Query 006068
Match_columns 662
No_of_seqs 594 out of 4356
Neff 7.5
Searched_HMMs 46136
Date Thu Mar 28 17:53:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006068.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006068hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1217 TypA Predicted membran 100.0 2E-178 4E-183 1378.6 50.5 589 58-660 3-603 (603)
2 TIGR01394 TypA_BipA GTP-bindin 100.0 2E-152 5E-157 1287.2 60.9 582 60-655 1-594 (594)
3 PRK10218 GTP-binding protein; 100.0 1E-150 3E-155 1270.4 62.0 590 58-661 3-605 (607)
4 KOG0462 Elongation factor-type 100.0 2E-100 4E-105 809.9 35.5 547 55-645 55-641 (650)
5 COG0480 FusA Translation elong 100.0 9.7E-85 2.1E-89 738.4 47.1 444 57-536 7-683 (697)
6 KOG0465 Mitochondrial elongati 100.0 7.7E-84 1.7E-88 689.4 25.4 446 56-536 35-713 (721)
7 PRK00007 elongation factor G; 100.0 4.6E-78 9.9E-83 699.3 47.1 448 54-537 4-684 (693)
8 TIGR01393 lepA GTP-binding pro 100.0 1.3E-77 2.8E-82 680.4 49.0 430 59-532 2-478 (595)
9 PRK05433 GTP-binding protein L 100.0 1E-77 2.3E-82 681.7 47.2 432 57-532 4-481 (600)
10 TIGR00484 EF-G translation elo 100.0 6.8E-77 1.5E-81 690.3 48.1 449 53-537 3-681 (689)
11 PRK12739 elongation factor G; 100.0 1.1E-76 2.4E-81 688.2 45.3 447 56-538 4-682 (691)
12 PRK07560 elongation factor EF- 100.0 1.9E-75 4.1E-80 681.0 41.4 461 57-536 17-705 (731)
13 PRK13351 elongation factor G; 100.0 2.4E-74 5.3E-79 670.3 45.6 445 56-536 4-680 (687)
14 COG0481 LepA Membrane GTPase L 100.0 6.3E-72 1.4E-76 583.7 37.4 434 55-532 4-484 (603)
15 TIGR00490 aEF-2 translation el 100.0 5.7E-72 1.2E-76 650.2 39.4 461 57-536 16-703 (720)
16 PRK12740 elongation factor G; 100.0 2.1E-71 4.7E-76 644.6 42.6 435 66-536 1-662 (668)
17 PLN00116 translation elongatio 100.0 1.5E-70 3.2E-75 646.7 43.5 468 57-536 16-809 (843)
18 PTZ00416 elongation factor 2; 100.0 3.7E-69 7.9E-74 633.6 44.1 465 57-537 16-803 (836)
19 KOG0464 Elongation factor G [T 100.0 2E-64 4.4E-69 516.8 13.1 445 57-534 34-739 (753)
20 PRK00741 prfC peptide chain re 100.0 5.4E-61 1.2E-65 536.8 38.4 362 58-454 8-472 (526)
21 TIGR00503 prfC peptide chain r 100.0 1.1E-59 2.4E-64 526.4 38.1 359 58-451 9-469 (527)
22 KOG0469 Elongation factor 2 [T 100.0 1.3E-59 2.7E-64 490.8 27.9 469 57-537 16-809 (842)
23 KOG0468 U5 snRNP-specific prot 100.0 3E-49 6.5E-54 424.4 32.9 469 56-536 124-910 (971)
24 COG4108 PrfC Peptide chain rel 100.0 3.3E-49 7.3E-54 410.5 26.1 358 58-450 10-469 (528)
25 KOG0467 Translation elongation 100.0 1.3E-46 2.9E-51 411.3 26.1 465 56-533 5-829 (887)
26 COG5256 TEF1 Translation elong 100.0 5.9E-41 1.3E-45 350.1 28.8 285 58-358 5-320 (428)
27 CHL00071 tufA elongation facto 100.0 1.4E-39 3E-44 356.9 31.0 285 58-354 10-307 (409)
28 PLN00043 elongation factor 1-a 100.0 9.5E-40 2.1E-44 360.1 28.5 281 58-354 5-318 (447)
29 PTZ00141 elongation factor 1- 100.0 1.7E-39 3.8E-44 358.3 29.0 281 58-354 5-318 (446)
30 PRK12736 elongation factor Tu; 100.0 3.2E-39 7E-44 352.3 30.6 279 58-354 10-297 (394)
31 PRK12735 elongation factor Tu; 100.0 1.4E-38 3.1E-43 347.5 31.0 281 58-354 10-299 (396)
32 PLN03126 Elongation factor Tu; 100.0 1.2E-38 2.5E-43 352.8 30.6 286 58-355 79-377 (478)
33 TIGR00485 EF-Tu translation el 100.0 1.8E-38 4E-43 346.7 30.6 279 58-354 10-297 (394)
34 PRK00049 elongation factor Tu; 100.0 2.6E-38 5.7E-43 345.1 31.3 281 58-354 10-299 (396)
35 PLN03127 Elongation factor Tu; 100.0 1.1E-37 2.4E-42 343.4 32.9 286 55-354 56-350 (447)
36 PRK12317 elongation factor 1-a 100.0 3.6E-38 7.9E-43 348.1 28.5 282 58-355 4-311 (425)
37 TIGR02034 CysN sulfate adenyly 100.0 1.4E-37 3E-42 340.5 27.5 276 62-355 2-301 (406)
38 TIGR00483 EF-1_alpha translati 100.0 2.8E-37 6.1E-42 341.0 28.3 282 58-355 5-313 (426)
39 COG0050 TufB GTPases - transla 100.0 1.5E-37 3.3E-42 308.6 20.2 283 58-358 10-301 (394)
40 PRK05306 infB translation init 100.0 2E-36 4.4E-41 349.3 32.1 338 58-452 288-673 (787)
41 KOG0460 Mitochondrial translat 100.0 8.5E-38 1.8E-42 315.7 18.0 286 58-359 52-346 (449)
42 PRK05124 cysN sulfate adenylyl 100.0 2.1E-36 4.6E-41 336.2 28.6 282 58-356 25-330 (474)
43 TIGR00487 IF-2 translation ini 100.0 5.5E-35 1.2E-39 330.6 32.5 299 59-411 86-419 (587)
44 PTZ00327 eukaryotic translatio 100.0 2.1E-35 4.7E-40 324.6 27.2 263 58-355 32-352 (460)
45 PRK10512 selenocysteinyl-tRNA- 100.0 2.4E-34 5.2E-39 327.7 28.5 252 62-354 2-260 (614)
46 PRK05506 bifunctional sulfate 100.0 2.2E-34 4.8E-39 332.0 28.2 278 60-355 24-325 (632)
47 PRK04000 translation initiatio 100.0 7.3E-34 1.6E-38 311.2 27.7 266 58-356 7-320 (411)
48 TIGR03680 eif2g_arch translati 100.0 1.7E-33 3.7E-38 308.5 27.4 264 59-355 3-314 (406)
49 CHL00189 infB translation init 100.0 4.1E-33 8.8E-38 319.2 26.3 249 58-352 242-500 (742)
50 TIGR00475 selB selenocysteine- 100.0 7.5E-33 1.6E-37 314.6 28.4 253 62-353 2-260 (581)
51 COG2895 CysN GTPases - Sulfate 100.0 5E-33 1.1E-37 283.2 23.2 298 59-380 5-327 (431)
52 KOG0458 Elongation factor 1 al 100.0 1.1E-32 2.4E-37 297.2 25.7 285 54-352 171-488 (603)
53 COG3276 SelB Selenocysteine-sp 100.0 1.8E-31 4E-36 281.0 21.8 250 62-354 2-256 (447)
54 PF00009 GTP_EFTU: Elongation 100.0 2.5E-31 5.3E-36 261.6 17.6 178 59-254 2-188 (188)
55 cd01885 EF2 EF2 (for archaea a 100.0 4.5E-31 9.7E-36 265.4 18.9 189 61-255 1-222 (222)
56 KOG1145 Mitochondrial translat 100.0 8.4E-31 1.8E-35 279.2 20.1 248 58-351 151-405 (683)
57 cd01884 EF_Tu EF-Tu subfamily. 100.0 8E-30 1.7E-34 252.0 19.9 189 60-255 2-195 (195)
58 cd01886 EF-G Elongation factor 100.0 2.2E-29 4.9E-34 260.7 19.6 129 62-190 1-135 (270)
59 cd04168 TetM_like Tet(M)-like 100.0 4.5E-29 9.7E-34 254.1 18.8 177 62-255 1-237 (237)
60 COG0532 InfB Translation initi 100.0 1E-28 2.2E-33 266.7 22.1 250 59-353 4-261 (509)
61 PRK04004 translation initiatio 100.0 3.3E-28 7.3E-33 276.1 27.3 264 59-353 5-328 (586)
62 cd04169 RF3 RF3 subfamily. Pe 100.0 9.6E-29 2.1E-33 255.7 20.7 132 59-190 1-142 (267)
63 COG5257 GCD11 Translation init 100.0 1.5E-27 3.3E-32 240.3 24.6 260 59-351 9-311 (415)
64 KOG0461 Selenocysteine-specifi 100.0 2.3E-28 5E-33 247.4 18.5 249 61-338 8-267 (522)
65 COG5258 GTPBP1 GTPase [General 100.0 2.5E-27 5.4E-32 243.2 23.0 277 57-357 114-440 (527)
66 KOG0459 Polypeptide release fa 100.0 2.7E-28 5.8E-33 252.0 14.7 285 57-357 76-393 (501)
67 cd01891 TypA_BipA TypA (tyrosi 100.0 2.7E-27 5.9E-32 233.9 21.0 190 59-255 1-194 (194)
68 TIGR00491 aIF-2 translation in 100.0 9.8E-27 2.1E-31 263.1 27.1 261 60-351 4-324 (590)
69 cd04166 CysN_ATPS CysN_ATPS su 100.0 3.7E-27 8.1E-32 235.7 18.9 186 62-255 1-207 (208)
70 cd01883 EF1_alpha Eukaryotic e 99.9 4.7E-27 1E-31 236.9 18.0 187 62-252 1-216 (219)
71 cd04167 Snu114p Snu114p subfam 99.9 9E-26 2E-30 226.5 17.5 189 61-255 1-213 (213)
72 cd01888 eIF2_gamma eIF2-gamma 99.9 4.7E-25 1E-29 219.7 17.4 167 61-256 1-202 (203)
73 cd04170 EF-G_bact Elongation f 99.9 5.7E-25 1.2E-29 228.5 18.6 128 62-189 1-134 (268)
74 cd01890 LepA LepA subfamily. 99.9 1.7E-24 3.7E-29 210.2 19.9 171 61-255 1-179 (179)
75 PRK14845 translation initiatio 99.9 9.4E-24 2E-28 249.0 25.4 261 61-353 463-783 (1049)
76 cd01889 SelB_euk SelB subfamil 99.9 4.4E-24 9.6E-29 210.6 17.5 170 62-256 2-189 (192)
77 cd04165 GTPBP1_like GTPBP1-lik 99.9 4.2E-23 9.2E-28 208.4 17.6 177 62-255 1-224 (224)
78 cd00881 GTP_translation_factor 99.9 5.6E-22 1.2E-26 193.4 19.6 178 62-255 1-189 (189)
79 cd04171 SelB SelB subfamily. 99.9 1.3E-21 2.8E-26 186.4 18.4 160 62-250 2-163 (164)
80 COG1160 Predicted GTPases [Gen 99.9 6.5E-21 1.4E-25 203.4 20.8 217 61-331 4-235 (444)
81 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 2.9E-20 6.3E-25 178.1 17.8 161 62-252 2-165 (168)
82 cd04160 Arfrp1 Arfrp1 subfamil 99.8 2.9E-19 6.3E-24 171.2 15.4 161 62-250 1-166 (167)
83 cd01894 EngA1 EngA1 subfamily. 99.8 3.7E-19 8.1E-24 167.9 15.8 149 64-252 1-157 (157)
84 TIGR03594 GTPase_EngA ribosome 99.8 5.4E-19 1.2E-23 195.9 18.6 162 59-252 171-343 (429)
85 KOG0466 Translation initiation 99.8 1.1E-19 2.4E-24 182.0 11.2 247 59-338 37-336 (466)
86 cd01895 EngA2 EngA2 subfamily. 99.8 1.6E-18 3.4E-23 166.0 18.4 161 60-251 2-173 (174)
87 KOG1144 Translation initiation 99.8 1.8E-19 3.9E-24 197.5 13.2 218 59-302 474-739 (1064)
88 PRK00093 GTP-binding protein D 99.8 1.4E-18 2.9E-23 193.1 19.7 160 59-251 172-342 (435)
89 COG1160 Predicted GTPases [Gen 99.8 1.2E-18 2.6E-23 186.2 17.8 162 59-251 177-349 (444)
90 PF02421 FeoB_N: Ferrous iron 99.8 3.9E-19 8.5E-24 168.1 12.3 147 62-248 2-156 (156)
91 cd01864 Rab19 Rab19 subfamily. 99.8 2.2E-18 4.8E-23 165.1 16.8 158 59-252 2-165 (165)
92 TIGR00436 era GTP-binding prot 99.8 3.4E-18 7.3E-23 177.9 18.3 157 62-255 2-166 (270)
93 TIGR03594 GTPase_EngA ribosome 99.8 3.3E-18 7.2E-23 189.6 18.3 154 62-255 1-162 (429)
94 PRK15494 era GTPase Era; Provi 99.8 2.9E-18 6.3E-23 183.7 16.3 159 59-254 51-217 (339)
95 COG1159 Era GTPase [General fu 99.8 4.3E-18 9.4E-23 173.0 16.2 160 60-255 6-174 (298)
96 cd04124 RabL2 RabL2 subfamily. 99.8 5E-18 1.1E-22 162.5 15.7 154 62-253 2-158 (161)
97 KOG0463 GTP-binding protein GP 99.8 1.9E-18 4.2E-23 177.1 13.5 270 61-354 134-456 (641)
98 cd04145 M_R_Ras_like M-Ras/R-R 99.8 1E-17 2.2E-22 159.7 17.2 156 61-252 3-163 (164)
99 PRK03003 GTP-binding protein D 99.8 9.6E-18 2.1E-22 187.7 19.6 156 59-254 37-200 (472)
100 cd01898 Obg Obg subfamily. Th 99.8 9.7E-18 2.1E-22 161.0 16.6 154 62-252 2-170 (170)
101 PRK03003 GTP-binding protein D 99.8 8.3E-18 1.8E-22 188.3 17.3 162 59-253 210-382 (472)
102 cd04154 Arl2 Arl2 subfamily. 99.8 1.7E-17 3.8E-22 160.5 16.1 155 59-250 13-172 (173)
103 cd01879 FeoB Ferrous iron tran 99.8 8.1E-18 1.7E-22 159.3 13.5 148 65-252 1-156 (158)
104 cd01897 NOG NOG1 is a nucleola 99.8 2.3E-17 5E-22 158.2 16.7 153 61-252 1-167 (168)
105 smart00173 RAS Ras subfamily o 99.8 2.4E-17 5.3E-22 157.4 16.5 156 62-253 2-162 (164)
106 cd04157 Arl6 Arl6 subfamily. 99.8 1.7E-17 3.8E-22 157.8 15.3 153 62-250 1-161 (162)
107 cd01860 Rab5_related Rab5-rela 99.7 2.2E-17 4.7E-22 157.5 15.7 158 61-253 2-163 (163)
108 KOG1143 Predicted translation 99.7 2E-17 4.4E-22 169.7 16.3 270 61-354 168-491 (591)
109 cd04106 Rab23_lke Rab23-like s 99.7 2.7E-17 5.8E-22 156.6 16.1 153 62-251 2-161 (162)
110 cd04113 Rab4 Rab4 subfamily. 99.7 1.8E-17 3.9E-22 158.0 14.9 155 62-251 2-160 (161)
111 smart00175 RAB Rab subfamily o 99.7 3.3E-17 7.1E-22 156.1 15.8 155 62-253 2-162 (164)
112 cd01867 Rab8_Rab10_Rab13_like 99.7 3.8E-17 8.2E-22 157.1 16.3 156 60-252 3-164 (167)
113 PRK00093 GTP-binding protein D 99.7 3E-17 6.6E-22 182.3 17.9 154 61-254 2-163 (435)
114 cd01861 Rab6 Rab6 subfamily. 99.7 5.2E-17 1.1E-21 154.5 17.0 155 61-252 1-161 (161)
115 cd04151 Arl1 Arl1 subfamily. 99.7 3.6E-17 7.9E-22 155.7 15.5 152 62-250 1-157 (158)
116 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.7 6.4E-17 1.4E-21 153.5 16.7 164 59-257 21-189 (221)
117 cd04138 H_N_K_Ras_like H-Ras/N 99.7 6.4E-17 1.4E-21 153.4 17.0 155 61-252 2-161 (162)
118 cd04119 RJL RJL (RabJ-Like) su 99.7 5E-17 1.1E-21 155.1 16.0 156 62-252 2-166 (168)
119 cd01865 Rab3 Rab3 subfamily. 99.7 4.3E-17 9.3E-22 156.4 15.5 158 61-253 2-163 (165)
120 cd04136 Rap_like Rap-like subf 99.7 6.7E-17 1.4E-21 153.9 16.4 156 61-252 2-162 (163)
121 TIGR03598 GTPase_YsxC ribosome 99.7 7.4E-17 1.6E-21 157.3 16.9 151 55-225 13-176 (179)
122 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 5.5E-17 1.2E-21 155.5 15.7 156 60-252 2-163 (166)
123 PRK09518 bifunctional cytidyla 99.7 6E-17 1.3E-21 189.6 19.3 157 58-254 273-437 (712)
124 cd04122 Rab14 Rab14 subfamily. 99.7 4.9E-17 1.1E-21 156.1 15.3 158 60-252 2-163 (166)
125 cd04164 trmE TrmE (MnmE, ThdF, 99.7 5.6E-17 1.2E-21 152.8 15.4 146 62-252 3-156 (157)
126 cd04114 Rab30 Rab30 subfamily. 99.7 5.7E-17 1.2E-21 155.7 15.7 157 59-252 6-168 (169)
127 PTZ00369 Ras-like protein; Pro 99.7 7.3E-17 1.6E-21 158.8 16.4 158 60-253 5-167 (189)
128 cd04140 ARHI_like ARHI subfami 99.7 9.5E-17 2.1E-21 154.0 16.8 155 61-251 2-163 (165)
129 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 6.7E-17 1.5E-21 160.6 16.0 158 62-253 2-168 (201)
130 cd01866 Rab2 Rab2 subfamily. 99.7 9.2E-17 2E-21 154.7 16.2 158 60-252 4-165 (168)
131 cd04175 Rap1 Rap1 subgroup. T 99.7 1.1E-16 2.5E-21 153.0 16.6 156 61-252 2-162 (164)
132 PRK00089 era GTPase Era; Revie 99.7 1.3E-16 2.8E-21 168.0 18.5 160 60-254 5-172 (292)
133 cd01868 Rab11_like Rab11-like. 99.7 1.1E-16 2.4E-21 153.1 16.4 156 60-252 3-164 (165)
134 cd00878 Arf_Arl Arf (ADP-ribos 99.7 6.1E-17 1.3E-21 153.8 14.5 152 62-250 1-157 (158)
135 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 7.8E-17 1.7E-21 157.8 15.5 161 61-253 4-170 (183)
136 cd00879 Sar1 Sar1 subfamily. 99.7 7.2E-17 1.6E-21 158.4 15.0 158 60-252 19-190 (190)
137 cd04120 Rab12 Rab12 subfamily. 99.7 1.1E-16 2.4E-21 159.2 16.4 155 62-252 2-162 (202)
138 PRK09518 bifunctional cytidyla 99.7 6.3E-17 1.4E-21 189.5 17.0 163 59-254 449-622 (712)
139 PRK04213 GTP-binding protein; 99.7 1.6E-16 3.5E-21 157.6 17.3 160 59-256 8-195 (201)
140 PRK00454 engB GTP-binding prot 99.7 2.3E-16 4.9E-21 155.5 18.2 167 51-253 15-194 (196)
141 cd04158 ARD1 ARD1 subfamily. 99.7 1.3E-16 2.8E-21 154.0 15.9 157 62-254 1-162 (169)
142 cd01863 Rab18 Rab18 subfamily. 99.7 1E-16 2.2E-21 152.6 14.8 154 62-251 2-160 (161)
143 cd04116 Rab9 Rab9 subfamily. 99.7 1.6E-16 3.5E-21 152.9 16.3 157 60-251 5-169 (170)
144 cd00877 Ran Ran (Ras-related n 99.7 9.5E-17 2.1E-21 154.6 14.7 156 61-253 1-159 (166)
145 cd01862 Rab7 Rab7 subfamily. 99.7 1.1E-16 2.3E-21 153.9 15.0 155 62-252 2-166 (172)
146 cd04115 Rab33B_Rab33A Rab33B/R 99.7 1.6E-16 3.5E-21 153.3 16.2 159 60-252 2-168 (170)
147 cd01893 Miro1 Miro1 subfamily. 99.7 1.9E-16 4.1E-21 152.2 16.6 158 62-252 2-163 (166)
148 PLN03118 Rab family protein; P 99.7 1.9E-16 4.2E-21 158.6 17.2 158 60-253 14-177 (211)
149 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 1.9E-16 4.1E-21 153.6 16.5 153 60-250 15-173 (174)
150 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.7 1.2E-16 2.7E-21 154.8 15.0 157 61-253 3-164 (172)
151 cd04139 RalA_RalB RalA/RalB su 99.7 1.3E-16 2.7E-21 151.9 14.9 156 61-252 1-161 (164)
152 cd04127 Rab27A Rab27a subfamil 99.7 1.6E-16 3.4E-21 154.4 15.8 159 59-252 3-176 (180)
153 cd03690 Tet_II Tet_II: This su 99.7 3.7E-17 8.1E-22 139.6 9.9 85 260-352 1-85 (85)
154 cd04144 Ras2 Ras2 subfamily. 99.7 1.6E-16 3.4E-21 156.5 15.7 156 62-253 1-163 (190)
155 TIGR00231 small_GTP small GTP- 99.7 6.7E-17 1.5E-21 151.1 12.5 149 61-248 2-159 (161)
156 cd04149 Arf6 Arf6 subfamily. 99.7 2.3E-16 5.1E-21 152.3 16.4 154 60-250 9-167 (168)
157 cd04176 Rap2 Rap2 subgroup. T 99.7 2.7E-16 5.9E-21 150.1 16.7 156 61-252 2-162 (163)
158 cd04161 Arl2l1_Arl13_like Arl2 99.7 1.7E-16 3.8E-21 152.9 15.4 161 62-250 1-166 (167)
159 PRK15467 ethanolamine utilizat 99.7 7.1E-17 1.5E-21 154.4 12.4 143 61-254 2-148 (158)
160 cd04163 Era Era subfamily. Er 99.7 3.7E-16 8E-21 148.0 17.3 158 60-252 3-168 (168)
161 cd04150 Arf1_5_like Arf1-Arf5- 99.7 3.1E-16 6.8E-21 149.9 16.7 152 62-250 2-158 (159)
162 KOG0084 GTPase Rab1/YPT1, smal 99.7 1.2E-16 2.6E-21 152.3 13.6 161 57-252 6-171 (205)
163 COG2229 Predicted GTPase [Gene 99.7 3.1E-16 6.8E-21 148.3 16.2 169 60-255 10-181 (187)
164 cd04134 Rho3 Rho3 subfamily. 99.7 1.7E-16 3.7E-21 156.2 15.1 165 61-256 1-177 (189)
165 cd04110 Rab35 Rab35 subfamily. 99.7 2.7E-16 5.9E-21 156.1 16.4 158 59-253 5-167 (199)
166 cd04121 Rab40 Rab40 subfamily. 99.7 3.7E-16 8E-21 153.9 16.9 157 59-252 5-166 (189)
167 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.9E-16 4.2E-21 153.2 14.7 159 62-253 2-165 (170)
168 cd04177 RSR1 RSR1 subgroup. R 99.7 3.6E-16 7.8E-21 150.5 16.1 158 61-253 2-164 (168)
169 PLN03071 GTP-binding nuclear p 99.7 3.6E-16 7.9E-21 157.6 16.6 159 58-253 11-172 (219)
170 cd00154 Rab Rab family. Rab G 99.7 4.2E-16 9.1E-21 146.4 16.0 153 62-249 2-158 (159)
171 PRK09554 feoB ferrous iron tra 99.7 2E-16 4.3E-21 184.8 16.6 153 61-253 4-168 (772)
172 cd04123 Rab21 Rab21 subfamily. 99.7 4.2E-16 9E-21 147.8 15.9 154 62-252 2-161 (162)
173 cd04135 Tc10 TC10 subfamily. 99.7 2E-16 4.4E-21 152.6 13.8 159 62-252 2-173 (174)
174 cd04142 RRP22 RRP22 subfamily. 99.7 3.5E-16 7.6E-21 155.3 15.8 157 62-254 2-175 (198)
175 smart00177 ARF ARF-like small 99.7 5.8E-16 1.3E-20 150.5 17.0 155 60-252 13-173 (175)
176 cd04156 ARLTS1 ARLTS1 subfamil 99.7 4.2E-16 9.2E-21 148.2 15.7 153 62-250 1-159 (160)
177 cd04146 RERG_RasL11_like RERG/ 99.7 2.3E-16 5E-21 151.1 13.8 156 62-252 1-163 (165)
178 smart00838 EFG_C Elongation fa 99.7 1.9E-17 4.1E-22 141.5 5.4 77 457-536 1-83 (85)
179 cd04112 Rab26 Rab26 subfamily. 99.7 3.6E-16 7.7E-21 154.1 15.3 159 62-255 2-165 (191)
180 PRK05291 trmE tRNA modificatio 99.7 1.9E-16 4.2E-21 175.7 15.0 149 60-254 215-371 (449)
181 PLN00223 ADP-ribosylation fact 99.7 5.7E-16 1.2E-20 151.5 16.6 155 60-252 17-177 (181)
182 PLN03110 Rab GTPase; Provision 99.7 5E-16 1.1E-20 156.3 16.6 162 58-254 10-175 (216)
183 cd04147 Ras_dva Ras-dva subfam 99.7 3.8E-16 8.2E-21 154.9 15.5 156 62-254 1-164 (198)
184 cd04128 Spg1 Spg1p. Spg1p (se 99.7 5.6E-16 1.2E-20 151.7 16.4 160 62-253 2-166 (182)
185 smart00178 SAR Sar1p-like memb 99.7 6.6E-16 1.4E-20 151.4 16.7 160 59-251 16-183 (184)
186 cd01878 HflX HflX subfamily. 99.7 5.7E-16 1.2E-20 154.1 16.3 152 59-252 40-204 (204)
187 cd04159 Arl10_like Arl10-like 99.7 5.6E-16 1.2E-20 145.8 15.4 151 63-250 2-158 (159)
188 cd04118 Rab24 Rab24 subfamily. 99.7 4.3E-16 9.4E-21 153.4 15.1 161 62-252 2-165 (193)
189 cd01871 Rac1_like Rac1-like su 99.7 3.6E-16 7.8E-21 151.9 14.1 160 61-251 2-173 (174)
190 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 6.4E-16 1.4E-20 148.6 15.5 159 63-250 2-163 (164)
191 cd01875 RhoG RhoG subfamily. 99.7 1E-15 2.2E-20 151.0 17.3 164 61-256 4-180 (191)
192 PLN03108 Rab family protein; P 99.7 8.3E-16 1.8E-20 154.0 16.9 159 59-252 5-167 (210)
193 cd04133 Rop_like Rop subfamily 99.7 3.2E-16 6.9E-21 152.6 13.5 163 61-254 2-174 (176)
194 cd04097 mtEFG1_C mtEFG1_C: C-t 99.7 4.1E-17 8.9E-22 137.1 6.2 72 459-533 1-78 (78)
195 PRK12299 obgE GTPase CgtA; Rev 99.7 7.5E-16 1.6E-20 164.3 17.3 160 58-254 156-329 (335)
196 KOG0078 GTP-binding protein SE 99.7 9.8E-16 2.1E-20 148.2 16.2 163 56-253 8-174 (207)
197 cd04132 Rho4_like Rho4-like su 99.7 5.1E-16 1.1E-20 152.0 14.4 159 62-253 2-167 (187)
198 cd00880 Era_like Era (E. coli 99.7 1.3E-15 2.8E-20 142.5 16.5 155 65-252 1-163 (163)
199 cd04109 Rab28 Rab28 subfamily. 99.7 8.7E-16 1.9E-20 154.4 16.4 155 62-253 2-166 (215)
200 cd00876 Ras Ras family. The R 99.7 1E-15 2.2E-20 144.8 15.8 153 62-252 1-160 (160)
201 cd04137 RheB Rheb (Ras Homolog 99.7 7.7E-16 1.7E-20 149.7 15.3 154 61-252 2-162 (180)
202 cd01874 Cdc42 Cdc42 subfamily. 99.7 6.8E-16 1.5E-20 150.1 14.7 157 61-251 2-173 (175)
203 cd04155 Arl3 Arl3 subfamily. 99.7 7E-16 1.5E-20 148.8 14.7 153 60-250 14-172 (173)
204 PTZ00133 ADP-ribosylation fact 99.7 1.4E-15 3E-20 148.9 16.6 155 60-252 17-177 (182)
205 KOG0092 GTPase Rab5/YPT51 and 99.7 5.1E-16 1.1E-20 147.5 12.9 163 60-257 5-171 (200)
206 cd03709 lepA_C lepA_C: This fa 99.7 5.5E-17 1.2E-21 136.9 5.6 71 459-532 1-79 (80)
207 cd04143 Rhes_like Rhes_like su 99.7 1.2E-15 2.6E-20 156.5 16.5 160 62-256 2-174 (247)
208 smart00176 RAN Ran (Ras-relate 99.7 5.9E-16 1.3E-20 153.8 13.6 151 66-253 1-154 (200)
209 cd04092 mtEFG2_II_like mtEFG2_ 99.7 2.9E-16 6.3E-21 133.6 9.8 83 263-352 1-83 (83)
210 TIGR02729 Obg_CgtA Obg family 99.7 1.2E-15 2.6E-20 162.6 16.8 157 58-252 155-328 (329)
211 cd04126 Rab20 Rab20 subfamily. 99.7 1.4E-15 3.1E-20 153.1 16.4 162 62-252 2-189 (220)
212 smart00174 RHO Rho (Ras homolo 99.7 1.1E-15 2.3E-20 147.7 14.9 158 63-252 1-171 (174)
213 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.7 1.6E-15 3.5E-20 148.5 16.3 161 59-251 4-178 (182)
214 cd03711 Tet_C Tet_C: C-terminu 99.7 8.4E-17 1.8E-21 135.2 6.0 72 459-533 1-78 (78)
215 TIGR02528 EutP ethanolamine ut 99.7 4.7E-16 1E-20 145.2 11.5 136 62-249 2-141 (142)
216 cd04101 RabL4 RabL4 (Rab-like4 99.7 1.7E-15 3.6E-20 144.7 15.6 156 62-252 2-163 (164)
217 cd04098 eEF2_C_snRNP eEF2_C_sn 99.7 8.3E-17 1.8E-21 135.7 5.7 72 459-533 1-80 (80)
218 cd00157 Rho Rho (Ras homology) 99.7 1.4E-15 3E-20 146.0 15.0 158 62-250 2-170 (171)
219 PF00679 EFG_C: Elongation fac 99.7 4.8E-17 1.1E-21 140.2 4.3 79 456-537 1-86 (89)
220 cd04125 RabA_like RabA-like su 99.7 1.6E-15 3.6E-20 148.8 15.6 157 62-253 2-162 (188)
221 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.3E-15 2.8E-20 168.3 16.6 150 59-252 202-359 (442)
222 cd01870 RhoA_like RhoA-like su 99.7 1.7E-15 3.8E-20 146.3 15.5 160 61-252 2-174 (175)
223 cd01881 Obg_like The Obg-like 99.7 1.3E-15 2.8E-20 146.8 14.4 150 65-251 1-175 (176)
224 cd04131 Rnd Rnd subfamily. Th 99.7 2E-15 4.3E-20 147.3 15.4 158 62-251 3-174 (178)
225 PRK12298 obgE GTPase CgtA; Rev 99.7 1.9E-15 4.2E-20 164.2 16.8 160 59-254 158-334 (390)
226 COG0218 Predicted GTPase [Gene 99.6 3.5E-15 7.5E-20 144.3 16.2 169 52-253 16-197 (200)
227 cd03710 BipA_TypA_C BipA_TypA_ 99.6 1.9E-16 4.1E-21 133.3 6.5 71 459-532 1-78 (79)
228 cd04117 Rab15 Rab15 subfamily. 99.6 4E-15 8.6E-20 142.4 16.3 153 62-251 2-160 (161)
229 TIGR03156 GTP_HflX GTP-binding 99.6 1.9E-15 4.1E-20 162.5 15.1 150 59-252 188-351 (351)
230 cd04130 Wrch_1 Wrch-1 subfamil 99.6 1.5E-15 3.3E-20 146.9 12.8 156 62-249 2-170 (173)
231 cd01892 Miro2 Miro2 subfamily. 99.6 2.3E-15 5.1E-20 145.4 14.0 161 59-253 3-166 (169)
232 KOG0394 Ras-related GTPase [Ge 99.6 1E-15 2.2E-20 143.9 11.0 164 58-253 7-178 (210)
233 cd04096 eEF2_snRNP_like_C eEF2 99.6 2.1E-16 4.6E-21 133.4 5.8 72 459-533 1-80 (80)
234 cd03689 RF3_II RF3_II: this su 99.6 1.1E-15 2.3E-20 130.5 9.9 81 265-352 1-84 (85)
235 PRK12296 obgE GTPase CgtA; Rev 99.6 2.2E-15 4.7E-20 166.7 15.1 158 58-253 157-340 (500)
236 cd04088 EFG_mtEFG_II EFG_mtEFG 99.6 1.4E-15 3.1E-20 129.3 9.9 83 263-352 1-83 (83)
237 cd03713 EFG_mtEFG_C EFG_mtEFG_ 99.6 2.6E-16 5.7E-21 132.2 5.2 72 459-533 1-78 (78)
238 cd04111 Rab39 Rab39 subfamily. 99.6 6.2E-15 1.3E-19 147.8 16.1 156 61-253 3-166 (211)
239 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 6.8E-15 1.5E-19 149.2 16.3 163 60-252 13-187 (232)
240 PRK12297 obgE GTPase CgtA; Rev 99.6 4.5E-15 9.7E-20 162.3 15.3 154 59-253 157-327 (424)
241 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 1.1E-14 2.3E-19 147.0 16.5 160 61-251 2-174 (222)
242 cd01876 YihA_EngB The YihA (En 99.6 2.2E-14 4.7E-19 136.3 17.6 156 63-252 2-170 (170)
243 COG0486 ThdF Predicted GTPase 99.6 4.7E-15 1E-19 159.2 14.1 154 60-255 217-378 (454)
244 KOG0080 GTPase Rab18, small G 99.6 6.8E-15 1.5E-19 135.1 12.8 159 59-252 10-173 (209)
245 PF00025 Arf: ADP-ribosylation 99.6 7.5E-15 1.6E-19 142.8 14.0 158 58-251 12-174 (175)
246 PRK11058 GTPase HflX; Provisio 99.6 8.3E-15 1.8E-19 161.1 15.6 152 60-254 197-363 (426)
247 cd03691 BipA_TypA_II BipA_TypA 99.6 5.3E-15 1.2E-19 126.6 10.6 86 263-352 1-86 (86)
248 TIGR00437 feoB ferrous iron tr 99.6 6.2E-15 1.3E-19 168.5 14.1 146 67-252 1-154 (591)
249 cd04091 mtEFG1_II_like mtEFG1_ 99.6 4.6E-15 1E-19 125.5 9.7 81 263-352 1-81 (81)
250 cd04148 RGK RGK subfamily. Th 99.6 1.6E-14 3.4E-19 146.0 15.4 155 62-253 2-163 (221)
251 cd01514 Elongation_Factor_C El 99.6 1.5E-15 3.2E-20 127.9 5.8 72 459-533 1-79 (79)
252 KOG0098 GTPase Rab2, small G p 99.6 2.2E-14 4.8E-19 135.3 13.7 159 59-252 5-167 (216)
253 PTZ00132 GTP-binding nuclear p 99.6 4.3E-14 9.3E-19 142.0 16.7 158 59-253 8-168 (215)
254 cd00882 Ras_like_GTPase Ras-li 99.6 1.8E-14 3.8E-19 133.0 12.8 148 65-249 1-156 (157)
255 cd04103 Centaurin_gamma Centau 99.6 3.4E-14 7.5E-19 135.8 14.6 149 62-251 2-157 (158)
256 KOG1423 Ras-like GTPase ERA [C 99.6 1.6E-14 3.5E-19 145.9 12.7 175 54-254 66-272 (379)
257 cd01882 BMS1 Bms1. Bms1 is an 99.6 2.7E-13 5.9E-18 137.3 21.5 143 58-225 37-182 (225)
258 cd03699 lepA_II lepA_II: This 99.6 1.2E-14 2.5E-19 124.5 9.5 82 263-352 1-86 (86)
259 KOG0093 GTPase Rab3, small G p 99.6 3.5E-14 7.6E-19 128.6 12.5 159 59-252 20-182 (193)
260 PF00071 Ras: Ras family; Int 99.6 4.2E-14 9.1E-19 134.7 13.7 156 62-252 1-160 (162)
261 cd04129 Rho2 Rho2 subfamily. 99.6 3.5E-14 7.5E-19 139.5 13.3 159 61-253 2-173 (187)
262 PF14492 EFG_II: Elongation Fa 99.6 7.4E-15 1.6E-19 122.2 7.0 73 364-445 1-75 (75)
263 cd01896 DRG The developmentall 99.5 1.2E-13 2.6E-18 140.5 16.5 82 62-155 2-90 (233)
264 KOG0095 GTPase Rab30, small G 99.5 4.9E-14 1.1E-18 127.8 11.7 159 59-252 6-168 (213)
265 cd04105 SR_beta Signal recogni 99.5 2.5E-13 5.4E-18 135.4 17.0 115 61-188 1-126 (203)
266 KOG0087 GTPase Rab11/YPT3, sma 99.5 6.4E-14 1.4E-18 135.1 11.7 162 56-252 10-175 (222)
267 COG0370 FeoB Fe2+ transport sy 99.5 1.3E-13 2.9E-18 153.9 16.0 155 61-255 4-166 (653)
268 KOG0079 GTP-binding protein H- 99.5 8.1E-14 1.8E-18 126.3 10.1 159 59-252 7-168 (198)
269 PF01926 MMR_HSR1: 50S ribosom 99.5 1.5E-13 3.2E-18 124.1 12.0 107 62-180 1-116 (116)
270 KOG0073 GTP-binding ADP-ribosy 99.5 3.2E-13 6.9E-18 124.9 14.2 157 59-252 15-177 (185)
271 PF10662 PduV-EutP: Ethanolami 99.5 7.4E-14 1.6E-18 129.5 9.9 137 61-249 2-142 (143)
272 cd01873 RhoBTB RhoBTB subfamil 99.5 3.3E-13 7.1E-18 133.6 15.3 164 61-251 3-194 (195)
273 cd04104 p47_IIGP_like p47 (47- 99.5 3.3E-13 7.1E-18 133.9 14.8 167 61-256 2-187 (197)
274 KOG0086 GTPase Rab4, small G p 99.5 4.9E-13 1.1E-17 121.8 12.5 147 58-225 7-157 (214)
275 cd04102 RabL3 RabL3 (Rab-like3 99.5 1.6E-12 3.5E-17 129.3 16.8 114 62-185 2-143 (202)
276 KOG1489 Predicted GTP-binding 99.5 4.6E-13 1E-17 136.3 12.8 155 58-251 194-365 (366)
277 PLN00023 GTP-binding protein; 99.4 2.3E-12 5E-17 134.9 16.2 139 59-207 20-189 (334)
278 cd03700 eEF2_snRNP_like_II EF2 99.4 8.4E-13 1.8E-17 114.7 10.2 89 263-351 1-92 (93)
279 cd04090 eEF2_II_snRNP Loc2 eEF 99.4 1.3E-12 2.9E-17 113.8 11.1 88 263-350 1-91 (94)
280 PRK09866 hypothetical protein; 99.4 4.7E-12 1E-16 140.9 17.8 116 118-251 229-351 (741)
281 cd01852 AIG1 AIG1 (avrRpt2-ind 99.4 4.5E-12 9.8E-17 125.5 15.5 167 61-254 1-185 (196)
282 COG1084 Predicted GTPase [Gene 99.4 4.6E-12 1E-16 130.3 15.3 142 59-225 167-322 (346)
283 cd01850 CDC_Septin CDC/Septin. 99.4 2.9E-11 6.4E-16 126.0 21.0 142 60-206 4-176 (276)
284 KOG0075 GTP-binding ADP-ribosy 99.4 1.6E-12 3.5E-17 118.0 9.6 155 62-253 22-182 (186)
285 COG3596 Predicted GTPase [Gene 99.4 4.8E-12 1E-16 127.4 13.7 165 57-255 36-224 (296)
286 COG1163 DRG Predicted GTPase [ 99.4 5.6E-12 1.2E-16 129.1 13.5 85 60-156 63-154 (365)
287 COG1100 GTPase SAR1 and relate 99.4 9.9E-12 2.1E-16 124.7 14.9 166 61-253 6-185 (219)
288 KOG0395 Ras-related GTPase [Ge 99.4 5.6E-12 1.2E-16 124.7 12.7 159 60-254 3-166 (196)
289 PF08477 Miro: Miro-like prote 99.4 1.8E-12 3.8E-17 117.2 7.9 113 62-182 1-119 (119)
290 KOG0097 GTPase Rab14, small G 99.3 1.7E-11 3.6E-16 110.4 12.1 149 56-225 7-159 (215)
291 KOG0088 GTPase Rab21, small G 99.3 2.1E-12 4.6E-17 118.4 6.4 158 60-252 13-174 (218)
292 KOG0083 GTPase Rab26/Rab37, sm 99.3 6E-13 1.3E-17 118.6 2.7 153 65-252 2-159 (192)
293 KOG1191 Mitochondrial GTPase [ 99.3 5.8E-12 1.3E-16 135.1 9.8 161 59-252 267-449 (531)
294 COG2262 HflX GTPases [General 99.3 2.3E-11 4.9E-16 128.9 13.4 154 58-254 190-357 (411)
295 PRK13768 GTPase; Provisional 99.3 2.3E-11 4.9E-16 125.4 13.2 119 118-255 96-249 (253)
296 PF09439 SRPRB: Signal recogni 99.3 2E-11 4.3E-16 118.3 10.6 112 60-188 3-129 (181)
297 PTZ00099 rab6; Provisional 99.3 3E-11 6.5E-16 117.7 12.0 119 113-256 23-145 (176)
298 PRK09435 membrane ATPase/prote 99.3 6.2E-11 1.3E-15 125.8 14.6 170 59-253 55-260 (332)
299 KOG0081 GTPase Rab27, small G 99.3 7.8E-12 1.7E-16 114.8 6.4 162 60-252 9-184 (219)
300 KOG0070 GTP-binding ADP-ribosy 99.2 3.5E-11 7.6E-16 114.4 10.6 158 59-253 16-178 (181)
301 KOG0091 GTPase Rab39, small G 99.2 4.8E-11 1E-15 110.3 10.2 158 60-252 8-172 (213)
302 cd01899 Ygr210 Ygr210 subfamil 99.2 1.8E-10 4E-15 122.0 16.2 80 63-154 1-111 (318)
303 KOG0076 GTP-binding ADP-ribosy 99.2 6E-11 1.3E-15 111.1 10.3 169 59-255 16-189 (197)
304 cd01853 Toc34_like Toc34-like 99.2 5.6E-10 1.2E-14 114.5 18.3 153 59-222 30-208 (249)
305 COG0536 Obg Predicted GTPase [ 99.2 1E-10 2.2E-15 121.0 12.6 160 59-254 158-334 (369)
306 PRK09602 translation-associate 99.1 9.4E-10 2E-14 120.1 15.7 81 61-153 2-113 (396)
307 KOG0090 Signal recognition par 99.1 8.2E-10 1.8E-14 107.1 12.9 115 60-189 38-163 (238)
308 PF04670 Gtr1_RagA: Gtr1/RagA 99.1 1.4E-09 3.1E-14 109.9 14.7 160 62-252 1-175 (232)
309 KOG0393 Ras-related small GTPa 99.1 2.3E-10 5.1E-15 111.4 8.0 161 60-252 4-178 (198)
310 TIGR00750 lao LAO/AO transport 99.1 1.7E-09 3.6E-14 114.4 15.0 173 58-253 32-238 (300)
311 KOG4252 GTP-binding protein [S 99.1 7.3E-11 1.6E-15 110.6 3.6 164 53-251 13-179 (246)
312 KOG0071 GTP-binding ADP-ribosy 99.1 3.3E-09 7.1E-14 95.9 13.3 155 61-252 18-177 (180)
313 TIGR00073 hypB hydrogenase acc 99.0 1.7E-09 3.6E-14 108.2 12.3 163 58-251 20-205 (207)
314 PF03144 GTP_EFTU_D2: Elongati 99.0 3.5E-10 7.7E-15 93.7 5.7 73 277-351 1-74 (74)
315 KOG0052 Translation elongation 99.0 1.3E-10 2.9E-15 122.4 3.4 211 59-294 6-251 (391)
316 TIGR02836 spore_IV_A stage IV 99.0 3.6E-09 7.8E-14 112.8 13.9 168 61-254 18-238 (492)
317 PF03308 ArgK: ArgK protein; 99.0 7.8E-10 1.7E-14 111.6 8.5 166 59-252 28-229 (266)
318 KOG1532 GTPase XAB1, interacts 99.0 1.7E-09 3.6E-14 108.4 10.7 181 58-252 17-263 (366)
319 COG4917 EutP Ethanolamine util 99.0 1.4E-09 2.9E-14 96.8 8.0 138 61-250 2-143 (148)
320 COG1703 ArgK Putative periplas 99.0 4.5E-09 9.8E-14 107.3 12.6 167 59-253 50-254 (323)
321 cd03693 EF1_alpha_II EF1_alpha 98.9 7.2E-09 1.6E-13 89.7 10.1 85 260-355 2-90 (91)
322 PF03029 ATP_bind_1: Conserved 98.9 3.5E-09 7.5E-14 108.0 9.4 112 120-250 92-234 (238)
323 smart00053 DYNc Dynamin, GTPas 98.9 1.3E-08 2.9E-13 103.5 12.3 128 59-186 25-207 (240)
324 cd03698 eRF3_II_like eRF3_II_l 98.9 1.1E-08 2.5E-13 86.8 9.6 79 262-352 1-83 (83)
325 KOG0072 GTP-binding ADP-ribosy 98.9 4.2E-09 9E-14 95.7 7.1 157 60-253 18-179 (182)
326 KOG0074 GTP-binding ADP-ribosy 98.9 1.3E-08 2.8E-13 92.2 10.1 143 60-225 17-165 (185)
327 TIGR00991 3a0901s02IAP34 GTP-b 98.9 3.4E-08 7.5E-13 103.2 14.8 115 59-184 37-166 (313)
328 KOG2486 Predicted GTPase [Gene 98.8 5.3E-09 1.2E-13 105.3 7.4 156 57-225 133-302 (320)
329 PRK09601 GTP-binding protein Y 98.8 5.6E-08 1.2E-12 104.1 15.0 81 61-153 3-107 (364)
330 PF05049 IIGP: Interferon-indu 98.8 3.2E-08 6.9E-13 106.0 12.8 170 60-257 35-222 (376)
331 PF00350 Dynamin_N: Dynamin fa 98.8 1.2E-08 2.5E-13 98.0 8.6 64 118-181 100-168 (168)
332 PF00735 Septin: Septin; Inte 98.8 2E-07 4.3E-12 97.4 18.1 142 61-207 5-176 (281)
333 TIGR00101 ureG urease accessor 98.8 4.9E-08 1.1E-12 97.0 11.0 103 118-252 91-195 (199)
334 KOG1673 Ras GTPases [General f 98.7 3.9E-08 8.5E-13 90.5 8.7 162 60-252 20-185 (205)
335 cd01342 Translation_Factor_II_ 98.7 7.6E-08 1.6E-12 79.9 9.8 80 263-351 1-82 (83)
336 COG5192 BMS1 GTP-binding prote 98.7 1E-06 2.2E-11 95.7 19.8 143 59-224 68-211 (1077)
337 PF04548 AIG1: AIG1 family; I 98.7 2.6E-07 5.7E-12 92.7 14.0 114 61-185 1-130 (212)
338 KOG3883 Ras family small GTPas 98.7 7.1E-07 1.5E-11 82.2 15.0 167 59-263 8-185 (198)
339 KOG0077 Vesicle coat complex C 98.7 1.4E-07 3.1E-12 88.0 10.2 114 60-188 20-138 (193)
340 cd04089 eRF3_II eRF3_II: domai 98.6 1.7E-07 3.7E-12 79.4 9.5 78 262-352 1-82 (82)
341 KOG1490 GTP-binding protein CR 98.6 4.8E-08 1E-12 105.2 7.2 149 59-228 167-330 (620)
342 KOG1486 GTP-binding protein DR 98.6 3.5E-07 7.5E-12 90.8 12.2 83 61-155 63-152 (364)
343 cd03695 CysN_NodQ_II CysN_NodQ 98.6 3E-07 6.5E-12 77.7 9.9 79 263-352 1-81 (81)
344 PTZ00258 GTP-binding protein; 98.6 2.5E-07 5.4E-12 100.3 11.1 83 59-153 20-126 (390)
345 cd01900 YchF YchF subfamily. 98.6 1.5E-07 3.3E-12 97.7 8.0 80 63-154 1-104 (274)
346 KOG0096 GTPase Ran/TC4/GSP1 (n 98.6 1.3E-07 2.8E-12 90.2 6.7 144 59-225 9-155 (216)
347 PRK10463 hydrogenase nickel in 98.5 3.2E-07 7E-12 95.3 10.0 162 57-250 101-286 (290)
348 KOG1707 Predicted Ras related/ 98.5 3.7E-07 8E-12 100.4 10.9 158 61-252 10-174 (625)
349 cd03697 EFTU_II EFTU_II: Elong 98.5 3.7E-07 8E-12 78.3 8.7 82 263-353 1-86 (87)
350 cd01859 MJ1464 MJ1464. This f 98.5 5.3E-07 1.1E-11 85.7 9.5 95 133-254 3-97 (156)
351 cd03696 selB_II selB_II: this 98.5 6.3E-07 1.4E-11 76.1 8.8 79 263-352 1-83 (83)
352 cd03694 GTPBP_II Domain II of 98.5 1.1E-06 2.4E-11 75.3 10.2 83 263-352 1-87 (87)
353 COG5019 CDC3 Septin family pro 98.5 5.9E-06 1.3E-10 87.1 16.6 142 60-206 23-195 (373)
354 KOG4423 GTP-binding protein-li 98.4 3.2E-08 6.9E-13 93.9 -1.5 161 57-252 22-193 (229)
355 TIGR00993 3a0901s04IAP86 chlor 98.4 9.9E-06 2.1E-10 91.6 17.5 115 60-185 118-250 (763)
356 COG0378 HypB Ni2+-binding GTPa 98.4 2.1E-06 4.6E-11 83.1 10.1 154 60-251 13-199 (202)
357 KOG1547 Septin CDC10 and relat 98.3 2.3E-05 5.1E-10 77.6 16.7 143 59-208 45-219 (336)
358 KOG0410 Predicted GTP binding 98.3 4.1E-06 8.8E-11 86.3 10.8 147 59-253 177-341 (410)
359 KOG2655 Septin family protein 98.3 1.5E-05 3.1E-10 84.8 15.3 140 60-205 21-190 (366)
360 KOG3886 GTP-binding protein [S 98.3 1.7E-06 3.6E-11 85.2 7.4 118 60-188 4-133 (295)
361 COG0012 Predicted GTPase, prob 98.3 1.2E-05 2.5E-10 85.4 14.2 81 61-153 3-108 (372)
362 PRK10416 signal recognition pa 98.2 1.4E-05 3E-10 85.0 14.1 124 59-184 113-272 (318)
363 cd03115 SRP The signal recogni 98.2 7.6E-06 1.6E-10 79.2 10.9 122 62-185 2-153 (173)
364 KOG1954 Endocytosis/signaling 98.2 1.6E-05 3.5E-10 83.1 13.6 134 55-190 53-228 (532)
365 cd03110 Fer4_NifH_child This p 98.2 2.1E-05 4.6E-10 76.5 13.9 66 117-184 91-156 (179)
366 cd01858 NGP_1 NGP-1. Autoanti 98.2 4.4E-06 9.5E-11 79.6 8.7 91 136-252 2-94 (157)
367 KOG0448 Mitofusin 1 GTPase, in 98.2 1.2E-05 2.6E-10 90.1 12.1 159 59-224 108-311 (749)
368 cd01855 YqeH YqeH. YqeH is an 98.2 4.6E-06 1E-10 82.0 7.6 105 127-253 19-125 (190)
369 TIGR00064 ftsY signal recognit 98.2 2.9E-05 6.3E-10 80.9 13.8 124 58-184 70-230 (272)
370 PRK14722 flhF flagellar biosyn 98.2 6.4E-06 1.4E-10 89.0 9.1 126 59-184 136-294 (374)
371 cd01856 YlqF YlqF. Proteins o 98.1 6.7E-06 1.4E-10 79.6 7.8 99 126-253 2-101 (171)
372 cd01857 HSR1_MMR1 HSR1/MMR1. 98.1 1E-05 2.2E-10 75.8 8.5 79 134-225 3-83 (141)
373 cd03114 ArgK-like The function 98.1 1.3E-05 2.7E-10 75.9 9.2 58 118-182 91-148 (148)
374 TIGR01425 SRP54_euk signal rec 98.1 2E-05 4.3E-10 86.5 11.6 124 59-184 99-252 (429)
375 cd01858 NGP_1 NGP-1. Autoanti 98.1 6.7E-06 1.5E-10 78.3 6.5 56 60-129 102-157 (157)
376 KOG1487 GTP-binding protein DR 98.0 1.1E-05 2.4E-10 80.8 7.4 112 61-185 60-183 (358)
377 TIGR03596 GTPase_YlqF ribosome 98.0 1.4E-05 3.1E-10 83.6 8.4 100 126-254 4-104 (276)
378 cd04178 Nucleostemin_like Nucl 98.0 1E-05 2.3E-10 78.4 6.5 56 60-129 117-172 (172)
379 TIGR00157 ribosome small subun 98.0 1.3E-05 2.9E-10 82.2 7.6 86 138-249 32-119 (245)
380 cd01849 YlqF_related_GTPase Yl 98.0 2.5E-05 5.4E-10 74.3 8.2 84 144-253 1-85 (155)
381 PF05783 DLIC: Dynein light in 98.0 9.8E-05 2.1E-09 82.3 13.9 61 171-252 196-263 (472)
382 KOG3905 Dynein light intermedi 98.0 0.00013 2.9E-09 75.3 13.6 61 171-252 222-289 (473)
383 cd01849 YlqF_related_GTPase Yl 97.9 1.7E-05 3.7E-10 75.4 6.2 57 59-129 99-155 (155)
384 cd01857 HSR1_MMR1 HSR1/MMR1. 97.9 1.7E-05 3.6E-10 74.3 5.9 55 62-130 85-139 (141)
385 PRK14974 cell division protein 97.9 6.5E-05 1.4E-09 80.4 10.8 121 59-184 139-292 (336)
386 PF03193 DUF258: Protein of un 97.9 8.6E-06 1.9E-10 77.6 3.5 66 61-133 36-101 (161)
387 cd02036 MinD Bacterial cell di 97.9 0.00013 2.9E-09 70.4 11.9 120 64-185 3-128 (179)
388 PRK09563 rbgA GTPase YlqF; Rev 97.9 2.5E-05 5.4E-10 82.2 7.1 101 126-255 7-108 (287)
389 cd03692 mtIF2_IVc mtIF2_IVc: t 97.8 0.0002 4.4E-09 60.9 10.6 78 265-350 3-82 (84)
390 cd01855 YqeH YqeH. YqeH is an 97.8 2.4E-05 5.2E-10 77.0 5.8 63 61-129 128-190 (190)
391 PRK12289 GTPase RsgA; Reviewed 97.8 6.3E-05 1.4E-09 81.1 9.3 84 139-249 86-171 (352)
392 cd03112 CobW_like The function 97.8 6.5E-05 1.4E-09 71.9 8.3 119 62-183 2-158 (158)
393 PRK12727 flagellar biosynthesi 97.8 0.00012 2.5E-09 81.9 11.0 124 59-184 349-497 (559)
394 cd03688 eIF2_gamma_II eIF2_gam 97.8 0.00019 4.2E-09 63.3 9.7 80 259-342 2-95 (113)
395 cd01856 YlqF YlqF. Proteins o 97.8 5.5E-05 1.2E-09 73.2 6.9 56 60-129 115-170 (171)
396 TIGR03597 GTPase_YqeH ribosome 97.8 2.9E-05 6.3E-10 84.3 5.4 115 61-185 155-280 (360)
397 cd03111 CpaE_like This protein 97.7 0.00023 5.1E-09 63.2 10.0 99 63-180 2-106 (106)
398 TIGR00092 GTP-binding protein 97.7 9.4E-05 2E-09 79.6 8.6 83 61-154 3-109 (368)
399 PF00448 SRP54: SRP54-type pro 97.7 0.00024 5.1E-09 70.5 10.8 123 61-185 2-154 (196)
400 cd02038 FleN-like FleN is a me 97.7 0.00047 1E-08 64.4 12.1 102 66-183 6-109 (139)
401 TIGR03596 GTPase_YlqF ribosome 97.7 0.00011 2.5E-09 76.8 8.1 56 60-129 118-173 (276)
402 PRK00771 signal recognition pa 97.7 0.00021 4.5E-09 79.1 10.4 121 59-184 94-245 (437)
403 TIGR03597 GTPase_YqeH ribosome 97.7 0.00013 2.8E-09 79.2 8.7 102 129-251 50-151 (360)
404 cd03702 IF2_mtIF2_II This fami 97.7 0.00026 5.6E-09 61.6 8.7 76 264-351 2-78 (95)
405 PRK12288 GTPase RsgA; Reviewed 97.6 6.6E-05 1.4E-09 80.8 5.9 65 62-133 207-271 (347)
406 PRK09563 rbgA GTPase YlqF; Rev 97.6 0.00011 2.5E-09 77.2 7.1 58 60-131 121-178 (287)
407 COG0523 Putative GTPases (G3E 97.6 0.00047 1E-08 73.4 11.7 147 61-221 2-184 (323)
408 PRK00098 GTPase RsgA; Reviewed 97.6 0.00016 3.5E-09 76.4 8.2 84 139-248 77-162 (298)
409 cd00066 G-alpha G protein alph 97.6 0.00031 6.8E-09 74.9 10.2 81 103-183 145-240 (317)
410 cd01851 GBP Guanylate-binding 97.6 0.00014 3E-09 73.7 7.0 87 59-153 6-102 (224)
411 PRK11889 flhF flagellar biosyn 97.6 0.00031 6.6E-09 75.9 9.7 123 60-185 241-391 (436)
412 cd02042 ParA ParA and ParB of 97.6 0.00045 9.8E-09 60.7 9.3 82 63-165 2-84 (104)
413 cd01859 MJ1464 MJ1464. This f 97.5 0.00014 3.1E-09 69.0 6.2 57 59-129 100-156 (156)
414 TIGR00157 ribosome small subun 97.5 0.00014 2.9E-09 74.8 6.2 64 61-132 121-184 (245)
415 PRK05703 flhF flagellar biosyn 97.5 0.00042 9.1E-09 76.7 10.4 123 60-184 221-370 (424)
416 KOG0447 Dynamin-like GTP bindi 97.5 0.0011 2.3E-08 72.7 12.7 140 57-196 305-507 (980)
417 smart00275 G_alpha G protein a 97.5 0.00063 1.4E-08 73.3 11.2 82 103-184 168-264 (342)
418 cd01854 YjeQ_engC YjeQ/EngC. 97.5 0.00032 6.9E-09 73.8 8.4 84 139-249 75-160 (287)
419 PRK11537 putative GTP-binding 97.5 0.00084 1.8E-08 71.6 11.6 126 59-185 3-164 (318)
420 PRK12289 GTPase RsgA; Reviewed 97.5 0.00012 2.6E-09 78.9 5.1 65 62-133 174-238 (352)
421 TIGR00959 ffh signal recogniti 97.5 0.00044 9.6E-09 76.4 9.6 122 59-183 98-251 (428)
422 TIGR02475 CobW cobalamin biosy 97.5 0.00084 1.8E-08 72.3 11.5 140 59-200 3-200 (341)
423 COG1162 Predicted GTPases [Gen 97.4 0.00014 3.1E-09 75.6 5.0 66 61-133 165-230 (301)
424 cd01854 YjeQ_engC YjeQ/EngC. 97.4 0.00021 4.5E-09 75.2 6.3 66 61-133 162-227 (287)
425 PRK12288 GTPase RsgA; Reviewed 97.4 0.0007 1.5E-08 73.0 10.3 87 140-250 118-205 (347)
426 KOG3887 Predicted small GTPase 97.4 0.00075 1.6E-08 67.2 9.3 138 61-209 28-175 (347)
427 PRK12726 flagellar biosynthesi 97.4 0.00033 7.1E-09 75.4 7.3 123 58-184 204-355 (407)
428 PRK10867 signal recognition pa 97.4 0.00074 1.6E-08 74.7 10.2 122 59-183 99-252 (433)
429 COG1161 Predicted GTPases [Gen 97.4 0.00024 5.1E-09 76.0 5.7 56 61-130 133-188 (322)
430 cd02037 MRP-like MRP (Multiple 97.3 0.00046 9.9E-09 66.5 6.9 115 67-183 7-133 (169)
431 KOG1491 Predicted GTP-binding 97.3 0.00058 1.3E-08 71.3 7.9 84 59-154 19-126 (391)
432 COG3640 CooC CO dehydrogenase 97.3 0.00041 8.8E-09 69.3 6.5 63 118-183 133-197 (255)
433 cd03703 aeIF5B_II aeIF5B_II: T 97.3 0.0015 3.2E-08 58.0 9.3 83 264-351 2-93 (110)
434 PRK13796 GTPase YqeH; Provisio 97.3 0.00034 7.4E-09 76.1 6.2 61 61-130 161-221 (365)
435 PF09547 Spore_IV_A: Stage IV 97.3 0.0041 8.9E-08 67.2 13.4 168 61-254 18-238 (492)
436 PRK13796 GTPase YqeH; Provisio 97.2 0.0014 3E-08 71.4 9.5 100 131-252 58-158 (365)
437 PRK01889 GTPase RsgA; Reviewed 97.2 0.0015 3.2E-08 70.8 9.8 82 140-248 110-192 (356)
438 PRK12723 flagellar biosynthesi 97.2 0.0028 6.2E-08 69.2 11.8 123 60-184 174-325 (388)
439 PRK14721 flhF flagellar biosyn 97.2 0.0008 1.7E-08 74.0 7.5 123 59-184 190-339 (420)
440 cd03701 IF2_IF5B_II IF2_IF5B_I 97.2 0.0018 4E-08 56.4 8.3 76 264-351 2-78 (95)
441 cd01983 Fer4_NifH The Fer4_Nif 97.1 0.0034 7.4E-08 53.4 9.4 77 63-163 2-79 (99)
442 PHA02518 ParA-like protein; Pr 97.1 0.0033 7E-08 62.5 10.6 64 118-183 76-145 (211)
443 PRK06731 flhF flagellar biosyn 97.1 0.0025 5.5E-08 66.2 10.0 124 59-185 74-225 (270)
444 PRK00098 GTPase RsgA; Reviewed 97.1 0.00076 1.6E-08 71.4 6.2 65 61-132 165-229 (298)
445 PRK13849 putative crown gall t 97.1 0.0014 3.1E-08 66.6 7.7 65 117-183 82-152 (231)
446 COG1419 FlhF Flagellar GTP-bin 97.1 0.0021 4.5E-08 69.5 8.9 146 59-221 202-373 (407)
447 TIGR01007 eps_fam capsular exo 97.1 0.0025 5.4E-08 63.3 9.1 66 118-184 127-193 (204)
448 TIGR01969 minD_arch cell divis 97.0 0.0039 8.4E-08 63.7 10.5 65 118-184 108-173 (251)
449 PRK12724 flagellar biosynthesi 97.0 0.002 4.4E-08 70.5 8.0 122 61-184 224-372 (432)
450 PF02492 cobW: CobW/HypB/UreG, 97.0 0.0022 4.7E-08 62.5 7.5 121 62-184 2-154 (178)
451 PRK06995 flhF flagellar biosyn 96.9 0.0026 5.7E-08 71.1 8.3 168 60-251 256-449 (484)
452 PRK14723 flhF flagellar biosyn 96.9 0.0045 9.7E-08 72.5 10.5 124 60-184 185-336 (767)
453 cd02117 NifH_like This family 96.9 0.0048 1E-07 61.8 9.1 67 117-184 115-188 (212)
454 PRK13695 putative NTPase; Prov 96.8 0.0031 6.7E-08 61.1 7.3 35 147-181 99-136 (174)
455 TIGR01968 minD_bact septum sit 96.8 0.0071 1.5E-07 62.1 10.3 64 118-183 111-175 (261)
456 PRK08099 bifunctional DNA-bind 96.8 0.0076 1.6E-07 66.3 10.8 30 57-86 216-245 (399)
457 KOG1534 Putative transcription 96.7 0.005 1.1E-07 60.4 7.7 68 118-185 97-178 (273)
458 KOG2485 Conserved ATP/GTP bind 96.7 0.0022 4.9E-08 66.5 5.3 103 60-169 143-246 (335)
459 COG1162 Predicted GTPases [Gen 96.6 0.0089 1.9E-07 62.4 9.4 82 143-249 80-163 (301)
460 cd02032 Bchl_like This family 96.6 0.012 2.6E-07 61.1 9.9 65 118-183 115-184 (267)
461 TIGR03371 cellulose_yhjQ cellu 96.6 0.024 5.2E-07 57.8 11.9 64 119-184 115-181 (246)
462 COG0541 Ffh Signal recognition 96.5 0.015 3.2E-07 63.2 10.5 123 59-184 99-252 (451)
463 PF01656 CbiA: CobQ/CobB/MinD/ 96.5 0.002 4.3E-08 63.0 3.6 65 118-184 94-161 (195)
464 KOG3859 Septins (P-loop GTPase 96.5 0.015 3.3E-07 59.3 9.6 133 60-203 42-206 (406)
465 TIGR03815 CpaE_hom_Actino heli 96.5 0.031 6.7E-07 59.8 12.8 64 118-183 204-267 (322)
466 KOG1424 Predicted GTP-binding 96.5 0.0023 5E-08 70.3 3.9 72 60-147 314-387 (562)
467 CHL00175 minD septum-site dete 96.4 0.024 5.3E-07 59.2 11.1 64 118-183 126-190 (281)
468 smart00010 small_GTPase Small 96.3 0.0054 1.2E-07 54.9 5.0 22 62-83 2-23 (124)
469 PF14578 GTP_EFTU_D4: Elongati 96.3 0.036 7.8E-07 46.5 9.2 75 262-351 4-80 (81)
470 TIGR03348 VI_IcmF type VI secr 96.3 0.0043 9.3E-08 77.3 5.4 116 59-184 110-256 (1169)
471 KOG2743 Cobalamin synthesis pr 96.3 0.014 3E-07 60.2 8.0 142 55-198 52-236 (391)
472 PRK13185 chlL protochlorophyll 96.3 0.017 3.8E-07 59.9 9.1 65 117-182 116-185 (270)
473 KOG0780 Signal recognition par 96.3 0.017 3.6E-07 61.6 8.7 122 59-183 100-252 (483)
474 cd04178 Nucleostemin_like Nucl 96.2 0.0075 1.6E-07 58.5 5.4 41 144-184 1-43 (172)
475 CHL00072 chlL photochlorophyll 96.2 0.022 4.8E-07 60.0 9.3 65 118-183 115-184 (290)
476 KOG4181 Uncharacterized conser 96.2 0.057 1.2E-06 56.8 11.7 132 59-192 187-363 (491)
477 cd02040 NifH NifH gene encodes 96.1 0.027 5.7E-07 58.4 9.5 63 118-180 116-184 (270)
478 cd00550 ArsA_ATPase Oxyanion-t 96.1 0.11 2.3E-06 53.8 13.8 69 117-185 123-203 (254)
479 PRK10818 cell division inhibit 96.0 0.042 9E-07 57.0 10.4 64 118-183 113-185 (270)
480 cd02035 ArsA ArsA ATPase funct 96.0 0.064 1.4E-06 54.0 11.3 68 119-186 114-185 (217)
481 KOG1533 Predicted GTPase [Gene 96.0 0.008 1.7E-07 60.0 4.3 67 118-184 96-176 (290)
482 KOG0082 G-protein alpha subuni 95.9 0.045 9.8E-07 58.6 9.9 82 102-183 178-274 (354)
483 PRK10751 molybdopterin-guanine 95.9 0.024 5.3E-07 54.9 7.2 25 59-83 5-29 (173)
484 TIGR01281 DPOR_bchL light-inde 95.8 0.033 7.1E-07 57.8 8.7 66 117-183 114-184 (268)
485 COG0552 FtsY Signal recognitio 95.8 0.069 1.5E-06 56.4 10.6 120 59-183 138-296 (340)
486 PRK13230 nitrogenase reductase 95.8 0.049 1.1E-06 56.9 9.7 39 117-155 115-154 (279)
487 COG1121 ZnuC ABC-type Mn/Zn tr 95.7 0.04 8.6E-07 56.5 8.5 23 61-83 31-53 (254)
488 TIGR03574 selen_PSTK L-seryl-t 95.7 0.068 1.5E-06 54.9 10.3 21 63-83 2-22 (249)
489 PRK01889 GTPase RsgA; Reviewed 95.7 0.013 2.7E-07 63.7 4.9 65 61-132 196-260 (356)
490 PRK13232 nifH nitrogenase redu 95.5 0.07 1.5E-06 55.6 9.7 67 116-182 114-185 (273)
491 COG1341 Predicted GTPase or GT 95.5 0.029 6.3E-07 60.5 6.7 29 58-86 71-99 (398)
492 TIGR01287 nifH nitrogenase iro 95.4 0.065 1.4E-06 55.8 8.8 63 118-180 115-183 (275)
493 KOG1707 Predicted Ras related/ 95.3 0.18 4E-06 56.6 12.2 115 59-186 424-541 (625)
494 KOG2484 GTPase [General functi 95.3 0.015 3.2E-07 62.3 3.6 57 58-128 250-306 (435)
495 PF05621 TniB: Bacterial TniB 95.2 0.085 1.8E-06 55.3 9.0 31 54-84 55-85 (302)
496 cd03116 MobB Molybdenum is an 95.2 0.022 4.9E-07 54.5 4.2 23 61-83 2-24 (159)
497 PF13555 AAA_29: P-loop contai 95.0 0.024 5.3E-07 45.1 3.4 22 62-83 25-46 (62)
498 PF08433 KTI12: Chromatin asso 95.0 0.14 2.9E-06 53.5 9.6 102 62-183 3-109 (270)
499 COG0563 Adk Adenylate kinase a 94.9 0.038 8.2E-07 53.9 5.1 105 62-177 2-110 (178)
500 TIGR03018 pepcterm_TyrKin exop 94.9 0.31 6.7E-06 48.5 11.8 57 120-179 150-207 (207)
No 1
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=100.00 E-value=1.8e-178 Score=1378.57 Aligned_cols=589 Identities=51% Similarity=0.812 Sum_probs=569.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCC----CCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGA----DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~----~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
..+||||||+|+|||||||+++||+++|. ....+++||++++|+||||||.++++.+.|++++|||+|||||+||+
T Consensus 3 ~~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFG 82 (603)
T COG1217 3 EDIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFG 82 (603)
T ss_pred cccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCcc
Confidence 36899999999999999999999999995 44568999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+|++|.|.|+|+++|+|||.+|++|||++++++|.+.|+++|||+||+|++++++ +++.++++|||..+|++++|++
T Consensus 83 GEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp---~~Vvd~vfDLf~~L~A~deQLd 159 (603)
T COG1217 83 GEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARP---DEVVDEVFDLFVELGATDEQLD 159 (603)
T ss_pred chhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCH---HHHHHHHHHHHHHhCCChhhCC
Confidence 9999999999999999999999999999999999999999999999999999999 6789999999999999999999
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd 293 (662)
||++|+||+.||+..+. .....++.+||++|++|+|+|..+.++||+++|+.++|++|+|++.+|||++|++++||
T Consensus 160 FPivYAS~~~G~a~~~~----~~~~~~m~pLfe~I~~hvp~P~~~~d~PlQ~qvt~Ldyn~y~GrIgigRi~~G~vk~~q 235 (603)
T COG1217 160 FPIVYASARNGTASLDP----EDEADDMAPLFETILDHVPAPKGDLDEPLQMQVTQLDYNSYVGRIGIGRIFRGTVKPNQ 235 (603)
T ss_pred CcEEEeeccCceeccCc----cccccchhHHHHHHHHhCCCCCCCCCCCeEEEEEeeccccccceeEEEEEecCcccCCC
Confidence 99999999999976642 33344799999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCCCCCCCcCCCCeeeeee
Q 006068 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTF 373 (662)
Q Consensus 294 ~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~ 373 (662)
.|.+...++ ..+..||++++.|.|.++.++++|.|||||||+|++++.+|||||+++++.+||.+++++|+++|+|
T Consensus 236 ~V~~i~~~g----~~~~gri~kllgf~GL~R~ei~eA~AGDIVaiaG~~~~~igdTi~d~~~~~aLp~l~iDePTlsMtf 311 (603)
T COG1217 236 QVALIKSDG----TTENGRITKLLGFLGLERIEIEEAEAGDIVAIAGLEDINIGDTICDPDNPEALPALSVDEPTLSMTF 311 (603)
T ss_pred eEEEEcCCC----cEEeeEEEeeeeccceeeeecccccccCEEEEcCcccccccccccCCCCccCCCCcccCCCceEEEE
Confidence 999987542 4578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhcCeEEEEeCCEEEEEE
Q 006068 374 GVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKT 452 (662)
Q Consensus 374 ~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrreg~ev~vs~P~V~yrE 452 (662)
.+|+|||+|+||+++|++++++||.++++.|++|+|++. +.+.|.|+|||||||.||+|+|||||||++||+|+|+|||
T Consensus 312 ~vN~SPfAG~EGk~vTSR~i~dRL~~El~~NValrVe~t~~pd~f~VsGRGELhLsILiE~MRREGfEl~VsrP~Vi~ke 391 (603)
T COG1217 312 SVNDSPFAGKEGKFVTSRQIRDRLNKELETNVALRVEETESPDAFEVSGRGELHLSILIENMRREGFELQVSRPEVIIKE 391 (603)
T ss_pred EecCCCCCCcCCceeeHHHHHHHHHHHhhhceeEEEeecCCCCeEEEeccceeehHHHHHHhhhcceEEEecCceEEEEe
Confidence 999999999999999999999999999999999999998 7799999999999999999999999999999999999999
Q ss_pred ecCeeeecceeEEEEE----chhHHHHhhccceEEEeecccc--C-CEEEEEEEeccccccchhhhccccceeeEEeeee
Q 006068 453 ENGVKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRA 525 (662)
Q Consensus 453 ~~g~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~ 525 (662)
++|+++||||+++|+| +|.||+.|+.|||+| .+|. + ||+|++|.+|+|+|+||+++|+++|+|+|++++.
T Consensus 392 idG~~~EP~E~v~iDv~ee~~G~Vie~lg~RKgem---~~M~~~g~G~~Rlef~iPaRGLIGfrteFlt~TrG~Gi~n~~ 468 (603)
T COG1217 392 IDGVKCEPFEEVTIDVPEEHQGAVIEKLGERKGEM---KDMAPDGKGRVRLEFVIPARGLIGFRTEFLTMTRGTGIMNHS 468 (603)
T ss_pred cCCcCcCcceeEEecCchhhhhHHHHHHhhhhHhH---hhcccCCCCeEEEEEEccCcceeccchheeeccccceeeeec
Confidence 9999999999999999 999999999999999 9999 4 8999999999999999999999999999999999
Q ss_pred ecceeeccCCCCCccceeEEEccCcchhhhhhcCccccccccccCCCcccCceEEeecCCCCCceeeccccccccccccC
Q 006068 526 FLKYEKHRGLLGNVRKGVLVSMGFGSITAHALMSLEPRGILFVPPGTETYDGMIIGEHSRDTDLDVNPVRAKELSNVRAA 605 (662)
Q Consensus 526 f~~y~~~~g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~~ 605 (662)
|+||+|+.|++++|.||+|||+++|++++|||++|||||+|||+||++||+|||||||||+|||+|||||+|||||||||
T Consensus 469 F~~Y~p~~g~i~~R~nGvLiS~~~G~a~~yal~~lqdRG~~Fi~pG~~vYeGmiiG~hsR~nDL~VN~~k~K~LTN~Ras 548 (603)
T COG1217 469 FDHYRPVKGEIGGRHNGVLISNETGKAVAYALFNLQDRGKLFIEPGTKVYEGMIIGEHSRDNDLTVNVLKGKKLTNMRAS 548 (603)
T ss_pred ccccccccccccccccceEEEcCCCcchHhhhhhHHhcCceeecCCCceeeeeEEeeecCccCceecccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeeCCCcccCHHHHHccccCCeeEEecCCceEeeeccCChhhhhhhhcCC
Q 006068 606 GKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRKRYLDVNKRKTMSKRP 660 (662)
Q Consensus 606 ~~~~~~~~~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~~~~~~~~~~~~~~ 660 (662)
|+|++++|+||+.||||+|||||+|||||||||+||||||++|++++|||+.|++
T Consensus 549 g~Dea~~L~~p~~mtLE~Ale~i~dDElvEVTP~sIRlRK~~L~~n~Rkr~~k~~ 603 (603)
T COG1217 549 GKDEAVTLTPPIRMTLERALEFIADDELVEVTPESIRLRKKILNENERKRAEKRK 603 (603)
T ss_pred CCccceEecCcccccHHHHHhhcCCCceEEecchHeehhhhhcChhhhhhhhccC
Confidence 9999999999999999999999999999999999999999999999999987753
No 2
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=100.00 E-value=2.4e-152 Score=1287.22 Aligned_cols=582 Identities=57% Similarity=0.898 Sum_probs=553.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCC----CCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGAD----IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~----~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
+|||+|+||+|||||||+++|++++|.. ....++||++++|++||+|+.++...+.|+++++||||||||.||.++
T Consensus 1 iRNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 1 IRNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 6899999999999999999999988842 234689999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++++++++|++||||||.+|+++||+++|..+...++|+|||+||+|+.++++ .++.+++.++|..++..++++.+|
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~~---~~v~~ei~~l~~~~g~~~e~l~~p 157 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARP---DEVVDEVFDLFAELGADDEQLDFP 157 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcCH---HHHHHHHHHHHHhhccccccccCc
Confidence 99999999999999999999999999999999999999999999999977655 557788888888888877788899
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEE
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKV 295 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V 295 (662)
++++||++|++..+.. ....|+.+||+.|++++|+|..+.++||+++|+++++++|.|++++|||++|+|++||.|
T Consensus 158 vl~~SA~~g~~~~~~~----~~~~gi~~Lld~Iv~~lP~P~~~~~~pl~~~V~~i~~d~~~Grv~~gRV~sG~lk~G~~V 233 (594)
T TIGR01394 158 IVYASGRAGWASLDLD----DPSDNMAPLFDAIVRHVPAPKGDLDEPLQMLVTNLDYDEYLGRIAIGRVHRGTVKKGQQV 233 (594)
T ss_pred EEechhhcCcccccCc----ccccCHHHHHHHHHHhCCCCCCCCCCCEEEEEEEEEeeCCCceEEEEEEEeCEEccCCEE
Confidence 9999999998654432 234489999999999999998888999999999999999999999999999999999999
Q ss_pred EEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCCCCCCCcCCCCeeeeeeee
Q 006068 296 HGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGV 375 (662)
Q Consensus 296 ~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~ 375 (662)
++.+.++ .....+|++|+.+.|.++.++++|.|||||+|+|++++.+|||||+++++.++|++++|+|+++|+|.|
T Consensus 234 ~~~~~~~----~~~~~kV~~i~~~~g~~~~~v~~a~aGDiv~i~gl~~i~~Gdtl~~~~~~~~l~~~~~~~P~~~~~~~~ 309 (594)
T TIGR01394 234 ALMKRDG----TIENGRISKLLGFEGLERVEIDEAGAGDIVAVAGLEDINIGETIADPEVPEALPTITVDEPTLSMTFSV 309 (594)
T ss_pred EEecCCC----ceeEEEEEEEEEccCCCceECCEECCCCEEEEeCCcccCCCCEEeCCCccccCCCCCCCCCeEEEEEEe
Confidence 9987531 224689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhcCeEEEEeCCEEEEEEec
Q 006068 376 NDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTEN 454 (662)
Q Consensus 376 ~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrreg~ev~vs~P~V~yrE~~ 454 (662)
|++||+++|++++|+++|.+||+|++++||+|+|+++ .+++|+|+|||||||+|++|+|||||||+++++|+|+|||++
T Consensus 310 ~~~p~~~~e~k~~t~~~l~~~L~k~~~~d~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yrei~ 389 (594)
T TIGR01394 310 NDSPLAGKEGKKVTSRHIRDRLMRELETNVALRVEDTESADKFEVSGRGELHLSILIETMRREGFELQVGRPQVIYKEID 389 (594)
T ss_pred cCCCcccccchhhhHHHHHHHHHHhhccCCeEEEEEecCCCeEEEEEECHHHHHHHHHHHhccCceEEEeCCEEEEEeCC
Confidence 9999999999999999999999999999999999998 778899999999999999999999999999999999999999
Q ss_pred CeeeecceeEEEEE----chhHHHHhhccceEEEeecccc--C-CEEEEEEEeccccccchhhhccccceeeEEeeeeec
Q 006068 455 GVKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFL 527 (662)
Q Consensus 455 g~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~ 527 (662)
|+++|||++++|+| +|+||++|++|||+| ++|+ + |+++|+|.+|+|||+||+++|+|+|+|+|+|++.|+
T Consensus 390 g~llEPi~~~~i~vp~e~~G~v~~~l~~RrG~~---~~~~~~~~~~~~i~~~vP~~~l~~y~~~l~s~T~G~g~~~~~f~ 466 (594)
T TIGR01394 390 GKKLEPIEELTIDVPEEHVGAVIEKLGKRKGEM---VDMEPSGNGRTRLEFKIPSRGLIGFRTEFLTDTRGTGIMNHVFD 466 (594)
T ss_pred CeEECCEEEEEEEechHHHHHHHHHHHHhCCEE---eccEECCCCEEEEEEEeChHHhhhHHHHHHhhcCCeEEEEEEec
Confidence 99999999999999 999999999999999 9999 3 799999999999999999999999999999999999
Q ss_pred ceeeccCCCCCccceeEEEccCcchhhhhhcCccccccccccCCCcccCceEEeecCCCCCceeeccccccccccccCCC
Q 006068 528 KYEKHRGLLGNVRKGVLVSMGFGSITAHALMSLEPRGILFVPPGTETYDGMIIGEHSRDTDLDVNPVRAKELSNVRAAGK 607 (662)
Q Consensus 528 ~y~~~~g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~~~~ 607 (662)
||+|+||+++.|.||+|||+++|++|+|||++||+||+|||+||++||+|||||||+|+|||+|||||+||||||||+|+
T Consensus 467 ~Y~~~~~~i~~~~~g~~~~~~~g~~~~~~~~~~~~rg~~f~~~~~~vy~g~i~g~~~~~~d~~~n~~~~k~~~n~r~~~~ 546 (594)
T TIGR01394 467 EYEPWKGEIETRRNGSLVSMEDGTATAYALWNLQERGVMFVSPGTEVYEGMIIGEHSRENDLDVNPCKAKKLTNVRSSGK 546 (594)
T ss_pred cceeCCCcCCCCCceeEEECCCCcChHhhhhchhhcccEEeCCCCceeCceEEEeecCcCCcEEecccccccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeeCCCcccCHHHHHccccCCeeEEecCCceEeeeccCChhhhhh
Q 006068 608 DENVKLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRKRYLDVNKRKT 655 (662)
Q Consensus 608 ~~~~~~~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~~~~~~~~~ 655 (662)
|++++|+|||.||||+|||||+|||||||||++|||||++|++++|||
T Consensus 547 ~~~~~~~~~~~~~le~~~~~~~~de~~evtp~~~r~rk~~l~~~~r~~ 594 (594)
T TIGR01394 547 DEAVKLTPPRKLSLEQALEYIEDDELVEVTPKSIRLRKRVLDPNERKR 594 (594)
T ss_pred CcceeeCCCccCCHHHHHhhccCCeEEEECchHeEEehhhCCHhhcCC
Confidence 999999999999999999999999999999999999999999999975
No 3
>PRK10218 GTP-binding protein; Provisional
Probab=100.00 E-value=1.4e-150 Score=1270.40 Aligned_cols=590 Identities=47% Similarity=0.753 Sum_probs=556.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCC----CCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGAD----IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~----~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
+++|||+|+||+|||||||+++|++.+|.. ...+++||++++|+++|+|+.++...+.|++++++|||||||.+|.
