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l 75 (662)
=+.+|+||+|.. ... .++.+.+.+...+. .-+. -+||+|.|++.-.=-++...... .+..++.++
T Consensus 178 p~y~FvIDvs~~av~sg~l~~~~~sl~~~L~----~lP~~~~~~~~~~~VG~ITfd~~vh~y~l~~~~~q-~q~~vv~d~ 252 (770)
T 3efo_B 178 PAFIFMIDVSYSNIKNGLVKLICEELKTMLE----KIPKEEQEETSAIRVGFITYNKVLHFFNVKSNLAQ-PQMMVVTDV 252 (770)
T ss_dssp CEEEEEEECSHHHHHTTHHHHHHHHHHHHGG----GCCCCTTSSSCSCEEEEEEESSSEEEEECCTTCSS-CEEEEECCT
T ss_pred cEEEEEEEcchhhccchHHHHHHHHHHHHHH----hCCccccccCccceEEEEEeCCEEEEEeCCCcccC-ceEEEeccc
Confidence 367899999853 211 23445555555554 3343 49999999986332222111001 122233332
Q ss_pred CCC--------------CH----HHHHHhhcC-CCC-CCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCC
Q 006065 76 KVV--------------DG----HLVQSLKHL-PQG-TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKD 135 (662)
Q Consensus 76 ~~~--------------~~----~~l~~L~~l-~~~-~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~ 135 (662)
+.+ +. .+|+.|.+. ... ....-+..||.+|+..+.. .. . .=||++|+.+--...+
T Consensus 253 ~d~f~P~~~~~Lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~--~~--~-GGkI~~F~s~lP~t~G 327 (770)
T 3efo_B 253 GEVFVPLLDGFLVNYQESQSVIHNLLDQIPDMFADSNENETVFAPVIQAGMEALKA--AD--C-PGKLFIFHSSLPTAEA 327 (770)
T ss_dssp TSCCCCCSSSSSBCTTTTHHHHHHHHHHHHHHHHTCCCCCCCCHHHHHHHHHHHHH--HT--C-CEEEEEEECSCCCSSS
T ss_pred ccccCCCccceeeeHHHHHHHHHHHHHhhHhhccCCCCCcchHHHHHHHHHHHhcc--CC--C-CcEEEEEecCCCCcCC
Confidence 211 01 133444332 111 1223456778888877643 11 1 2378888776221111
Q ss_pred CC------C-------------CCchhhHHHHHHHHhhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeee
Q 006065 136 PD------V-------------GTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 196 (662)
Q Consensus 136 ~~------~-------------~~~~~~~~~ia~~l~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~ 196 (662)
++ + ....+-.+.++.++.+.||.+++|..... .. +-..+..++..++|.++
T Consensus 328 pG~l~~r~~~~~~~t~ke~~~~~~a~~fY~~lA~~~~~~~i~VDlF~~s~~-----~v-----dlatl~~l~~~TGG~v~ 397 (770)
T 3efo_B 328 PGKLKNRDDKKLVNTDKEKILFQPQTNVYDSLAKDCVAHGCSVTLFLFPSQ-----YV-----DVASLGLVPQLTGGTLY 397 (770)
T ss_dssp TTCCCCCCCCCCSSCSCGGGGGSCSSSHHHHHHHHHHHTTEEEEEEECCSS-----CC-----CHHHHTHHHHHTTCCEE
T ss_pred CccccccccccccCCcchhhhhcchHHHHHHHHHHHHHcCeEEEEEEecCC-----cc-----ChHHHHHHHhhcCceEE
Confidence 10 0 00112467899999999999999987431 11 12456678888899864
Q ss_pred ehhc------hHHhhcccccccCCcceeeeeeeeecCCeEEEEEEEe
Q 006065 197 FVDS------TTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYK 237 (662)
Q Consensus 197 ~~~~------a~~ll~~~~~k~~~~~~~~~g~L~ig~~l~I~V~~Y~ 237 (662)
.... ...+...++. .+.....|.+.|++...=.|.|..|.