T Consensus 3 ~~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df~ 82 (607)
T PRK10218 3 EKLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFG 82 (607)
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchhH
Confidence 469999999999999999999999987742 2246899999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.++.++++.+|++|||||+.+|++.||+++|..+...++|+|+|+||+|++++++ .++.+++.++|..+++.+++.+
T Consensus 83 ~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~~---~~vl~ei~~l~~~l~~~~~~~~ 159 (607)
T PRK10218 83 GEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARP---DWVVDQVFDLFVNLDATDEQLD 159 (607)
T ss_pred HHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCch---hHHHHHHHHHHhccCccccccC
Confidence 9999999999999999999999999999999999999999999999999988776 5577788888877777667788
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd 293 (662)
+|++++||++|++..+. .....|+.+||++|++++|+|..++++||+++||++++++|+|++++|||++|+|++||
T Consensus 160 ~PVi~~SA~~G~~~~~~----~~~~~~i~~Lld~Ii~~iP~P~~~~~~Pl~~~V~k~~~d~~~G~i~~gRV~sG~lk~Gd 235 (607)
T PRK10218 160 FPIVYASALNGIAGLDH----EDMAEDMTPLYQAIVDHVPAPDVDLDGPFQMQISQLDYNSYVGVIGIGRIKRGKVKPNQ 235 (607)
T ss_pred CCEEEeEhhcCcccCCc----cccccchHHHHHHHHHhCCCCCCCCCCCeEEEEEeeEecCCCcEEEEEEEEeCcCcCCC
Confidence 99999999999964332 11233799999999999999988889999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCCCCCCCcCCCCeeeeee
Q 006068 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTF 373 (662)
Q Consensus 294 ~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~ 373 (662)
.|++.+.+ + ....+||++|+.+.|.++.++++|.|||||+++|++++.+|||||+.+++.++|++++|+|+++|+|
T Consensus 236 ~v~~~~~~--~--~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~ 311 (607)
T PRK10218 236 QVTIIDSE--G--KTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDTQNVEALPALSVDEPTVSMFF 311 (607)
T ss_pred EEEEecCC--C--cEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecCCCcccCCCCCCCCCeEEEEE
Confidence 99997642 1 2246899999999999999999999999999999999999999999998999999999999999999
Q ss_pred eecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhcCeEEEEeCCEEEEEE
Q 006068 374 GVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKT 452 (662)
Q Consensus 374 ~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrreg~ev~vs~P~V~yrE 452 (662)
.+|+|||+|+++|+.++++++++|.+++++||+|+|+++ .+++++|+|||||||+|++|+|||+|||+++++|+|+|||
T Consensus 312 ~~~~sp~~g~e~k~~t~~~~~~rL~~~~~~D~sl~v~~~~~~~~~~v~g~GelHL~il~e~lrreg~e~~~~~P~V~yre 391 (607)
T PRK10218 312 CVNTSPFCGKEGKFVTSRQILDRLNKELVHNVALRVEETEDADAFRVSGRGELHLSVLIENMRREGFELAVSRPKVIFRE 391 (607)
T ss_pred EeCCCccccchhhhhhHHHHHHHHHHhhCCCCeEEEEEcCCCCeEEEEEEcHHHHHHHHHHHHhCCceEEEeCCEEEEEE
Confidence 999999999999999999999999999999999999987 7788999999999999999999999999999999999999
Q ss_pred ecCeeeecceeEEEEE----chhHHHHhhccceEEEeecccc---CCEEEEEEEeccccccchhhhccccceeeEEeeee
Q 006068 453 ENGVKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRA 525 (662)
Q Consensus 453 ~~g~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~---~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~ 525 (662)
.+|+++|||++++|+| +|+||++|++|||+| ++|+ +++++|+|.+|+|||+||+++|+|+|+|+|+|++.
T Consensus 392 t~g~klEPi~~v~i~vP~e~~G~V~~~l~~RrG~~---~~m~~~~~~~~~l~~~vP~~~l~~y~~~l~s~T~G~g~~~~~ 468 (607)
T PRK10218 392 IDGRKQEPYENVTLDVEEQHQGSVMQALGERKGDL---KNMNPDGKGRVRLDYVIPSRGLIGFRSEFMTMTSGTGLLYST 468 (607)
T ss_pred ECCEEeCCeEEEEEEechhhHHHHHHHHHhcCCEE---eccEECCCCEEEEEEEcCHHHHhhHHHHhhhhCCCeEEEEEE
Confidence 9999999999999999 999999999999999 9999 37999999999999999999999999999999999
Q ss_pred ecceeecc-CCCCCccceeEEEccCcchhhhhhcCccccccccccCCCcccCceEEeecCCCCCceeecccccccccccc
Q 006068 526 FLKYEKHR-GLLGNVRKGVLVSMGFGSITAHALMSLEPRGILFVPPGTETYDGMIIGEHSRDTDLDVNPVRAKELSNVRA 604 (662)
Q Consensus 526 f~~y~~~~-g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~ 604 (662)
|+||+|++ |++++|.||+|||+++|++|+|||++||+||+|||+||++||+|||||||+|+|||+|||||+||||||||
T Consensus 469 f~~Y~~~~~g~~~~~~~g~~~~~~~g~~~~~~l~~~~~rg~~f~~~~~~vy~gmivg~~~~~~d~~vn~~~~k~~tn~r~ 548 (607)
T PRK10218 469 FSHYDDVRPGEVGQRQNGVLISNGQGKAVAFALFGLQDRGKLFLGHGAEVYEGQIIGIHSRSNDLTVNCLTGKKLTNMRA 548 (607)
T ss_pred ecCccCCCCCCCCCccceEEEECCCCcCHHHhhhhhhhccceeecCCCcEecceEEeeecCcCCceeccccccccccccc
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeeCCCcccCHHHHHccccCCeeEEecCCceEeeeccCChhhhhhhhcCCC
Q 006068 605 AGKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRKRYLDVNKRKTMSKRPK 661 (662)
Q Consensus 605 ~~~~~~~~~~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~~~~~~~~~~~~~~~ 661 (662)
+|+||+|+|+|||.||||+|||||+|||||||||++|||||++|++++|||++|+-|
T Consensus 549 ~~~~~~~~l~~~~~~~le~~~~~~~~de~~evtp~~~r~rk~~l~~~~r~~~~~~~~ 605 (607)
T PRK10218 549 SGTDEAVVLVPPIRMTLEQALEFIDDDELVEVTPTSIRIRKRHLTENDRRRANRAPK 605 (607)
T ss_pred cCCCcceeecCCccCCHHHHHhhccCCeEEEECchHeEEeehhCCHhHHHHhhhccc
Confidence 999999999999999999999999999999999999999999999999999877644
No 4
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.9e-100 Score=809.85 Aligned_cols=547 Identities=36% Similarity=0.434 Sum_probs=505.4
Q ss_pred CCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCC---CCccccccccccccccceeEeeeEEEEEecC---eeEEEEeCCC
Q 006068 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGAD---IPHERAMDSISLERERGITIASKVTGISWRE---NELNMVDTPG 128 (662)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~---~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~---~~iniIDTPG 128 (662)
.+.+++||++||+|+|||||||+++||..+|.. ..++.++|+.+.|+||||||.+..+++.|++ +.+|+|||||
T Consensus 55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG 134 (650)
T KOG0462|consen 55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG 134 (650)
T ss_pred CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence 345789999999999999999999999999943 3567899999999999999999999999998 9999999999
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
|.||.+||+|.+.+||||||||||.+|+++||...+..|.+.|+.+|.|+||+|++.+++ +++.+++.++|.....
T Consensus 135 HvDFs~EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adp---e~V~~q~~~lF~~~~~- 210 (650)
T KOG0462|consen 135 HVDFSGEVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADP---ERVENQLFELFDIPPA- 210 (650)
T ss_pred cccccceehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCCCH---HHHHHHHHHHhcCCcc-
Confidence 999999999999999999999999999999999999999999999999999999999999 4466777777643322
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeece
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~ 288 (662)
+++++||++|+ |+.++|++|++++|+|....++||++++|+.++|.|.|+|+++||..|.
T Consensus 211 ------~~i~vSAK~G~--------------~v~~lL~AII~rVPpP~~~~d~plr~Lifds~yD~y~G~I~~vrv~~G~ 270 (650)
T KOG0462|consen 211 ------EVIYVSAKTGL--------------NVEELLEAIIRRVPPPKGIRDAPLRMLIFDSEYDEYRGVIALVRVVDGV 270 (650)
T ss_pred ------ceEEEEeccCc--------------cHHHHHHHHHhhCCCCCCCCCcchHHHhhhhhhhhhcceEEEEEEeeee
Confidence 48999999999 9999999999999999999999999999999999999999999999999
Q ss_pred eccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcC-cCCCccCceeeecCCCCCCCCCcCCCC
Q 006068 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG-MTKPSIGHTVANTEVTTALPTIELDPP 367 (662)
Q Consensus 289 l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~g-l~~~~~GdTl~~~~~~~~l~~~~~~~P 367 (662)
+++||.|.....++ ....+.-+++.++.-...++...++|+||+..+ ++++.+||||++.....+++.++-.+|
T Consensus 271 vrkGdkV~~~~t~~-----~yev~~vgvm~p~~~~~~~l~agqvGyIi~~mr~~~ea~IGdTi~~~~~~~~v~tl~~~~~ 345 (650)
T KOG0462|consen 271 VRKGDKVQSAATGK-----SYEVKVVGVMRPEMTPVVELDAGQVGYIICNMRNVKEAQIGDTIAHKSVTKAVETLPGFEP 345 (650)
T ss_pred eecCCEEEEeecCc-----ceEeEEeEEeccCceeeeeecccccceeEecccccccccccceeeecccCcccCcCCCCCC
Confidence 99999999987643 256778888888888888888889999998877 889999999999886667778888889
Q ss_pred eeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec----CCCeEEEEecChhhHHHHHHHHHhc-CeEEE
Q 006068 368 TISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG----MAETYEVQGRGELQLGILIENMRRE-GFELS 442 (662)
Q Consensus 368 ~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~----~~~~~~v~G~GeLhL~vl~e~Lrre-g~ev~ 442 (662)
+.+|.| ++..|+.|++ ...+.+++.|+..+|.++.+..+ .++.|+|+|+|.|||+|++|||+|| |+|+.
T Consensus 346 ~~pMvF-vg~fP~dgsd-----~~~l~~a~erL~lnd~sv~v~~~~s~aLg~gwr~gflG~LHm~Vf~erle~Eyg~eli 419 (650)
T KOG0462|consen 346 TKPMVF-VGLFPLDGSD-----YETLRDAIERLVLNDESVTVIKESSGALGQGWRLGFLGLLHMEVFIERLEREYGAELI 419 (650)
T ss_pred CcceEE-eccccCccch-----hhhHHHHHHHHhcccccceeeecCCcccccceEeeccceeeHHHHHHHHHHhcCceee
Confidence 999999 9999999875 35667777778889999999875 5678999999999999999999998 99999
Q ss_pred EeCCEEEEEE--ecC------------------eeeecceeEEEEE----chhHHHHhhccceEEEeecccc---CCEEE
Q 006068 443 VSPPKVMYKT--ENG------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---GWLWK 495 (662)
Q Consensus 443 vs~P~V~yrE--~~g------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~---~~~~~ 495 (662)
+++|+|+||- .+| ..+||+++++|.+ +|.||+.|+.|||++ .+|. +.++.
T Consensus 420 vt~PtV~Yr~~~~~~~~~~i~np~~fp~~~~v~~~lEP~v~~tii~P~Ey~G~Vi~Lc~~rRgeq---~dm~~i~~nr~~ 496 (650)
T KOG0462|consen 420 VTPPTVPYRVVYSNGDEILISNPALFPDPSDVKEFLEPYVEATIITPDEYVGAVIELCSERRGEQ---KDMTYIDGNRVM 496 (650)
T ss_pred ecCCcceEEEEecCCceeeecChhhCCCcccchhhcCceEEEEEECcHHHHHHHHHHHHHhhhhe---ecceeccCCeEE
Confidence 9999999997 233 2589999999999 999999999999999 9998 57999
Q ss_pred EEEEeccccccc-hhhhccccceeeEEeeeeecceeeccCCCCCccceeEEEccCcchhhhhhcCccccccccccCCCcc
Q 006068 496 LSLTGKLRGLVG-YRSVFSSDTRGTGFMHRAFLKYEKHRGLLGNVRKGVLVSMGFGSITAHALMSLEPRGILFVPPGTET 574 (662)
Q Consensus 496 i~~~vP~~~l~g-~~~~l~s~T~G~g~~~~~f~~y~~~~g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 574 (662)
|++.+|+|||.| |...|+|+|+|+|+|+.+|++|+ ++++-+..-+++.++.+|.+|.+.+..+++||.+||.++-+.
T Consensus 497 lky~lPl~elv~df~~~lks~tsGyAs~dye~~gY~--~sdLvkldil~n~~~vd~l~tivh~~~a~~rGr~~v~klk~~ 574 (650)
T KOG0462|consen 497 LKYQLPLRELVGDFFDRLKSLTSGYASFDYEDAGYQ--ASDLVKLDILLNGKMVDGLSTIVHLSKAESRGREFVQKLKDL 574 (650)
T ss_pred EEEecChHHHHHHHHHHHhccccceeEEeecccccc--cccceEEEeeccchhhhhHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 999999999998 99999999999999999999999 789999999999999999999999999999999999999999
Q ss_pred cCceEEeecCCCCCceeeccccccccccccCCCCceeeeCCCcccCHHHHHccccCCeeEEecCCceEeee
Q 006068 575 YDGMIIGEHSRDTDLDVNPVRAKELSNVRAAGKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRK 645 (662)
Q Consensus 575 y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk 645 (662)
|+||++|.|.++-|..-|++|++-. +..+|...+|-+|...+++.+|+|..+|++.++||.+||++|
T Consensus 575 ip~Q~~ev~iqa~igsk~iare~i~----a~rKdv~akl~ggdv~r~~klL~~q~egkk~mk~vgnI~ipk 641 (650)
T KOG0462|consen 575 IPRQIFEVHIQACIGSKNIARETIS----AYRKDVLAKLYGGDVTRLKKLLKKQAEGKKRMKTVGNIRIPK 641 (650)
T ss_pred cchhhhhhhhhhhcccchhhHHHHH----HhccceeeEecCCchhhHHHHHHhhhcCceeeeccccEecCH
Confidence 9999999999999999999999877 899999999999999999999999999999999999999998
No 5
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.7e-85 Score=738.43 Aligned_cols=444 Identities=33% Similarity=0.470 Sum_probs=396.2
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC------ccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCC
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP------HERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGH 129 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~------~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh 129 (662)
.+++|||+|+||+|||||||+++||+.+|.... ..++||+.++|++|||||.++.+++.|++ ++|||||||||
T Consensus 7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 568999999999999999999999999996432 25699999999999999999999999996 99999999999
Q ss_pred ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh-----
Q 006068 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN----- 204 (662)
Q Consensus 130 ~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~----- 204 (662)
.||..+++++|+.+|+||+||||.+|+++||+.+|++|.++++|+|+|+||||+..+++....+ ++.+.|..
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~---~l~~~l~~~~~~v 163 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVE---QLKERLGANPVPV 163 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECccccccChhhhHH---HHHHHhCCCceee
Confidence 9999999999999999999999999999999999999999999999999999999988754322 22111110
Q ss_pred ---cCCC------------------------------------------------------------Cc-----------
Q 006068 205 ---LGAT------------------------------------------------------------DE----------- 210 (662)
Q Consensus 205 ---~g~~------------------------------------------------------------~~----------- 210 (662)
.|.. .+
T Consensus 164 ~~pIg~~~~f~g~idl~~~~~~~~~~~~~~~~~~ip~~~~~~~~e~r~~~~e~i~e~de~l~e~yl~g~e~~~~~i~~~i 243 (697)
T COG0480 164 QLPIGAEEEFEGVIDLVEMKAVAFGDGAKYEWIEIPADLKEIAEEAREKLLEALAEFDEELMEKYLEGEEPTEEEIKKAL 243 (697)
T ss_pred eccccCccccCceeEhhhcCeEEEcCCcccceeeCCHHHHhHHHHHHHHHHHHHhhcCHHHHHHHhcCCCccHHHHHHHH
Confidence 0000 00
Q ss_pred ------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC--------------------CCCCCce
Q 006068 211 ------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA--------------------SLDAPFQ 264 (662)
Q Consensus 211 ------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~--------------------~~~~p~~ 264 (662)
...+|+++.||..+. |++.||+++++++|+|.. +.++||.
T Consensus 244 ~~~~~~~~~~pvl~gsa~kn~--------------gv~~lLdav~~~lPsP~e~~~~~g~~~~~~~~~~~~~~~~e~p~~ 309 (697)
T COG0480 244 RKGTIAGKIVPVLCGSAFKNK--------------GVQPLLDAVVDYLPSPLDVPPIKGDLDDEIEKAVLRKASDEGPLS 309 (697)
T ss_pred HHhhhccceeeEEeeecccCC--------------cHHHHHHHHHHHCCChhhcccccccCCccccchhcccCCCCCceE
Confidence 002566666666664 999999999999999932 3479999
Q ss_pred eEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCC
Q 006068 265 MLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP 344 (662)
Q Consensus 265 ~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~ 344 (662)
++|||+.++++.|+++|+|||||+|++|+.|++...+ +++||.+|+.++|.++++++++.||||+++.|++++
T Consensus 310 a~vfKi~~d~~~g~l~~~RvysGtl~~G~~v~n~~~~-------~~erv~~l~~~~~~~~~~v~~~~AG~I~a~~Gl~~~ 382 (697)
T COG0480 310 ALVFKIMTDPFVGKLTFVRVYSGTLKSGSEVLNSTKG-------KKERVGRLLLMHGNEREEVDEVPAGDIVALVGLKDA 382 (697)
T ss_pred EEEEEeEecCCCCeEEEEEEeccEEcCCCEEEeCCCC-------ccEEEEEEEEccCCceeecccccCccEEEEEccccc
Confidence 9999999999999999999999999999999988532 679999999999999999999999999999999999
Q ss_pred ccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecC
Q 006068 345 SIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRG 423 (662)
Q Consensus 345 ~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~G 423 (662)
.+|||+|+...+..++++.+|+|++++++.|++. .|..||.++|.+++++||+++++.+ ++++++|+|||
T Consensus 383 ~tGdTl~~~~~~v~~~~~~~pePVi~vavepk~~---------~d~~Kl~~aL~~l~~eDPt~~v~~d~Etge~iIsGmG 453 (697)
T COG0480 383 TTGDTLCDENKPVILESMEFPEPVISVAVEPKTK---------ADQEKLSEALNKLAEEDPTFRVETDEETGETIISGMG 453 (697)
T ss_pred ccCCeeecCCCccccccccCCCceEEEEEeECCh---------hhHHHHHHHHHHHHhhCCceEEEEcCCcccEEEEecc
Confidence 9999999888668899999999999999999875 6889999999999999999999997 88889999999
Q ss_pred hhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-ec--------------C--------------------------------
Q 006068 424 ELQLGILIENMRRE-GFELSVSPPKVMYKT-EN--------------G-------------------------------- 455 (662)
Q Consensus 424 eLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~--------------g-------------------------------- 455 (662)
||||+|++++|+|+ |+|+.+++|+|+||| +. |
T Consensus 454 ELHLei~~drl~~~~~Vev~~~~PqV~YrETi~~~~~~~~~~~kqsgg~~q~~~v~i~~EP~~~~~~~~f~~~i~~g~~P 533 (697)
T COG0480 454 ELHLEIIVDRLKREFGVEVEVGKPQVAYRETIRKKSEVEGKHKKQSGGPGQYGHVYIEIEPLEDGSGFEFVDKIVGGVVP 533 (697)
T ss_pred hhhHHHHHHHHHhhcCceEEecCCeeEEEEeecccccceeeeeeccCCCCcccEEEEEEEeCCCCcceEEEeecccCcCc
Confidence 99999999999987 999999999999999 32 1
Q ss_pred ----------------------------------------------------------------eeeecceeEEEEE---
Q 006068 456 ----------------------------------------------------------------VKLEPIEEVTIEL--- 468 (662)
Q Consensus 456 ----------------------------------------------------------------~~~EP~~~~~i~v--- 468 (662)
.+||||++|+|.+
T Consensus 534 ~~yi~~ve~G~~~a~~~GpLag~pv~dvkv~L~dgs~h~vdss~~af~~a~~~a~~~a~~~a~P~lLEPi~~veI~~P~d 613 (697)
T COG0480 534 KEYIPAVEKGFREALKSGPLAGYPVVDVKVTLLDGSYHEVDSSEMAFKIAASLAFKEAMLKAKPVLLEPIMKVEITTPEE 613 (697)
T ss_pred hhhhHHHHHHHHHHHhcCCCCCCceEeeEEEEEcCccccCCCCHHHHHHHHHHHHHHHHhhCCceEecceEEEEEEcchh
Confidence 2899999999999
Q ss_pred -chhHHHHhhccceEEEeecccc---C-CEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCC
Q 006068 469 -LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (662)
Q Consensus 469 -~g~v~~~l~~Rrg~i~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (662)
+|+||++|++|||+| ++|+ + ++..|+|.+|++||+||+++|||+|+|+|.|++.|+||+++|..+
T Consensus 614 ~~G~V~~~l~~rRG~I---~~~~~~~~~~~~~i~A~vPl~Emfgya~dLRs~T~Gra~~~m~f~~y~~vp~~~ 683 (697)
T COG0480 614 YMGDVIGDLNSRRGQI---LGMEQRPGGGLDVIKAEVPLAEMFGYATDLRSATQGRASFSMEFDHYEEVPSSV 683 (697)
T ss_pred hhchhHHhhhhcceEE---eceeeccCCceEEEEEEechHHhccchhhhHhhcCCceeEEEEecccEeCCHHH
Confidence 999999999999999 9999 3 679999999999999999999999999999999999999998554
No 6
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.7e-84 Score=689.40 Aligned_cols=446 Identities=30% Similarity=0.430 Sum_probs=397.8
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
+.+++|||+|++|.|+|||||.+++|+..|... ...++||+.+.|++|||||.+..+.+.|+++++||||||||
T Consensus 35 ~~~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGH 114 (721)
T KOG0465|consen 35 PLNKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGH 114 (721)
T ss_pred chhhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCc
Confidence 345799999999999999999999999988421 22689999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHH-------------
Q 006068 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVES------------- 196 (662)
Q Consensus 130 ~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~------------- 196 (662)
.||.-||+|+|+..||||+|+|+..|++.||..+|+++.++++|.|.|+||||+.++++.+......
T Consensus 115 vDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiP 194 (721)
T KOG0465|consen 115 VDFTFEVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIP 194 (721)
T ss_pred eeEEEEehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEcc
Confidence 9999999999999999999999999999999999999999999999999999999999865432111
Q ss_pred --------HHHHHHHhc-----CC-----------------------------------------CCc------------
Q 006068 197 --------LVFDLFANL-----GA-----------------------------------------TDE------------ 210 (662)
Q Consensus 197 --------~v~~l~~~~-----g~-----------------------------------------~~~------------ 210 (662)
.+.|++... |- .++
T Consensus 195 ig~e~~f~GvvDlv~~kai~~~g~~g~~i~~~eIP~~l~~~~~e~R~~LIE~lad~DE~l~e~fLee~~ps~~~l~~aIR 274 (721)
T KOG0465|consen 195 IGSESNFKGVVDLVNGKAIYWDGENGEIVRKDEIPEDLEELAEEKRQALIETLADVDETLAEMFLEEEEPSAQQLKAAIR 274 (721)
T ss_pred ccccccchhHHhhhhceEEEEcCCCCceeEeccCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhccCCCCHHHHHHHHH
Confidence 122222100 00 000
Q ss_pred -----CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC--------------------CCCC-Cce
Q 006068 211 -----QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA--------------------SLDA-PFQ 264 (662)
Q Consensus 211 -----~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~--------------------~~~~-p~~ 264 (662)
...+||+++||..+. |+++|||++++|+|+|.. ..++ ||.
T Consensus 275 r~Ti~r~fvPVl~GSAlKNk--------------GVQPlLDAVvdYLPsP~Ev~n~a~~ke~~~~ekv~l~~~~d~~Pfv 340 (721)
T KOG0465|consen 275 RATIKRSFVPVLCGSALKNK--------------GVQPLLDAVVDYLPSPSEVENYALNKETNSKEKVTLSPSRDKDPFV 340 (721)
T ss_pred HHHhhcceeeEEechhhccc--------------CcchHHHHHHHhCCChhhhcccccccCCCCccceEeccCCCCCcee
Confidence 012799999999998 999999999999999942 1233 999
Q ss_pred eEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCC
Q 006068 265 MLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP 344 (662)
Q Consensus 265 ~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~ 344 (662)
++.||+..++| |.+.|.|||+|+|++||.|++.+.+ ++.|+.+|..++....++|+++.|||||++.|+ ++
T Consensus 341 ~LAFKle~g~f-GqLTyvRvYqG~L~kG~~iyN~rtg-------KKvrv~RL~rmHa~~medV~~v~AG~I~alfGi-dc 411 (721)
T KOG0465|consen 341 ALAFKLEEGRF-GQLTYVRVYQGTLSKGDTIYNVRTG-------KKVRVGRLVRMHANDMEDVNEVLAGDICALFGI-DC 411 (721)
T ss_pred eeEEEeeecCc-cceEEEEEeeeeecCCcEEEecCCC-------ceeEhHHHhHhcccccchhhhhhccceeeeecc-cc
Confidence 99999999999 9999999999999999999998643 789999999999999999999999999999999 88
Q ss_pred ccCceeeec-CCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEec
Q 006068 345 SIGHTVANT-EVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGR 422 (662)
Q Consensus 345 ~~GdTl~~~-~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~ 422 (662)
.+|||+++. .....+..+.+|+|+++++++|++. .|.+++.++|.+...|||++++..+ +.++++|+||
T Consensus 412 asGDTftd~~~~~~~m~si~vPePVis~aikP~~k---------~d~~~fskaL~rf~~EDPtFrv~~d~E~kqTvIsGM 482 (721)
T KOG0465|consen 412 ASGDTFTDKQNLALSMESIHIPEPVISVAIKPVNK---------KDADNFSKALNRFTKEDPTFRVSLDPEMKQTVISGM 482 (721)
T ss_pred ccCceeccCccccceeeeeecCCCeeEEEeccccc---------ccHHHHHHHHHhhcccCCceEEEeccccccchhhcc
Confidence 999999998 5567788999999999999999875 5788999999999999999999998 7788999999
Q ss_pred ChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-ecC---------------------------------------------
Q 006068 423 GELQLGILIENMRRE-GFELSVSPPKVMYKT-ENG--------------------------------------------- 455 (662)
Q Consensus 423 GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~g--------------------------------------------- 455 (662)
|||||+|..|||+|| |+++.+++|+|.||| +..
T Consensus 483 GELHLEIy~eRl~rEy~~~~~~Gkp~VayRETi~~~~~f~~~hKkqSgG~gqy~kv~g~~epl~~~~~~~~eF~~~~~g~ 562 (721)
T KOG0465|consen 483 GELHLEIYVERLVREYKVDAELGKPQVAYRETITSPVEFDYTHKKQSGGAGQYGKVEGVIEPLPPGSNEKFEFSDEIVGG 562 (721)
T ss_pred chhhHHHHHHHHHHHhCCccccCCceeeehhhcCCcccceeeeccccCCCccccceeeEEeecCCCCCceEEEEecccCC
Confidence 999999999999998 999999999999999 321
Q ss_pred -------------------------------------------------------------------eeeecceeEEEEE
Q 006068 456 -------------------------------------------------------------------VKLEPIEEVTIEL 468 (662)
Q Consensus 456 -------------------------------------------------------------------~~~EP~~~~~i~v 468 (662)
.+|||||.|+|.+
T Consensus 563 ~~P~~f~pa~ekg~~e~~~~G~L~ghpl~~~r~~l~Dga~h~vds~elaf~~at~~a~r~a~~~a~p~iLEPIM~Vevt~ 642 (721)
T KOG0465|consen 563 NVPKQFIPAVEKGFEEIVAKGPLIGHPLSNLRIVLQDGAHHPVDSSELAFMKATRNAFREAFKRAPPRILEPIMNVEVTT 642 (721)
T ss_pred CCchhHHHHHHHHHHHHHhcCCccCCcccceEEEEecCCcCcccccHHHHHHHHHHHHHHHHHhCCcceeecceeeEEec
Confidence 2799999999999
Q ss_pred ----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCC
Q 006068 469 ----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (662)
Q Consensus 469 ----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (662)
+|.|+++|++|+|.| .+.+ +++..|.|++|+++|+||.++|||+|+|+|-|+|+|++|+|++.+.
T Consensus 643 P~EfqG~Vi~~L~kR~a~I---~~~d~~~~~~ti~A~VPL~~mfgYss~LRslTqGkgeftMEys~y~p~~~~v 713 (721)
T KOG0465|consen 643 PEEFQGTVIGDLNKRKAQI---TGIDSSEDYKTIKAEVPLNEMFGYSSELRSLTQGKGEFTMEYSRYSPVPPDV 713 (721)
T ss_pred chhhhhhhhhhhhhcccEE---ecccCCCceEEEEecccHHHHhhhhhhhhhhhcCcceEEEeecccCCCchHH
Confidence 999999999999999 9988 5899999999999999999999999999999999999999998654
No 7
>PRK00007 elongation factor G; Reviewed
Probab=100.00 E-value=4.6e-78 Score=699.26 Aligned_cols=448 Identities=31% Similarity=0.434 Sum_probs=396.2
Q ss_pred CCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCC
Q 006068 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (662)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTP 127 (662)
.+..+++|||+|+||+|||||||+++|++.+|... ..++++|+.+.|++||+|+++....+.|++++++|+|||
T Consensus 4 ~~~~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTP 83 (693)
T PRK00007 4 ETPLERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTP 83 (693)
T ss_pred cCcccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCC
Confidence 34567899999999999999999999999887532 235899999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhc--
Q 006068 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL-- 205 (662)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~-- 205 (662)
||.||..++.++++.+|++|+||||.+|++.||+.+|.++.+.++|+|+|+||+|+.+++... +.+++.+.+...
T Consensus 84 G~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~~~~~---~~~~i~~~l~~~~~ 160 (693)
T PRK00007 84 GHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGADFYR---VVEQIKDRLGANPV 160 (693)
T ss_pred CcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCCCHHH---HHHHHHHHhCCCee
Confidence 999999999999999999999999999999999999999999999999999999998766532 222222111100
Q ss_pred -------------------------------C--------------------------------------CCCc------
Q 006068 206 -------------------------------G--------------------------------------ATDE------ 210 (662)
Q Consensus 206 -------------------------------g--------------------------------------~~~~------ 210 (662)
+ +...
T Consensus 161 ~~~ipisa~~~f~g~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~l~~~~ 240 (693)
T PRK00007 161 PIQLPIGAEDDFKGVVDLVKMKAIIWNEADLGATFEYEEIPADLKDKAEEYREKLIEAAAEADEELMEKYLEGEELTEEE 240 (693)
T ss_pred eEEecCccCCcceEEEEcceeeeeecccCCCCCcceEccCCHHHHHHHHHHHHHHHHHHHccCHHHHHHHhCcCCCCHHH
Confidence 0 0000
Q ss_pred -----------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC--------------------CC
Q 006068 211 -----------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA--------------------SL 259 (662)
Q Consensus 211 -----------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~--------------------~~ 259 (662)
...+|++++||.++. |++.||++|++++|+|.. ++
T Consensus 241 l~~~l~~~~~~~~~~Pv~~gSa~~~~--------------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 306 (693)
T PRK00007 241 IKAALRKATIANEIVPVLCGSAFKNK--------------GVQPLLDAVVDYLPSPLDVPAIKGILPDGEEEEVERKASD 306 (693)
T ss_pred HHHHHHHHHhcCcEEEEEecccccCc--------------CHHHHHHHHHHHCCChhhcccccccCCCccccceeecCCC
Confidence 013789999999888 999999999999999852 34
Q ss_pred CCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc
Q 006068 260 DAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (662)
Q Consensus 260 ~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~ 339 (662)
++||.++|||+.++++.|+++|+|||||+|++||.|++...+ +.++|.+|+.+.|.++.+++++.|||||+|.
T Consensus 307 ~~~l~a~VfK~~~d~~~G~ia~~RV~sGtl~~g~~v~~~~~~-------~~eki~~l~~~~g~~~~~v~~~~aGdI~~i~ 379 (693)
T PRK00007 307 DEPFSALAFKIMTDPFVGKLTFFRVYSGVLESGSYVLNSTKG-------KKERIGRILQMHANKREEIKEVRAGDIAAAV 379 (693)
T ss_pred CCCeEEEEEEeeecCCCCcEEEEEEeeeEEcCCCEEEeCCCC-------ceeEeceeEEeccCCcccccccCCCcEEEEe
Confidence 679999999999999999999999999999999999876422 4679999999999999999999999999999
Q ss_pred CcCCCccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEE
Q 006068 340 GMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYE 418 (662)
Q Consensus 340 gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~ 418 (662)
|++++.+||||++.+.+..++++.+++|++++++.|.+. .+..||.++|.++.++||+|+|..+ ++++++
T Consensus 380 gl~~~~~GdtL~~~~~~~~l~~~~~~~Pv~~~aIep~~~---------~d~~kL~~aL~~L~~eDpsl~v~~~~etge~~ 450 (693)
T PRK00007 380 GLKDTTTGDTLCDEKNPIILESMEFPEPVISVAVEPKTK---------ADQEKMGIALQKLAEEDPSFRVSTDEETGQTI 450 (693)
T ss_pred CCccCCcCCEeeCCCCccccCCCCCCCceEEEEEEECCc---------ccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEE
Confidence 999999999999887777788889999999999999875 5779999999999999999999986 678899
Q ss_pred EEecChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-e------cC-----------------------------------
Q 006068 419 VQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-E------NG----------------------------------- 455 (662)
Q Consensus 419 v~G~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~------~g----------------------------------- 455 (662)
|+|+|||||+|++++|+++ |+|+.+++|+|+||| + .+
T Consensus 451 l~g~GelHLei~~~rL~~~~~vev~~s~p~V~yrETi~~~~~~~~~~~~~~gg~~~~~~v~l~~eP~~~~~~~~f~~~i~ 530 (693)
T PRK00007 451 IAGMGELHLDIIVDRMKREFKVEANVGKPQVAYRETIRKKVEVEGKFVKQSGGRGQYGHVVIEFEPNEPGKGYEFVNKIV 530 (693)
T ss_pred EEEecHHhHHHHHHHHHHHhCCeeEecCCEEEEeecccCccccCcccccccCCCCceEEEEEEEEeCCCCCCcEEeeccc
Confidence 9999999999999999886 999999999999999 2 00
Q ss_pred ---------------------------------------------------------------------eeeecceeEEE
Q 006068 456 ---------------------------------------------------------------------VKLEPIEEVTI 466 (662)
Q Consensus 456 ---------------------------------------------------------------------~~~EP~~~~~i 466 (662)
+++|||++++|
T Consensus 531 ~g~~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~~~~ds~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI 610 (693)
T PRK00007 531 GGVIPKEYIPAVDKGIQEAMESGVLAGYPVVDVKVTLFDGSYHDVDSSEMAFKIAGSMAFKEAAKKANPVLLEPIMKVEV 610 (693)
T ss_pred CCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEecccCCCCCcHHHHHHHHHHHHHHHHHHCCCEEecCcEEEEE
Confidence 36899999999
Q ss_pred EE----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCCC
Q 006068 467 EL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLLG 537 (662)
Q Consensus 467 ~v----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~~ 537 (662)
.| +|+||++|++|||++ .+|+ ++++.|+|.+|++|++||.++||++|+|+|+|++.|+||++++++..
T Consensus 611 ~~p~~~~g~v~~~L~~RRg~i---~~~~~~~~~~~i~a~vP~~e~~g~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~~ 684 (693)
T PRK00007 611 VTPEEYMGDVIGDLNSRRGQI---EGMEDRGGAKVIRAEVPLSEMFGYATDLRSMTQGRATYSMEFDHYEEVPKNVA 684 (693)
T ss_pred EechhhhhhHHHHHHhCCCeE---ecccccCCcEEEEEEcCHHHhhccHHHHHhhcCCceEEEEEeceeeECCHHHH
Confidence 99 999999999999999 9988 57899999999999999999999999999999999999999997653
No 8
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=100.00 E-value=1.3e-77 Score=680.39 Aligned_cols=430 Identities=30% Similarity=0.421 Sum_probs=383.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC---CccccccccccccccceeEeeeEEEEEec--C---eeEEEEeCCCCc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI---PHERAMDSISLERERGITIASKVTGISWR--E---NELNMVDTPGHA 130 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~---~~iniIDTPGh~ 130 (662)
++|||+|+||+|||||||+++|++.+|... ..++++|+.++|+++|+|+.++...+.|+ + +.++|||||||.
T Consensus 2 ~iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 2 NIRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 589999999999999999999999987533 34688999999999999999999999885 3 789999999999
Q ss_pred cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 131 dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
+|..++.++++.||++|||+|+.+|++.||...|..+...++|+|+|+||+|+.+++.. ++.+++.+. ++...
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~~~---~~~~el~~~---lg~~~- 154 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSADPE---RVKKEIEEV---IGLDA- 154 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccCHH---HHHHHHHHH---hCCCc-
Confidence 99999999999999999999999999999999999888899999999999999765542 233444333 23321
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceec
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVS 290 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~ 290 (662)
.+++++||++|. |+++||++|.+.+|+|..++++||+++||++++++|.|++++|||++|+|+
T Consensus 155 ---~~vi~vSAktG~--------------GI~~Lle~I~~~lp~p~~~~~~pl~~~V~~~~~d~~~G~v~~~rV~sG~lk 217 (595)
T TIGR01393 155 ---SEAILASAKTGI--------------GIEEILEAIVKRVPPPKGDPDAPLKALIFDSHYDNYRGVVALVRVFEGTIK 217 (595)
T ss_pred ---ceEEEeeccCCC--------------CHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEEeCCCcEEEEEEEECCEEe
Confidence 248999999999 999999999999999998899999999999999999999999999999999
Q ss_pred cCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc-C---cCCCccCceeeecCCC--CCCCCCcC
Q 006068 291 VGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-G---MTKPSIGHTVANTEVT--TALPTIEL 364 (662)
Q Consensus 291 ~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~~GdTl~~~~~~--~~l~~~~~ 364 (662)
+||.|.+.+.+ ...+|.+|+.+.+.. .+++++.||||+.+. | ++++.+|||||+.+++ .++|++++
T Consensus 218 ~Gd~v~~~~~~-------~~~~v~~i~~~~~~~-~~v~~~~aGdIg~i~~~~~~~~~~~~Gdtl~~~~~~~~~~l~~~~~ 289 (595)
T TIGR01393 218 PGDKIRFMSTG-------KEYEVDEVGVFTPKL-TKTDELSAGEVGYIIAGIKDVSDVRVGDTITHVKNPAKEPLPGFKE 289 (595)
T ss_pred cCCEEEEecCC-------CeeEEeEEEEecCCc-eECCEEcCCCEEEEeccccccCccCCCCEEECCCCccccCCCCCcC
Confidence 99999998643 467899999776655 899999999998774 4 5678999999998876 48999999
Q ss_pred CCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEecCC----CeEEEEecChhhHHHHHHHHHhc-Ce
Q 006068 365 DPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMA----ETYEVQGRGELQLGILIENMRRE-GF 439 (662)
Q Consensus 365 ~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~----~~~~v~G~GeLhL~vl~e~Lrre-g~ 439 (662)
++|+++..+.|.++ .|.++|.++|.|+.++||+|+++++++ ..|+++|+|+|||+|++|||+|| |+
T Consensus 290 ~~P~v~~~i~p~~~---------~d~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~g~lG~lHlei~~erL~re~~~ 360 (595)
T TIGR01393 290 VKPMVFAGLYPIDT---------EDYEDLRDALEKLKLNDASLTYEPESSPALGFGFRCGFLGLLHMEIIQERLEREFNL 360 (595)
T ss_pred CCcEEEEEEEECCc---------ccHHHHHHHHHHHhccCCeEEEEecCCcccccccEEeeeeHHHHHHHHHHHHHHhCC
Confidence 99999999999875 588999999999999999999998643 35788889999999999999987 99
Q ss_pred EEEEeCCEEEEEE--ecCe------------------eeecceeEEEEE----chhHHHHhhccceEEEeecccc--C-C
Q 006068 440 ELSVSPPKVMYKT--ENGV------------------KLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-W 492 (662)
Q Consensus 440 ev~vs~P~V~yrE--~~g~------------------~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~-~ 492 (662)
|+.+++|+|+||| .+|+ ++|||++++|.+ +|+||++|++|||++ ++|+ + +
T Consensus 361 ~v~~~~P~V~Yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~---~~~~~~~~~ 437 (595)
T TIGR01393 361 DLITTAPSVIYRVYLTNGEVIEVDNPSDLPDPGKIEHVEEPYVKATIITPTEYLGPIMTLCQEKRGVQ---TNMEYLDPN 437 (595)
T ss_pred eeEEecCEEEEEEEecCCcEEEEECcccCCCcccccceeCCeEEEEEEccHHHHHHHHHHHHHcCCEE---eCcEEcCCC
Confidence 9999999999999 3455 899999999999 999999999999999 9999 4 6
Q ss_pred EEEEEEEeccccc-cchhhhccccceeeEEeeeeecceeec
Q 006068 493 LWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (662)
Q Consensus 493 ~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (662)
++.|+|.+|++|+ ++|.++|+|+|+|+|+|+++|+||++.
T Consensus 438 ~~~i~~~~Plae~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 478 (595)
T TIGR01393 438 RVELIYEMPLAEIVYDFFDKLKSISRGYASFDYELIGYRPS 478 (595)
T ss_pred eEEEEEEeccchhhhchhHHhhhhcCCEEEEEEEECCcccc
Confidence 9999999999997 999999999999999999999999983
No 9
>PRK05433 GTP-binding protein LepA; Provisional
Probab=100.00 E-value=1e-77 Score=681.70 Aligned_cols=432 Identities=30% Similarity=0.441 Sum_probs=385.9
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC---CccccccccccccccceeEeeeEEEEEec-----CeeEEEEeCCC
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI---PHERAMDSISLERERGITIASKVTGISWR-----ENELNMVDTPG 128 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~~~~v~D~~~~E~ergiTi~~~~~~~~~~-----~~~iniIDTPG 128 (662)
.+++|||+|+||+|||||||+++|++.+|... ...+++|+.++|++||+|+.+....+.|+ ++.++||||||
T Consensus 4 ~~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 4 MKNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 45799999999999999999999999988532 24689999999999999999999999886 68999999999
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
|.||..++.++++.+|++|||||+.+|++.||...|..+...++|+|+|+||+|+.+++.. ++.+++.+. ++..
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~~~---~v~~ei~~~---lg~~ 157 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPE---RVKQEIEDV---IGID 157 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCcccHH---HHHHHHHHH---hCCC
Confidence 9999999999999999999999999999999999999999999999999999999765542 233444333 2332
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeece
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~ 288 (662)
. .+++++||++|+ |+++|+++|.+.+|+|..+.++||+++||++++++|.|++++|||++|+
T Consensus 158 ~----~~vi~iSAktG~--------------GI~~Ll~~I~~~lp~P~~~~~~pl~~~Vfd~~~d~~~G~v~~~rV~sG~ 219 (600)
T PRK05433 158 A----SDAVLVSAKTGI--------------GIEEVLEAIVERIPPPKGDPDAPLKALIFDSWYDNYRGVVVLVRVVDGT 219 (600)
T ss_pred c----ceEEEEecCCCC--------------CHHHHHHHHHHhCccccCCCCCCceEEEEEEEecCCCceEEEEEEEcCE
Confidence 1 238999999999 9999999999999999988999999999999999999999999999999
Q ss_pred eccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc-C---cCCCccCceeeecCCC--CCCCCC
Q 006068 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-G---MTKPSIGHTVANTEVT--TALPTI 362 (662)
Q Consensus 289 l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~~GdTl~~~~~~--~~l~~~ 362 (662)
|++||.|++.+.+ ...+|.+|+.+.+ ++.+++++.||||+++. | ++++++|||||+.+++ .++|++
T Consensus 220 Lk~Gd~i~~~~~~-------~~~~V~~i~~~~~-~~~~v~~~~aGdIg~i~~~ik~~~~~~~Gdtl~~~~~~~~~~l~~~ 291 (600)
T PRK05433 220 LKKGDKIKMMSTG-------KEYEVDEVGVFTP-KMVPVDELSAGEVGYIIAGIKDVRDARVGDTITLAKNPAEEPLPGF 291 (600)
T ss_pred EecCCEEEEecCC-------ceEEEEEeeccCC-CceECcEEcCCCEEEEecccccccccCCCCEEECCCCccccCCCCC
Confidence 9999999998743 4678999986655 88999999999998774 4 4678999999998876 489999
Q ss_pred cCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEecCCC----eEEEEecChhhHHHHHHHHHhc-
Q 006068 363 ELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAE----TYEVQGRGELQLGILIENMRRE- 437 (662)
Q Consensus 363 ~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~----~~~v~G~GeLhL~vl~e~Lrre- 437 (662)
++++|++++.+.|.++ .+..+|.++|.|++++||+|++++++++ .|.+++||+|||+|++|||+||
T Consensus 292 ~~~~P~v~~~i~p~~~---------~d~~kL~~aL~kL~~eD~sl~~~~e~~~~l~~g~r~gf~G~lHlev~~erL~~e~ 362 (600)
T PRK05433 292 KEVKPMVFAGLYPVDS---------DDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLEREF 362 (600)
T ss_pred CCCCcEEEEEEEECCc---------cCHHHHHHHHHHHHHhCCeEEEEecCCcceecceEeecHHHHHHHHHHHHHHHhh
Confidence 9999999999999775 5779999999999999999999965443 3566669999999999999987
Q ss_pred CeEEEEeCCEEEEEE--ecC------------------eeeecceeEEEEE----chhHHHHhhccceEEEeecccc--C
Q 006068 438 GFELSVSPPKVMYKT--ENG------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G 491 (662)
Q Consensus 438 g~ev~vs~P~V~yrE--~~g------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~ 491 (662)
|+++.+++|+|+||| .+| .++|||++++|.+ +|+||++|++|||++ ++|+ +
T Consensus 363 ~~~v~~~~P~V~Yreti~~g~~~~~~~p~~~pds~~~~~llEP~~~~~i~~P~~~~G~vm~~~~~rRG~~---~~~~~~~ 439 (600)
T PRK05433 363 DLDLITTAPSVVYEVTLTDGEVIEVDNPSKLPDPGKIEEIEEPIVKATIIVPQEYVGAVMELCQEKRGVQ---KDMEYLG 439 (600)
T ss_pred CceEEEecCEEEEEEEEeCCcEEEEECcccCCCccccceEECCEEEEEEEecHHHHHHHHHHHHHcCCEE---eCcEecC
Confidence 999999999999999 345 6899999999999 999999999999999 9999 5
Q ss_pred CEEEEEEEeccccc-cchhhhccccceeeEEeeeeecceeec
Q 006068 492 WLWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (662)
Q Consensus 492 ~~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (662)
+++.|+|.+|++|| ++|.++|+|+|+|+|+|+++|+||++.
T Consensus 440 ~~~~i~~~~Pl~e~~~~~~~~Lks~T~G~gs~~~~~~~Y~~~ 481 (600)
T PRK05433 440 NRVELTYELPLAEIVFDFFDRLKSVSRGYASLDYEFIGYRES 481 (600)
T ss_pred CeEEEEEEechHHhhhhHHHHhHhhcCCEEEEEEEECCcccc
Confidence 79999999999999 999999999999999999999999985
No 10
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=100.00 E-value=6.8e-77 Score=690.27 Aligned_cols=449 Identities=32% Similarity=0.469 Sum_probs=397.2
Q ss_pred CCCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeC
Q 006068 53 STLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDT 126 (662)
Q Consensus 53 ~~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDT 126 (662)
.....+++|||+|+||+|||||||+++|++.+|... ..++++|+.+.|++||+|+++....+.|++++++||||
T Consensus 3 ~~~~~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDT 82 (689)
T TIGR00484 3 RTTDLNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDT 82 (689)
T ss_pred CcCccccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEEC
Confidence 345567899999999999999999999999887531 13489999999999999999999999999999999999
Q ss_pred CCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh--
Q 006068 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN-- 204 (662)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~-- 204 (662)
|||.+|..++.++++.+|++|+|||+.+|+..|+..+|+.+...++|+++|+||+|+.+++.... .+++.+.+..
T Consensus 83 PG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~~~~~~---~~~i~~~l~~~~ 159 (689)
T TIGR00484 83 PGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGANFLRV---VNQIKQRLGANA 159 (689)
T ss_pred CCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCCCHHHH---HHHHHHHhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999987665332 2222221110
Q ss_pred ---------------------------------------------------------------------c--C--CCCc-
Q 006068 205 ---------------------------------------------------------------------L--G--ATDE- 210 (662)
Q Consensus 205 ---------------------------------------------------------------------~--g--~~~~- 210 (662)
+ | .+.+
T Consensus 160 ~~~~ipis~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yle~~~~~~~~ 239 (689)
T TIGR00484 160 VPIQLPIGAEDNFIGVIDLVEMKAYFFNGDKGTKAIEKEIPSDLLEQAKELRENLVEAVAEFDEELMEKYLEGEELTIEE 239 (689)
T ss_pred eeEEeccccCCCceEEEECccceEEecccCCCceeeeccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHH
Confidence 0 0 0000
Q ss_pred -----------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC-------------------CCC
Q 006068 211 -----------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA-------------------SLD 260 (662)
Q Consensus 211 -----------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~-------------------~~~ 260 (662)
..-+|++++||.++. |++.||++|++++|+|.. +++
T Consensus 240 l~~~l~~~~~~~~~~PV~~gSa~~~~--------------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~ 305 (689)
T TIGR00484 240 IKNAIRKGVLNCEFFPVLCGSAFKNK--------------GVQLLLDAVVDYLPSPTDVPAIKGIDPDTEKEIERKASDD 305 (689)
T ss_pred HHHHHHHHHhcCCEEEEEeccccCCc--------------cHHHHHHHHHHHCCCchhcccccccCCCCCceeeecCCCC
Confidence 112789999999988 999999999999999852 346
Q ss_pred CCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcC
Q 006068 261 APFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAG 340 (662)
Q Consensus 261 ~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~g 340 (662)
+||.++|||+.++++.|+++++|||||+|+.||.|++...+ ..++|.+|+.+.|.++.+++++.|||||+|.|
T Consensus 306 ~~l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~-------~~~~i~~l~~~~g~~~~~v~~~~aGdI~~i~g 378 (689)
T TIGR00484 306 EPFSALAFKVATDPFVGQLTFVRVYSGVLKSGSYVKNSRKN-------KKERVGRLVKMHANNREEIKEVRAGDICAAIG 378 (689)
T ss_pred CceEEEEEEeeecCCCCeEEEEEEEEeEEcCCCEEEeCCCC-------ceEEecceEEeecCCcccccccCCCCEEEEcC
Confidence 79999999999999999999999999999999999986432 46789999999999999999999999999999
Q ss_pred cCCCccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEE
Q 006068 341 MTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEV 419 (662)
Q Consensus 341 l~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v 419 (662)
++++.+||||++.+.+..++++.+++|++++++.|+++ .+..||.++|.++.++||+|+|..+ ++++++|
T Consensus 379 l~~~~~gdtl~~~~~~~~~~~~~~~~Pvl~~~i~p~~~---------~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il 449 (689)
T TIGR00484 379 LKDTTTGDTLCDPKIDVILERMEFPEPVISLAVEPKTK---------ADQEKMGIALGKLAEEDPTFRTFTDPETGQTII 449 (689)
T ss_pred CCCCCCCCEEeCCCCccccCCCCCCCceEEEEEEECCc---------ccHHHHHHHHHHHHHhCCEEEEEECCCCCCEEE
Confidence 99999999999888777888889999999999999876 5779999999999999999999886 7788999
Q ss_pred EecChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-ec------C------------------------------------
Q 006068 420 QGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-EN------G------------------------------------ 455 (662)
Q Consensus 420 ~G~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~------g------------------------------------ 455 (662)
+|+|||||+|++++|+++ |+|+.+++|+|+||| +. +
T Consensus 450 ~g~GelHLei~~~~L~~~~~vev~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~eP~~~~g~~~~~~i~~g 529 (689)
T TIGR00484 450 AGMGELHLDIIVDRMKREFKVEANVGAPQVAYRETIRSKVEVEGKHAKQSGGRGQYGHVKIRFEPLEPKGYEFVNEIKGG 529 (689)
T ss_pred EEeeHHHHHHHHHHHHHHhCCeeEecCCEEEEeecccCccccccccccccCCCCceEEEEEEEEECCCCCcEEEEeccCC
Confidence 999999999999999986 999999999999999 20 0
Q ss_pred -------------------------------------------------------------------eeeecceeEEEEE
Q 006068 456 -------------------------------------------------------------------VKLEPIEEVTIEL 468 (662)
Q Consensus 456 -------------------------------------------------------------------~~~EP~~~~~i~v 468 (662)
.++|||++++|.|
T Consensus 530 ~~~~~~~~av~~g~~~a~~~GpL~g~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~ 609 (689)
T TIGR00484 530 VIPREYIPAVDKGLQEAMESGPLAGYPVVDIKATLFDGSYHDVDSSEMAFKLAASLAFKEAGKKANPVLLEPIMKVEVEV 609 (689)
T ss_pred cCCHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeecCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecCcEEEEEEe
Confidence 2689999999999
Q ss_pred ----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCCC
Q 006068 469 ----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLLG 537 (662)
Q Consensus 469 ----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~~ 537 (662)
+|+|+++|++|||+| .+|+ +++++|+|.+|++|++||+++||++|+|+|+|++.|+||+++|++..
T Consensus 610 p~~~~g~v~~~L~~rrg~i---~~~~~~~~~~~I~a~vP~~e~~g~~~~Lrs~T~G~~~~~~~f~~y~~v~~~~~ 681 (689)
T TIGR00484 610 PEEYMGDVMGDLSSRRGII---EGMEARGNVQKIKAEVPLSEMFGYATDLRSFTQGRGTYSMEFLHYGEVPSSVA 681 (689)
T ss_pred cHHHhHhHHHHHHhcCCeE---ecccccCCcEEEEEEeCHHHHhChHHHHHHhcCCceEEEEEeccceeCCHHHH
Confidence 999999999999999 9998 57899999999999999999999999999999999999999997653
No 11
>PRK12739 elongation factor G; Reviewed
Probab=100.00 E-value=1.1e-76 Score=688.19 Aligned_cols=447 Identities=31% Similarity=0.441 Sum_probs=396.6
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
..+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+++....+.|++++++|||||||
T Consensus 4 ~~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~ 83 (691)
T PRK12739 4 PLEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGH 83 (691)
T ss_pred CccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCH
Confidence 456799999999999999999999999887432 23589999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh-----
Q 006068 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN----- 204 (662)
Q Consensus 130 ~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~----- 204 (662)
.+|..++.++++.+|++|+|||+.+|++.||+.+|..+...++|+|+++||+|+.+++... +.+++.+.+..
T Consensus 84 ~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~~~~~~---~~~~i~~~l~~~~~~~ 160 (691)
T PRK12739 84 VDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIGADFFR---SVEQIKDRLGANAVPI 160 (691)
T ss_pred HHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH---HHHHHHHHhCCCceeE
Confidence 9999999999999999999999999999999999999999999999999999998765432 22333222210
Q ss_pred -----------------------c------------------------------------------------CCCCc---
Q 006068 205 -----------------------L------------------------------------------------GATDE--- 210 (662)
Q Consensus 205 -----------------------~------------------------------------------------g~~~~--- 210 (662)
+ ..+.+
T Consensus 161 ~iPis~~~~f~g~vd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~v~e~dd~lle~yl~~~~~~~~~l~ 240 (691)
T PRK12739 161 QLPIGAEDDFKGVIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGEEITEEEIK 240 (691)
T ss_pred EecccccccceEEEEcchhhhhhccCCCCCCeeEEcCCCHHHHHHHHHHHHHHHHhhhhcCHHHHHHHhccCCCCHHHHH
Confidence 0 00000
Q ss_pred ---------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC-------------------CCCCC
Q 006068 211 ---------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA-------------------SLDAP 262 (662)
Q Consensus 211 ---------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~-------------------~~~~p 262 (662)
..-+|++++||.++. |++.||++|++++|+|.. ++++|
T Consensus 241 ~~l~~~~~~~~~~Pv~~gSa~~~~--------------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~p 306 (691)
T PRK12739 241 AAIRKATINMEFFPVLCGSAFKNK--------------GVQPLLDAVVDYLPSPLDVPAIKGINPDTEEEIERPASDDEP 306 (691)
T ss_pred HHHHHHHHcCCEEEEEeccccCCc--------------cHHHHHHHHHHHCCChhhccccccccCCCCcceeeccCCCCC
Confidence 012689999999998 999999999999999852 45789
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~ 342 (662)
|.++|||+.++++.|+++|+|||||+|++||.|++...+ +.++|.+|+.+.|.++.+++++.||||++|.|++
T Consensus 307 l~a~VfK~~~d~~~G~i~~~RV~sGtL~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~ 379 (691)
T PRK12739 307 FAALAFKIMTDPFVGRLTFFRVYSGVLESGSYVLNTTKG-------KKERIGRLLQMHANKREEIKEVYAGDIAAAVGLK 379 (691)
T ss_pred eEEEEEEeeeCCCCCeEEEEEEeeeEEcCCCEEEeCCCC-------ceEEecceEEEecCCcccccccCCCCEEEEeCCC
Confidence 999999999999999999999999999999999876432 4679999999999999999999999999999999
Q ss_pred CCccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEe
Q 006068 343 KPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQG 421 (662)
Q Consensus 343 ~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G 421 (662)
++.+|||||+.+.+..++++.+++|++.++++|.+. .|..+|.++|.++.++||+|+|..+ ++++++|+|
T Consensus 380 ~~~~gdtl~~~~~~~~l~~~~~~~Pv~~~aiep~~~---------~d~~kL~~aL~~L~~eDpsl~v~~~~etge~il~g 450 (691)
T PRK12739 380 DTTTGDTLCDEKAPIILESMEFPEPVISLAVEPKTK---------ADQDKMGLALQKLAEEDPTFRVETDEETGQTIISG 450 (691)
T ss_pred cccCCCEEeCCCCccccCCCCCCCceEEEEEEECCc---------ccHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEE
Confidence 999999999887777888899999999999999875 5889999999999999999999986 788899999
Q ss_pred cChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-ec--------------C------------------------------
Q 006068 422 RGELQLGILIENMRRE-GFELSVSPPKVMYKT-EN--------------G------------------------------ 455 (662)
Q Consensus 422 ~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~--------------g------------------------------ 455 (662)
+|||||+|++++|+++ |+++.+++|+|+||| +. |
T Consensus 451 ~GelHLei~~~rL~~~f~vev~~s~p~V~yrEti~~~~~~~~~~~~~s~g~~~~~~v~l~~~P~~~~~~~~~~~~i~~g~ 530 (691)
T PRK12739 451 MGELHLDIIVDRMKREFKVEANVGAPQVAYRETITKSVEAEGKYKKQSGGRGQYGDVWIEFEPNEEGKGFEFVNKIVGGV 530 (691)
T ss_pred ecHHHHHHHHHHHHHHhCCeeEecCCEEEEeeccCCcccccceeccccCCCCceeEEEEEEEECCCCCCcEEEEeccCCc
Confidence 9999999999999886 999999999999999 21 0
Q ss_pred ------------------------------------------------------------------eeeecceeEEEEE-
Q 006068 456 ------------------------------------------------------------------VKLEPIEEVTIEL- 468 (662)
Q Consensus 456 ------------------------------------------------------------------~~~EP~~~~~i~v- 468 (662)
+++|||++++|.|
T Consensus 531 ~~~~~~~av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~s~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~~eI~~p 610 (691)
T PRK12739 531 IPKEYIPAVEKGLEEAMKNGVLAGYPMVDVKATLYDGSYHDVDSSELAFKIAASMALKEAAKKAGPVILEPIMKVEVVTP 610 (691)
T ss_pred CcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEEc
Confidence 2689999999999
Q ss_pred ---chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCCCC
Q 006068 469 ---LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLLGN 538 (662)
Q Consensus 469 ---~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~~~ 538 (662)
+|+||++|++|||++ ++++ ++++.|+|.+|++|++||.++||++|+|+|+|++.|+||++++++...
T Consensus 611 ~~~~g~v~~~L~~RRg~i---~~~~~~~~~~~i~a~vP~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~v~~~~~~ 682 (691)
T PRK12739 611 EEYMGDVIGDLNRRRGQI---QGMEARGGAQIVKAFVPLSEMFGYATDLRSATQGRATFSMEFDHYEEVPKNIAE 682 (691)
T ss_pred hHhhhhHHHHHHhcCCeE---ECccccCCcEEEEEEeCHHHhhccHHHHHhhccCceEEEEEeccceECCHHHHH
Confidence 999999999999999 9988 578899999999999999999999999999999999999999976643
No 12
>PRK07560 elongation factor EF-2; Reviewed
Probab=100.00 E-value=1.9e-75 Score=681.01 Aligned_cols=461 Identities=30% Similarity=0.442 Sum_probs=392.4
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----CccccccccccccccceeEeeeEEEEEe----cCeeEEEEeCCC
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISW----RENELNMVDTPG 128 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~E~ergiTi~~~~~~~~~----~~~~iniIDTPG 128 (662)
.+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+.+...++.| +++.+|||||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 45799999999999999999999999988643 2357899999999999999999998887 478999999999
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCH--------HHHHHHHHHHHH
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE--------ERCDEVESLVFD 200 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~--------~~~~ei~~~v~~ 200 (662)
|.||..++.++++.+|++|+|||+.+|++.||+.+|+.+.+.++|+|+|+||+|+..+++ .++.++.+++..
T Consensus 97 ~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~ 176 (731)
T PRK07560 97 HVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNK 176 (731)
T ss_pred ccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999976543 123333444444
Q ss_pred HHHhcCCCC-------cCCCccEEEcccccCccCCccC--CCC-C-------CCc----------cchHHHHHHHHhhCC
Q 006068 201 LFANLGATD-------EQLDFPVLYASAKEGWASSTFT--KDP-P-------ADV----------RNMSQLLDAIIRHVP 253 (662)
Q Consensus 201 l~~~~g~~~-------~~~~~Pvi~~SA~~g~~~~~~~--~~~-~-------~~~----------~gv~~Lld~I~~~lP 253 (662)
++..+.... ...+-.++++||..+|+...-. ... . +.. .=++.|||+|++++|
T Consensus 177 ~l~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~~~~~~~l~e~~~~~~~~~l~~~~Pv~~~Lld~I~~~lP 256 (731)
T PRK07560 177 LIKGMAPEEFKEKWKVDVEDGTVAFGSALYNWAISVPMMQKTGIKFKDIIDYYEKGKQKELAEKAPLHEVVLDMVVKHLP 256 (731)
T ss_pred HHHHhhhhhhhcceeecCCCCcEeeeecccccceeHHHHHHhCCCHHHHHHHHhcCCHHHHHhhccchhHHHHHHHHhCC
Confidence 443321110 0112347889999998543100 000 0 000 001379999999999
Q ss_pred CCCC-------------------------CCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcce
Q 006068 254 PPKA-------------------------SLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKI 308 (662)
Q Consensus 254 ~p~~-------------------------~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~ 308 (662)
+|.. ++++||.++|||+.++++.|+++++|||||+|++||.|++.+.+
T Consensus 257 sP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~~a~VfK~~~d~~~G~va~~RV~sGtL~~Gd~v~~~~~~------- 329 (731)
T PRK07560 257 NPIEAQKYRIPKIWKGDLNSEVGKAMLNCDPNGPLVMMVTDIIVDPHAGEVATGRVFSGTLRKGQEVYLVGAK------- 329 (731)
T ss_pred ChhhhhhhcccccccCCCCccccceeeccCCCCCEEEEEEeeEEcCCCCeEEEEEEEEeEEcCCCEEEEcCCC-------
Confidence 9952 34679999999999999999999999999999999999998643
Q ss_pred EEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCCCCCCC-cCCCCeeeeeeeecCCCCCCCCCcc
Q 006068 309 EEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTI-ELDPPTISMTFGVNDSPLAGRDGTH 387 (662)
Q Consensus 309 ~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~-~~~~P~~~~~~~~~~sp~~~~~~~~ 387 (662)
.+++|.+|+.+.|.+..++++|.|||||+|.|++++.+||||++.....+++++ .+|+|+++++|.|.+.
T Consensus 330 ~~~~v~~i~~~~g~~~~~v~~a~AGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~p~Pv~~~aI~p~~~--------- 400 (731)
T PRK07560 330 KKNRVQQVGIYMGPEREEVEEIPAGNIAAVTGLKDARAGETVVSVEDMTPFESLKHISEPVVTVAIEAKNP--------- 400 (731)
T ss_pred CceEeheehhhhcCCCceeeeECCCCEEEEEcccccccCCEEeCCCccccccccccCCCCeEEEEEEECCH---------
Confidence 457899999999999999999999999999999999999999988776777776 4899999999999865
Q ss_pred cchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-----ec------
Q 006068 388 LTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-----EN------ 454 (662)
Q Consensus 388 ~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-----~~------ 454 (662)
.|..||.++|.++.++||+|+|..+ ++++++|+|+|||||+|++++|+++ |+++.+++|+|+||| ..
T Consensus 401 ~d~~kL~~aL~~L~~eDPsl~v~~~~etge~~l~g~GElHLei~~~rL~~~~~vev~~~~p~V~yrETI~~~~~~~~~~~ 480 (731)
T PRK07560 401 KDLPKLIEVLRQLAKEDPTLVVKINEETGEHLLSGMGELHLEVITYRIKRDYGIEVVTSEPIVVYRETVRGKSQVVEGKS 480 (731)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEEcCCCCCeEEEcCCHHHHHHHHHHHHHHhCCceEecCCEEEEEEecccCccceEEEC
Confidence 6889999999999999999999987 7788999999999999999999765 999999999999999 10
Q ss_pred -------------------------------------------------------------C------------------
Q 006068 455 -------------------------------------------------------------G------------------ 455 (662)
Q Consensus 455 -------------------------------------------------------------g------------------ 455 (662)
|
T Consensus 481 ~~~~~~v~l~iePl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~i~~~~~~~~f~~~~~gg~~~~~~~~ 560 (731)
T PRK07560 481 PNKHNRFYISVEPLEEEVIEAIKEGEISEDMDKKEAKILREKLIEAGMDKDEAKRVWAIYNGNVFIDMTKGIQYLNEVME 560 (731)
T ss_pred CCCceEEEEEEEECCHHHHHHHhcCCcccccchHHHHHHHHhhhhcCCchhhhhceeeccCCeEEEECCCCccCHHHHHH
Confidence 1
Q ss_pred -------------------------------------------------------------eeeecceeEEEEE----ch
Q 006068 456 -------------------------------------------------------------VKLEPIEEVTIEL----LS 470 (662)
Q Consensus 456 -------------------------------------------------------------~~~EP~~~~~i~v----~g 470 (662)
+++|||++++|.+ +|
T Consensus 561 av~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~d~~~~~~~~~~~a~~~a~~~a~~~a~p~LlEPi~~veI~~p~~~~g 640 (731)
T PRK07560 561 LIIEGFREAMKEGPLAAEPVRGVKVRLHDAKLHEDAIHRGPAQVIPAVRNAIFAAMLTAKPTLLEPIQKVDINVPQDYMG 640 (731)
T ss_pred HHHHHHHHHHhcCCccCCceeeEEEEEEEeeecccccccccchHHHHHHHHHHHHHHhCCCEEeecEEEEEEEecHHHhh
Confidence 2789999999999 99
Q ss_pred hHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCC
Q 006068 471 LCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (662)
Q Consensus 471 ~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (662)
+|+++|++|||+| .+|+ +++.+|+|.+|+++++||+++||++|+|+|+|++.|+||+++++++
T Consensus 641 ~v~~~L~~rrg~i---~~~~~~~~~~~I~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~v~~~~ 705 (731)
T PRK07560 641 AVTREIQGRRGKI---LDMEQEGDMAIIEAEAPVAEMFGFAGEIRSATEGRALWSTEFAGFEPVPDSL 705 (731)
T ss_pred HHHHHHHhcCCee---eeeecCCCcEEEEEEEehHHhcCCchHHHhhCcCCceEEEEeccceeCCHHH
Confidence 9999999999999 9998 5789999999999999999999999999999999999999998754
No 13
>PRK13351 elongation factor G; Reviewed
Probab=100.00 E-value=2.4e-74 Score=670.30 Aligned_cols=445 Identities=30% Similarity=0.442 Sum_probs=393.6
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
..+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|+++|+|+......+.|++++++|||||||
T Consensus 4 ~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~ 83 (687)
T PRK13351 4 PLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPGH 83 (687)
T ss_pred ccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCCc
Confidence 456799999999999999999999999877422 23578999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh-----
Q 006068 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN----- 204 (662)
Q Consensus 130 ~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~----- 204 (662)
.||..++..+++.+|++|+|+|+.+++..++..+|..+...++|+++|+||+|+.+++... ..+++.+.+..
T Consensus 84 ~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~~---~~~~i~~~l~~~~~~~ 160 (687)
T PRK13351 84 IDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVGADLFK---VLEDIEERFGKRPLPL 160 (687)
T ss_pred HHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCCCCHHH---HHHHHHHHHCCCeEEE
Confidence 9999999999999999999999999999999999999999999999999999998877633 22232222110
Q ss_pred -------------------------------------------------------------------c--C--CCC----
Q 006068 205 -------------------------------------------------------------------L--G--ATD---- 209 (662)
Q Consensus 205 -------------------------------------------------------------------~--g--~~~---- 209 (662)
+ + .+.
T Consensus 161 ~~P~~~~~~~~g~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~lle~~l~~~~l~~~~l~ 240 (687)
T PRK13351 161 QLPIGSEDGFEGVVDLITEPELHFSEGDGGSTVEEGPIPEELLEEVEEAREKLIEALAEFDDELLELYLEGEELSAEQLR 240 (687)
T ss_pred EeccccCCceEEEEECccceEEecccCCCCCceEEccCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCCHHHHH
Confidence 0 0 000
Q ss_pred --------cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC------------------CCCCCc
Q 006068 210 --------EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA------------------SLDAPF 263 (662)
Q Consensus 210 --------~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~------------------~~~~p~ 263 (662)
....+|++++||++|. |++.||++|++++|+|.. ++++|+
T Consensus 241 ~~~~~~~~~~~~~PV~~gSA~~~~--------------Gv~~LLd~I~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~pl 306 (687)
T PRK13351 241 APLREGTRSGHLVPVLFGSALKNI--------------GIEPLLDAVVDYLPSPLEVPPPRGSKDNGKPVKVDPDPEKPL 306 (687)
T ss_pred HHHHHHHHhCCEEEEEecccCcCc--------------cHHHHHHHHHHHCCChhhcccccccCCCCCceeecCCCCCCe
Confidence 0113899999999998 999999999999999952 457899
Q ss_pred eeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCC
Q 006068 264 QMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343 (662)
Q Consensus 264 ~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~ 343 (662)
.++|||+.++++.|+++++|||+|+|++||.|++.+.+ ..++|.+|+.+.|.++.++++|.||||+++.|+++
T Consensus 307 ~a~VfK~~~d~~~G~i~~~RV~sGtl~~g~~v~~~~~~-------~~~~i~~i~~~~g~~~~~v~~~~aGdI~~i~gl~~ 379 (687)
T PRK13351 307 LALVFKVQYDPYAGKLTYLRVYSGTLRAGSQLYNGTGG-------KREKVGRLFRLQGNKREEVDRAKAGDIVAVAGLKE 379 (687)
T ss_pred EEEEEEeeecCCCceEEEEEEeEEEEcCCCEEEeCCCC-------CceEeeeEEEEccCCeeECCccCCCCEEEEECccc
Confidence 99999999999999999999999999999999998642 46789999999999999999999999999999999
Q ss_pred CccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEec
Q 006068 344 PSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGR 422 (662)
Q Consensus 344 ~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~ 422 (662)
+.+|||||+......++++.+|+|+++++++|.+. .+..+|.++|.++.++||+|+|..+ ++++++|+|+
T Consensus 380 ~~~gdtl~~~~~~~~~~~~~~~~pv~~~~Iep~~~---------~d~~kL~~aL~~L~~eDpsl~v~~~~etge~ii~g~ 450 (687)
T PRK13351 380 LETGDTLHDSADPVLLELLTFPEPVVSLAVEPERR---------GDEQKLAEALEKLVWEDPSLRVEEDEETGQTILSGM 450 (687)
T ss_pred CccCCEEeCCCCccccCCCCCCCccEEEEEEECCc---------ccHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEe
Confidence 99999999887666777888999999999999875 5789999999999999999999987 7788999999
Q ss_pred ChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-ec----------------------------------------------
Q 006068 423 GELQLGILIENMRRE-GFELSVSPPKVMYKT-EN---------------------------------------------- 454 (662)
Q Consensus 423 GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~---------------------------------------------- 454 (662)
|||||+|++++|+++ |+|+.+++|+|+||| +.
T Consensus 451 GelHLei~~~rL~~~~~vev~~~~p~V~y~Eti~~~~~~~~~~~~~~~~~~~~~~v~~~~ep~~~~~g~~~~~~~~~~~~ 530 (687)
T PRK13351 451 GELHLEVALERLRREFKLEVNTGKPQVAYRETIRKMAEGVYRHKKQFGGKGQFGEVHLRVEPLERGAGFIFVSKVVGGAI 530 (687)
T ss_pred cHHHHHHHHHHHHHHhCCceEecCCeEEEEeeccccccccceeeeccCCCceEEEEEEEEEECCCCCCcEEeecccCCcC
Confidence 999999999999986 999999999999999 21
Q ss_pred ------------------C----------------------------------------------eeeecceeEEEEE--
Q 006068 455 ------------------G----------------------------------------------VKLEPIEEVTIEL-- 468 (662)
Q Consensus 455 ------------------g----------------------------------------------~~~EP~~~~~i~v-- 468 (662)
| +++|||++++|.|
T Consensus 531 ~~~~~~ai~~g~~~a~~~GpL~~~pv~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~ 610 (687)
T PRK13351 531 PEELIPAVEKGIREALASGPLAGYPVTDLRVTVLDGKYHPVDSSESAFKAAARKAFLEAFRKANPVLLEPIMELEITVPT 610 (687)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCCceeeEEEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhCCCeeecceEEEEEEech
Confidence 1 2689999999999
Q ss_pred --chhHHHHhhccceEEEeecccc--CCEEE-EEEEeccccccchhhhccccceeeEEeeeeecceeeccCCC
Q 006068 469 --LSLCIWYLSSLRFCFRLTRNMW--GWLWK-LSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (662)
Q Consensus 469 --~g~v~~~l~~Rrg~i~~~~~~~--~~~~~-i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (662)
+|.|+++|++|||++ ++++ ++... |+|.+|++|++||.++||++|+|+|+|++.|+||++++++.
T Consensus 611 ~~~g~v~~~l~~rrg~i---~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~a~~~~~f~~y~~v~~~~ 680 (687)
T PRK13351 611 EHVGDVLGDLSQRRGRI---EGTEPRGDGEVLVKAEAPLAELFGYATRLRSMTKGRGSFTMEFSHFDPVPPAV 680 (687)
T ss_pred HhhhhHHHHHHhCCcEE---eceecCCCcEEEEEEEECHHHhhChHHHHHhhcCCceEEEEEeccceeCCHHH
Confidence 999999999999999 9887 44444 99999999999999999999999999999999999998764
No 14
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.3e-72 Score=583.68 Aligned_cols=434 Identities=31% Similarity=0.434 Sum_probs=385.9
Q ss_pred CCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC---ccccccccccccccceeEeeeEEEEEec-----CeeEEEEeC
Q 006068 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---HERAMDSISLERERGITIASKVTGISWR-----ENELNMVDT 126 (662)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---~~~v~D~~~~E~ergiTi~~~~~~~~~~-----~~~iniIDT 126 (662)
...+++||++||+|.|||||||.++|+..+|.... .+.++|+++.|+||||||.+....+.|+ .|.+|||||
T Consensus 4 ~~~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDT 83 (603)
T COG0481 4 TPQKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDT 83 (603)
T ss_pred cchhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCC
Confidence 34568999999999999999999999999986442 3679999999999999999999999886 389999999
Q ss_pred CCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
|||.||..||.|+|..|.|+||||||..|++.||..-.-.|.+.++-+|-|+||+|++.+++++ +.+++.+. +|
T Consensus 84 PGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adper---vk~eIe~~---iG 157 (603)
T COG0481 84 PGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPER---VKQEIEDI---IG 157 (603)
T ss_pred CCccceEEEehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCHHH---HHHHHHHH---hC
Confidence 9999999999999999999999999999999999999999999999999999999999999966 44455444 34
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEee
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSS 286 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~s 286 (662)
.+... .+.+|||+|. |++++|++|++.+|+|..++++|+++++|+.++|+|.|.+++.||+.
T Consensus 158 id~~d----av~~SAKtG~--------------gI~~iLe~Iv~~iP~P~g~~~~pLkALifDS~yD~Y~GVv~~vRi~d 219 (603)
T COG0481 158 IDASD----AVLVSAKTGI--------------GIEDVLEAIVEKIPPPKGDPDAPLKALIFDSWYDNYLGVVVLVRIFD 219 (603)
T ss_pred CCcch----heeEecccCC--------------CHHHHHHHHHhhCCCCCCCCCCcceEEEEeccccccceEEEEEEEee
Confidence 43322 6899999999 99999999999999999999999999999999999999999999999
Q ss_pred ceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE-cC---cCCCccCceeeecCCC--CCCC
Q 006068 287 GVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV-AG---MTKPSIGHTVANTEVT--TALP 360 (662)
Q Consensus 287 G~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai-~g---l~~~~~GdTl~~~~~~--~~l~ 360 (662)
|++++||.|.....+ ++..|.++-.+. .+....+++.|||+.-+ +| +.++++||||+...+| .+||
T Consensus 220 G~ik~gdki~~m~tg-------~~y~V~evGvft-P~~~~~~~L~aGeVG~~~a~iK~v~d~~VGDTiT~~~~p~~e~Lp 291 (603)
T COG0481 220 GTLKKGDKIRMMSTG-------KEYEVDEVGIFT-PKMVKVDELKAGEVGYIIAGIKDVRDARVGDTITLASNPATEPLP 291 (603)
T ss_pred ceecCCCEEEEEecC-------CEEEEEEEeecc-CCccccccccCCceeEEEEeeeecccCcccceEeccCCCccccCC
Confidence 999999999999753 445566665554 46788999999999644 44 4578899999965554 6899
Q ss_pred CCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec----CCCeEEEEecChhhHHHHHHHHHh
Q 006068 361 TIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG----MAETYEVQGRGELQLGILIENMRR 436 (662)
Q Consensus 361 ~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~----~~~~~~v~G~GeLhL~vl~e~Lrr 436 (662)
+++-..|++..-+.|-++ .+.+.|+++|.|+..+|.+|.+|++ .+-.|+++.+|-|||+|+.|||+|
T Consensus 292 Gfk~~~P~Vf~GlyPid~---------~dye~LrdAleKL~LNDasl~~E~EtS~ALGfGfRcGFLGlLHmeiiqERLeR 362 (603)
T COG0481 292 GFKEVKPMVFAGLYPVDS---------DDYEDLRDALEKLQLNDASLTYEPETSQALGFGFRCGFLGLLHMEIIQERLER 362 (603)
T ss_pred CCCcCCceEEEeecccCh---------hHHHHHHHHHHhcccccceeeeccccchhccCceeehhhhHHHHHHHHHHHHH
Confidence 999888888888877765 5778999999999999999999986 455799999999999999999998
Q ss_pred c-CeEEEEeCCEEEEEE--ecC------------------eeeecceeEEEEE----chhHHHHhhccceEEEeecccc-
Q 006068 437 E-GFELSVSPPKVMYKT--ENG------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW- 490 (662)
Q Consensus 437 e-g~ev~vs~P~V~yrE--~~g------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~- 490 (662)
| ++++..+.|.|+|+- .+| ...|||.+++|.+ .|.||+.+..+||.. .+|+
T Consensus 363 Ef~ldlI~TaPsV~Y~v~~~~g~~~~i~NPs~~P~~~~I~~i~EP~v~~~ii~P~eylG~vm~Lcq~kRG~~---~~m~y 439 (603)
T COG0481 363 EFDLDLITTAPSVVYKVELTDGEEIEVDNPSDLPDPNKIEEIEEPYVKATIITPQEYLGNVMELCQEKRGIQ---IDMEY 439 (603)
T ss_pred hhCcceEecCCceEEEEEEcCCcEEEecChHhCCChhhhheeeCceeEEEEeCcHHHHHHHHHHHHHhcCce---ecceE
Confidence 7 999999999999996 344 3679999999999 999999999999999 9999
Q ss_pred -C-CEEEEEEEecccccc-chhhhccccceeeEEeeeeecceeec
Q 006068 491 -G-WLWKLSLTGKLRGLV-GYRSVFSSDTRGTGFMHRAFLKYEKH 532 (662)
Q Consensus 491 -~-~~~~i~~~vP~~~l~-g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (662)
+ .++.+.|.+|++|++ +|...|+|.|+|+++|..+|.+|++.
T Consensus 440 l~~~rv~l~Y~lPl~Eiv~DFfDkLKS~skGYAS~DYe~~~y~~~ 484 (603)
T COG0481 440 LDQNRVMLTYELPLAEIVFDFFDKLKSISKGYASFDYEFIGYRES 484 (603)
T ss_pred ecCceEEEEEecchHHHHHHHhHhhhccccceeeecccccccccc
Confidence 6 899999999999988 99999999999999999999999873
No 15
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=100.00 E-value=5.7e-72 Score=650.20 Aligned_cols=461 Identities=29% Similarity=0.432 Sum_probs=386.5
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----CccccccccccccccceeEeeeEEE----EEecCeeEEEEeCCC
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTG----ISWRENELNMVDTPG 128 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~E~ergiTi~~~~~~----~~~~~~~iniIDTPG 128 (662)
.+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+.+...+ +.|++++++||||||
T Consensus 16 ~~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG 95 (720)
T TIGR00490 16 PKFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPG 95 (720)
T ss_pred cccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCC
Confidence 35689999999999999999999999887532 2346789999999999999987665 677899999999999
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHH--------HHHHHHHHHH
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEER--------CDEVESLVFD 200 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~--------~~ei~~~v~~ 200 (662)
|.+|..++.++++.+|++|+|+|+.+|+..+|..+|+.+...++|+++|+||+|+..+++.. +......+.+
T Consensus 96 ~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (720)
T TIGR00490 96 HVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNK 175 (720)
T ss_pred ccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHh
Confidence 99999999999999999999999999999999999999999999999999999997655422 2222233334
Q ss_pred HHHhcCCC-------CcCCCccEEEcccccCccCCc--cCCC-C----------CCCccc-------hHHHHHHHHhhCC
Q 006068 201 LFANLGAT-------DEQLDFPVLYASAKEGWASST--FTKD-P----------PADVRN-------MSQLLDAIIRHVP 253 (662)
Q Consensus 201 l~~~~g~~-------~~~~~~Pvi~~SA~~g~~~~~--~~~~-~----------~~~~~g-------v~~Lld~I~~~lP 253 (662)
++....-+ ....+..+.++|++.+|++.- +... . .....+ ++.||++|++++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Pv~~~Lld~i~~~lP 255 (720)
T TIGR00490 176 LIKAMAPEEFRDKWKVRVEDGSVAFGSAYYNWAISVPSMKKTGIGFKDIYKYCKEDKQKELAKKSPLHQVVLDMVIRHLP 255 (720)
T ss_pred hhhccCCHHHhhceEechhhCCHHHHhhhhcccccchhHhhcCCCHHHHHHHHHhccHHHHhhhhhHHHHHHHHHHHhCC
Confidence 33221000 000123356777777764310 0000 0 000112 5788999999999
Q ss_pred CCCC-------------------------CCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcce
Q 006068 254 PPKA-------------------------SLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKI 308 (662)
Q Consensus 254 ~p~~-------------------------~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~ 308 (662)
+|.. ++++||.++|||+.++++.|+++++|||||+|++||.|++.+.+
T Consensus 256 sP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~G~ia~~RV~sGtL~~G~~l~~~~~~------- 328 (720)
T TIGR00490 256 SPIEAQKYRIPVIWKGDLNSEVGKAMLNCDPKGPLALMITKIVVDKHAGEVAVGRLYSGTIRPGMEVYIVDRK------- 328 (720)
T ss_pred ChhhhhhhcccccccCCCCccchhhcccCCCCCCeEEEEEEEEecCCCcEEEEEEEEeCEEcCCCEEEEcCCC-------
Confidence 9941 33679999999999999999999999999999999999998643
Q ss_pred EEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCC-CCCCCC-cCCCCeeeeeeeecCCCCCCCCCc
Q 006068 309 EEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVT-TALPTI-ELDPPTISMTFGVNDSPLAGRDGT 386 (662)
Q Consensus 309 ~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~-~~l~~~-~~~~P~~~~~~~~~~sp~~~~~~~ 386 (662)
..++|.+|+.+.|.+..++++|.|||||+|.|++++.+|||||+.+.+ .+++++ .+|+|++++++.|.+.
T Consensus 329 ~~~kv~~l~~~~g~~~~~v~~a~aGdIv~i~gl~~~~~GdtL~~~~~~~~~~~~~~~~~~Pv~~~~i~p~~~-------- 400 (720)
T TIGR00490 329 AKARIQQVGVYMGPERVEVDEIPAGNIVAVIGLKDAVAGETICTTVENITPFESIKHISEPVVTVAIEAKNT-------- 400 (720)
T ss_pred CeeEeeEEEEeccCCccCccEECCCCEEEEECccccccCceeecCCcccccCcccccCCCceEEEEEEECCH--------
Confidence 468999999999999999999999999999999999999999987644 345655 4889999999999875
Q ss_pred ccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-e----c-----
Q 006068 387 HLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-E----N----- 454 (662)
Q Consensus 387 ~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~----~----- 454 (662)
.|..+|.++|.+++++||+|+|+.+ ++++++|+|||||||+|++++|+++ |+|+.+++|+|+||| + .
T Consensus 401 -~d~~kL~~aL~~L~~eDPsl~v~~d~etge~il~g~GElHLei~~~rL~~~~~vev~~~~P~V~YrETi~~~~~~~~~~ 479 (720)
T TIGR00490 401 -KDLPKLIEVLRQVAKEDPTVHVEINEETGEHLISGMGELHLEIIVEKIREDYGLDVETSPPIVVYRETVTGTSPVVEGK 479 (720)
T ss_pred -HHHHHHHHHHHHHHhhCCeEEEEECCCCCCeEEEEccceeHHHHHHHHHHHhCCceeecCCEEEEEEeccccccceEEE
Confidence 5889999999999999999999986 7788999999999999999999886 999999999999999 1 1
Q ss_pred -----------------------------------------------------------C--------------------
Q 006068 455 -----------------------------------------------------------G-------------------- 455 (662)
Q Consensus 455 -----------------------------------------------------------g-------------------- 455 (662)
+
T Consensus 480 ~~~~~~~v~l~iePl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~f~~~~~gg~i~~~~~~a 559 (720)
T TIGR00490 480 SPNKHNRFYIVVEPLEESVIQAFKEGKIVDMKMKKKERRRLLIEAGMDSEEAARVEEYYEGNLFINMTRGIQYLDETKEL 559 (720)
T ss_pred cCCCcEEEEEEEEECCcchhhhhhcccccccccchHHHHHHHHhcCCchhhhcCEEEecCCeEEEECCCCCCCHHHHHHH
Confidence 1
Q ss_pred ------------------------------------------------------------eeeecceeEEEEE----chh
Q 006068 456 ------------------------------------------------------------VKLEPIEEVTIEL----LSL 471 (662)
Q Consensus 456 ------------------------------------------------------------~~~EP~~~~~i~v----~g~ 471 (662)
+++|||++++|.+ +|+
T Consensus 560 v~~G~~~a~~~GpL~g~pv~~v~v~l~d~~~h~~~vds~~~~f~~a~~~a~~~a~~~a~p~LlEPi~~~ei~~p~~~~g~ 639 (720)
T TIGR00490 560 ILEGFREAMRNGPIAREKCMGVKVKLMDAKLHEDAVHRGPAQVIPAVRSGIFAAMMQAKPVLLEPYQKVFINVPQDMMGA 639 (720)
T ss_pred HHHHHHHHHHcCCcCCCcccceEEEEEeeccccccccCccchHHHHHHHHHHHHHHhCCCeEecceEEEEEEccHHHHhH
Confidence 2789999999999 999
Q ss_pred HHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCC
Q 006068 472 CIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (662)
Q Consensus 472 v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (662)
|+++|++|||+| ++|+ ++.+.|+|.+|++|++||.++||++|+|+|+|++.|+||+++|+++
T Consensus 640 v~~~L~~RRg~i---~~~~~~~~~~~I~A~vP~~e~fgy~~~Lrs~T~G~a~~~~~f~~y~~vp~~~ 703 (720)
T TIGR00490 640 ATREIQNRRGQI---LEMKQEGDMVTIIAKAPVAEMFGFAGAIRGATSGRCLWSTEHAGFELVPQNL 703 (720)
T ss_pred HHHHHhhCCcee---eeeccCCCcEEEEEEEehHHhcCCcHHHHhhCCCCceEEEEecccccCCHHH
Confidence 999999999999 9998 4789999999999999999999999999999999999999998765
No 16
>PRK12740 elongation factor G; Reviewed
Probab=100.00 E-value=2.1e-71 Score=644.56 Aligned_cols=435 Identities=32% Similarity=0.456 Sum_probs=386.3
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 66 IAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 66 iGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+......+.|+++.++|||||||.+|..++.++
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~~~~~~~~~ 80 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVDFTGEVERA 80 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHHHHHHHHHH
Confidence 69999999999999999988532 234899999999999999999999999999999999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh---------------
Q 006068 140 VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--------------- 204 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~--------------- 204 (662)
++.+|++|+|+|+.++...++..+|..+...++|+++|+||+|+...+... +.+++.+.+..
T Consensus 81 l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~~~~~---~~~~l~~~l~~~~~~~~~p~~~~~~~ 157 (668)
T PRK12740 81 LRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAGADFFR---VLAQLQEKLGAPVVPLQLPIGEGDDF 157 (668)
T ss_pred HHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH---HHHHHHHHHCCCceeEEecccCCCCc
Confidence 999999999999999999999999999999999999999999998766532 22222221110
Q ss_pred -------------------------------------------c-CCCC--------------------------cCCCc
Q 006068 205 -------------------------------------------L-GATD--------------------------EQLDF 214 (662)
Q Consensus 205 -------------------------------------------~-g~~~--------------------------~~~~~ 214 (662)
+ ..++ ...-+
T Consensus 158 ~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~e~~~~~d~~~le~~l~~~~l~~~~~~~~~~~~~~~~~~~ 237 (668)
T PRK12740 158 TGVVDLLSMKAYRYDEGGPSEEIEIPAELLDRAEEAREELLEALAEFDDELMEKYLEGEELSEEEIKAGLRKATLAGEIV 237 (668)
T ss_pred eEEEECccceEEEecCCCeeEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 0 0000 01137
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC-----------------CCCCCceeEEEeeeeecccc
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA-----------------SLDAPFQMLVTMMEKDFYLG 277 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~-----------------~~~~p~~~~V~~~~~~~~~G 277 (662)
|++++||++|. |++.||++|++++|+|.. ++++|+.++|||+.++++.|
T Consensus 238 Pv~~gSA~~~~--------------Gv~~LLd~i~~~lPsp~~~~~~~~~~~~~~~~~~~~~~~~l~a~v~k~~~~~~~G 303 (668)
T PRK12740 238 PVFCGSALKNK--------------GVQRLLDAVVDYLPSPLEVPPVDGEDGEEGAELAPDPDGPLVALVFKTMDDPFVG 303 (668)
T ss_pred EEEeccccCCc--------------cHHHHHHHHHHHCCChhhcccccCCCCccccccccCCCCCeEEEEEEeeecCCCC
Confidence 99999999998 999999999999999952 55789999999999999999
Q ss_pred eEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCC
Q 006068 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTT 357 (662)
Q Consensus 278 ~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~ 357 (662)
+++++|||+|+|++||.|++.+.+ ..++|.+|+.++|.+++++++|.||||+++.|++++.+||||++...+.
T Consensus 304 ~i~~~RV~sG~L~~g~~v~~~~~~-------~~~~i~~l~~l~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl~~~~~~~ 376 (668)
T PRK12740 304 KLSLVRVYSGTLKKGDTLYNSGTG-------KKERVGRLYRMHGKQREEVDEAVAGDIVAVAKLKDAATGDTLCDKGDPI 376 (668)
T ss_pred cEEEEEEeeeEEcCCCEEEeCCCC-------CcEEecceeeecCCCccccCccCCCCEEEEeccCccCCCCEEeCCCCcc
Confidence 999999999999999999988632 4578999999999999999999999999999999999999999877777
Q ss_pred CCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHh
Q 006068 358 ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRR 436 (662)
Q Consensus 358 ~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrr 436 (662)
.++++.+++|++++++.|++. .|..+|.++|.++.++||+|+|..+ ++++++|+|+|||||+|++++|++
T Consensus 377 ~~~~~~~~~P~~~~~i~p~~~---------~d~~~L~~aL~~l~~~Dpsl~v~~~~~~ge~~l~g~GelhLei~~~~L~~ 447 (668)
T PRK12740 377 LLEPMEFPEPVISLAIEPKDK---------GDEEKLSEALGKLAEEDPTLRVERDEETGQTILSGMGELHLDVALERLKR 447 (668)
T ss_pred ccCCCCCCCcceEEEEEECCc---------chHHHHHHHHHHHHHhCCeEEEEECCCCCCEEEEEecHHHHHHHHHHHHH
Confidence 888999999999999999875 5789999999999999999999986 778899999999999999999998
Q ss_pred c-CeEEEEeCCEEEEEE-e-c-----------------------------------------------------------
Q 006068 437 E-GFELSVSPPKVMYKT-E-N----------------------------------------------------------- 454 (662)
Q Consensus 437 e-g~ev~vs~P~V~yrE-~-~----------------------------------------------------------- 454 (662)
+ |+++.+++|+|+||| + .
T Consensus 448 ~~~~~v~~~~p~V~yrEti~~~~~~~~~~~~~~~~~~~~~~v~l~~ep~~~~~~~~f~~~~~~~~~~~~~~~ai~~g~~~ 527 (668)
T PRK12740 448 EYGVEVETGPPQVPYRETIRKKAEGHGRHKKQSGGHGQFGDVWLEVEPLPRGEGFEFVDKVVGGAVPRQYIPAVEKGVRE 527 (668)
T ss_pred HhCceeEecCCeeEEeeccCCCccccceeccccCCCCceEEEEEEEEECCCCCceEEeecccCCCccHHHHHHHHHHHHH
Confidence 6 999999999999999 1 1
Q ss_pred ----C----------------------------------------------eeeecceeEEEEE----chhHHHHhhccc
Q 006068 455 ----G----------------------------------------------VKLEPIEEVTIEL----LSLCIWYLSSLR 480 (662)
Q Consensus 455 ----g----------------------------------------------~~~EP~~~~~i~v----~g~v~~~l~~Rr 480 (662)
| +++|||++++|.+ .|.|+++|++||
T Consensus 528 a~~~Gpl~g~p~~~v~v~l~~~~~~~~~s~~~~~~~a~~~a~~~a~~~a~~~LlEPi~~~eI~~p~~~~g~v~~~l~~rr 607 (668)
T PRK12740 528 ALEKGVLAGYPVVDVKVTLTDGSYHSVDSSEMAFKIAARLAFREALPKAKPVLLEPIMKVEVSVPEEFVGDVIGDLSSRR 607 (668)
T ss_pred HHhcCCcCCCceeeEEEEEEecccccCCCCHHHHHHHHHHHHHHHHHhcCCeeecceEEEEEEechhhhhhHHHHHHhCC
Confidence 2 2789999999999 999999999999
Q ss_pred eEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCC
Q 006068 481 FCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (662)
Q Consensus 481 g~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (662)
|++ .+++ ++.++|+|.+|++|++||+++||++|+|+|+|++.|+||++++++.
T Consensus 608 g~i---~~~~~~~~~~~i~a~~P~~e~~g~~~~Lr~~T~G~a~~~~~f~~y~~~~~~~ 662 (668)
T PRK12740 608 GRI---LGMESRGGGDVVRAEVPLAEMFGYATDLRSLTQGRGSFSMEFSHYEEVPGNV 662 (668)
T ss_pred CeE---eccccCCCCEEEEEEcCHHHhhchHHHHHHhcCCeEEEEEEecccccCCHHH
Confidence 999 8887 3449999999999999999999999999999999999999998754
No 17
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=100.00 E-value=1.5e-70 Score=646.67 Aligned_cols=468 Identities=27% Similarity=0.380 Sum_probs=386.0
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----CccccccccccccccceeEeeeEEEEEec---------------
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWR--------------- 117 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~E~ergiTi~~~~~~~~~~--------------- 117 (662)
++++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+.+...++.|.
T Consensus 16 ~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (843)
T PLN00116 16 KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG 95 (843)
T ss_pred ccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence 56799999999999999999999999988532 23567999999999999999999999884
Q ss_pred -CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCC----CH----
Q 006068 118 -ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV----SE---- 188 (662)
Q Consensus 118 -~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~----~~---- 188 (662)
++.+||||||||.||.+++.++++.+|++|+||||.+|++.||+.+|+++...++|+|+|+||||+... ++
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~ 175 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAY 175 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHH
Confidence 788999999999999999999999999999999999999999999999999999999999999999621 12
Q ss_pred HHHHHHHHHHHHHHHhcCCC---CcC---CCccEEEcccccCccCCc----------------------c----------
Q 006068 189 ERCDEVESLVFDLFANLGAT---DEQ---LDFPVLYASAKEGWASST----------------------F---------- 230 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g~~---~~~---~~~Pvi~~SA~~g~~~~~----------------------~---------- 230 (662)
..+..+.+++...+..++.. +.+ ..--|+++|+..||++.- |
T Consensus 176 ~~~~~vi~~in~~~~~~~~~~~~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~ 255 (843)
T PLN00116 176 QTFSRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATK 255 (843)
T ss_pred HHHHHHHHHHHHHHHhccccccCceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCc
Confidence 34455666665333332211 000 011256677766642100 0
Q ss_pred ----CC--CC------------C---------------------C------------------------CccchHHHHHH
Q 006068 231 ----TK--DP------------P---------------------A------------------------DVRNMSQLLDA 247 (662)
Q Consensus 231 ----~~--~~------------~---------------------~------------------------~~~gv~~Lld~ 247 (662)
.+ .+ . . .-.+.+.||++
T Consensus 256 ~~~~~~~~~~~~~~~f~~~il~~~~~l~e~v~~~d~~lle~~l~~~~~~l~~~el~~~~~~l~~~~~~pv~~~s~~Lld~ 335 (843)
T PLN00116 256 KWTTKNTGSPTCKRGFVQFCYEPIKQIINTCMNDQKDKLWPMLEKLGVTLKSDEKELMGKALMKRVMQTWLPASDALLEM 335 (843)
T ss_pred eEEecCCCCchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCCCCCHHHHhhhhHHHHHHHHHhhcCChHHHHHH
Confidence 00 00 0 0 00123789999
Q ss_pred HHhhCCCCCC-------------------------CCCCCceeEEEeeeeecccce-EEEEEEeeceeccCCEEEEeecc
Q 006068 248 IIRHVPPPKA-------------------------SLDAPFQMLVTMMEKDFYLGR-ILTGRVSSGVVSVGDKVHGLRIT 301 (662)
Q Consensus 248 I~~~lP~p~~-------------------------~~~~p~~~~V~~~~~~~~~G~-i~~gRV~sG~l~~Gd~V~~~~~~ 301 (662)
|++++|+|.. ++++|+.++|||+.++++.|+ ++|+|||||+|+.||.|++.+.+
T Consensus 336 i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~pl~a~VfK~~~~~~~g~~l~~~RVysGtL~~g~~v~v~~~n 415 (843)
T PLN00116 336 IIFHLPSPAKAQRYRVENLYEGPLDDKYATAIRNCDPNGPLMLYVSKMIPASDKGRFFAFGRVFSGTVATGMKVRIMGPN 415 (843)
T ss_pred HHHhCCChHHhhhHHhhhccCCCCCccccchhhcCCCCCCeEEEEEeeeecCCCCeEEEEEEEEeeeecCCCEEEEeCCC
Confidence 9999999941 235799999999999998898 99999999999999999865432
Q ss_pred CC-CC-cceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCcc-CceeeecC--CCCCCCCCcCC-CCeeeeeeee
Q 006068 302 DS-GT-EKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSI-GHTVANTE--VTTALPTIELD-PPTISMTFGV 375 (662)
Q Consensus 302 ~~-~~-~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~-GdTl~~~~--~~~~l~~~~~~-~P~~~~~~~~ 375 (662)
.. +. .....++|.+|+.+.|.++++++++.|||||+|.|+++..+ |||||+.. .+..++++.++ +|+++++++|
T Consensus 416 ~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~~~AGdI~ai~gl~~~~~~gdTL~~~~~~~~~~l~~~~~~~~Pv~~~aIeP 495 (843)
T PLN00116 416 YVPGEKKDLYVKSVQRTVIWMGKKQESVEDVPCGNTVAMVGLDQFITKNATLTNEKEVDAHPIKAMKFSVSPVVRVAVQC 495 (843)
T ss_pred CCCCCccccceeEhheEEEecCCCceECcEECCCCEEEEEeecccccCCceecCCcccCCccccccccCCCceEEEEEEE
Confidence 11 10 01223589999999999999999999999999999988655 99999876 45677888898 9999999999
Q ss_pred cCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEecCCCeEEEEecChhhHHHHHHHHHh-c--CeEEEEeCCEEEEEE
Q 006068 376 NDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRR-E--GFELSVSPPKVMYKT 452 (662)
Q Consensus 376 ~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~G~GeLhL~vl~e~Lrr-e--g~ev~vs~P~V~yrE 452 (662)
.+. .|..+|.++|.++.++||+|++...++++++|+|||||||+|++++|++ + |+|+.+++|+|+|||
T Consensus 496 ~~~---------~d~~kL~~aL~~L~~eDPsl~v~~~etge~il~g~GElHLEi~~~rL~~~f~~~vev~~s~p~V~yrE 566 (843)
T PLN00116 496 KNA---------SDLPKLVEGLKRLAKSDPMVQCTIEESGEHIIAGAGELHLEICLKDLQDDFMGGAEIKVSDPVVSFRE 566 (843)
T ss_pred CCh---------hhHHHHHHHHHHHHHhCCCeEEEEcCCCCEEEEEccHHHHHHHHHHHHHHhhCCCcEEEcCCeEEEEe
Confidence 765 5889999999999999999999766777899999999999999999985 6 999999999999999
Q ss_pred -e----------------------------c---------------------------------------------C---
Q 006068 453 -E----------------------------N---------------------------------------------G--- 455 (662)
Q Consensus 453 -~----------------------------~---------------------------------------------g--- 455 (662)
+ + |
T Consensus 567 TI~~~~~~~~~~~~~~~~~~v~l~iePl~~~~~~~ie~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~gp~~~~~~~ 646 (843)
T PLN00116 567 TVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKIRSKILAEEFGWDKDLAKKIWCFGPETTGPNM 646 (843)
T ss_pred cccccccCcEEEecCCceEEEEEEEEECCHHHHHHHHcCCcccCcchHHHHHHhhhhcCcchhhhcCeeeecCCCCCceE
Confidence 2 1 0
Q ss_pred -----------------------------------------------------------------------------eee
Q 006068 456 -----------------------------------------------------------------------------VKL 458 (662)
Q Consensus 456 -----------------------------------------------------------------------------~~~ 458 (662)
++|
T Consensus 647 ~~~~~~g~~~~~~i~~ai~~G~~~a~~~GpL~g~Pv~~V~v~l~d~~~h~d~~~~~~~~f~~A~~~a~~~Al~~a~p~Ll 726 (843)
T PLN00116 647 VVDMCKGVQYLNEIKDSVVAGFQWATKEGALAEENMRGICFEVCDVVLHADAIHRGGGQIIPTARRVIYASQLTAKPRLL 726 (843)
T ss_pred EEECCcchhhHHHHHHHHHHHHHHHHhcCCccCCeeeeEEEEEEEeeccCcccccchhhHHHHHHHHHHHHHHhCCCEEe
Confidence 178
Q ss_pred ecceeEEEEE----chhHHHHhhccceEEEeecccc---C-CEEEEEEEeccccccchhhhccccceeeEEeeeeeccee
Q 006068 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYE 530 (662)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~ 530 (662)
|||++++|.| +|+|+++|++|||+| ++++ + +.++|+|.+|++|++||+++||++|+|+|+|++.|+||+
T Consensus 727 EPi~~veI~~p~~~~G~V~~dL~~RRG~i---~~~~~~~~t~~~~I~A~vPl~e~~gy~~~LRs~T~G~g~~~~~f~~y~ 803 (843)
T PLN00116 727 EPVYLVEIQAPEQALGGIYSVLNQKRGHV---FEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWD 803 (843)
T ss_pred eceeEEEEEccHHHHhHHHHHHHhcCCcc---ceeeecCCCceEEEEEEeeHHHHcCCCHHHHhhCCCCCeEEEEeceeE
Confidence 9999999999 999999999999999 9887 3 458999999999999999999999999999999999999
Q ss_pred eccCCC
Q 006068 531 KHRGLL 536 (662)
Q Consensus 531 ~~~g~~ 536 (662)
++|++.
T Consensus 804 ~v~~dp 809 (843)
T PLN00116 804 MMSSDP 809 (843)
T ss_pred ECCCCC
Confidence 999775
No 18
>PTZ00416 elongation factor 2; Provisional
Probab=100.00 E-value=3.7e-69 Score=633.64 Aligned_cols=465 Identities=26% Similarity=0.365 Sum_probs=385.5
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----CccccccccccccccceeEeeeEEEEEec----------CeeEE
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWR----------ENELN 122 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~E~ergiTi~~~~~~~~~~----------~~~in 122 (662)
.+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+.+....+.|. ++.+|
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 46799999999999999999999999988532 22456999999999999999998888886 78899
Q ss_pred EEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC----CCCH----HHHHHH
Q 006068 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP----AVSE----ERCDEV 194 (662)
Q Consensus 123 iIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~----~~~~----~~~~ei 194 (662)
|+|||||.||..++.++++.+|+||+|||+.+|++.||+.+|+.+.+.++|+|+|+||+|+. +.++ ..+..+
T Consensus 96 liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~i 175 (836)
T PTZ00416 96 LIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKT 175 (836)
T ss_pred EEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999997 3232 234556
Q ss_pred HHHHHHHHHhcCCCC------cCCCccEEEcccccCccCCc----------------------c----CC----------
Q 006068 195 ESLVFDLFANLGATD------EQLDFPVLYASAKEGWASST----------------------F----TK---------- 232 (662)
Q Consensus 195 ~~~v~~l~~~~g~~~------~~~~~Pvi~~SA~~g~~~~~----------------------~----~~---------- 232 (662)
.+++...+..++-.. .....-+.++|+..||++.- | ++
T Consensus 176 i~~in~~l~~~~~~~~~~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~ 255 (836)
T PTZ00416 176 IENVNVIIATYNDELMGDVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDE 255 (836)
T ss_pred HHHHHHHHHhcccccccceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEecc
Confidence 666666554322100 00112245566665443210 0 00
Q ss_pred ---CCC--------------------------------CC------------cc--c------------hHHHHHHHHhh
Q 006068 233 ---DPP--------------------------------AD------------VR--N------------MSQLLDAIIRH 251 (662)
Q Consensus 233 ---~~~--------------------------------~~------------~~--g------------v~~Lld~I~~~ 251 (662)
... .. .. + ++.||++|+++
T Consensus 256 ~~~~~~~~~~~f~~~~~~~~~~l~e~~~~~dd~lle~~l~~~~~~l~~~e~~~~~~~l~~~~~~~~~Pv~~~Lld~i~~~ 335 (836)
T PTZ00416 256 TNAQGKKLKRAFCQFILDPICQLFDAVMNEDKEKYDKMLKSLNISLTGEDKELTGKPLLKAVMQKWLPAADTLLEMIVDH 335 (836)
T ss_pred CCccccccchHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCcChHHhccChHHHHHHHHHHHhchHHHHHHHHHHh
Confidence 000 00 00 0 26789999999
Q ss_pred CCCCCC-------------------------CCCCCceeEEEeeeeecccce-EEEEEEeeceeccCCEEEEeeccCCCC
Q 006068 252 VPPPKA-------------------------SLDAPFQMLVTMMEKDFYLGR-ILTGRVSSGVVSVGDKVHGLRITDSGT 305 (662)
Q Consensus 252 lP~p~~-------------------------~~~~p~~~~V~~~~~~~~~G~-i~~gRV~sG~l~~Gd~V~~~~~~~~~~ 305 (662)
+|+|.. ++++|+.++|||+.++++.|+ ++|+|||||+|+.||.|++.+.+...
T Consensus 336 lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~plva~VfK~~~~~~~g~~~s~~RV~SGtL~~g~~v~v~~~~~~~- 414 (836)
T PTZ00416 336 LPSPKEAQKYRVENLYEGPMDDEAANAIRNCDPNGPLMMYISKMVPTSDKGRFYAFGRVFSGTVATGQKVRIQGPNYVP- 414 (836)
T ss_pred CCChhHhCchhhhccccCCCCccccceeeccCCCCCeEEEEEeeeecCCCCcEEEEEEEEeeeecCCCEEEEeCCCCCC-
Confidence 999941 235689999999999999999 89999999999999999876543111
Q ss_pred cceEE-----eEEEeEEeecCCceeeecccCCCCEEEEcCcCC--CccCceeeecCCCCCCCCCcCC-CCeeeeeeeecC
Q 006068 306 EKIEE-----GKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK--PSIGHTVANTEVTTALPTIELD-PPTISMTFGVND 377 (662)
Q Consensus 306 ~~~~~-----~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~--~~~GdTl~~~~~~~~l~~~~~~-~P~~~~~~~~~~ 377 (662)
..+ .+|.+|+.+.|.+..++++|.|||||+|.|+++ +.+| |||+......++++.++ +|++.++++|.+
T Consensus 415 --~~~e~~~~~~i~~l~~~~g~~~~~v~~v~AGdI~~i~gl~~~~~~tg-TL~~~~~~~~l~~i~~~~~Pv~~vaIep~~ 491 (836)
T PTZ00416 415 --GKKEDLFEKNIQRTVLMMGRYVEQIEDVPCGNTVGLVGVDQYLVKSG-TITTSETAHNIRDMKYSVSPVVRVAVEPKN 491 (836)
T ss_pred --CCcccchheecceeEEecCCCceECcEECCCCEEEEEecccceecce-eecCCCCcccccccccCCCCeEEEEEEECC
Confidence 112 259999999999999999999999999999998 7899 99988776778888886 999999999976
Q ss_pred CCCCCCCCcccchhhHHhHhhhhhccCceEEEEecCCCeEEEEecChhhHHHHHHHHHh-c-CeEEEEeCCEEEEEE-e-
Q 006068 378 SPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRR-E-GFELSVSPPKVMYKT-E- 453 (662)
Q Consensus 378 sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~G~GeLhL~vl~e~Lrr-e-g~ev~vs~P~V~yrE-~- 453 (662)
. .|..+|.++|+++.++||+|.+...++++++|+|||||||++++++|++ + |+|+.+++|+|+||| +
T Consensus 492 ~---------~d~~kL~~aL~~L~~eDPsl~~~~~etgE~il~g~GElHLei~l~~L~~~f~~vev~~s~P~V~yrETI~ 562 (836)
T PTZ00416 492 P---------KDLPKLVEGLKRLAKSDPLVVCTTEESGEHIVAGCGELHVEICLKDLEDDYANIDIIVSDPVVSYRETVT 562 (836)
T ss_pred H---------HHHHHHHHHHHHHHhhCCceEEEEcCCCCeEEEeCcHhHHHHHHHHHHHHhcCcceEecCCEEEEEEEec
Confidence 5 5889999999999999999999766777899999999999999999986 5 999999999999999 2
Q ss_pred ---------------------------c----------------------------------------------------
Q 006068 454 ---------------------------N---------------------------------------------------- 454 (662)
Q Consensus 454 ---------------------------~---------------------------------------------------- 454 (662)
+
T Consensus 563 ~~s~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~g~nil~~ 642 (836)
T PTZ00416 563 EESSQTCLSKSPNKHNRLYMKAEPLTEELAEAIEEGKVGPEDDPKERANFLADKYEWDKNDARKIWCFGPENKGPNVLVD 642 (836)
T ss_pred ccccceEEEECCCCCeeEEEEEEECCHHHHhHhhcCccccccchhHHHhhhhcccCcchhhhhCeeeccCCCCCCcEEEe
Confidence 0
Q ss_pred ---C----------------------------------------------------------------------eeeecc
Q 006068 455 ---G----------------------------------------------------------------------VKLEPI 461 (662)
Q Consensus 455 ---g----------------------------------------------------------------------~~~EP~ 461 (662)
+ +++|||
T Consensus 643 ~~~~~~~~~~~~~av~~G~~~a~~~GpL~g~pv~dv~v~l~d~~~h~~~~~~~~~~f~~a~~~a~~~a~~~a~p~LlEPi 722 (836)
T PTZ00416 643 VTKGVQYMNEIKDSCVSAFQWATKEGVLCDENMRGIRFNILDVTLHADAIHRGAGQIIPTARRVFYACELTASPRLLEPM 722 (836)
T ss_pred cCCcccchHHHHHHHHHHHHHHHhcCcccCCcccceEEEEEEeeccccccccchHHHHHHHHHHHHHHHhhCCCEEEeee
Confidence 1 178999
Q ss_pred eeEEEEE----chhHHHHhhccceEEEeecccc--CC--EEEEEEEeccccccchhhhccccceeeEEeeeeecceeecc
Q 006068 462 EEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GW--LWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHR 533 (662)
Q Consensus 462 ~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~--~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~ 533 (662)
++++|.| +|+|+++|++|||++ ++++ ++ .++|+|.+|++|++||.++||++|+|+|.|++.|+||+++|
T Consensus 723 ~~veI~~p~~~lg~V~~dL~~RRG~i---~~~~~~~~t~~~~I~a~vP~~e~~gy~~~LRs~T~G~g~~~~~F~~y~~vp 799 (836)
T PTZ00416 723 FLVDITAPEDAMGGIYSVLNRRRGVV---IGEEQRPGTPLSNIKAYLPVAESFGFTAALRAATSGQAFPQCVFDHWQVVP 799 (836)
T ss_pred EEEEEEEcHHHHhHHHHHHHhcCCCc---cCcccCCCCCcEEEEEEEehHHhcCCCHHHHhhCcCCceEEEEeccEEECC
Confidence 9999999 999999999999999 9987 33 48999999999999999999999999999999999999999
Q ss_pred CCCC
Q 006068 534 GLLG 537 (662)
Q Consensus 534 g~~~ 537 (662)
++.-
T Consensus 800 ~dp~ 803 (836)
T PTZ00416 800 GDPL 803 (836)
T ss_pred CCCC
Confidence 8753
No 19
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2e-64 Score=516.85 Aligned_cols=445 Identities=25% Similarity=0.358 Sum_probs=379.6
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCC------CCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGAD------IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~------~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~ 130 (662)
..++|||+|++|+|+||||..+++++.+|.. ....+++|+...|++||||+.+....|+|+++++|+||||||.
T Consensus 34 ~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghv 113 (753)
T KOG0464|consen 34 IAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHV 113 (753)
T ss_pred hhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcc
Confidence 3469999999999999999999999999853 2347999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHH-HHHH------------
Q 006068 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDE-VESL------------ 197 (662)
Q Consensus 131 dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~e-i~~~------------ 197 (662)
||.-++++.++..||++.|+|+..|+++||..+|+++.++++|.++|+||||+..++++...+ +.+.
T Consensus 114 df~leverclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi 193 (753)
T KOG0464|consen 114 DFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPI 193 (753)
T ss_pred eEEEEHHHHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEecc
Confidence 999999999999999999999999999999999999999999999999999998887754222 2221
Q ss_pred ---------HHHHHHh---cC------------------------------------------------------CCCcC
Q 006068 198 ---------VFDLFAN---LG------------------------------------------------------ATDEQ 211 (662)
Q Consensus 198 ---------v~~l~~~---~g------------------------------------------------------~~~~~ 211 (662)
+.|++.+ +| .+.+.
T Consensus 194 ~eak~fnkg~ldil~ke~l~~ncnsndgkd~e~~plle~ndpel~e~~ae~knal~~qlad~~~dfad~~ldef~~n~d~ 273 (753)
T KOG0464|consen 194 GEAKGFNKGFLDILHKEKLLGNCNSNDGKDFENKPLLEKNDPELAEELAEAKNALCEQLADLDADFADKFLDEFDENFDK 273 (753)
T ss_pred cccccccchHHHHHHHhhccCCCCCCccccccCCcccccCCHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhhccccc
Confidence 1111110 00 00000
Q ss_pred -----------------CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC-------CCCCCceeEE
Q 006068 212 -----------------LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA-------SLDAPFQMLV 267 (662)
Q Consensus 212 -----------------~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~-------~~~~p~~~~V 267 (662)
...|+.++||.++. |+++|+|++.-|+|+|.. .....++++.
T Consensus 274 i~a~elksai~~lt~aq~a~~i~cgsaiknk--------------giqplldavtmylpspeernyeflqwykddlcala 339 (753)
T KOG0464|consen 274 IDAEELKSAIHELTCAQKAAPILCGSAIKNK--------------GIQPLLDAVTMYLPSPEERNYEFLQWYKDDLCALA 339 (753)
T ss_pred cCHHHHHHHHHHHhhhhhhcceehhhhhccc--------------CccchhhhhhhccCChhhcchHHHhhhhhhHHHHh
Confidence 01688899998887 999999999999999974 2346788999
Q ss_pred EeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccC
Q 006068 268 TMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIG 347 (662)
Q Consensus 268 ~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~G 347 (662)
||+.+|+..|.++|.|||+|+++.+-.|.+.+. ...+++.+++.+...+..+++++.||+|...+|++...+|
T Consensus 340 fkvlhdkqrg~l~fmriysgsi~~~~ai~nin~-------~~se~~~kl~~pfade~~~i~qlsagnialt~glk~tatg 412 (753)
T KOG0464|consen 340 FKVLHDKQRGPLSFMRIYSGSIHNNLAIFNING-------MCSEGILKLFLPFADEHREIEQLSAGNIALTAGLKHTATG 412 (753)
T ss_pred hhhhcccccCceeEEEEecccccCceeeeeccc-------ccccchHhhhccchhhhhhhhhcccccEEEEecceeeccC
Confidence 999999999999999999999999999998753 3567899999999999999999999999999999999999
Q ss_pred ceeeecC------------------------CCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhcc
Q 006068 348 HTVANTE------------------------VTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAET 403 (662)
Q Consensus 348 dTl~~~~------------------------~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~ 403 (662)
||+.++. ....+.++++|+|++...++|.+- .....+-.+|.-+..+
T Consensus 413 dtivaskasa~aa~qk~~~egekk~~q~~daerll~agie~pd~vffc~iepps~---------~k~~d~ehale~lqre 483 (753)
T KOG0464|consen 413 DTIVASKASAEAAAQKAAGEGEKKHLQNKDAERLLFAGIEIPDAVFFCCIEPPSL---------RKLNDFEHALECLQRE 483 (753)
T ss_pred CeEEecchhHHHHHHHhhccchhhccCCccccceeeecccCCCceEEEeccCccc---------ccchhHHHHHHHHhcc
Confidence 9996532 012467899999999999987542 1224556677777889
Q ss_pred CceEEEEec-CCCeEEEEecChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-e-----------cC--------------
Q 006068 404 NLAINVIPG-MAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-E-----------NG-------------- 455 (662)
Q Consensus 404 d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~-----------~g-------------- 455 (662)
||++++..+ +++++++.||||||++++-+|++|+ |+++-+++-+|.||| + +|
T Consensus 484 dpslkir~d~dsgqtil~~~gelhie~ihdrikrey~ldtfig~lqvayre~i~~~lr~t~~ld~~lgdkk~~~~velea 563 (753)
T KOG0464|consen 484 DPSLKIRFDPDSGQTILCGMGELHIEAIHDRIKREYGLDTFIGKLQVAYREMILEELRATAKLDDGLGDKKHLEFVELEA 563 (753)
T ss_pred CCceeEEecCCCCceEEeccchhhHHHHHHHHHhhcCchheehhHHHHHHHHHHHHhhhhhhhhccccccccceEEEEEe
Confidence 999999988 7778999999999999999999987 999999999999999 2 11
Q ss_pred --------------------------------------------------------------------------------
Q 006068 456 -------------------------------------------------------------------------------- 455 (662)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (662)
T Consensus 564 r~~~tqa~ip~kkiefe~~es~n~~~l~~sqeaie~g~~na~~~gpl~g~pi~~v~itl~~~~i~~gk~n~alisac~qk 643 (753)
T KOG0464|consen 564 RLEETQAHIPFKKIEFELAESANEGLLDVSQEAIEEGCHNACLNGPLAGSPIHAVAITLHECIIHGGKINPALISACAQK 643 (753)
T ss_pred eeccccccccceeEEeeccccccchhhhhHHHHHHhhHHHHHhcCCccCCchhheeEeeEEEEecCCcCCHHHHHHHHHH
Confidence
Q ss_pred -----------eeeecceeEEEEE-----chhHHHHhhccceEEEeecccc---C-CEEEEEEEeccccccchhhhcccc
Q 006068 456 -----------VKLEPIEEVTIEL-----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSD 515 (662)
Q Consensus 456 -----------~~~EP~~~~~i~v-----~g~v~~~l~~Rrg~i~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~ 515 (662)
+++||+|+++|++ ...|+.+|.+|||.+ ...+ + ...+|-+.+|++|+.||+..+|++
T Consensus 644 cvqealkkad~~l~eplm~lei~i~~dd~~qpiladl~qrr~~~---e~~~aredneirri~~~lplaei~~~s~~lrtl 720 (753)
T KOG0464|consen 644 CVQEALKKADKQLLEPLMELEIEIANDDPLQPILADLAQRRAHF---EEIDAREDNEIRRICAFLPLAEIEGLSKTLRTL 720 (753)
T ss_pred HHHHHHhhhhHHHhhhhhheEEEEecCCCccHHHHHHHHhhccc---hhcccccccchheeeEeeeHHHhhcHHHHHHHH
Confidence 2689999999999 888999999999999 7776 2 456799999999999999999999
Q ss_pred ceeeEEeeeeecceeeccC
Q 006068 516 TRGTGFMHRAFLKYEKHRG 534 (662)
Q Consensus 516 T~G~g~~~~~f~~y~~~~g 534 (662)
|+|.|.|..+|.+|+.+..
T Consensus 721 tsg~a~~ale~~~yqamn~ 739 (753)
T KOG0464|consen 721 TSGFADFALEFRGYQAMNE 739 (753)
T ss_pred hcccceEEEEecchhhcCh
Confidence 9999999999999998753
No 20
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=100.00 E-value=5.4e-61 Score=536.83 Aligned_cols=362 Identities=25% Similarity=0.361 Sum_probs=315.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTP 127 (662)
.++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+.+....+.|+++++|+||||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 5689999999999999999999999887532 123568999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh---
Q 006068 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--- 204 (662)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~--- 204 (662)
||.||..++.++++.+|++|+|||+.+|+..+|+.+|+.+...++|+++|+||+|+.++++..+ .+++.+.+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~a~~~~~---l~~i~~~l~~~~~ 164 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGREPLEL---LDEIEEVLGIACA 164 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccccCHHHH---HHHHHHHhCCCCe
Confidence 9999999999999999999999999999999999999999999999999999999988776432 2222221100
Q ss_pred -------------------------c----C-----------CCC---------c-------------------------
Q 006068 205 -------------------------L----G-----------ATD---------E------------------------- 210 (662)
Q Consensus 205 -------------------------~----g-----------~~~---------~------------------------- 210 (662)
+ + .++ +
T Consensus 165 p~~~Pig~~~~f~Gvvdl~~~~~~~~~~~~~~~~~~~e~~~~~dd~lle~~l~~~~~~~l~~~lel~~~~~~~~~~~~~~ 244 (526)
T PRK00741 165 PITWPIGMGKRFKGVYDLYNDEVELYQPGEGHTIQEVEIIKGLDNPELDELLGEDLAEQLREELELVQGASNEFDLEAFL 244 (526)
T ss_pred eEEeccccCCceeEEEEeecceeeecccCCCCcceeeeeccCCCHHHHHHHhcccHHHHHHHHHHhhhhcccchhHHHHh
Confidence 0 0 000 0
Q ss_pred -CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCC---------CCCCceeEEEeee---eecccc
Q 006068 211 -QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS---------LDAPFQMLVTMME---KDFYLG 277 (662)
Q Consensus 211 -~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~---------~~~p~~~~V~~~~---~~~~~G 277 (662)
..-+||+++||.+++ |+.+||++|++++|+|... .+.+|.++|||+. .+++.|
T Consensus 245 ~~~~~PV~~GSA~~n~--------------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~VFK~~~~m~~~~~g 310 (526)
T PRK00741 245 AGELTPVFFGSALNNF--------------GVQEFLDAFVEWAPAPQPRQTDEREVEPTEEKFSGFVFKIQANMDPKHRD 310 (526)
T ss_pred cCCeEEEEEeecccCc--------------CHHHHHHHHHHHCCCCCcccccceeecCCCCceEEEEEEEEecCCCCcCc
Confidence 012899999999999 9999999999999999632 2467999999998 456999
Q ss_pred eEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCC
Q 006068 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTT 357 (662)
Q Consensus 278 ~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~ 357 (662)
+++|+||+||+++.|+.|++.+.+ +.+|+.+++.+.|.++.++++|.|||||++.|++++++|||||+.+ +.
T Consensus 311 rlafvRV~sG~l~~g~~v~~~~~~-------k~~ri~~~~~~~g~~~~~v~~a~aGDIv~v~~l~~~~~GDTL~~~~-~~ 382 (526)
T PRK00741 311 RIAFVRVCSGKFEKGMKVRHVRTG-------KDVRISNALTFMAQDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KL 382 (526)
T ss_pred eEEEEEEeccEECCCCEEEeccCC-------ceEEecceEEEecCCceECceeCCCCEEEEECCCCCccCCCccCCC-cc
Confidence 999999999999999999988643 5789999999999999999999999999999999999999999866 67
Q ss_pred CCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHh
Q 006068 358 ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRR 436 (662)
Q Consensus 358 ~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrr 436 (662)
.++++++++|++++++.|.++ .+..||..+|.++++|| ++++..+ .+++++|+|||+|||+|+++||++
T Consensus 383 ~~~~i~~~~P~~~~~v~p~~~---------~d~~kl~~aL~~L~eED-~l~~~~~~~t~e~il~g~G~lhleV~~~RL~~ 452 (526)
T PRK00741 383 KFTGIPNFAPELFRRVRLKNP---------LKQKQLQKGLVQLSEEG-AVQVFRPLDNNDLILGAVGQLQFEVVAHRLKN 452 (526)
T ss_pred ccCCCCCCCccEEEEEEECCc---------hhHHHHHHHHHHHhhcC-CeEEEECCCCCCEEEEEEeHHHHHHHHHHHHH
Confidence 788999999999999999876 68899999999999999 5999987 777899999999999999999988
Q ss_pred c-CeEEEEeCCEEEEEE-ec
Q 006068 437 E-GFELSVSPPKVMYKT-EN 454 (662)
Q Consensus 437 e-g~ev~vs~P~V~yrE-~~ 454 (662)
+ |+++.+++|+|++-. +.
T Consensus 453 ey~v~v~~~~~~v~~~rw~~ 472 (526)
T PRK00741 453 EYNVEAIYEPVGVATARWVE 472 (526)
T ss_pred HhCCEEEEecCCccEEEEEe
Confidence 6 999999999999855 53
No 21
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=100.00 E-value=1.1e-59 Score=526.40 Aligned_cols=359 Identities=24% Similarity=0.349 Sum_probs=314.5
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTP 127 (662)
.++|||+|+||+|+|||||+++|++.+|... ...+++|+.+.|++||+|+.+....+.|+++++||||||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 5689999999999999999999999887531 124789999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh---
Q 006068 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--- 204 (662)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~--- 204 (662)
||.+|..++.++++.+|++|+|||+.+|+..++..+|+.+...++|+|+|+||+|+..+++..+.+ ++.+.+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~~~~~~~ll~---~i~~~l~~~~~ 165 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRDIRDPLELLD---EVENELKINCA 165 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccCCCHHHHHH---HHHHHhCCCCc
Confidence 999999999999999999999999999999999999999999999999999999998777644322 22221110
Q ss_pred -------------------------c----CC-----------CC--------------------------c--------
Q 006068 205 -------------------------L----GA-----------TD--------------------------E-------- 210 (662)
Q Consensus 205 -------------------------~----g~-----------~~--------------------------~-------- 210 (662)
+ +. .+ +
T Consensus 166 ~~~~PIg~~~~f~gv~d~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~le~~~~~~~~~~~~~~~ 245 (527)
T TIGR00503 166 PITWPIGCGKLFKGVYHLLKDETYLYQSGTGGTIQAVRQVKGLNNPALDSAVGSDLAQQLRDELELVEGASNEFDLAAFH 245 (527)
T ss_pred cEEEEecCCCceeEEEEcccCcceecCccCCCceeEeehhccCCChhhhhhhhHHHHHHHHHHHHHHhhhccccCHHHHh
Confidence 0 00 00 0
Q ss_pred -CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCC---------CCCCceeEEEeeee--e-cccc
Q 006068 211 -QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS---------LDAPFQMLVTMMEK--D-FYLG 277 (662)
Q Consensus 211 -~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~---------~~~p~~~~V~~~~~--~-~~~G 277 (662)
..-+||+++||.++. |++.||++|++++|+|... .+.||.++|||+.+ | ++.|
T Consensus 246 ~~~~~PV~~GSA~~n~--------------Gv~~LLd~i~~~~PsP~~~~~~~~~~~~~~~~~~~~VFK~~~~mdp~~~g 311 (527)
T TIGR00503 246 GGEMTPVFFGTALGNF--------------GVDHFLDGLLQWAPKPEARQSDTRTVEPTEEKFSGFVFKIQANMDPKHRD 311 (527)
T ss_pred cCCeeEEEEeecccCc--------------cHHHHHHHHHHHCCCCccccCCceecCCCCCCeeEEEEEEEeccCcccCc
Confidence 012799999999998 9999999999999999642 24789999999988 7 5999
Q ss_pred eEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCC
Q 006068 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTT 357 (662)
Q Consensus 278 ~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~ 357 (662)
+++|+||+||+++.|+.|++.+.+ +++|+++++.+.|.++.++++|.|||||++.|++++++|||||+.+ +.
T Consensus 312 riaf~RV~sG~l~~g~~v~~~~~~-------k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~~-~~ 383 (527)
T TIGR00503 312 RVAFMRVVSGKYEKGMKLKHVRTG-------KDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGE-KI 383 (527)
T ss_pred eEEEEEEeeeEEcCCCEEEecCCC-------CcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCCC-ce
Confidence 999999999999999999988642 5789999999999999999999999999999999999999999844 57
Q ss_pred CCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHh
Q 006068 358 ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRR 436 (662)
Q Consensus 358 ~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrr 436 (662)
.++++++++|++++++.+.++ .+..||.++|.++++||| +++..+ .+++++|+|+|+|||+|+++||++
T Consensus 384 ~~~~i~~~~P~~~~~v~~~~~---------~d~~kl~~aL~~L~eED~-l~v~~~~~t~e~il~g~GelhleV~~~RL~~ 453 (527)
T TIGR00503 384 KFTGIPNFAPELFRRIRLKDP---------LKQKQLLKGLVQLSEEGA-VQVFRPLDNNDLIVGAVGVLQFDVVVYRLKE 453 (527)
T ss_pred eecCCCCCCcceEEEEEECCh---------hhHHHHHHHHHHHHhhCC-eEEEEcCCCCCEEEEEEeHHHHHHHHHHHHH
Confidence 788899999999999999875 688999999999999997 999987 677899999999999999999987
Q ss_pred c-CeEEEEeCCEEEEE
Q 006068 437 E-GFELSVSPPKVMYK 451 (662)
Q Consensus 437 e-g~ev~vs~P~V~yr 451 (662)
+ |+++.+++|+|+.-
T Consensus 454 ey~v~v~~~~~~v~~~ 469 (527)
T TIGR00503 454 EYNVEARYEPVNVATA 469 (527)
T ss_pred HhCCeEEEeCCCceEE
Confidence 6 99999999999874
No 22
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-59 Score=490.80 Aligned_cols=469 Identities=27% Similarity=0.361 Sum_probs=380.4
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCC----CCccccccccccccccceeEeeeEEEEEec---------------
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGAD----IPHERAMDSISLERERGITIASKVTGISWR--------------- 117 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~----~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--------------- 117 (662)
..++||+.+|+|+|||||||.+.|...+|.. ....+++|+...|++|||||.+...++.++
T Consensus 16 ~~NiRNmSVIAHVDHGKSTLTDsLV~kAgIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~ 95 (842)
T KOG0469|consen 16 KKNIRNMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDG 95 (842)
T ss_pred ccccccceEEEEecCCcchhhHHHHHhhceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCC
Confidence 4579999999999999999999999999853 345799999999999999999999888663
Q ss_pred -CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC----CCHHHHH
Q 006068 118 -ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA----VSEERCD 192 (662)
Q Consensus 118 -~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~----~~~~~~~ 192 (662)
++.||+||.|||.||..|+..+|+..||+++|||+.+|+..||+.++++|....+..++|+||+|+.- ...+.+.
T Consensus 96 ~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLy 175 (842)
T KOG0469|consen 96 NGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELY 175 (842)
T ss_pred cceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999832 2333333
Q ss_pred HHHHHHHHHH----HhcCC---CCcCCC---ccEEEcccccCccCCc--------------------------cCCC---
Q 006068 193 EVESLVFDLF----ANLGA---TDEQLD---FPVLYASAKEGWASST--------------------------FTKD--- 233 (662)
Q Consensus 193 ei~~~v~~l~----~~~g~---~~~~~~---~Pvi~~SA~~g~~~~~--------------------------~~~~--- 233 (662)
+..+.+.+-+ ..+|. .+.+++ -.+-++|+++||++.- +++.
T Consensus 176 qtf~R~VE~vNviisTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktk 255 (842)
T KOG0469|consen 176 QTFQRIVENVNVIISTYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTK 255 (842)
T ss_pred HHHHHHHhcccEEEEecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCC
Confidence 3333222211 11111 111110 1267899999995420 0000
Q ss_pred CC--------------------------------------------------------C------------CccchHHHH
Q 006068 234 PP--------------------------------------------------------A------------DVRNMSQLL 245 (662)
Q Consensus 234 ~~--------------------------------------------------------~------------~~~gv~~Ll 245 (662)
.+ . +-.--+.||
T Consensus 256 k~~~s~t~~~gn~~~r~F~~~iLdPIykvfdaimN~kkeei~~llekl~v~lk~~~kd~eGK~LlK~vMr~wLPAadall 335 (842)
T KOG0469|consen 256 KWSKSATDAEGNPLRRAFCMFILDPIYKVFDAIMNFKKEEIATLLEKLEVTLKGDEKDLEGKALLKVVMRKWLPAADALL 335 (842)
T ss_pred cccccccccccCccccceeEEeechHHHHHHHHhhccHHHHHHHHHHhcceeccccccccchHHHHHHHHHhcchHHHHH
Confidence 00 0 001126789
Q ss_pred HHHHhhCCCCC-------------------------CCCCCCceeEEEeeeeecccce-EEEEEEeeceeccCCEEEEee
Q 006068 246 DAIIRHVPPPK-------------------------ASLDAPFQMLVTMMEKDFYLGR-ILTGRVSSGVVSVGDKVHGLR 299 (662)
Q Consensus 246 d~I~~~lP~p~-------------------------~~~~~p~~~~V~~~~~~~~~G~-i~~gRV~sG~l~~Gd~V~~~~ 299 (662)
++|.-++|+|. +|+++|+.++|+|+....-.|| ++|||||+|++..|..+.+..
T Consensus 336 emIalhLPSPvtaQkyR~e~LYEGP~DDe~a~aik~CD~~aplmmYvSKMvPtsDkgRFyAFGRVFsG~v~~G~KvRiqg 415 (842)
T KOG0469|consen 336 EMIALHLPSPVTAQKYRAEYLYEGPADDEAAVAIKNCDPKAPLMMYVSKMVPTSDKGRFYAFGRVFSGKVFTGLKVRIQG 415 (842)
T ss_pred HHHHhhCCCchHHHHHHHHHhhcCCCchHHhhHhhccCCCCCeEEeeeeccccCCCceEEEEeeeecceeccCcEEEEeC
Confidence 99999999993 3789999999999988777777 699999999999999999987
Q ss_pred ccCC-CCc-ceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCC-ccCceeeecCCCCCCCCCcCC-CCeeeeeeee
Q 006068 300 ITDS-GTE-KIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEVTTALPTIELD-PPTISMTFGV 375 (662)
Q Consensus 300 ~~~~-~~~-~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~~~~~~~l~~~~~~-~P~~~~~~~~ 375 (662)
+++. |.+ ......|.+-..+.|...++++...||+|+++.|+++. ..+-||++.+....+..++|. .|++.+++++
T Consensus 416 PnY~PGkkedl~~K~iqRtvlMMGr~vepied~PaGNIiGlvGvDqfLvKtGTiTt~e~AHNmrvMKFSVSPVV~VAVe~ 495 (842)
T KOG0469|consen 416 PNYVPGKKEDLYIKAIQRTVLMMGRFVEPIEDCPAGNIIGLVGVDQFLVKTGTITTSEAAHNMRVMKFSVSPVVRVAVEA 495 (842)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhcccccccccCCCCcEEEEeehhHhhhccCceeehhhhccceEEEeeccceEEEEEec
Confidence 6632 210 00011234444678999999999999999999999874 346788887766666666654 5899999988
Q ss_pred cCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEecCCCeEEEEecChhhHHHHHHHHHhc--CeEEEEeCCEEEEEE-
Q 006068 376 NDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE--GFELSVSPPKVMYKT- 452 (662)
Q Consensus 376 ~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~G~GeLhL~vl~e~Lrre--g~ev~vs~P~V~yrE- 452 (662)
++. .|..||.+.|.|++..||.+.+..+++++++|.|-|||||+|++.+|... ++.+..|+|-|.|||
T Consensus 496 Knp---------~DLpKLvEGLkrLakSDP~v~~~~~esGehiiAgaGeLHLEICLkDLeedhA~iPlk~sdPvVsYrEt 566 (842)
T KOG0469|consen 496 KNP---------ADLPKLVEGLKRLAKSDPMVQCIIEESGEHIIAGAGELHLEICLKDLEEDHACIPLKKSDPVVSYRET 566 (842)
T ss_pred CCh---------hhhHHHHHHHHHHhccCCeEEEEeccCCceEEeccchhhHHHHHhhHhhcccCCceecCCCeeeeecc
Confidence 764 68899999999999999999999988888999999999999999999864 999999999999999
Q ss_pred ecC-----------------------------------------------------------------------------
Q 006068 453 ENG----------------------------------------------------------------------------- 455 (662)
Q Consensus 453 ~~g----------------------------------------------------------------------------- 455 (662)
+..
T Consensus 567 vs~~ss~~~lsKSpNKHNRi~mtaeP~~~~l~~~i~~g~v~~rd~fK~rAr~~aeky~~dvt~aRKIWCfgPd~tg~Nll 646 (842)
T KOG0469|consen 567 VSEESSQTCLSKSPNKHNRIYMTAEPMDDGLSDDIENGKVNARDEFKARARILAEKYGWDVTEARKIWCFGPDGTGPNLL 646 (842)
T ss_pred cccccchhhhccCCcccceeEEecccCCchhhhhhhcCccChhHHHHHHHHHHHHHhCCchhhhheeeEeCCCCCCCcEE
Confidence 210
Q ss_pred ----------------------------------------------------------------------------eeee
Q 006068 456 ----------------------------------------------------------------------------VKLE 459 (662)
Q Consensus 456 ----------------------------------------------------------------------------~~~E 459 (662)
.++|
T Consensus 647 ~D~TK~vqylnEIKdsVvagFqwA~keG~l~~E~mRgvrfni~DvtLHADAIHRGggQiipt~rr~~ya~~l~A~P~l~E 726 (842)
T KOG0469|consen 647 VDQTKGVQYLNEIKDSVVAGFQWATKEGPLFGENMRGVRFNILDVTLHADAIHRGGGQIIPTARRVLYASVLTAGPILQE 726 (842)
T ss_pred EecchhhHHHHHHHHHHHHHHHHHhccCCcccccccceeEEeeeeeeehhhhhcCCCeechHHHHHHHHHHHhcCceecC
Confidence 1789
Q ss_pred cceeEEEEE----chhHHHHhhccceEEEeecccc---C-CEEEEEEEeccccccchhhhccccceeeEEeeeeecceee
Q 006068 460 PIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEK 531 (662)
Q Consensus 460 P~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~ 531 (662)
|++.|+|.| +|.|++.|++|||.+ .+.+ | ..+.+++..|..|.+||..+|||.|+|++.-++.|+||+.
T Consensus 727 PvylvEIq~pe~avGgiy~vLn~kRG~v---~~e~q~~Gtp~f~vkayLPVnESFgFt~dLrs~t~GqAfpq~vFdHws~ 803 (842)
T KOG0469|consen 727 PVYLVEIQCPEQAVGGIYGVLNRKRGHV---FEEEQVPGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQMVFDHWSI 803 (842)
T ss_pred ceEEEEEeCchhhhchhhheeeccccce---ecccccCCCcceEEEEEeecccccccchhhhcccCCccccceeeecccc
Confidence 999999999 999999999999999 7666 5 7999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 006068 532 HRGLLG 537 (662)
Q Consensus 532 ~~g~~~ 537 (662)
.||+..
T Consensus 804 lpgdp~ 809 (842)
T KOG0469|consen 804 LPGDPL 809 (842)
T ss_pred CCCCCC
Confidence 999863
No 23
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3e-49 Score=424.43 Aligned_cols=469 Identities=24% Similarity=0.325 Sum_probs=370.0
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC-----CccccccccccccccceeEeeeEEEEEe-----cCeeEEEEe
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-----PHERAMDSISLERERGITIASKVTGISW-----RENELNMVD 125 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-----~~~~v~D~~~~E~ergiTi~~~~~~~~~-----~~~~iniID 125 (662)
.+.++|||+++||-+||||+|++.|..+++... ..-+++|....|++||.+|.+...++.. +.+-+||+|
T Consensus 124 ~p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilD 203 (971)
T KOG0468|consen 124 NPERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILD 203 (971)
T ss_pred CcceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeec
Confidence 356799999999999999999999999988533 2247899999999999999998887754 457899999
Q ss_pred CCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC----CCH----HHHHHHHHH
Q 006068 126 TPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA----VSE----ERCDEVESL 197 (662)
Q Consensus 126 TPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~----~~~----~~~~ei~~~ 197 (662)
||||.+|..|+.++|+.+|++++|||+.+|++-+|+.+++.+.+..+|+++|+||+|+.. ..+ .++.-+.++
T Consensus 204 TPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~ 283 (971)
T KOG0468|consen 204 TPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDE 283 (971)
T ss_pred CCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999832 111 223334555
Q ss_pred HHHHHHhcCCCCcCC----CccEEEcccccCccCC-----------------------cc------------CCCCCC--
Q 006068 198 VFDLFANLGATDEQL----DFPVLYASAKEGWASS-----------------------TF------------TKDPPA-- 236 (662)
Q Consensus 198 v~~l~~~~g~~~~~~----~~Pvi~~SA~~g~~~~-----------------------~~------------~~~~~~-- 236 (662)
+.+++..+..++..+ .-.|++.|.+.|+.+. -| ...+..
T Consensus 284 iN~~is~~s~~~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~ 363 (971)
T KOG0468|consen 284 INNLISTFSKDDNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGS 363 (971)
T ss_pred hcchhhhcccccccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCc
Confidence 555554443332222 1237788888776321 01 000000
Q ss_pred -------------------------------------------CccchH---------------HHHHHHHhhCCCCCC-
Q 006068 237 -------------------------------------------DVRNMS---------------QLLDAIIRHVPPPKA- 257 (662)
Q Consensus 237 -------------------------------------------~~~gv~---------------~Lld~I~~~lP~p~~- 257 (662)
..-++. -+.+++++++|+|.+
T Consensus 364 ~~rsFVeFILePlYKi~sq~igd~~~~l~~~l~e~~v~ls~e~~k~n~rPll~lvc~~ffg~~sgfvd~~v~hi~sP~e~ 443 (971)
T KOG0468|consen 364 GSRSFVEFILEPLYKIFSQVIGDEKDSLKGLLAELGVRLSKEAYKLNPRPLLRLVCKSFFGIESGFVDMPVEHIPSPREN 443 (971)
T ss_pred ccchhhhhhHhHHHHHHHHHhcchhhhhhhhhhhhcccccHHHhhcCccHHHHHHHHHhccchhhhhHhhHhhcCChhhh
Confidence 000112 345777888988842
Q ss_pred ------------------------CCCCCceeEEEeeeee-cccceEEEEEEeeceeccCCEEEEeeccCCCC--cceEE
Q 006068 258 ------------------------SLDAPFQMLVTMMEKD-FYLGRILTGRVSSGVVSVGDKVHGLRITDSGT--EKIEE 310 (662)
Q Consensus 258 ------------------------~~~~p~~~~V~~~~~~-~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~--~~~~~ 310 (662)
++++|+...+++.+.. +..-..++|||+||+++.|+.|.+...+.+.. +....
T Consensus 444 a~~K~~hsy~G~~~~~i~~~m~~c~~~~pLm~h~tklyp~dD~~~f~~f~rv~Sg~~~~~q~V~vlgeny~leDEeD~~~ 523 (971)
T KOG0468|consen 444 AARKAEHSYTGTKDSLIYEGMVECNASGPLMVHVTKLYPRDDTVQFHVFGRVYSGQVVTGQDVRVLGENYSLEDEEDMVI 523 (971)
T ss_pred hccccceeecCCCcchHHHHHHhhCCCCceeEEeecceecCCceeeeeeeeeeecceeecceeeEeeccccCCCccccee
Confidence 5678999999998754 34455799999999999999999987653321 13445
Q ss_pred eEEEeEEeecCCceeeecccCCCCEEEEcCcCCC-ccCceeeecCCC---CCCCCCc-CCCCeeeeeeeecCCCCCCCCC
Q 006068 311 GKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEVT---TALPTIE-LDPPTISMTFGVNDSPLAGRDG 385 (662)
Q Consensus 311 ~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~~~~~---~~l~~~~-~~~P~~~~~~~~~~sp~~~~~~ 385 (662)
..|.+|+.+.+..+.+|..|.||.+|.|.|++.. ....||++.+.. ..++++. ...|++.+++.|-+ +
T Consensus 524 ~~v~el~v~~arY~i~V~~~~~G~~VLI~Gidq~i~KtaTi~~~~~ked~yiFrpl~~~t~~VvKiaveP~n----P--- 596 (971)
T KOG0468|consen 524 CEVGELWVVRARYRIPVSRAPAGLWVLIEGVDQSIVKTATIKSLEYKEDVYIFRPLKFNTEPVVKVAVEPLN----P--- 596 (971)
T ss_pred eeeeeeeeeeeeEEEEecccCCCcEEEEeccchHHhhhhheeccccccceeeccchhcCCcceEEEEeccCC----h---
Confidence 7799999999999999999999999999999863 346788765443 3445554 45777777776543 3
Q ss_pred cccchhhHHhHhhhhhccCceEEEEecCCCeEEEEecChhhHHHHHHHHHhc--CeEEEEeCCEEEEEE--ec-------
Q 006068 386 THLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE--GFELSVSPPKVMYKT--EN------- 454 (662)
Q Consensus 386 ~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~G~GeLhL~vl~e~Lrre--g~ev~vs~P~V~yrE--~~------- 454 (662)
.+..|+.++|.|....-|.+...-+++++++|.|-|||.|++++.+||.- .+|++++.|-|.|-| ++
T Consensus 597 --sELPKmldgLrKinKsYPl~~tkVEESGEHvilGtGElYmDcvlyDLR~~yseieikvaDPvv~F~Et~vetssikcf 674 (971)
T KOG0468|consen 597 --SELPKMLDGLRKINKSYPLVITKVEESGEHVILGTGELYMDCVLYDLRKSYSEIEIKVADPVVRFCETVVETSSIKCF 674 (971)
T ss_pred --hhhhHHHHHHHhhcccCCcEEEehhhcCceEEecCchhhHHHHHHHHHHHHhhhceeecCceeEEEEeeecccchhhh
Confidence 34589999999999999987666556788999999999999999999973 899999999999988 22
Q ss_pred ------C-------------------------------------------------------------------------
Q 006068 455 ------G------------------------------------------------------------------------- 455 (662)
Q Consensus 455 ------g------------------------------------------------------------------------- 455 (662)
+
T Consensus 675 aetpnkknkItmiaEPlek~l~eDiEng~v~I~wn~krl~effqt~YdWDlLAaRsiWaFgpd~~GpNiL~dDTLp~evd 754 (971)
T KOG0468|consen 675 AETPNKKNKITMIAEPLEKGLAEDIENGVVVIDWNRKRLGEFFQTKYDWDLLAARSIWAFGPDYTGPNILLDDTLPTEVD 754 (971)
T ss_pred ccCCCccCceeeeechhhhhhhHHhhcCeEEeccchhhhhhhhhcccchhhhhhcceeccCCCCCCCceeecCcCcchhh
Confidence 0
Q ss_pred ----------------------------------------------------------------------eeeecceeEE
Q 006068 456 ----------------------------------------------------------------------VKLEPIEEVT 465 (662)
Q Consensus 456 ----------------------------------------------------------------------~~~EP~~~~~ 465 (662)
+++||++.|+
T Consensus 755 k~ll~~vkesivQGFqW~trEGPLc~EpIr~VkfKlld~~ia~e~l~rgggQiIPtaRrv~YsafL~AtPrLmEP~Y~VE 834 (971)
T KOG0468|consen 755 KNLLSSVKESIVQGFQWGTREGPLCDEPIRNVKFKLLDAVIAPEPLHRGGGQIIPTARRVAYSAFLMATPRLMEPVYLVE 834 (971)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCccCCcccceeEEEeecccCccccccCCCccchHHHHHHHHHHHhhchhhcCceEEEE
Confidence 2789999999
Q ss_pred EEE----chhHHHHhhccceEEEeecccc---C-CEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCC
Q 006068 466 IEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (662)
Q Consensus 466 i~v----~g~v~~~l~~Rrg~i~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (662)
|.+ ...|.+.|++|||++ ..-. | -...++|.+|.-+.+||.++||..|+|+|.+.+.|+||+++||+.
T Consensus 835 i~apad~v~~Vy~vl~rRRGhV---~~d~p~pGSPly~v~a~iPvieSfGFETDLR~hTqGqa~C~~vF~HW~~VPGDp 910 (971)
T KOG0468|consen 835 ITAPADCVPAVYTVLSRRRGHV---TQDIPVPGSPLYTVKAYLPVIESFGFETDLRVHTQGQAFCLSVFDHWRIVPGDP 910 (971)
T ss_pred EecccchHHHHHHHHHhhcCce---eecCCCCCCchhheeeecccccccCcccceeeeccchhHHHHhhhhcccCCCCc
Confidence 998 888999999999999 5544 4 578899999999999999999999999999999999999999985
No 24
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.3e-49 Score=410.46 Aligned_cols=358 Identities=26% Similarity=0.361 Sum_probs=300.1
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTP 127 (662)
.+-|++|||.|+|+|||||++.||...|+.. ...+.+|++..|++|||++.++...|+|+++.+||+|||
T Consensus 10 ~rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 10 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 3568999999999999999999999887521 234678999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH----
Q 006068 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA---- 203 (662)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~---- 203 (662)
||.||...+.|.|.++|.||+||||..|+++||+++++.|+..++|++-|+||+|++..++- |+++++.+.+.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rdP~---ELLdEiE~~L~i~~~ 166 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRDPL---ELLDEIEEELGIQCA 166 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeeccccccCChH---HHHHHHHHHhCccee
Confidence 99999999999999999999999999999999999999999999999999999999988873 33333322221
Q ss_pred ----hcCC-----------------------------------CCcCC--------------------------------
Q 006068 204 ----NLGA-----------------------------------TDEQL-------------------------------- 212 (662)
Q Consensus 204 ----~~g~-----------------------------------~~~~~-------------------------------- 212 (662)
.+|. .+..+
T Consensus 167 PitWPIG~gk~F~Gvy~l~~~~v~~y~~~~~~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~ee~EL~~~a~~~Fd~~~fl 246 (528)
T COG4108 167 PITWPIGMGKDFKGVYHLYNDEVELYESGHTDQERRADIVKGLDNPELDALLGEDLAEQLREELELVQGAGNEFDLEAFL 246 (528)
T ss_pred cccccccCCcccceeeeeccCEEEEeccCCCccccccccccCCCChhHHhhhchHHHHHHHHHHHHHHhhccccCHHHHh
Confidence 0000 00000
Q ss_pred ---CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC---------CCCCCceeEEEeeee---ecccc
Q 006068 213 ---DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA---------SLDAPFQMLVTMMEK---DFYLG 277 (662)
Q Consensus 213 ---~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~---------~~~~p~~~~V~~~~~---~~~~G 277 (662)
-.||+++||..+. |++.+|++++++.|+|.. ..+..|..+|||+.. ..+..
T Consensus 247 ~G~~TPVFFGSAl~NF--------------GV~~~L~~~~~~AP~P~~~~a~~~~v~p~e~kfsGFVFKIQANMDp~HRD 312 (528)
T COG4108 247 AGELTPVFFGSALGNF--------------GVDHFLDALVDWAPSPRARQADTREVEPTEDKFSGFVFKIQANMDPKHRD 312 (528)
T ss_pred cCCccceEehhhhhcc--------------CHHHHHHHHHhhCCCCCcccCCcCcccCCCCccceEEEEEEcCCCccccc
Confidence 1699999999999 999999999999999964 224569999999864 34678
Q ss_pred eEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCC
Q 006068 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTT 357 (662)
Q Consensus 278 ~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~ 357 (662)
||++.||.||++..|+.+...+.+ +..+++.-..+.+..|+.+++|.|||||+|..-..+++|||++.. ...
T Consensus 313 RIAFmRv~SGkferGMkv~h~rtG-------K~~~ls~~~~f~A~dRe~ve~A~aGDIIGl~nhG~~~IGDT~t~G-e~l 384 (528)
T COG4108 313 RIAFMRVCSGKFERGMKVTHVRTG-------KDVKLSDALTFMAQDRETVEEAYAGDIIGLHNHGTIQIGDTFTEG-EKL 384 (528)
T ss_pred ceeEEEeccccccCCceeeeeecC-------CceEecchHhhhhhhhhhhhhccCCCeEeccCCCceeecceeecC-cee
Confidence 999999999999999999988753 567888888899999999999999999999776679999999987 446
Q ss_pred CCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEe-cCCCeEEEEecChhhHHHHHHHHHh
Q 006068 358 ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIP-GMAETYEVQGRGELQLGILIENMRR 436 (662)
Q Consensus 358 ~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~-~~~~~~~v~G~GeLhL~vl~e~Lrr 436 (662)
.+++++...|-+.+.+..++. +...++..+|.++++|-. +++-. ..+...+|+..|.||++|+.+||+.
T Consensus 385 ~f~giP~FaPE~frrvr~kd~---------~K~Kql~Kgl~QL~eEGa-vQ~f~p~~~~d~IlGAVG~LQFeV~~~RL~~ 454 (528)
T COG4108 385 KFTGIPNFAPELFRRVRLKDP---------LKQKQLKKGLEQLAEEGA-VQVFKPLDGNDLILGAVGQLQFEVVQARLKN 454 (528)
T ss_pred eecCCCCCCHHHHHHHhcCCh---------HHHHHHHHHHHHHhhcCe-eEEEecCCCCCceEEeeeeeehHHHHHHHHh
Confidence 677787778989888888763 556899999999999975 55554 4556689999999999999999998
Q ss_pred c-CeEEEEeCCEEEE
Q 006068 437 E-GFELSVSPPKVMY 450 (662)
Q Consensus 437 e-g~ev~vs~P~V~y 450 (662)
| |+|+.+.+-.+.+
T Consensus 455 EY~ve~~~e~~~~~~ 469 (528)
T COG4108 455 EYNVEAVFEPVNFST 469 (528)
T ss_pred hhCCeEEEeeccceE
Confidence 7 9999887654433
No 25
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.3e-46 Score=411.31 Aligned_cols=465 Identities=25% Similarity=0.325 Sum_probs=359.5
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD 131 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d 131 (662)
..+.+|||++++|+|||||||++.|+...|... ..-++||+.+.|+.||||..++..+...+++.+|+||+|||.|
T Consensus 5 ~~~~irn~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvd 84 (887)
T KOG0467|consen 5 GSEGIRNICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVD 84 (887)
T ss_pred CCCceeEEEEEEEecCCccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccc
Confidence 456799999999999999999999999988543 2358999999999999999999999888999999999999999
Q ss_pred chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC----CCHHH----HHHHHHHHHHHHH
Q 006068 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA----VSEER----CDEVESLVFDLFA 203 (662)
Q Consensus 132 F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~----~~~~~----~~ei~~~v~~l~~ 203 (662)
|.+++..+.+.+|+++++||+.+|+..||..+++++-..++.+|+|+||||+.. ..+.+ +..+.+++..++.
T Consensus 85 f~sevssas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~ 164 (887)
T KOG0467|consen 85 FSSEVSSASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIG 164 (887)
T ss_pred hhhhhhhhhhhcCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHH
Confidence 999999999999999999999999999999999999999999999999999632 33322 1122333332221
Q ss_pred h----c-------------CCCCcCCCccEEEcccccCccCCc----------------------cC-----C-C-----
Q 006068 204 N----L-------------GATDEQLDFPVLYASAKEGWASST----------------------FT-----K-D----- 233 (662)
Q Consensus 204 ~----~-------------g~~~~~~~~Pvi~~SA~~g~~~~~----------------------~~-----~-~----- 233 (662)
. + +...+.-+-.++++||..||++.- |. + .
T Consensus 165 ~~~~~~v~l~~~~~~i~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~~ 244 (887)
T KOG0467|consen 165 QFLGGIVELDDNWENIEDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRICE 244 (887)
T ss_pred HhhcchhhccchhhhhhhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhhc
Confidence 0 0 000011123489999999996531 00 0 0
Q ss_pred -CC--C---------------------Cc-------------------cchHHHHHHH---------------HhhCCCC
Q 006068 234 -PP--A---------------------DV-------------------RNMSQLLDAI---------------IRHVPPP 255 (662)
Q Consensus 234 -~~--~---------------------~~-------------------~gv~~Lld~I---------------~~~lP~p 255 (662)
.. . .+ .....+++++ +.++|.|
T Consensus 245 ~~~~~grkplf~~~vle~lw~iy~~~~~~~d~~~~~ki~k~l~i~~l~r~~~~ll~~im~~wLPls~avll~a~~~lp~p 324 (887)
T KOG0467|consen 245 GKKLKGRKPLFVQFVLENLWRIYELALKSRDKEKLEKIAKSLNIKLLPRDLRNLLDAIMSTWLPLSDAVLLTVVYKLPDP 324 (887)
T ss_pred ccCcccCCCccceeehhhHHHHHHHHhccchHHHHHHHhhhcccccchHHHHHHHHHHHHhhcccccchHHHHHHhcCCH
Confidence 00 0 00 0011223332 2344443
Q ss_pred C----------------------------CCCCCCceeEEEeeeeecc----cc-eEEEEEEeeceeccCCEEEEeeccC
Q 006068 256 K----------------------------ASLDAPFQMLVTMMEKDFY----LG-RILTGRVSSGVVSVGDKVHGLRITD 302 (662)
Q Consensus 256 ~----------------------------~~~~~p~~~~V~~~~~~~~----~G-~i~~gRV~sG~l~~Gd~V~~~~~~~ 302 (662)
. .+.++|..++|.+....+- .- -++++|||+|+++.||.++....+
T Consensus 325 l~~~~~r~~rl~~s~~~~~~~~~~~~v~~~~~~~pviv~Vskm~~~~~k~lp~~~l~~~ari~sgTlr~g~~v~v~~pd- 403 (887)
T KOG0467|consen 325 IRSQAERGLRLLSSSDHRSDPPLTKAVKSCSKESPVLVFVSKMLATPLKYLPQSRLLAFARIFSGTLRVGQVVYVLGPD- 403 (887)
T ss_pred HHHHHHhhceeccCcccccChHhhhhhhcCCCCCcEEEEEEeeeccchhhCchhhheeeeeeccCceeeccEeeecCCC-
Confidence 1 1346788888888654331 22 479999999999999999998652
Q ss_pred CCC-cceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCC-CCCCCCcCCCCeeeeeeeecCCCC
Q 006068 303 SGT-EKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVT-TALPTIELDPPTISMTFGVNDSPL 380 (662)
Q Consensus 303 ~~~-~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~-~~l~~~~~~~P~~~~~~~~~~sp~ 380 (662)
+.. ......+|.++|.+.|...++.+++.+|++++|.|-+.+...-|+|+.... ..+....--.|.+.+++.+.+.