T Consensus 398 ~y~~F~~~~~~~~f~~dl~~-~l~~~~gf~a~mrVR~S~gl~v~~~~ 443 (770)
T 3efo_B 398 KYNNFQMHLDRQQFLNDLRN-DIEKKIGFDAIMRVRTSTGFRATDFF 443 (770)
T ss_dssp ECTTCCHHHHHHHHHHHHHH-HHHSCEEEEEEEEEEECTTEEEEEEE
T ss_pred EecCCcchhHHHHHHHHHHH-hhhhceeeeEEEEEEecCCeEEEEeE
Confidence 3322 1222222221 12122478888888644455566664
No 48
>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}
Probab=92.09 E-value=3.4 Score=47.72 Aligned_cols=212 Identities=13% Similarity=0.147 Sum_probs=109.5
Q ss_pred eEEEEEEeCCCCc-C-CchhHHHHHHHHHHHHHHhccCc--------cEEEEEEEcCCCcCccccccCCCcccEEEEecc
Q 006065 6 EALLLLLDVSPSM-H-SVLPDVEKLCSRLIQKKLIYGKN--------HEVGVILFGTEETENELTKEVGGYEHVKVLQDI 75 (662)
Q Consensus 6 ea~vflIDvs~sM-~-~~l~~a~~~~~~l~~~ki~~~~~--------D~VGvVlfgt~~t~n~l~~~~~~y~nI~v~~~l 75 (662)
=+.+|+||+|..- . ..+..+.+.+...+. .-+. -+||+|.|++.-.=-++..+ ..-.+..|+.++
T Consensus 174 p~y~FvIDvs~~av~sg~l~~~~~si~~~L~----~lp~~~~~~~~~~~VG~ITfd~~vh~y~l~~~-~~~~q~~vv~dl 248 (766)
T 3eh2_A 174 PAFIFMIDVSYNAIRTGLVRLLCEELKSLLD----FLPREGGAEESAIRVGFVTYNKVLHFYNVKSS-LAQPQMMVVSDV 248 (766)
T ss_dssp CEEEEEEECSHHHHHTTHHHHHHHHHHHHGG----GCCCCSSCSSCCCEEEEEEESSSEEEEECCTT-CSSCEEEEECCT
T ss_pred CEEEEEEECchhhccchHHHHHHHHHHHHHH----hCCcccccCCccceEEEEEeCCEEEEEECCCC-CCCceEEEecCh
Confidence 3678999998431 1 123444555555554 3333 58999999986432222111 012234444443
Q ss_pred CCCC--------------H----HHHHHhhcCCCC--CCCCchhhHHHHHHHHHHHHhccCCcccceEEEEeCCCCCCCC
Q 006065 76 KVVD--------------G----HLVQSLKHLPQG--TCAGDFLDAIVVGVDMLIKKYGETYKGKKHLCLITDALCPLKD 135 (662)
Q Consensus 76 ~~~~--------------~----~~l~~L~~l~~~--~~~gd~~daL~va~d~l~~~~~~kk~~~krIvLiTD~~~p~~~ 135 (662)
+.+- . .+|+.|...... ....-+..||.+|+..+.. . ...=||++|+.+--...+
T Consensus 249 ~d~f~P~~~~~lv~l~e~~~~i~~lL~~L~~~~~~~~~~~t~~g~al~aa~~~l~~--~---~~GGkI~~F~s~lP~t~G 323 (766)
T 3eh2_A 249 ADMFVPLLDGFLVNVNESRAVITSLLDQIPEMFADTRETETVFVPVIQAGMEALKA--A---ECAGKLFLFHTSLPIAEA 323 (766)
T ss_dssp TTCCCCCCTTSSBCTTTTHHHHHHHHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHH--T---TCCEEEEEEECSCCCSSS
T ss_pred hhhccccccceeEeHHHHHHHHHHHHHhhhhhccCCCCCcchHHHHHHHHHHHhcc--C---CCCcEEEEEecCCCCcCC
Confidence 2110 1 123444432111 1223456778888777643 1 124578888766221111
Q ss_pred CC------C-------------CCchhhHHHHHHHHhhCCcEEEEEeeccCCCCCCCcchhhhhhHHHHHHhhccCCeee
Q 006065 136 PD------V-------------GTKEDQVSTIARQMVAFGLRMKNIVVRASLSGEPHMRVIIENDNLLNIFSKKSSAKTL 196 (662)
Q Consensus 136 ~~------~-------------~~~~~~~~~ia~~l~~~gI~l~vi~i~~~~~~~~~~~~~~~ne~~L~~l~~~~~g~~~ 196 (662)
++ + ....+-.+.++.++.+.||.+++|..... .. +-..+..++..++|.++