T Consensus 404 ~~~~e~i~~~~ie~lyl~mgqelv~~d~v~~gnv~~I~g~~~vlks~TL~s~~~~~p~~~~~f~~tp~vrvaiep~~p-- 481 (887)
T KOG0467|consen 404 PLSPEHITECTVESLYLFMGQELVPLDEVPSGNVVAIGGAGIVLKSATLCSKVPCGPNLVVNFQITPIVRVAIEPDDP-- 481 (887)
T ss_pred CCCcceeeeeeehhhHHhhcccceeeeccCCCcEEEecccceEeccceecccCCCcceeeeeeeeeeEEEEEeecCCh--
Confidence 211 135678999999999999999999999999999983334456888886332 2222112236888888887542
Q ss_pred CCCCCcccchhhHHhHhhhhhccCceEEEEecCCCeEEEEecChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-e-cC--
Q 006068 381 AGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-E-NG-- 455 (662)
Q Consensus 381 ~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~G~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~-~g-- 455 (662)
.+.++|.+.|.-+...||++++..+..+++.+...||+||+-++.+|+.+ ++++++++|.|+||| + +.
T Consensus 482 -------~em~~L~~glkll~~adp~v~i~v~~~gEhvl~~aGevhlerc~kDL~efa~i~i~vSeP~vpfrET~~e~s~ 554 (887)
T KOG0467|consen 482 -------DEMDKLVEGLKLLNQADPFVKIRVEENGEHVLVTAGEVHLERCLKDLKEFAKIEISVSEPLVPFRETIIEDSD 554 (887)
T ss_pred -------HHhHHHHHHHHhhcccchhhHHHHhhccceeeeeccHHHHHHHHHHHhhhhceEEEecCCccchhhhccccch
Confidence 56789999999999999999998776777999999999999999999985 999999999999999 3 10
Q ss_pred --------------------------------------------------------------------------------
Q 006068 456 -------------------------------------------------------------------------------- 455 (662)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (662)
T Consensus 555 l~~~~~I~~~~~~~~~~~~ki~~~~~pl~~~~v~~l~~~~~ti~~i~~~~~~~~~i~e~~k~~~~e~ls~~~s~~~~~~~ 634 (887)
T KOG0467|consen 555 LLANLSIGQETKCLPRGQLKIKLRVVPLSGAVVDLLDKNSSLISNILRGESRQVPIDESQKGSFEENLSLLISLERLYEF 634 (887)
T ss_pred hhhhhhcCcccccccccceeEEeeecccccceeccccccchhccchhccccccccccccccccccccccHHHHHHHHhhc
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q 006068 456 -------------------------------------------------------------------------------- 455 (662)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (662)
T Consensus 635 ek~~e~~~~~~~~~~Afgp~r~g~nilf~~~~~~~~s~~~~t~~~~~l~~~ivsgfql~~~sGPlc~Ep~~g~~~~~es~ 714 (887)
T KOG0467|consen 635 EKPREKLGSFKDQIIAFGPRRVGPNILFNKDSKLYRSVRRGTPFVARLSESIVSGFQLATSSGPLCNEPMQGICFVLESG 714 (887)
T ss_pred cccHHHHHHHHhhhhcccccccCCceeeccccchhhhhhhcchHHHHHHHHHhhhHhhhhccCcccccCcccEEEEeecc
Confidence
Q ss_pred --------------------------------eeeecceeEEEEE----chhHHHHhhccceEEEeecccc---C-CEEE
Q 006068 456 --------------------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWK 495 (662)
Q Consensus 456 --------------------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~---~-~~~~ 495 (662)
+++.||+.+.|.+ .|.|+..|++|+|+| +.-+ | +.+.
T Consensus 715 ~~e~~e~~~~~~GQviTa~Kescr~Afl~~~pRl~~aMYsC~I~t~~e~LGkvYAVlskR~gkV---LsEem~EgT~~F~ 791 (887)
T KOG0467|consen 715 SAEEMESDGNIGGQLITAVKDSCRAAFLCWSPRIMAAMYSCDIQTASEVLGKVYAVLSKRHGKV---LSEEMKEGTGFFI 791 (887)
T ss_pred CcccccccCCcCceeHHHHHHHHHHHHhcCCHHHhhhheeeeeeehHHHhhhHHhhhhhhcchh---hhhhhhCCCCcEE
Confidence 1456688899988 999999999999999 7655 5 8999
Q ss_pred EEEEeccccccchhhhccccceeeEEeeeeecceeecc
Q 006068 496 LSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHR 533 (662)
Q Consensus 496 i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~ 533 (662)
+++.+|..|.+||+.++|--|+|.++..+.|+||+-..
T Consensus 792 V~aliPVvESFgFadeiRK~TSG~A~pQLvFShwEvId 829 (887)
T KOG0467|consen 792 VTALIPVVESFGFADEIRKGTSGAASPQLVFSHWEVID 829 (887)
T ss_pred EEEEeeeeccccHHHHHhhccccccchhhhccccEEec
Confidence 99999999999999999999999999999999999653
No 26
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-41 Score=350.10 Aligned_cols=285 Identities=28% Similarity=0.373 Sum_probs=249.0
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC-------------------CccccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
....|++++||+|||||||+.+|+++.|... ...++||+..+|++||+|++.....|+.+.
T Consensus 5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k 84 (428)
T COG5256 5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK 84 (428)
T ss_pred CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence 3467999999999999999999999999421 225899999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-------chhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEER 190 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-------~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~ 190 (662)
+.++|+|||||.||..++....+.||.+||||||..| +..||++++..++.+|+.. ||++||||..+|+.++
T Consensus 85 ~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v~wde~r 164 (428)
T COG5256 85 YNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLVSWDEER 164 (428)
T ss_pred ceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEEEEcccccccCHHH
Confidence 9999999999999999999999999999999999998 8999999999999999975 6889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEee
Q 006068 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMM 270 (662)
Q Consensus 191 ~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~ 270 (662)
++++.+++..+++.+|+..+ +++++++||..|.+.....+ ...|..-..||++|- .+..|....+.||++.|.++
T Consensus 165 f~ei~~~v~~l~k~~G~~~~--~v~FIPiSg~~G~Nl~~~s~--~~pWY~GpTLleaLd-~~~~p~~~~d~Plr~pI~~v 239 (428)
T COG5256 165 FEEIVSEVSKLLKMVGYNPK--DVPFIPISGFKGDNLTKKSE--NMPWYKGPTLLEALD-QLEPPERPLDKPLRLPIQDV 239 (428)
T ss_pred HHHHHHHHHHHHHHcCCCcc--CCeEEecccccCCcccccCc--CCcCccCChHHHHHh-ccCCCCCCCCCCeEeEeeeE
Confidence 99999999998889998765 58899999999997665542 223334456777774 77788877899999999999
Q ss_pred eeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCcc
Q 006068 271 EKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSI 346 (662)
Q Consensus 271 ~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~ 346 (662)
+.....|.+.+|||.+|.|++||.|++.+.+ ....|+++... .++++.|.|||.|.+ .|++ +++.
T Consensus 240 ~~i~~~gtv~vGrVEsG~i~~g~~v~~~p~~-------~~~evksie~~----~~~~~~a~~GD~i~~~vrgv~~~dI~~ 308 (428)
T COG5256 240 YSISGIGTVPVGRVESGVIKPGQKVTFMPAG-------VVGEVKSIEMH----HEEISQAEPGDNVGFNVRGVEKNDIRR 308 (428)
T ss_pred EEecCCceEEEEEEeeeeeccCCEEEEecCc-------ceEEEeeeeec----ccccccCCCCCeEEEEecCCchhccCC
Confidence 9988899999999999999999999999854 45678888765 468999999999865 5654 6999
Q ss_pred CceeeecCCCCC
Q 006068 347 GHTVANTEVTTA 358 (662)
Q Consensus 347 GdTl~~~~~~~~ 358 (662)
||.+++++++..
T Consensus 309 Gdv~~~~~n~~t 320 (428)
T COG5256 309 GDVIGHSDNPPT 320 (428)
T ss_pred ccEeccCCCCcc
Confidence 999999887644
No 27
>CHL00071 tufA elongation factor Tu
Probab=100.00 E-value=1.4e-39 Score=356.88 Aligned_cols=285 Identities=30% Similarity=0.385 Sum_probs=238.7
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC----ccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP----HERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~----~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
++.+||+++||+|||||||+++|++..+.... ....+|+.+.|++||+|+++....+.+++.+++|+|||||.+|.
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~ 89 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHH
Confidence 45789999999999999999999998764321 23478999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+.+++..+|++++|||+.+|++.||++++..+...++| +|+|+||+|+.+. .+..+.+.+++..++...+++.+
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~-~~~~~~~~~~l~~~l~~~~~~~~-- 166 (409)
T CHL00071 90 KNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDD-EELLELVELEVRELLSKYDFPGD-- 166 (409)
T ss_pred HHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCH-HHHHHHHHHHHHHHHHHhCCCCC--
Confidence 9999999999999999999999999999999999999999 5688999999542 23445566788888888776543
Q ss_pred CccEEEcccccCccCCccCCC----CCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeece
Q 006068 213 DFPVLYASAKEGWASSTFTKD----PPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~----~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~ 288 (662)
.+|++++||.+|++.....+. ...+..++..|+++|.+++|.|..+.+.||+++|++++++++.|++++|||++|+
T Consensus 167 ~~~ii~~Sa~~g~n~~~~~~~~~~~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~v~~~~g~G~Vv~G~V~sG~ 246 (409)
T CHL00071 167 DIPIVSGSALLALEALTENPKIKRGENKWVDKIYNLMDAVDSYIPTPERDTDKPFLMAIEDVFSITGRGTVATGRIERGT 246 (409)
T ss_pred cceEEEcchhhcccccccCccccccCCchhhhHHHHHHHHHhhCCCCCCCCCCCEEEEEEEEEEeCCCeEEEEEEEecCE
Confidence 479999999999854321111 0122336889999999999989888899999999999999999999999999999
Q ss_pred eccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCccCceeeecC
Q 006068 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTE 354 (662)
Q Consensus 289 l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~GdTl~~~~ 354 (662)
++.||.|.+.+... ....+|++|+... .++++|.|||+|++ .+++ ++..||+||+++
T Consensus 247 l~~Gd~v~i~p~~~-----~~~~~VksI~~~~----~~v~~a~aGd~v~i~l~~i~~~~i~~G~vl~~~~ 307 (409)
T CHL00071 247 VKVGDTVEIVGLRE-----TKTTTVTGLEMFQ----KTLDEGLAGDNVGILLRGIQKEDIERGMVLAKPG 307 (409)
T ss_pred EeeCCEEEEeeCCC-----CcEEEEEEEEEcC----cCCCEECCCceeEEEEcCCCHHHcCCeEEEecCC
Confidence 99999999875321 1457899998754 47899999999966 4664 688999999875
No 28
>PLN00043 elongation factor 1-alpha; Provisional
Probab=100.00 E-value=9.5e-40 Score=360.09 Aligned_cols=281 Identities=25% Similarity=0.307 Sum_probs=237.1
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC-------------------ccccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
++.+||+++||+|||||||+++|++.+|.... ..+++|..++|++||+|++.....++|++
T Consensus 5 k~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~ 84 (447)
T PLN00043 5 KVHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTK 84 (447)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCC
Confidence 34689999999999999999999998884211 13689999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCch-------hhHHHHHHHHHHcCCCc-EEEeccCCCC--CCCH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLRP-ILLLNKVDRP--AVSE 188 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~-------~qt~~~l~~~~~~~lp~-IvviNKiD~~--~~~~ 188 (662)
+.++|+|||||.||..++..+++.+|++||||||.+|.+ .||+++|..+...|+|. |||+||||+. .++.
T Consensus 85 ~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~~~~~~~~ 164 (447)
T PLN00043 85 YYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSK 164 (447)
T ss_pred EEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccCCchhhhH
Confidence 999999999999999999999999999999999999853 79999999999999975 7789999986 3455
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEE
Q 006068 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVT 268 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~ 268 (662)
.++.++.+++.+++...|+..+ .+|++++||++|.+..+.... ..|.....|+++|. .++.|....+.||+++|.
T Consensus 165 ~~~~~i~~ei~~~l~~~g~~~~--~~~~ipiSa~~G~ni~~~~~~--~~Wy~g~tLl~~l~-~i~~p~~~~~~plr~~I~ 239 (447)
T PLN00043 165 ARYDEIVKEVSSYLKKVGYNPD--KIPFVPISGFEGDNMIERSTN--LDWYKGPTLLEALD-QINEPKRPSDKPLRLPLQ 239 (447)
T ss_pred HHHHHHHHHHHHHHHHcCCCcc--cceEEEEeccccccccccccC--CcccchHHHHHHHh-hcCCCccccCCCcEEEEE
Confidence 6788899999999998887643 368999999999866432221 11212246888774 477777778999999999
Q ss_pred eeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCc--CCC
Q 006068 269 MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKP 344 (662)
Q Consensus 269 ~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~ 344 (662)
+++..++.|+++.|||.+|+|++||.|.+.+.+ ...+|++|... ..++++|.|||.|++ .++ .++
T Consensus 240 ~v~~~~g~G~vv~G~V~~G~l~~Gd~v~~~P~~-------~~~~VksI~~~----~~~v~~a~aGd~v~i~l~~~~~~~i 308 (447)
T PLN00043 240 DVYKIGGIGTVPVGRVETGVIKPGMVVTFGPTG-------LTTEVKSVEMH----HESLQEALPGDNVGFNVKNVAVKDL 308 (447)
T ss_pred EEEEeCCcEEEEEEEEECCEEeeCCEEEEcCCC-------CEEEEEEEEEC----CeEeCEecCCCeEEEEECCCCHhhC
Confidence 999999999999999999999999999998753 45789999765 368999999999876 465 468
Q ss_pred ccCceeeecC
Q 006068 345 SIGHTVANTE 354 (662)
Q Consensus 345 ~~GdTl~~~~ 354 (662)
..|++||+..
T Consensus 309 ~rG~vl~~~~ 318 (447)
T PLN00043 309 KRGYVASNSK 318 (447)
T ss_pred CCccEEccCC
Confidence 8999999864
No 29
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=100.00 E-value=1.7e-39 Score=358.26 Aligned_cols=281 Identities=26% Similarity=0.347 Sum_probs=237.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC-------------------ccccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
+...||+++||+|||||||+++|++.+|.... ..+++|+.++|++||+|++.....++|++
T Consensus 5 k~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~ 84 (446)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (446)
T ss_pred CceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCC
Confidence 34679999999999999999999998874221 12579999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCch-------hhHHHHHHHHHHcCCCc-EEEeccCCCC--CCCH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLRP-ILLLNKVDRP--AVSE 188 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~-------~qt~~~l~~~~~~~lp~-IvviNKiD~~--~~~~ 188 (662)
+.++|||||||.+|..++..++..+|++||||||.+|++ +||+++|..+..+|+|. |||+||||++ +++.
T Consensus 85 ~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~~~~~~~~ 164 (446)
T PTZ00141 85 YYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDDKTVNYSQ 164 (446)
T ss_pred eEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEccccccchhhH
Confidence 999999999999999999999999999999999999984 89999999999999996 5899999953 4667
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEE
Q 006068 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVT 268 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~ 268 (662)
.+++++.+++.+++..+|+..+ ++|++++||.+|.+..+..+. ..+.+ ...|+++|. .++.|..+.+.||+++|.
T Consensus 165 ~~~~~i~~~i~~~l~~~g~~~~--~~~~ipiSa~~g~ni~~~~~~-~~Wy~-G~tL~~~l~-~~~~~~~~~~~p~r~~I~ 239 (446)
T PTZ00141 165 ERYDEIKKEVSAYLKKVGYNPE--KVPFIPISGWQGDNMIEKSDN-MPWYK-GPTLLEALD-TLEPPKRPVDKPLRLPLQ 239 (446)
T ss_pred HHHHHHHHHHHHHHHhcCCCcc--cceEEEeecccCCCcccCCCC-Ccccc-hHHHHHHHh-CCCCCCcCCCCCeEEEEE
Confidence 8889999999999988887543 489999999999866542221 11222 246888874 456677777899999999
Q ss_pred eeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CC
Q 006068 269 MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KP 344 (662)
Q Consensus 269 ~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~ 344 (662)
+++..++.|+++.|+|.+|+|+.||.|.+.|.+ ...+|++|...+ .++++|.|||.|++ .+++ ++
T Consensus 240 ~v~~v~g~Gtvv~G~V~~G~l~~Gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~aG~~v~i~L~~i~~~~v 308 (446)
T PTZ00141 240 DVYKIGGIGTVPVGRVETGILKPGMVVTFAPSG-------VTTEVKSVEMHH----EQLAEAVPGDNVGFNVKNVSVKDI 308 (446)
T ss_pred EEEecCCceEEEEEEEEcceEecCCEEEEccCC-------cEEEEEEEEecC----cccCEECCCCEEEEEECCCCHHHc
Confidence 999999999999999999999999999999753 457899998663 58999999999877 4543 58
Q ss_pred ccCceeeecC
Q 006068 345 SIGHTVANTE 354 (662)
Q Consensus 345 ~~GdTl~~~~ 354 (662)
..||+||+++
T Consensus 309 ~rG~vl~~~~ 318 (446)
T PTZ00141 309 KRGYVASDSK 318 (446)
T ss_pred CCceEEecCC
Confidence 8999999864
No 30
>PRK12736 elongation factor Tu; Reviewed
Probab=100.00 E-value=3.2e-39 Score=352.27 Aligned_cols=279 Identities=32% Similarity=0.434 Sum_probs=234.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCC---C-CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGAD---I-PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~---~-~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
++.+||+++||+|||||||+++|++..+.. . ...+++|..+.|++||+|++.....+.+++.+++|||||||.+|.
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHH
Confidence 457899999999999999999999754321 1 112378999999999999999988888889999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+.+++..+|++++|||+.+|+++||++++..+...++|. |+|+||+|+.+ +.+..+.+.+++.+++...++..+
T Consensus 90 ~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~-~~~~~~~i~~~i~~~l~~~~~~~~-- 166 (394)
T PRK12736 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVD-DEELLELVEMEVRELLSEYDFPGD-- 166 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHhCCCcC--
Confidence 99999999999999999999999999999999999999994 68899999953 223334456678888887776433
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~G 292 (662)
.+|++++||++|.... ..+..++..|+++|.+++|.|..+.++||+++|++++++++.|.+++|||.+|+|+.|
T Consensus 167 ~~~ii~vSa~~g~~~~------~~~~~~i~~Ll~~l~~~lp~~~~~~~~p~r~~I~~~~~~~g~G~Vv~G~v~~G~l~~g 240 (394)
T PRK12736 167 DIPVIRGSALKALEGD------PKWEDAIMELMDAVDEYIPTPERDTDKPFLMPVEDVFTITGRGTVVTGRVERGTVKVG 240 (394)
T ss_pred CccEEEeeccccccCC------CcchhhHHHHHHHHHHhCCCCCCCCCCCeEEEEEEEEecCCcEEEEEEEEeecEEecC
Confidence 4789999999984211 1122478999999999999998888999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCccCceeeecC
Q 006068 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTE 354 (662)
Q Consensus 293 d~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~GdTl~~~~ 354 (662)
|.|++.+.+. ....+|++|+.. +.++++|.|||++++ .|++ ++..||+||+++
T Consensus 241 d~v~i~p~~~-----~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~~G~vl~~~~ 297 (394)
T PRK12736 241 DEVEIVGIKE-----TQKTVVTGVEMF----RKLLDEGQAGDNVGVLLRGVDRDEVERGQVLAKPG 297 (394)
T ss_pred CEEEEecCCC-----CeEEEEEEEEEC----CEEccEECCCCEEEEEECCCcHHhCCcceEEecCC
Confidence 9999986421 246789999864 368999999999866 7774 688999999875
No 31
>PRK12735 elongation factor Tu; Reviewed
Probab=100.00 E-value=1.4e-38 Score=347.45 Aligned_cols=281 Identities=31% Similarity=0.411 Sum_probs=236.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
++..||+++||+|||||||+++|++...... ...+.+|..+.|++||+|++.....+.+++.+++|||||||.+|.
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~ 89 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYV 89 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHH
Confidence 4568999999999999999999998543211 112478999999999999999999998889999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+.+++..+|+++||+|+.+|++.||++++..+...++|.| +|+||+|+.+ +.+..+.+.+++.+++..+++..+
T Consensus 90 ~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~-~~~~~~~~~~ei~~~l~~~~~~~~-- 166 (396)
T PRK12735 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGD-- 166 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcc-hHHHHHHHHHHHHHHHHHcCCCcC--
Confidence 999999999999999999999999999999999999999976 5799999954 333445556678888877765432
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~G 292 (662)
++|++++||++|++... ...+..++..|+++|.+.+|.|..+.++||+++|.++++.++.|.+++|+|.+|+|++|
T Consensus 167 ~~~ii~~Sa~~g~n~~~----~~~w~~~~~~Ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~Gtvv~G~v~~G~i~~g 242 (396)
T PRK12735 167 DTPIIRGSALKALEGDD----DEEWEAKILELMDAVDSYIPEPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIVKVG 242 (396)
T ss_pred ceeEEecchhccccCCC----CCcccccHHHHHHHHHhcCCCCCccCCCCeEEEEEEEEecCCceEEEEEEEEecEEeCC
Confidence 47899999999985321 22334588999999999999888888999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCccCceeeecC
Q 006068 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTE 354 (662)
Q Consensus 293 d~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~GdTl~~~~ 354 (662)
|.|++.+.+ .....+|++|... ..++++|.|||+|++ .|++ +++.|++||+++
T Consensus 243 d~v~i~p~~-----~~~~~~VksI~~~----~~~v~~a~aGd~v~l~L~~i~~~~i~rG~vl~~~~ 299 (396)
T PRK12735 243 DEVEIVGIK-----ETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGTKREDVERGQVLAKPG 299 (396)
T ss_pred CEEEEecCC-----CCeEEEEEEEEEC----CeEeCEECCCCEEEEEeCCCcHHHCCcceEEEcCC
Confidence 999998742 1246789998865 368999999999887 6764 688999999975
No 32
>PLN03126 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.2e-38 Score=352.78 Aligned_cols=286 Identities=29% Similarity=0.385 Sum_probs=238.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
+..+||+++||+|||||||+++|++..+... ....++|..+.|+++|+|++.....+.+++++++|||||||.+|.
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~ 158 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYV 158 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHH
Confidence 4578999999999999999999998776421 123578999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.++..++..+|+++|||||.+|+++||+++|..+..+++| +|+++||+|+.+ ..+..+.+.+++.+++..+|+...
T Consensus 159 ~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~-~~~~~~~i~~~i~~~l~~~g~~~~-- 235 (478)
T PLN03126 159 KNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVD-DEELLELVELEVRELLSSYEFPGD-- 235 (478)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccC-HHHHHHHHHHHHHHHHHhcCCCcC--
Confidence 9999999999999999999999999999999999999999 567899999964 233455566788888888887542
Q ss_pred CccEEEcccccCccCCc----cCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeece
Q 006068 213 DFPVLYASAKEGWASST----FTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~----~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~ 288 (662)
++|++++||.+|++... +......+..++..|+++|.++.|.|..+.+.||+++|.++++.++.|.++.|+|.+|+
T Consensus 236 ~~~~vp~Sa~~g~n~~~~~~~~~~g~~~wy~~i~~Ll~~l~~~~~~p~r~~~~p~r~~I~~vf~v~g~GtVv~G~V~sG~ 315 (478)
T PLN03126 236 DIPIISGSALLALEALMENPNIKRGDNKWVDKIYELMDAVDSYIPIPQRQTDLPFLLAVEDVFSITGRGTVATGRVERGT 315 (478)
T ss_pred cceEEEEEccccccccccccccccCCCchhhhHHHHHHHHHHhCCCCCCccccceeeEEEEEEEeCCceEEEEEEEEcCe
Confidence 58999999999974321 00001112235788999999888878777889999999999999999999999999999
Q ss_pred eccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCccCceeeecCC
Q 006068 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTEV 355 (662)
Q Consensus 289 l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~GdTl~~~~~ 355 (662)
|++||.|.+.+.+ .....+|++|+.++ .++++|.|||.|++ .+++ ++..|++||+++.
T Consensus 316 i~~Gd~v~i~p~~-----~~~~~~VksI~~~~----~~v~~A~aG~~v~l~L~~i~~~di~rG~VL~~~~~ 377 (478)
T PLN03126 316 VKVGETVDIVGLR-----ETRSTTVTGVEMFQ----KILDEALAGDNVGLLLRGIQKADIQRGMVLAKPGS 377 (478)
T ss_pred EecCCEEEEecCC-----CceEEEEEEEEECC----eECCEEeCCceeeeeccCCcHHHcCCccEEecCCC
Confidence 9999999998643 12457899998663 68999999999887 5664 5889999999753
No 33
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=100.00 E-value=1.8e-38 Score=346.69 Aligned_cols=279 Identities=29% Similarity=0.391 Sum_probs=232.0
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcC---CC-CCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCG---AD-IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g---~~-~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
++.+||+++||+|||||||+++|++... .. ....+.+|..++|++||+|++.....+.+++.+++|||||||.+|.
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~ 89 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYV 89 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHH
Confidence 4578999999999999999999986532 11 1123578999999999999999998888888999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+.+++..+|+++||+|+.+|+..||++++..+...++|.+ +++||+|+.+. .+..+.+.+++.+++...++...
T Consensus 90 ~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~-~~~~~~~~~~i~~~l~~~~~~~~-- 166 (394)
T TIGR00485 90 KNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDD-EELLELVEMEVRELLSEYDFPGD-- 166 (394)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCH-HHHHHHHHHHHHHHHHhcCCCcc--
Confidence 999999999999999999999999999999999999999976 58999999542 22334455678888877765432
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~G 292 (662)
.+|++++||++|.... ..+..++..|+++|.+.+|.|..+.++||+++|++++++++.|.+++|||.+|+|++|
T Consensus 167 ~~~ii~vSa~~g~~g~------~~~~~~~~~ll~~l~~~~~~~~~~~~~p~r~~V~~vf~~~g~G~Vv~G~v~~G~l~~g 240 (394)
T TIGR00485 167 DTPIIRGSALKALEGD------AEWEAKILELMDAVDEYIPTPERETDKPFLMPIEDVFSITGRGTVVTGRVERGIVKVG 240 (394)
T ss_pred CccEEECccccccccC------CchhHhHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEEeeEEeCC
Confidence 4799999999885211 1223467899999998899888888899999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCc--CCCccCceeeecC
Q 006068 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTE 354 (662)
Q Consensus 293 d~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~GdTl~~~~ 354 (662)
|.|.+.+.. . ....+|++|+.. ..++++|.|||+|++ .|+ ++++.||+||+++
T Consensus 241 d~v~i~p~~-~----~~~~~VksI~~~----~~~~~~a~aGd~v~l~l~~i~~~~i~rG~vl~~~~ 297 (394)
T TIGR00485 241 EEVEIVGLK-D----TRKTTVTGVEMF----RKELDEGRAGDNVGLLLRGIKREEIERGMVLAKPG 297 (394)
T ss_pred CEEEEecCC-C----CcEEEEEEEEEC----CeEEEEECCCCEEEEEeCCccHHHCCccEEEecCC
Confidence 999988642 1 145789999875 368899999999976 676 3688999999874
No 34
>PRK00049 elongation factor Tu; Reviewed
Probab=100.00 E-value=2.6e-38 Score=345.12 Aligned_cols=281 Identities=30% Similarity=0.428 Sum_probs=236.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCC---CC-CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGA---DI-PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~---~~-~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
+...||+++||+|||||||+++|++.... .. .....+|+.++|++||+|++.....+.+++.+++|+|||||.+|.
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~ 89 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYV 89 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHH
Confidence 45789999999999999999999985321 11 122478999999999999999998888889999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+..++..+|++++|||+.+|+++||++++..+...++|.+ +++||+|+.+ +.+.++.+.+++.+++..+++..+
T Consensus 90 ~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~-~~~~~~~~~~~i~~~l~~~~~~~~-- 166 (396)
T PRK00049 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD-DEELLELVEMEVRELLSKYDFPGD-- 166 (396)
T ss_pred HHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcc-hHHHHHHHHHHHHHHHHhcCCCcc--
Confidence 999999999999999999999999999999999999999986 5899999964 333445566788888888776432
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~G 292 (662)
.+|++++||++|++.. ....+..++..|+++|.+.+|.|....++||+++|.++++.++.|.++.|+|.+|++++|
T Consensus 167 ~~~iv~iSa~~g~~~~----~~~~w~~~~~~ll~~l~~~~~~p~~~~~~p~r~~I~~~f~v~g~G~Vv~G~v~~G~i~~g 242 (396)
T PRK00049 167 DTPIIRGSALKALEGD----DDEEWEKKILELMDAVDSYIPTPERAIDKPFLMPIEDVFSISGRGTVVTGRVERGIIKVG 242 (396)
T ss_pred CCcEEEeecccccCCC----CcccccccHHHHHHHHHhcCCCCCCCCCCCeEEEEEEEEeeCCceEEEEEEEeeeEEecC
Confidence 4789999999987421 112233478999999999999888888999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCc--CCCccCceeeecC
Q 006068 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTE 354 (662)
Q Consensus 293 d~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~GdTl~~~~ 354 (662)
|.|.+.+... ....+|++|...+ .++++|.|||+|++ .|+ +++..|++||+++
T Consensus 243 d~v~i~p~~~-----~~~~~VksI~~~~----~~~~~a~~Gd~v~l~l~~i~~~~i~~G~vl~~~~ 299 (396)
T PRK00049 243 EEVEIVGIRD-----TQKTTVTGVEMFR----KLLDEGQAGDNVGALLRGIKREDVERGQVLAKPG 299 (396)
T ss_pred CEEEEeecCC-----CceEEEEEEEECC----cEeCEEcCCCEEEEEeCCCCHHHCCcceEEecCC
Confidence 9999986421 1467899998653 68999999999877 676 4688999999975
No 35
>PLN03127 Elongation factor Tu; Provisional
Probab=100.00 E-value=1.1e-37 Score=343.42 Aligned_cols=286 Identities=29% Similarity=0.397 Sum_probs=232.2
Q ss_pred CCCCCccEEEEEeCCCCCHHHHHHHHHHhc---CCCC-CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc
Q 006068 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQC---GADI-PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (662)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~---g~~~-~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~ 130 (662)
...+...||+++||+|||||||+++|++.. |... .....+|..++|++||+|++.....+++++.+++|+|||||.
T Consensus 56 ~~~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~ 135 (447)
T PLN03127 56 TRTKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHA 135 (447)
T ss_pred hcCCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCcc
Confidence 334567899999999999999999997542 2111 111268999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 131 dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
+|...+..++..+|+++||||+.+|+++||++++..+...++|. |+++||+|+.+ +.+..+.+.+++.+++..+++..
T Consensus 136 ~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~-~~~~~~~i~~~i~~~l~~~~~~~ 214 (447)
T PLN03127 136 DYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVD-DEELLELVEMELRELLSFYKFPG 214 (447)
T ss_pred chHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCC-HHHHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999995 68899999964 22333444557777777666543
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeecee
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVV 289 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l 289 (662)
+ .+|++++||.++....+.. ..+.++..|+++|.+++|.|..+.++||+++|.+++..++.|.++.|+|.+|+|
T Consensus 215 ~--~vpiip~Sa~sa~~g~n~~----~~~~~i~~Ll~~l~~~lp~p~r~~~~pfr~~I~~vf~v~g~GtVvtG~v~~G~i 288 (447)
T PLN03127 215 D--EIPIIRGSALSALQGTNDE----IGKNAILKLMDAVDEYIPEPVRVLDKPFLMPIEDVFSIQGRGTVATGRVEQGTI 288 (447)
T ss_pred C--cceEEEeccceeecCCCcc----cccchHHHHHHHHHHhCCCCCcccccceEeeEEEEEEcCCceEEEEEEEEccEE
Confidence 2 4789999987654221110 112368899999999999998888899999999999999999999999999999
Q ss_pred ccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCccCceeeecC
Q 006068 290 SVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTE 354 (662)
Q Consensus 290 ~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~GdTl~~~~ 354 (662)
++||.|.+.+.+..+ ....+|++|..+. .++++|.|||.|++ .|++ ++..||+||+++
T Consensus 289 ~~Gd~v~i~p~~~~g---~~~~~VksI~~~~----~~v~~a~aGd~v~l~L~~i~~~~i~rG~Vl~~~~ 350 (447)
T PLN03127 289 KVGEEVEIVGLRPGG---PLKTTVTGVEMFK----KILDQGQAGDNVGLLLRGLKREDVQRGQVICKPG 350 (447)
T ss_pred ecCCEEEEcccCCCC---cEEEEEEEEEEEC----cEeCEEcCCCEEEEEeCCCCHHHCCCccEEecCC
Confidence 999999988653211 2467899998764 47999999999876 6764 688999999873
No 36
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=100.00 E-value=3.6e-38 Score=348.09 Aligned_cols=282 Identities=31% Similarity=0.413 Sum_probs=237.5
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC-------------------ccccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
+...||+++||+|||||||+++|++..|.... ..+++|+.++|+++|+|++.....+.+++
T Consensus 4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~ 83 (425)
T PRK12317 4 KPHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK 83 (425)
T ss_pred CCEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC
Confidence 45689999999999999999999998875321 24689999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCC--CchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGE--GPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVE 195 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~--G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~ 195 (662)
++++|||||||.+|...+..+++.+|++|+|||+.+ ++..++.+++..+...++| +++|+||+|+.+++.+++.++.
T Consensus 84 ~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~~~~~~ 163 (425)
T PRK12317 84 YYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYDEKRYEEVK 163 (425)
T ss_pred eEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEccccccccHHHHHHHH
Confidence 999999999999999998888999999999999999 9999999999999999975 7889999999776666667777
Q ss_pred HHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecc
Q 006068 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFY 275 (662)
Q Consensus 196 ~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~ 275 (662)
+++.+++...++..+ .+|++++||++|.+..+.... ..|.....|+++| +.+|.|..+.+.||+++|.+++..++
T Consensus 164 ~~i~~~l~~~g~~~~--~~~ii~iSA~~g~gi~~~~~~--~~wy~g~~L~~~l-~~~~~~~~~~~~p~r~~i~~~~~~~g 238 (425)
T PRK12317 164 EEVSKLLKMVGYKPD--DIPFIPVSAFEGDNVVKKSEN--MPWYNGPTLLEAL-DNLKPPEKPTDKPLRIPIQDVYSISG 238 (425)
T ss_pred HHHHHHHHhhCCCcC--cceEEEeecccCCCccccccC--CCcccHHHHHHHH-hcCCCCccccCCCcEEEEEEEEeeCC
Confidence 888888877776432 368999999999976554321 1122236788886 55788877788999999999999999
Q ss_pred cceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCccCceee
Q 006068 276 LGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVA 351 (662)
Q Consensus 276 ~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~GdTl~ 351 (662)
.|+++.|+|.+|+|++||.|.+.|.+ ...+|++|.... .++++|.|||.|++ .+++ ++..||+||
T Consensus 239 ~G~vv~G~v~~G~v~~Gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~~~~~~i~rG~vl~ 307 (425)
T PRK12317 239 VGTVPVGRVETGVLKVGDKVVFMPAG-------VVGEVKSIEMHH----EELPQAEPGDNIGFNVRGVGKKDIKRGDVCG 307 (425)
T ss_pred CeEEEEEEEeeccEecCCEEEECCCC-------CeEEEEEEEECC----cccCEECCCCeEEEEECCCCHHHccCccEec
Confidence 99999999999999999999999753 457899998653 58999999999876 4554 688999999
Q ss_pred ecCC
Q 006068 352 NTEV 355 (662)
Q Consensus 352 ~~~~ 355 (662)
+++.
T Consensus 308 ~~~~ 311 (425)
T PRK12317 308 HPDN 311 (425)
T ss_pred CCCC
Confidence 8754
No 37
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=100.00 E-value=1.4e-37 Score=340.49 Aligned_cols=276 Identities=25% Similarity=0.316 Sum_probs=225.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCC---------------------ccccccccccccccceeEeeeEEEEEecCee
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIP---------------------HERAMDSISLERERGITIASKVTGISWRENE 120 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~---------------------~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~ 120 (662)
||+|+||+|||||||+++||+.+|.... ..+++|+.++|++||+|++.....+.|++++
T Consensus 2 ~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~~ 81 (406)
T TIGR02034 2 RFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRK 81 (406)
T ss_pred eEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCeE
Confidence 7999999999999999999999885321 1358999999999999999999999999999
Q ss_pred EEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHHHHHH
Q 006068 121 LNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVF 199 (662)
Q Consensus 121 iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~~~v~ 199 (662)
++|||||||.+|...+..++..+|++||||||.+|+++||++++..+...++| +|+|+||+|+..++.+.+.++.+++.
T Consensus 82 ~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~~~~~~~~~i~~~~~ 161 (406)
T TIGR02034 82 FIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFENIKKDYL 161 (406)
T ss_pred EEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEecccccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987 56799999998766666677777777
Q ss_pred HHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceE
Q 006068 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRI 279 (662)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i 279 (662)
.++..+++. ++|++++||++|.+....... ..|.....|+++| +.++.|....+.||++.|..++...+.+.-
T Consensus 162 ~~~~~~~~~----~~~iipiSA~~g~ni~~~~~~--~~wy~g~tL~~~L-~~~~~~~~~~~~p~r~~i~~v~~~~~~~~g 234 (406)
T TIGR02034 162 AFAEQLGFR----DVTFIPLSALKGDNVVSRSES--MPWYSGPTLLEIL-ETVEVERDAQDLPLRFPVQYVNRPNLDFRG 234 (406)
T ss_pred HHHHHcCCC----CccEEEeecccCCCCcccccC--CCccchhHHHHHH-HhcCCCCCcCCCCcccceEEEeecCCCcEE
Confidence 777766653 468999999999866543221 1222334566665 446777667789999999887654332233
Q ss_pred EEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc--CcCCCccCceeeecCC
Q 006068 280 LTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GMTKPSIGHTVANTEV 355 (662)
Q Consensus 280 ~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~GdTl~~~~~ 355 (662)
..|+|.+|+|++||.|.+.|.+ ...+|++|..+. .++++|.|||.|++. +.+++..||+||+++.
T Consensus 235 ~~G~v~~G~l~~gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~~G~~v~l~l~~~~~i~rG~vl~~~~~ 301 (406)
T TIGR02034 235 YAGTIASGSVHVGDEVVVLPSG-------RSSRVARIVTFD----GDLEQARAGQAVTLTLDDEIDISRGDLLAAADS 301 (406)
T ss_pred EEEEEecceeecCCEEEEeCCC-------cEEEEEEEEECC----cccCEeCCCCEEEEEECCccccCCccEEEcCCC
Confidence 6799999999999999998753 468999998664 479999999999874 3356889999999865
No 38
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=100.00 E-value=2.8e-37 Score=340.98 Aligned_cols=282 Identities=29% Similarity=0.390 Sum_probs=235.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC-------------------ccccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
+..+||+++||+|||||||+++|++..|.... ..+++|..+.|+++|+|++.....+.+++
T Consensus 5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~ 84 (426)
T TIGR00483 5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK 84 (426)
T ss_pred CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence 45789999999999999999999998774221 13579999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC---chhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG---PLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEV 194 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G---~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei 194 (662)
+.++|||||||.+|...+..+++.+|++|||||+.++ ...++.+++..+...+++ +|||+||+|+.+++.+++.++
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~~~~~~~~~ 164 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDSVNYDEEEFEAI 164 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhccCccHHHHHHH
Confidence 9999999999999999999999999999999999999 788999888888888865 678999999987677777778
Q ss_pred HHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeec
Q 006068 195 ESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDF 274 (662)
Q Consensus 195 ~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~ 274 (662)
.+++.+++...++... .+|++++||++|.+..+..... .+.. ...|+++|. .+++|..+.++||+++|.+++..+
T Consensus 165 ~~ei~~~~~~~g~~~~--~~~~i~iSA~~g~ni~~~~~~~-~w~~-g~~l~~~l~-~~~~~~~~~~~p~r~~i~~v~~~~ 239 (426)
T TIGR00483 165 KKEVSNLIKKVGYNPD--TVPFIPISAWNGDNVIKKSENT-PWYK-GKTLLEALD-ALEPPEKPTDKPLRIPIQDVYSIT 239 (426)
T ss_pred HHHHHHHHHHcCCCcc--cceEEEeeccccccccccccCC-cccc-chHHHHHHh-cCCCCCCccCCCcEEEEEEEEecC
Confidence 8888888887776432 3689999999998665433221 1122 346888884 577777777899999999999999
Q ss_pred ccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCc--CCCccCcee
Q 006068 275 YLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTV 350 (662)
Q Consensus 275 ~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~GdTl 350 (662)
+.|+++.|+|.+|+|+.||.|.+.+.+ ...+|++|.... .++++|.|||+|++ .++ ++++.||+|
T Consensus 240 g~G~vv~G~v~~G~i~~gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~i~~~~i~rG~vl 308 (426)
T TIGR00483 240 GVGTVPVGRVETGVLKPGDKVVFEPAG-------VSGEVKSIEMHH----EQIEQAEPGDNIGFNVRGVSKKDIRRGDVC 308 (426)
T ss_pred CCeEEEEEEEccceeecCCEEEECCCC-------cEEEEEEEEECC----cccCEEcCCCEEEEEECCCChhhcccceEE
Confidence 999999999999999999999998753 457899998664 58999999999877 565 368899999
Q ss_pred eecCC
Q 006068 351 ANTEV 355 (662)
Q Consensus 351 ~~~~~ 355 (662)
++++.
T Consensus 309 ~~~~~ 313 (426)
T TIGR00483 309 GHPDN 313 (426)
T ss_pred ecCCC
Confidence 98754
No 39
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-37 Score=308.59 Aligned_cols=283 Identities=31% Similarity=0.421 Sum_probs=237.1
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcC----CCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCG----ADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g----~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
+...||+.|||+|||||||+.++..... .....-.-.|..++|++|||||......++..+..+-.+|||||+||.
T Consensus 10 kphVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYv 89 (394)
T COG0050 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYV 89 (394)
T ss_pred CCeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHH
Confidence 3467999999999999999999876543 122222335788999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+.......|++||||+|.+|+++||++++..+++.|+|. ++|+||+|+.+ +++.++.+..++.+|+..++++.+
T Consensus 90 KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvd-d~ellelVemEvreLLs~y~f~gd-- 166 (394)
T COG0050 90 KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVD-DEELLELVEMEVRELLSEYGFPGD-- 166 (394)
T ss_pred HHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccC-cHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 99999999999999999999999999999999999999986 57899999965 567777888899999999998744
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~G 292 (662)
+.|++..||+..... ...+...+.+|++++-+++|.|.++.+.||.+.|-+++...+.|.+++|||.+|+|+.|
T Consensus 167 ~~Pii~gSal~ale~------~~~~~~~i~eLm~avd~yip~Per~~dkPflmpvEdvfsIsgrgtvvtGrVeRG~lkvg 240 (394)
T COG0050 167 DTPIIRGSALKALEG------DAKWEAKIEELMDAVDSYIPTPERDIDKPFLMPVEDVFSISGRGTVVTGRVERGILKVG 240 (394)
T ss_pred CcceeechhhhhhcC------CcchHHHHHHHHHHHHhcCCCCCCcccccccccceeeEEEcCceeEEEEEEeeeeeccC
Confidence 579999998865421 11233468999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCc--CCCccCceeeecCCCCC
Q 006068 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTEVTTA 358 (662)
Q Consensus 293 d~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~GdTl~~~~~~~~ 358 (662)
+.+.+.... ...+..++.+..| ++..+++.|||-|.+ .|. +++..|..|+.++...+
T Consensus 241 ~eveivG~~-----~~~kttvtgvemf----rk~ld~~~AGdnvg~llRg~~r~~veRGqvLakpgsi~p 301 (394)
T COG0050 241 EEVEIVGIK-----ETQKTTVTGVEMF----RKLLDEGQAGDNVGVLLRGVKREDVERGQVLAKPGSIKP 301 (394)
T ss_pred CEEEEeccc-----ccceeEEEhHHHH----HHHHhccccCCCcceEEEeccccceecceEeecCCcccc
Confidence 999998543 1244566666544 357899999999765 455 47889999998875433
No 40
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=100.00 E-value=2e-36 Score=349.34 Aligned_cols=338 Identities=23% Similarity=0.306 Sum_probs=254.5
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
.+.++|+|+||+|||||||+++|.... ......+|+|+......+.|+++.++|||||||.+|...+.
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~------------v~~~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~F~~m~~ 355 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTN------------VAAGEAGGITQHIGAYQVETNGGKITFLDTPGHEAFTAMRA 355 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCC------------ccccccCceeeeccEEEEEECCEEEEEEECCCCccchhHHH
Confidence 467899999999999999999997642 11223579999998889999999999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc--CCCcc
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE--QLDFP 215 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~--~~~~P 215 (662)
++++.+|++|||||+.+|+++||.++|..+...++|+|||+||+|++++++++ +..++.+ .+...+ ..++|
T Consensus 356 rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~~e~---V~~eL~~----~~~~~e~~g~~vp 428 (787)
T PRK05306 356 RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDR---VKQELSE----YGLVPEEWGGDTI 428 (787)
T ss_pred hhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccCHHH---HHHHHHH----hcccHHHhCCCce
Confidence 99999999999999999999999999999999999999999999998776533 3332222 111111 12478
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC--CCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV--PPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l--P~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd 293 (662)
++++||++|. |+++|+++|.... ..+..+++.|+.++|+++..+++.|.+++++|++|+|+.||
T Consensus 429 ~vpvSAktG~--------------GI~eLle~I~~~~e~~~l~~~~~~~~~g~V~es~~dkg~G~v~~v~V~sGtLk~Gd 494 (787)
T PRK05306 429 FVPVSAKTGE--------------GIDELLEAILLQAEVLELKANPDRPARGTVIEAKLDKGRGPVATVLVQNGTLKVGD 494 (787)
T ss_pred EEEEeCCCCC--------------CchHHHHhhhhhhhhhhcccCCCCCcEEEEEEEEEcCCCeEEEEEEEecCeEecCC
Confidence 9999999999 9999999987432 23445678899999999999999999999999999999999
Q ss_pred EEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCC-ccCceeeecCCC----------------
Q 006068 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEVT---------------- 356 (662)
Q Consensus 294 ~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~~~~~---------------- 356 (662)
.|.+.+ ...+|..|+ +.+..++++|.|||+|.|.||+++ .+||||+...+.
T Consensus 495 ~vv~g~---------~~gkVr~m~---~~~~~~v~~A~pGd~V~I~gl~~~p~~Gd~l~~~~~e~~a~~~~~~r~~~~~~ 562 (787)
T PRK05306 495 IVVAGT---------TYGRVRAMV---DDNGKRVKEAGPSTPVEILGLSGVPQAGDEFVVVEDEKKAREIAEYRQEKARE 562 (787)
T ss_pred EEEECC---------cEEEEEEEE---CCCCCCCCEEcCCCeEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 998852 234665555 444568999999999999999998 899999843221
Q ss_pred --------CCCCCCc--CCCC---eeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-----------
Q 006068 357 --------TALPTIE--LDPP---TISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG----------- 412 (662)
Q Consensus 357 --------~~l~~~~--~~~P---~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~----------- 412 (662)
..|..+. +..+ .+.+.+.+... .+.+.|.+.|.++..+++.+++-..
T Consensus 563 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~iikad~~---------Gs~eai~~~l~~l~~~~v~~~i~~~~vG~it~~Dv~ 633 (787)
T PRK05306 563 KKLARQQRVSLENLFEQMKEGEVKELNLIIKADVQ---------GSVEALKDSLEKLSTDEVKVNIIHSGVGAITESDVT 633 (787)
T ss_pred HHhhhccccCHHHhhhhhhcCCceEEEEEEEeCCc---------chHHHHHHHHHhhcccCCceEEEeeccCCCCHHHHH
Confidence 1122221 1112 46777776553 5678999999999999999988541
Q ss_pred ---CCCeEEEEecChhhHHHHHHHHHhcCeEEEEeCCEEEEEE
Q 006068 413 ---MAETYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKT 452 (662)
Q Consensus 413 ---~~~~~~v~G~GeLhL~vl~e~Lrreg~ev~vs~P~V~yrE 452 (662)
.++. +|.|.+----.-+....+++|+++... .|+|+=
T Consensus 634 la~~~~a-~ii~Fnv~~~~~~~~~a~~~~v~i~~~--~iIY~l 673 (787)
T PRK05306 634 LAAASNA-IIIGFNVRPDAKARKLAEQEGVDIRYY--SIIYDL 673 (787)
T ss_pred HHHhcCC-EEEEEcCCCCHHHHHHHHHcCCEEEEe--ChHHHH
Confidence 1233 334444322222233334557776654 456653
No 41
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-38 Score=315.70 Aligned_cols=286 Identities=30% Similarity=0.416 Sum_probs=239.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhc---C-CCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQC---G-ADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~---g-~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
+...||+-|||+|||||||.-++.+-. | +....-.-.|..++|+.|||||......++...+++--+|||||+||.
T Consensus 52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYI 131 (449)
T KOG0460|consen 52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYI 131 (449)
T ss_pred CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHH
Confidence 346799999999999999999987643 2 222222345899999999999999888888889999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+.......|++||||.|++|+++||++++..|++.|++. +|++||.|..+ +++.++-+.-++++++..+|++.+
T Consensus 132 KNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~-d~e~leLVEmE~RElLse~gf~Gd-- 208 (449)
T KOG0460|consen 132 KNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVD-DPEMLELVEMEIRELLSEFGFDGD-- 208 (449)
T ss_pred HHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccC-CHHHHHHHHHHHHHHHHHcCCCCC--
Confidence 99999999999999999999999999999999999999996 57899999953 555666677789999999998766
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~G 292 (662)
++||+.+||+...-.. .++.....+..|+|++-+|+|.|.++.+.||.+.|.+++..++.|+++.||+.+|+|++|
T Consensus 209 ~~PvI~GSAL~ALeg~----~peig~~aI~kLldavDsyip~P~R~~~~pFl~pie~vfsI~GRGTVvtGrlERG~lKkG 284 (449)
T KOG0460|consen 209 NTPVIRGSALCALEGR----QPEIGLEAIEKLLDAVDSYIPTPERDLDKPFLLPIEDVFSIPGRGTVVTGRLERGVLKKG 284 (449)
T ss_pred CCCeeecchhhhhcCC----CccccHHHHHHHHHHHhccCCCcccccCCCceeehhheeeecCCceEEEEEEeecccccC
Confidence 5899999998654211 122233468899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCccCceeeecCCCCCC
Q 006068 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANTEVTTAL 359 (662)
Q Consensus 293 d~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~GdTl~~~~~~~~l 359 (662)
+.+-+.+.+ +.-+..|+.|..|. ..+++|.|||-+++ .|++ +++.|..+|.++...+.
T Consensus 285 ~e~eivG~~-----~~lkttvtgiemF~----K~ld~a~AGDn~G~LlRGik~~dvkRGmvl~~pGsvk~~ 346 (449)
T KOG0460|consen 285 DEVEIVGHN-----KTLKTTVTGIEMFR----KSLDEAQAGDNLGALLRGIKREDVKRGMVLAKPGSVKPH 346 (449)
T ss_pred CEEEEeccC-----cceeeEeehHHHHH----HHHHhcccccceehhhhcCCHHHHhcccEEecCCccccc
Confidence 999998653 22456788887764 58999999999865 5664 79999999998875443
No 42
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=100.00 E-value=2.1e-36 Score=336.15 Aligned_cols=282 Identities=26% Similarity=0.324 Sum_probs=228.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC---------------------ccccccccccccccceeEeeeEEEEEe
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---------------------HERAMDSISLERERGITIASKVTGISW 116 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---------------------~~~v~D~~~~E~ergiTi~~~~~~~~~ 116 (662)
+...||+|+||+|||||||+++||+.+|.... ..+++|..++|++||+|++.....+.+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 34679999999999999999999999874321 125899999999999999999999999
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHH
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVE 195 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~ 195 (662)
++++++|||||||.+|...+..++..+|++||||||.+|++.||++++..+...+++ +|||+||+|+.+++.+.+.++.
T Consensus 105 ~~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~~~~~~~~~~~i~ 184 (474)
T PRK05124 105 EKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYSEEVFERIR 184 (474)
T ss_pred CCcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeeccccchhHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999975 5779999999776666677777
Q ss_pred HHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecc
Q 006068 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFY 275 (662)
Q Consensus 196 ~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~ 275 (662)
+++.+++..+++. ...|++++||++|.+........ .+..| ..|++. ++.+|.|....+.||++.|..++...+
T Consensus 185 ~~l~~~~~~~~~~---~~~~iipvSA~~g~ni~~~~~~~-~wy~G-~tLl~~-L~~i~~~~~~~~~p~r~~I~~v~~~~~ 258 (474)
T PRK05124 185 EDYLTFAEQLPGN---LDIRFVPLSALEGDNVVSQSESM-PWYSG-PTLLEV-LETVDIQRVVDAQPFRFPVQYVNRPNL 258 (474)
T ss_pred HHHHHHHHhcCCC---CCceEEEEEeecCCCcccccccc-cccch-hhHHHH-HhhcCCCCCCCCCCceeeEEEEEecCC
Confidence 7777776665531 14689999999999766543221 11223 457764 467777777778999999988765433
Q ss_pred cceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc--CcCCCccCceeeec
Q 006068 276 LGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GMTKPSIGHTVANT 353 (662)
Q Consensus 276 ~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~GdTl~~~ 353 (662)
..+-..|+|.+|+|+.||.|.+.|.+ ...+|++|+..+. ++++|.|||.|++. +..++..||+||++
T Consensus 259 ~~~g~~G~V~sG~l~~Gd~v~i~P~~-------~~~~VksI~~~~~----~v~~A~aG~~V~l~L~~~~~i~rG~VL~~~ 327 (474)
T PRK05124 259 DFRGYAGTLASGVVKVGDRVKVLPSG-------KESNVARIVTFDG----DLEEAFAGEAITLVLEDEIDISRGDLLVAA 327 (474)
T ss_pred cccceEEEEEeEEEecCCEEEEecCC-------ceEEEEEEEEcCc----cccCcCCCCEEEEEeCCccccCCccEEECC
Confidence 22235799999999999999999753 4678999987653 78999999999885 34568899999987
Q ss_pred CCC
Q 006068 354 EVT 356 (662)
Q Consensus 354 ~~~ 356 (662)
+.+
T Consensus 328 ~~~ 330 (474)
T PRK05124 328 DEA 330 (474)
T ss_pred CCC
Confidence 643
No 43
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=100.00 E-value=5.5e-35 Score=330.55 Aligned_cols=299 Identities=24% Similarity=0.305 Sum_probs=238.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCe-eEEEEeCCCCccchHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~-~iniIDTPGh~dF~~ev~ 137 (662)
+.++|+|+||+|||||||+++|.... ......+|+|+......+.|++. .++|||||||.+|...+.
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~------------v~~~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F~~~r~ 153 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTK------------VAQGEAGGITQHIGAYHVENEDGKMITFLDTPGHEAFTSMRA 153 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCC------------cccccCCceeecceEEEEEECCCcEEEEEECCCCcchhhHHH
Confidence 56799999999999999999998652 12223468999888888888665 999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc--CCCcc
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE--QLDFP 215 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~--~~~~P 215 (662)
++++.+|++|||||+.+|+++||.+++..+...++|+|+++||+|++++++++. .+.+. ..++..+ ..++|
T Consensus 154 rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~~e~v---~~~L~----~~g~~~~~~~~~~~ 226 (587)
T TIGR00487 154 RGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEANPDRV---KQELS----EYGLVPEDWGGDTI 226 (587)
T ss_pred hhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCCHHHH---HHHHH----HhhhhHHhcCCCce
Confidence 999999999999999999999999999999999999999999999987666433 22221 1221111 11367
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHh--hCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR--HVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~--~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd 293 (662)
++++||++|. |+++|+++|.. .++.+..+++.|+++.|+++.++++.|.+++++|++|+|++||
T Consensus 227 ~v~iSAktGe--------------GI~eLl~~I~~~~~~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~V~~GtL~~Gd 292 (587)
T TIGR00487 227 FVPVSALTGD--------------GIDELLDMILLQSEVEELKANPNGQASGVVIEAQLDKGRGPVATVLVQSGTLRVGD 292 (587)
T ss_pred EEEEECCCCC--------------ChHHHHHhhhhhhhhccccCCCCCCceeEEEEEEEeCCCcEEEEEEEEeCEEeCCC
Confidence 9999999999 99999999864 3445555678999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCC-ccCceeeecCCC----------------
Q 006068 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEVT---------------- 356 (662)
Q Consensus 294 ~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~~~~~---------------- 356 (662)
.|.+.+. ..||..|+..+| ..+++|.||++|.|.|++++ .+||+++..++.
T Consensus 293 ~iv~~~~---------~~kVr~l~~~~g---~~v~~a~~g~~v~i~Gl~~~p~aGd~~~~~~~e~~a~~~~~~r~~~~~~ 360 (587)
T TIGR00487 293 IVVVGAA---------YGRVRAMIDENG---KSVKEAGPSKPVEILGLSDVPAAGDEFIVFKDEKDARLVAEKRAGKLRQ 360 (587)
T ss_pred EEEECCC---------ccEEEEEECCCC---CCCCEECCCCEEEEeCCCCCCCCCCEEEEcCCHHHHHHHHHHHHHHHHH
Confidence 9988642 357888887665 46899999999999999986 789999742111
Q ss_pred --------CCCCCCcC-----CCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEe
Q 006068 357 --------TALPTIEL-----DPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIP 411 (662)
Q Consensus 357 --------~~l~~~~~-----~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~ 411 (662)
..+..+.. ..|.+.+.+++.+. .+.+.|.+.|.++..+++++++-.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~viikad~~---------Gs~eal~~~l~~~~~~~~~~~v~~ 419 (587)
T TIGR00487 361 KALSRSVKVTLDNLFEQIKEGELKELNIILKADVQ---------GSLEAIKNSLEKLNNEEVKVKVIH 419 (587)
T ss_pred HhhhhccccchhHhhhhhhccCCceEEEEEEeCCc---------chHHHHHHHHHhhcccCCeEEEEE
Confidence 11111111 23677777877654 577899999999999999998764
No 44
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=100.00 E-value=2.1e-35 Score=324.61 Aligned_cols=263 Identities=24% Similarity=0.326 Sum_probs=216.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe---------------c-----
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW---------------R----- 117 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~---------------~----- 117 (662)
+...||+++||+|||||||+.+|+.. -+|..++|++||+|++..++.+.+ .
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~---------~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGV---------KTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPD 102 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCC---------CcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccc
Confidence 34679999999999999999999965 236788999999999988876521 0
Q ss_pred -------------CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-chhhHHHHHHHHHHcCCC-cEEEeccCC
Q 006068 118 -------------ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-PLAQTKFVLAKALKYGLR-PILLLNKVD 182 (662)
Q Consensus 118 -------------~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-~~~qt~~~l~~~~~~~lp-~IvviNKiD 182 (662)
...++|||||||.+|...+..++..+|+++|||||.+| +++||++++..+..++++ +|||+||+|
T Consensus 103 ~~~~~~~~~~~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiD 182 (460)
T PTZ00327 103 NPPCPGCGHKMTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKID 182 (460)
T ss_pred ccccccccccccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEeccc
Confidence 24799999999999999999999999999999999997 899999999999999997 578999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCC
Q 006068 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAP 262 (662)
Q Consensus 183 ~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p 262 (662)
+. +.+...+..+++.+++..... ..+|++++||++|. |++.|+++|.+.+|.|..+.+.|
T Consensus 183 lv--~~~~~~~~~~ei~~~l~~~~~----~~~~iipVSA~~G~--------------nI~~Ll~~L~~~lp~~~r~~~~p 242 (460)
T PTZ00327 183 LV--KEAQAQDQYEEIRNFVKGTIA----DNAPIIPISAQLKY--------------NIDVVLEYICTQIPIPKRDLTSP 242 (460)
T ss_pred cc--CHHHHHHHHHHHHHHHHhhcc----CCCeEEEeeCCCCC--------------CHHHHHHHHHhhCCCCCCCCCCC
Confidence 95 345556667777777654322 24789999999998 99999999999999998888899
Q ss_pred ceeEEEeeee--------ecccceEEEEEEeeceeccCCEEEEeeccC----CCCcce----EEeEEEeEEeecCCceee
Q 006068 263 FQMLVTMMEK--------DFYLGRILTGRVSSGVVSVGDKVHGLRITD----SGTEKI----EEGKVTKLMKKKGTGMVL 326 (662)
Q Consensus 263 ~~~~V~~~~~--------~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~----~~~~~~----~~~kI~~i~~~~g~~~~~ 326 (662)
|+++|..++. +++.|.++.|+|.+|++++||.|.+.|.+. .+ +. ...+|++|+.. ..+
T Consensus 243 ~r~~Idr~F~V~~~g~~~~~~~GtVv~G~v~~G~l~~Gd~v~i~P~~~~~~~~g--~~~~~~~~~~VksI~~~----~~~ 316 (460)
T PTZ00327 243 PRMIVIRSFDVNKPGEDIENLKGGVAGGSILQGVLKVGDEIEIRPGIISKDSGG--EFTCRPIRTRIVSLFAE----NNE 316 (460)
T ss_pred cEEEEEEEEeecccCCcccCCceEEEEEEEeeceEecCCEEEEccCcccccccC--ccccccceEEEEEEEEC----CeE
Confidence 9999986653 345799999999999999999999997531 01 11 24689999865 368
Q ss_pred ecccCCCCEEEEc-----Cc--CCCccCceeeecCC
Q 006068 327 IDSAGAGDIISVA-----GM--TKPSIGHTVANTEV 355 (662)
Q Consensus 327 v~~a~AGdIvai~-----gl--~~~~~GdTl~~~~~ 355 (662)
+++|.|||.|+|. ++ +++..|++|++++.
T Consensus 317 v~~a~aG~~vai~l~ld~~v~~~dv~rG~Vl~~~~~ 352 (460)
T PTZ00327 317 LQYAVPGGLIGVGTTIDPTLTRADRLVGQVLGYPGK 352 (460)
T ss_pred CCEEcCCCEEEEEeccCCCcchhhcccccEEEcCCC
Confidence 9999999999884 33 25778999998753
No 45
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=100.00 E-value=2.4e-34 Score=327.69 Aligned_cols=252 Identities=27% Similarity=0.357 Sum_probs=216.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCccchHHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.|+++||+|||||||+++|++. .+|..++|++||+|++..+..+.. ++..++|||||||.+|...+..++
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~---------~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~fi~~m~~g~ 72 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGV---------NADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEKFLSNMLAGV 72 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCC---------CCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHHHHHHHHHHh
Confidence 5899999999999999999753 247788999999999998887766 467899999999999999999999
Q ss_pred hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEc
Q 006068 141 GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYA 219 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~ 219 (662)
..+|++++|||+.+|+++||++++..+...++|. |||+||+|+. +.+++.++.+++.+++...++. ..|++++
T Consensus 73 ~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv--~~~~~~~v~~ei~~~l~~~~~~----~~~ii~V 146 (614)
T PRK10512 73 GGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRV--DEARIAEVRRQVKAVLREYGFA----EAKLFVT 146 (614)
T ss_pred hcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccC--CHHHHHHHHHHHHHHHHhcCCC----CCcEEEE
Confidence 9999999999999999999999999999999996 6899999994 4455566777777777766553 3689999
Q ss_pred ccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEee
Q 006068 220 SAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLR 299 (662)
Q Consensus 220 SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~ 299 (662)
||++|. |+++|++.|.+. +.|....++||+++|..++..++.|++++|+|.+|+|++||.|.+.+
T Consensus 147 SA~tG~--------------gI~~L~~~L~~~-~~~~~~~~~~~rl~Id~vf~v~G~GtVvtGtv~sG~l~~Gd~v~i~p 211 (614)
T PRK10512 147 AATEGR--------------GIDALREHLLQL-PEREHAAQHRFRLAIDRAFTVKGAGLVVTGTALSGEVKVGDTLWLTG 211 (614)
T ss_pred eCCCCC--------------CCHHHHHHHHHh-hccccCcCCCceEEEEEEeccCCCeEEEEEEEecceEecCCEEEEcC
Confidence 999998 999999999765 45555578999999999999999999999999999999999999986
Q ss_pred ccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cC-cC--CCccCceeeecC
Q 006068 300 ITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG-MT--KPSIGHTVANTE 354 (662)
Q Consensus 300 ~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~g-l~--~~~~GdTl~~~~ 354 (662)
.+ ...+|++|+..+ .++++|.|||.|++ .| ++ ++..||+||+++
T Consensus 212 ~~-------~~~~VrsIq~~~----~~v~~a~aG~rval~l~g~~~~~~i~rGdvl~~~~ 260 (614)
T PRK10512 212 VN-------KPMRVRGLHAQN----QPTEQAQAGQRIALNIAGDAEKEQINRGDWLLADA 260 (614)
T ss_pred CC-------CcEEEEEEecCC----cCCCEEeCCCeEEEEecCCCChhhCCCcCEEeCCC
Confidence 43 457899988653 58999999999987 45 53 689999999764
No 46
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=100.00 E-value=2.2e-34 Score=332.03 Aligned_cols=278 Identities=27% Similarity=0.290 Sum_probs=226.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCC-------------C--------ccccccccccccccceeEeeeEEEEEecC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------P--------HERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------~--------~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
..||+|+||+|||||||+++|++..+... . ..+++|..++|++||+|++.....+.+++
T Consensus 24 ~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~~ 103 (632)
T PRK05506 24 LLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATPK 103 (632)
T ss_pred eeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccCC
Confidence 45899999999999999999999887432 1 12589999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHHHH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESL 197 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~~~ 197 (662)
.+++|||||||.+|...+..++..+|++|||||+.+|+++||++++..+...+++ +|||+||+|+.+++.+++.++.++
T Consensus 104 ~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~~~~~~~~~~~i~~~ 183 (632)
T PRK05506 104 RKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDLVDYDQEVFDEIVAD 183 (632)
T ss_pred ceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEecccccchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999875 567999999976666667777778
Q ss_pred HHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccc
Q 006068 198 VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLG 277 (662)
Q Consensus 198 v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G 277 (662)
+.+++..+++. ++|++++||++|.+..+..+.. .|.....|++.| +.++.|....++||++.|..++...+.+
T Consensus 184 i~~~~~~~~~~----~~~iipiSA~~g~ni~~~~~~~--~wy~g~tL~~~l-~~~~~~~~~~~~p~r~~i~~v~~~~~~~ 256 (632)
T PRK05506 184 YRAFAAKLGLH----DVTFIPISALKGDNVVTRSARM--PWYEGPSLLEHL-ETVEIASDRNLKDFRFPVQYVNRPNLDF 256 (632)
T ss_pred HHHHHHHcCCC----CccEEEEecccCCCccccccCC--CcccHhHHHHHH-hcCCCCCCcCCCCceeeEEEEEecCCCc
Confidence 87777777763 3679999999999765433221 121235677765 4556666667899999998876543322
Q ss_pred eEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc--CcCCCccCceeeecCC
Q 006068 278 RILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GMTKPSIGHTVANTEV 355 (662)
Q Consensus 278 ~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~--gl~~~~~GdTl~~~~~ 355 (662)
+-..|+|.+|+|++||.|.+.|.+ ...+|++|+.++ .++++|.|||.|+|. +-.++..|++||+++.
T Consensus 257 ~g~~G~v~~G~l~~gd~v~i~P~~-------~~~~VksI~~~~----~~~~~a~aG~~v~i~l~~~~~i~rG~vL~~~~~ 325 (632)
T PRK05506 257 RGFAGTVASGVVRPGDEVVVLPSG-------KTSRVKRIVTPD----GDLDEAFAGQAVTLTLADEIDISRGDMLARADN 325 (632)
T ss_pred eEEEEEEecceeecCCEEEEcCCC-------ceEEEEEEEECC----ceeCEEcCCCeEEEEecCccccCCccEEecCCC
Confidence 336799999999999999998753 468999998664 468999999999884 3346889999999865
No 47
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=100.00 E-value=7.3e-34 Score=311.22 Aligned_cols=266 Identities=27% Similarity=0.357 Sum_probs=211.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--------------------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-------------------- 117 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-------------------- 117 (662)
++..||+++||+|||||||+++|... .+|..+.|++||+|+...+..+.|.
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~---------~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGV---------WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNC 77 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCe---------ecccCHhHHhcCcEEEecccccccccccccCcccccccccccccc
Confidence 45689999999999999999999432 4789999999999999877654442
Q ss_pred ------CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCc-hhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHH
Q 006068 118 ------ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEE 189 (662)
Q Consensus 118 ------~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~ 189 (662)
.+.++|||||||.+|...+...+..+|++++|+|+.++. ..++.+++..+...+++ +++|+||+|+.+. .
T Consensus 78 ~~~~~~~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~--~ 155 (411)
T PRK04000 78 GSETELLRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK--E 155 (411)
T ss_pred ccccccccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc--h
Confidence 268999999999999999999999999999999999997 89999999999888875 7889999999543 2
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEe
Q 006068 190 RCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTM 269 (662)
Q Consensus 190 ~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~ 269 (662)
...+..+++..++.... ...+|++++||++|. |+++|++.|.+.+|.|..+.+.||+++|.+
T Consensus 156 ~~~~~~~~i~~~l~~~~----~~~~~ii~vSA~~g~--------------gI~~L~~~L~~~l~~~~~~~~~~~r~~I~~ 217 (411)
T PRK04000 156 RALENYEQIKEFVKGTV----AENAPIIPVSALHKV--------------NIDALIEAIEEEIPTPERDLDKPPRMYVAR 217 (411)
T ss_pred hHHHHHHHHHHHhcccc----CCCCeEEEEECCCCc--------------CHHHHHHHHHHhCCCCCCCCCCCceEEEEe
Confidence 22233344444443221 114689999999999 999999999999998888789999999998
Q ss_pred eee--------ecccceEEEEEEeeceeccCCEEEEeeccC---CCCcc--eEEeEEEeEEeecCCceeeecccCCCCEE
Q 006068 270 MEK--------DFYLGRILTGRVSSGVVSVGDKVHGLRITD---SGTEK--IEEGKVTKLMKKKGTGMVLIDSAGAGDII 336 (662)
Q Consensus 270 ~~~--------~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~---~~~~~--~~~~kI~~i~~~~g~~~~~v~~a~AGdIv 336 (662)
++. +++.|.++.|||.+|+|++||.|.+.+.+. .+... ....+|++|...+ .++++|.|||.|
T Consensus 218 ~f~v~~~g~~~~~~~G~Vv~G~v~~G~l~~gd~v~i~P~~~~~~~~~~~~~~~~~~VksI~~~~----~~~~~a~~G~~v 293 (411)
T PRK04000 218 SFDVNKPGTPPEKLKGGVIGGSLIQGVLKVGDEIEIRPGIKVEEGGKTKWEPITTKIVSLRAGG----EKVEEARPGGLV 293 (411)
T ss_pred eeeecCCCccccCCcceEEEEEEEeCEEecCCEEEEcCCcceecccccccccceEEEeEEEECC----EECCEEcCCCEE
Confidence 774 345678999999999999999999997531 00000 0146899997653 689999999998
Q ss_pred EEc-----Cc--CCCccCceeeecCCC
Q 006068 337 SVA-----GM--TKPSIGHTVANTEVT 356 (662)
Q Consensus 337 ai~-----gl--~~~~~GdTl~~~~~~ 356 (662)
+|+ ++ .++..|+.||+++.+
T Consensus 294 ~i~l~~~~~i~~~~i~~G~vl~~~~~~ 320 (411)
T PRK04000 294 GVGTKLDPSLTKADALAGSVAGKPGTL 320 (411)
T ss_pred EEEeccCCCCCHHHccCccEEEcCCCC
Confidence 884 33 257889999998654
No 48
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=100.00 E-value=1.7e-33 Score=308.45 Aligned_cols=264 Identities=27% Similarity=0.351 Sum_probs=210.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec---------------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--------------------- 117 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--------------------- 117 (662)
...||+++||+|||||||+++|... .+|..++|++||+|+...+..+.+.
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~---------~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGV---------WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCG 73 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCe---------ecccCHhHHHcCceeEecccccccccccccCccccccccccccccc
Confidence 3569999999999999999999643 3688899999999999886654321
Q ss_pred -----CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCc-hhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHH
Q 006068 118 -----ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEER 190 (662)
Q Consensus 118 -----~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~ 190 (662)
+..++|||||||.+|...+..++..+|++|||||+.+|. +.||.+++..+...+++ +|+|+||+|+.+ .+.
T Consensus 74 ~~~~~~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~--~~~ 151 (406)
T TIGR03680 74 SETELLRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS--KEK 151 (406)
T ss_pred cccccccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC--HHH
Confidence 468999999999999999999999999999999999998 89999999999888876 688999999954 233
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEee
Q 006068 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMM 270 (662)
Q Consensus 191 ~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~ 270 (662)
..+..+++.+++..... ..+|++++||++|. |++.|+++|...+|.|..+.+.||+++|..+
T Consensus 152 ~~~~~~~i~~~l~~~~~----~~~~ii~vSA~~g~--------------gi~~L~e~L~~~l~~~~~~~~~~~~~~I~~~ 213 (406)
T TIGR03680 152 ALENYEEIKEFVKGTVA----ENAPIIPVSALHNA--------------NIDALLEAIEKFIPTPERDLDKPPLMYVARS 213 (406)
T ss_pred HHHHHHHHHhhhhhccc----CCCeEEEEECCCCC--------------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEE
Confidence 33344555555443211 14789999999998 9999999999999988878889999999987
Q ss_pred ee--------ecccceEEEEEEeeceeccCCEEEEeeccC---CCCcc--eEEeEEEeEEeecCCceeeecccCCCCEEE
Q 006068 271 EK--------DFYLGRILTGRVSSGVVSVGDKVHGLRITD---SGTEK--IEEGKVTKLMKKKGTGMVLIDSAGAGDIIS 337 (662)
Q Consensus 271 ~~--------~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~---~~~~~--~~~~kI~~i~~~~g~~~~~v~~a~AGdIva 337 (662)
+. +++.|.++.|+|.+|+|++||.|.+.|.+. .+... ....+|++|.... .++++|.|||.|+
T Consensus 214 f~v~~~g~~~~~~~G~Vv~G~v~~G~i~~gd~v~i~P~~~~~~~g~~~~~~~~~~V~sI~~~~----~~~~~a~~G~~v~ 289 (406)
T TIGR03680 214 FDVNKPGTPPEKLKGGVIGGSLIQGKLKVGDEIEIRPGIKVEKGGKTKWEPIYTEITSLRAGG----YKVEEARPGGLVG 289 (406)
T ss_pred EeecCCCccccCCceeEEEEEEEeCEEeCCCEEEEccCccccccccccccccceEEeEEEECC----EECCEEcCCCEEE
Confidence 74 344788999999999999999999987521 00000 0135889998653 6899999999998
Q ss_pred Ec-----Cc--CCCccCceeeecCC
Q 006068 338 VA-----GM--TKPSIGHTVANTEV 355 (662)
Q Consensus 338 i~-----gl--~~~~~GdTl~~~~~ 355 (662)
|. ++ .++..|+.||+++.
T Consensus 290 i~l~~~~~i~~~dv~~G~vl~~~~~ 314 (406)
T TIGR03680 290 VGTKLDPALTKADALAGQVVGKPGT 314 (406)
T ss_pred EeeccCCCCCHHHcccccEEEcCCC
Confidence 73 33 25778999998764
No 49
>CHL00189 infB translation initiation factor 2; Provisional
Probab=100.00 E-value=4.1e-33 Score=319.19 Aligned_cols=249 Identities=24% Similarity=0.339 Sum_probs=202.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec----CeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR----ENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~----~~~iniIDTPGh~dF~ 133 (662)
.+.++|+|+||+|||||||+++|+...+ .....+|+|.......+.|. ++.++|||||||.+|.
T Consensus 242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~------------~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~ 309 (742)
T CHL00189 242 NRPPIVTILGHVDHGKTTLLDKIRKTQI------------AQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFS 309 (742)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHhccC------------ccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHH
Confidence 4678999999999999999999987632 22334688877666666553 5899999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHH--H-HhcCCCCc
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL--F-ANLGATDE 210 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l--~-~~~g~~~~ 210 (662)
..+.++++.+|++|||||+.+|+++||.++|..+...++|+|||+||+|++..+... +.+++... + ..++
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~~e~---v~~eL~~~~ll~e~~g---- 382 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANANTER---IKQQLAKYNLIPEKWG---- 382 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccCHHH---HHHHHHHhccchHhhC----
Confidence 999999999999999999999999999999999999999999999999997755432 33332211 1 1111
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC--CCCCCCCCCceeEEEeeeeecccceEEEEEEeece
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP--PPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP--~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~ 288 (662)
..+|++++||++|. |+++|+++|..... .+..+++.|+.+.|+++..+++.|.+++++|++|+
T Consensus 383 -~~vpvv~VSAktG~--------------GIdeLle~I~~l~e~~~lk~~~~~~~~g~V~e~~iD~~~G~V~~~~V~sGt 447 (742)
T CHL00189 383 -GDTPMIPISASQGT--------------NIDKLLETILLLAEIEDLKADPTQLAQGIILEAHLDKTKGPVATILVQNGT 447 (742)
T ss_pred -CCceEEEEECCCCC--------------CHHHHHHhhhhhhhhhcccCCCCCCceEEEEEEEEcCCCceEEEEEEEcCE
Confidence 14789999999999 99999999987543 34456678999999999999999999999999999
Q ss_pred eccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCc-CCCccCceeee
Q 006068 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGM-TKPSIGHTVAN 352 (662)
Q Consensus 289 l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl-~~~~~GdTl~~ 352 (662)
|+.||.|.+.+ ...+|..|+.. ...++++|.|||+|+|.|+ +...+||+|.-
T Consensus 448 Lr~GD~vv~g~---------~~gkVr~m~~~---~~~~v~~a~pgdiV~I~gl~~~~~~Gd~l~v 500 (742)
T CHL00189 448 LHIGDIIVIGT---------SYAKIRGMINS---LGNKINLATPSSVVEIWGLSSVPATGEHFQV 500 (742)
T ss_pred EecCCEEEECC---------cceEEEEEEcC---CCcCccEEcCCCceEecCcccCCCCCCEEEE
Confidence 99999998864 22466666544 4468999999999999999 45678999854
No 50
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=100.00 E-value=7.5e-33 Score=314.61 Aligned_cols=253 Identities=28% Similarity=0.368 Sum_probs=213.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++||+|||||||+++|++.. +|..+.|+++|+|++..+..+.++++.++|||||||.+|...+..++.
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~---------~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe~f~~~~~~g~~ 72 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIA---------ADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHEKFISNAIAGGG 72 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCcc---------CcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHHHHHHHHHhhhc
Confidence 79999999999999999998541 467778899999999999999999999999999999999999999999
Q ss_pred hcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcc
Q 006068 142 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYAS 220 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~S 220 (662)
.+|++++|||+.+|+++||.+++..+...++| +|||+||+|+. +...+..+.+++.+++...++.. .+|++++|
T Consensus 73 ~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv--~~~~~~~~~~ei~~~l~~~~~~~---~~~ii~vS 147 (581)
T TIGR00475 73 GIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRV--NEEEIKRTEMFMKQILNSYIFLK---NAKIFKTS 147 (581)
T ss_pred cCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCC--CHHHHHHHHHHHHHHHHHhCCCC---CCcEEEEe
Confidence 99999999999999999999999999999999 89999999995 34444556667777776655431 36899999
Q ss_pred cccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC-CCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEee
Q 006068 221 AKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK-ASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLR 299 (662)
Q Consensus 221 A~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~-~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~ 299 (662)
|++|. |++++++.|.+.++... ...++||+++|..++..++.|.++.|+|.+|+++.||.|.+.|
T Consensus 148 A~tG~--------------GI~eL~~~L~~l~~~~~~~~~~~p~r~~Id~~f~v~G~GtVv~G~v~~G~i~~Gd~l~i~P 213 (581)
T TIGR00475 148 AKTGQ--------------GIGELKKELKNLLESLDIKRIQKPLRMAIDRAFKVKGAGTVVTGTAFSGEVKVGDNLRLLP 213 (581)
T ss_pred CCCCC--------------CchhHHHHHHHHHHhCCCcCcCCCcEEEEEEEEecCCcEEEEEEEEecceEecCCEEEECC
Confidence 99998 88888888766553321 1247899999999999999999999999999999999999997
Q ss_pred ccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCccCceeeec
Q 006068 300 ITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVANT 353 (662)
Q Consensus 300 ~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~GdTl~~~ 353 (662)
.+ ...+|++|+.+. .++++|.|||.|+| .|++ ++..|..++++
T Consensus 214 ~~-------~~~~Vr~iq~~~----~~v~~a~aG~rval~L~~i~~~~i~rG~~~~~~ 260 (581)
T TIGR00475 214 IN-------HEVRVKAIQAQN----QDVEIAYAGQRIALNLMDVEPESLKRGLLILTP 260 (581)
T ss_pred CC-------ceEEEeEEEECC----ccCCEEECCCEEEEEeCCCCHHHcCCceEEcCC
Confidence 53 467899998653 58999999999987 4654 57789666543
No 51
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-33 Score=283.23 Aligned_cols=298 Identities=26% Similarity=0.314 Sum_probs=238.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCC-----------CC----------ccccccccccccccceeEeeeEEEEEec
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD-----------IP----------HERAMDSISLERERGITIASKVTGISWR 117 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-----------~~----------~~~v~D~~~~E~ergiTi~~~~~~~~~~ 117 (662)
...+++.+|++|.|||||+.+||+.+... +. ...+.|-...|+|.||||+..+..|..+
T Consensus 5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 45689999999999999999999987631 10 1246788899999999999999999999
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCCCCCHHHHHHHHH
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPAVSEERCDEVES 196 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~~~~~~~~ei~~ 196 (662)
.++|.|.|||||+.|...+....+.||.+|++|||..|+..||++|--.+..+|++.+ +++||||+.+++.+.++++..