T Consensus 324 pG~l~~r~~~~~~~sdke~~~~~~a~~fY~~la~~~~~~~i~VDlF~~s~~-----~v-----dlatl~~l~~~TGG~v~ 393 (766)
T 3eh2_A 324 PGKLKNRDDRKLINTDKEKTLFQPQTGAYQTLAKECVAQGCCVDLFLFPNQ-----YV-----DVATLSVVPQLTGGSVY 393 (766)
T ss_dssp TTCCCCCCCGGGTTSTTGGGGTSCSSTHHHHHHHHHHHHTEEEEEEECCSS-----CC-----CHHHHTHHHHHTTCCEE
T ss_pred CcccccccccccCCCcchhhhccchHHHHHHHHHHHHhCCeEEEEEEecCC-----Cc-----ChHHHHHHHhhcCceEE
Confidence 10 0 00113457899999999999999987431 11 13456677888899864
Q ss_pred ehhc------hHHhhcccccccCCcceeeeeeeeecCCeEEEEEEEee
Q 006065 197 FVDS------TTSLRGARKTRDISPVTIFRGDLELSEKMKIKVWVYKK 238 (662)
Q Consensus 197 ~~~~------a~~ll~~~~~k~~~~~~~~~g~L~ig~~l~I~V~~Y~~ 238 (662)
-... ...+...++.--.+. ..|.+.|++...=.|.|..|.-
T Consensus 394 ~y~~F~~~~d~~~f~~dl~~~l~~~-~gf~a~mrVR~S~glkv~~~~G 440 (766)
T 3eh2_A 394 KYASFQVENDQERFLSDLRRDVQKV-VGFDAVMRVRTSTGIRAVDFFG 440 (766)
T ss_dssp ECTTCCHHHHHHHHHHHHHHHHHSC-EEEEEEEEEEECTTEEEEEEEE
T ss_pred EeCCCcchhHHHHHHHHHHHHhhhc-ceeeEEEEEEecCCeEEEEeEC
Confidence 3222 111222222111122 4788888886544556666643
No 49
>3si5_X Protein CASC5; BUBR1-blinkin complex, mitotic checkpoint, BUBR1, blinkin/KN chromosome segregation, cell cycle; 2.20A {Homo sapiens}
Probab=46.78 E-value=8.8 Score=22.70 Aligned_cols=12 Identities=8% Similarity=0.152 Sum_probs=10.0
Q ss_pred hhHHHHHHHHHH
Q 006065 629 YLSVSFFLLWFA 640 (662)
Q Consensus 629 ~~~~N~fl~~lk 640 (662)
--.||+|++.||
T Consensus 10 KinfndFIKRLK 21 (24)
T 3si5_X 10 KIDFNDFIKRLK 21 (26)
T ss_pred hccHHHHHHHHh
Confidence 347999999998
No 50
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=30.86 E-value=1.5e+02 Score=29.27 Aligned_cols=83 Identities=12% Similarity=0.153 Sum_probs=62.8
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHHHHhhccC-CC-CCchHHHHHHHHHHHHHhhhhhchhHHHHHHHHHHHHH-----
Q 006065 571 DFEAMMSRRDCPDWVDKAIEDMKNKIFGLLENS-NE-GINYPKAVELLVALRKGCILEQVYLSVSFFLLWFAFAF----- 643 (662)
Q Consensus 571 dF~~~l~~~~~~~~~~~a~~qm~~~I~~lv~~s-~~-~~~y~ka~~~l~~~R~~~i~~~e~~~~N~fl~~lk~~f----- 643 (662)
.|.. |.-.+.++.++..-+|..+-|.+||..+ .+ ...-+..-+.-..|++-+..+.+...|+.=+.++|++|
T Consensus 21 ~fh~-l~~~d~s~~~~~~~~q~~~~l~~~~~~~~~~~~~~~~~v~~l~~~y~~l~~~~~~~~~~~~~~~~~K~~yk~~~d 99 (267)
T 3htk_C 21 YFHN-LHARDLSNIYQQCYKQIDETINQLVDSTSPSTIGIEEQVADITSTYKLLSTYESESNSFDEHIKDLKKNFKQSSD 99 (267)
T ss_dssp HHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhc-CchhhhHHHHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3666 4444556789999999999999999843 22 12345666677788888888889999999999999555
Q ss_pred ---------hhccccCCcee
Q 006065 644 ---------WDNSCLNDMSS 654 (662)
Q Consensus 644 ---------W~~~~~~~~~~ 654 (662)
|+.+..++.+.
T Consensus 100 ~~~~~~~~twd~y~~~e~~a 119 (267)
T 3htk_C 100 ACPQIDLSTWDKYRTGELTA 119 (267)
T ss_dssp TSCCCCTTHHHHHHHTSSCC
T ss_pred cCCCCCHHHHHHHhcCCcCC
Confidence 88888887764
No 51
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=29.92 E-value=61 Score=25.49 Aligned_cols=31 Identities=13% Similarity=-0.020 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHHHHhhhhhchhHHHHHHHHHH
Q 006065 608 NYPKAVELLVALRKGCILEQVYLSVSFFLLWFA 640 (662)
Q Consensus 608 ~y~ka~~~l~~~R~~~i~~~e~~~~N~fl~~lk 640 (662)
..+.|+.-|...++.+. ++|+.|++||+-|+
T Consensus 3 ~~~dA~~yl~~VK~~F~--~~p~~Y~~FL~im~ 33 (77)
T 2czy_A 3 HVEDALTYLDQVKIRFG--SDPATYNGFLEIMK 33 (77)
T ss_dssp SHHHHHHHHHHHHHHTT--TCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHc--cChHHHHHHHHHHH
Confidence 35678888888888885 47899999998776
No 52
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=24.51 E-value=75 Score=25.50 Aligned_cols=30 Identities=10% Similarity=0.072 Sum_probs=19.7
Q ss_pred hHHHHHHHHHHHHHhhhhhchhHHHHHHHHHH
Q 006065 609 YPKAVELLVALRKGCILEQVYLSVSFFLLWFA 640 (662)
Q Consensus 609 y~ka~~~l~~~R~~~i~~~e~~~~N~fl~~lk 640 (662)
+..|+.-|...+..... +|+.|++||.-|+
T Consensus 7 ~~~A~~yv~kVK~rF~~--~p~~Y~~FL~il~ 36 (85)
T 1e91_A 7 FNNAISYVNKIKTRFLD--HPEIYRSFLEILH 36 (85)
T ss_dssp HHHHHHHHHHHHHHTSS--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhc--ChHHHHHHHHHHH
Confidence 55666666666666643 6777777777665
No 53
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=22.18 E-value=58 Score=25.85 Aligned_cols=32 Identities=13% Similarity=0.013 Sum_probs=25.3
Q ss_pred CchHHHHHHHHHHHHHhhhhhchhHHHHHHHHHH
Q 006065 607 INYPKAVELLVALRKGCILEQVYLSVSFFLLWFA 640 (662)
Q Consensus 607 ~~y~ka~~~l~~~R~~~i~~~e~~~~N~fl~~lk 640 (662)
.....|+.-|...++.+. ++|+.|++||.-|+
T Consensus 8 ~~~~dA~~yl~~VK~rF~--~~p~~Y~~FL~im~ 39 (80)
T 2cr7_A 8 VHVEDALTYLDQVKIRFG--SDPATYNGFLEIMK 39 (80)
T ss_dssp CCSCCSHHHHHHHHHHTS--SCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc--cChHHHHHHHHHHH
Confidence 445678888888888885 47899999998876
No 54
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=21.65 E-value=98 Score=25.03 Aligned_cols=31 Identities=10% Similarity=0.039 Sum_probs=19.0
Q ss_pred chHHHHHHHHHHHHHhhhhhchhHHHHHHHHHH
Q 006065 608 NYPKAVELLVALRKGCILEQVYLSVSFFLLWFA 640 (662)
Q Consensus 608 ~y~ka~~~l~~~R~~~i~~~e~~~~N~fl~~lk 640 (662)
.+..|+.-|...+..+.. +|+.|++||+-|+
T Consensus 9 ~~~~A~~YvnkVK~rF~~--~p~~Y~~FL~IL~ 39 (89)
T 1g1e_B 9 EFNHAINYVNKIKNRFQG--QPDIYKAFLEILH 39 (89)
T ss_dssp HHHHHHHHHHHHHHHTTT--CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcc--ChHHHHHHHHHHH
Confidence 355666666666666643 5666666666665
No 55
>2e6c_A 5'-nucleotidase SURE; SURE protein, cowith manganese ION and AMP hydrolase; 2.05A {Thermus thermophilus} PDB: 2e6b_A 2e69_A 2e6e_A 2e6g_A 2e6h_A
Probab=20.00 E-value=1.7e+02 Score=28.47 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=27.3
Q ss_pred EEEeCCCCCCCCCCCCCchhhHHHHHHHHhhCCcEEEEEeec
Q 006065 124 CLITDALCPLKDPDVGTKEDQVSTIARQMVAFGLRMKNIVVR 165 (662)
Q Consensus 124 vLiTD~~~p~~~~~~~~~~~~~~~ia~~l~~~gI~l~vi~i~ 165 (662)
||+||.|+... ..+..+++.|++.| ++.|+..+
T Consensus 3 ILlTNDDGi~a--------pGi~aL~~~l~~~g-~V~VVAP~ 35 (244)
T 2e6c_A 3 ILVTNDDGIYS--------PGLWALAEAASQFG-EVFVAAPD 35 (244)
T ss_dssp EEEECSSCTTC--------HHHHHHHHHHTTTS-EEEEEEEC
T ss_pred EEEEcCCCCCc--------HhHHHHHHHHHhCC-CEEEEecC
Confidence 79999999754 57999999999988 88777654
Done!