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~e~~F~~I~~ 164 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDYSEEVFEAIVA 164 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecccccCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999965 679999999999999999999
Q ss_pred HHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCC-CCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecc
Q 006068 197 LVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFY 275 (662)
Q Consensus 197 ~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~ 275 (662)
+...+..++|.... -++++||+.|.+...-+.. +|+.+..+-++|+. +..-.....+||+++|..+....-
T Consensus 165 dy~~fa~~L~~~~~----~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~----v~i~~~~~~~~~RfPVQ~V~Rp~~ 236 (431)
T COG2895 165 DYLAFAAQLGLKDV----RFIPISALLGDNVVSKSENMPWYKGPTLLEILET----VEIADDRSAKAFRFPVQYVNRPNL 236 (431)
T ss_pred HHHHHHHHcCCCcc----eEEechhccCCcccccccCCCcccCccHHHHHhh----ccccccccccceeeceEEecCCCC
Confidence 99999999988764 4899999999876543322 45555555444444 333334456789999988765332
Q ss_pred cceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcC--CCccCceeeec
Q 006068 276 LGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT--KPSIGHTVANT 353 (662)
Q Consensus 276 ~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~--~~~~GdTl~~~ 353 (662)
-=|-..|+|.+|++++||.|.+.|++ ...+|++|..+.| +.++|.||+-|.+.=-+ ++..||.|++.
T Consensus 237 dfRGyaGtiasG~v~~Gd~vvvlPsG-------~~s~V~~Ivt~dg----~~~~A~aG~aVtl~L~deidisRGd~i~~~ 305 (431)
T COG2895 237 DFRGYAGTIASGSVKVGDEVVVLPSG-------KTSRVKRIVTFDG----ELAQASAGEAVTLVLADEIDISRGDLIVAA 305 (431)
T ss_pred cccccceeeeccceecCCeEEEccCC-------CeeeEEEEeccCC----chhhccCCceEEEEEcceeecccCcEEEcc
Confidence 12335789999999999999999864 5679999999988 78999999998875323 57889999998
Q ss_pred CCCCCCCCCcCCCCeeeeeeeecCCCC
Q 006068 354 EVTTALPTIELDPPTISMTFGVNDSPL 380 (662)
Q Consensus 354 ~~~~~l~~~~~~~P~~~~~~~~~~sp~ 380 (662)
+.+.. +.-.|. ...+|..+.|+
T Consensus 306 ~~~~~-~~~~f~----A~vvWm~~~pl 327 (431)
T COG2895 306 DAPPA-VADAFD----ADVVWMDEEPL 327 (431)
T ss_pred CCCcc-hhhhcc----eeEEEecCCCC
Confidence 76533 222232 34566666665
No 52
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-32 Score=297.20 Aligned_cols=285 Identities=25% Similarity=0.340 Sum_probs=240.3
Q ss_pred CCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC-------------------CccccccccccccccceeEeeeEEEE
Q 006068 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGI 114 (662)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~E~ergiTi~~~~~~~ 114 (662)
...+....|.+++||+|+|||||+.+||+..|... ...+++|...+|++||+|.+.+...|
T Consensus 171 q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~f 250 (603)
T KOG0458|consen 171 QSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWF 250 (603)
T ss_pred ccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEE
Confidence 34455678999999999999999999999988421 23589999999999999999999999
Q ss_pred EecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCch-------hhHHHHHHHHHHcCCC-cEEEeccCCCCCC
Q 006068 115 SWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLR-PILLLNKVDRPAV 186 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~-------~qt~~~l~~~~~~~lp-~IvviNKiD~~~~ 186 (662)
+.+.+.++|+|+|||.||...+......+|.++|||||..|.+ .||+++...++.+|+. +||++||||..+|
T Consensus 251 es~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~V~W 330 (603)
T KOG0458|consen 251 ESKSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDLVSW 330 (603)
T ss_pred ecCceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEEEeecccccCc
Confidence 9999999999999999999999999999999999999987654 7999999999999997 5788999999999
Q ss_pred CHHHHHHHHHHHHHHH-HhcCCCCcCCCccEEEcccccCccCCccCCC-CCCCccchHHHHHHHHhhCCCCCCCCCCCce
Q 006068 187 SEERCDEVESLVFDLF-ANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADVRNMSQLLDAIIRHVPPPKASLDAPFQ 264 (662)
Q Consensus 187 ~~~~~~ei~~~v~~l~-~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~ 264 (662)
+.++++++.+.+..++ +..|+.+. ++-+++||+.+|.+....... .-..|..-..||+.|-. +-.|....+.||+
T Consensus 331 sq~RF~eIk~~l~~fL~~~~gf~es--~v~FIPiSGl~GeNL~k~~~~~~l~~WY~Gp~LL~~id~-~~~p~~~~~kPl~ 407 (603)
T KOG0458|consen 331 SQDRFEEIKNKLSSFLKESCGFKES--SVKFIPISGLSGENLIKIEQENELSQWYKGPTLLSQIDS-FKIPERPIDKPLR 407 (603)
T ss_pred cHHHHHHHHHHHHHHHHHhcCcccC--CcceEecccccCCcccccccchhhhhhhcCChHHHHHhh-ccCCCCcccCCeE
Confidence 9999999999999999 67788665 356899999999865543222 11233344568888766 6677777888999
Q ss_pred eEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC
Q 006068 265 MLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT 342 (662)
Q Consensus 265 ~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~ 342 (662)
+.|.+++..+..|..++|||.+|.|++||.|++.+.. ....|.+|..- ..+...|.|||-|.+ .|+.
T Consensus 408 ltIsdi~~~~~~~~~i~gkiesG~iq~gqkl~i~~s~-------e~~~vk~l~~~----~~~~~~a~AGD~Vsl~L~~i~ 476 (603)
T KOG0458|consen 408 LTISDIYPLPSSGVSISGKIESGYIQPGQKLYIMTSR-------EDATVKGLTSN----DEPKTWAVAGDNVSLKLPGIL 476 (603)
T ss_pred EEhhheeecCCCeeEEEEEEeccccccCCEEEEecCc-------ceEEEEeeecC----CCcceeEeeCCEEEEecCccC
Confidence 9999999999999899999999999999999999753 56778888654 347888999999876 4543
Q ss_pred --CCccCceeee
Q 006068 343 --KPSIGHTVAN 352 (662)
Q Consensus 343 --~~~~GdTl~~ 352 (662)
.+.+||++|.
T Consensus 477 ~n~v~~g~i~~~ 488 (603)
T KOG0458|consen 477 PNLVQVGDIADS 488 (603)
T ss_pred hhhcccceeeec
Confidence 5789999984
No 53
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.98 E-value=1.8e-31 Score=281.01 Aligned_cols=250 Identities=29% Similarity=0.408 Sum_probs=220.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
.|+..||++||||||+.++.+. ..|..++|++||+|++..+..+...++.+.|||.|||+||...+..++.
T Consensus 2 ii~t~GhidHgkT~L~~altg~---------~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~ 72 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGG---------VTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLG 72 (447)
T ss_pred eEEEeeeeeccchhhhhhhccc---------ccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhc
Confidence 5899999999999999999876 4589999999999999999999999999999999999999999999999
Q ss_pred hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcc
Q 006068 142 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYAS 220 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~S 220 (662)
..|.++||||+++|+++||.+++..+..+|++. ++|+||+|+ .++.+.++..+++...+. +. +.|++..|
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~--~d~~r~e~~i~~Il~~l~---l~----~~~i~~~s 143 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADR--VDEARIEQKIKQILADLS---LA----NAKIFKTS 143 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEecccc--ccHHHHHHHHHHHHhhcc---cc----cccccccc
Confidence 999999999999999999999999999999998 899999999 555566666666544433 22 35789999
Q ss_pred cccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeec
Q 006068 221 AKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRI 300 (662)
Q Consensus 221 A~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~ 300 (662)
+++|. |+++|-+.|.+..-.+..+.+.||+++|...+...++|++++|.++||+++.||.+++.+.
T Consensus 144 ~~~g~--------------GI~~Lk~~l~~L~~~~e~d~~~~fri~IDraFtVKGvGTVVtGtv~sG~V~v~D~L~l~p~ 209 (447)
T COG3276 144 AKTGR--------------GIEELKNELIDLLEEIERDEQKPFRIAIDRAFTVKGVGTVVTGTVLSGEVKVGDKLYLSPI 209 (447)
T ss_pred cccCC--------------CHHHHHHHHHHhhhhhhhccCCceEEEEeeEEEeccccEEEEeEEeeeeEEECCEEEEecC
Confidence 99999 9999999998766556678899999999999999999999999999999999999999975
Q ss_pred cCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc--Cc--CCCccCceeeecC
Q 006068 301 TDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GM--TKPSIGHTVANTE 354 (662)
Q Consensus 301 ~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~GdTl~~~~ 354 (662)
+ +..+|++|+..+ +++++|.||+.|+++ |. +++..||.|.+++
T Consensus 210 ~-------k~v~VRsIq~~d----~d~~~a~AG~RVgLaL~~v~~eei~RG~~L~~~~ 256 (447)
T COG3276 210 N-------KEVRVRSIQAHD----VDVEEAKAGQRVGLALKGVEKEEIERGDWLLKPE 256 (447)
T ss_pred C-------CeEEEEeeeecC----cchhhccccceeeeecCCCCHHHhhcccEeccCC
Confidence 4 678999998775 589999999999874 55 3578899998765
No 54
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.97 E-value=2.5e-31 Score=261.61 Aligned_cols=178 Identities=37% Similarity=0.502 Sum_probs=156.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCc------cccccccccccccceeEeeeEEEEE--ecCeeEEEEeCCCCc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH------ERAMDSISLERERGITIASKVTGIS--WRENELNMVDTPGHA 130 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~------~~v~D~~~~E~ergiTi~~~~~~~~--~~~~~iniIDTPGh~ 130 (662)
+++||+++||+|||||||+++|++..+..... .+.+|..+.|+++|+|+......+. +.++.++|||||||.
T Consensus 2 ~~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 2 NIRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp TEEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred CEEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 58999999999999999999999998754321 3468999999999999999999999 999999999999999
Q ss_pred cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHH-HHHHhcCCCC
Q 006068 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVF-DLFANLGATD 209 (662)
Q Consensus 131 dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~-~l~~~~g~~~ 209 (662)
+|..++.++++.+|++|+|||+.+|+..||.+++..+..+++|+|||+||+|+. ..++.+..+++. .+++..+...
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~---~~~~~~~~~~~~~~l~~~~~~~~ 158 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLI---EKELEEIIEEIKEKLLKEYGENG 158 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSS---HHHHHHHHHHHHHHHHHHTTSTT
T ss_pred ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccch---hhhHHHHHHHHHHHhccccccCc
Confidence 999999999999999999999999999999999999999999999999999996 456677777777 4455655443
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
. ..+|++++||++|+ |++.|+++|.+++|+
T Consensus 159 ~-~~~~vi~~Sa~~g~--------------gi~~Ll~~l~~~~P~ 188 (188)
T PF00009_consen 159 E-EIVPVIPISALTGD--------------GIDELLEALVELLPS 188 (188)
T ss_dssp T-STEEEEEEBTTTTB--------------THHHHHHHHHHHS--
T ss_pred c-ccceEEEEecCCCC--------------CHHHHHHHHHHhCcC
Confidence 1 35899999999999 999999999999985
No 55
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.97 E-value=4.5e-31 Score=265.40 Aligned_cols=189 Identities=40% Similarity=0.659 Sum_probs=157.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCC----CccccccccccccccceeEeeeEEEEEec----------CeeEEEEeC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWR----------ENELNMVDT 126 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~E~ergiTi~~~~~~~~~~----------~~~iniIDT 126 (662)
|||+|+||+|||||||+++|+..+|... ...+++|+.+.|++||+|+.++..++.|. ++.++||||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 7999999999999999999999988532 23578999999999999999998888886 789999999
Q ss_pred CCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC----CCCH----HHHHHHHHHH
Q 006068 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP----AVSE----ERCDEVESLV 198 (662)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~----~~~~----~~~~ei~~~v 198 (662)
|||.+|..++..+++.+|++|+|||+.+|+..||+++++.+...++|+|+|+||+|+. ..++ .++.++.+++
T Consensus 81 PG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~ 160 (222)
T cd01885 81 PGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQV 160 (222)
T ss_pred CCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999986 2333 3445556666
Q ss_pred HHHHHhcCC------CCcCCCc-c----EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 199 FDLFANLGA------TDEQLDF-P----VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 199 ~~l~~~~g~------~~~~~~~-P----vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
..++..+.. ++++..+ | |+++||+.||++. +. ....+..+|+.|++++|+|
T Consensus 161 n~~i~~~~~~~~~~~~~~~~~~~p~~gnv~f~S~~~gw~f~-~~-----~f~~~~~~~~~~~~~~~~p 222 (222)
T cd01885 161 NAIIGTYADEEFKEKDDEKWYFSPQKGNVAFGSALHGWGFT-II-----KFARIYAVLEMVVKHLPSP 222 (222)
T ss_pred hHHHHhcccccccccCcCCcEEeeCCCcEEEEecccCEEec-cc-----cccchHHHHHHHHhhCCCC
Confidence 666655532 1233445 7 9999999999762 21 2337889999999999987
No 56
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=8.4e-31 Score=279.21 Aligned_cols=248 Identities=29% Similarity=0.369 Sum_probs=208.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCccchHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~dF~~ev 136 (662)
.+.+.|-|+||+|||||||+++|-+.. -......|||.......+.. ++.+++|+|||||+-|..+.
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lRks~------------VAA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaAF~aMR 218 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALRKSS------------VAAGEAGGITQHIGAFTVTLPSGKSITFLDTPGHAAFSAMR 218 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHhhCc------------eehhhcCCccceeceEEEecCCCCEEEEecCCcHHHHHHHH
Confidence 367899999999999999999998752 12223358988776666554 57999999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHH---HHhcCCCCcCCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL---FANLGATDEQLD 213 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l---~~~~g~~~~~~~ 213 (662)
.|..+.+|.++|||.|.+|+++||.+.++.|+..++|+||++||||++++++++ +.+++... +.++|. +
T Consensus 219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pek---v~~eL~~~gi~~E~~GG-----d 290 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEK---VKRELLSQGIVVEDLGG-----D 290 (683)
T ss_pred hccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCCCHHH---HHHHHHHcCccHHHcCC-----c
Confidence 999999999999999999999999999999999999999999999999999955 44443221 233443 5
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh--CCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceecc
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH--VPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSV 291 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~--lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~ 291 (662)
++++++||++|. |++.|.++++-. +-.-..++.+|+.++|.....+++.|.+++.-|..|||++
T Consensus 291 VQvipiSAl~g~--------------nl~~L~eaill~Ae~mdLkA~p~g~~eg~VIES~vdkg~G~~aT~iVkrGTLkK 356 (683)
T KOG1145|consen 291 VQVIPISALTGE--------------NLDLLEEAILLLAEVMDLKADPKGPAEGWVIESSVDKGRGPVATVIVKRGTLKK 356 (683)
T ss_pred eeEEEeecccCC--------------ChHHHHHHHHHHHHHhhcccCCCCCceEEEEEeeecCCccceeEEEEecccccc
Confidence 789999999999 999999987633 3344567899999999999999999999999999999999
Q ss_pred CCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCc-cCceee
Q 006068 292 GDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPS-IGHTVA 351 (662)
Q Consensus 292 Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~-~GdTl~ 351 (662)
|+.+.... ..+||..|+..+| .++++|.||.-+-|.|++++. .||-+-
T Consensus 357 G~vlV~G~---------~w~KVr~l~D~nG---k~i~~A~Ps~pv~V~GwkdlP~aGD~vl 405 (683)
T KOG1145|consen 357 GSVLVAGK---------SWCKVRALFDHNG---KPIDEATPSQPVEVLGWKDLPIAGDEVL 405 (683)
T ss_pred ccEEEEec---------hhhhhhhhhhcCC---CCccccCCCCceEeecccCCCCCCceEE
Confidence 99887653 4689999999888 589999999999999999865 488763
No 57
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.97 E-value=8e-30 Score=251.96 Aligned_cols=189 Identities=32% Similarity=0.443 Sum_probs=159.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCC----CCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGAD----IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~----~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
..||+++||+|||||||+++|++..... .....++|+.+.|++||+|++.....+.+++.+++|+|||||.+|..+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 3599999999999999999999874321 112357899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+.+++..+|++++|||+.+|+..||+++|..+.+.++| +|+|+||+|+.. +.+..+++.+++..++..+|++.+ ++
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~-~~~~~~~~~~~i~~~l~~~g~~~~--~v 158 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD-DEELLELVEMEVRELLSKYGFDGD--NT 158 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCC-cHHHHHHHHHHHHHHHHHhccccc--CC
Confidence 99999999999999999999999999999999999998 568999999963 444455677788888888887543 58
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
|++++||++|.+..+ + ..+.+++..|+++|.+.+|.|
T Consensus 159 ~iipiSa~~g~n~~~--~--~~w~~~~~~l~~~l~~~~~~~ 195 (195)
T cd01884 159 PIVRGSALKALEGDD--P--NKWVKKILELLDALDSYIPTP 195 (195)
T ss_pred eEEEeeCccccCCCC--C--CcchhcHhHHHHHHHhCCCCC
Confidence 999999999986532 1 223336889999998888765
No 58
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.97 E-value=2.2e-29 Score=260.72 Aligned_cols=129 Identities=42% Similarity=0.615 Sum_probs=120.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
||+|+||+|||||||+++|++.+|... ...+++|+.+.|++||+|+++....+.|++++++|||||||.+|..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~~ 80 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTIE 80 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHHH
Confidence 799999999999999999999888532 23678999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHH
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEER 190 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~ 190 (662)
+.++++.+|++|+|||+.+|+..+|..+|+.+...++|+++|+||+|+.+++++.
T Consensus 81 ~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~a~~~~ 135 (270)
T cd01886 81 VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGADFFR 135 (270)
T ss_pred HHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999998777644
No 59
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.96 E-value=4.5e-29 Score=254.06 Aligned_cols=177 Identities=38% Similarity=0.608 Sum_probs=151.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
||+|+||+|+|||||+++|++.+|... ...+++|+.+.|++||+|+......+.|++++++|||||||.+|..+
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~~ 80 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIAE 80 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHHH
Confidence 799999999999999999999987532 23578999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh-----------
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN----------- 204 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~----------- 204 (662)
+.++++.+|++++|+|+.+|+..++..+|+.+...++|+++|+||+|+.++++.+ +.+++.+.|..
T Consensus 81 ~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~a~~~~---~~~~i~~~~~~~~~~~~~p~~~ 157 (237)
T cd04168 81 VERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGADLEK---VYQEIKEKLSSDIVPMQKVGLA 157 (237)
T ss_pred HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccCCCHHH---HHHHHHHHHCCCeEEEECCcEe
Confidence 9999999999999999999999999999999999999999999999998877643 33333332211
Q ss_pred ----------------c-C---------CCCc-----------------CCCccEEEcccccCccCCccCCCCCCCccch
Q 006068 205 ----------------L-G---------ATDE-----------------QLDFPVLYASAKEGWASSTFTKDPPADVRNM 241 (662)
Q Consensus 205 ----------------~-g---------~~~~-----------------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv 241 (662)
. . ++++ ..-+||+++||.++. |+
T Consensus 158 ~~~~~~~~~~~~l~e~vae~dd~l~e~yl~~~~~~~~el~~~l~~~~~~~~~~Pv~~gsa~~~~--------------Gv 223 (237)
T cd04168 158 PNICETNEIDDEFWETLAEGDDELLEKYLEGGPIEELELDNELSARIAKRKVFPVYHGSALKGI--------------GI 223 (237)
T ss_pred eeeeeeeeccHHHHHHHhcCCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCeEEEEEccccCCc--------------CH
Confidence 0 0 0000 012899999999999 99
Q ss_pred HHHHHHHHhhCCCC
Q 006068 242 SQLLDAIIRHVPPP 255 (662)
Q Consensus 242 ~~Lld~I~~~lP~p 255 (662)
+.||+.|.+++|+|
T Consensus 224 ~~ll~~~~~~~p~~ 237 (237)
T cd04168 224 EELLEGITKLFPTS 237 (237)
T ss_pred HHHHHHHHHhcCCC
Confidence 99999999999987
No 60
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1e-28 Score=266.73 Aligned_cols=250 Identities=27% Similarity=0.384 Sum_probs=204.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec---CeeEEEEeCCCCccchHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGGE 135 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~---~~~iniIDTPGh~dF~~e 135 (662)
+.+-|+|+||+|||||||++.+-... ......-|||.....+.+.++ ...++|+|||||+-|...
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~------------Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~m 71 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTN------------VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAM 71 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCc------------cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHH
Confidence 45689999999999999999997652 222334699999999999884 479999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC--C
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL--D 213 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~--~ 213 (662)
..|....+|.++||||+.+|+++||.+.+..++..++|+||++||+|++++++++. ..++.+ .|+..+.+ +
T Consensus 72 RaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v---~~el~~----~gl~~E~~gg~ 144 (509)
T COG0532 72 RARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKV---KQELQE----YGLVPEEWGGD 144 (509)
T ss_pred HhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCCCHHHH---HHHHHH----cCCCHhhcCCc
Confidence 99999999999999999999999999999999999999999999999999888553 333322 24333222 4
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC--CCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceecc
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV--PPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSV 291 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l--P~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~ 291 (662)
..++++||++|. |+++||+.|+-.. -.-+..++.+....|.....+++.|.++..-|++|+|+.
T Consensus 145 v~~VpvSA~tg~--------------Gi~eLL~~ill~aev~elka~~~~~a~gtviE~~~dkG~G~vatviv~~GtL~~ 210 (509)
T COG0532 145 VIFVPVSAKTGE--------------GIDELLELILLLAEVLELKANPEGPARGTVIEVKLDKGLGPVATVIVQDGTLKK 210 (509)
T ss_pred eEEEEeeccCCC--------------CHHHHHHHHHHHHHHHhhhcCCCCcceEEEEEEEeccCCCceEEEEEecCeEec
Confidence 779999999999 9999999886322 233456789999999999999999999999999999999
Q ss_pred CCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCc-cCceeeec
Q 006068 292 GDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPS-IGHTVANT 353 (662)
Q Consensus 292 Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~-~GdTl~~~ 353 (662)
||.|..... ..+|..++.-.| .+++.+.++--+.+.|++++. .||.....
T Consensus 211 GD~iv~g~~---------~g~I~t~v~~~~---~~i~~a~ps~~v~i~g~~evp~Ag~~~~v~ 261 (509)
T COG0532 211 GDIIVAGGE---------YGRVRTMVDDLG---KPIKEAGPSKPVEILGLSEVPAAGDVFIVV 261 (509)
T ss_pred CCEEEEccC---------CCceEEeehhcC---CCccccCCCCCeEEeccccccccCceEEec
Confidence 999988742 357777776665 578888888778888888754 57766443
No 61
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.96 E-value=3.3e-28 Score=276.05 Aligned_cols=264 Identities=24% Similarity=0.271 Sum_probs=193.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe------------------cCee
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW------------------RENE 120 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~------------------~~~~ 120 (662)
+.+.|+|+||+|||||||+++|.+..... ....++|.......+.+ +-..
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~------------~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAA------------KEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPG 72 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCccccc------------CCCCceEEeeceeeccccccccccceeccccccccccCC
Confidence 45689999999999999999997553211 11122332222111111 1113
Q ss_pred EEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC-CCCH-----------
Q 006068 121 LNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP-AVSE----------- 188 (662)
Q Consensus 121 iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~-~~~~----------- 188 (662)
++|||||||.+|...+.++++.+|++|||+|+.+|+++||.+++..+...++|+++++||+|+. .+..
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e~~~ 152 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLESIE 152 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHHHHh
Confidence 7999999999999999999999999999999999999999999999999999999999999984 2221
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCCc--------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHh---
Q 006068 189 -------ERCDEVESLVFDLFANLGATDE--------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR--- 250 (662)
Q Consensus 189 -------~~~~ei~~~v~~l~~~~g~~~~--------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~--- 250 (662)
..+++...++...+...|+..+ ..++|++++||++|. |+++|++.+..
T Consensus 153 ~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGe--------------Gi~dLl~~i~~~~~ 218 (586)
T PRK04004 153 KQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGE--------------GIPDLLMVLAGLAQ 218 (586)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCC--------------ChHHHHHHHHHHHH
Confidence 1122233344445555565443 135889999999999 99999988763
Q ss_pred -hCCCC-CCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecC-------
Q 006068 251 -HVPPP-KASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKG------- 321 (662)
Q Consensus 251 -~lP~p-~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g------- 321 (662)
+++.+ ..+++.|+++.|+++..+++.|.+++++|++|+|++||.|.+.+... ....+|++|+.+.+
T Consensus 219 ~~l~~~l~~~~~~~~~~~V~ev~~~~g~G~v~~~~v~~GtL~~Gd~vv~~~~~~-----~i~~kVr~l~~~~~~~e~~~~ 293 (586)
T PRK04004 219 RYLEERLKIDVEGPGKGTVLEVKEERGLGTTIDVILYDGTLRKGDTIVVGGKDG-----PIVTKVRALLKPRPLDEMRDP 293 (586)
T ss_pred HHHHHhhccCCCCCeEEEEEEEEEeCCCceEEEEEEEcCEEECCCEEEECcCCC-----cceEEEEEEecCcchhhcccc
Confidence 34433 34567899999999999999999999999999999999998876431 12468999987631
Q ss_pred -CceeeecccCCCCEEEE--cCcCCCccCceeeec
Q 006068 322 -TGMVLIDSAGAGDIISV--AGMTKPSIGHTVANT 353 (662)
Q Consensus 322 -~~~~~v~~a~AGdIvai--~gl~~~~~GdTl~~~ 353 (662)
.....+++|.|..-|-| .|++++..||.+.-.
T Consensus 294 ~~~~~~~~~~~~~~~v~i~~~gl~~~~~g~~~~v~ 328 (586)
T PRK04004 294 EDKFKPVDEVVAAAGVKISAPDLEDALAGSPLRVV 328 (586)
T ss_pred ccccccccccCCCCceEEEeCCccccCCCCeEEEe
Confidence 13356777777665555 488888788876443
No 62
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.96 E-value=9.6e-29 Score=255.75 Aligned_cols=132 Identities=35% Similarity=0.548 Sum_probs=122.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC----------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG 128 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPG 128 (662)
++|||+|+||+|+|||||+++|++.+|... ...+++|+.++|++||+|+......+.|++++++||||||
T Consensus 1 ~~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG 80 (267)
T cd04169 1 RRRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPG 80 (267)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCC
Confidence 379999999999999999999999887532 2457899999999999999999999999999999999999
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHH
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEER 190 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~ 190 (662)
|.+|..++.++++.+|++|+|+|+.+++..++..+|+.+...++|+++|+||+|+.++++.+
T Consensus 81 ~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a~~~~ 142 (267)
T cd04169 81 HEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGRDPLE 142 (267)
T ss_pred chHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999998877643
No 63
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=1.5e-27 Score=240.27 Aligned_cols=260 Identities=28% Similarity=0.381 Sum_probs=207.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec---------------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--------------------- 117 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--------------------- 117 (662)
.-.||+.+||+|||||||+.+|.+- -+|.+.+|-+|||||...++....-
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGv---------wT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg 79 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGV---------WTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCG 79 (415)
T ss_pred cceEeeeeeecccchhhheehhhce---------eeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCC
Confidence 3569999999999999999999765 3478899999999999877754321
Q ss_pred -----CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-chhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHH
Q 006068 118 -----ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-PLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEER 190 (662)
Q Consensus 118 -----~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~ 190 (662)
-+.+.|+|+|||+-+...+.+.....|+|||||+|++. +++||++++..+.-.|++- |++-||+|+ .+.++
T Consensus 80 ~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDl--V~~E~ 157 (415)
T COG5257 80 AETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDL--VSRER 157 (415)
T ss_pred CCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccce--ecHHH
Confidence 24789999999999999999999999999999999886 7899999999999999985 567799999 56677
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEee
Q 006068 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMM 270 (662)
Q Consensus 191 ~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~ 270 (662)
..|-.+++.++++..-+. +.|++++||..+. |++.|+++|.+++|.|.+|.+.|++|+|...
T Consensus 158 AlE~y~qIk~FvkGt~Ae----~aPIIPiSA~~~~--------------NIDal~e~i~~~IptP~rd~~~~p~m~v~RS 219 (415)
T COG5257 158 ALENYEQIKEFVKGTVAE----NAPIIPISAQHKA--------------NIDALIEAIEKYIPTPERDLDKPPRMYVARS 219 (415)
T ss_pred HHHHHHHHHHHhcccccC----CCceeeehhhhcc--------------CHHHHHHHHHHhCCCCccCCCCCceEEEEee
Confidence 777788888887654333 3689999999998 9999999999999999999999999999765
Q ss_pred ee--------ecccceEEEEEEeeceeccCCEEEEeecc---CCCCc--ceEEeEEEeEEeecCCceeeecccCCCCEEE
Q 006068 271 EK--------DFYLGRILTGRVSSGVVSVGDKVHGLRIT---DSGTE--KIEEGKVTKLMKKKGTGMVLIDSAGAGDIIS 337 (662)
Q Consensus 271 ~~--------~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~---~~~~~--~~~~~kI~~i~~~~g~~~~~v~~a~AGdIva 337 (662)
+. +.-.|-+.-|.+.+|.++.||.|.+.+.- ..+.. .-...+|.+|+. ...++++|.+|-.++
T Consensus 220 FDVNkPGt~~~~L~GGViGGsl~~G~l~vGDEIEIrPGi~v~k~~k~~~~pi~T~i~Sl~a----g~~~~~ea~PGGLvg 295 (415)
T COG5257 220 FDVNKPGTPPEELKGGVIGGSLVQGVLRVGDEIEIRPGIVVEKGGKTVWEPITTEIVSLQA----GGEDVEEARPGGLVG 295 (415)
T ss_pred cccCCCCCCHHHccCceecceeeeeeEecCCeEEecCCeEeecCCceEEEEeeEEEEEEEe----CCeeeeeccCCceEE
Confidence 43 23467888999999999999999998632 11100 011235656542 236899999999999
Q ss_pred E-cCcCC-CccCceee
Q 006068 338 V-AGMTK-PSIGHTVA 351 (662)
Q Consensus 338 i-~gl~~-~~~GdTl~ 351 (662)
| ++|+- +..+|-|+
T Consensus 296 vGT~lDP~ltKaD~L~ 311 (415)
T COG5257 296 VGTKLDPTLTKADALV 311 (415)
T ss_pred EecccCcchhhhhhhc
Confidence 8 57763 33355553
No 64
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.3e-28 Score=247.36 Aligned_cols=249 Identities=26% Similarity=0.337 Sum_probs=211.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec---------CeeEEEEeCCCCcc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---------ENELNMVDTPGHAD 131 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~---------~~~iniIDTPGh~d 131 (662)
.|++|+||+|+|||||..+|..-. .+...|.++...+||||.+..+..+... ..+++++|+|||+.
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~-----STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHas 82 (522)
T KOG0461|consen 8 LNLGILGHVDSGKTTLARALSELG-----STAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHAS 82 (522)
T ss_pred eeeeeEeeccCchHHHHHHHHhhc-----cchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHH
Confidence 699999999999999999998652 2445699999999999999887776542 45789999999999
Q ss_pred chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCC--CHHHHHHHHHHHHHHHHhcCCCC
Q 006068 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV--SEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 132 F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~--~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
+...+..+....|.+++|||+..|.+.||.+++-.......+.|||+||+|.... +...+++....+..-++..++..
T Consensus 83 LIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~f~g 162 (522)
T KOG0461|consen 83 LIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTGFDG 162 (522)
T ss_pred HHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcCcCC
Confidence 9999999999999999999999999999999999998888899999999997432 23344555566666666666654
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeecee
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVV 289 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l 289 (662)
..|++++||+.|+... .++.+|.+.|.+.+-.|.+++++||.|.|...+..++.|++..|.|.+|++
T Consensus 163 ---~~PI~~vsa~~G~~~~----------~~i~eL~e~l~s~if~P~Rd~~gpflm~vDHCF~IKGQGTV~TGTvl~G~~ 229 (522)
T KOG0461|consen 163 ---NSPIVEVSAADGYFKE----------EMIQELKEALESRIFEPKRDEEGPFLMAVDHCFAIKGQGTVLTGTVLRGVL 229 (522)
T ss_pred ---CCceeEEecCCCccch----------hHHHHHHHHHHHhhcCCCcCCCCCeEEEeeeeEEeccCceEEeeeEEEeEE
Confidence 4799999999996322 389999999999999999999999999999999999999999999999999
Q ss_pred ccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE
Q 006068 290 SVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV 338 (662)
Q Consensus 290 ~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai 338 (662)
+.|+.|.+...+ +..||++|..++ .+|.+|.+||.+++
T Consensus 230 ~ln~~iE~PAL~-------e~rkVKslqmf~----~~vtsa~~GdR~g~ 267 (522)
T KOG0461|consen 230 RLNTEIEFPALN-------EKRKVKSLQMFK----QRVTSAAAGDRAGF 267 (522)
T ss_pred ecCcEEeecccc-------hhhhhhhHHHHh----hhhhhhhcccceee
Confidence 999999987643 455788887764 58999999999765
No 65
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.96 E-value=2.5e-27 Score=243.24 Aligned_cols=277 Identities=28% Similarity=0.359 Sum_probs=225.7
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC--CccccccccccccccceeEeeeEEEEEec-----------------
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI--PHERAMDSISLERERGITIASKVTGISWR----------------- 117 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~--~~~~v~D~~~~E~ergiTi~~~~~~~~~~----------------- 117 (662)
.....+|+..||+|||||||+..|....-... ..-.+.|..+.|-++|.|.+.++.-+-|+
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~ 193 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKA 193 (527)
T ss_pred CCceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHh
Confidence 34567999999999999999999975432221 12356788899999999988877776654
Q ss_pred ------CeeEEEEeCCCCccchHHHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHH
Q 006068 118 ------ENELNMVDTPGHADFGGEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (662)
Q Consensus 118 ------~~~iniIDTPGh~dF~~ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (662)
+.-+.|+||-||+.+...+.+.| ...|..+|+|.|++|++..|++++-.+...++|+||+++|+|. .+.+
T Consensus 194 ~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~--~~dd 271 (527)
T COG5258 194 AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDM--VPDD 271 (527)
T ss_pred HhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEEeccc--CcHH
Confidence 45689999999999998888887 4689999999999999999999999999999999999999999 5567
Q ss_pred HHHHHHHHHHHHHHhcCCC------------------CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 190 RCDEVESLVFDLFANLGAT------------------DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 190 ~~~ei~~~v~~l~~~~g~~------------------~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
++..+.+++..+++..+-- ..+.-+|++++|+.+|. |++ ||+.+...
T Consensus 272 r~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~--------------Gld-lL~e~f~~ 336 (527)
T COG5258 272 RFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGE--------------GLD-LLDEFFLL 336 (527)
T ss_pred HHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCc--------------cHH-HHHHHHHh
Confidence 7788888888877643210 01124899999999998 776 56666778
Q ss_pred CCCCC-CCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeeccc
Q 006068 252 VPPPK-ASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSA 330 (662)
Q Consensus 252 lP~p~-~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a 330 (662)
+|.-. .+..+||.|+|.+++...++|.++.|.|.+|.+..||+|++.|..++ +....+|++|... +..+++|
T Consensus 337 Lp~rr~~~d~g~flmYId~iYsVtGVGtVvsGsV~~G~l~~gd~vllGP~~~G---~fr~v~vkSIemh----~~rvdsa 409 (527)
T COG5258 337 LPKRRRWDDEGPFLMYIDKIYSVTGVGTVVSGSVKSGILHVGDTVLLGPFKDG---KFREVVVKSIEMH----HYRVDSA 409 (527)
T ss_pred CCcccccCCCCCeEEEEEeeEEEeeeEEEEeeeEEeeeeccCCEEEEccCCCC---cEEEEEEEEEEEe----eEEeccc
Confidence 88763 36679999999999999999999999999999999999999886543 5677889998744 4689999
Q ss_pred CCCCEEEE--cCcCC--CccCceeeecCCCC
Q 006068 331 GAGDIISV--AGMTK--PSIGHTVANTEVTT 357 (662)
Q Consensus 331 ~AGdIvai--~gl~~--~~~GdTl~~~~~~~ 357 (662)
.||+|+.+ .|++. +..|.+|+....|.
T Consensus 410 ~aG~iig~Al~gv~~e~lerGMVl~~~~~pk 440 (527)
T COG5258 410 KAGSIIGIALKGVEKEELERGMVLSAGADPK 440 (527)
T ss_pred cCCcEEEEEecccCHHHHhcceEecCCCCch
Confidence 99999755 68764 88899998764443
No 66
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=2.7e-28 Score=251.98 Aligned_cols=285 Identities=24% Similarity=0.316 Sum_probs=236.8
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCC-------------------CCccccccccccccccceeEeeeEEEEEec
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGAD-------------------IPHERAMDSISLERERGITIASKVTGISWR 117 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-------------------~~~~~v~D~~~~E~ergiTi~~~~~~~~~~ 117 (662)
+....|+.++||+++||||+-..+++..|.- -+.+++||++.+|+++|-|+....+.|+..
T Consensus 76 pk~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte 155 (501)
T KOG0459|consen 76 PKEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETE 155 (501)
T ss_pred CCCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEec
Confidence 3567899999999999999999999888731 123689999999999999999999999999
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCch-------hhHHHHHHHHHHcCCCc-EEEeccCCCC--CCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLRP-ILLLNKVDRP--AVS 187 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~-------~qt~~~l~~~~~~~lp~-IvviNKiD~~--~~~ 187 (662)
..+++|+|+|||..|...+....+.||.++||++|..|.+ .||+++...++..++.. |+++||||-+ +|+
T Consensus 156 ~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs 235 (501)
T KOG0459|consen 156 NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWS 235 (501)
T ss_pred ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEEEEeccCCccCcc
Confidence 9999999999999999999999999999999999987654 59999999999999975 6789999975 567
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEE
Q 006068 188 EERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267 (662)
Q Consensus 188 ~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V 267 (662)
.+++++..+++..++..+|+.... +.-++++|+.+|.+..+... +...|.....+|..+.+ +|...++.++||++.|
T Consensus 236 ~eRy~E~~~k~~~fLr~~g~n~~~-d~~f~p~sg~tG~~~k~~~~-s~cpwy~gp~fl~~ld~-l~~~~R~~~GP~~~pI 312 (501)
T KOG0459|consen 236 NERYEECKEKLQPFLRKLGFNPKP-DKHFVPVSGLTGANVKDRTD-SVCPWYKGPIFLEYLDE-LPHLERILNGPIRCPV 312 (501)
T ss_pred hhhHHHHHHHHHHHHHHhcccCCC-Cceeeecccccccchhhccc-ccCCcccCCccceehhc-cCcccccCCCCEEeeh
Confidence 789999999999998888875432 34578999999987665554 22222234456666644 8888899999999999
Q ss_pred EeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--C
Q 006068 268 TMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--K 343 (662)
Q Consensus 268 ~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~ 343 (662)
.+-+.| .|++.+|+|.||++++||.+.+.|.+ ....|.+||.- -++++.+.|||.+-| .|++ +
T Consensus 313 ~~Kykd--mGTvv~GKvEsGsi~kg~~lvvMPnk-------~~veV~~I~~d----dvE~~~~~pGenvk~rlkgieeed 379 (501)
T KOG0459|consen 313 ANKYKD--MGTVVGGKVESGSIKKGQQLVVMPNK-------TNVEVLGIYSD----DVETDRVAPGENVKLRLKGIEEED 379 (501)
T ss_pred hhhccc--cceEEEEEecccceecCCeEEEccCC-------cceEEEEEecc----cceeeeccCCcceEEEecccchhh
Confidence 876665 68999999999999999999999753 45678888754 368999999999765 6875 6
Q ss_pred CccCceeeecCCCC
Q 006068 344 PSIGHTVANTEVTT 357 (662)
Q Consensus 344 ~~~GdTl~~~~~~~ 357 (662)
+..|-+||++.++.
T Consensus 380 i~~GfiL~~~~n~~ 393 (501)
T KOG0459|consen 380 ISPGFILCSPNNPC 393 (501)
T ss_pred ccCceEEecCCCcc
Confidence 89999999988753
No 67
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.95 E-value=2.7e-27 Score=233.90 Aligned_cols=190 Identities=61% Similarity=1.006 Sum_probs=161.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC----CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI----PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG 134 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ 134 (662)
++|||+++|++|+|||||+++|++..+... ...+++|+.+.|.++|+|+......+.+++++++|||||||.+|..
T Consensus 1 ~~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 80 (194)
T cd01891 1 DIRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGG 80 (194)
T ss_pred CccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHH
Confidence 379999999999999999999998655311 2357788999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 135 EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 135 ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
.+..+++.+|++++|+|+.++...++..++..+...++|+++|+||+|+...+. .+..+++.+++..++...++..+
T Consensus 81 ~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 157 (194)
T cd01891 81 EVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARP---EEVVDEVFDLFIELGATEEQLDF 157 (194)
T ss_pred HHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCCH---HHHHHHHHHHHHHhCCccccCcc
Confidence 999999999999999999999889998888888888999999999999965444 34556666666666655566678
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
|++++||++|++...+.. ...++.+|++.|.+++|.|
T Consensus 158 ~iv~~Sa~~g~~~~~~~~----~~~~~~~l~~~~~~~~~~~ 194 (194)
T cd01891 158 PVLYASAKNGWASLNLED----PSEDLEPLFDTIIEHVPAP 194 (194)
T ss_pred CEEEeehhcccccccccc----chhhHHHHHHHHHhcCCCC
Confidence 999999999997655432 2348999999999999987
No 68
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.95 E-value=9.8e-27 Score=263.05 Aligned_cols=261 Identities=25% Similarity=0.290 Sum_probs=189.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec------------------CeeE
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR------------------ENEL 121 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~------------------~~~i 121 (662)
.+.|+|+||+|||||||+++|++..... ....|+|.......+.++ ...+
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~------------~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l 71 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAK------------REAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGL 71 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccccc------------ccCCceecccCeeEeeeccccccccccccccccccccCcE
Confidence 4579999999999999999998763211 112334443333222221 1248
Q ss_pred EEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC-CCHH---HH------
Q 006068 122 NMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA-VSEE---RC------ 191 (662)
Q Consensus 122 niIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~-~~~~---~~------ 191 (662)
+|||||||.+|.....++++.+|+++||+|+.+|+++||.+.+..+...++|+|+++||+|+.. +... .+
T Consensus 72 ~~iDTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak 151 (590)
T TIGR00491 72 LFIDTPGHEAFTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMESFSK 151 (590)
T ss_pred EEEECCCcHhHHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999953 2100 00
Q ss_pred --HHHH-------HHHHHHHHhcCCCCc--------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHh----
Q 006068 192 --DEVE-------SLVFDLFANLGATDE--------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR---- 250 (662)
Q Consensus 192 --~ei~-------~~v~~l~~~~g~~~~--------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~---- 250 (662)
..+. ..+...+...|+..+ ..++|++++||++|. |+++|+++|..
T Consensus 152 ~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGe--------------GideLl~~l~~l~~~ 217 (590)
T TIGR00491 152 QEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGE--------------GIPELLTMLAGLAQQ 217 (590)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCC--------------ChhHHHHHHHHHHHH
Confidence 0011 111122344444332 225799999999999 99999998864
Q ss_pred hCC-CCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCC-------
Q 006068 251 HVP-PPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGT------- 322 (662)
Q Consensus 251 ~lP-~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~------- 322 (662)
+++ .-..++++|+++.|..++.+.+.|.++.|.|++|+|++||.|.+.+.+.. ...+|+.|+...+.
T Consensus 218 ~l~~~l~~~~~~~~~~~V~e~~~~~G~G~v~t~~v~~G~l~~GD~iv~~~~~~~-----i~~kVr~l~~~~~l~e~r~~~ 292 (590)
T TIGR00491 218 YLEEQLKLEEEGPARGTILEVKEETGLGMTIDAVIYDGILRKGDTIAMAGSDDV-----IVTRVRALLKPRPLEEMRESR 292 (590)
T ss_pred HhhhhhccCCCCCeEEEEEEEEEcCCCceEEEEEEEcCEEeCCCEEEEccCCCc-----ccEEEEEecCCCccccccccc
Confidence 232 22335678999999999999999999999999999999999999875321 35689998877542
Q ss_pred -ceeeecccC--CCCEEEEcCcCCCccCceee
Q 006068 323 -GMVLIDSAG--AGDIISVAGMTKPSIGHTVA 351 (662)
Q Consensus 323 -~~~~v~~a~--AGdIvai~gl~~~~~GdTl~ 351 (662)
+...+.++. +|--+.+.|++++..|+.+.
T Consensus 293 ~~~~~~~~~~~~~~~~v~~~~l~~~~aG~~~~ 324 (590)
T TIGR00491 293 KKFQKVDEVVAAAGVKIAAPGLDDVMAGSPIR 324 (590)
T ss_pred cccCCcceecCCCceeEEecCCCCCCCCCEEE
Confidence 123455544 44445667888877888764
No 69
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.95 E-value=3.7e-27 Score=235.72 Aligned_cols=186 Identities=29% Similarity=0.355 Sum_probs=152.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCC-------------------CccccccccccccccceeEeeeEEEEEecCeeEE
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWRENELN 122 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~in 122 (662)
||+|+||+|||||||+++|++.++... ...+++|..+.|++||+|++.....+.|++.+++
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceEE
Confidence 689999999999999999999988643 2256899999999999999999999999999999
Q ss_pred EEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHHHHHHHHHHHHH
Q 006068 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDL 201 (662)
Q Consensus 123 iIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~ei~~~v~~l 201 (662)
|||||||.+|..++..+++.+|++|+|+|+.+++..++..++..+...+.|. |+|+||+|+.+.+...+.++.+++..+
T Consensus 81 liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~~~~~i~~~~~~~ 160 (208)
T cd04166 81 IADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEEVFEEIVADYLAF 160 (208)
T ss_pred EEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999888888764 668999999766555566677777777
Q ss_pred HHhcCCCCcCCCccEEEcccccCccCCccCCC-CCCCccchHHHHHHHHhhCCCC
Q 006068 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~~gv~~Lld~I~~~lP~p 255 (662)
+..+++. ..|++++||++|.+..+.... +++.+ ..|+++| +.+++|
T Consensus 161 ~~~~~~~----~~~ii~iSA~~g~ni~~~~~~~~w~~g---~~~~~~~-~~~~~~ 207 (208)
T cd04166 161 AAKLGIE----DITFIPISALDGDNVVSRSENMPWYSG---PTLLEHL-ETVPIA 207 (208)
T ss_pred HHHcCCC----CceEEEEeCCCCCCCccCCCCCCCCCC---CcHHHHH-hcCCCC
Confidence 7777753 257999999999877654422 33333 4566665 344444
No 70
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.95 E-value=4.7e-27 Score=236.85 Aligned_cols=187 Identities=29% Similarity=0.354 Sum_probs=152.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCc-------------------cccccccccccccceeEeeeEEEEEecCeeEE
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPH-------------------ERAMDSISLERERGITIASKVTGISWRENELN 122 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~-------------------~~v~D~~~~E~ergiTi~~~~~~~~~~~~~in 122 (662)
||+|+||+|||||||+++|++.+|..... .+++|+.+.|++||+|++.....+.|++++++
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence 79999999999999999999998853211 14899999999999999999999999999999
Q ss_pred EEeCCCCccchHHHHHHHhhcceEEEEeeCCC-------CchhhHHHHHHHHHHcCC-CcEEEeccCCCCC--CCHHHHH
Q 006068 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGE-------GPLAQTKFVLAKALKYGL-RPILLLNKVDRPA--VSEERCD 192 (662)
Q Consensus 123 iIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~-------G~~~qt~~~l~~~~~~~l-p~IvviNKiD~~~--~~~~~~~ 192 (662)
+||||||.+|...+..+++.+|++|+|||+.+ +...++..++..+...+. |+|+|+||+|+.. ++...+.
T Consensus 81 liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl~~~~~~~~~~~ 160 (219)
T cd01883 81 ILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVTVNWSEERYD 160 (219)
T ss_pred EEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccccccccccHHHHH
Confidence 99999999999999999999999999999998 567899999998888885 5677999999974 3445567
Q ss_pred HHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 193 EVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 193 ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++.+++..++..++.... .+|++++||++|.+..+-.. ...+.+| ..|+++|....
T Consensus 161 ~i~~~l~~~l~~~~~~~~--~~~ii~iSA~tg~gi~~~~~-~~~w~~g-~~l~~~l~~~~ 216 (219)
T cd01883 161 EIKKELSPFLKKVGYNPK--DVPFIPISGLTGDNLIEKSE-NMPWYKG-PTLLEALDSLE 216 (219)
T ss_pred HHHHHHHHHHHHcCCCcC--CceEEEeecCcCCCCCcCCC-CCCCccC-CcHHHHHhCCC
Confidence 777777777777765432 47899999999997764322 1122334 77888875543
No 71
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.94 E-value=9e-26 Score=226.53 Aligned_cols=189 Identities=33% Similarity=0.490 Sum_probs=154.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCC-------ccccccccccccccceeEeeeEEEEEec-----CeeEEEEeCCC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIP-------HERAMDSISLERERGITIASKVTGISWR-----ENELNMVDTPG 128 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------~~~v~D~~~~E~ergiTi~~~~~~~~~~-----~~~iniIDTPG 128 (662)
|||+|+||+|||||||+++|+...+.... ..+.+|..+.|+++|+|+......+.+. .+.++||||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 79999999999999999999998875431 2457899999999999999988888765 37899999999
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCC--------CHHHHHHHHHHHHH
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV--------SEERCDEVESLVFD 200 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~--------~~~~~~ei~~~v~~ 200 (662)
|.+|...+..++..+|++|+|+|+.++...++..+++.+...++|.++|+||+|+... ...++.++.+++..
T Consensus 81 ~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~ 160 (213)
T cd04167 81 HVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNN 160 (213)
T ss_pred CcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999889988989888889999999999998521 12345566677777
Q ss_pred HHHhcCCCCcCCCcc----EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 201 LFANLGATDEQLDFP----VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 201 l~~~~g~~~~~~~~P----vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
++..++...+...+| ++++||+.+|++.. . ...++.+|++.|++.+|+|
T Consensus 161 ~~~~~~~~~~~~~~p~~~nv~~~s~~~~w~~~~-~-----~~~~~~~~~~~~~~~~~~~ 213 (213)
T cd04167 161 IIASFSTTLSFLFSPENGNVCFASSKFGFCFTL-E-----SFAKKYGLVDSIVSNIPSP 213 (213)
T ss_pred HHHHhcCCCceEeccCCCeEEEEecCCCeEEec-H-----HHHhhhhHHHHHHhhCCCC
Confidence 777666644333345 88999999996421 0 1135679999999999987
No 72
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.93 E-value=4.7e-25 Score=219.74 Aligned_cols=167 Identities=30% Similarity=0.382 Sum_probs=138.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-----------------------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR----------------------- 117 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~----------------------- 117 (662)
+||+|+||+|||||||+++|... .+|..+.|.++|+|+...+..+.|.
T Consensus 1 ~~i~~~g~~~~GKttL~~~l~~~---------~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGV---------WTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECE 71 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC---------CCCCCCeeEEcCCceeecccccccccccCcCCCCcccccccccccccc
Confidence 48999999999999999999543 2578899999999999998888775
Q ss_pred ----C------eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-chhhHHHHHHHHHHcCCC-cEEEeccCCCCC
Q 006068 118 ----E------NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-PLAQTKFVLAKALKYGLR-PILLLNKVDRPA 185 (662)
Q Consensus 118 ----~------~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~ 185 (662)
+ ++++|||||||.+|...+.+++..+|++++|+|+.++ +..++..++..+...+++ +|+|+||+|+.+
T Consensus 72 ~~~~~~~~~~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~ 151 (203)
T cd01888 72 CPGCGGETKLVRHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVK 151 (203)
T ss_pred ccccCCccccccEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccC
Confidence 3 7899999999999999999999999999999999984 678899999888878874 688999999953
Q ss_pred CCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 186 VSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 186 ~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
.....+..+++.+++..... ..+|++++||++|. |+++|++.|.+.+|.|.
T Consensus 152 --~~~~~~~~~~i~~~~~~~~~----~~~~i~~vSA~~g~--------------gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 152 --EEQALENYEQIKKFVKGTIA----ENAPIIPISAQLKY--------------NIDVLLEYIVKKIPTPP 202 (203)
T ss_pred --HHHHHHHHHHHHHHHhcccc----CCCcEEEEeCCCCC--------------CHHHHHHHHHHhCCCCC
Confidence 33334444555555543321 13679999999998 99999999999999875
No 73
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.93 E-value=5.7e-25 Score=228.47 Aligned_cols=128 Identities=32% Similarity=0.481 Sum_probs=118.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
||+|+||+|+|||||+++|++..|... ...+++|+.+.|+++++|+......+.|++++++|||||||.+|..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~~ 80 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVGE 80 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHHH
Confidence 799999999999999999999877432 23578899999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHH
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (662)
+..+++.+|++++|+|+..+...++..+|+.+...++|.++|+||+|+..++..
T Consensus 81 ~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~~~~~ 134 (268)
T cd04170 81 TRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERADFD 134 (268)
T ss_pred HHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCCCCHH
Confidence 999999999999999999999999999999999999999999999999877653
No 74
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.93 E-value=1.7e-24 Score=210.21 Aligned_cols=171 Identities=44% Similarity=0.679 Sum_probs=140.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCC---CCccccccccccccccceeEeeeEEEEEe-----cCeeEEEEeCCCCccc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGAD---IPHERAMDSISLERERGITIASKVTGISW-----RENELNMVDTPGHADF 132 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~---~~~~~v~D~~~~E~ergiTi~~~~~~~~~-----~~~~iniIDTPGh~dF 132 (662)
|||+++||+|+|||||+++|++..+.. .....++|+...++++|+|+......+.| +++.++|||||||.+|
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~ 80 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChhh
Confidence 799999999999999999999986642 12245678888899999999988777766 4678999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
...+.++++.+|++|+|+|+.++...++...|..+...++|+++|+||+|+.+.+. .+..+++.+ .++...
T Consensus 81 ~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~---~~~~~~~~~---~~~~~~--- 151 (179)
T cd01890 81 SYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADP---ERVKQQIED---VLGLDP--- 151 (179)
T ss_pred HHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCCH---HHHHHHHHH---HhCCCc---
Confidence 99999999999999999999999888888888888888999999999999865433 222233322 223321
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
.+++++||++|. |+++|++.|.+.+|.|
T Consensus 152 -~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~ 179 (179)
T cd01890 152 -SEAILVSAKTGL--------------GVEDLLEAIVERIPPP 179 (179)
T ss_pred -ccEEEeeccCCC--------------CHHHHHHHHHhhCCCC
Confidence 248999999998 9999999999999877
No 75
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.92 E-value=9.4e-24 Score=248.99 Aligned_cols=261 Identities=23% Similarity=0.265 Sum_probs=198.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCe------------------eEE
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN------------------ELN 122 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~------------------~in 122 (662)
.|+..-|-..| ||||+++|.+. ........|||.....+.+.++.. .++
T Consensus 463 ~~~~~~~~~~~-KTtLLD~iR~t------------~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~ 529 (1049)
T PRK14845 463 HNFIANGILVH-NTTLLDKIRKT------------RVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLL 529 (1049)
T ss_pred Ccceeeeeecc-cccHHHHHhCC------------CcccccCCCceeccceEEEEecccccccccccccccccCCcCcEE
Confidence 45544444443 99999999876 234455689999988888876521 289
Q ss_pred EEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC-CCCH-------------
Q 006068 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP-AVSE------------- 188 (662)
Q Consensus 123 iIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~-~~~~------------- 188 (662)
|||||||.+|.....+.++.+|++++|+|+.+|+++||.+++..+...++|+|+|+||+|+. +++.
T Consensus 530 fiDTPGhe~F~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q 609 (1049)
T PRK14845 530 FIDTPGHEAFTSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQ 609 (1049)
T ss_pred EEECCCcHHHHHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhh
Confidence 99999999999888888899999999999999999999999999999999999999999994 4431
Q ss_pred --HHHHHHHHHHHHH---HHhcCCCCc--------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC--
Q 006068 189 --ERCDEVESLVFDL---FANLGATDE--------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP-- 253 (662)
Q Consensus 189 --~~~~ei~~~v~~l---~~~~g~~~~--------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP-- 253 (662)
....++.+++.++ +...|+..+ ..++|++++||++|. |+++|+++|....+
T Consensus 610 ~~~~~~el~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGe--------------GId~Ll~~l~~l~~~~ 675 (1049)
T PRK14845 610 DQHALTELEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGE--------------GIPELLMMVAGLAQKY 675 (1049)
T ss_pred HHHHHHHHHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCC--------------CHHHHHHHHHHhhHHh
Confidence 0112222222222 445555432 235799999999999 99999998864332
Q ss_pred ---CCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeec--------CC
Q 006068 254 ---PPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKK--------GT 322 (662)
Q Consensus 254 ---~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~--------g~ 322 (662)
....++++|+++.|..++.+++.|.++.|.|++|+|++||.|.+.+.++ ....||+.|+... +.
T Consensus 676 l~~~L~~~~~~~~~g~VlEv~~~kG~G~vvt~iv~~G~Lk~GD~iv~g~~~~-----~i~~kVRaLl~p~pl~e~r~~~~ 750 (1049)
T PRK14845 676 LEERLKLNVEGYAKGTILEVKEEKGLGTTIDAIIYDGTLRRGDTIVVGGPDD-----VIVTKVRALLKPKPLDEIRDPRD 750 (1049)
T ss_pred hhhhhccCCCCceEEEEEEEEEecCceeEEEEEEEcCEEecCCEEEEccCCC-----cceEEEEEecCcccccccccccc
Confidence 2344567899999999999999999999999999999999999986432 1357888887532 11
Q ss_pred ceeeecccCCCCEEEEc--CcCCCccCceeeec
Q 006068 323 GMVLIDSAGAGDIISVA--GMTKPSIGHTVANT 353 (662)
Q Consensus 323 ~~~~v~~a~AGdIvai~--gl~~~~~GdTl~~~ 353 (662)
+...++++.|..-|-|. |++++..||.+...
T Consensus 751 ~~~~~~~~~~a~~vki~a~gl~~~~aG~~~~v~ 783 (1049)
T PRK14845 751 KFDPVDEVTAAAGVKIAAPGLEEVLAGSPIRIV 783 (1049)
T ss_pred cccccccccCCCceEEecCCccccCCCCeEEEe
Confidence 34577888887777664 89988889987543
No 76
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.92 E-value=4.4e-24 Score=210.62 Aligned_cols=170 Identities=26% Similarity=0.303 Sum_probs=138.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--------------CeeEEEEeCC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--------------ENELNMVDTP 127 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--------------~~~iniIDTP 127 (662)
||+++||+|+|||||+++|+...+ ...+|....|+++|+|+......+.+. ++.++|||||
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~-----~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dtp 76 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIAS-----TAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCP 76 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccc-----hhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECC
Confidence 899999999999999999997532 234678888999999999988888876 7899999999
Q ss_pred CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHH----HHH
Q 006068 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFD----LFA 203 (662)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~----l~~ 203 (662)
||.+|......+...+|++++|+|+.++...++.+.+..+...+.|+++|+||+|+.... ......+++.+ .+.
T Consensus 77 G~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~--~~~~~~~~~~~~l~~~~~ 154 (192)
T cd01889 77 GHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEE--ERERKIEKMKKKLQKTLE 154 (192)
T ss_pred CcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHH--HHHHHHHHHHHHHHHHHH
Confidence 999998888888899999999999999998898887777777899999999999985322 22223333333 233
Q ss_pred hcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
..+. ..+|++++||++|. |+++|++.|.+.+|.|.
T Consensus 155 ~~~~----~~~~vi~iSa~~g~--------------gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 155 KTRF----KNSPIIPVSAKPGG--------------GEAELGKDLNNLIVLPL 189 (192)
T ss_pred hcCc----CCCCEEEEeccCCC--------------CHHHHHHHHHhcccccc
Confidence 2222 24689999999998 99999999999999885
No 77
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.90 E-value=4.2e-23 Score=208.35 Aligned_cols=177 Identities=21% Similarity=0.188 Sum_probs=140.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCC--ccccccccccccccceeEeeeE------------------------EEEE
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIP--HERAMDSISLERERGITIASKV------------------------TGIS 115 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~--~~~v~D~~~~E~ergiTi~~~~------------------------~~~~ 115 (662)
+|+++||.++|||||+++|......... ....+|.+..|.++|+|+.... ..+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence 4899999999999999999975443221 2345788899999999974333 1233
Q ss_pred ecCeeEEEEeCCCCccchHHHHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHH
Q 006068 116 WRENELNMVDTPGHADFGGEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDE 193 (662)
Q Consensus 116 ~~~~~iniIDTPGh~dF~~ev~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~e 193 (662)
..++.++|+|||||.+|...+.+++. .+|++++|||+.+|+..++++++..+...++|+++|+||+|+. +..++.+
T Consensus 81 ~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~--~~~~~~~ 158 (224)
T cd04165 81 KSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLA--PANILQE 158 (224)
T ss_pred eCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECcccc--CHHHHHH
Confidence 45789999999999999999998886 7999999999999999999999999999999999999999984 4555666
Q ss_pred HHHHHHHHHHhcCCCC-------------------cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 194 VESLVFDLFANLGATD-------------------EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 194 i~~~v~~l~~~~g~~~-------------------~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
..+++.+.+...|+.. ....+|++++||.+|. |++.|.+.| ..+|+
T Consensus 159 ~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~--------------Gi~~L~~~L-~~lp~ 223 (224)
T cd04165 159 TLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGE--------------GLDLLHAFL-NLLPL 223 (224)
T ss_pred HHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCcc--------------CHHHHHHHH-HhcCC
Confidence 7777777765443321 1123699999999999 999888765 67776
Q ss_pred C
Q 006068 255 P 255 (662)
Q Consensus 255 p 255 (662)
|
T Consensus 224 ~ 224 (224)
T cd04165 224 R 224 (224)
T ss_pred C
Confidence 4
No 78
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.89 E-value=5.6e-22 Score=193.38 Aligned_cols=178 Identities=44% Similarity=0.655 Sum_probs=147.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCc----cccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPH----ERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~----~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
||+|+|.+|+|||||+++|+...+..... ...++....+..+++|+......+.+.+..++||||||+.+|...+.
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~ 80 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEVI 80 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHHH
Confidence 58999999999999999999987653322 24566777788899999988888899999999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC-------Cc
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT-------DE 210 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~-------~~ 210 (662)
.+++.+|++++|+|+.++...+...++..+...+.|+++|+||+|+.. ........+++.+.+...+.. ..
T Consensus 81 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (189)
T cd00881 81 RGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVG--EEDLEEVLREIKELLGLIGFISTKEEGTRN 158 (189)
T ss_pred HHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcc--hhcHHHHHHHHHHHHccccccchhhhhccc
Confidence 999999999999999999988889999888888999999999999964 233344555565555544421 01
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
....|++++||++|+ |++++++.|.+.+|.|
T Consensus 159 ~~~~~v~~~Sa~~g~--------------gi~~l~~~l~~~l~~~ 189 (189)
T cd00881 159 GLLVPIVPGSALTGI--------------GVEELLEAIVEHLPPP 189 (189)
T ss_pred CCcceEEEEecccCc--------------CHHHHHHHHHhhCCCC
Confidence 124789999999999 9999999999999865
No 79
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.88 E-value=1.3e-21 Score=186.35 Aligned_cols=160 Identities=29% Similarity=0.387 Sum_probs=127.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-CeeEEEEeCCCCccchHHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-~~~iniIDTPGh~dF~~ev~~~l 140 (662)
+|+++|++|+|||||+++|+... .+..+.+..+++|+......+.+. +..+++|||||+.+|...+..++
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~---------~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~ 72 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIE---------TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEKFIKNMLAGA 72 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcc---------cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHHHHHHHHhhh
Confidence 79999999999999999998541 123344556788888888778876 88999999999999998888889
Q ss_pred hhcceEEEEeeCCCCchhhHHHHHHHHHHcCC-CcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEc
Q 006068 141 GMVEGAILVVDAGEGPLAQTKFVLAKALKYGL-RPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYA 219 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~l-p~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~ 219 (662)
+.+|++++|+|+.++...++...+..+...+. |+++++||+|+... .......+++.+.+...+.. .+|++++
T Consensus 73 ~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 146 (164)
T cd04171 73 GGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE--DWLELVEEEIRELLAGTFLA----DAPIFPV 146 (164)
T ss_pred hcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH--HHHHHHHHHHHHHHHhcCcC----CCcEEEE
Confidence 99999999999999888888888777777777 88999999999542 22233445555555443221 3679999
Q ss_pred ccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 220 SAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 220 SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
||++|. |++++++.+.+
T Consensus 147 Sa~~~~--------------~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGE--------------GIEELKEYLDE 163 (164)
T ss_pred eCCCCc--------------CHHHHHHHHhh
Confidence 999998 99999998753
No 80
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.87 E-value=6.5e-21 Score=203.43 Aligned_cols=217 Identities=24% Similarity=0.308 Sum_probs=164.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch-------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------- 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------- 133 (662)
+.|||+|.+|+|||||+|+|+.+. ..-.+...|+|.+..+....|.++.+.+|||+|..+..
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r-----------~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~ 72 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRR-----------IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQEL 72 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCe-----------eeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHHHHH
Confidence 579999999999999999999873 23345567999999999999999999999999987532
Q ss_pred --HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 134 --GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 134 --~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
.+++.++..||.+|||||+.+|+.+++..+.+.++..+.|+|+|+||+|-.... ....-|..+|+.+
T Consensus 73 i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e---------~~~~efyslG~g~-- 141 (444)
T COG1160 73 IREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAE---------ELAYEFYSLGFGE-- 141 (444)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhh---------hhHHHHHhcCCCC--
Confidence 456788999999999999999999999999999998889999999999975211 1122256778765
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceecc
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSV 291 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~ 291 (662)
++++||.+|. |+.+|+|++++.+| +....+..-. +...--..+||...|+-+.
T Consensus 142 ----~~~ISA~Hg~--------------Gi~dLld~v~~~l~-~~e~~~~~~~--------~~~ikiaiiGrPNvGKSsL 194 (444)
T COG1160 142 ----PVPISAEHGR--------------GIGDLLDAVLELLP-PDEEEEEEEE--------TDPIKIAIIGRPNVGKSSL 194 (444)
T ss_pred ----ceEeehhhcc--------------CHHHHHHHHHhhcC-Cccccccccc--------CCceEEEEEeCCCCCchHH
Confidence 7999999998 99999999999997 4332111100 1111223557777777655
Q ss_pred CCE------EEEeeccCCCCcceEEeEEEeEEeecCCceeeecccC
Q 006068 292 GDK------VHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAG 331 (662)
Q Consensus 292 Gd~------V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~ 331 (662)
... +.+.+. .| .+..-|..-+.++|.+..-++.|+
T Consensus 195 iN~ilgeeR~Iv~~~--aG---TTRD~I~~~~e~~~~~~~liDTAG 235 (444)
T COG1160 195 INAILGEERVIVSDI--AG---TTRDSIDIEFERDGRKYVLIDTAG 235 (444)
T ss_pred HHHhccCceEEecCC--CC---ccccceeeeEEECCeEEEEEECCC
Confidence 433 333322 22 255667778888888888888865
No 81
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.85 E-value=2.9e-20 Score=178.07 Aligned_cols=161 Identities=32% Similarity=0.411 Sum_probs=122.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec---CeeEEEEeCCCCccchHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~---~~~iniIDTPGh~dF~~ev~~ 138 (662)
.|+|+|++|+|||||+++|+.... .....+++|.......+.++ +..+++|||||+.+|...+..
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~ 69 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNV------------AAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRAR 69 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhccc------------ccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHH
Confidence 699999999999999999987622 11233466666666666664 789999999999999888888
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEE
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~ 218 (662)
.+..+|++++|+|+.++...++...+..+...++|+++|+||+|+...+...+ ...+..+... ........+|+++
T Consensus 70 ~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~ 145 (168)
T cd01887 70 GASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERV---KNELSELGLQ-GEDEWGGDVQIVP 145 (168)
T ss_pred HHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceecccccHHHH---HHHHHHhhcc-ccccccCcCcEEE
Confidence 99999999999999999888998888888889999999999999965443322 2222222111 0000112468999
Q ss_pred cccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+||++|. |+++|+++|.++.
T Consensus 146 ~Sa~~~~--------------gi~~l~~~l~~~~ 165 (168)
T cd01887 146 TSAKTGE--------------GIDDLLEAILLLA 165 (168)
T ss_pred eecccCC--------------CHHHHHHHHHHhh
Confidence 9999999 9999999997653
No 82
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.81 E-value=2.9e-19 Score=171.24 Aligned_cols=161 Identities=20% Similarity=0.255 Sum_probs=111.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
||+++|+.|+|||||+++|+........ . ...+...|+......+.+++..+++||||||.+|...+..+++
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~------~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKG------L--PPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLRSLWDKYYA 72 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccC------C--cccccCCccccceEEEEECCEEEEEEECCCChhhHHHHHHHhC
Confidence 6899999999999999999875321000 0 0111233444455667788999999999999999999999999
Q ss_pred hcceEEEEeeCCCCc-hhhHHHHHHHHH----HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGP-LAQTKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~-~~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++++|+|+.+.. ......++..+. ..++|+++++||+|+..... ..+ +.+++...........+++
T Consensus 73 ~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~ 146 (167)
T cd04160 73 ECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALS--VEE----IKEVFQDKAEEIGRRDCLV 146 (167)
T ss_pred CCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCCC--HHH----HHHHhccccccccCCceEE
Confidence 999999999987642 222333444333 24799999999999865321 122 2222222111111224689
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+++||++|. |+++++++|.+
T Consensus 147 ~~~Sa~~g~--------------gv~e~~~~l~~ 166 (167)
T cd04160 147 LPVSALEGT--------------GVREGIEWLVE 166 (167)
T ss_pred EEeeCCCCc--------------CHHHHHHHHhc
Confidence 999999998 99999999864
No 83
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.81 E-value=3.7e-19 Score=167.93 Aligned_cols=149 Identities=27% Similarity=0.337 Sum_probs=116.5
Q ss_pred EEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH--------H
Q 006068 64 AVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG--------E 135 (662)
Q Consensus 64 aIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~--------e 135 (662)
+++|++|+|||||+++|+.... ...+...++|.......+.++++.+++|||||+.++.. +
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~-----------~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 69 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRD-----------AIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQ 69 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcE-----------EeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchhHHHHHHHHH
Confidence 5899999999999999996521 11223456677777777788889999999999998643 5
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
....++.+|++++|+|+.++....+..+++.+...+.|+++|+||+|+.+.+.. ...+..++.. +
T Consensus 70 ~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~~---------~~~~~~~~~~------~ 134 (157)
T cd01894 70 AELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDE---------AAEFYSLGFG------E 134 (157)
T ss_pred HHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHHH---------HHHHHhcCCC------C
Confidence 567788999999999999888777888888888889999999999999653321 1122333331 4
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++++.|.+++
T Consensus 135 ~~~~Sa~~~~--------------gv~~l~~~l~~~~ 157 (157)
T cd01894 135 PIPISAEHGR--------------GIGDLLDAILELL 157 (157)
T ss_pred eEEEecccCC--------------CHHHHHHHHHhhC
Confidence 8999999998 9999999998764
No 84
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.81 E-value=5.4e-19 Score=195.93 Aligned_cols=162 Identities=24% Similarity=0.274 Sum_probs=128.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---- 134 (662)
...+|+++|++|+|||||+++|++.. ........|+|.+.....+.+++..+.||||||+.++..
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~-----------~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~ 239 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEE-----------RVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEG 239 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC-----------eeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhh
Confidence 45789999999999999999999762 222334568888888888888899999999999866532
Q ss_pred -------HHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006068 135 -------EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (662)
Q Consensus 135 -------ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~ 207 (662)
....+++.+|++|+|+|+.++...++..++..+.+.+.|+|+|+||+|+.. +.....++.+++...+..++
T Consensus 240 ~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~-~~~~~~~~~~~~~~~~~~~~- 317 (429)
T TIGR03594 240 VEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVK-DEKTREEFKKELRRKLPFLD- 317 (429)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCC-CHHHHHHHHHHHHHhcccCC-
Confidence 234578899999999999999999999999999999999999999999962 34444455555544433222
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.+|++++||++|+ |++++++.+.+..
T Consensus 318 -----~~~vi~~SA~~g~--------------~v~~l~~~i~~~~ 343 (429)
T TIGR03594 318 -----FAPIVFISALTGQ--------------GVDKLLDAIDEVY 343 (429)
T ss_pred -----CCceEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 2689999999999 8888888887643
No 85
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.81 E-value=1.1e-19 Score=181.98 Aligned_cols=247 Identities=23% Similarity=0.311 Sum_probs=188.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-c--------------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-R-------------------- 117 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~-------------------- 117 (662)
-..||+-+||+-|||||++.++.+- .++ ....|-||.|||...++.... +
T Consensus 37 ATiNIGTIGHVAHGKSTvVkAiSGv-------~Tv--rFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~ 107 (466)
T KOG0466|consen 37 ATINIGTIGHVAHGKSTVVKAISGV-------HTV--RFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKE 107 (466)
T ss_pred eeeeecceeccccCcceeeeeeccc-------eEE--EehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCC
Confidence 3579999999999999999988654 222 445677888998877665432 1
Q ss_pred ----------------CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-chhhHHHHHHHHHHcCCCcE-EEec
Q 006068 118 ----------------ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-PLAQTKFVLAKALKYGLRPI-LLLN 179 (662)
Q Consensus 118 ----------------~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-~~~qt~~~l~~~~~~~lp~I-vviN 179 (662)
-+++.|+|+|||.-+...+.......|+++|++.+++. +++||.+++....-+.++.| ++-|
T Consensus 108 d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQN 187 (466)
T KOG0466|consen 108 DRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQN 187 (466)
T ss_pred CCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEec
Confidence 13688999999998888888888889999999998875 78999999999999999875 5669
Q ss_pred cCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCC
Q 006068 180 KVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASL 259 (662)
Q Consensus 180 KiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~ 259 (662)
|+|+.. .....+..+++..++....++ ..|++++||.-++ |++.+.+.|++.+|-|.+|.
T Consensus 188 KiDli~--e~~A~eq~e~I~kFi~~t~ae----~aPiiPisAQlky--------------NId~v~eyivkkIPvPvRdf 247 (466)
T KOG0466|consen 188 KIDLIK--ESQALEQHEQIQKFIQGTVAE----GAPIIPISAQLKY--------------NIDVVCEYIVKKIPVPVRDF 247 (466)
T ss_pred hhhhhh--HHHHHHHHHHHHHHHhccccC----CCceeeehhhhcc--------------ChHHHHHHHHhcCCCCcccc
Confidence 999953 344455566666666544333 3589999999999 99999999999999999999
Q ss_pred CCCceeEEEeee--------eecccceEEEEEEeeceeccCCEEEEeeccCCCC-cceEE-----eEEEeEEeecCCcee
Q 006068 260 DAPFQMLVTMME--------KDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGT-EKIEE-----GKVTKLMKKKGTGMV 325 (662)
Q Consensus 260 ~~p~~~~V~~~~--------~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~-~~~~~-----~kI~~i~~~~g~~~~ 325 (662)
..|.++.|...+ .+.-.|-++-|.+..|.|+.||.+.+.+.-.+.. +.... .+|.++|. ++.
T Consensus 248 ~s~prlIVIRSFDVNkPG~ev~~lkGgvaggsil~Gvlkvg~~IEiRPGiv~kd~~g~~~C~Pi~SrI~sL~A----E~n 323 (466)
T KOG0466|consen 248 TSPPRLIVIRSFDVNKPGSEVDDLKGGVAGGSILKGVLKVGQEIEIRPGIVTKDENGNIKCRPIFSRIVSLFA----EQN 323 (466)
T ss_pred CCCCcEEEEEeeccCCCCchhhcccCccccchhhhhhhhcCcEEEecCceeeecCCCcEEEeeHHHHHHHHHh----hhc
Confidence 999999886543 3345688999999999999999999876321000 00111 23444443 345
Q ss_pred eecccCCCCEEEE
Q 006068 326 LIDSAGAGDIISV 338 (662)
Q Consensus 326 ~v~~a~AGdIvai 338 (662)
+.+.|.+|-.+++
T Consensus 324 ~L~~AvPGGLIGV 336 (466)
T KOG0466|consen 324 DLQFAVPGGLIGV 336 (466)
T ss_pred cceeecCCceeee
Confidence 7889999998887
No 86
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.80 E-value=1.6e-18 Score=165.98 Aligned_cols=161 Identities=22% Similarity=0.271 Sum_probs=119.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------ 133 (662)
.++|+++|++|+|||||+++|++... ...+..++.|.......+.+++..+++|||||+.++.
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~ 70 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEER-----------VIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGI 70 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccc-----------eeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccH
Confidence 46899999999999999999987632 1122335666666666677788889999999986542
Q ss_pred -----HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 134 -----GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 134 -----~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
.....+++.+|++++|+|+..+...+...++..+...+.|+++++||+|+.........++.+.+.+.+...
T Consensus 71 e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--- 147 (174)
T cd01895 71 EKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFL--- 147 (174)
T ss_pred HHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCccHHHHHHHHHHHHhhcccc---
Confidence 122346678999999999999888888888888888899999999999996543333334444443332211
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
...|++++||+++. |++++++++.+.
T Consensus 148 ---~~~~~~~~Sa~~~~--------------~i~~~~~~l~~~ 173 (174)
T cd01895 148 ---DYAPIVFISALTGQ--------------GVDKLFDAIDEV 173 (174)
T ss_pred ---cCCceEEEeccCCC--------------CHHHHHHHHHHh
Confidence 12579999999998 999999988653
No 87
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=99.80 E-value=1.8e-19 Score=197.49 Aligned_cols=218 Identities=24% Similarity=0.223 Sum_probs=163.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec------------------Cee
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR------------------ENE 120 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~------------------~~~ 120 (662)
+.+-+||+||+|.|||-|++.+-.. ........|||.....+.|... ---
T Consensus 474 RSPIcCilGHVDTGKTKlld~ir~t------------NVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg 541 (1064)
T KOG1144|consen 474 RSPICCILGHVDTGKTKLLDKIRGT------------NVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPG 541 (1064)
T ss_pred CCceEEEeecccccchHHHHHhhcc------------ccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCe
Confidence 3457899999999999999998764 2223334567766555555432 235
Q ss_pred EEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC-CC------CHHH---
Q 006068 121 LNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP-AV------SEER--- 190 (662)
Q Consensus 121 iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~-~~------~~~~--- 190 (662)
+.+||||||..|.....+....||.+|||||..+|+.+||.+-+..++..+.|+||++||+|+. +| +...
T Consensus 542 ~lvIdtpghEsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~lk 621 (1064)
T KOG1144|consen 542 LLVIDTPGHESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEALK 621 (1064)
T ss_pred eEEecCCCchhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHHHH
Confidence 8899999999999999999999999999999999999999999999999999999999999984 11 1110
Q ss_pred ---------HHHHHHHHHHHHHhcCCCCcC--------CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 191 ---------CDEVESLVFDLFANLGATDEQ--------LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 191 ---------~~ei~~~v~~l~~~~g~~~~~--------~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+.+-++.+..-|...|++... --+.++++||.+|. |+.+|+-+|++...
T Consensus 622 kQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGe--------------GipdLl~llv~ltQ 687 (1064)
T KOG1144|consen 622 KQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGE--------------GIPDLLLLLVQLTQ 687 (1064)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCC--------------CcHHHHHHHHHHHH
Confidence 111122233334444443211 12668999999999 99999998886543
Q ss_pred CC---CCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccC
Q 006068 254 PP---KASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITD 302 (662)
Q Consensus 254 ~p---~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~ 302 (662)
.. .-.....+.+.|..+-..++.|..+-.-+..|.|+.||+|.+++.++
T Consensus 688 k~m~~kl~y~~ev~cTVlEVKvieG~GtTIDViLvNG~L~eGD~IvvcG~~G 739 (1064)
T KOG1144|consen 688 KTMVEKLAYVDEVQCTVLEVKVIEGHGTTIDVILVNGELHEGDQIVVCGLQG 739 (1064)
T ss_pred HHHHHHHhhhhheeeEEEEEEeecCCCceEEEEEEcceeccCCEEEEcCCCC
Confidence 21 11123567888989999999999888889999999999999987653
No 88
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.80 E-value=1.4e-18 Score=193.09 Aligned_cols=160 Identities=24% Similarity=0.302 Sum_probs=127.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch-----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG----- 133 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~----- 133 (662)
...+|+|+|++|+|||||+++|++.. .......+|+|.+.....+.+++..+++|||||+.+..
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~-----------~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~ 240 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEE-----------RVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEG 240 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC-----------ceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhH
Confidence 46799999999999999999999762 22334467899988888888899999999999975432
Q ss_pred ------HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006068 134 ------GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (662)
Q Consensus 134 ------~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~ 207 (662)
....++++.+|++|+|+|+.+|...|+..++..+.+.+.|+|+|+||+|+. +.+...++.+++...+....
T Consensus 241 ~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~--~~~~~~~~~~~~~~~l~~~~- 317 (435)
T PRK00093 241 VEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLV--DEKTMEEFKKELRRRLPFLD- 317 (435)
T ss_pred HHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCC--CHHHHHHHHHHHHHhccccc-
Confidence 223467889999999999999999999999999999999999999999985 33334445555544433222
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
.+|++++||++|+ |++++++.+.+.
T Consensus 318 -----~~~i~~~SA~~~~--------------gv~~l~~~i~~~ 342 (435)
T PRK00093 318 -----YAPIVFISALTGQ--------------GVDKLLEAIDEA 342 (435)
T ss_pred -----CCCEEEEeCCCCC--------------CHHHHHHHHHHH
Confidence 3689999999999 888888877653
No 89
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=1.2e-18 Score=186.16 Aligned_cols=162 Identities=20% Similarity=0.281 Sum_probs=136.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d------- 131 (662)
...+|||+|.+|+|||||+|+|+++ +..-.....|+|+++-...++|++.++.+|||.|...
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilge-----------eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~ 245 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGE-----------ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITES 245 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccC-----------ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccc
Confidence 4678999999999999999999998 3455566779999999999999999999999999543
Q ss_pred ---ch-HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006068 132 ---FG-GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (662)
Q Consensus 132 ---F~-~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~ 207 (662)
|. ..+..++..+|.++||+||.+|+..|+..+...+.+.|.++|||+||+|+...+....++..+++...|..+++
T Consensus 246 ~E~~Sv~rt~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~ 325 (444)
T COG1160 246 VEKYSVARTLKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDF 325 (444)
T ss_pred eEEEeehhhHhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCchhhHHHHHHHHHHHHhccccC
Confidence 32 35567888999999999999999999999999999999999999999998665445556666777666666655
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
.|++++||++|. ++..|++++...
T Consensus 326 ------a~i~~iSA~~~~--------------~i~~l~~~i~~~ 349 (444)
T COG1160 326 ------APIVFISALTGQ--------------GLDKLFEAIKEI 349 (444)
T ss_pred ------CeEEEEEecCCC--------------ChHHHHHHHHHH
Confidence 479999999999 777777776543
No 90
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.80 E-value=3.9e-19 Score=168.09 Aligned_cols=147 Identities=25% Similarity=0.364 Sum_probs=109.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch------HH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------GE 135 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------~e 135 (662)
+||++|.+|+|||||+|+|++. +......+|.|+......+.+.+..+.|+|+||.-++. ..
T Consensus 2 ~ialvG~PNvGKStLfN~Ltg~------------~~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~ee~v 69 (156)
T PF02421_consen 2 RIALVGNPNVGKSTLFNALTGA------------KQKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSEEERV 69 (156)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT------------SEEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHCC------------CceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCcHHHH
Confidence 6999999999999999999987 34456678999999999999999999999999965542 12
Q ss_pred HHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 136 VERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 136 v~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+..++ ...|++|+|+||.. ..+...+..++.++|+|+|+++||+|.....- +.-....+-..+ .
T Consensus 70 ~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g-----~~id~~~Ls~~L-------g 135 (156)
T PF02421_consen 70 ARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERKG-----IEIDAEKLSERL-------G 135 (156)
T ss_dssp HHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHTT-----EEE-HHHHHHHH-------T
T ss_pred HHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHcC-----CEECHHHHHHHh-------C
Confidence 22333 57899999999986 56777888999999999999999999732110 000111122222 3
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHH
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I 248 (662)
+|++++||+++. |+++|+++|
T Consensus 136 ~pvi~~sa~~~~--------------g~~~L~~~I 156 (156)
T PF02421_consen 136 VPVIPVSARTGE--------------GIDELKDAI 156 (156)
T ss_dssp S-EEEEBTTTTB--------------THHHHHHHH
T ss_pred CCEEEEEeCCCc--------------CHHHHHhhC
Confidence 689999999999 999999876
No 91
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.79 E-value=2.2e-18 Score=165.14 Aligned_cols=158 Identities=20% Similarity=0.199 Sum_probs=110.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev 136 (662)
..++|+++|+.|+|||||+++|+...... +....+..+.....+.+++ ..++||||||+.+|....
T Consensus 2 ~~~kv~vvG~~~~GKTsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 69 (165)
T cd01864 2 FLFKIILIGDSNVGKTCVVQRFKSGTFSE------------RQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTIT 69 (165)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhhCCCcc------------cCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHH
Confidence 35799999999999999999998652211 1111222233334455555 588999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
...++.+|++++|+|+.+....+.. .++..+.. .++|+|+|+||+|+...+... .++...+....+.
T Consensus 70 ~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~~----~~~~~~~~~~~~~----- 140 (165)
T cd01864 70 QSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVL----FEEACTLAEKNGM----- 140 (165)
T ss_pred HHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccccC----HHHHHHHHHHcCC-----
Confidence 9999999999999999886554443 34444433 368899999999986433211 1222333333332
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.+++++||++|. |++++++.+.+.+
T Consensus 141 -~~~~e~Sa~~~~--------------~v~~~~~~l~~~l 165 (165)
T cd01864 141 -LAVLETSAKESQ--------------NVEEAFLLMATEL 165 (165)
T ss_pred -cEEEEEECCCCC--------------CHHHHHHHHHHhC
Confidence 358999999998 9999999998653
No 92
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.79 E-value=3.4e-18 Score=177.92 Aligned_cols=157 Identities=24% Similarity=0.199 Sum_probs=112.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc--------h
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF--------G 133 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF--------~ 133 (662)
.|+++|++|+|||||+|+|++.... ......++|..........++.++.||||||+.+. .
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~-----------~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~l~~~~~ 70 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKIS-----------ITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHSLNRLMM 70 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEe-----------ecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcchHHHHHH
Confidence 5899999999999999999976321 12223344444333333445678999999997542 2
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
..+..++..+|++++|+|+.++...+ ..++..+...+.|+++|+||+|+. +... ..+.+.++....++
T Consensus 71 ~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~--~~~~---~~~~~~~~~~~~~~------ 138 (270)
T TIGR00436 71 KEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNK--FKDK---LLPLIDKYAILEDF------ 138 (270)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCC--CHHH---HHHHHHHHHhhcCC------
Confidence 23556788999999999998876554 666777778899999999999995 2322 22233333222222
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
.+++++||++|. |+++|++.|.+++|+.
T Consensus 139 ~~v~~iSA~~g~--------------gi~~L~~~l~~~l~~~ 166 (270)
T TIGR00436 139 KDIVPISALTGD--------------NTSFLAAFIEVHLPEG 166 (270)
T ss_pred CceEEEecCCCC--------------CHHHHHHHHHHhCCCC
Confidence 168999999998 9999999999999754
No 93
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=3.3e-18 Score=189.59 Aligned_cols=154 Identities=27% Similarity=0.369 Sum_probs=125.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc--------cch
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA--------DFG 133 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~--------dF~ 133 (662)
+|+|+|++|+|||||+++|++... ...+...|+|.+.....+.|++..++||||||+. .+.
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~-----------~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~~~~~~~~~ 69 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRD-----------AIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIR 69 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCc-----------ceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcchhHHHHHH
Confidence 489999999999999999987631 1233446888888888999999999999999974 344
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
..+..+++.+|++++|+|+.+|....+..+++.+++.+.|+++|+||+|....+.. . .+ +..+|+.
T Consensus 70 ~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~~-----~---~~-~~~lg~~----- 135 (429)
T TIGR03594 70 EQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAV-----A---AE-FYSLGFG----- 135 (429)
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccccc-----H---HH-HHhcCCC-----
Confidence 56777889999999999999999999999999999999999999999998643221 1 11 3344543
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
+++++||++|. |+.+|++.+.+.+|..
T Consensus 136 -~~~~vSa~~g~--------------gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 136 -EPIPISAEHGR--------------GIGDLLDAILELLPEE 162 (429)
T ss_pred -CeEEEeCCcCC--------------ChHHHHHHHHHhcCcc
Confidence 48999999998 9999999999999764
No 94
>PRK15494 era GTPase Era; Provisional
Probab=99.78 E-value=2.9e-18 Score=183.71 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=117.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF------ 132 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF------ 132 (662)
+..+|+++|++|+|||||+++|++.... ......+.|.......+.+++.+++||||||+.+.
T Consensus 51 k~~kV~ivG~~nvGKSTLin~l~~~k~~-----------ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~l~~ 119 (339)
T PRK15494 51 KTVSVCIIGRPNSGKSTLLNRIIGEKLS-----------IVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGSLEK 119 (339)
T ss_pred ceeEEEEEcCCCCCHHHHHHHHhCCcee-----------eccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCcccHHH
Confidence 4569999999999999999999976321 12223455555555566778899999999998542
Q ss_pred --hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 133 --GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 133 --~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
......++..+|++|+|+|+.++....+..++..+...+.|+|+|+||+|+.... .. ++.+.+...+.
T Consensus 120 ~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~~---~~----~~~~~l~~~~~--- 189 (339)
T PRK15494 120 AMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESKY---LN----DIKAFLTENHP--- 189 (339)
T ss_pred HHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcccc---HH----HHHHHHHhcCC---
Confidence 1223345789999999999998887777778888888889999999999985421 12 22233332221
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
..+++++||++|. |+++|+++|.+++|.
T Consensus 190 --~~~i~~iSAktg~--------------gv~eL~~~L~~~l~~ 217 (339)
T PRK15494 190 --DSLLFPISALSGK--------------NIDGLLEYITSKAKI 217 (339)
T ss_pred --CcEEEEEeccCcc--------------CHHHHHHHHHHhCCC
Confidence 2368999999998 999999999999875
No 95
>COG1159 Era GTPase [General function prediction only]
Probab=99.77 E-value=4.3e-18 Score=172.97 Aligned_cols=160 Identities=24% Similarity=0.253 Sum_probs=121.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc--------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------- 131 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d-------- 131 (662)
.--|||+|.+|+|||||+|+|+++. -........+|...-..-+..++.++.++||||...
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~K-----------isIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~ 74 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQK-----------ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGEL 74 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCc-----------eEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHH
Confidence 3469999999999999999999883 222333344555544555566789999999999432
Q ss_pred chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH-hcCCCCc
Q 006068 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA-NLGATDE 210 (662)
Q Consensus 132 F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~-~~g~~~~ 210 (662)
....+..++..+|.++||||+.++..+.++.++..++..+.|+|+++||+|+..... .+. .+.+.+. ...+.
T Consensus 75 m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~-~l~----~~~~~~~~~~~f~-- 147 (298)
T COG1159 75 MNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKT-VLL----KLIAFLKKLLPFK-- 147 (298)
T ss_pred HHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHH-HHH----HHHHHHHhhCCcc--
Confidence 345677888999999999999999999999999999887889999999999854322 111 2222222 22232
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
.++++||++|. |++.|++.+..++|.-
T Consensus 148 ----~ivpiSA~~g~--------------n~~~L~~~i~~~Lpeg 174 (298)
T COG1159 148 ----EIVPISALKGD--------------NVDTLLEIIKEYLPEG 174 (298)
T ss_pred ----eEEEeeccccC--------------CHHHHHHHHHHhCCCC
Confidence 48999999998 9999999999999853
No 96
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.77 E-value=5e-18 Score=162.45 Aligned_cols=154 Identities=19% Similarity=0.248 Sum_probs=110.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|++|+|||||+++|+........ ....+.++......+..+...++||||||+..|......+++
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 71 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQ----------LSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYH 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc----------CCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhC
Confidence 7999999999999999999976322111 111233444334444445678999999999999999999999
Q ss_pred hcceEEEEeeCCCCchhhHH-HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEE
Q 006068 142 MVEGAILVVDAGEGPLAQTK-FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~-~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~ 218 (662)
.+|++|+|+|+.+....+.. .++..+.+. ++|+++|+||+|+... ...+...+.... .+|+++
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------~~~~~~~~~~~~-------~~~~~~ 137 (161)
T cd04124 72 KAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPS-------VTQKKFNFAEKH-------NLPLYY 137 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchh-------HHHHHHHHHHHc-------CCeEEE
Confidence 99999999999876654443 445555444 7899999999998421 111222222222 357999
Q ss_pred cccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+||++|. |++++++.+.+.+.
T Consensus 138 ~Sa~~~~--------------gv~~l~~~l~~~~~ 158 (161)
T cd04124 138 VSAADGT--------------NVVKLFQDAIKLAV 158 (161)
T ss_pred EeCCCCC--------------CHHHHHHHHHHHHH
Confidence 9999998 99999999987654
No 97
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=99.77 E-value=1.9e-18 Score=177.14 Aligned_cols=270 Identities=18% Similarity=0.225 Sum_probs=195.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCc--cccccccccccccceeEee--eE-----------------EEEEec--
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPH--ERAMDSISLERERGITIAS--KV-----------------TGISWR-- 117 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~--~~v~D~~~~E~ergiTi~~--~~-----------------~~~~~~-- 117 (662)
.+||++|.+|+|||||+..|....-..... ..-+-.+..|.|.|.|... .. .+++|-
T Consensus 134 ~RVAVVGNVDAGKSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkI 213 (641)
T KOG0463|consen 134 ARVAVVGNVDAGKSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKI 213 (641)
T ss_pred EEEEEEecccCCcceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccceee
Confidence 479999999999999999887653211110 0011122333333333221 11 122331
Q ss_pred ----CeeEEEEeCCCCccchHHHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHH
Q 006068 118 ----ENELNMVDTPGHADFGGEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERC 191 (662)
Q Consensus 118 ----~~~iniIDTPGh~dF~~ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~ 191 (662)
...|+|||..||+.|...+.-.+ .+.|..+|+|-|+.|+...|++++..|..+.+|+++|++|+|...+ ..+
T Consensus 214 ce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPA--NiL 291 (641)
T KOG0463|consen 214 CEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPA--NIL 291 (641)
T ss_pred ccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcH--HHH
Confidence 24689999999999876655444 4679999999999999999999999999999999999999999554 445
Q ss_pred HHHHHHHHHHHHhcCCCCc-------------------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 192 DEVESLVFDLFANLGATDE-------------------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 192 ~ei~~~v~~l~~~~g~~~~-------------------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|..+.+..+++..|+..- ..-||+|.+|..+|. +++ ||.+.++.+
T Consensus 292 qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~--------------NL~-LLkmFLNll 356 (641)
T KOG0463|consen 292 QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGT--------------NLP-LLKMFLNLL 356 (641)
T ss_pred HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCC--------------ChH-HHHHHHhhc
Confidence 6666666677665554211 113789999999997 664 777777777
Q ss_pred CCC-CCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccC
Q 006068 253 PPP-KASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAG 331 (662)
Q Consensus 253 P~p-~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~ 331 (662)
+.. ....+.|..++|.+++..+++|+++.|...+|+|+.+|.+...+...+ .+-...|++|. +++.+|..+.
T Consensus 357 s~R~~~~E~~PAeFQIDD~Y~VpGVGTvvSGT~L~GtIrLND~LlLGPd~~G---~F~pI~iKSIH----RKRMpV~~Vr 429 (641)
T KOG0463|consen 357 SLRRQLNENDPAEFQIDDIYWVPGVGTVVSGTLLSGTIRLNDILLLGPDSNG---DFMPIPIKSIH----RKRMPVGIVR 429 (641)
T ss_pred CcccccccCCCcceeecceEecCCcceEeecceeeeeEEeccEEEecCCCCC---Ceeeeehhhhh----hccccceEEe
Confidence 643 335678999999999999999999999999999999999998875433 34566677775 4567999999
Q ss_pred CCCEEE--EcCcC--CCccCceeeecC
Q 006068 332 AGDIIS--VAGMT--KPSIGHTVANTE 354 (662)
Q Consensus 332 AGdIva--i~gl~--~~~~GdTl~~~~ 354 (662)
+|+-.. +.+++ +++.|.++.++.
T Consensus 430 cGQtASFALKKIkr~~vRKGMVmVsp~ 456 (641)
T KOG0463|consen 430 CGQTASFALKKIKRKDVRKGMVMVSPK 456 (641)
T ss_pred ccchhhhHhhhcchhhhhcceEEecCC
Confidence 999864 45554 678899888765
No 98
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.77 E-value=1e-17 Score=159.69 Aligned_cols=156 Identities=20% Similarity=0.215 Sum_probs=106.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|.+|+|||||++++++.........+..+ . ......+......+++|||||+.+|......++
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~----------~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 71 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED----------S-YTKQCEIDGQWAILDILDTAGQEEFSAMREQYM 71 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccc----------e-EEEEEEECCEEEEEEEEECCCCcchhHHHHHHH
Confidence 58999999999999999999976432221111100 0 111122333346799999999999999999999
Q ss_pred hhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+|++++|+|+.+....+. ..++..... .++|+++|+||+|+....... .++...+....+ +|
T Consensus 72 ~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~~~----~~~~~~~~~~~~-------~~ 140 (164)
T cd04145 72 RTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVS----REEGQELARKLK-------IP 140 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccceec----HHHHHHHHHHcC-------Cc
Confidence 99999999999987543322 223333332 378999999999986432111 112223333322 46
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++|+.|.+.+
T Consensus 141 ~~~~Sa~~~~--------------~i~~l~~~l~~~~ 163 (164)
T cd04145 141 YIETSAKDRL--------------NVDKAFHDLVRVI 163 (164)
T ss_pred EEEeeCCCCC--------------CHHHHHHHHHHhh
Confidence 8999999998 9999999998764
No 99
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.77 E-value=9.6e-18 Score=187.74 Aligned_cols=156 Identities=28% Similarity=0.360 Sum_probs=123.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d------- 131 (662)
..++|+|+|.+|+|||||+++|++... ...+...|+|.+.....+.|.+..++||||||+..
T Consensus 37 ~~~~V~IvG~~nvGKSSL~nrl~~~~~-----------~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~ 105 (472)
T PRK03003 37 PLPVVAVVGRPNVGKSTLVNRILGRRE-----------AVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDAKGLQA 105 (472)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCcCc-----------ccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcchhHHH
Confidence 457899999999999999999997521 12334568888888888889999999999999863
Q ss_pred -chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 132 -FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 132 -F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
|...+..+++.||++|+|+|+.++.......++..+...+.|+|+|+||+|+.....+ ..+ +..+++..
T Consensus 106 ~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~~~--------~~~-~~~~g~~~- 175 (472)
T PRK03003 106 SVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGEAD--------AAA-LWSLGLGE- 175 (472)
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccchh--------hHH-HHhcCCCC-
Confidence 4445667889999999999999998887888888888889999999999998643211 111 22334432
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.+++||++|. |+++|++.|.+.++.
T Consensus 176 -----~~~iSA~~g~--------------gi~eL~~~i~~~l~~ 200 (472)
T PRK03003 176 -----PHPVSALHGR--------------GVGDLLDAVLAALPE 200 (472)
T ss_pred -----eEEEEcCCCC--------------CcHHHHHHHHhhccc
Confidence 4689999998 999999999999876
No 100
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.77 E-value=9.7e-18 Score=161.02 Aligned_cols=154 Identities=19% Similarity=0.246 Sum_probs=104.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCe-eEEEEeCCCCcc-------ch
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHAD-------FG 133 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~-~iniIDTPGh~d-------F~ 133 (662)
||+|+|++|+|||||+++|..... ......+.|+......+.+++. +++||||||+.+ +.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~------------~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~ 69 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP------------KIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLG 69 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc------------cccCCCccccCCcceEEEcCCCCeEEEEecCcccCcccccCCch
Confidence 799999999999999999986421 1112234455555555667776 999999999743 33
Q ss_pred HHHHHHHhhcceEEEEeeCCCC-chhhH-HHHHHHHHH-----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 134 GEVERVVGMVEGAILVVDAGEG-PLAQT-KFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G-~~~qt-~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
....+.+..+|++++|+|+.+. -..+. ..+.+.+.. .+.|+++|+||+|+..... ..+.+.+++...
T Consensus 70 ~~~~~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----~~~~~~~~~~~~- 143 (170)
T cd01898 70 HRFLRHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----LFELLKELLKEL- 143 (170)
T ss_pred HHHHHHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchh-----hHHHHHHHHhhC-
Confidence 4445556679999999999886 23333 334444443 2689999999999854322 112222222221
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
...+++++||+++. |++++++.|.+.+
T Consensus 144 -----~~~~~~~~Sa~~~~--------------gi~~l~~~i~~~~ 170 (170)
T cd01898 144 -----WGKPVFPISALTGE--------------GLDELLRKLAELL 170 (170)
T ss_pred -----CCCCEEEEecCCCC--------------CHHHHHHHHHhhC
Confidence 13569999999998 9999999987653
No 101
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=8.3e-18 Score=188.25 Aligned_cols=162 Identities=23% Similarity=0.256 Sum_probs=122.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d------- 131 (662)
..++|+|+|++|+|||||+++|+... ....+...|+|.+.....+.+++..+.||||||+.+
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~-----------~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~ 278 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEE-----------RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASG 278 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCC-----------cccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccch
Confidence 46899999999999999999999762 122334568888777777888899999999999632
Q ss_pred --chHH--HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006068 132 --FGGE--VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (662)
Q Consensus 132 --F~~e--v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~ 207 (662)
|... ...+++.+|++|+|+|+.++...+...++..+...+.|+|+|+||+|+.... ......+++.+.+....
T Consensus 279 ~e~~~~~~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~--~~~~~~~~i~~~l~~~~- 355 (472)
T PRK03003 279 HEYYASLRTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDED--RRYYLEREIDRELAQVP- 355 (472)
T ss_pred HHHHHHHHHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChh--HHHHHHHHHHHhcccCC-
Confidence 2221 1346789999999999999999999999999988999999999999996422 22223333333222211
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.+|++++||++|. |++++++.+.+.+.
T Consensus 356 -----~~~~~~~SAk~g~--------------gv~~lf~~i~~~~~ 382 (472)
T PRK03003 356 -----WAPRVNISAKTGR--------------AVDKLVPALETALE 382 (472)
T ss_pred -----CCCEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 2579999999999 88888888876553
No 102
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.75 E-value=1.7e-17 Score=160.52 Aligned_cols=155 Identities=19% Similarity=0.220 Sum_probs=107.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+++|++|+|||||+++|+.... ...+...|. ....+.+++..+++|||||+..|...+..
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~-----------~~~~~t~g~----~~~~~~~~~~~l~l~D~~G~~~~~~~~~~ 77 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDI-----------DTISPTLGF----QIKTLEYEGYKLNIWDVGGQKTLRPYWRN 77 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCC-----------CCcCCcccc----ceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 346899999999999999999986511 111111222 22345566889999999999999888889
Q ss_pred HHhhcceEEEEeeCCCCch-hhHHHHHHHH----HHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKA----LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~----~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+|++++|+|+.+.-. .+...++... ...+.|+++|+||+|+.+... .+++.+++..... ....
T Consensus 78 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~------~~~~~~~~~~~~~--~~~~ 149 (173)
T cd04154 78 YFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALS------EEEIREALELDKI--SSHH 149 (173)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCCC------HHHHHHHhCcccc--CCCc
Confidence 9999999999999987622 2222333332 235789999999999865321 1222233321111 1124
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+|++++||++|. |++++++++.+
T Consensus 150 ~~~~~~Sa~~g~--------------gi~~l~~~l~~ 172 (173)
T cd04154 150 WRIQPCSAVTGE--------------GLLQGIDWLVD 172 (173)
T ss_pred eEEEeccCCCCc--------------CHHHHHHHHhc
Confidence 689999999998 99999999864
No 103
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.75 E-value=8.1e-18 Score=159.27 Aligned_cols=148 Identities=24% Similarity=0.299 Sum_probs=109.2
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH------HHH
Q 006068 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE------VER 138 (662)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e------v~~ 138 (662)
|+|++|+|||||+++|++.. ......+++|+......+.+++..+++|||||+.+|... ...
T Consensus 1 l~G~~~~GKssl~~~~~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~ 68 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGAR------------QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARD 68 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCc------------ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCChhHHHHHH
Confidence 58999999999999997652 122234688888888888888899999999999887642 344
Q ss_pred HHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 139 VVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 139 ~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
++. .+|++|+|+|+.+. .+...++..+.+.++|+++|+||+|+.+.... . .....+...++ +|+
T Consensus 69 ~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~--~---~~~~~~~~~~~-------~~~ 134 (158)
T cd01879 69 FLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPVVVALNMIDEAEKRGI--K---IDLDKLSELLG-------VPV 134 (158)
T ss_pred HhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCEEEEEehhhhcccccc--h---hhHHHHHHhhC-------CCe
Confidence 454 89999999999873 33445566677789999999999999653321 1 11112222222 479
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+++||++|. |++++++.+.+..
T Consensus 135 ~~iSa~~~~--------------~~~~l~~~l~~~~ 156 (158)
T cd01879 135 VPTSARKGE--------------GIDELKDAIAELA 156 (158)
T ss_pred EEEEccCCC--------------CHHHHHHHHHHHh
Confidence 999999998 9999999987653
No 104
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.75 E-value=2.3e-17 Score=158.20 Aligned_cols=153 Identities=16% Similarity=0.137 Sum_probs=104.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG------ 134 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~------ 134 (662)
++|+++|++|+|||||+++|+.... ..+...+.|.......+.+++.+++||||||+.++..
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 68 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKP------------EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTI 68 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCC------------ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchH
Confidence 5899999999999999999987621 1112235555566666677789999999999854211
Q ss_pred --HHHHH-HhhcceEEEEeeCCCCch---hhHHHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 135 --EVERV-VGMVEGAILVVDAGEGPL---AQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 135 --ev~~~-l~~aD~aIlVVDa~~G~~---~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
....+ ...+|++|+|+|+.+... .....++..+... +.|+|+|+||+|+..... ..+ ..++. ..
T Consensus 69 ~~~~~~~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~--~~~----~~~~~-~~- 140 (168)
T cd01897 69 EMQAITALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFED--LSE----IEEEE-EL- 140 (168)
T ss_pred HHHHHHHHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchhh--HHH----HHHhh-hh-
Confidence 11111 234689999999876432 2233455566555 799999999999954321 111 11211 11
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
..+|++++||++|. |+++++++|.+.+
T Consensus 141 -----~~~~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 167 (168)
T cd01897 141 -----EGEEVLKISTLTEE--------------GVDEVKNKACELL 167 (168)
T ss_pred -----ccCceEEEEecccC--------------CHHHHHHHHHHHh
Confidence 13579999999999 9999999998764
No 105
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.75 E-value=2.4e-17 Score=157.41 Aligned_cols=156 Identities=21% Similarity=0.192 Sum_probs=106.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+|+|++|+|||||+++|+..........+..|. ......+......+++|||||+.+|.......++
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~-----------~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~ 70 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDS-----------YRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMR 70 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhh-----------EEEEEEECCEEEEEEEEECCCcccchHHHHHHHh
Confidence 79999999999999999999764432222221111 1112222223468899999999999999999999
Q ss_pred hcceEEEEeeCCCCchhhHH-HHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGPLAQTK-FVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~-~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++++|+|+.+....+.. .++....+ .+.|+++|+||+|+....... .++...+.... .+|+
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~~----~~~~~~~~~~~-------~~~~ 139 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVS----TEEGKELARQW-------GCPF 139 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceEc----HHHHHHHHHHc-------CCEE
Confidence 99999999999875333222 22333322 368999999999986432111 11222222222 2579
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++||++|. |++++++.|++.+.
T Consensus 140 ~~~Sa~~~~--------------~i~~l~~~l~~~~~ 162 (164)
T smart00173 140 LETSAKERV--------------NVDEAFYDLVREIR 162 (164)
T ss_pred EEeecCCCC--------------CHHHHHHHHHHHHh
Confidence 999999998 99999999987764
No 106
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.75 E-value=1.7e-17 Score=157.80 Aligned_cols=153 Identities=18% Similarity=0.260 Sum_probs=104.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..++|||||+++|........ ......|.+ ...+.+++..+++|||||+.+|...+..+++
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~---------~~~~t~g~~----~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 67 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQ---------IIVPTVGFN----VESFEKGNLSFTAFDMSGQGKYRGLWEHYYK 67 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcc---------eecCccccc----eEEEEECCEEEEEEECCCCHhhHHHHHHHHc
Confidence 589999999999999999987521100 011111222 2335577899999999999999999999999
Q ss_pred hcceEEEEeeCCCCchh-hHHHHHHHHH------HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Q 006068 142 MVEGAILVVDAGEGPLA-QTKFVLAKAL------KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~-qt~~~l~~~~------~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~-~~~~ 213 (662)
.+|++|+|+|+.+.... ....++..+. ..++|+++|+||+|+.+.... . ++.+.+ +... ....
T Consensus 68 ~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~--~----~~~~~l---~~~~~~~~~ 138 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTA--V----KITQLL---GLENIKDKP 138 (162)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCCH--H----HHHHHh---CCccccCce
Confidence 99999999999876432 2223333332 247899999999999653221 1 111111 1110 1123
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
++++++||++|. |+++++++|.+
T Consensus 139 ~~~~~~Sa~~g~--------------gv~~~~~~l~~ 161 (162)
T cd04157 139 WHIFASNALTGE--------------GLDEGVQWLQA 161 (162)
T ss_pred EEEEEeeCCCCC--------------chHHHHHHHhc
Confidence 568999999999 99999999864
No 107
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.75 E-value=2.2e-17 Score=157.45 Aligned_cols=158 Identities=17% Similarity=0.212 Sum_probs=112.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|++++|||||+++|+....... .....|.+.......+...+..++||||||+.+|.......+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSEN----------QESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYY 71 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHh
Confidence 3799999999999999999997632211 122234444444445555567899999999999988888889
Q ss_pred hhcceEEEEeeCCCCc-hhhHHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 141 GMVEGAILVVDAGEGP-LAQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
+.+|++|+|+|+.+.. ..+...++..+... ++|+++++||+|+....... .+++..+....+ +++
T Consensus 72 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~~----~~~~~~~~~~~~-------~~~ 140 (163)
T cd01860 72 RGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVS----TEEAQEYADENG-------LLF 140 (163)
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccCcCC----HHHHHHHHHHcC-------CEE
Confidence 9999999999987653 23344455555544 47789999999986422111 112223333332 469
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++||++|. |+.++++.|.+.+|
T Consensus 141 ~~~Sa~~~~--------------~v~~l~~~l~~~l~ 163 (163)
T cd01860 141 FETSAKTGE--------------NVNELFTEIAKKLP 163 (163)
T ss_pred EEEECCCCC--------------CHHHHHHHHHHHhC
Confidence 999999998 99999999998874
No 108
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.75 E-value=2e-17 Score=169.70 Aligned_cols=270 Identities=20% Similarity=0.220 Sum_probs=200.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCC-ccc-cccccccccccceeEeeeEEEEEec---------------------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIP-HER-AMDSISLERERGITIASKVTGISWR--------------------- 117 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-~~~-v~D~~~~E~ergiTi~~~~~~~~~~--------------------- 117 (662)
.++|++|..|+|||||+..|....-.... ..+ -+-.++.|...|.|....+..+-++
T Consensus 168 vRvAVlGg~D~GKSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~S 247 (591)
T KOG1143|consen 168 VRVAVLGGCDVGKSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKS 247 (591)
T ss_pred EEEEEecCcccCcceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhh
Confidence 47999999999999999999865432111 111 1223444555555543332222211
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhh--cceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHH
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVE 195 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~--aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~ 195 (662)
...++|||..||..|...+..+|.. .|.++|||+|..|+.-.|++++-.+..+++|++|+++|+|+ .+...++...
T Consensus 248 SKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl--~~~~~~~~tv 325 (591)
T KOG1143|consen 248 SKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTKMDL--VDRQGLKKTV 325 (591)
T ss_pred cceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEeecc--ccchhHHHHH
Confidence 3468999999999998877777754 58899999999999999999999999999999999999999 4555667778
Q ss_pred HHHHHHHHhcCCCCcC-------------------CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 196 SLVFDLFANLGATDEQ-------------------LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 196 ~~v~~l~~~~g~~~~~-------------------~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
+++.+++...|+.... .-+|++.+|..+|. |++ |+..++..+|+..
T Consensus 326 ~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGe--------------gl~-ll~~fLn~Lsp~~ 390 (591)
T KOG1143|consen 326 KDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGE--------------GLR-LLRTFLNCLSPAG 390 (591)
T ss_pred HHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCcc--------------chh-HHHHHHhhcCCcC
Confidence 8888888777653211 12799999999998 765 5566667776543
Q ss_pred CC------CCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeeccc
Q 006068 257 AS------LDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSA 330 (662)
Q Consensus 257 ~~------~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a 330 (662)
.. ...|..++|..++..+.+|.++-|.+.+|.++.|+.+.+.|.+++ .+.+.+|.+|.. ++.++..+
T Consensus 391 ~~~e~~~L~q~~~eFqvdEiy~Vp~VG~VVGG~Ls~G~l~Eg~~~~vGP~~DG---~F~~itV~sI~R----nr~acrvv 463 (591)
T KOG1143|consen 391 TAEERIQLVQLPAEFQVDEIYNVPHVGQVVGGMLSEGQLHEGADVLVGPMKDG---TFEKITVGSIRR----NRQACRVV 463 (591)
T ss_pred ChHHHHHHhcCcceeeHhHeecCCcccccccceeeeceeccCceeEeecCCCC---ceeEEEeeeeec----cccceeee
Confidence 21 235778899999999999999999999999999999999987654 567778888864 45678888
Q ss_pred CCCCEEEEc-CcC---CCccCceeeecC
Q 006068 331 GAGDIISVA-GMT---KPSIGHTVANTE 354 (662)
Q Consensus 331 ~AGdIvai~-gl~---~~~~GdTl~~~~ 354 (662)
.||+-..++ +.. .++.|.++...+
T Consensus 464 raGqaAslsl~d~D~~~LR~GMVl~~~~ 491 (591)
T KOG1143|consen 464 RAGQAASLSLNDPDGVSLRRGMVLAEID 491 (591)
T ss_pred cCccceeeeccCCCccchhcceEEeecC
Confidence 999987764 221 356688776654
No 109
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.75 E-value=2.7e-17 Score=156.65 Aligned_cols=153 Identities=17% Similarity=0.215 Sum_probs=105.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe----cCeeEEEEeCCCCccchHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW----RENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~----~~~~iniIDTPGh~dF~~ev~ 137 (662)
+|+++|..++|||||+++|+........ .+.+........+.+ ...+++||||||+.+|.....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 69 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKDY------------KKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITK 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCC------------CCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHH
Confidence 6999999999999999999876332111 112222221222222 357899999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhHHHHHH-HHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTKFVLA-KALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~~~l~-~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
.+++.+|++++|+|+.+....+....|. .+.. .++|+++|+||+|+....... .++...+...++ +
T Consensus 70 ~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v~----~~~~~~~~~~~~-------~ 138 (162)
T cd04106 70 AYYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVIT----NEEAEALAKRLQ-------L 138 (162)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccccCCC----HHHHHHHHHHcC-------C
Confidence 9999999999999998765444443333 2322 378999999999985422111 122223333333 5
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
|++++||++|. |++++++.|.+.
T Consensus 139 ~~~~~Sa~~~~--------------~v~~l~~~l~~~ 161 (162)
T cd04106 139 PLFRTSVKDDF--------------NVTELFEYLAEK 161 (162)
T ss_pred eEEEEECCCCC--------------CHHHHHHHHHHh
Confidence 79999999998 999999998753
No 110
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.75 E-value=1.8e-17 Score=157.96 Aligned_cols=155 Identities=21% Similarity=0.200 Sum_probs=108.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|++++|||||+++|+.......... ..+.........+......++||||||+.+|.......++
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~ 71 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQH----------TIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCC----------ceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhc
Confidence 799999999999999999997643211111 1122223333333334468999999999999998999999
Q ss_pred hcceEEEEeeCCCCchhhHHH-HHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 142 MVEGAILVVDAGEGPLAQTKF-VLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~~-~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
.+|++|+|+|+.+....+... ++..... .++|+++++||+|+...... ..+++..+....+ ++++
T Consensus 72 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----~~~~~~~~~~~~~-------~~~~ 140 (161)
T cd04113 72 GAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREV----TFLEASRFAQENG-------LLFL 140 (161)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchhccC----CHHHHHHHHHHcC-------CEEE
Confidence 999999999998876554433 3343332 47899999999998542211 1222333343333 4699
Q ss_pred EcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
++||++|. |++++++.+.+.
T Consensus 141 ~~Sa~~~~--------------~i~~~~~~~~~~ 160 (161)
T cd04113 141 ETSALTGE--------------NVEEAFLKCARS 160 (161)
T ss_pred EEECCCCC--------------CHHHHHHHHHHh
Confidence 99999998 999999998764
No 111
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.74 E-value=3.3e-17 Score=156.07 Aligned_cols=155 Identities=20% Similarity=0.196 Sum_probs=109.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~~~ 139 (662)
+|+++|++|+|||||+++|+.... .....+.++.......+.+.+ ..+++|||||+..|.......
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 69 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDGKF------------SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSY 69 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC------------CCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHH
Confidence 799999999999999999986632 111222333333333444444 688999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhhHHH-HHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPLAQTKF-VLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++.+|++|+|+|+.+....+... ++..... .++|+++|+||+|+....... .+.+..+....+ ++
T Consensus 70 ~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~~----~~~~~~~~~~~~-------~~ 138 (164)
T smart00175 70 YRGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVS----REEAEAFAEEHG-------LP 138 (164)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcccccCCC----HHHHHHHHHHcC-------Ce
Confidence 99999999999998765544433 3344433 368999999999985422111 111222222222 56
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++||++|. |++++++.|.+.++
T Consensus 139 ~~e~Sa~~~~--------------~i~~l~~~i~~~~~ 162 (164)
T smart00175 139 FFETSAKTNT--------------NVEEAFEELAREIL 162 (164)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHHh
Confidence 9999999998 99999999988764
No 112
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.74 E-value=3.8e-17 Score=157.12 Aligned_cols=156 Identities=19% Similarity=0.168 Sum_probs=108.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+++|.+|+|||||+++++..........+ .+++. ....+.++ ...+++|||||+.+|.....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t----------~~~~~--~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~ 70 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFIST----------IGIDF--KIRTIELDGKKIKLQIWDTAGQERFRTITT 70 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCcCCcccccC----------ccceE--EEEEEEECCEEEEEEEEeCCchHHHHHHHH
Confidence 579999999999999999999976432221111 12222 22233333 36789999999999998888
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
..++.+|++|+|+|+.++...+. ..++..+.. .++|+++|+||+|+.+..... .++...+.... .
T Consensus 71 ~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~ 139 (167)
T cd01867 71 AYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVS----KEEGEALADEY-------G 139 (167)
T ss_pred HHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC----HHHHHHHHHHc-------C
Confidence 99999999999999987544333 334444443 367899999999996432111 12222333322 2
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||++|. |++++|+.+.+.+
T Consensus 140 ~~~~~~Sa~~~~--------------~v~~~~~~i~~~~ 164 (167)
T cd01867 140 IKFLETSAKANI--------------NVEEAFFTLAKDI 164 (167)
T ss_pred CEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 579999999998 9999999998754
No 113
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.74 E-value=3e-17 Score=182.29 Aligned_cols=154 Identities=26% Similarity=0.366 Sum_probs=120.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc--------c
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD--------F 132 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d--------F 132 (662)
++|+|+|++|+|||||+++|++... .......|+|.+.....+.|.+..++||||||+.+ +
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~-----------~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~ 70 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRD-----------AIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDDGFEKQI 70 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-----------eeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcchhHHHHH
Confidence 4799999999999999999986521 11223457888888888889999999999999988 2
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
...+..++..+|++|+|+|+.++....+..++..+.+.+.|+|+|+||+|..... ....+ +..+|+.
T Consensus 71 ~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~~--------~~~~~-~~~lg~~---- 137 (435)
T PRK00093 71 REQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDEE--------ADAYE-FYSLGLG---- 137 (435)
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccch--------hhHHH-HHhcCCC----
Confidence 3345677889999999999999988888888888888899999999999974311 11112 2234442
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.++++||++|. |+++|++.|.+..+.
T Consensus 138 --~~~~iSa~~g~--------------gv~~l~~~I~~~~~~ 163 (435)
T PRK00093 138 --EPYPISAEHGR--------------GIGDLLDAILEELPE 163 (435)
T ss_pred --CCEEEEeeCCC--------------CHHHHHHHHHhhCCc
Confidence 26899999998 999999999885544
No 114
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.74 E-value=5.2e-17 Score=154.52 Aligned_cols=155 Identities=17% Similarity=0.161 Sum_probs=109.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~~ 138 (662)
++|+++|++++|||||+++|+..... .+...+++.+.....+.+++ .++++|||||+..|...+..
T Consensus 1 ~ki~liG~~~~GKSsli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~ 68 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTFD------------NQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPS 68 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCCC------------ccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHH
Confidence 37999999999999999999976321 12333444444444455544 57999999999999998999
Q ss_pred HHhhcceEEEEeeCCCCchhhHH-HHHHHHH-Hc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK-FVLAKAL-KY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~-~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
.++.+|++++|+|+.+....+.. .++.... .. +.|+++++||+|....... ..++...+.... .+
T Consensus 69 ~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~----~~~~~~~~~~~~-------~~ 137 (161)
T cd01861 69 YIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV----STEEGEKKAKEL-------NA 137 (161)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccccCcc----CHHHHHHHHHHh-------CC
Confidence 99999999999999876544433 3333332 33 3899999999999532211 112222222222 25
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+++++||++|. |+++++++|.+.+
T Consensus 138 ~~~~~Sa~~~~--------------~v~~l~~~i~~~l 161 (161)
T cd01861 138 MFIETSAKAGH--------------NVKELFRKIASAL 161 (161)
T ss_pred EEEEEeCCCCC--------------CHHHHHHHHHHhC
Confidence 68999999998 9999999998753
No 115
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.74 E-value=3.6e-17 Score=155.68 Aligned_cols=152 Identities=18% Similarity=0.193 Sum_probs=104.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|+.++|||||+++|....... . .. |+......+.+.+..++||||||+.+|...+..++.
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~--------~---~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 65 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVT--------T---IP----TIGFNVETVTYKNLKFQVWDLGGQTSIRPYWRCYYS 65 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcC--------c---CC----ccCcCeEEEEECCEEEEEEECCCCHHHHHHHHHHhc
Confidence 58999999999999999997542111 0 01 222223345667889999999999999988899999
Q ss_pred hcceEEEEeeCCCCchh-hHHHHHHHH-H---HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGPLA-QTKFVLAKA-L---KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~-qt~~~l~~~-~---~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++|+|+|+.+.... .....|... . ..+.|+++|+||+|+.+... ..+ +...+..... ....+++
T Consensus 66 ~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~--~~~----i~~~~~~~~~--~~~~~~~ 137 (158)
T cd04151 66 NTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALS--EAE----ISEKLGLSEL--KDRTWSI 137 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCCC--HHH----HHHHhCcccc--CCCcEEE
Confidence 99999999998874322 223333322 2 23789999999999965431 111 2111111111 1123579
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+++||++|. |++++++.|.+
T Consensus 138 ~~~Sa~~~~--------------gi~~l~~~l~~ 157 (158)
T cd04151 138 FKTSAIKGE--------------GLDEGMDWLVN 157 (158)
T ss_pred EEeeccCCC--------------CHHHHHHHHhc
Confidence 999999999 99999999864
No 116
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.74 E-value=6.4e-17 Score=153.49 Aligned_cols=164 Identities=21% Similarity=0.188 Sum_probs=130.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|..++|||||+.++++..+...+..++ |+.+.++...+.-..+.+++|||.|+++|...+..
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd~~YqATI----------GiDFlskt~~l~d~~vrLQlWDTAGQERFrslips 90 (221)
T KOG0094|consen 21 KKYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATI----------GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPS 90 (221)
T ss_pred eEEEEEEEccCccchHHHHHHHHHhhhccccccee----------eeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhh
Confidence 34799999999999999999999998776666655 77777777777667789999999999999999999
Q ss_pred HHhhcceEEEEeeCC-CCchhhHHHHHHHHHHcCC----CcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAG-EGPLAQTKFVLAKALKYGL----RPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~-~G~~~qt~~~l~~~~~~~l----p~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+..+|+|+|.+ ...+.+|..|+..++..+= -+++|.||.|+.+-+.... ++-....+++++
T Consensus 91 Y~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~----eEg~~kAkel~a------ 160 (221)
T KOG0094|consen 91 YIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSI----EEGERKAKELNA------ 160 (221)
T ss_pred hccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCceEEEEEcccccccchhhhhH----HHHHHHHHHhCc------
Confidence 999999999999954 5678899999998887633 3457889999954322111 111233344554
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA 257 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~ 257 (662)
-++.+||+.|. |+.+||..|...+|.+..
T Consensus 161 -~f~etsak~g~--------------NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 161 -EFIETSAKAGE--------------NVKQLFRRIAAALPGMEV 189 (221)
T ss_pred -EEEEecccCCC--------------CHHHHHHHHHHhccCccc
Confidence 28999999999 999999999999998754
No 117
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.74 E-value=6.4e-17 Score=153.42 Aligned_cols=155 Identities=19% Similarity=0.190 Sum_probs=105.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|.+|+|||||+++|+..........+..+ + ......+....+.+++|||||+.+|...+..++
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~----------~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~ 70 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIED----------S-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 70 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchh----------e-EEEEEEECCEEEEEEEEECCCCcchHHHHHHHH
Confidence 37999999999999999999976432222111111 1 111122222335688999999999999999999
Q ss_pred hhcceEEEEeeCCCCchhhHH-HHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPLAQTK-FVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+|++++|+|..+....+.. .++....+ .++|+++|+||+|+..... ..+++..+...++ +|
T Consensus 71 ~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~~-----~~~~~~~~~~~~~-------~~ 138 (162)
T cd04138 71 RTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTV-----SSRQGQDLAKSYG-------IP 138 (162)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccee-----cHHHHHHHHHHhC-------Ce
Confidence 999999999998764332322 33333333 3789999999999864211 1122233333322 46
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++|+.+.+.+
T Consensus 139 ~~~~Sa~~~~--------------gi~~l~~~l~~~~ 161 (162)
T cd04138 139 YIETSAKTRQ--------------GVEEAFYTLVREI 161 (162)
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHHh
Confidence 9999999998 9999999998654
No 118
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.74 E-value=5e-17 Score=155.12 Aligned_cols=156 Identities=17% Similarity=0.183 Sum_probs=105.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|++++|||||+++|+..........++ +.+.......+......++||||||+.+|.......++
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 71 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKYLPTI----------GIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYK 71 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc----------ceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhc
Confidence 79999999999999999999874322211111 22222222333334578999999999999988888999
Q ss_pred hcceEEEEeeCCCCchhhHH-HHHHHHHH--------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 142 MVEGAILVVDAGEGPLAQTK-FVLAKALK--------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~-~~l~~~~~--------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.+|++|+|+|..+....+.. .++..+.. .+.|+++|+||+|+....... .++...+....+
T Consensus 72 ~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------ 141 (168)
T cd04119 72 DTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVS----EDEGRLWAESKG------ 141 (168)
T ss_pred cCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccC----HHHHHHHHHHcC------
Confidence 99999999998875443333 33333332 357899999999985311111 111122222222
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|. |++++++.|.+.+
T Consensus 142 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~l 166 (168)
T cd04119 142 -FKYFETSACTGE--------------GVNEMFQTLFSSI 166 (168)
T ss_pred -CeEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 468999999998 9999999998754
No 119
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.74 E-value=4.3e-17 Score=156.43 Aligned_cols=158 Identities=21% Similarity=0.179 Sum_probs=108.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|..|+|||||+++|+..........+ -|++..............+.||||||+.+|.......+
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t----------~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVST----------VGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYY 71 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----------eeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHc
Confidence 48999999999999999999876432111111 12222222222222346899999999999999899999
Q ss_pred hhcceEEEEeeCCCCchhh-HHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
+.+|++++|+|..+....+ ...++..+... +.|+++|+||+|+....... .++..++...++ +|+
T Consensus 72 ~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~~~ 140 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVS----SERGRQLADQLG-------FEF 140 (165)
T ss_pred cCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcccccC----HHHHHHHHHHcC-------CEE
Confidence 9999999999987643332 33444455443 56899999999986533211 112222223332 469
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++||++|. |+++|++.+.+.++
T Consensus 141 ~~~Sa~~~~--------------gv~~l~~~l~~~~~ 163 (165)
T cd01865 141 FEASAKENI--------------NVKQVFERLVDIIC 163 (165)
T ss_pred EEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 999999999 99999999987654
No 120
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.73 E-value=6.7e-17 Score=153.94 Aligned_cols=156 Identities=19% Similarity=0.188 Sum_probs=104.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|.+|+|||||+++++..........+..+. ......+......+.||||||+.+|......++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~-----------~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDS-----------YRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhh-----------EEEEEEECCEEEEEEEEECCCccccchHHHHHh
Confidence 479999999999999999999764322221111111 111122222346788999999999998888899
Q ss_pred hhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+|++++|+|..+....+ ...++..+.. .++|+++|+||+|+....... .++...+...++ .|
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~~ 139 (163)
T cd04136 71 KNGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVS----REEGQALARQWG-------CP 139 (163)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceec----HHHHHHHHHHcC-------Ce
Confidence 9999999999987643322 2334444433 268999999999985422111 111222222222 57
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++++.|.+.+
T Consensus 140 ~~~~Sa~~~~--------------~v~~l~~~l~~~~ 162 (163)
T cd04136 140 FYETSAKSKI--------------NVDEVFADLVRQI 162 (163)
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHhc
Confidence 9999999998 9999999998754
No 121
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.73 E-value=7.4e-17 Score=157.29 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=108.1
Q ss_pred CCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc----
Q 006068 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA---- 130 (662)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~---- 130 (662)
++..+..+|+|+|++|+|||||+++|+...+... .....|.|....... ++ ..+++|||||+.
T Consensus 13 ~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~----------~~~~~~~t~~~~~~~--~~-~~~~liDtpG~~~~~~ 79 (179)
T TIGR03598 13 LPPDDGPEIAFAGRSNVGKSSLINALTNRKKLAR----------TSKTPGRTQLINFFE--VN-DGFRLVDLPGYGYAKV 79 (179)
T ss_pred CCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCccc----------ccCCCCcceEEEEEE--eC-CcEEEEeCCCCccccC
Confidence 3345678999999999999999999997632111 111234454443322 22 379999999963
Q ss_pred ------cchHHHHHHHh---hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHH
Q 006068 131 ------DFGGEVERVVG---MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (662)
Q Consensus 131 ------dF~~ev~~~l~---~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l 201 (662)
+|......+++ .+|++++|+|+..+...++..+++.+...++|+++++||+|+.. .....+..+++.+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~--~~~~~~~~~~i~~~ 157 (179)
T TIGR03598 80 SKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLK--KSELNKQLKKIKKA 157 (179)
T ss_pred ChhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC--HHHHHHHHHHHHHH
Confidence 24444445554 35899999999999999999888999889999999999999953 34445556666666
Q ss_pred HHhcCCCCcCCCccEEEcccccCc
Q 006068 202 FANLGATDEQLDFPVLYASAKEGW 225 (662)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~ 225 (662)
+...+. .++++++||++|+
T Consensus 158 l~~~~~-----~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 158 LKKDAD-----DPSVQLFSSLKKT 176 (179)
T ss_pred HhhccC-----CCceEEEECCCCC
Confidence 655432 2469999999998
No 122
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.73 E-value=5.5e-17 Score=155.52 Aligned_cols=156 Identities=22% Similarity=0.215 Sum_probs=107.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+++|..|+|||||+++|+....... ....++.......+..+ ...++||||||+.+|.....
T Consensus 2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~ 69 (166)
T cd01869 2 LFKLLLIGDSGVGKSCLLLRFADDTYTES------------YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITS 69 (166)
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCC------------CCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHH
Confidence 36899999999999999999986532211 11122222222333333 45789999999999999889
Q ss_pred HHHhhcceEEEEeeCCCCchhh-HHHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
..++.+|++|+|+|+.+..... ...++..... .++|++++.||+|+....... .++...+.... .
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~ 138 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVD----YSEAQEFADEL-------G 138 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccccCCC----HHHHHHHHHHc-------C
Confidence 9999999999999998743322 2334444443 368999999999985432211 11222222222 3
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||++|. |++++++.|.+.+
T Consensus 139 ~~~~~~Sa~~~~--------------~v~~~~~~i~~~~ 163 (166)
T cd01869 139 IPFLETSAKNAT--------------NVEQAFMTMAREI 163 (166)
T ss_pred CeEEEEECCCCc--------------CHHHHHHHHHHHH
Confidence 579999999998 9999999998754
No 123
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=6e-17 Score=189.64 Aligned_cols=157 Identities=23% Similarity=0.357 Sum_probs=126.0
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------ 131 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d------ 131 (662)
...++|+|+|++|+|||||+++|++.. ....+...|+|.+.......|++..+++|||||+..
T Consensus 273 ~~~~~V~IvG~~nvGKSSL~n~l~~~~-----------~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~~~~~ 341 (712)
T PRK09518 273 KAVGVVAIVGRPNVGKSTLVNRILGRR-----------EAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADVEGID 341 (712)
T ss_pred ccCcEEEEECCCCCCHHHHHHHHhCCC-----------ceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCCccHH
Confidence 446899999999999999999999652 122334568898888888899999999999999763
Q ss_pred --chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 132 --FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 132 --F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
|...+..++..+|++|+|+|+.+++......++..++..+.|+|+|+||+|+..... . ..+ +..++...
T Consensus 342 ~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~~-----~---~~~-~~~lg~~~ 412 (712)
T PRK09518 342 SAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASEY-----D---AAE-FWKLGLGE 412 (712)
T ss_pred HHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccchh-----h---HHH-HHHcCCCC
Confidence 455667788999999999999999998888888999999999999999999853211 1 111 22334332
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++||++|. |+++|++.|++.+|.
T Consensus 413 ------~~~iSA~~g~--------------GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 ------PYPISAMHGR--------------GVGDLLDEALDSLKV 437 (712)
T ss_pred ------eEEEECCCCC--------------CchHHHHHHHHhccc
Confidence 5789999999 999999999998875
No 124
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.73 E-value=4.9e-17 Score=156.12 Aligned_cols=158 Identities=17% Similarity=0.160 Sum_probs=108.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|+.|+|||||+++|+.......... .-|.++......+.....+++||||||+..|.......
T Consensus 2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~----------t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 71 (166)
T cd04122 2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPH----------TIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSY 71 (166)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCc----------ccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHH
Confidence 35899999999999999999987633211111 11222222223333334678999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++.+|++|+|+|..+....+.. .++..... .+.|+++|.||+|+....... .++...+.... .++
T Consensus 72 ~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~~~ 140 (166)
T cd04122 72 YRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVT----YEEAKQFADEN-------GLL 140 (166)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCcC----HHHHHHHHHHc-------CCE
Confidence 9999999999999875443333 34444433 256889999999986532211 12223333322 257
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++|+.+.+.+
T Consensus 141 ~~e~Sa~~~~--------------~i~e~f~~l~~~~ 163 (166)
T cd04122 141 FLECSAKTGE--------------NVEDAFLETAKKI 163 (166)
T ss_pred EEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 9999999999 9999998887643
No 125
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.73 E-value=5.6e-17 Score=152.84 Aligned_cols=146 Identities=23% Similarity=0.261 Sum_probs=108.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH------
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE------ 135 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e------ 135 (662)
+|+++|++|+|||||+++|+..... ......++|.......+.+.+.++++|||||+.++...
T Consensus 3 ~i~l~G~~~~GKstli~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~ 71 (157)
T cd04164 3 KVVIVGKPNVGKSSLLNALAGRDRA-----------IVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGI 71 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHCCceE-----------eccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcchHHHHHH
Confidence 7999999999999999999876321 11123466666666677778889999999999887532
Q ss_pred --HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 136 --VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 136 --v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+...+..+|++++|+|+...........+.. ..+.|+++|+||+|+...... . .....
T Consensus 72 ~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~-----------~-------~~~~~ 131 (157)
T cd04164 72 ERAREAIEEADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL-----------L-------SLLAG 131 (157)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc-----------c-------cccCC
Confidence 3356778999999999997665555555444 568999999999998643221 0 01123
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.|++++||+++. |+++|+++|.+++
T Consensus 132 ~~~~~~Sa~~~~--------------~v~~l~~~l~~~~ 156 (157)
T cd04164 132 KPIIAISAKTGE--------------GLDELKEALLELA 156 (157)
T ss_pred CceEEEECCCCC--------------CHHHHHHHHHHhh
Confidence 579999999998 9999999987654
No 126
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=5.7e-17 Score=155.66 Aligned_cols=157 Identities=21% Similarity=0.186 Sum_probs=107.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev 136 (662)
..++|+++|+.|+|||||+++|+...... .....++.......+.+.+ ..+.+|||||+.+|....
T Consensus 6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~ 73 (169)
T cd04114 6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPP------------GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSIT 73 (169)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhCCCCC------------CCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 46899999999999999999998652111 1112222233334455555 568889999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHHH-HHHHHH---HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTKF-VLAKAL---KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~---~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+++.+|++++|+|+.++...+... ++..+. ..++|.++|+||+|+...+. +..+....+....
T Consensus 74 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~-----i~~~~~~~~~~~~------ 142 (169)
T cd04114 74 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERRE-----VSQQRAEEFSDAQ------ 142 (169)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccc-----cCHHHHHHHHHHc------
Confidence 99999999999999998765443333 333222 24688999999999854221 1111111222211
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
..+++++||++|. |++++++.|.+++
T Consensus 143 ~~~~~~~Sa~~~~--------------gv~~l~~~i~~~~ 168 (169)
T cd04114 143 DMYYLETSAKESD--------------NVEKLFLDLACRL 168 (169)
T ss_pred CCeEEEeeCCCCC--------------CHHHHHHHHHHHh
Confidence 2468999999998 9999999998653
No 127
>PTZ00369 Ras-like protein; Provisional
Probab=99.73 E-value=7.3e-17 Score=158.76 Aligned_cols=158 Identities=17% Similarity=0.163 Sum_probs=108.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+|+|+.|+|||||+++++..........++ +.+. .....+....+.++||||||+.+|...+..+
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~ 73 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI----------EDSY-RKQCVIDEETCLLDILDTAGQEEYSAMRDQY 73 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCch----------hhEE-EEEEEECCEEEEEEEEeCCCCccchhhHHHH
Confidence 3689999999999999999999764332221111 1111 1222333445679999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
++.+|++|+|+|+.+....+ ...++....+ .++|+++|+||+|+.+....... +...+...+ .+
T Consensus 74 ~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~i~~~----~~~~~~~~~-------~~ 142 (189)
T PTZ00369 74 MRTGQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSERQVSTG----EGQELAKSF-------GI 142 (189)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccCHH----HHHHHHHHh-------CC
Confidence 99999999999988754422 2333333333 27799999999998543221111 111222222 25
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
|++++||++|. |++++|++|++.+.
T Consensus 143 ~~~e~Sak~~~--------------gi~~~~~~l~~~l~ 167 (189)
T PTZ00369 143 PFLETSAKQRV--------------NVDEAFYELVREIR 167 (189)
T ss_pred EEEEeeCCCCC--------------CHHHHHHHHHHHHH
Confidence 79999999998 99999999987764
No 128
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.73 E-value=9.5e-17 Score=154.04 Aligned_cols=155 Identities=17% Similarity=0.128 Sum_probs=106.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|..|+|||||+++++..........+. + ........+..+...+++|||||+.+|......++
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~----------~-~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI----------E-DTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSI 70 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcc----------h-heEEEEEEECCEEEEEEEEECCCCCcchHHHHHHh
Confidence 479999999999999999999764322211111 1 11122233344557899999999999998888889
Q ss_pred hhcceEEEEeeCCCCchhh-HHHHHHHHHH------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+.+|++|+|+|..+....+ ...++..+.+ .++|+++|+||+|+....... .++...+.... .
T Consensus 71 ~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~-------~ 139 (165)
T cd04140 71 SKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVS----SNEGAACATEW-------N 139 (165)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeec----HHHHHHHHHHh-------C
Confidence 9999999999988765443 3445554444 368999999999985422211 11111222222 2
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
++++++||++|. |++++|+.|.+.
T Consensus 140 ~~~~e~SA~~g~--------------~v~~~f~~l~~~ 163 (165)
T cd04140 140 CAFMETSAKTNH--------------NVQELFQELLNL 163 (165)
T ss_pred CcEEEeecCCCC--------------CHHHHHHHHHhc
Confidence 468999999999 999999998753
No 129
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.73 E-value=6.7e-17 Score=160.57 Aligned_cols=158 Identities=22% Similarity=0.235 Sum_probs=108.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE-ecCeeEEEEeCCCCccchHHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-WRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~-~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
+|+++|.+|+|||||+++|+..........+ .|.........+. .....++||||||+..|......++
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~~~~t----------~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~ 71 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQHYKAT----------IGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYY 71 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCCc----------eeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHh
Confidence 7999999999999999999976322211111 1222222222222 3357899999999999998889999
Q ss_pred hhcceEEEEeeCCCCchhhHHHHH-HHHHH-------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 141 GMVEGAILVVDAGEGPLAQTKFVL-AKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~~~l-~~~~~-------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
+.+|++|+|+|..+....+....| ..+.. .++|+|+|+||+|+...... ..+++.++....+.
T Consensus 72 ~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~~~~~~~~~~----- 142 (201)
T cd04107 72 RGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAK----DGEQMDQFCKENGF----- 142 (201)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccccccc----CHHHHHHHHHHcCC-----
Confidence 999999999998875444433323 33321 46799999999999531111 12233444444442
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.+++++||++|. |++++|++|.+.+.
T Consensus 143 -~~~~e~Sak~~~--------------~v~e~f~~l~~~l~ 168 (201)
T cd04107 143 -IGWFETSAKEGI--------------NIEEAMRFLVKNIL 168 (201)
T ss_pred -ceEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 358999999998 99999999987764
No 130
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.73 E-value=9.2e-17 Score=154.70 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=110.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+|+|++|+|||||+++++......... ...|.+.......+......++||||||+..|......+
T Consensus 4 ~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 73 (168)
T cd01866 4 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----------LTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSY 73 (168)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCC----------CccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHH
Confidence 4689999999999999999998763221111 112444444444444445689999999999998888899
Q ss_pred HhhcceEEEEeeCCCCchhhHHH-HHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPLAQTKF-VLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++.+|++|+|+|+.+....+... ++..+.. .+.|+++|+||+|+....... .++...+....+ ++
T Consensus 74 ~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~~ 142 (168)
T cd01866 74 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVS----YEEGEAFAKEHG-------LI 142 (168)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccCCC----HHHHHHHHHHcC-------CE
Confidence 99999999999998755444443 3333433 368899999999986322111 122233333332 46
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++|+.+.+.+
T Consensus 143 ~~e~Sa~~~~--------------~i~~~~~~~~~~~ 165 (168)
T cd01866 143 FMETSAKTAS--------------NVEEAFINTAKEI 165 (168)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 8999999998 9999999888764
No 131
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.72 E-value=1.1e-16 Score=153.00 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=105.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|.+|+|||||+++++..........++.+ +. .....+....+.++||||||+..|......++
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~----------~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIED----------SY-RKQVEVDGQQCMLEILDTAGTEQFTAMRDLYM 70 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchh----------eE-EEEEEECCEEEEEEEEECCCcccchhHHHHHH
Confidence 37999999999999999999865322211111111 11 11222222346788999999999999999999
Q ss_pred hhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+|++++|+|..+....+ ...++..... .++|+++|+||+|+........ ++...+...+ .+|
T Consensus 71 ~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~-------~~~ 139 (164)
T cd04175 71 KNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGK----EQGQNLARQW-------GCA 139 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccEEcH----HHHHHHHHHh-------CCE
Confidence 9999999999987654333 2334444432 3689999999999854221111 1112222222 257
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++|++|.+.+
T Consensus 140 ~~~~Sa~~~~--------------~v~~~~~~l~~~l 162 (164)
T cd04175 140 FLETSAKAKI--------------NVNEIFYDLVRQI 162 (164)
T ss_pred EEEeeCCCCC--------------CHHHHHHHHHHHh
Confidence 9999999998 9999999998754
No 132
>PRK00089 era GTPase Era; Reviewed
Probab=99.72 E-value=1.3e-16 Score=167.97 Aligned_cols=160 Identities=25% Similarity=0.238 Sum_probs=113.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc-------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF------- 132 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF------- 132 (662)
...|+|+|++|+|||||+|+|++.... ......+.|..........++.++.+|||||+.+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~-----------~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~~l~~~ 73 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKIS-----------IVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRA 73 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCcee-----------ecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchhHHHHH
Confidence 457999999999999999999976321 11111222322222223335679999999997653
Q ss_pred -hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 133 -GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 133 -~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+..++..+|++++|+|+.++.......++..+...+.|+++|+||+|+.. +.....+..+.+.+ ..+
T Consensus 74 ~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~-~~~~l~~~~~~l~~---~~~----- 144 (292)
T PRK00089 74 MNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVK-DKEELLPLLEELSE---LMD----- 144 (292)
T ss_pred HHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCC-CHHHHHHHHHHHHh---hCC-----
Confidence 33455678899999999999987777777777777777899999999999953 22222222222222 122
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
..+++++||++|. |+++|++.|.+++|.
T Consensus 145 -~~~i~~iSA~~~~--------------gv~~L~~~L~~~l~~ 172 (292)
T PRK00089 145 -FAEIVPISALKGD--------------NVDELLDVIAKYLPE 172 (292)
T ss_pred -CCeEEEecCCCCC--------------CHHHHHHHHHHhCCC
Confidence 2458999999998 999999999999874
No 133
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.72 E-value=1.1e-16 Score=153.08 Aligned_cols=156 Identities=17% Similarity=0.162 Sum_probs=107.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+++|.+++|||||+++|+....... ..+.++.......+..++ ..+++|||||+..|.....
T Consensus 3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~ 70 (165)
T cd01868 3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLD------------SKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITS 70 (165)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCCC------------CCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHH
Confidence 35899999999999999999987632211 112222222233333433 5789999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
..++.+|++|+|+|+.+....+. ..++..+.+. ++|+++|+||+|+....... .++...+.... .
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~ 139 (165)
T cd01868 71 AYYRGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVP----TEEAKAFAEKN-------G 139 (165)
T ss_pred HHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccccCC----HHHHHHHHHHc-------C
Confidence 89999999999999886444333 2344444432 58899999999986432211 12222332222 2
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|. |++.+++.|.+.+
T Consensus 140 ~~~~~~Sa~~~~--------------~v~~l~~~l~~~i 164 (165)
T cd01868 140 LSFIETSALDGT--------------NVEEAFKQLLTEI 164 (165)
T ss_pred CEEEEEECCCCC--------------CHHHHHHHHHHHh
Confidence 579999999998 9999999998765
No 134
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.72 E-value=6.1e-17 Score=153.77 Aligned_cols=152 Identities=20% Similarity=0.204 Sum_probs=107.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|+.|+|||||+++++..... . ...|+......+.+++..+++|||||+..|.......+.
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~--------------~~~t~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 65 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-T--------------TIPTIGFNVETVEYKNVSFTVWDVGGQDKIRPLWKHYYE 65 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-C--------------CCCCcCcceEEEEECCEEEEEEECCCChhhHHHHHHHhc
Confidence 5899999999999999999976311 0 111222333456677899999999999999888889999
Q ss_pred hcceEEEEeeCCCCc-hhhHHHHHHHHH----HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGP-LAQTKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~-~~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++++|+|+..+. ......++.... ..+.|+++|+||+|+..... ..++.+ .+.... .....+|+
T Consensus 66 ~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~--~~~~~~----~~~~~~--~~~~~~~~ 137 (158)
T cd00878 66 NTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALS--VSELIE----KLGLEK--ILGRRWHI 137 (158)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCccccC--HHHHHH----hhChhh--ccCCcEEE
Confidence 999999999998762 333344444333 34789999999999865331 122222 111110 01124689
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+++||++|. |++++++.|..
T Consensus 138 ~~~Sa~~~~--------------gv~~~~~~l~~ 157 (158)
T cd00878 138 QPCSAVTGD--------------GLDEGLDWLLQ 157 (158)
T ss_pred EEeeCCCCC--------------CHHHHHHHHhh
Confidence 999999998 99999999865
No 135
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.72 E-value=7.8e-17 Score=157.77 Aligned_cols=161 Identities=19% Similarity=0.176 Sum_probs=105.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEE-EecCeeEEEEeCCCCccchHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI-SWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~-~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
.+|+++|+.|+|||||+++++....... ....|.+........ .+.+..+++|||||+..|...+..+
T Consensus 4 ~kv~~vG~~~~GKTsli~~~~~~~~~~~-----------~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 72 (183)
T cd04152 4 LHIVMLGLDSAGKTTVLYRLKFNEFVNT-----------VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSY 72 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCcCCc-----------CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHH
Confidence 4799999999999999999987532211 011122222211111 3356889999999999998888888
Q ss_pred HhhcceEEEEeeCCCCchhhH-HHHH----HHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPLAQT-KFVL----AKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt-~~~l----~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
++.+|++|+|+|+.+....+. ..++ ......++|+++|+||+|+...... .+ +..++..... .....+
T Consensus 73 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~~~--~~----~~~~~~~~~~-~~~~~~ 145 (183)
T cd04152 73 TRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSV--SE----VEKLLALHEL-SASTPW 145 (183)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccccCCH--HH----HHHHhCcccc-CCCCce
Confidence 999999999999987532222 2222 2233457899999999998542110 11 1111110001 011135
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++++||++|. |++++++.|.+.+-
T Consensus 146 ~~~~~SA~~~~--------------gi~~l~~~l~~~l~ 170 (183)
T cd04152 146 HVQPACAIIGE--------------GLQEGLEKLYEMIL 170 (183)
T ss_pred EEEEeecccCC--------------CHHHHHHHHHHHHH
Confidence 78999999999 99999999987663
No 136
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.72 E-value=7.2e-17 Score=158.44 Aligned_cols=158 Identities=18% Similarity=0.177 Sum_probs=108.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|+.|+|||||+++|...... . ...|+......+.+.+..+++|||||+.+|...+..+
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~--------------~~~T~~~~~~~i~~~~~~~~l~D~~G~~~~~~~~~~~ 83 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-Q--------------HVPTLHPTSEELTIGNIKFKTFDLGGHEQARRLWKDY 83 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-c--------------cCCccCcceEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 568999999999999999999864211 0 0112222334566778899999999999998888889
Q ss_pred HhhcceEEEEeeCCCCc-hhhHHHHHHHHH----HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC-------
Q 006068 140 VGMVEGAILVVDAGEGP-LAQTKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA------- 207 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~------- 207 (662)
++.+|++++|+|+.+.. .......+.... ..+.|+++|+||+|+..... .+++.+++.....
T Consensus 84 ~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~ 157 (190)
T cd00879 84 FPEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVS------EEELRQALGLYGTTTGKGVS 157 (190)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCCcC------HHHHHHHhCccccccccccc
Confidence 99999999999987642 222333443333 24689999999999864221 1222233221110
Q ss_pred --CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 208 --TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 208 --~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
......++++++||++|. |++++|++|.+++
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~--------------gv~e~~~~l~~~~ 190 (190)
T cd00879 158 LKVSGIRPIEVFMCSVVKRQ--------------GYGEAFRWLSQYL 190 (190)
T ss_pred ccccCceeEEEEEeEecCCC--------------ChHHHHHHHHhhC
Confidence 011123578999999999 9999999998754
No 137
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.72 E-value=1.1e-16 Score=159.20 Aligned_cols=155 Identities=21% Similarity=0.233 Sum_probs=107.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~~~ 139 (662)
.|+++|..|+|||||+.++....+..... ..+++......+.+++ ..++||||+|+..|...+..+
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~~~~~------------~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y 69 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFCEACK------------SGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAY 69 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCCCcCC------------CcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHH
Confidence 58999999999999999998764322211 1222222233344444 788999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhhHHHH-HHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPLAQTKFV-LAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~~~-l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++.+|++|+|+|.++....+.... +..+.. .++|+|+|.||+|+...+... .++..++...+. .++
T Consensus 70 ~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~~~v~----~~~~~~~a~~~~------~~~ 139 (202)
T cd04120 70 YRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIS----RQQGEKFAQQIT------GMR 139 (202)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC----HHHHHHHHHhcC------CCE
Confidence 999999999999988655554443 333333 257899999999985422111 112222222221 246
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++|+++.+.+
T Consensus 140 ~~etSAktg~--------------gV~e~F~~l~~~~ 162 (202)
T cd04120 140 FCEASAKDNF--------------NVDEIFLKLVDDI 162 (202)
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 8999999999 9999998887655
No 138
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.72 E-value=6.3e-17 Score=189.47 Aligned_cols=163 Identities=22% Similarity=0.252 Sum_probs=122.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d------- 131 (662)
..++|+|+|++|+|||||+++|++.. ........|+|.+.....+.+++..++||||||+.+
T Consensus 449 ~~~kI~ivG~~nvGKSSLin~l~~~~-----------~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~ 517 (712)
T PRK09518 449 GLRRVALVGRPNVGKSSLLNQLTHEE-----------RAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTG 517 (712)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcc-----------ccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchh
Confidence 46799999999999999999999762 112233567888777777888999999999999642
Q ss_pred --chHH--HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006068 132 --FGGE--VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (662)
Q Consensus 132 --F~~e--v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~ 207 (662)
|... ...+++.+|++|+|+|+.++...++..++..+...++|+|+|+||+|+.+. .......+.+...+....
T Consensus 518 ~e~~~~~r~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~--~~~~~~~~~~~~~l~~~~- 594 (712)
T PRK09518 518 AEYYSSLRTQAAIERSELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE--FRRQRLERLWKTEFDRVT- 594 (712)
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh--hHHHHHHHHHHHhccCCC-
Confidence 2111 235578899999999999999999999999998899999999999999542 221222222322221111
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
..|++++||++|. |+++|++.+.+.++.
T Consensus 595 -----~~~ii~iSAktg~--------------gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 595 -----WARRVNLSAKTGW--------------HTNRLAPAMQEALES 622 (712)
T ss_pred -----CCCEEEEECCCCC--------------CHHHHHHHHHHHHHH
Confidence 2578999999999 899999998876653
No 139
>PRK04213 GTP-binding protein; Provisional
Probab=99.72 E-value=1.6e-16 Score=157.61 Aligned_cols=160 Identities=24% Similarity=0.352 Sum_probs=106.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d------- 131 (662)
...+|+++|++|+|||||+++|.+.. ...+..+|+|..... +.+. .+++|||||+.+
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~~------------~~~~~~~~~t~~~~~--~~~~--~~~l~Dt~G~~~~~~~~~~ 71 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGKK------------VRVGKRPGVTRKPNH--YDWG--DFILTDLPGFGFMSGVPKE 71 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------CccCCCCceeeCceE--Eeec--ceEEEeCCccccccccCHH
Confidence 45689999999999999999998642 122334577765443 3333 699999999533
Q ss_pred ----chHHHHH----HHhhcceEEEEeeCCCC-----------chhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHH
Q 006068 132 ----FGGEVER----VVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCD 192 (662)
Q Consensus 132 ----F~~ev~~----~l~~aD~aIlVVDa~~G-----------~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ 192 (662)
|...+.. .+..+|++++|+|+... ...++.+++..+...++|+++|+||+|+.+...
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~~---- 147 (201)
T PRK04213 72 VQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNRD---- 147 (201)
T ss_pred HHHHHHHHHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcHH----
Confidence 3222222 33456899999998642 234566778888788999999999999854331
Q ss_pred HHHHHHHHHHHhcCCCC--cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 193 EVESLVFDLFANLGATD--EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 193 ei~~~v~~l~~~~g~~~--~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
+..+++.+ .++... .....+++++||++| |++++++.|.+.++.-.
T Consensus 148 ~~~~~~~~---~~~~~~~~~~~~~~~~~~SA~~g---------------gi~~l~~~l~~~~~~~~ 195 (201)
T PRK04213 148 EVLDEIAE---RLGLYPPWRQWQDIIAPISAKKG---------------GIEELKEAIRKRLHEAK 195 (201)
T ss_pred HHHHHHHH---HhcCCccccccCCcEEEEecccC---------------CHHHHHHHHHHhhcCcc
Confidence 12222222 233211 111246899999998 68899999999886543
No 140
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.72 E-value=2.3e-16 Score=155.48 Aligned_cols=167 Identities=18% Similarity=0.222 Sum_probs=115.5
Q ss_pred CCCCCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc
Q 006068 51 PNSTLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (662)
Q Consensus 51 ~~~~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~ 130 (662)
.++.+.....++|+|+|++|+|||||+++|+...... ......|.|....... + +.+++||||||+.
T Consensus 15 ~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~----------~~~~~~~~t~~~~~~~--~-~~~l~l~DtpG~~ 81 (196)
T PRK00454 15 KLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLA----------RTSKTPGRTQLINFFE--V-NDKLRLVDLPGYG 81 (196)
T ss_pred cHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcc----------cccCCCCceeEEEEEe--c-CCeEEEeCCCCCC
Confidence 3555556678999999999999999999999753211 1112234454433322 2 4789999999963
Q ss_pred ----------cchHHHHHHHhhc---ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHH
Q 006068 131 ----------DFGGEVERVVGMV---EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESL 197 (662)
Q Consensus 131 ----------dF~~ev~~~l~~a---D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~ 197 (662)
.|......+++.+ +++++|+|+..+.......++..+...++|+++++||+|+... .......++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~--~~~~~~~~~ 159 (196)
T PRK00454 82 YAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK--GERKKQLKK 159 (196)
T ss_pred CcCCCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH--HHHHHHHHH
Confidence 2333444455544 6788899988877776666777777889999999999998532 222333444
Q ss_pred HHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 198 VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 198 v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+...+... ..+++++||++|. |++++++.|.+.+.
T Consensus 160 i~~~l~~~-------~~~~~~~Sa~~~~--------------gi~~l~~~i~~~~~ 194 (196)
T PRK00454 160 VRKALKFG-------DDEVILFSSLKKQ--------------GIDELRAAIAKWLA 194 (196)
T ss_pred HHHHHHhc-------CCceEEEEcCCCC--------------CHHHHHHHHHHHhc
Confidence 44444322 2468999999998 99999999987663
No 141
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.72 E-value=1.3e-16 Score=153.98 Aligned_cols=157 Identities=17% Similarity=0.162 Sum_probs=107.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..++|||||+++|....... ...|+......+.+++..+++|||||+.+|...+..+++
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~~---------------~~~T~~~~~~~~~~~~~~i~l~Dt~G~~~~~~~~~~~~~ 65 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQ---------------PIPTIGFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYL 65 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCCC---------------cCCcCceeEEEEEECCEEEEEEECCCChhcchHHHHHhc
Confidence 48999999999999999998752110 011222223346678899999999999999988889999
Q ss_pred hcceEEEEeeCCCCc-hhhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++++|+|+.+.. ......++..... .+.|+++|+||+|+..... .+++..++...... ....+++
T Consensus 66 ~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~~~~~~~~~-~~~~~~~ 138 (169)
T cd04158 66 NTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALS------VEEMTELLSLHKLC-CGRSWYI 138 (169)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccCCC------HHHHHHHhCCcccc-CCCcEEE
Confidence 999999999987642 2233344444432 2478999999999854211 11122222111110 0112468
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+++||++|. |++++|++|.+.++.
T Consensus 139 ~~~Sa~~g~--------------gv~~~f~~l~~~~~~ 162 (169)
T cd04158 139 QGCDARSGM--------------GLYEGLDWLSRQLVA 162 (169)
T ss_pred EeCcCCCCC--------------CHHHHHHHHHHHHhh
Confidence 899999999 999999999987754
No 142
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.72 E-value=1e-16 Score=152.59 Aligned_cols=154 Identities=18% Similarity=0.187 Sum_probs=106.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|++++|||||+++|+....... .....+.+.......+......+++|||||+..|.......++
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 71 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPD----------LAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYR 71 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc----------cCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhC
Confidence 799999999999999999987632111 1122233333333333334468999999999999888888999
Q ss_pred hcceEEEEeeCCCCchhhHHH-HHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGPLAQTKF-VLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~~-~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++|+|+|+.+....+... ++..+.. .+.|+++|+||+|+...... .++...+.... .+|+
T Consensus 72 ~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~~~-----~~~~~~~~~~~-------~~~~ 139 (161)
T cd01863 72 GAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVT-----REEGLKFARKH-------NMLF 139 (161)
T ss_pred CCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccccccC-----HHHHHHHHHHc-------CCEE
Confidence 999999999988755444333 3333332 46889999999999632211 11222232222 3679
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
+++||++|. |++++++.+.+.
T Consensus 140 ~~~Sa~~~~--------------gi~~~~~~~~~~ 160 (161)
T cd01863 140 IETSAKTRD--------------GVQQAFEELVEK 160 (161)
T ss_pred EEEecCCCC--------------CHHHHHHHHHHh
Confidence 999999998 999999998765
No 143
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.72 E-value=1.6e-16 Score=152.89 Aligned_cols=157 Identities=18% Similarity=0.170 Sum_probs=106.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|.+++|||||+++|+......... ...|.........+..+...++||||||+..|......+
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 74 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQLF----------HTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPF 74 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCcC----------CceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHH
Confidence 5689999999999999999998653221110 111222222222233334678899999999999989999
Q ss_pred HhhcceEEEEeeCCCCchhhHHH-HHHHHHH-------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 140 VGMVEGAILVVDAGEGPLAQTKF-VLAKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~-------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
++.+|++|+|+|..+....+... +...... .++|+++|+||+|+..... ..+++.++...++.
T Consensus 75 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~~---- 145 (170)
T cd04116 75 YRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQV-----STEEAQAWCRENGD---- 145 (170)
T ss_pred hcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccccccc-----CHHHHHHHHHHCCC----
Confidence 99999999999988765433333 2222222 3579999999999852111 12233334444332
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
++++++||++|. |+.++|+.+++.
T Consensus 146 --~~~~e~Sa~~~~--------------~v~~~~~~~~~~ 169 (170)
T cd04116 146 --YPYFETSAKDAT--------------NVAAAFEEAVRR 169 (170)
T ss_pred --CeEEEEECCCCC--------------CHHHHHHHHHhh
Confidence 368999999998 999999998865
No 144
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.72 E-value=9.5e-17 Score=154.56 Aligned_cols=156 Identities=17% Similarity=0.134 Sum_probs=106.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|..|+|||||+++++......... ..-++.+.........+...+.+|||||+.+|.......+
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYV----------ATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYY 70 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCC----------CceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHh
Confidence 379999999999999999999653211111 1112222222222233457899999999999988778889
Q ss_pred hhcceEEEEeeCCCCchhhHHH-HHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 141 GMVEGAILVVDAGEGPLAQTKF-VLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
+.+|++|+|+|..++...+... ++..+... ++|+++|+||+|+..... ..+..++... ..++++
T Consensus 71 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~~~~------~~~~~~~~~~-------~~~~~~ 137 (166)
T cd00877 71 IGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKV------KAKQITFHRK-------KNLQYY 137 (166)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhcccccC------CHHHHHHHHH-------cCCEEE
Confidence 9999999999998765544433 33444333 699999999999863221 1111122221 125699
Q ss_pred EcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++||++|. |++++++.|.+.+.
T Consensus 138 e~Sa~~~~--------------~v~~~f~~l~~~~~ 159 (166)
T cd00877 138 EISAKSNY--------------NFEKPFLWLARKLL 159 (166)
T ss_pred EEeCCCCC--------------ChHHHHHHHHHHHH
Confidence 99999998 99999999987763
No 145
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.71 E-value=1.1e-16 Score=153.92 Aligned_cols=155 Identities=19% Similarity=0.200 Sum_probs=104.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~~~ 139 (662)
+|+++|++|+|||||+++|+..........+ .+.+... ..+.+. ...+++|||||+.+|.......
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t----------~~~~~~~--~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 69 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQYKAT----------IGADFLT--KEVTVDDKLVTLQIWDTAGQERFQSLGVAF 69 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcCCc----------cceEEEE--EEEEECCEEEEEEEEeCCChHHHHhHHHHH
Confidence 7999999999999999999876322111111 1222211 223333 3567899999999999888899
Q ss_pred HhhcceEEEEeeCCCCchhhHHHHH-HHHHH-------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 140 VGMVEGAILVVDAGEGPLAQTKFVL-AKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~~~l-~~~~~-------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
++.+|++|+|+|+.+....+....| ..... .++|+++|+||+|+...+.. ..+++..++...+
T Consensus 70 ~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~~~----- 140 (172)
T cd01862 70 YRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQV----STKKAQQWCQSNG----- 140 (172)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccccccc----CHHHHHHHHHHcC-----
Confidence 9999999999999876543333222 22111 27899999999999632211 1122333333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++++++||++|. |++++++.|.+.+
T Consensus 141 -~~~~~~~Sa~~~~--------------gv~~l~~~i~~~~ 166 (172)
T cd01862 141 -NIPYFETSAKEAI--------------NVEQAFETIARKA 166 (172)
T ss_pred -CceEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 2569999999998 9999999988654
No 146
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.71 E-value=1.6e-16 Score=153.26 Aligned_cols=159 Identities=17% Similarity=0.162 Sum_probs=106.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchH-HH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGG-EV 136 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~-ev 136 (662)
..+|+++|++|+|||||+++++..... .+....+........+.++ .+.++||||||+.+|.. ..
T Consensus 2 ~~ki~vvG~~~vGKTsli~~~~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 69 (170)
T cd04115 2 IFKIIVIGDSNVGKTCLTYRFCAGRFP------------ERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMV 69 (170)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCC------------CccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhH
Confidence 468999999999999999999865221 1112222222223333444 47899999999999874 56
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHHHHH-HHHHHc----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTKFVL-AKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~~~l-~~~~~~----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+++.+|++++|+|+.+....+....| ..+... ++|+++|+||+|+....... .++...+....
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~~----~~~~~~~~~~~------ 139 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVP----TDLAQRFADAH------ 139 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhhcCCC----HHHHHHHHHHc------
Confidence 7788999999999999887665555444 344443 58999999999985432111 11112222221
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++++++||+++.. ..+++++|..+++.+
T Consensus 140 -~~~~~e~Sa~~~~~-----------~~~i~~~f~~l~~~~ 168 (170)
T cd04115 140 -SMPLFETSAKDPSE-----------NDHVEAIFMTLAHKL 168 (170)
T ss_pred -CCcEEEEeccCCcC-----------CCCHHHHHHHHHHHh
Confidence 25799999999431 118999999887654
No 147
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.71 E-value=1.9e-16 Score=152.21 Aligned_cols=158 Identities=17% Similarity=0.111 Sum_probs=106.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|+.|+|||||+++|+..........+ ....++. ..+...+..++||||||+.++...+...+.
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~---------~~~~~~~---~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 69 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPENVPRV---------LPEITIP---ADVTPERVPTTIVDTSSRPQDRANLAAEIR 69 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCccCCCc---------ccceEee---eeecCCeEEEEEEeCCCchhhhHHHhhhcc
Confidence 7999999999999999999986432211110 0011211 122235678999999999988888888889
Q ss_pred hcceEEEEeeCCCCchhhHH--HHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 142 MVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
.+|++++|+|+.+....+.. .|...+.. .++|+++|+||+|+.+..... ...+++..+...+.. ..+++
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~ 142 (166)
T cd01893 70 KANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQA--GLEEEMLPIMNEFRE-----IETCV 142 (166)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchh--HHHHHHHHHHHHHhc-----ccEEE
Confidence 99999999999876655553 23344443 368999999999996543211 111222222222211 02689
Q ss_pred EcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++||++|. |++++++.+.+.+
T Consensus 143 e~Sa~~~~--------------~v~~lf~~~~~~~ 163 (166)
T cd01893 143 ECSAKTLI--------------NVSEVFYYAQKAV 163 (166)
T ss_pred Eecccccc--------------CHHHHHHHHHHHh
Confidence 99999998 9999999987765
No 148
>PLN03118 Rab family protein; Provisional
Probab=99.71 E-value=1.9e-16 Score=158.58 Aligned_cols=158 Identities=20% Similarity=0.180 Sum_probs=108.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+|+|+.|+|||||+++|+..... ......|.+.......+....+.++||||||+.+|......+
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-----------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~ 82 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE-----------DLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSY 82 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-----------CcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHH
Confidence 468999999999999999999876311 111112333322222232234688999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhhHH-HHHHH-HHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 140 VGMVEGAILVVDAGEGPLAQTK-FVLAK-ALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~-~~l~~-~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
++.+|++|+|+|+.+....+.. ..|.. ... .+.|+++|+||+|+....... .++...+.... .
T Consensus 83 ~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i~----~~~~~~~~~~~-------~ 151 (211)
T PLN03118 83 YRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDVS----REEGMALAKEH-------G 151 (211)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC----HHHHHHHHHHc-------C
Confidence 9999999999999876544443 23433 222 357889999999986432211 11222222222 2
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++++.|.+.+.
T Consensus 152 ~~~~e~SAk~~~--------------~v~~l~~~l~~~~~ 177 (211)
T PLN03118 152 CLFLECSAKTRE--------------NVEQCFEELALKIM 177 (211)
T ss_pred CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 468999999998 99999999998774
No 149
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.71 E-value=1.9e-16 Score=153.61 Aligned_cols=153 Identities=24% Similarity=0.220 Sum_probs=107.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
.++|+++|++|+|||||+++|+...... . ..|+......+.+++..+.+|||||+..|......+
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~-----------~----~~t~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 79 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH-----------T----SPTIGSNVEEIVYKNIRFLMWDIGGQESLRSSWNTY 79 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC-----------c----CCccccceEEEEECCeEEEEEECCCCHHHHHHHHHH
Confidence 4689999999999999999998652211 0 122333344566778999999999999999999999
Q ss_pred HhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Q 006068 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~-~~~~ 213 (662)
++.+|++|+|+|+.+... ......+..+.. .++|+++++||+|+.+... ..++.+ . ++... ....
T Consensus 80 ~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~~--~~~i~~----~---l~~~~~~~~~ 150 (174)
T cd04153 80 YTNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMT--PAEISE----S---LGLTSIRDHT 150 (174)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCCCC--HHHHHH----H---hCcccccCCc
Confidence 999999999999987532 222233333322 3589999999999865311 122221 1 12111 1234
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
++++++||++|. |+++++++|.+
T Consensus 151 ~~~~~~SA~~g~--------------gi~e~~~~l~~ 173 (174)
T cd04153 151 WHIQGCCALTGE--------------GLPEGLDWIAS 173 (174)
T ss_pred eEEEecccCCCC--------------CHHHHHHHHhc
Confidence 689999999998 99999999864
No 150
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.71 E-value=1.2e-16 Score=154.83 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=107.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|..|+|||||+.+++..........++.+. . .....+......++||||||..+|......++
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~----------~-~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~ 71 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDA----------Y-KQQARIDNEPALLDILDTAGQAEFTAMRDQYM 71 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccce----------E-EEEEEECCEEEEEEEEeCCCchhhHHHhHHHh
Confidence 479999999999999999999764332222222111 1 11112222336799999999999999999999
Q ss_pred hhcceEEEEeeCCCCchhhHHH-HHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPLAQTKF-VLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+|++|+|+|..+....+... ++..+.+ .++|+++|+||+|+.+..... .++...+.... .+|
T Consensus 72 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~v~----~~~~~~~a~~~-------~~~ 140 (172)
T cd04141 72 RCGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVT----TEEGRNLAREF-------NCP 140 (172)
T ss_pred hcCCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhcCccC----HHHHHHHHHHh-------CCE
Confidence 9999999999998876555543 3333332 368999999999985432111 11222232322 357
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++||++|. |++++|+.+++.+-
T Consensus 141 ~~e~Sa~~~~--------------~v~~~f~~l~~~~~ 164 (172)
T cd04141 141 FFETSAALRH--------------YIDDAFHGLVREIR 164 (172)
T ss_pred EEEEecCCCC--------------CHHHHHHHHHHHHH
Confidence 9999999998 99999999987653
No 151
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.71 E-value=1.3e-16 Score=151.87 Aligned_cols=156 Identities=21% Similarity=0.208 Sum_probs=106.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|.+|+|||||+++|+..........+..+. ......+......+.+|||||+.+|......++
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~ 69 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS-----------YRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYH 69 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh-----------EEEEEEECCEEEEEEEEECCChhhhhHHHHHHh
Confidence 379999999999999999999764332221111111 111222333457899999999999999999999
Q ss_pred hhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+|++++|+|..+.-. .....++..... .++|+++|+||+|+....... ..+...+...++ +|
T Consensus 70 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~~----~~~~~~~~~~~~-------~~ 138 (164)
T cd04139 70 RSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVS----SEEAANLARQWG-------VP 138 (164)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccccccC----HHHHHHHHHHhC-------Ce
Confidence 99999999999876432 112333333333 579999999999986421111 111222222222 57
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++++.+.+.+
T Consensus 139 ~~~~Sa~~~~--------------gi~~l~~~l~~~~ 161 (164)
T cd04139 139 YVETSAKTRQ--------------NVEKAFYDLVREI 161 (164)
T ss_pred EEEeeCCCCC--------------CHHHHHHHHHHHH
Confidence 9999999999 9999999998654
No 152
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.71 E-value=1.6e-16 Score=154.40 Aligned_cols=159 Identities=18% Similarity=0.142 Sum_probs=107.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE----------ecCeeEEEEeCCC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS----------WRENELNMVDTPG 128 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~----------~~~~~iniIDTPG 128 (662)
...+|+++|..|+|||||++++...........++ |.+.......+. .....+.||||||
T Consensus 3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G 72 (180)
T cd04127 3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTV----------GIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG 72 (180)
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc----------ceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC
Confidence 35689999999999999999998764332221111 111111111111 1236799999999
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~ 203 (662)
+..|.......++.+|++|+|+|+.+....+.. .++..... .+.|+++|.||+|+....... .++...+..
T Consensus 73 ~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v~----~~~~~~~~~ 148 (180)
T cd04127 73 QERFRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVS----EEQAKALAD 148 (180)
T ss_pred hHHHHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchhcCccC----HHHHHHHHH
Confidence 999999999999999999999999875443333 34444433 267899999999985432211 122333333
Q ss_pred hcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++ +|++++||++|. |++++++.|.+.+
T Consensus 149 ~~~-------~~~~e~Sak~~~--------------~v~~l~~~l~~~~ 176 (180)
T cd04127 149 KYG-------IPYFETSAATGT--------------NVEKAVERLLDLV 176 (180)
T ss_pred HcC-------CeEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 332 479999999998 9999999987643
No 153
>cd03690 Tet_II Tet_II: This subfamily represents domain II of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to domain II of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.71 E-value=3.7e-17 Score=139.58 Aligned_cols=85 Identities=26% Similarity=0.308 Sum_probs=79.0
Q ss_pred CCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc
Q 006068 260 DAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (662)
Q Consensus 260 ~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~ 339 (662)
++||.++|||+.+|++.|+++++|||+|+|+.||.|++.. . ..+|+.+|+.++|.++.++++|.|||||++.
T Consensus 1 ~~p~~~~Vfkv~~d~~~G~la~~RV~sG~l~~g~~v~~~~-~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~ai~ 72 (85)
T cd03690 1 ESELSGTVFKIERDDKGERLAYLRLYSGTLRLRDSVRVNR-E-------EKIKITELRVFNNGEVVTADTVTAGDIAILT 72 (85)
T ss_pred CCCcEEEEEEeEECCCCCeEEEEEEccCEEcCCCEEEeCC-C-------cEEEeceeEEEeCCCeEECcEECCCCEEEEE
Confidence 4799999999999999999999999999999999998764 1 4579999999999999999999999999999
Q ss_pred CcCCCccCceeee
Q 006068 340 GMTKPSIGHTVAN 352 (662)
Q Consensus 340 gl~~~~~GdTl~~ 352 (662)
|++++.+||||++
T Consensus 73 gl~~~~~Gdtl~~ 85 (85)
T cd03690 73 GLKGLRVGDVLGD 85 (85)
T ss_pred CCCCCcCccccCC
Confidence 9999999999963
No 154
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.71 E-value=1.6e-16 Score=156.52 Aligned_cols=156 Identities=20% Similarity=0.177 Sum_probs=105.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..|+|||||+++|+..........++.+. . .....+......++||||||+.+|......+++
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~----------~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 69 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDS----------Y-RKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIR 69 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhh----------E-EEEEEECCEEEEEEEEECCCchhhHHHHHHHHH
Confidence 48999999999999999999764432222222111 0 111112222356899999999999998999999
Q ss_pred hcceEEEEeeCCCCchhhH-HHHHHHHHH------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 142 MVEGAILVVDAGEGPLAQT-KFVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt-~~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
.+|++|+|+|..+...... ..++..+.. .+.|+|+|+||+|+....... ..+...+...++ +
T Consensus 70 ~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~----~~~~~~~~~~~~-------~ 138 (190)
T cd04144 70 EGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS----TEEGAALARRLG-------C 138 (190)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccC----HHHHHHHHHHhC-------C
Confidence 9999999999877544333 334444432 367899999999985422211 111222222222 4
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++++||++|. |++++++.+++.+-
T Consensus 139 ~~~e~SAk~~~--------------~v~~l~~~l~~~l~ 163 (190)
T cd04144 139 EFIEASAKTNV--------------NVERAFYTLVRALR 163 (190)
T ss_pred EEEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 68999999998 99999999987664
No 155
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.71 E-value=6.7e-17 Score=151.13 Aligned_cols=149 Identities=28% Similarity=0.314 Sum_probs=104.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~~ 138 (662)
.+|+++|++|+|||||+++|+... .+.+..++++.......+.+++ +.+++|||||+.+|......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 69 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK------------FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRL 69 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC------------CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHH
Confidence 589999999999999999998762 2233345666666665566777 78999999999999776666
Q ss_pred HHhhcceEEEEeeCC-------CCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 139 VVGMVEGAILVVDAG-------EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~-------~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+.++.++.++|.. ++...+...++..+.. +.|+++++||+|+...+ ........+..++.
T Consensus 70 ~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~-~~p~ivv~nK~D~~~~~------~~~~~~~~~~~~~~---- 138 (161)
T TIGR00231 70 YYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES-NVPIILVGNKIDLRDAK------LKTHVAFLFAKLNG---- 138 (161)
T ss_pred HHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc-CCcEEEEEEcccCCcch------hhHHHHHHHhhccC----
Confidence 666666666666543 3333444444444433 88999999999996532 22223333333332
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHH
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I 248 (662)
.|++++||++|. |+.++++.|
T Consensus 139 --~~~~~~sa~~~~--------------gv~~~~~~l 159 (161)
T TIGR00231 139 --EPIIPLSAETGK--------------NIDSAFKIV 159 (161)
T ss_pred --CceEEeecCCCC--------------CHHHHHHHh
Confidence 359999999998 999999886
No 156
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.71 E-value=2.3e-16 Score=152.27 Aligned_cols=154 Identities=15% Similarity=0.185 Sum_probs=104.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|+.++|||||+++|...... .....-|.++ ..+.+.+..++||||||+..|......+
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-----------~~~~t~g~~~----~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 73 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-----------TTIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHY 73 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-----------cccCCcccce----EEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 468999999999999999999754211 0011112222 2345578899999999999998888889
Q ss_pred HhhcceEEEEeeCCCCc-hhhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
++.+|++|+|+|+.+.. +.....+|..... .+.|+++|+||+|+..... .+++.+.+..... ....+
T Consensus 74 ~~~a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------~~~i~~~~~~~~~--~~~~~ 145 (168)
T cd04149 74 YTGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMK------PHEIQEKLGLTRI--RDRNW 145 (168)
T ss_pred hccCCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCCC------HHHHHHHcCCCcc--CCCcE
Confidence 99999999999988742 3333444444432 3689999999999854211 1122222210000 11235
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+++++||++|. |++++|++|.+
T Consensus 146 ~~~~~SAk~g~--------------gv~~~~~~l~~ 167 (168)
T cd04149 146 YVQPSCATSGD--------------GLYEGLTWLSS 167 (168)
T ss_pred EEEEeeCCCCC--------------ChHHHHHHHhc
Confidence 78999999999 99999999864
No 157
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.71 E-value=2.7e-16 Score=150.10 Aligned_cols=156 Identities=20% Similarity=0.181 Sum_probs=105.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|.+|+|||||+++++..........++.+ .......+......++||||||+..|......++
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-----------~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-----------FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYI 70 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-----------eEEEEEEECCEEEEEEEEECCCcccccchHHHHH
Confidence 37999999999999999999976433222221111 1112222222335688999999999999888899
Q ss_pred hhcceEEEEeeCCCCchh-hHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+|++|+|+|..+...- ....++..+.+ .++|+++|+||+|+....... ..+...+.... .+|
T Consensus 71 ~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~~~ 139 (163)
T cd04176 71 KNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVS----SAEGRALAEEW-------GCP 139 (163)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcCccC----HHHHHHHHHHh-------CCE
Confidence 999999999998875432 23344444443 478999999999985321111 01112222222 247
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |+.++++.+.+.+
T Consensus 140 ~~~~Sa~~~~--------------~v~~l~~~l~~~l 162 (163)
T cd04176 140 FMETSAKSKT--------------MVNELFAEIVRQM 162 (163)
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHhc
Confidence 8999999998 9999999998754
No 158
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.71 E-value=1.7e-16 Score=152.90 Aligned_cols=161 Identities=20% Similarity=0.231 Sum_probs=107.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..++|||||+++|... ..... ..|+......+.+++..+++|||||+..|...+..+++
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~--------------~~t~g~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~ 65 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGE-IPKKV--------------APTVGFTPTKLRLDKYEVCIFDLGGGANFRGIWVNYYA 65 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCC-CCccc--------------cCcccceEEEEEECCEEEEEEECCCcHHHHHHHHHHHc
Confidence 4899999999999999999754 11111 11222223456678899999999999999999999999
Q ss_pred hcceEEEEeeCCCCc-hhhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++|+|+|+.+.. ......++..+.. .+.|+++|+||+|+++.... .++.+.+ + +..+ +......+++
T Consensus 66 ~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~--~~i~~~~-~-l~~~-~~~~~~~~~~ 140 (167)
T cd04161 66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLG--ADVIEYL-S-LEKL-VNENKSLCHI 140 (167)
T ss_pred CCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCCH--HHHHHhc-C-cccc-cCCCCceEEE
Confidence 999999999987743 2333445554443 37899999999999765421 1222111 0 0111 1111234678
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+++||++|++.. ...|+.+-|++|.+
T Consensus 141 ~~~Sa~~g~~~~--------~~~g~~~~~~wl~~ 166 (167)
T cd04161 141 EPCSAIEGLGKK--------IDPSIVEGLRWLLA 166 (167)
T ss_pred EEeEceeCCCCc--------cccCHHHHHHHHhc
Confidence 999999995211 11289999999864
No 159
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.71 E-value=7.1e-17 Score=154.43 Aligned_cols=143 Identities=21% Similarity=0.295 Sum_probs=100.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC----ccchHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH----ADFGGEV 136 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh----~dF~~ev 136 (662)
++|+++|++|+|||||+++|.+.. ... .....+.|... ++|||||+ .++..++
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~-------------~~~--------~~~~~v~~~~~--~~iDtpG~~~~~~~~~~~~ 58 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNY-------------TLA--------RKTQAVEFNDK--GDIDTPGEYFSHPRWYHAL 58 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC-------------ccC--------ccceEEEECCC--CcccCCccccCCHHHHHHH
Confidence 479999999999999999987431 000 01122233322 37999996 4566666
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
..+++.+|++|+|+|+.++....+..++.. ..+.|+++++||+|+.+.+.+ .+.+++..+++ ..|+
T Consensus 59 ~~~~~~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~~~-------~~~~~~~~~~~-----~~p~ 124 (158)
T PRK15467 59 ITTLQDVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDADVA-------ATRKLLLETGF-----EEPI 124 (158)
T ss_pred HHHHhcCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCcccHH-------HHHHHHHHcCC-----CCCE
Confidence 677899999999999998765444333332 246789999999999654332 23344444443 1489
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+++||++|. |+++|++.+.+.++.
T Consensus 125 ~~~Sa~~g~--------------gi~~l~~~l~~~~~~ 148 (158)
T PRK15467 125 FELNSHDPQ--------------SVQQLVDYLASLTKQ 148 (158)
T ss_pred EEEECCCcc--------------CHHHHHHHHHHhchh
Confidence 999999998 999999999887754
No 160
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.71 E-value=3.7e-16 Score=148.01 Aligned_cols=158 Identities=23% Similarity=0.183 Sum_probs=109.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------ 133 (662)
.++|+++|.+|+|||||+++|++..-. ........+.......+...+..+.+|||||+.+..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~ 71 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKIS-----------IVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGER 71 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceE-----------eccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHH
Confidence 458999999999999999999865211 011111223333333344556889999999987543
Q ss_pred --HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 134 --GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 134 --~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
......+..+|++++|+|+.+........+++.+...+.|.++|+||+|+.. ......+..+.+ .....
T Consensus 72 ~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~-~~~~~~~~~~~~---~~~~~----- 142 (168)
T cd04163 72 MVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK-DKEDLLPLLEKL---KELGP----- 142 (168)
T ss_pred HHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc-cHHHHHHHHHHH---HhccC-----
Confidence 2345568889999999999987666666777777778899999999999853 222222222222 11111
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
..|++.+|++++. |+++|++.|.+++
T Consensus 143 -~~~~~~~s~~~~~--------------~~~~l~~~l~~~~ 168 (168)
T cd04163 143 -FAEIFPISALKGE--------------NVDELLEEIVKYL 168 (168)
T ss_pred -CCceEEEEeccCC--------------ChHHHHHHHHhhC
Confidence 2579999999998 9999999987653
No 161
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.71 E-value=3.1e-16 Score=149.86 Aligned_cols=152 Identities=18% Similarity=0.218 Sum_probs=103.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|+.++|||||+.+|....... .. ..-|.. ...+.++...++||||||+..|...+..+++
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~~-~~----------pt~g~~----~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~ 66 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIVT-TI----------PTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 66 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc-cC----------CCCCcc----eEEEEECCEEEEEEECCCCHhHHHHHHHHhc
Confidence 69999999999999999997542211 11 111222 2335567889999999999999888889999
Q ss_pred hcceEEEEeeCCCCc-hhhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++|+|+|+.+.. ..+...+|..+.. .+.|+++++||+|+.+... ..++. ..+....+ ....+.+
T Consensus 67 ~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~----~~~~~~~~--~~~~~~~ 138 (159)
T cd04150 67 NTQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMS--AAEVT----DKLGLHSL--RNRNWYI 138 (159)
T ss_pred CCCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCCC--HHHHH----HHhCcccc--CCCCEEE
Confidence 999999999987642 2333444444432 2589999999999864322 11221 11210011 1123567
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+++||++|. |++++|++|.+
T Consensus 139 ~~~Sak~g~--------------gv~~~~~~l~~ 158 (159)
T cd04150 139 QATCATSGD--------------GLYEGLDWLSN 158 (159)
T ss_pred EEeeCCCCC--------------CHHHHHHHHhc
Confidence 899999999 99999999864
No 162
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.2e-16 Score=152.31 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=116.4
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHH
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev 136 (662)
.+...+|.|+|..|+|||.|+-++...+..+.+.+|+ |+.+......++.+..+++||||.|+++|...+
T Consensus 6 ~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTI----------GVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit 75 (205)
T KOG0084|consen 6 YDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTI----------GVDFKIRTVELDGKTIKLQIWDTAGQERFRTIT 75 (205)
T ss_pred cceEEEEEEECCCCcChhhhhhhhccCCcchhhccee----------eeEEEEEEeeecceEEEEEeeeccccHHHhhhh
Confidence 4568899999999999999999998764433332222 454444444455556799999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+++.|+|+|+|+|.++.-..... .|+..+.++ ++|.++|.||+|+.+......++ ..++...+
T Consensus 76 ~syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~----a~~fa~~~------- 144 (205)
T KOG0084|consen 76 SSYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEE----AQEFADEL------- 144 (205)
T ss_pred HhhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhheecCHHH----HHHHHHhc-------
Confidence 9999999999999998875444443 455566655 67899999999996543322222 22332233
Q ss_pred Ccc-EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 213 DFP-VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 213 ~~P-vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+.| ++++||+.+. ++++.|..+...+
T Consensus 145 ~~~~f~ETSAK~~~--------------NVe~~F~~la~~l 171 (205)
T KOG0084|consen 145 GIPIFLETSAKDST--------------NVEDAFLTLAKEL 171 (205)
T ss_pred CCcceeecccCCcc--------------CHHHHHHHHHHHH
Confidence 346 9999999998 8888887776544
No 163
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.71 E-value=3.1e-16 Score=148.28 Aligned_cols=169 Identities=21% Similarity=0.196 Sum_probs=129.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCCccchHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh~dF~~ev~~ 138 (662)
..+|+|+|+.++||||++.++..+.........-.++. ...|.+|+...+.++.+.+ +.+.|+|||||.+|.-.++-
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~--k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~fm~~~ 87 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSG--KGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFKFMWEI 87 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeecccccccc--ccccceeEeecccceEEcCcceEEEecCCCcHHHHHHHHH
Confidence 35899999999999999999998854211000000111 1145688888888888876 99999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHHHHHHHcC-CCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG-LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~-lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
.++.++++|++||++.+.....++.+......+ +|++|++||.|+.++.+. +++.+++... ....|++
T Consensus 88 l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~pp------e~i~e~l~~~-----~~~~~vi 156 (187)
T COG2229 88 LSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPP------EKIREALKLE-----LLSVPVI 156 (187)
T ss_pred HhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCCH------HHHHHHHHhc-----cCCCcee
Confidence 999999999999999887777788888888888 999999999999887652 2233333221 1357899
Q ss_pred EcccccCccCCccCCCCCCCccchHHHHHHHHhh-CCCC
Q 006068 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH-VPPP 255 (662)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~-lP~p 255 (662)
..+|.+++ +..+.++.+..+ .+.+
T Consensus 157 ~~~a~e~~--------------~~~~~L~~ll~~~~~~~ 181 (187)
T COG2229 157 EIDATEGE--------------GARDQLDVLLLKDLLGS 181 (187)
T ss_pred eeecccch--------------hHHHHHHHHHhhcccCc
Confidence 99999998 888888887766 4443
No 164
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.70 E-value=1.7e-16 Score=156.18 Aligned_cols=165 Identities=17% Similarity=0.151 Sum_probs=110.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
++|+|+|..|+|||||+++|+..........++.+. . .....+......++||||||+.+|......++
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~----------~-~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~ 69 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFEN----------Y-VHDIFVDGLHIELSLWDTAGQEEFDRLRSLSY 69 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceee----------e-EEEEEECCEEEEEEEEECCCChhccccccccc
Confidence 479999999999999999998764432222222111 0 11112222346899999999999977777788
Q ss_pred hhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHH--H------HHHHHHHHHHhcCCC
Q 006068 141 GMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCD--E------VESLVFDLFANLGAT 208 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~--e------i~~~v~~l~~~~g~~ 208 (662)
+.+|++|+|+|..+....+.. .|+..+... +.|+|+|.||+|+......... . ..++...+....+
T Consensus 70 ~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-- 147 (189)
T cd04134 70 ADTDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRIN-- 147 (189)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcC--
Confidence 999999999998876544443 244555443 7899999999999654321100 0 0112222322222
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
.++++++||++|. |++++|+.|.+.+..|.
T Consensus 148 ----~~~~~e~SAk~~~--------------~v~e~f~~l~~~~~~~~ 177 (189)
T cd04134 148 ----ALRYLECSAKLNR--------------GVNEAFTEAARVALNVR 177 (189)
T ss_pred ----CCEEEEccCCcCC--------------CHHHHHHHHHHHHhccc
Confidence 2568999999998 99999999998876554
No 165
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.70 E-value=2.7e-16 Score=156.09 Aligned_cols=158 Identities=20% Similarity=0.251 Sum_probs=108.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev 136 (662)
...+|+++|..|+|||||+++|+......... ...|+.+ ....+.+. ...++||||||+..|....
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~----------~t~~~~~--~~~~~~~~~~~~~l~l~D~~G~~~~~~~~ 72 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYI----------TTIGVDF--KIRTVEINGERVKLQIWDTAGQERFRTIT 72 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcC----------cccccee--EEEEEEECCEEEEEEEEeCCCchhHHHHH
Confidence 35799999999999999999998763221111 1112222 22333333 3578999999999999889
Q ss_pred HHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
..+++.+|++|+|+|+.+....+. ..++...... ..|++||+||+|+....... .++...+.... .
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~~----~~~~~~~~~~~-------~ 141 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVE----TEDAYKFAGQM-------G 141 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccccC----HHHHHHHHHHc-------C
Confidence 999999999999999987544333 3344444332 57889999999986432111 12222233322 2
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++|++|.+.+.
T Consensus 142 ~~~~e~Sa~~~~--------------gi~~lf~~l~~~~~ 167 (199)
T cd04110 142 ISLFETSAKENI--------------NVEEMFNCITELVL 167 (199)
T ss_pred CEEEEEECCCCc--------------CHHHHHHHHHHHHH
Confidence 569999999999 99999999987764
No 166
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.70 E-value=3.7e-16 Score=153.93 Aligned_cols=157 Identities=18% Similarity=0.157 Sum_probs=110.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev 136 (662)
...+|+++|..++|||||+.++........ ....++.......+..+ ...++||||||+.+|....
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~------------~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~ 72 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQDGSTESP------------YGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIF 72 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCC------------CCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHH
Confidence 467999999999999999999986532111 11122222222333333 4789999999999999988
Q ss_pred HHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
..+++.+|++|||+|.++....+. ..|+..+.+. ++|+|||.||+|+...+... .+++.++....+
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~~~~v~----~~~~~~~a~~~~------- 141 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVA----TEQAQAYAERNG------- 141 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccchhccCCC----HHHHHHHHHHcC-------
Confidence 899999999999999887544333 3455555443 68899999999985432211 223334443333
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|. |++++|+.|.+.+
T Consensus 142 ~~~~e~SAk~g~--------------~V~~~F~~l~~~i 166 (189)
T cd04121 142 MTFFEVSPLCNF--------------NITESFTELARIV 166 (189)
T ss_pred CEEEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 469999999999 9999999988755
No 167
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.70 E-value=1.9e-16 Score=153.16 Aligned_cols=159 Identities=20% Similarity=0.163 Sum_probs=105.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|+.++|||||+++++.......+..++ +.+.......+......++||||||+.+|.......++
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~----------~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~ 71 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATI----------GVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYR 71 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCCCce----------eeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhc
Confidence 68999999999999999999874432221111 22222222222222467999999999999988899999
Q ss_pred hcceEEEEeeCCCCchhh-HHHHHHHHHHcC----CCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGPLAQ-TKFVLAKALKYG----LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~~----lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++++|+|+.+..... ...|+....+.. .|+++|.||+|+...+.. ....++...+...++ .++
T Consensus 72 ~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~--~~~~~~~~~~~~~~~-------~~~ 142 (170)
T cd04108 72 GAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY--ALMEQDAIKLAAEMQ-------AEY 142 (170)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCccccc--cccHHHHHHHHHHcC-------CeE
Confidence 999999999997743332 334454444432 457899999998543210 111122223333332 468
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++||++|. |++++++.|.+.+.
T Consensus 143 ~e~Sa~~g~--------------~v~~lf~~l~~~~~ 165 (170)
T cd04108 143 WSVSALSGE--------------NVREFFFRVAALTF 165 (170)
T ss_pred EEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 999999998 99999999987653
No 168
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.70 E-value=3.6e-16 Score=150.47 Aligned_cols=158 Identities=18% Similarity=0.190 Sum_probs=106.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|.+|+|||||+++|+..........++ +-. ......+......+++|||||+.+|.......+
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~----------~~~-~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 70 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI----------EDS-YRKQVEIDGRQCDLEILDTAGTEQFTAMRELYI 70 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcc----------hhe-EEEEEEECCEEEEEEEEeCCCcccchhhhHHHH
Confidence 379999999999999999998764322211111 100 111112222346889999999999999999999
Q ss_pred hhcceEEEEeeCCCCchhhHHH-HHHHHH----HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPLAQTKF-VLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~~-~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+|++++|+|..+....+... +..... ..++|+++++||+|+....... .++..++....+ .+|
T Consensus 71 ~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~~----~~~~~~~~~~~~------~~~ 140 (168)
T cd04177 71 KSGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVS----REDGVSLSQQWG------NVP 140 (168)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccCccC----HHHHHHHHHHcC------Cce
Confidence 9999999999988754333222 222222 3478999999999985433211 112222222222 257
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++||++|. |++++|+.++.++.
T Consensus 141 ~~~~SA~~~~--------------~i~~~f~~i~~~~~ 164 (168)
T cd04177 141 FYETSARKRT--------------NVDEVFIDLVRQII 164 (168)
T ss_pred EEEeeCCCCC--------------CHHHHHHHHHHHHh
Confidence 9999999998 99999999987654
No 169
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.70 E-value=3.6e-16 Score=157.63 Aligned_cols=159 Identities=17% Similarity=0.111 Sum_probs=110.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
....+|+++|..|+|||||+++++.......... .-|.++............+++||||||+.+|.....
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~----------tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 80 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEP----------TIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRD 80 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCccCC----------ccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhH
Confidence 3457999999999999999999987643222111 123333332222233457999999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCchhhHHH-HHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTKF-VLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
.+++.+|++|+|+|..+....+... |+..+.+ .++|+++|+||+|+...... .+++ .+.... .+
T Consensus 81 ~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v~-----~~~~-~~~~~~-------~~ 147 (219)
T PLN03071 81 GYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKNRQVK-----AKQV-TFHRKK-------NL 147 (219)
T ss_pred HHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhhccCC-----HHHH-HHHHhc-------CC
Confidence 8899999999999998765544443 3343332 36899999999998532110 1111 222221 35
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++++||++|. |++++|++|.+.+.
T Consensus 148 ~~~e~SAk~~~--------------~i~~~f~~l~~~~~ 172 (219)
T PLN03071 148 QYYEISAKSNY--------------NFEKPFLYLARKLA 172 (219)
T ss_pred EEEEcCCCCCC--------------CHHHHHHHHHHHHH
Confidence 68999999998 99999999987764
No 170
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.70 E-value=4.2e-16 Score=146.43 Aligned_cols=153 Identities=22% Similarity=0.241 Sum_probs=106.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|++++|||||+++|+........ ....+.+..............+++|||||+..|......+++
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 71 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----------KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYR 71 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc----------CCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhc
Confidence 7999999999999999999876322111 111233333333333334578999999999999999999999
Q ss_pred hcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 142 MVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
.+|++++|+|+.+...... ..++...... +.|+++++||+|....... ..+++.++.... .++++
T Consensus 72 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~-------~~~~~ 140 (159)
T cd00154 72 GAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQV----STEEAQQFAKEN-------GLLFF 140 (159)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccccccccc----cHHHHHHHHHHc-------CCeEE
Confidence 9999999999987433332 3345455554 4899999999999521111 123333333332 35799
Q ss_pred EcccccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
++||+++. |+++++++|.
T Consensus 141 ~~sa~~~~--------------~i~~~~~~i~ 158 (159)
T cd00154 141 ETSAKTGE--------------NVEELFQSLA 158 (159)
T ss_pred EEecCCCC--------------CHHHHHHHHh
Confidence 99999998 9999999875
No 171
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.69 E-value=2e-16 Score=184.80 Aligned_cols=153 Identities=25% Similarity=0.323 Sum_probs=115.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH-----
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE----- 135 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e----- 135 (662)
.+|+++|++|+|||||+|+|++.. .......|.|+..+...+.++++++++|||||+.+|...
T Consensus 4 ~~IaLvG~pNvGKSTLfN~Ltg~~------------~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s 71 (772)
T PRK09554 4 LTIGLIGNPNSGKTTLFNQLTGAR------------QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTS 71 (772)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC------------CccCCCCCceEeeEEEEEEcCceEEEEEECCCcccccccccccc
Confidence 589999999999999999997651 123345799999999899999999999999999887531
Q ss_pred -----HHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 136 -----VERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 136 -----v~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
...++ ..+|++++|+|+++.. +...++.++.+.++|+++|+||+|+.+.+. +...+..+-+.+|
T Consensus 72 ~~E~i~~~~l~~~~aD~vI~VvDat~le--r~l~l~~ql~e~giPvIvVlNK~Dl~~~~~-----i~id~~~L~~~LG-- 142 (772)
T PRK09554 72 LDEQIACHYILSGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQN-----IRIDIDALSARLG-- 142 (772)
T ss_pred HHHHHHHHHHhccCCCEEEEEecCCcch--hhHHHHHHHHHcCCCEEEEEEchhhhhccC-----cHHHHHHHHHHhC--
Confidence 11222 3689999999998753 345577888899999999999999853221 1112222222333
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |+++|++.+.+..+
T Consensus 143 -----~pVvpiSA~~g~--------------GIdeL~~~I~~~~~ 168 (772)
T PRK09554 143 -----CPVIPLVSTRGR--------------GIEALKLAIDRHQA 168 (772)
T ss_pred -----CCEEEEEeecCC--------------CHHHHHHHHHHhhh
Confidence 579999999998 99999999987654
No 172
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.69 E-value=4.2e-16 Score=147.84 Aligned_cols=154 Identities=19% Similarity=0.197 Sum_probs=104.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccce--eEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGI--TIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergi--Ti~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
+|+++|..|+|||||+++|+........ .+.+ +.......+......+++|||||+..|.......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~ 69 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH------------ESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIY 69 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc------------CCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHH
Confidence 7999999999999999999976332111 1111 1111222222234579999999999998888888
Q ss_pred HhhcceEEEEeeCCCCchhhHHH-HHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPLAQTKF-VLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++.+|++++|+|..++...+... ++..+.. .++|+++|+||+|+....... .+++..+....+ ++
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~~----~~~~~~~~~~~~-------~~ 138 (162)
T cd04123 70 YRDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVS----KSEAEEYAKSVG-------AK 138 (162)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC----HHHHHHHHHHcC-------CE
Confidence 99999999999998765444333 3333332 268999999999986432111 122222333222 46
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++++++.+.+
T Consensus 139 ~~~~s~~~~~--------------gi~~~~~~l~~~~ 161 (162)
T cd04123 139 HFETSAKTGK--------------GIEELFLSLAKRM 161 (162)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHh
Confidence 8999999998 9999999997754
No 173
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.69 E-value=2e-16 Score=152.65 Aligned_cols=159 Identities=14% Similarity=0.085 Sum_probs=105.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|++++|||||+++++..........++.+ .......+....+.++||||||+.+|.......++
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~-----------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 70 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD-----------HYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYP 70 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-----------eeEEEEEECCEEEEEEEEeCCCcccccccccccCC
Confidence 7999999999999999999976432222111111 11111222223466889999999999887778889
Q ss_pred hcceEEEEeeCCCCchhhHH--HHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHhcCCC
Q 006068 142 MVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLGAT 208 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~~g~~ 208 (662)
.+|++|+|+|..+.-..+.. .+...+.. .++|+++|+||+|+.+..... ... .++...+...++.
T Consensus 71 ~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~- 148 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTL-ARLNDMKEKPVTVEQGQKLAKEIGA- 148 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhH-HHHhhccCCCCCHHHHHHHHHHcCC-
Confidence 99999999998876443333 23333332 478999999999985432211 100 1222333334443
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.+++++||++|. |++++|+.++..+
T Consensus 149 -----~~~~e~Sa~~~~--------------gi~~~f~~~~~~~ 173 (174)
T cd04135 149 -----HCYVECSALTQK--------------GLKTVFDEAILAI 173 (174)
T ss_pred -----CEEEEecCCcCC--------------CHHHHHHHHHHHh
Confidence 358999999998 9999999987653
No 174
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.69 E-value=3.5e-16 Score=155.26 Aligned_cols=157 Identities=18% Similarity=0.137 Sum_probs=102.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccch----HH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFG----GE 135 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~----~e 135 (662)
+|+|+|..|+|||||+++++......... ..++.......+.+++ +.++||||||+.+|. .+
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~~~------------pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e 69 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEEYI------------PTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQE 69 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcccC------------CccccccceeEEEECCEEEEEEEEeCCCcccCCccchhH
Confidence 79999999999999999998763322111 1111111112233444 678899999987652 12
Q ss_pred ----HHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 136 ----VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 136 ----v~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
...+++.+|++|+|+|+.+....+.. .+++.+.+ .++|+|+|+||+|+...+... .+++.++..+
T Consensus 70 ~~~~~~~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~~----~~~~~~~~~~ 145 (198)
T cd04142 70 WMDPRFRGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAP----RHVLSVLVRK 145 (198)
T ss_pred HHHHHHhhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccccccc----HHHHHHHHHH
Confidence 34567899999999999876544433 33343432 468999999999995432211 1112222221
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
. ..+|++++||++|. |+++||+.+.+.+-.
T Consensus 146 ~------~~~~~~e~Sak~g~--------------~v~~lf~~i~~~~~~ 175 (198)
T cd04142 146 S------WKCGYLECSAKYNW--------------HILLLFKELLISATT 175 (198)
T ss_pred h------cCCcEEEecCCCCC--------------CHHHHHHHHHHHhhc
Confidence 1 13679999999999 999999999876643
No 175
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.69 E-value=5.8e-16 Score=150.48 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=107.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|..++|||||+++|...... + .. .|+......+.+++..++||||||+..|...+..+
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~--------~---~~----~t~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~ 77 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV--------T---TI----PTIGFNVETVTYKNISFTVWDVGGQDKIRPLWRHY 77 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC--------C---cC----CccccceEEEEECCEEEEEEECCCChhhHHHHHHH
Confidence 468999999999999999999754211 0 01 12222223455678899999999999999988999
Q ss_pred HhhcceEEEEeeCCCCc-hhhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Q 006068 140 VGMVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~-~~~~ 213 (662)
++.+|++|+|+|+++.. .....++|..+.. .+.|++||+||+|+.+.... .++. +. ++... ....
T Consensus 78 ~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~i~----~~---~~~~~~~~~~ 148 (175)
T smart00177 78 YTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKA--AEIT----EK---LGLHSIRDRN 148 (175)
T ss_pred hCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCCCH--HHHH----HH---hCccccCCCc
Confidence 99999999999987642 3344455555432 35799999999999654221 1222 11 12111 1113
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+.++++||++|. |++++|++|.+.+
T Consensus 149 ~~~~~~Sa~~g~--------------gv~e~~~~l~~~~ 173 (175)
T smart00177 149 WYIQPTCATSGD--------------GLYEGLTWLSNNL 173 (175)
T ss_pred EEEEEeeCCCCC--------------CHHHHHHHHHHHh
Confidence 457789999999 9999999998764
No 176
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.69 E-value=4.2e-16 Score=148.19 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=101.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCccchHHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.|+++|.+|+|||||+++|........ ....|.++ ..+.+ ..+.+++|||||+..|...+...+
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----------~~t~~~~~----~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~ 65 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----------IPTVGFNV----EMLQLEKHLSLTVWDVGGQEKMRTVWKCYL 65 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----------cCccCcce----EEEEeCCceEEEEEECCCCHhHHHHHHHHh
Confidence 489999999999999999987632110 11112222 12222 357899999999999988888899
Q ss_pred hhcceEEEEeeCCCCch-hhHHHHHHHHH----HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPL-AQTKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~-~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
..+|++|+|+|+.+... .....++.... ..+.|+++|+||+|+..... ..++ ...+...... ....++
T Consensus 66 ~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~i----~~~~~~~~~~-~~~~~~ 138 (160)
T cd04156 66 ENTDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALT--AEEI----TRRFKLKKYC-SDRDWY 138 (160)
T ss_pred ccCCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCcC--HHHH----HHHcCCcccC-CCCcEE
Confidence 99999999999987542 22223333332 25789999999999854321 1122 2111111111 112467
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
++++||++|. |++++++.|.+
T Consensus 139 ~~~~Sa~~~~--------------gv~~~~~~i~~ 159 (160)
T cd04156 139 VQPCSAVTGE--------------GLAEAFRKLAS 159 (160)
T ss_pred EEecccccCC--------------ChHHHHHHHhc
Confidence 9999999998 99999999864
No 177
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.69 E-value=2.3e-16 Score=151.12 Aligned_cols=156 Identities=20% Similarity=0.210 Sum_probs=102.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-chHHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-FGGEVERVV 140 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d-F~~ev~~~l 140 (662)
+|+++|++|+|||||+++++..........+. + +.......+.++...++||||||+.. +.......+
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~----------~-~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~ 69 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNL----------E-SLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSI 69 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCccccccCCCh----------H-HhceEEEEECCEEEEEEEEECCCCcccccchHHHHH
Confidence 58999999999999999998653221111111 0 11222233344456799999999985 456778899
Q ss_pred hhcceEEEEeeCCCCchhhHH-HHHHHHHH-----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 141 GMVEGAILVVDAGEGPLAQTK-FVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+.+|++|+|+|+.+....+.. .++..+.. .++|+|+|+||+|+....... .++...+....+ +
T Consensus 70 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~-------~ 138 (165)
T cd04146 70 RWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVS----TEEGEKLASELG-------C 138 (165)
T ss_pred HhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCccC----HHHHHHHHHHcC-------C
Confidence 999999999999876544433 33333332 378999999999984322111 111222222222 4
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|++++||++|. .|++++|+.+.+.+
T Consensus 139 ~~~e~Sa~~~~-------------~~v~~~f~~l~~~~ 163 (165)
T cd04146 139 LFFEVSAAEDY-------------DGVHSVFHELCREV 163 (165)
T ss_pred EEEEeCCCCCc-------------hhHHHHHHHHHHHH
Confidence 69999999983 18999999998754
No 178
>smart00838 EFG_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.
Probab=99.69 E-value=1.9e-17 Score=141.50 Aligned_cols=77 Identities=26% Similarity=0.269 Sum_probs=73.0
Q ss_pred eeecceeEEEEE----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeeccee
Q 006068 457 KLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYE 530 (662)
Q Consensus 457 ~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~ 530 (662)
++|||++++|.| .|.|+++|++|||++ .+++ +++++|+|.+|+++++||+++|+++|+|+|+|++.|+||+
T Consensus 1 llEPi~~~~I~~p~~~~g~v~~~l~~rrG~i---~~~~~~~~~~~i~~~iP~~~~~~~~~~Lrs~T~G~~~~~~~f~~y~ 77 (85)
T smart00838 1 LLEPIMKVEVTVPEEYMGDVIGDLNSRRGKI---EGMEQRGGAQVIKAKVPLSEMFGYATDLRSATQGRATWSMEFSHYE 77 (85)
T ss_pred CcCCEEEEEEEeCHHHHHHHHHHHHHcCCEE---ECeeccCCcEEEEEECCHHHHhchHHHHHHhcCCeEEEEEEeCcce
Confidence 489999999999 999999999999999 9888 5789999999999999999999999999999999999999
Q ss_pred eccCCC
Q 006068 531 KHRGLL 536 (662)
Q Consensus 531 ~~~g~~ 536 (662)
|+++++
T Consensus 78 ~~~~~~ 83 (85)
T smart00838 78 EVPKSI 83 (85)
T ss_pred ECChhh
Confidence 998654
No 179
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=3.6e-16 Score=154.11 Aligned_cols=159 Identities=21% Similarity=0.216 Sum_probs=107.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCC-CCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGAD-IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~-~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
+|+++|..|+|||||+++|+...... ....+ .+.+.......+......++||||||+.+|.......+
T Consensus 2 Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t----------~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 71 (191)
T cd04112 2 KVMLLGDSGVGKTCLLVRFKDGAFLNGNFIAT----------VGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYY 71 (191)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCccCcCCc----------ccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHc
Confidence 79999999999999999998763321 11111 12222222222322346899999999999988888899
Q ss_pred hhcceEEEEeeCCCCchhh-HHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
+.+|++|+|+|+.+....+ ...++..+.+. ++|+++|+||+|+...+... .++...+....+ +|+
T Consensus 72 ~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~~----~~~~~~l~~~~~-------~~~ 140 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVK----REDGERLAKEYG-------VPF 140 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhccccC----HHHHHHHHHHcC-------CeE
Confidence 9999999999998754332 23344444443 67899999999985322111 112222322222 579
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
+++||++|. |++++++.|.+.++..
T Consensus 141 ~e~Sa~~~~--------------~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 141 METSAKTGL--------------NVELAFTAVAKELKHR 165 (191)
T ss_pred EEEeCCCCC--------------CHHHHHHHHHHHHHHh
Confidence 999999998 9999999999887543
No 180
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.69 E-value=1.9e-16 Score=175.71 Aligned_cols=149 Identities=24% Similarity=0.260 Sum_probs=115.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHH---
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV--- 136 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev--- 136 (662)
..+|+++|++|+|||||+++|+... ........|.|.+.....+.+++..++||||||+.++...+
T Consensus 215 ~~kV~ivG~~nvGKSSLln~L~~~~-----------~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~~~ie~~ 283 (449)
T PRK05291 215 GLKVVIAGRPNVGKSSLLNALLGEE-----------RAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETDDEVEKI 283 (449)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC-----------CcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCccHHHHH
Confidence 3589999999999999999999752 11223346778777777888899999999999998765432
Q ss_pred -----HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 -----ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 -----~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+..+|++++|+|+.++...+...+|.. ..+.|+++|+||+|+..... .. . .
T Consensus 284 gi~~~~~~~~~aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~-----~~-------~-------~ 342 (449)
T PRK05291 284 GIERSREAIEEADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEID-----LE-------E-------E 342 (449)
T ss_pred HHHHHHHHHHhCCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccch-----hh-------h-------c
Confidence 346788999999999988876666666665 45789999999999954321 10 0 1
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
...+++++||++|. |+++|+++|.+.++.
T Consensus 343 ~~~~~i~iSAktg~--------------GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 343 NGKPVIRISAKTGE--------------GIDELREAIKELAFG 371 (449)
T ss_pred cCCceEEEEeeCCC--------------CHHHHHHHHHHHHhh
Confidence 12468999999998 999999999988753
No 181
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.69 E-value=5.7e-16 Score=151.53 Aligned_cols=155 Identities=18% Similarity=0.219 Sum_probs=107.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|..++|||||+.+|...... ......|.+ ...+.+++..++||||||+..|...+..+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~-----------~~~pt~g~~----~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~ 81 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIV-----------TTIPTIGFN----VETVEYKNISFTVWDVGGQDKIRPLWRHY 81 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCc-----------cccCCccee----EEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 468999999999999999999754211 011111222 23466788999999999999999888999
Q ss_pred HhhcceEEEEeeCCCCchh-hHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Q 006068 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~-~~~~ 213 (662)
++.+|++|+|+|+.+.... .....+..... .+.|++||+||+|+++... .+++.+ .++... ....
T Consensus 82 ~~~a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~---~l~l~~~~~~~ 152 (181)
T PLN00223 82 FQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMN------AAEITD---KLGLHSLRQRH 152 (181)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCCC------HHHHHH---HhCccccCCCc
Confidence 9999999999998864322 22223333321 3689999999999865432 112222 223221 1123
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+.++++||++|. |+++++++|.+.+
T Consensus 153 ~~~~~~Sa~~g~--------------gv~e~~~~l~~~~ 177 (181)
T PLN00223 153 WYIQSTCATSGE--------------GLYEGLDWLSNNI 177 (181)
T ss_pred eEEEeccCCCCC--------------CHHHHHHHHHHHH
Confidence 456789999999 9999999998765
No 182
>PLN03110 Rab GTPase; Provisional
Probab=99.69 E-value=5e-16 Score=156.28 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=111.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
+...+|+++|+.|+|||||+++|+......... ...|.+.......+......++||||||+..|.....
T Consensus 10 ~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~----------~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~ 79 (216)
T PLN03110 10 DYLFKIVLIGDSGVGKSNILSRFTRNEFCLESK----------STIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITS 79 (216)
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcCCCCCCCC----------CceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHH
Confidence 346799999999999999999998763211111 1112332223333333346899999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+|++|+|+|..+....+.. .|+..+.. .++|+++|+||+|+....... .+ +...+.... .
T Consensus 80 ~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~-~~---~~~~l~~~~-------~ 148 (216)
T PLN03110 80 AYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVA-EE---DGQALAEKE-------G 148 (216)
T ss_pred HHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhcccccCCC-HH---HHHHHHHHc-------C
Confidence 999999999999998765444333 44455544 368999999999985422110 11 111222221 3
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+|++++||++|. |++++++.|.+.+..
T Consensus 149 ~~~~e~SA~~g~--------------~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 149 LSFLETSALEAT--------------NVEKAFQTILLEIYH 175 (216)
T ss_pred CEEEEEeCCCCC--------------CHHHHHHHHHHHHHH
Confidence 679999999999 999999999887754
No 183
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.69 E-value=3.8e-16 Score=154.86 Aligned_cols=156 Identities=14% Similarity=0.115 Sum_probs=105.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~~~ 139 (662)
+|+++|+.|+|||||+++|+..........+. .......+.+.+ ..++||||||+.+|......+
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~-------------~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~ 67 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTV-------------EEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLS 67 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccCCCch-------------hhheeEEEEECCEEEEEEEEECCCchhhhHHHHHH
Confidence 48999999999999999998764321111111 111222344444 689999999999998888889
Q ss_pred HhhcceEEEEeeCCCCchhhHH-HHHHHHHH----cCCCcEEEeccCCCCCC-CHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 140 VGMVEGAILVVDAGEGPLAQTK-FVLAKALK----YGLRPILLLNKVDRPAV-SEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~----~~lp~IvviNKiD~~~~-~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+..+|++|+|+|+.+....+.. .++..+.+ .++|+|+|+||+|+... ...... +....+.. ...
T Consensus 68 ~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~v~~~----~~~~~~~~------~~~ 137 (198)
T cd04147 68 IQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAK----DALSTVEL------DWN 137 (198)
T ss_pred hhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccccccccHH----HHHHHHHh------hcC
Confidence 9999999999999875433322 23233332 47899999999998542 111111 11111110 112
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++++||++|. |+++++++|.+.+..
T Consensus 138 ~~~~~~Sa~~g~--------------gv~~l~~~l~~~~~~ 164 (198)
T cd04147 138 CGFVETSAKDNE--------------NVLEVFKELLRQANL 164 (198)
T ss_pred CcEEEecCCCCC--------------CHHHHHHHHHHHhhc
Confidence 468999999999 999999999988754
No 184
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.69 E-value=5.6e-16 Score=151.73 Aligned_cols=160 Identities=16% Similarity=0.191 Sum_probs=108.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..++|||||+.+++.......+..+ -|..+..+...+......++||||+|+..|......+++
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T----------~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~ 71 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDEDYIQT----------LGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCN 71 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCc----------cceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCc
Confidence 6999999999999999999987433222111 133332222233223468999999999999988888999
Q ss_pred hcceEEEEeeCCCCchhhHH-HHHHHHHHc---CCCcEEEeccCCCCCCC-HHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGPLAQTK-FVLAKALKY---GLRPILLLNKVDRPAVS-EERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~-~~l~~~~~~---~lp~IvviNKiD~~~~~-~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++++|+|..+....+.. .++..+... ..| |+|+||+|+.... ......+.++..++....+ +++
T Consensus 72 ~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~-------~~~ 143 (182)
T cd04128 72 DAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMK-------APL 143 (182)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhccccccchhhhhhHHHHHHHHHHcC-------CEE
Confidence 99999999998875443332 445555442 345 7889999985321 1111122333334433333 468
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++||++|. |++++|+.+.+.+.
T Consensus 144 ~e~SAk~g~--------------~v~~lf~~l~~~l~ 166 (182)
T cd04128 144 IFCSTSHSI--------------NVQKIFKIVLAKAF 166 (182)
T ss_pred EEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 999999998 99999999987764
No 185
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=6.6e-16 Score=151.39 Aligned_cols=160 Identities=21% Similarity=0.198 Sum_probs=107.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|..|+|||||+++|....... ... |.......+.+++.++++|||||+..+......
T Consensus 16 ~~~~i~ivG~~~~GKTsli~~l~~~~~~~-----------~~~----t~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~ 80 (184)
T smart00178 16 KHAKILFLGLDNAGKTTLLHMLKNDRLAQ-----------HQP----TQHPTSEELAIGNIKFTTFDLGGHQQARRLWKD 80 (184)
T ss_pred ccCEEEEECCCCCCHHHHHHHHhcCCCcc-----------cCC----ccccceEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 34789999999999999999998652110 011 112223345667899999999999999888889
Q ss_pred HHhhcceEEEEeeCCCCc-hhhHHHHHHHHH----HcCCCcEEEeccCCCCCC-CHHHHHHHHHHHHHHHHhcCC--CCc
Q 006068 139 VVGMVEGAILVVDAGEGP-LAQTKFVLAKAL----KYGLRPILLLNKVDRPAV-SEERCDEVESLVFDLFANLGA--TDE 210 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~----~~~lp~IvviNKiD~~~~-~~~~~~ei~~~v~~l~~~~g~--~~~ 210 (662)
++..+|++|+|+|+.+.. .......+..+. ..+.|+++|+||+|++.. +. .++.+.+ ++...... ...
T Consensus 81 ~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~---~~i~~~l-~l~~~~~~~~~~~ 156 (184)
T smart00178 81 YFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASE---DELRYAL-GLTNTTGSKGKVG 156 (184)
T ss_pred HhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCCCH---HHHHHHc-CCCcccccccccC
Confidence 999999999999987643 223333343332 257899999999998643 22 2222211 11000000 000
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
...+-++++||++|. |+++++++|.++
T Consensus 157 ~~~~~i~~~Sa~~~~--------------g~~~~~~wl~~~ 183 (184)
T smart00178 157 VRPLEVFMCSVVRRM--------------GYGEGFKWLSQY 183 (184)
T ss_pred CceeEEEEeecccCC--------------ChHHHHHHHHhh
Confidence 112348999999998 999999999765
No 186
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.69 E-value=5.7e-16 Score=154.06 Aligned_cols=152 Identities=23% Similarity=0.222 Sum_probs=101.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCe-eEEEEeCCCCccc-hHH-
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHADF-GGE- 135 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~-~iniIDTPGh~dF-~~e- 135 (662)
..++|+|+|++|+|||||+++|+..... .....+.|+......+.+.+. .++||||||+.+. ...
T Consensus 40 ~~~~I~iiG~~g~GKStLl~~l~~~~~~------------~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 107 (204)
T cd01878 40 GIPTVALVGYTNAGKSTLFNALTGADVY------------AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLPHQL 107 (204)
T ss_pred CCCeEEEECCCCCCHHHHHHHHhcchhc------------cCCccceeccceeEEEEecCCceEEEeCCCccccCCCHHH
Confidence 4679999999999999999999876311 111123444444455556554 8999999998542 111
Q ss_pred ------HHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006068 136 ------VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (662)
Q Consensus 136 ------v~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~ 205 (662)
....+..+|++++|+|+.++...... .+...... .+.|+++|+||+|+..... .. ..+..
T Consensus 108 ~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~-----~~----~~~~~- 177 (204)
T cd01878 108 VEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE-----LE----ERLEA- 177 (204)
T ss_pred HHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH-----HH----HHhhc-
Confidence 12235679999999999887554433 33333333 3679999999999954322 11 11111
Q ss_pred CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
...|++++||++|. |++++++.|.+.+
T Consensus 178 ------~~~~~~~~Sa~~~~--------------gi~~l~~~L~~~~ 204 (204)
T cd01878 178 ------GRPDAVFISAKTGE--------------GLDELLEAIEELL 204 (204)
T ss_pred ------CCCceEEEEcCCCC--------------CHHHHHHHHHhhC
Confidence 13579999999998 9999999987654
No 187
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.69 E-value=5.6e-16 Score=145.76 Aligned_cols=151 Identities=24% Similarity=0.284 Sum_probs=104.6
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhh
Q 006068 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGM 142 (662)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~ 142 (662)
|+|+|+.|+|||||+++|......... .+ |+......+.+.+..+.+|||||+..|...+..++..
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~------------~~--t~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~ 67 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT------------IP--TVGFNMRKVTKGNVTLKVWDLGGQPRFRSMWERYCRG 67 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc------------cC--CCCcceEEEEECCEEEEEEECCCCHhHHHHHHHHHhc
Confidence 799999999999999999876322111 11 1112223345667889999999999999999999999
Q ss_pred cceEEEEeeCCCCc-hhhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cCCCccE
Q 006068 143 VEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLDFPV 216 (662)
Q Consensus 143 aD~aIlVVDa~~G~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~-~~~~~Pv 216 (662)
+|++++|+|+.+.. ..+...++..+.. .++|+++|+||+|..+... ..++. ..+ +... ....+++
T Consensus 68 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~----~~~---~~~~~~~~~~~~ 138 (159)
T cd04159 68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALS--VDELI----EQM---NLKSITDREVSC 138 (159)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCcC--HHHHH----HHh---CcccccCCceEE
Confidence 99999999987642 2333344444432 4789999999999865322 11111 111 1110 1123679
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+++||++|. |+++++++|.+
T Consensus 139 ~~~Sa~~~~--------------gi~~l~~~l~~ 158 (159)
T cd04159 139 YSISCKEKT--------------NIDIVLDWLIK 158 (159)
T ss_pred EEEEeccCC--------------ChHHHHHHHhh
Confidence 999999998 99999999865
No 188
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.68 E-value=4.3e-16 Score=153.39 Aligned_cols=161 Identities=17% Similarity=0.143 Sum_probs=106.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+|+|++++|||||+++|+....... +.....|.+.......+......++||||||+.+|.......++
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~~~---------~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 72 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFLVG---------PYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYR 72 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcCCc---------CcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcC
Confidence 799999999999999999997633210 01111122222222333323356789999999998887778888
Q ss_pred hcceEEEEeeCCCCchhhH-HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEE
Q 006068 142 MVEGAILVVDAGEGPLAQT-KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~ 218 (662)
.+|++|+|+|..+....+. ..++..+... +.|+++|+||+|+.........-..+++..+....+ +++++
T Consensus 73 ~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~-------~~~~~ 145 (193)
T cd04118 73 GAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIK-------AQHFE 145 (193)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHcC-------CeEEE
Confidence 9999999999877543332 3455555544 689999999999854221000001122333333322 46899
Q ss_pred cccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+||++|. |+++|++.|.+.+
T Consensus 146 ~Sa~~~~--------------gv~~l~~~i~~~~ 165 (193)
T cd04118 146 TSSKTGQ--------------NVDELFQKVAEDF 165 (193)
T ss_pred EeCCCCC--------------CHHHHHHHHHHHH
Confidence 9999998 9999999998765
No 189
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.68 E-value=3.6e-16 Score=151.87 Aligned_cols=160 Identities=16% Similarity=0.100 Sum_probs=106.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|..|+|||||+.+++.......+..++.+. ......+..+...++||||||+.+|......++
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~-----------~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-----------YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSY 70 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceee-----------eEEEEEECCEEEEEEEEECCCchhhhhhhhhhc
Confidence 379999999999999999999764433332222111 111122233346789999999999988888889
Q ss_pred hhcceEEEEeeCCCCchhhHH-H-HHHHHHHc--CCCcEEEeccCCCCCCCH--HHHHH------HHHHHHHHHHhcCCC
Q 006068 141 GMVEGAILVVDAGEGPLAQTK-F-VLAKALKY--GLRPILLLNKVDRPAVSE--ERCDE------VESLVFDLFANLGAT 208 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~-~-~l~~~~~~--~lp~IvviNKiD~~~~~~--~~~~e------i~~~v~~l~~~~g~~ 208 (662)
+.+|++|+|+|..+....+.. . |+..+... ++|+|+|.||+|+..... +...+ ..++..++...++.
T Consensus 71 ~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 149 (174)
T cd01871 71 PQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGA- 149 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCC-
Confidence 999999999999875544443 2 33434332 689999999999854211 00000 01122233333332
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
++++++||++|. |++++|+.+.+.
T Consensus 150 -----~~~~e~Sa~~~~--------------~i~~~f~~l~~~ 173 (174)
T cd01871 150 -----VKYLECSALTQK--------------GLKTVFDEAIRA 173 (174)
T ss_pred -----cEEEEecccccC--------------CHHHHHHHHHHh
Confidence 468999999998 999999998764
No 190
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.68 E-value=6.4e-16 Score=148.58 Aligned_cols=159 Identities=19% Similarity=0.266 Sum_probs=106.1
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhh
Q 006068 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGM 142 (662)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~ 142 (662)
|+++|+.|+|||||+++|+..........++ |. ....+.+++.++.||||||+.+|...+..+++.
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~----------g~----~~~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ 67 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESVVPTT----------GF----NSVAIPTQDAIMELLEIGGSQNLRKYWKRYLSG 67 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccccccC----------Cc----ceEEEeeCCeEEEEEECCCCcchhHHHHHHHhh
Confidence 7899999999999999998763321111111 11 224456778999999999999999999999999
Q ss_pred cceEEEEeeCCCCch-hhHHHHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEc
Q 006068 143 VEGAILVVDAGEGPL-AQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYA 219 (662)
Q Consensus 143 aD~aIlVVDa~~G~~-~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~ 219 (662)
+|++|+|+|+.+... ...+.++..+.. .++|+++|+||+|+..... ..++. +.+....+. ....++++++
T Consensus 68 ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~----~~~~~~~~~-~~~~~~~~~~ 140 (164)
T cd04162 68 SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS--VQEIH----KELELEPIA-RGRRWILQGT 140 (164)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC--HHHHH----HHhCChhhc-CCCceEEEEe
Confidence 999999999877542 233344444432 4789999999999865432 11111 111100111 1224678889
Q ss_pred ccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 220 SAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 220 SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
||++.. +.....|++++|+.+++
T Consensus 141 Sa~~~~--------s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 141 SLDDDG--------SPSRMEAVKDLLSQLIN 163 (164)
T ss_pred eecCCC--------ChhHHHHHHHHHHHHhc
Confidence 998843 22223399999998764
No 191
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.68 E-value=1e-15 Score=151.04 Aligned_cols=164 Identities=15% Similarity=0.083 Sum_probs=110.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|..++|||||+.+++..........++.+. . .....+..+.+.++||||||+..|......++
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~----------~-~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~ 72 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDN----------Y-SAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSY 72 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEee----------e-EEEEEECCEEEEEEEEECCCchhhhhhhhhhc
Confidence 589999999999999999999864433322222111 1 11112333347899999999999998888899
Q ss_pred hhcceEEEEeeCCCCchhhHHH-HH-HHHHH--cCCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHhcCC
Q 006068 141 GMVEGAILVVDAGEGPLAQTKF-VL-AKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLGA 207 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~~-~l-~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~~g~ 207 (662)
+.+|++|+|+|.++....+... .| ..+.. .++|+++|.||.|+.+.... ..++ .++...+....+
T Consensus 73 ~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~-~~~~~~~~~~~v~~~~~~~~a~~~~- 150 (191)
T cd01875 73 PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADT-LKKLKEQGQAPITPQQGGALAKQIH- 150 (191)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhh-HHHHhhccCCCCCHHHHHHHHHHcC-
Confidence 9999999999988765544442 33 33332 37899999999998543211 0111 012222222222
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
.++++++||++|. |++++|+.+.+.+-.|.
T Consensus 151 -----~~~~~e~SAk~g~--------------~v~e~f~~l~~~~~~~~ 180 (191)
T cd01875 151 -----AVKYLECSALNQD--------------GVKEVFAEAVRAVLNPT 180 (191)
T ss_pred -----CcEEEEeCCCCCC--------------CHHHHHHHHHHHHhccc
Confidence 1479999999999 99999999998775553
No 192
>PLN03108 Rab family protein; Provisional
Probab=99.68 E-value=8.3e-16 Score=153.99 Aligned_cols=159 Identities=18% Similarity=0.148 Sum_probs=108.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+|+|+.|+|||||+++|+.......... .-+.+.......+......+++|||||+.+|......
T Consensus 5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~----------ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~ 74 (210)
T PLN03108 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDL----------TIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRS 74 (210)
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCC----------CccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHH
Confidence 457999999999999999999987633211111 1122222222333323457899999999999888889
Q ss_pred HHhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
.++.+|++|+|+|+.+....+.. .++..+.. .++|+++++||+|+....... .++...+.... .+
T Consensus 75 ~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~~----~~~~~~~~~~~-------~~ 143 (210)
T PLN03108 75 YYRGAAGALLVYDITRRETFNHLASWLEDARQHANANMTIMLIGNKCDLAHRRAVS----TEEGEQFAKEH-------GL 143 (210)
T ss_pred HhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccCCC----HHHHHHHHHHc-------CC
Confidence 99999999999998875443333 34443333 368899999999986432211 11222233332 25
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|++++||+++. |++++|+.+++.+
T Consensus 144 ~~~e~Sa~~~~--------------~v~e~f~~l~~~~ 167 (210)
T PLN03108 144 IFMEASAKTAQ--------------NVEEAFIKTAAKI 167 (210)
T ss_pred EEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 79999999998 9999998887665
No 193
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.68 E-value=3.2e-16 Score=152.61 Aligned_cols=163 Identities=15% Similarity=0.060 Sum_probs=111.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|+.++|||||+.+++..........++.+. . .....+.....+++||||+|+.+|......++
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~----------~-~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~ 70 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN----------F-SANVSVDGNTVNLGLWDTAGQEDYNRLRPLSY 70 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceee----------e-EEEEEECCEEEEEEEEECCCCccccccchhhc
Confidence 479999999999999999999775433333333211 1 11122222347899999999999998888899
Q ss_pred hhcceEEEEeeCCCCchhhHH--HHHHHHHH--cCCCcEEEeccCCCCCCCHHH------HHHHHHHHHHHHHhcCCCCc
Q 006068 141 GMVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEER------CDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~------~~ei~~~v~~l~~~~g~~~~ 210 (662)
+.+|++|||+|.++....+.. .|+..+.. .++|+|+|.||+|+.+..... ..-..++...+....+.
T Consensus 71 ~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~--- 147 (176)
T cd04133 71 RGADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGA--- 147 (176)
T ss_pred CCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCC---
Confidence 999999999998876555443 45555543 368899999999985421100 00012233333333332
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.+++++||++|. |++++|+.+.+.+-.
T Consensus 148 ---~~~~E~SAk~~~--------------nV~~~F~~~~~~~~~ 174 (176)
T cd04133 148 ---AAYIECSSKTQQ--------------NVKAVFDAAIKVVLQ 174 (176)
T ss_pred ---CEEEECCCCccc--------------CHHHHHHHHHHHHhc
Confidence 258999999999 999999999886533
No 194
>cd04097 mtEFG1_C mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals (desig
Probab=99.68 E-value=4.1e-17 Score=137.07 Aligned_cols=72 Identities=22% Similarity=0.240 Sum_probs=69.5
Q ss_pred ecceeEEEEE----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeec
Q 006068 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (662)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (662)
|||++++|.| +|+|+++|++|||++ .+++ +++++|+|.+|+++++||+++|+++|+|+|+|+++|+||+|+
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i---~~~~~~~~~~~i~~~~P~~e~~g~~~~Lr~~T~G~~~~~~~f~~y~~~ 77 (78)
T cd04097 1 EPIMKVEVTAPTEFQGNVIGLLNKRKGTI---VDTDTGEDEFTLEAEVPLNDMFGYSTELRSMTQGKGEFSMEFSRYAPV 77 (78)
T ss_pred CCEEEEEEEecHHHHHHHHHHHHHCCCEE---eceEecCCeEEEEEEECHHHhhChHHHHHhhCCCcEEEEEEecceEEC
Confidence 8999999999 999999999999999 9988 578999999999999999999999999999999999999998
Q ss_pred c
Q 006068 533 R 533 (662)
Q Consensus 533 ~ 533 (662)
|
T Consensus 78 ~ 78 (78)
T cd04097 78 P 78 (78)
T ss_pred c
Confidence 5
No 195
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.68 E-value=7.5e-16 Score=164.30 Aligned_cols=160 Identities=21% Similarity=0.208 Sum_probs=113.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCcc-----
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHAD----- 131 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~d----- 131 (662)
.-+..|+|+|.+|+|||||+++|.... .......+.|+......+.+ ++..++||||||..+
T Consensus 156 k~~adVglVG~PNaGKSTLln~ls~a~------------~~va~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~ 223 (335)
T PRK12299 156 KLLADVGLVGLPNAGKSTLISAVSAAK------------PKIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEG 223 (335)
T ss_pred cccCCEEEEcCCCCCHHHHHHHHHcCC------------CccCCCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCcc
Confidence 346789999999999999999998651 11223346788877777887 557899999999753
Q ss_pred --chHHHHHHHhhcceEEEEeeCCCCc-hhhHHHHHHHHHH-----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH
Q 006068 132 --FGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (662)
Q Consensus 132 --F~~ev~~~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~ 203 (662)
+.....+.+..+|++|+|+|+.+.. ..+-..+...+.. .+.|+++|+||+|+.+.... . .+.....+.
T Consensus 224 ~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~--~--~~~~~~~~~ 299 (335)
T PRK12299 224 AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEE--R--EKRAALELA 299 (335)
T ss_pred ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhH--H--HHHHHHHHH
Confidence 4456677788899999999987643 3333344444544 36799999999998643221 1 111111122
Q ss_pred hcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.. .++++++||+++. |+++|+++|.+.++.
T Consensus 300 ~~-------~~~i~~iSAktg~--------------GI~eL~~~L~~~l~~ 329 (335)
T PRK12299 300 AL-------GGPVFLISAVTGE--------------GLDELLRALWELLEE 329 (335)
T ss_pred hc-------CCCEEEEEcCCCC--------------CHHHHHHHHHHHHHh
Confidence 21 2579999999998 999999999888754
No 196
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=9.8e-16 Score=148.19 Aligned_cols=163 Identities=20% Similarity=0.175 Sum_probs=122.5
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
..+...+|.++|.+++|||+|+.++...++......++ ||....+...+.....++++|||.|+..|...
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTi----------GIDFk~kti~l~g~~i~lQiWDtaGQerf~ti 77 (207)
T KOG0078|consen 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTI----------GIDFKIKTIELDGKKIKLQIWDTAGQERFRTI 77 (207)
T ss_pred CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceE----------EEEEEEEEEEeCCeEEEEEEEEcccchhHHHH
Confidence 44568899999999999999999999887654444333 66666666666666788999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCch-hhHHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+++.|++++||+|.+.... .....|++...++ ++|.++|.||+|+...+... .++-..+..++|
T Consensus 78 ~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~----~e~ge~lA~e~G----- 148 (207)
T KOG0078|consen 78 TTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVS----KERGEALAREYG----- 148 (207)
T ss_pred HHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCCCcEEEeecccccccccccc----HHHHHHHHHHhC-----
Confidence 9999999999999999765543 4444555555554 67899999999996522211 122233444455
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |+++.|-.+.+.+-
T Consensus 149 --~~F~EtSAk~~~--------------NI~eaF~~La~~i~ 174 (207)
T KOG0078|consen 149 --IKFFETSAKTNF--------------NIEEAFLSLARDIL 174 (207)
T ss_pred --CeEEEccccCCC--------------CHHHHHHHHHHHHH
Confidence 469999999999 88888877776654
No 197
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.68 E-value=5.1e-16 Score=151.99 Aligned_cols=159 Identities=18% Similarity=0.078 Sum_probs=104.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe---cCeeEEEEeCCCCccchHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW---RENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~---~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+|+++|..|+|||||+++|+..........++ +... ...+.. ....+.||||||+.+|......
T Consensus 2 ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~----------~~~~---~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 68 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTV----------FENY---VTNIQGPNGKIIELALWDTAGQEEYDRLRPL 68 (187)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCCCCCee----------eeee---EEEEEecCCcEEEEEEEECCCchhHHHHHHH
Confidence 79999999999999999999764322211111 1111 111222 2357899999999999888778
Q ss_pred HHhhcceEEEEeeCCCCchhhHH-H-HHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK-F-VLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~-~-~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
.++.+|++|+|+|+.+....+.. . ++..... .++|+|+|+||+|+.............+..++....+. .
T Consensus 69 ~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~------~ 142 (187)
T cd04132 69 SYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGA------F 142 (187)
T ss_pred hCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCC------c
Confidence 88999999999999875544433 2 3333332 36899999999998543210000011222333333332 2
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++++||++|. |++++|+.+.+.+.
T Consensus 143 ~~~e~Sa~~~~--------------~v~~~f~~l~~~~~ 167 (187)
T cd04132 143 AYLECSAKTME--------------NVEEVFDTAIEEAL 167 (187)
T ss_pred EEEEccCCCCC--------------CHHHHHHHHHHHHH
Confidence 68999999998 99999999887654
No 198
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=1.3e-15 Score=142.46 Aligned_cols=155 Identities=26% Similarity=0.290 Sum_probs=110.6
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-CeeEEEEeCCCCccch-------HHH
Q 006068 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHADFG-------GEV 136 (662)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-~~~iniIDTPGh~dF~-------~ev 136 (662)
|+|++|+|||||+++|+..... ......+.|.......+.+. ...+++|||||+.++. ...
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~ 69 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVA-----------IVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA 69 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcccc-----------ccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH
Confidence 5899999999999999875221 12333455555555555554 7899999999988765 344
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
...++.+|++++|+|+..........++......+.|+++|+||+|+...+. ..+..+ ..... .. .....|+
T Consensus 70 ~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~~--~~~~~~-~~~~~-~~----~~~~~~~ 141 (163)
T cd00880 70 RRVLERADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEE--EEELLE-LRLLI-LL----LLLGLPV 141 (163)
T ss_pred HHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChhh--HHHHHH-HHHhh-cc----cccCCce
Confidence 5678999999999999998777777667777788999999999999864322 111111 00001 11 1113689
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+++||+++. |++++++++.+.+
T Consensus 142 ~~~sa~~~~--------------~v~~l~~~l~~~~ 163 (163)
T cd00880 142 IAVSALTGE--------------GIDELREALIEAL 163 (163)
T ss_pred EEEeeeccC--------------CHHHHHHHHHhhC
Confidence 999999998 9999999987653
No 199
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.68 E-value=8.7e-16 Score=154.35 Aligned_cols=155 Identities=16% Similarity=0.122 Sum_probs=106.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec---CeeEEEEeCCCCccchHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~---~~~iniIDTPGh~dF~~ev~~ 138 (662)
+|+|+|.+|+|||||+++|+.......+ ...++.+.....+.+. ...++||||||+..|......
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~~------------~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~ 69 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKSY------------KQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDK 69 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC------------CCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHH
Confidence 6999999999999999999876332211 1122222222333332 478999999999999888889
Q ss_pred HHhhcceEEEEeeCCCCchhh-HHHHHHHHHHc------CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY------GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~------~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
.++.+|++|+|+|+.+....+ ...|+..+.+. +.|+++|.||+|+...+... .++...+....+
T Consensus 70 ~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~----~~~~~~~~~~~~----- 140 (215)
T cd04109 70 YIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVK----DDKHARFAQANG----- 140 (215)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccC----HHHHHHHHHHcC-----
Confidence 999999999999988753333 33444555443 34678999999985422211 112223333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++|+.|.+.+.
T Consensus 141 --~~~~~iSAktg~--------------gv~~lf~~l~~~l~ 166 (215)
T cd04109 141 --MESCLVSAKTGD--------------RVNLLFQQLAAELL 166 (215)
T ss_pred --CEEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 468999999998 99999999988764
No 200
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.67 E-value=1e-15 Score=144.80 Aligned_cols=153 Identities=19% Similarity=0.225 Sum_probs=105.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~~~ 139 (662)
+|+|+|++|+|||||+++|+..........+.. ......+.++ .+.+++||+||+.++.......
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~ 67 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-------------DSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLY 67 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-------------HeEEEEEEECCEEEEEEEEECCChHHHHHHHHHH
Confidence 589999999999999999997642221111110 1111222333 4789999999999999999999
Q ss_pred HhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+..+|++++|+|..+... .+...++..... .+.|+++|+||+|+...... ..+++..+....+ .
T Consensus 68 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----~~~~~~~~~~~~~-------~ 136 (160)
T cd00876 68 IRQGDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQV----SKEEGKALAKEWG-------C 136 (160)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccccee----cHHHHHHHHHHcC-------C
Confidence 999999999999876432 233444444433 36899999999998652211 1223333333332 5
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|++++||++|. |+++++++|.+++
T Consensus 137 ~~~~~S~~~~~--------------~i~~l~~~l~~~i 160 (160)
T cd00876 137 PFIETSAKDNI--------------NIDEVFKLLVREI 160 (160)
T ss_pred cEEEeccCCCC--------------CHHHHHHHHHhhC
Confidence 79999999998 9999999998753
No 201
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.67 E-value=7.7e-16 Score=149.68 Aligned_cols=154 Identities=19% Similarity=0.223 Sum_probs=105.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~~ 138 (662)
++|+|+|++|+|||||+++|+..........+..+ .....+.+. ++.++||||||+.+|......
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~-------------~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~ 68 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIEN-------------TFSKIIRYKGQDYHLEIVDTAGQDEYSILPQK 68 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhh-------------hEEEEEEECCEEEEEEEEECCChHhhHHHHHH
Confidence 68999999999999999999976432211111100 001122222 467899999999999988889
Q ss_pred HHhhcceEEEEeeCCCCchhhHH-HHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK-FVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
++..+|++++|+|..+....+.. .++....+ .++|+|+++||+|+...+... ..+...+...++
T Consensus 69 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~----~~~~~~~~~~~~------- 137 (180)
T cd04137 69 YSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVS----TEEGKELAESWG------- 137 (180)
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcCccC----HHHHHHHHHHcC-------
Confidence 99999999999998876544433 33444433 367999999999985422111 111222222222
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||++|. |+.++++++.+.+
T Consensus 138 ~~~~~~Sa~~~~--------------gv~~l~~~l~~~~ 162 (180)
T cd04137 138 AAFLESSARENE--------------NVEEAFELLIEEI 162 (180)
T ss_pred CeEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 479999999998 9999999998765
No 202
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.67 E-value=6.8e-16 Score=150.10 Aligned_cols=157 Identities=13% Similarity=0.047 Sum_probs=104.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~~ 138 (662)
.+|+++|..|+|||||+.+++.......+..++.+ ... ..+.+++ +.++||||||+.+|......
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~----------~~~---~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 68 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFD----------NYA---VTVMIGGEPYTLGLFDTAGQEDYDRLRPL 68 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceee----------eeE---EEEEECCEEEEEEEEECCCccchhhhhhh
Confidence 47999999999999999999976443222222211 110 1223333 68899999999999887778
Q ss_pred HHhhcceEEEEeeCCCCchhhHH-H-HHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHhc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK-F-VLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANL 205 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~-~-~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~~ 205 (662)
+++.+|++|||+|..+....+.. . |+...... ++|+|+|.||+|+..... ..... .++...+....
T Consensus 69 ~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~-~~~~l~~~~~~~v~~~~~~~~a~~~ 147 (175)
T cd01874 69 SYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPS-TIEKLAKNKQKPITPETGEKLARDL 147 (175)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChh-hHHHhhhccCCCcCHHHHHHHHHHh
Confidence 89999999999998876544433 2 43444332 689999999999854311 00000 01112222222
Q ss_pred CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
+ .++++++||++|. |++++|+.++..
T Consensus 148 ~------~~~~~e~SA~tg~--------------~v~~~f~~~~~~ 173 (175)
T cd01874 148 K------AVKYVECSALTQK--------------GLKNVFDEAILA 173 (175)
T ss_pred C------CcEEEEecCCCCC--------------CHHHHHHHHHHH
Confidence 2 2569999999999 999999998763
No 203
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.67 E-value=7e-16 Score=148.77 Aligned_cols=153 Identities=17% Similarity=0.247 Sum_probs=105.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+|+|+.|+|||||+++|...... ......|++ ...+.+.+..+++|||||+..|...+...
T Consensus 14 ~~~v~i~G~~g~GKStLl~~l~~~~~~-----------~~~~t~g~~----~~~i~~~~~~~~~~D~~G~~~~~~~~~~~ 78 (173)
T cd04155 14 EPRILILGLDNAGKTTILKQLASEDIS-----------HITPTQGFN----IKTVQSDGFKLNVWDIGGQRAIRPYWRNY 78 (173)
T ss_pred ccEEEEEccCCCCHHHHHHHHhcCCCc-----------ccCCCCCcc----eEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 568999999999999999999865211 011122332 23455678899999999999998888899
Q ss_pred HhhcceEEEEeeCCCCc-hhhHHHHHHHH----HHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC-cCCC
Q 006068 140 VGMVEGAILVVDAGEGP-LAQTKFVLAKA----LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD-EQLD 213 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~-~~qt~~~l~~~----~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~-~~~~ 213 (662)
++.+|++++|+|+.+.. .......+... ...++|+++++||+|+..... ..++. + .++... ....
T Consensus 79 ~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~--~~~i~----~---~l~~~~~~~~~ 149 (173)
T cd04155 79 FENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAP--AEEIA----E---ALNLHDLRDRT 149 (173)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCCC--HHHHH----H---HcCCcccCCCe
Confidence 99999999999987632 22233333332 345789999999999854321 12221 2 122211 1113
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
++++++||++|. |+++++++|++
T Consensus 150 ~~~~~~Sa~~~~--------------gi~~~~~~l~~ 172 (173)
T cd04155 150 WHIQACSAKTGE--------------GLQEGMNWVCK 172 (173)
T ss_pred EEEEEeECCCCC--------------CHHHHHHHHhc
Confidence 568899999999 99999999865
No 204
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.67 E-value=1.4e-15 Score=148.88 Aligned_cols=155 Identities=19% Similarity=0.221 Sum_probs=105.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|+.++|||||+.++....... .....|.. ...+.+.+..+++|||||+..|...+..+
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~~-----------~~~T~~~~----~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 81 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVVT-----------TIPTIGFN----VETVEYKNLKFTMWDVGGQDKLRPLWRHY 81 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCccc-----------cCCccccc----eEEEEECCEEEEEEECCCCHhHHHHHHHH
Confidence 3589999999999999999997542110 11111222 23455678999999999999999888999
Q ss_pred HhhcceEEEEeeCCCCc-hhhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC-CcCCC
Q 006068 140 VGMVEGAILVVDAGEGP-LAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT-DEQLD 213 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~-~~~~~ 213 (662)
++.+|++|+|+|+.+.. .......+..... .+.|++||+||.|+.+.... .++ .+ .++.. .....
T Consensus 82 ~~~ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~i----~~---~l~~~~~~~~~ 152 (182)
T PTZ00133 82 YQNTNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAMST--TEV----TE---KLGLHSVRQRN 152 (182)
T ss_pred hcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCCCH--HHH----HH---HhCCCcccCCc
Confidence 99999999999987532 2223333443322 35789999999998653221 122 11 12221 11123
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++.+||++|. |+++++++|.+.+
T Consensus 153 ~~~~~~Sa~tg~--------------gv~e~~~~l~~~i 177 (182)
T PTZ00133 153 WYIQGCCATTAQ--------------GLYEGLDWLSANI 177 (182)
T ss_pred EEEEeeeCCCCC--------------CHHHHHHHHHHHH
Confidence 567889999998 9999999998754
No 205
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=5.1e-16 Score=147.49 Aligned_cols=163 Identities=18% Similarity=0.182 Sum_probs=121.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|..++|||||+-++....+... .|..-|-....+...+.-...++.||||.|+++|.+...-+
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~----------~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMY 74 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHEN----------IEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMY 74 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccc----------cccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccce
Confidence 46899999999999999999998744322 23334555555555555456899999999999999999999
Q ss_pred HhhcceEEEEeeCCCCch-hhHHHHHHHHHHcCCC-c--EEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKALKYGLR-P--ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~~~lp-~--IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+|.|++||+|+|.++--. .+.+.|++.+.+..-| + .+|.||+|+...+... .++..++....| .+
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~----~~ea~~yAe~~g-------ll 143 (200)
T KOG0092|consen 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVE----FEEAQAYAESQG-------LL 143 (200)
T ss_pred ecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhhccccc----HHHHHHHHHhcC-------CE
Confidence 999999999999887544 4445566666665445 3 3589999996533322 233444444433 46
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA 257 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~ 257 (662)
++++||++|. |++++|..|.+.+|....
T Consensus 144 ~~ETSAKTg~--------------Nv~~if~~Ia~~lp~~~~ 171 (200)
T KOG0092|consen 144 FFETSAKTGE--------------NVNEIFQAIAEKLPCSDP 171 (200)
T ss_pred EEEEeccccc--------------CHHHHHHHHHHhccCccc
Confidence 9999999999 999999999999987654
No 206
>cd03709 lepA_C lepA_C: This family represents the C-terminal region of LepA, a GTP-binding protein localized in the cytoplasmic membrane. LepA is ubiquitous in Bacteria and Eukaryota (e.g. Saccharomyces cerevisiae GUF1p), but is missing from Archaea. LepA exhibits significant homology to elongation factors (EFs) Tu and G. The function(s) of the proteins in this family are unknown. The N-terminal domain of LepA is homologous to a domain of similar size found in initiation factor 2 (IF2), and in EF-Tu and EF-G (factors required for translation in Escherichia coli). Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including S. cerevisiae GUF1) originated within the bacterial LepA family. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.67 E-value=5.5e-17 Score=136.87 Aligned_cols=71 Identities=18% Similarity=0.164 Sum_probs=67.9
Q ss_pred ecceeEEEEE----chhHHHHhhccceEEEeecccc--C-CEEEEEEEecccccc-chhhhccccceeeEEeeeeeccee
Q 006068 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGLV-GYRSVFSSDTRGTGFMHRAFLKYE 530 (662)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~-~~~~i~~~vP~~~l~-g~~~~l~s~T~G~g~~~~~f~~y~ 530 (662)
|||++++|.| +|+||++|++|||+| .+|+ + ++++|+|.+|+++++ ||+++|+++|+|+|+|++.|+||+
T Consensus 1 EPi~~v~i~vP~e~~G~V~~~l~~rrG~i---~~~~~~~~~~~~i~~~~P~~~~~~g~~~~L~s~T~G~g~~~~~f~~y~ 77 (80)
T cd03709 1 EPFVKATIITPSEYLGAIMELCQERRGVQ---KDMEYLDANRVMLTYELPLAEIVYDFFDKLKSISKGYASLDYELIGYR 77 (80)
T ss_pred CCEEEEEEEeCHHhhHHHHHHHHHhCCEE---eccEecCCCeEEEEEECCHHHHhhhHHHHhHhhcCCEEEEEEEecccc
Confidence 8999999999 999999999999999 9998 4 599999999999995 999999999999999999999999
Q ss_pred ec
Q 006068 531 KH 532 (662)
Q Consensus 531 ~~ 532 (662)
|.
T Consensus 78 ~~ 79 (80)
T cd03709 78 ES 79 (80)
T ss_pred cC
Confidence 85
No 207
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.67 E-value=1.2e-15 Score=156.51 Aligned_cols=160 Identities=19% Similarity=0.172 Sum_probs=108.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..|+|||||+++++.......+..++.|. ..+...+..+.+.++||||+|+.+|......++.
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~-----------~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~ 70 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDF-----------HRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSIL 70 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHh-----------EEEEEEECCEEEEEEEEECCCChhhhHHHHHHhc
Confidence 69999999999999999999764332222222111 1222222233478999999999999887777889
Q ss_pred hcceEEEEeeCCCCchhhH-HHHHHHHHH------------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 142 MVEGAILVVDAGEGPLAQT-KFVLAKALK------------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt-~~~l~~~~~------------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
.+|++|+|+|..+....+. ..++..+.+ .++|+|+|+||+|+...+... .+++.+++...
T Consensus 71 ~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~----~~ei~~~~~~~--- 143 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQ----RDEVEQLVGGD--- 143 (247)
T ss_pred cCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccC----HHHHHHHHHhc---
Confidence 9999999999887543332 334444432 368999999999985422211 12233333211
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
..++++++||++|. |++++|+.|.+..-.|.
T Consensus 144 ---~~~~~~evSAktg~--------------gI~elf~~L~~~~~~p~ 174 (247)
T cd04143 144 ---ENCAYFEVSAKKNS--------------NLDEMFRALFSLAKLPN 174 (247)
T ss_pred ---CCCEEEEEeCCCCC--------------CHHHHHHHHHHHhcccc
Confidence 13569999999998 99999999998765554
No 208
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.67 E-value=5.9e-16 Score=153.79 Aligned_cols=151 Identities=19% Similarity=0.153 Sum_probs=105.3
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcce
Q 006068 66 IAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEG 145 (662)
Q Consensus 66 iGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~ 145 (662)
+|..++|||||+.+++.......+..+ -|++.......+..+..+++||||||+.+|......+++.+|+
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~~~~~~T----------ig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFEKKYVAT----------LGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCCCCCCCc----------eeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCE
Confidence 699999999999999865322111111 1333333333333345789999999999999999999999999
Q ss_pred EEEEeeCCCCchhhHHH-HHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccc
Q 006068 146 AILVVDAGEGPLAQTKF-VLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAK 222 (662)
Q Consensus 146 aIlVVDa~~G~~~qt~~-~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~ 222 (662)
+|+|+|..+....+... |+..+.+ .++|+|+|+||+|+..... . .+. .++.... .++++++||+
T Consensus 71 ~ilV~D~t~~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~~~v-~----~~~-~~~~~~~-------~~~~~e~SAk 137 (200)
T smart00176 71 AIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKV-K----AKS-ITFHRKK-------NLQYYDISAK 137 (200)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccC-C----HHH-HHHHHHc-------CCEEEEEeCC
Confidence 99999999876555443 4444554 4789999999999843211 0 111 1222222 3579999999
Q ss_pred cCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 223 EGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 223 ~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|. |+.++|+.|.+.+.
T Consensus 138 ~~~--------------~v~~~F~~l~~~i~ 154 (200)
T smart00176 138 SNY--------------NFEKPFLWLARKLI 154 (200)
T ss_pred CCC--------------CHHHHHHHHHHHHH
Confidence 999 99999999987663
No 209
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=99.67 E-value=2.9e-16 Score=133.55 Aligned_cols=83 Identities=20% Similarity=0.277 Sum_probs=76.8
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~ 342 (662)
|.++|||+.++++.|+++++||++|+|++||.|++...+ +.++|.+|+.++|.++.++++|.||||+++.|++
T Consensus 1 ~~a~VfK~~~d~~~g~i~~~Ri~sGtl~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~ 73 (83)
T cd04092 1 LCALAFKVVHDPQRGPLTFVRVYSGTLKRGSALYNTNTG-------KKERISRLLQPFADQYQEIPSLSAGNIGVITGLK 73 (83)
T ss_pred CEEEEEecccCCCCCeEEEEEEecCEECCCCEEEECCCC-------CEEEeeEEEEEECCCceECCeeCCCCEEEEECCC
Confidence 578999999999999999999999999999999987532 4578999999999999999999999999999999
Q ss_pred CCccCceeee
Q 006068 343 KPSIGHTVAN 352 (662)
Q Consensus 343 ~~~~GdTl~~ 352 (662)
++++|||||.
T Consensus 74 ~~~~Gdtl~~ 83 (83)
T cd04092 74 QTRTGDTLVT 83 (83)
T ss_pred CcccCCEEeC
Confidence 9999999984
No 210
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.67 E-value=1.2e-15 Score=162.61 Aligned_cols=157 Identities=19% Similarity=0.230 Sum_probs=109.0
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCCcc-----
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHAD----- 131 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh~d----- 131 (662)
.-+..|+|+|.+|+|||||+++|.... .........|.......+.+.+ ..++||||||+.+
T Consensus 155 k~~adV~lvG~pnaGKSTLl~~lt~~~------------~~va~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~ 222 (329)
T TIGR02729 155 KLLADVGLVGLPNAGKSTLISAVSAAK------------PKIADYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEG 222 (329)
T ss_pred eccccEEEEcCCCCCHHHHHHHHhcCC------------ccccCCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCccc
Confidence 346799999999999999999998752 1122233556666666677766 8999999999753
Q ss_pred --chHHHHHHHhhcceEEEEeeCCCC----chhhHHHHHHHHHH-----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHH
Q 006068 132 --FGGEVERVVGMVEGAILVVDAGEG----PLAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFD 200 (662)
Q Consensus 132 --F~~ev~~~l~~aD~aIlVVDa~~G----~~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~ 200 (662)
+.....+.+..+|++|+|+|+.+. +..+-..+.+++.. .+.|+++|+||+|+... ....+..+++
T Consensus 223 ~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~--~~~~~~~~~l-- 298 (329)
T TIGR02729 223 AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE--EELAELLKEL-- 298 (329)
T ss_pred ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh--HHHHHHHHHH--
Confidence 344556677789999999998753 22223333333433 36899999999999543 2222222222
Q ss_pred HHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 201 LFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 201 l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
...+ .++++++||+++. |+++|++.|.+.+
T Consensus 299 -~~~~-------~~~vi~iSAktg~--------------GI~eL~~~I~~~l 328 (329)
T TIGR02729 299 -KKAL-------GKPVFPISALTGE--------------GLDELLYALAELL 328 (329)
T ss_pred -HHHc-------CCcEEEEEccCCc--------------CHHHHHHHHHHHh
Confidence 1222 2469999999998 9999999998765
No 211
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.66 E-value=1.4e-15 Score=153.11 Aligned_cols=162 Identities=18% Similarity=0.204 Sum_probs=108.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+|+|..++|||||+++|+....... ..|+........+..+.++||||||+..|......+++
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~---------------~~Tig~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~ 66 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDT---------------VSTVGGAFYLKQWGPYNISIWDTAGREQFHGLGSMYCR 66 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC---------------CCccceEEEEEEeeEEEEEEEeCCCcccchhhHHHHhc
Confidence 799999999999999999987632110 11222223333456788999999999999988889999
Q ss_pred hcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCH---------------HHHHHHHHHHHHHH
Q 006068 142 MVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSE---------------ERCDEVESLVFDLF 202 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~---------------~~~~ei~~~v~~l~ 202 (662)
.+|++|+|+|+.+....+.. .+|..+.+ .++|+|+|.||+|+..... ....-..++...+.
T Consensus 67 ~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a 146 (220)
T cd04126 67 GAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFY 146 (220)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHH
Confidence 99999999998875443333 34554443 3578999999999854100 00000112333333
Q ss_pred HhcCCC---Cc----CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 203 ANLGAT---DE----QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 203 ~~~g~~---~~----~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
...+.. .+ ..++|++++||++|. |++++|+.+++.+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~--------------~V~elf~~i~~~~ 189 (220)
T cd04126 147 KRINKYKMLDEDLSPAAEKMCFETSAKTGY--------------NVDELFEYLFNLV 189 (220)
T ss_pred HHhCccccccccccccccceEEEeeCCCCC--------------CHHHHHHHHHHHH
Confidence 333210 00 113679999999998 9999999998665
No 212
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.66 E-value=1.1e-15 Score=147.67 Aligned_cols=158 Identities=16% Similarity=0.096 Sum_probs=104.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhh
Q 006068 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGM 142 (662)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~ 142 (662)
|+|+|..|+|||||+++++..........+..+ .......+......+.||||||+.+|.......++.
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ 69 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFE-----------NYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPD 69 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEe-----------eeeEEEEECCEEEEEEEEECCCCcccchhchhhcCC
Confidence 589999999999999999976433222111110 111111222233578999999999998888888899
Q ss_pred cceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHhcCCCC
Q 006068 143 VEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLGATD 209 (662)
Q Consensus 143 aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~~g~~~ 209 (662)
+|++|+|+|..+....+.. .++...... ++|+|+|+||+|+.... ....+. .++...+...++.
T Consensus 70 ~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~-- 146 (174)
T smart00174 70 TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDK-STLRELSKQKQEPVTYEQGEALAKRIGA-- 146 (174)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhCh-hhhhhhhcccCCCccHHHHHHHHHHcCC--
Confidence 9999999998875333322 244444433 78999999999985421 111111 1122333334332
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.+++++||++|. |++++|+.+.+.+
T Consensus 147 ----~~~~e~Sa~~~~--------------~v~~lf~~l~~~~ 171 (174)
T smart00174 147 ----VKYLECSALTQE--------------GVREVFEEAIRAA 171 (174)
T ss_pred ----cEEEEecCCCCC--------------CHHHHHHHHHHHh
Confidence 368999999999 9999999998764
No 213
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.66 E-value=1.6e-15 Score=148.45 Aligned_cols=161 Identities=13% Similarity=0.108 Sum_probs=109.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+++|..++|||||+.+++..........++.+. . .....+..+...++||||+|+..|......
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~----------~-~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~ 72 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFEN----------Y-TASFEIDTQRIELSLWDTSGSPYYDNVRPL 72 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeee----------e-EEEEEECCEEEEEEEEECCCchhhHhhhhh
Confidence 34689999999999999999999875433332332111 1 111222233468999999999999888888
Q ss_pred HHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHH---------HHHHHHHHHHHhc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCD---------EVESLVFDLFANL 205 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~---------ei~~~v~~l~~~~ 205 (662)
+++.+|++|||+|.++....+.. .|+..+.+. +.|+|+|.||+|+..... ... -..++...+...+
T Consensus 73 ~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~-~~~~~~~~~~~~v~~~~~~~~a~~~ 151 (182)
T cd04172 73 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLT-TLVELSNHRQTPVSYDQGANMAKQI 151 (182)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChh-hHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 99999999999998876554442 444555443 678999999999853110 000 0112333444444
Q ss_pred CCCCcCCCccEEEcccccCccCCccCCCCCCCccc-hHHHHHHHHhh
Q 006068 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRH 251 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g-v~~Lld~I~~~ 251 (662)
++ ++++++||++|. | ++++|+.+++.
T Consensus 152 ~~------~~~~E~SAk~~~--------------n~v~~~F~~~~~~ 178 (182)
T cd04172 152 GA------ATYIECSALQSE--------------NSVRDIFHVATLA 178 (182)
T ss_pred CC------CEEEECCcCCCC--------------CCHHHHHHHHHHH
Confidence 42 369999999998 7 99999988763
No 214
>cd03711 Tet_C Tet_C: C-terminus of ribosomal protection proteins Tet(M) and Tet(O). This domain has homology to the C terminal domains of the elongation factors EF-G and EF-2. Tet(M) and Tet(O) catalyze the release of tetracycline (Tc) from the ribosome in a GTP-dependent manner thereby mediating Tc resistance. Tcs are broad-spectrum antibiotics. Typical Tcs bind to the ribosome and inhibit the elongation phase of protein synthesis, by inhibiting the occupation of site A by aminoacyl-tRNA.
Probab=99.66 E-value=8.4e-17 Score=135.18 Aligned_cols=72 Identities=24% Similarity=0.258 Sum_probs=69.3
Q ss_pred ecceeEEEEE----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeec
Q 006068 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (662)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (662)
|||++++|+| .|+|+++|++|||++ .+++ +++++|+|.+|+++++||+++|+++|+|+|+|++.|+||+|+
T Consensus 1 EPi~~~~i~~p~~~~g~v~~~l~~rrg~i---~~~~~~~~~~~i~~~~P~~~~~g~~~~Lr~~T~G~~~~~~~f~~y~~~ 77 (78)
T cd03711 1 EPYLRFELEVPQDALGRAMSDLAKMGATF---EDPQIKGDEVTLEGTIPVATSQDYQSELPSYTHGEGVLETEFKGYRPC 77 (78)
T ss_pred CCeEEEEEEcCHHHHHHHHHHHHHcCCEe---eCcEecCCEEEEEEEECHHHHhhHHHHhHhhcCCeEEEEEEeCCeEEC
Confidence 8999999999 999999999999999 9988 589999999999999999999999999999999999999997
Q ss_pred c
Q 006068 533 R 533 (662)
Q Consensus 533 ~ 533 (662)
.
T Consensus 78 ~ 78 (78)
T cd03711 78 H 78 (78)
T ss_pred C
Confidence 3
No 215
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.66 E-value=4.7e-16 Score=145.22 Aligned_cols=136 Identities=20% Similarity=0.186 Sum_probs=92.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc----cchHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA----DFGGEVE 137 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~----dF~~ev~ 137 (662)
+|+++|++|+|||||+++|+.... . ...| ..+.+.. .+|||||+. .+.....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~------------~----~~~t-----~~~~~~~---~~iDt~G~~~~~~~~~~~~~ 57 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEI------------L----YKKT-----QAVEYND---GAIDTPGEYVENRRLYSALI 57 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCcc------------c----cccc-----eeEEEcC---eeecCchhhhhhHHHHHHHH
Confidence 799999999999999999986521 0 0011 1233333 789999973 2223333
Q ss_pred HHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
..++.+|++|+|+|+.++...++..++.. .+.|+|+|+||+|+.+... . .+++..++...+. .|++
T Consensus 58 ~~~~~ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~-~----~~~~~~~~~~~~~------~~~~ 123 (142)
T TIGR02528 58 VTAADADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEADV-D----IERAKELLETAGA------EPIF 123 (142)
T ss_pred HHhhcCCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCccc-C----HHHHHHHHHHcCC------CcEE
Confidence 45789999999999998877666544432 2459999999999854211 1 1222333333332 2689
Q ss_pred EcccccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
++||++|. |++++++.|.
T Consensus 124 ~~Sa~~~~--------------gi~~l~~~l~ 141 (142)
T TIGR02528 124 EISSVDEQ--------------GLEALVDYLN 141 (142)
T ss_pred EEecCCCC--------------CHHHHHHHHh
Confidence 99999998 9999999874
No 216
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.66 E-value=1.7e-15 Score=144.69 Aligned_cols=156 Identities=17% Similarity=0.125 Sum_probs=104.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC--CCCCccccccccccccccceeEeeeEEEEE-ecCeeEEEEeCCCCccchHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG--ADIPHERAMDSISLERERGITIASKVTGIS-WRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g--~~~~~~~v~D~~~~E~ergiTi~~~~~~~~-~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+|+++|.+++|||||+++|+.... .... ....|..+......+. .....+++|||||+..|...+..
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 71 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKNY----------LMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSN 71 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCccC----------CCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHH
Confidence 799999999999999999986421 1111 0111333322333332 23478999999999999888899
Q ss_pred HHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+++.+|++++|+|..+...... ..++...... +.|+++|+||+|+......... +...+.... .++
T Consensus 72 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~----~~~~~~~~~-------~~~ 140 (164)
T cd04101 72 YWESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDA----QAQAFAQAN-------QLK 140 (164)
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccCCCHH----HHHHHHHHc-------CCe
Confidence 9999999999999876533322 3344444443 5899999999998543211100 111111122 246
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++++.+.+.+
T Consensus 141 ~~~~Sa~~~~--------------gi~~l~~~l~~~~ 163 (164)
T cd04101 141 FFKTSALRGV--------------GYEEPFESLARAF 163 (164)
T ss_pred EEEEeCCCCC--------------ChHHHHHHHHHHh
Confidence 8999999998 9999999998754
No 217
>cd04098 eEF2_C_snRNP eEF2_C_snRNP: This family includes a C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to the C-terminal domain of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.66 E-value=8.3e-17 Score=135.75 Aligned_cols=72 Identities=21% Similarity=0.156 Sum_probs=67.8
Q ss_pred ecceeEEEEE----chhHHHHhhccceEEEeecccc--CCE--EEEEEEeccccccchhhhccccceeeEEeeeeeccee
Q 006068 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWL--WKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYE 530 (662)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~~--~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~ 530 (662)
||+++++|.| +|+|+++|++|||+| ++++ ++. .+|++.+|+++++||.++||++|+|+|.|++.|+||+
T Consensus 1 EPi~~~ei~~p~~~~g~v~~~L~~rrg~i---~~~~~~~~~~~~~i~a~vP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~ 77 (80)
T cd04098 1 EPIYEVEITCPADAVSAVYEVLSRRRGHV---IYDTPIPGTPLYEVKAFIPVIESFGFETDLRVHTQGQAFCQSVFDHWQ 77 (80)
T ss_pred CCEEEEEEEECHHHHhHHHHHHhhCCcEE---eeeeccCCCCcEEEEEECCHHHHhChHHHHHhhCCCceEEEEEeCeee
Confidence 8999999999 999999999999999 8877 333 8999999999999999999999999999999999999
Q ss_pred ecc
Q 006068 531 KHR 533 (662)
Q Consensus 531 ~~~ 533 (662)
+++
T Consensus 78 ~v~ 80 (80)
T cd04098 78 IVP 80 (80)
T ss_pred ECc
Confidence 975
No 218
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.66 E-value=1.4e-15 Score=146.02 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=103.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..|+|||||+++|+..........+..+ .......+......+++|||||+.+|.......++
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~ 70 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFD-----------NYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYP 70 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-----------eeEEEEEECCEEEEEEEEeCCCcccccccchhhcC
Confidence 7999999999999999999987432111111111 11122223344568999999999988766667778
Q ss_pred hcceEEEEeeCCCCchhhH--HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHH------H-HHHHHHHHHHhcCCCCc
Q 006068 142 MVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCD------E-VESLVFDLFANLGATDE 210 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~------e-i~~~v~~l~~~~g~~~~ 210 (662)
.+|++++|+|+.+....+. ..++...... ++|+++|+||+|+......... . ..++...+....+.
T Consensus 71 ~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--- 147 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGA--- 147 (171)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCC---
Confidence 8999999999887433222 2234444433 5899999999998654321100 0 01223333333332
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
.+++++||++|. |++++++.|.+
T Consensus 148 ---~~~~~~Sa~~~~--------------gi~~l~~~i~~ 170 (171)
T cd00157 148 ---IGYMECSALTQE--------------GVKEVFEEAIR 170 (171)
T ss_pred ---eEEEEeecCCCC--------------CHHHHHHHHhh
Confidence 369999999998 99999999865
No 219
>PF00679 EFG_C: Elongation factor G C-terminus; InterPro: IPR000640 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF2 (EF-G) is a G-protein. It brings about the translocation of peptidyl-tRNA and mRNA through a ratchet-like mechanism: the binding of GTP-EF2 to the ribosome causes a counter-clockwise rotation in the small ribosomal subunit; the hydrolysis of GTP to GDP by EF2 and the subsequent release of EF2 causes a clockwise rotation of the small subunit back to the starting position [, ]. This twisting action destabilises tRNA-ribosome interactions, freeing the tRNA to translocate along the ribosome upon GTP-hydrolysis by EF2. EF2 binding also affects the entry and exit channel openings for the mRNA, widening it when bound to enable the mRNA to translocate along the ribosome. This entry represents the C-terminal domain found in EF2 (or EF-G) of both prokaryotes and eukaryotes (also known as eEF2), as well as in some tetracycline-resistance proteins. This domain adopts a ferredoxin-like fold consisting of an alpha/beta sandwich with anti-parallel beta-sheets. It resembles the topology of domain III found in these elongation factors, with which it forms the C-terminal block, but these two domains cannot be superimposed []. This domain is often found associated with (IPR000795 from INTERPRO), which contains the signatures for the N terminus of the proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 1WDT_A 2DY1_A 3CB4_F 3DEG_C 2EFG_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y ....
Probab=99.66 E-value=4.8e-17 Score=140.19 Aligned_cols=79 Identities=32% Similarity=0.260 Sum_probs=72.7
Q ss_pred eeeecceeEEEEE----chhHHHHhhccceEEEeecccc---CCEEEEEEEeccccccchhhhccccceeeEEeeeeecc
Q 006068 456 VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLK 528 (662)
Q Consensus 456 ~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~---~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~ 528 (662)
+++|||++++|.+ +|.|+++|++|||++ .+++ ++++.|+|.+|+++++||+++|+++|+|+|.|++.|+|
T Consensus 1 ~LlEP~~~~~I~~p~~~~g~v~~~l~~r~g~i---~~~~~~~~~~~~i~~~iP~~~~~gf~~~Lr~~T~G~a~~~~~~~~ 77 (89)
T PF00679_consen 1 VLLEPIMSVEISVPEEYLGKVISDLSKRRGEI---LSMDPIGGDRVVIEAEIPVRELFGFRSELRSLTSGRASFSMEFSG 77 (89)
T ss_dssp EEEEEEEEEEEEEEGGGHHHHHHHHHHTT-EE---EEEEEESTTEEEEEEEEEGGGHTTHHHHHHHHTTTS-EEEEEEEE
T ss_pred CEECCEEEEEEEECHHHHHHHHHHhcccccEE---EechhhhhhheeEEEEEChhhhhhHHHHhhccCCCEEEEEEEECe
Confidence 4799999999999 999999999999999 8887 48999999999999999999999999999999999999
Q ss_pred eeeccCCCC
Q 006068 529 YEKHRGLLG 537 (662)
Q Consensus 529 y~~~~g~~~ 537 (662)
|+|++++..
T Consensus 78 y~~~~~~~~ 86 (89)
T PF00679_consen 78 YRPVPGDIL 86 (89)
T ss_dssp EEEESHHHH
T ss_pred eEECCCChh
Confidence 999988754
No 220
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.66 E-value=1.6e-15 Score=148.79 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=105.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..|+|||||+++|+......... ...|.+.......+..+...+.||||||+.+|...+...++
T Consensus 2 ki~v~G~~~vGKSsli~~~~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~ 71 (188)
T cd04125 2 KVVIIGDYGVGKSSLLKRFTEDEFSESTK----------STIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYR 71 (188)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCC----------CceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHcc
Confidence 79999999999999999998663321111 11133333333333333467899999999999989999999
Q ss_pred hcceEEEEeeCCCCchhhHH-HHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 142 MVEGAILVVDAGEGPLAQTK-FVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~-~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
.+|++|+|+|..+....... .++...... +.|+++++||+|+....... . .....+.... .+|++
T Consensus 72 ~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v~-~---~~~~~~~~~~-------~~~~~ 140 (188)
T cd04125 72 GAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVD-S---NIAKSFCDSL-------NIPFF 140 (188)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcccccCC-H---HHHHHHHHHc-------CCeEE
Confidence 99999999998875433332 333444432 47889999999986422111 0 1111222222 24699
Q ss_pred EcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++||++|. |++++|+.+.+.+.
T Consensus 141 evSa~~~~--------------~i~~~f~~l~~~~~ 162 (188)
T cd04125 141 ETSAKQSI--------------NVEEAFILLVKLII 162 (188)
T ss_pred EEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 99999998 99999998887764
No 221
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.66 E-value=1.3e-15 Score=168.29 Aligned_cols=150 Identities=20% Similarity=0.217 Sum_probs=110.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHH--
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV-- 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev-- 136 (662)
...+|+|+|++|+|||||+++|++... .......|+|.+.....+.++++.+++|||||+.++...+
T Consensus 202 ~g~kVvIvG~~nvGKSSLiN~L~~~~~-----------aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~~~ie~ 270 (442)
T TIGR00450 202 DGFKLAIVGSPNVGKSSLLNALLKQDR-----------AIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHADFVER 270 (442)
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC-----------cccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccchhHHHH
Confidence 346899999999999999999997621 1123346888888788888999999999999997765433
Q ss_pred ------HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 137 ------ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 137 ------~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
..+++.+|++|+|+|+.++...+.. ++..+...+.|+|+|+||+|+...+. . + +...+
T Consensus 271 ~gi~~~~~~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~~~---~----~---~~~~~----- 334 (442)
T TIGR00450 271 LGIEKSFKAIKQADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKINSL---E----F---FVSSK----- 334 (442)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCcch---h----h---hhhhc-----
Confidence 3567889999999999887665555 66667667899999999999854311 1 1 11111
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
..|++.+||+++ |++++++.+.+.+
T Consensus 335 --~~~~~~vSak~~---------------gI~~~~~~L~~~i 359 (442)
T TIGR00450 335 --VLNSSNLSAKQL---------------KIKALVDLLTQKI 359 (442)
T ss_pred --CCceEEEEEecC---------------CHHHHHHHHHHHH
Confidence 246889999973 6777777666544
No 222
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.66 E-value=1.7e-15 Score=146.27 Aligned_cols=160 Identities=14% Similarity=0.124 Sum_probs=102.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
++|+|+|+.++|||||+.+|+.......+..++.+. . .....+..+...+.||||||+.+|.......+
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~----------~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~ 70 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFEN----------Y-VADIEVDGKQVELALWDTAGQEDYDRLRPLSY 70 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccc----------e-EEEEEECCEEEEEEEEeCCCchhhhhcccccc
Confidence 589999999999999999999864432222221111 1 11122222345789999999999877666778
Q ss_pred hhcceEEEEeeCCCCchhhHH-H-HHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHhcCC
Q 006068 141 GMVEGAILVVDAGEGPLAQTK-F-VLAKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLGA 207 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~-~-~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~~g~ 207 (662)
..+|++++|+|..+....... . ++..+.. .++|+++|+||+|+...... ..++ ..+...+...++
T Consensus 71 ~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~i~~~~~~~v~~~~~~~~~~~~~- 148 (175)
T cd01870 71 PDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHT-RRELAKMKQEPVKPEEGRDMANKIG- 148 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhh-hhhhhhccCCCccHHHHHHHHHHcC-
Confidence 899999999998754322222 2 3333333 37899999999998542210 0111 011112222222
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++++++||++|. |++++|+.|.+..
T Consensus 149 -----~~~~~~~Sa~~~~--------------~v~~lf~~l~~~~ 174 (175)
T cd01870 149 -----AFGYMECSAKTKE--------------GVREVFEMATRAA 174 (175)
T ss_pred -----CcEEEEeccccCc--------------CHHHHHHHHHHHh
Confidence 2469999999998 9999999998653
No 223
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.66 E-value=1.3e-15 Score=146.77 Aligned_cols=150 Identities=22% Similarity=0.245 Sum_probs=101.6
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-CeeEEEEeCCCCcc-------chHHH
Q 006068 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHAD-------FGGEV 136 (662)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-~~~iniIDTPGh~d-------F~~ev 136 (662)
|+|++|+|||||+++|+.... ......+.|+......+.++ +..++||||||+.+ +....
T Consensus 1 iiG~~~~GKStll~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~~~~ 68 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP------------KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGLGNQF 68 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc------------cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcCCCccHHH
Confidence 589999999999999987621 22233466666666667778 89999999999743 22344
Q ss_pred HHHHhhcceEEEEeeCCCCc-------hhhHHHHHHHHHH----------cCCCcEEEeccCCCCCCCHHHHHHHHHHHH
Q 006068 137 ERVVGMVEGAILVVDAGEGP-------LAQTKFVLAKALK----------YGLRPILLLNKVDRPAVSEERCDEVESLVF 199 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~-------~~qt~~~l~~~~~----------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~ 199 (662)
...++.+|++++|+|+.+.. ..+...++..+.. .+.|+++|+||+|+..... ..+.. ..
T Consensus 69 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~--~~~~~--~~ 144 (176)
T cd01881 69 LAHIRRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEE--LEEEL--VR 144 (176)
T ss_pred HHHHhccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhH--HHHHH--HH
Confidence 56678899999999998762 2222223333321 4789999999999954322 11111 11
Q ss_pred HHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
.... ....+++++||+++. |++++++.+...
T Consensus 145 ~~~~-------~~~~~~~~~Sa~~~~--------------gl~~l~~~l~~~ 175 (176)
T cd01881 145 ELAL-------EEGAEVVPISAKTEE--------------GLDELIRAIYEL 175 (176)
T ss_pred HHhc-------CCCCCEEEEehhhhc--------------CHHHHHHHHHhh
Confidence 1111 113569999999999 999999998764
No 224
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.65 E-value=2e-15 Score=147.30 Aligned_cols=158 Identities=16% Similarity=0.149 Sum_probs=106.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..++|||||+.+++..........++.+. . .....+..+...++||||||+..|......+++
T Consensus 3 Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~----------~-~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~ 71 (178)
T cd04131 3 KIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFEN----------Y-TASFEIDEQRIELSLWDTSGSPYYDNVRPLCYP 71 (178)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEE----------E-EEEEEECCEEEEEEEEECCCchhhhhcchhhcC
Confidence 79999999999999999999775433222222111 1 111222223467999999999999888888899
Q ss_pred hcceEEEEeeCCCCchhhH--HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHH---------HHHHHHHHHHhcCCC
Q 006068 142 MVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDE---------VESLVFDLFANLGAT 208 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~e---------i~~~v~~l~~~~g~~ 208 (662)
.+|++|+|+|..+....+. ..|+..+.+. +.|+|+|.||+|+.+... ...+ ..++..++...+++
T Consensus 72 ~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~-~~~~~~~~~~~~v~~~e~~~~a~~~~~- 149 (178)
T cd04131 72 DSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLS-TLMELSHQRQAPVSYEQGCAIAKQLGA- 149 (178)
T ss_pred CCCEEEEEEECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChh-HHHHHHhcCCCCCCHHHHHHHHHHhCC-
Confidence 9999999999877654444 3455555443 678899999999853110 0000 11233334444442
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccc-hHHHHHHHHhh
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRH 251 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g-v~~Lld~I~~~ 251 (662)
.+++++||++|. + ++++|+.+++.
T Consensus 150 -----~~~~E~SA~~~~--------------~~v~~~F~~~~~~ 174 (178)
T cd04131 150 -----EIYLECSAFTSE--------------KSVRDIFHVATMA 174 (178)
T ss_pred -----CEEEECccCcCC--------------cCHHHHHHHHHHH
Confidence 268999999997 5 99999988763
No 225
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.65 E-value=1.9e-15 Score=164.24 Aligned_cols=160 Identities=18% Similarity=0.270 Sum_probs=114.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCCcc------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHAD------ 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh~d------ 131 (662)
.+-.|+|+|.+|+|||||+++|+... .......++|.......+.+.+ ..+.|+||||..+
T Consensus 158 ~iadValVG~PNaGKSTLln~Lt~~k------------~~vs~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~ 225 (390)
T PRK12298 158 LLADVGLLGLPNAGKSTFIRAVSAAK------------PKVADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGA 225 (390)
T ss_pred ccccEEEEcCCCCCHHHHHHHHhCCc------------ccccCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchh
Confidence 35689999999999999999998652 1233445777777777777765 4699999999754
Q ss_pred -chHHHHHHHhhcceEEEEeeCC----CCchhhHHHHHHHHHHc-----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHH
Q 006068 132 -FGGEVERVVGMVEGAILVVDAG----EGPLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (662)
Q Consensus 132 -F~~ev~~~l~~aD~aIlVVDa~----~G~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l 201 (662)
+.....+++..+|.+++|||+. .....+...+++.+..+ +.|.|+|+||+|+.. ..... +.+..+
T Consensus 226 ~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~--~~el~---~~l~~l 300 (390)
T PRK12298 226 GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLD--EEEAE---ERAKAI 300 (390)
T ss_pred hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCC--hHHHH---HHHHHH
Confidence 3445667889999999999976 22334444555555543 589999999999853 22222 222222
Q ss_pred HHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
...++. ..+++++||+++. |+++|++.|.+++|.
T Consensus 301 ~~~~~~-----~~~Vi~ISA~tg~--------------GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 301 VEALGW-----EGPVYLISAASGL--------------GVKELCWDLMTFIEE 334 (390)
T ss_pred HHHhCC-----CCCEEEEECCCCc--------------CHHHHHHHHHHHhhh
Confidence 222222 1358999999998 999999999998864
No 226
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=3.5e-15 Score=144.35 Aligned_cols=169 Identities=21% Similarity=0.281 Sum_probs=123.0
Q ss_pred CCCCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc-
Q 006068 52 NSTLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA- 130 (662)
Q Consensus 52 ~~~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~- 130 (662)
+..++.+...-||++|.+|+|||||+|+|+++.. -....+.+|.|....+..+.. .+.|+|.||+.
T Consensus 16 ~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~----------LArtSktPGrTq~iNff~~~~---~~~lVDlPGYGy 82 (200)
T COG0218 16 IKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKN----------LARTSKTPGRTQLINFFEVDD---ELRLVDLPGYGY 82 (200)
T ss_pred HhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcc----------eeecCCCCCccceeEEEEecC---cEEEEeCCCccc
Confidence 4455556678999999999999999999998632 134456789998887766543 39999999963
Q ss_pred ---------cchHHHHHHHh---hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHH
Q 006068 131 ---------DFGGEVERVVG---MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLV 198 (662)
Q Consensus 131 ---------dF~~ev~~~l~---~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v 198 (662)
.+...+..++. ...++++++|+.+++...++++++.+.+.++|++|++||+|....+. ....+..+
T Consensus 83 Akv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~--~~k~l~~v 160 (200)
T COG0218 83 AKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSE--RNKQLNKV 160 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhH--HHHHHHHH
Confidence 23445555554 36789999999999999999999999999999999999999965322 22223333
Q ss_pred HHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 199 FDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 199 ~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.+ .++.......+ ++..|+.++. |+++|.+.|.+++-
T Consensus 161 ~~---~l~~~~~~~~~-~~~~ss~~k~--------------Gi~~l~~~i~~~~~ 197 (200)
T COG0218 161 AE---ELKKPPPDDQW-VVLFSSLKKK--------------GIDELKAKILEWLK 197 (200)
T ss_pred HH---HhcCCCCccce-EEEEeccccc--------------CHHHHHHHHHHHhh
Confidence 32 22222211111 7888888888 99999999887653
No 227
>cd03710 BipA_TypA_C BipA_TypA_C: a C-terminal portion of BipA or TypA having homology to the C terminal domains of the elongation factors EF-G and EF-2. A member of the ribosome binding GTPase superfamily, BipA is widely distributed in bacteria and plants. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secreti
Probab=99.65 E-value=1.9e-16 Score=133.31 Aligned_cols=71 Identities=41% Similarity=0.536 Sum_probs=68.6
Q ss_pred ecceeEEEEE----chhHHHHhhccceEEEeecccc--C-CEEEEEEEeccccccchhhhccccceeeEEeeeeecceee
Q 006068 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEK 531 (662)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~ 531 (662)
|||++++|.| +|+|+++|++|||.+ .+++ + ++++|+|.+|+++++||.++|+++|+|+|+|+++|+||+|
T Consensus 1 EPi~~v~I~~P~~~~g~V~~~l~~rrg~i---~~~~~~~~~~~~i~~~~P~~~~~~~~~~Lrs~T~G~a~~~~~f~~y~~ 77 (79)
T cd03710 1 EPIEELTIDVPEEYSGAVIEKLGKRKGEM---VDMEPDGNGRTRLEFKIPSRGLIGFRSEFLTDTRGTGIMNHVFDGYEP 77 (79)
T ss_pred CCEEEEEEEeCchhhHHHHHHHHhCCCEE---EccEECCCCEEEEEEEECHHHHcCcHHHHHhhCCCeEEEEEEecccEe
Confidence 8999999999 999999999999999 9988 4 6899999999999999999999999999999999999998
Q ss_pred c
Q 006068 532 H 532 (662)
Q Consensus 532 ~ 532 (662)
+
T Consensus 78 ~ 78 (79)
T cd03710 78 Y 78 (79)
T ss_pred c
Confidence 6
No 228
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.65 E-value=4e-15 Score=142.43 Aligned_cols=153 Identities=19% Similarity=0.193 Sum_probs=103.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~~~ 139 (662)
+|+++|..++|||||+.+++........ ...+........+... ...++||||||+.+|......+
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~ 69 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH------------ISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQY 69 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC------------CCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHH
Confidence 7999999999999999999876332111 1112222222233333 3678999999999999888889
Q ss_pred HhhcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++.+|++++|+|..+....+. ..++...... ++|+++|.||+|+....... .++...+.+..+ +|
T Consensus 70 ~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v~----~~~~~~~~~~~~-------~~ 138 (161)
T cd04117 70 YRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVG----DEQGNKLAKEYG-------MD 138 (161)
T ss_pred hcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccCCC----HHHHHHHHHHcC-------CE
Confidence 999999999999876433222 2344433332 57899999999985432211 122222222222 46
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
++++||++|. |++++|+.|.+.
T Consensus 139 ~~e~Sa~~~~--------------~v~~~f~~l~~~ 160 (161)
T cd04117 139 FFETSACTNS--------------NIKESFTRLTEL 160 (161)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHhh
Confidence 8999999998 999999998764
No 229
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.64 E-value=1.9e-15 Score=162.47 Aligned_cols=150 Identities=25% Similarity=0.292 Sum_probs=103.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCC-cc-----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGH-AD----- 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh-~d----- 131 (662)
...+|+|+|++|+|||||+|+|++.. ...+...+.|++.....+.+ ++..+.||||||+ .+
T Consensus 188 ~~~~ValvG~~NvGKSSLln~L~~~~------------~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~l~~~l 255 (351)
T TIGR03156 188 DVPTVALVGYTNAGKSTLFNALTGAD------------VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRDLPHEL 255 (351)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCc------------eeeccCCccccCCEEEEEEeCCCceEEEEecCcccccCCHHH
Confidence 45789999999999999999998752 11122345666666666777 5689999999997 22
Q ss_pred ---chHHHHHHHhhcceEEEEeeCCCCchhhHHH-HHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 132 ---FGGEVERVVGMVEGAILVVDAGEGPLAQTKF-VLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 132 ---F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
|.. +...+..+|++|+|+|+.+....+... +...+.. .+.|+++|+||+|+.. ... +. .. ..
T Consensus 256 ie~f~~-tle~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~--~~~---v~----~~-~~ 324 (351)
T TIGR03156 256 VAAFRA-TLEEVREADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD--EPR---IE----RL-EE 324 (351)
T ss_pred HHHHHH-HHHHHHhCCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC--hHh---HH----HH-Hh
Confidence 221 223467899999999998765443322 2233333 3689999999999853 111 11 11 11
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+ ..+++++||++|. |+++|++.|.+.+
T Consensus 325 -~------~~~~i~iSAktg~--------------GI~eL~~~I~~~~ 351 (351)
T TIGR03156 325 -G------YPEAVFVSAKTGE--------------GLDLLLEAIAERL 351 (351)
T ss_pred -C------CCCEEEEEccCCC--------------CHHHHHHHHHhhC
Confidence 1 1358999999999 9999999987653
No 230
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.64 E-value=1.5e-15 Score=146.93 Aligned_cols=156 Identities=18% Similarity=0.093 Sum_probs=103.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|..|+|||||+.+++.......+..+..| .......+......++||||||+.+|......+++
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~-----------~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 70 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFD-----------NFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYP 70 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCCCceee-----------eeeEEEEECCEEEEEEEEECCCChhhccccccccC
Confidence 6899999999999999999876433222222111 11122222223467899999999998877777889
Q ss_pred hcceEEEEeeCCCCchhhH--HHHHHHHHH--cCCCcEEEeccCCCCCCCHHHHH--------H-HHHHHHHHHHhcCCC
Q 006068 142 MVEGAILVVDAGEGPLAQT--KFVLAKALK--YGLRPILLLNKVDRPAVSEERCD--------E-VESLVFDLFANLGAT 208 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt--~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~--------e-i~~~v~~l~~~~g~~ 208 (662)
.+|++|+|+|..+....+. ..++..... .++|+++++||+|+..... ... . ..++...+....+.
T Consensus 71 ~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~a~~~~~- 148 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVN-VLIQLARYGEKPVSQSRAKALAEKIGA- 148 (173)
T ss_pred CCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChh-HHHHHhhcCCCCcCHHHHHHHHHHhCC-
Confidence 9999999999887544333 345555544 3689999999999853210 000 0 01122333333332
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
.+++++||++|. |++++++.++
T Consensus 149 -----~~~~e~Sa~~~~--------------~v~~lf~~~~ 170 (173)
T cd04130 149 -----CEYIECSALTQK--------------NLKEVFDTAI 170 (173)
T ss_pred -----CeEEEEeCCCCC--------------CHHHHHHHHH
Confidence 269999999998 9999999875
No 231
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.64 E-value=2.3e-15 Score=145.37 Aligned_cols=161 Identities=16% Similarity=0.076 Sum_probs=105.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCC-CCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA-DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~-~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
+..+|+++|..|+|||||+++++..... ..+..++ +.........+......+++|||+|...|.....
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~----------~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~ 72 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTI----------KPRYAVNTVEVYGQEKYLILREVGEDEVAILLND 72 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCcc----------CcceEEEEEEECCeEEEEEEEecCCcccccccch
Confidence 5689999999999999999999876432 2221111 1111112222222236789999999999987778
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHH-HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKAL-KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~-~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
.+++.+|++|+|+|+.+....+. ..++.... ..++|+++|+||+|+.+.... ...+..++...++.. +
T Consensus 73 ~~~~~~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~~----~~~~~~~~~~~~~~~------~ 142 (169)
T cd01892 73 AELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQR----YEVQPDEFCRKLGLP------P 142 (169)
T ss_pred hhhhcCCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEcccccccccc----cccCHHHHHHHcCCC------C
Confidence 88899999999999977532222 23444332 237899999999998543211 011122222333432 2
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++||++|. |++++++.|.+.+-
T Consensus 143 ~~~~Sa~~~~--------------~v~~lf~~l~~~~~ 166 (169)
T cd01892 143 PLHFSSKLGD--------------SSNELFTKLATAAQ 166 (169)
T ss_pred CEEEEeccCc--------------cHHHHHHHHHHHhh
Confidence 5899999998 99999999987653
No 232
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.64 E-value=1e-15 Score=143.94 Aligned_cols=164 Identities=20% Similarity=0.199 Sum_probs=118.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
....+|.|+|.+|+|||||++++.+..+...+..++ |.....+...+.-+-..++||||.|+++|...-.
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTI----------gadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~ 76 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATI----------GADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGV 76 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhcccc----------chhheeeEEEEcCeEEEEEEEecccHHHhhhccc
Confidence 456899999999999999999999885433222222 3333444444544456789999999999998888
Q ss_pred HHHhhcceEEEEeeCCCCchhhHHHHHHHHHH--------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALK--------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~--------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
..+|.+|.++||+|....-...+..-|+.-.- ...|+||+.||+|..+.... ....+.....+...|
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r--~VS~~~Aq~WC~s~g--- 151 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSR--QVSEKKAQTWCKSKG--- 151 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccc--eeeHHHHHHHHHhcC---
Confidence 88999999999999887666666665543221 24689999999999653211 222334445555433
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++|++++|||.+. |+++.|+.+....-
T Consensus 152 ---nipyfEtSAK~~~--------------NV~~AFe~ia~~aL 178 (210)
T KOG0394|consen 152 ---NIPYFETSAKEAT--------------NVDEAFEEIARRAL 178 (210)
T ss_pred ---CceeEEecccccc--------------cHHHHHHHHHHHHH
Confidence 5899999999999 99999988876543
No 233
>cd04096 eEF2_snRNP_like_C eEF2_snRNP_like_C: this family represents a C-terminal domain of eukaryotic elongation factor 2 (eEF-2) and a homologous domain of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.64 E-value=2.1e-16 Score=133.41 Aligned_cols=72 Identities=24% Similarity=0.184 Sum_probs=68.2
Q ss_pred ecceeEEEEE----chhHHHHhhccceEEEeecccc--C--CEEEEEEEeccccccchhhhccccceeeEEeeeeeccee
Q 006068 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G--WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYE 530 (662)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~--~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~ 530 (662)
|||++++|.+ +|+|+++|++|||.+ .+++ + ++++|+|.+|+++++||.++|+++|+|+|+|++.|+||+
T Consensus 1 EPi~~~~I~~p~~~~g~V~~~l~~rrg~i---~~~~~~~~~~~~~i~~~iP~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~ 77 (80)
T cd04096 1 EPIYLVEIQCPEDALGKVYSVLSKRRGHV---LSEEPKEGTPLFEIKAYLPVIESFGFETDLRSATSGQAFPQLVFSHWE 77 (80)
T ss_pred CCEEEEEEEEcHHHhhHHHHhhhhCeeEE---eEEeecCCCccEEEEEEEeHHHHhCcHHHHHhhCCCCcEEEEEeceeE
Confidence 8999999999 999999999999999 8877 2 459999999999999999999999999999999999999
Q ss_pred ecc
Q 006068 531 KHR 533 (662)
Q Consensus 531 ~~~ 533 (662)
|++
T Consensus 78 ~~~ 80 (80)
T cd04096 78 IVP 80 (80)
T ss_pred ECc
Confidence 985
No 234
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=99.64 E-value=1.1e-15 Score=130.52 Aligned_cols=81 Identities=26% Similarity=0.260 Sum_probs=74.9
Q ss_pred eEEEeeee---ecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCc
Q 006068 265 MLVTMMEK---DFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGM 341 (662)
Q Consensus 265 ~~V~~~~~---~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl 341 (662)
++|||+.+ +++.|+++++|||+|+|++||.|++...+ ..++|.+|+.++|.++.++++|.||||++++|+
T Consensus 1 ~~vfKv~~~~~~~~~Gkla~~Rv~sG~l~~g~~v~~~~~~-------~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl 73 (85)
T cd03689 1 GFVFKIQANMDPAHRDRIAFVRVCSGKFERGMKVKHVRLG-------KEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNP 73 (85)
T ss_pred CEEEEEecccCCCCCcEEEEEEEECCEEcCCCEEEEcCCC-------CEEEeeEeEEEecCCeeEcCEECCCCEEEEECC
Confidence 47999999 99999999999999999999999987532 357899999999999999999999999999999
Q ss_pred CCCccCceeee
Q 006068 342 TKPSIGHTVAN 352 (662)
Q Consensus 342 ~~~~~GdTl~~ 352 (662)
+++.+|||||+
T Consensus 74 ~~~~~Gdtl~~ 84 (85)
T cd03689 74 GNFQIGDTLTE 84 (85)
T ss_pred CCccccCEeeC
Confidence 99999999984
No 235
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.64 E-value=2.2e-15 Score=166.73 Aligned_cols=158 Identities=20% Similarity=0.238 Sum_probs=111.5
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------ 131 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d------ 131 (662)
+-+..|+|+|.+|+|||||+++|+... .......+.|+......+.+++..++|+||||..+
T Consensus 157 k~~adV~LVG~PNAGKSTLln~Ls~ak------------pkIadypfTTl~P~lGvv~~~~~~f~laDtPGliegas~g~ 224 (500)
T PRK12296 157 KSVADVGLVGFPSAGKSSLISALSAAK------------PKIADYPFTTLVPNLGVVQAGDTRFTVADVPGLIPGASEGK 224 (500)
T ss_pred cccceEEEEEcCCCCHHHHHHHHhcCC------------ccccccCcccccceEEEEEECCeEEEEEECCCCccccchhh
Confidence 346799999999999999999998651 12234467888888888889999999999999643
Q ss_pred -chHHHHHHHhhcceEEEEeeCCCC-----chhhHHH----HHHHH----------HHcCCCcEEEeccCCCCCCCHHHH
Q 006068 132 -FGGEVERVVGMVEGAILVVDAGEG-----PLAQTKF----VLAKA----------LKYGLRPILLLNKVDRPAVSEERC 191 (662)
Q Consensus 132 -F~~ev~~~l~~aD~aIlVVDa~~G-----~~~qt~~----~l~~~----------~~~~lp~IvviNKiD~~~~~~~~~ 191 (662)
...+..+.+..||++|+|||+... +..+-.. +..+. ...+.|+|||+||+|+++..
T Consensus 225 gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~---- 300 (500)
T PRK12296 225 GLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDAR---- 300 (500)
T ss_pred HHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhH----
Confidence 234556677889999999998641 1112111 22222 12468999999999995432
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 192 DEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 192 ~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+..+.+...+... .+|++++||+++. |+++|+++|.+.+.
T Consensus 301 -el~e~l~~~l~~~-------g~~Vf~ISA~tge--------------GLdEL~~~L~ell~ 340 (500)
T PRK12296 301 -ELAEFVRPELEAR-------GWPVFEVSAASRE--------------GLRELSFALAELVE 340 (500)
T ss_pred -HHHHHHHHHHHHc-------CCeEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 1222222333322 2579999999998 99999999887764
No 236
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=99.63 E-value=1.4e-15 Score=129.29 Aligned_cols=83 Identities=29% Similarity=0.461 Sum_probs=76.7
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~ 342 (662)
|.++|||++++++.|+++++|||+|+|++||.|++.... ...+|.+|+.+.|.++.+++++.||||+++.|++
T Consensus 1 ~~a~Vfk~~~d~~~G~~~~~Rv~sG~l~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~g~~ 73 (83)
T cd04088 1 FVALVFKTIHDPFVGKLSFVRVYSGTLKAGSTLYNSTKG-------KKERVGRLLRMHGKKQEEVEEAGAGDIGAVAGLK 73 (83)
T ss_pred CEEEEEEcccCCCCceEEEEEEecCEEcCCCEEEECCCC-------cEEEeeEEEEEcCCCceECCEeCCCCEEEEECCC
Confidence 578999999999999999999999999999999988532 4678999999999999999999999999999999
Q ss_pred CCccCceeee
Q 006068 343 KPSIGHTVAN 352 (662)
Q Consensus 343 ~~~~GdTl~~ 352 (662)
++.+||||++
T Consensus 74 ~~~~Gdtl~~ 83 (83)
T cd04088 74 DTATGDTLCD 83 (83)
T ss_pred CCccCCEeeC
Confidence 9999999974
No 237
>cd03713 EFG_mtEFG_C EFG_mtEFG_C: domains similar to the C-terminal domain of the bacterial translational elongation factor (EF) EF-G. Included in this group is the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2) proteins. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide
Probab=99.63 E-value=2.6e-16 Score=132.18 Aligned_cols=72 Identities=28% Similarity=0.271 Sum_probs=69.3
Q ss_pred ecceeEEEEE----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeec
Q 006068 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (662)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (662)
|||++++|.+ .|.|+++|++|||++ .+++ +++..|+|.+|+++++||.++|+++|+|+|++++.|+||+++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~i---~~~~~~~~~~~i~~~iP~~e~~~~~~~Lr~~T~G~a~~~~~f~~y~~~ 77 (78)
T cd03713 1 EPIMKVEVTVPEEYMGDVIGDLSSRRGQI---LGTESRGGWKVIKAEVPLAEMFGYSTDLRSLTQGRGSFTMEFSHYEEV 77 (78)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHHcCCce---EceeccCCcEEEEEEcCHHHHhChHHHHHhhcCCeEEEEEEecceeEC
Confidence 8999999999 999999999999999 9988 478999999999999999999999999999999999999997
Q ss_pred c
Q 006068 533 R 533 (662)
Q Consensus 533 ~ 533 (662)
+
T Consensus 78 ~ 78 (78)
T cd03713 78 P 78 (78)
T ss_pred c
Confidence 4
No 238
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.63 E-value=6.2e-15 Score=147.81 Aligned_cols=156 Identities=19% Similarity=0.182 Sum_probs=105.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe---cCeeEEEEeCCCCccchHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW---RENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~---~~~~iniIDTPGh~dF~~ev~ 137 (662)
.+|+++|..|+|||||+++|+........ .+.+..+.....+.+ ....++||||||+..|.....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~~~~~------------~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~ 70 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFAEVS------------DPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITR 70 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCC------------CceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHH
Confidence 58999999999999999999976332111 111222222222322 236899999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.+++.+|++|+|+|..+....+. ..++..+.+. ..|++++.||+|+....... .++...+...++
T Consensus 71 ~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v~----~~~~~~~~~~~~------ 140 (211)
T cd04111 71 SYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVT----REEAEKLAKDLG------ 140 (211)
T ss_pred HHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEccccccccccC----HHHHHHHHHHhC------
Confidence 89999999999999887533222 3344444332 45678899999985422111 112222233322
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++|+.|.+.+.
T Consensus 141 -~~~~e~Sak~g~--------------~v~e~f~~l~~~~~ 166 (211)
T cd04111 141 -MKYIETSARTGD--------------NVEEAFELLTQEIY 166 (211)
T ss_pred -CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 569999999998 99999999987764
No 239
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.63 E-value=6.8e-15 Score=149.21 Aligned_cols=163 Identities=17% Similarity=0.148 Sum_probs=109.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|..++|||||+.+|+...+...+..++.+. . .....+......++||||+|+.+|......+
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~----------~-~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~ 81 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFEN----------Y-TAGLETEEQRVELSLWDTSGSPYYDNVRPLC 81 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeee----------e-EEEEEECCEEEEEEEEeCCCchhhHHHHHHH
Confidence 3589999999999999999999775443333332111 1 1111222334789999999999998888889
Q ss_pred HhhcceEEEEeeCCCCchhhH--HHHHHHHHHc--CCCcEEEeccCCCCCCCHHH--------HHHHHHHHHHHHHhcCC
Q 006068 140 VGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEER--------CDEVESLVFDLFANLGA 207 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~--------~~ei~~~v~~l~~~~g~ 207 (662)
++.+|++|||+|.++....+. ..|+..+.+. +.|+|+|.||+|+....... ..-..++..++...+++
T Consensus 82 ~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~ 161 (232)
T cd04174 82 YSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGA 161 (232)
T ss_pred cCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCC
Confidence 999999999999987655543 3455555543 67899999999985311000 00011234444444443
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
. +++++||++|.+ |++++|+.++..+
T Consensus 162 ~------~~~EtSAktg~~-------------~V~e~F~~~~~~~ 187 (232)
T cd04174 162 E------VYLECSAFTSEK-------------SIHSIFRSASLLC 187 (232)
T ss_pred C------EEEEccCCcCCc-------------CHHHHHHHHHHHH
Confidence 1 489999999951 6999998887554
No 240
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.62 E-value=4.5e-15 Score=162.28 Aligned_cols=154 Identities=21% Similarity=0.263 Sum_probs=109.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-CeeEEEEeCCCCcc------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHAD------ 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-~~~iniIDTPGh~d------ 131 (662)
-+..|+|+|.+|+|||||+++|+... .......+.|+......+.+. +..++|+||||+..
T Consensus 157 ~~adVglVG~pNaGKSTLLn~Lt~ak------------~kIa~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~ 224 (424)
T PRK12297 157 LLADVGLVGFPNVGKSTLLSVVSNAK------------PKIANYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGV 224 (424)
T ss_pred ccCcEEEEcCCCCCHHHHHHHHHcCC------------CccccCCcceeceEEEEEEEeCCceEEEEECCCCcccccccc
Confidence 35689999999999999999998752 122234567777777777777 78999999999743
Q ss_pred -chHHHHHHHhhcceEEEEeeCCCC----chhhHHHHHHHHHH-----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHH
Q 006068 132 -FGGEVERVVGMVEGAILVVDAGEG----PLAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (662)
Q Consensus 132 -F~~ev~~~l~~aD~aIlVVDa~~G----~~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l 201 (662)
+.....+.+..+|++|+|||+.+. +..+...+...+.. .+.|.|||+||+|+... .+ ..+ .+
T Consensus 225 gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e----~l~---~l 296 (424)
T PRK12297 225 GLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EE----NLE---EF 296 (424)
T ss_pred hHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HH----HHH---HH
Confidence 334556667779999999998642 22333344444443 37899999999998432 11 112 22
Q ss_pred HHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
...++ .+++++||+++. |+++|++.|.+.++
T Consensus 297 ~~~l~-------~~i~~iSA~tge--------------GI~eL~~~L~~~l~ 327 (424)
T PRK12297 297 KEKLG-------PKVFPISALTGQ--------------GLDELLYAVAELLE 327 (424)
T ss_pred HHHhC-------CcEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 22222 468999999998 99999999987764
No 241
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.62 E-value=1.1e-14 Score=146.99 Aligned_cols=160 Identities=14% Similarity=0.132 Sum_probs=106.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+|+|..++|||||+.+|+...+...+..++.+.. .....+......++||||+|+..|......++
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~-----------~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~ 70 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENY-----------TASFEIDKRRIELNMWDTSGSSYYDNVRPLAY 70 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccce-----------EEEEEECCEEEEEEEEeCCCcHHHHHHhHHhc
Confidence 4799999999999999999998755433333332211 11112222346789999999999998888899
Q ss_pred hhcceEEEEeeCCCCchhhHH-HHHH-HHHH--cCCCcEEEeccCCCCCCCHHHHHH---------HHHHHHHHHHhcCC
Q 006068 141 GMVEGAILVVDAGEGPLAQTK-FVLA-KALK--YGLRPILLLNKVDRPAVSEERCDE---------VESLVFDLFANLGA 207 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~-~~l~-~~~~--~~lp~IvviNKiD~~~~~~~~~~e---------i~~~v~~l~~~~g~ 207 (662)
+.+|++|+|+|..+....+.. ..|. .... .+.|+|+|.||+|+.... ....+ ..++...+...+|+
T Consensus 71 ~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~-~~~~~~~~~~~~pIs~e~g~~~ak~~~~ 149 (222)
T cd04173 71 PDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDL-ATLRELSKQRLIPVTHEQGTVLAKQVGA 149 (222)
T ss_pred cCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccch-hhhhhhhhccCCccCHHHHHHHHHHcCC
Confidence 999999999998876443333 3343 2322 368999999999985421 11111 01223333334442
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
++++++||+++.+ |++++|+.....
T Consensus 150 ------~~y~E~SAk~~~~-------------~V~~~F~~~~~~ 174 (222)
T cd04173 150 ------VSYVECSSRSSER-------------SVRDVFHVATVA 174 (222)
T ss_pred ------CEEEEcCCCcCCc-------------CHHHHHHHHHHH
Confidence 3699999999871 499999887764
No 242
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.61 E-value=2.2e-14 Score=136.28 Aligned_cols=156 Identities=19% Similarity=0.294 Sum_probs=105.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc----------
Q 006068 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF---------- 132 (662)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF---------- 132 (662)
|+++|+.|+|||||++.|++.... ...+...+.|..... +.++ ..+.+|||||+.+.
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~----------~~~~~~~~~t~~~~~--~~~~-~~~~~~D~~g~~~~~~~~~~~~~~ 68 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKL----------ARTSKTPGKTQLINF--FNVN-DKFRLVDLPGYGYAKVSKEVKEKW 68 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCce----------eeecCCCCcceeEEE--EEcc-CeEEEecCCCccccccCHHHHHHH
Confidence 799999999999999999954221 111222344433322 2222 38999999997653
Q ss_pred hHHHHHHHh---hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 133 GGEVERVVG---MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 133 ~~ev~~~l~---~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
......++. .++++++|+|+..........+++.+...+.|+++++||+|+.. ..........+...+....
T Consensus 69 ~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~--~~~~~~~~~~~~~~l~~~~--- 143 (170)
T cd01876 69 GKLIEEYLENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLK--KSELAKALKEIKKELKLFE--- 143 (170)
T ss_pred HHHHHHHHHhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCC--hHHHHHHHHHHHHHHHhcc---
Confidence 222333343 45789999999887777777788888888999999999999843 2222333333333333111
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
...|++++||+++. |+.++++.|.+++
T Consensus 144 --~~~~~~~~Sa~~~~--------------~~~~l~~~l~~~~ 170 (170)
T cd01876 144 --IDPPIILFSSLKGQ--------------GIDELRALIEKWL 170 (170)
T ss_pred --CCCceEEEecCCCC--------------CHHHHHHHHHHhC
Confidence 12569999999998 9999999998753
No 243
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.61 E-value=4.7e-15 Score=159.21 Aligned_cols=154 Identities=23% Similarity=0.234 Sum_probs=122.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH--
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE-- 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~-- 137 (662)
-.+++|+|.||+|||||+|+|++. |..-+....|+|.+.-...+..+|+.+.|+||.|..+-...++
T Consensus 217 G~kvvIiG~PNvGKSSLLNaL~~~-----------d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~i 285 (454)
T COG0486 217 GLKVVIIGRPNVGKSSLLNALLGR-----------DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERI 285 (454)
T ss_pred CceEEEECCCCCcHHHHHHHHhcC-----------CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCccHHHHH
Confidence 468999999999999999999998 5556666789999999999999999999999999776544443
Q ss_pred ------HHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 138 ------RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 138 ------~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+..||.+++|+|+.++...+....+. +...+.|+++|+||+|+....... .+ +.. .
T Consensus 286 GIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~~~------~~-----~~~--~-- 349 (454)
T COG0486 286 GIERAKKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIELE------SE-----KLA--N-- 349 (454)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccccc------hh-----hcc--C--
Confidence 4678899999999999986666666666 566789999999999996543210 00 000 1
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
..|++++||++|. |++.|.++|.+.+..-
T Consensus 350 -~~~~i~iSa~t~~--------------Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 350 -GDAIISISAKTGE--------------GLDALREAIKQLFGKG 378 (454)
T ss_pred -CCceEEEEecCcc--------------CHHHHHHHHHHHHhhc
Confidence 2368999999998 9999999998887654
No 244
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.61 E-value=6.8e-15 Score=135.11 Aligned_cols=159 Identities=18% Similarity=0.187 Sum_probs=116.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|.+||.+|+|||+|+-++....+......+ -|+.+..+...+..+..++.||||.|++.|...+..
T Consensus 10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~t----------IGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpS 79 (209)
T KOG0080|consen 10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTT----------IGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPS 79 (209)
T ss_pred eeEEEEEEccCCccHHHHHHHHHhcccCccCCce----------eeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHh
Confidence 3579999999999999999999987543222222 267777777788778899999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHH-HHHHHc----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVL-AKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l-~~~~~~----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.|.|+|+|+|.+..-......+| +.+..+ ++-.++|.||+|+...+.. ..++-.++..++++
T Consensus 80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V----~reEG~kfAr~h~~------ 149 (209)
T KOG0080|consen 80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVV----DREEGLKFARKHRC------ 149 (209)
T ss_pred HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCccHhHhhhcccccchhcccc----cHHHHHHHHHhhCc------
Confidence 99999999999998765444444444 444433 3345789999998643221 12333444444433
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
=++++||++.. |++..|+.++..+
T Consensus 150 -LFiE~SAkt~~--------------~V~~~FeelveKI 173 (209)
T KOG0080|consen 150 -LFIECSAKTRE--------------NVQCCFEELVEKI 173 (209)
T ss_pred -EEEEcchhhhc--------------cHHHHHHHHHHHH
Confidence 37999999998 8888887777654
No 245
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=7.5e-15 Score=142.83 Aligned_cols=158 Identities=23% Similarity=0.280 Sum_probs=114.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
++..+|+++|..|+|||||+++|.... ... ..-|+......+.++++.+++||.+|+..|...+.
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~-----------~~~----~~pT~g~~~~~i~~~~~~~~~~d~gG~~~~~~~w~ 76 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGE-----------ISE----TIPTIGFNIEEIKYKGYSLTIWDLGGQESFRPLWK 76 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSS-----------EEE----EEEESSEEEEEEEETTEEEEEEEESSSGGGGGGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhcc-----------ccc----cCcccccccceeeeCcEEEEEEeccccccccccce
Confidence 456799999999999999999997531 111 12233445567788999999999999999988888
Q ss_pred HHHhhcceEEEEeeCCCC-chhhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 138 RVVGMVEGAILVVDAGEG-PLAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G-~~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.++..+|++|+|||+.+. -..+....+..+.. .++|++|++||.|++++-.. . ++.+.+...... ...
T Consensus 77 ~y~~~~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~~~--~----~i~~~l~l~~l~-~~~ 149 (175)
T PF00025_consen 77 SYFQNADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAMSE--E----EIKEYLGLEKLK-NKR 149 (175)
T ss_dssp GGHTTESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSSTH--H----HHHHHTTGGGTT-SSS
T ss_pred eeccccceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcchh--h----HHHhhhhhhhcc-cCC
Confidence 999999999999998763 23445555544433 36899999999999765331 2 222222211111 233
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
.+.++.+||.+|. |+.+.+++|.+.
T Consensus 150 ~~~v~~~sa~~g~--------------Gv~e~l~WL~~~ 174 (175)
T PF00025_consen 150 PWSVFSCSAKTGE--------------GVDEGLEWLIEQ 174 (175)
T ss_dssp CEEEEEEBTTTTB--------------THHHHHHHHHHH
T ss_pred ceEEEeeeccCCc--------------CHHHHHHHHHhc
Confidence 5779999999998 999999999865
No 246
>PRK11058 GTPase HflX; Provisional
Probab=99.60 E-value=8.3e-15 Score=161.06 Aligned_cols=152 Identities=20% Similarity=0.240 Sum_probs=105.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCe-eEEEEeCCCCcc-------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHAD------- 131 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~-~iniIDTPGh~d------- 131 (662)
++.|+|+|.+|+|||||+|+|++.. . ......+.|++.....+.+.+. .+.||||||+.+
T Consensus 197 ~p~ValVG~~NaGKSSLlN~Lt~~~-----------~-~v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~lp~~lv 264 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEAR-----------V-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLV 264 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc-----------e-eeccCCCCCcCCceEEEEeCCCCeEEEEecCcccccCCHHHH
Confidence 4689999999999999999998651 1 1223346677666666776654 899999999843
Q ss_pred --chHHHHHHHhhcceEEEEeeCCCCchhhHH----HHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006068 132 --FGGEVERVVGMVEGAILVVDAGEGPLAQTK----FVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (662)
Q Consensus 132 --F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~----~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~ 205 (662)
|.. +...++.+|++|+|+|+.+....... .++..+...++|+++|+||+|+...... .. + . ...
T Consensus 265 e~f~~-tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~~---~~-~----~-~~~ 334 (426)
T PRK11058 265 AAFKA-TLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEP---RI-D----R-DEE 334 (426)
T ss_pred HHHHH-HHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchhH---HH-H----H-Hhc
Confidence 222 23345789999999999886544433 3344444447899999999998532110 01 0 0 011
Q ss_pred CCCCcCCCcc-EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 206 GATDEQLDFP-VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 206 g~~~~~~~~P-vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+ +| ++++||++|. |+++|++.|.+.++.
T Consensus 335 ~-------~~~~v~ISAktG~--------------GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 335 N-------KPIRVWLSAQTGA--------------GIPLLFQALTERLSG 363 (426)
T ss_pred C-------CCceEEEeCCCCC--------------CHHHHHHHHHHHhhh
Confidence 1 23 5889999999 999999999998854
No 247
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=99.60 E-value=5.3e-15 Score=126.63 Aligned_cols=86 Identities=42% Similarity=0.671 Sum_probs=77.5
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~ 342 (662)
|+++||++.++++.|+++++||++|+|++||.|++...+. .....+|.+|+.+.|.++.+++++.||||+++.|++
T Consensus 1 ~~~~vfk~~~d~~~g~i~~~Rv~sG~l~~g~~v~~~~~~~----~~~~~~v~~l~~~~g~~~~~v~~~~aG~I~~i~gl~ 76 (86)
T cd03691 1 LQMLVTTLDYDDYVGRIAIGRIFRGTVKVGQQVAVVKRDG----KIEKAKITKLFGFEGLKRVEVEEAEAGDIVAIAGIE 76 (86)
T ss_pred CeEEEEEeEecCCCCeEEEEEEEeCEEcCCCEEEEEcCCC----CEEEEEEeeEeeeeCCCeeECcEECCCCEEEEECCC
Confidence 6899999999999999999999999999999999875421 124578999999999999999999999999999999
Q ss_pred CCccCceeee
Q 006068 343 KPSIGHTVAN 352 (662)
Q Consensus 343 ~~~~GdTl~~ 352 (662)
++.+||||++
T Consensus 77 ~~~~Gdtl~~ 86 (86)
T cd03691 77 DITIGDTICD 86 (86)
T ss_pred CCcccceecC
Confidence 9999999963
No 248
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.60 E-value=6.2e-15 Score=168.49 Aligned_cols=146 Identities=25% Similarity=0.336 Sum_probs=108.4
Q ss_pred eCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH-----H-HHHH
Q 006068 67 AHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE-----V-ERVV 140 (662)
Q Consensus 67 Gh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e-----v-~~~l 140 (662)
|.+|+|||||+|+|++.. ......+|+|++.....+.+++.++++|||||+.+|... + ..++
T Consensus 1 G~pNvGKSSL~N~Ltg~~------------~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~~e~v~~~~l 68 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGAN------------QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSLEEEVARDYL 68 (591)
T ss_pred CCCCCCHHHHHHHHhCCC------------CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccchHHHHHHHHH
Confidence 789999999999998651 123446799999988889999999999999999887542 1 2222
Q ss_pred --hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEE
Q 006068 141 --GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (662)
Q Consensus 141 --~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~ 218 (662)
+.+|++++|+|+.+. ........++.+.++|+++|+||+|+.+... +..+...+.+.+ .+|+++
T Consensus 69 ~~~~aDvvI~VvDat~l--er~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~-----i~~d~~~L~~~l-------g~pvv~ 134 (591)
T TIGR00437 69 LNEKPDLVVNVVDASNL--ERNLYLTLQLLELGIPMILALNLVDEAEKKG-----IRIDEEKLEERL-------GVPVVP 134 (591)
T ss_pred hhcCCCEEEEEecCCcc--hhhHHHHHHHHhcCCCEEEEEehhHHHHhCC-----ChhhHHHHHHHc-------CCCEEE
Confidence 368999999999873 3345556667778999999999999843221 111122222223 357999
Q ss_pred cccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+||++|. |++++++.+.+..
T Consensus 135 tSA~tg~--------------Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 135 TSATEGR--------------GIERLKDAIRKAI 154 (591)
T ss_pred EECCCCC--------------CHHHHHHHHHHHh
Confidence 9999998 9999999998754
No 249
>cd04091 mtEFG1_II_like mtEFG1_C: C-terminus of mitochondrial Elongation factor G1 (mtEFG1)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. Mutants in yeast mtEFG1 have impaired mitochondrial protein synthesis, respiratory defects and a tendency to lose mitochondrial DNA. There are two forms of mtEFG present in mammals
Probab=99.60 E-value=4.6e-15 Score=125.55 Aligned_cols=81 Identities=26% Similarity=0.459 Sum_probs=74.3
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~ 342 (662)
|.++|||+.++++ |+++++||++|+|++||.|++...+ .+++|.+|+.+.|.++.+++++.||||+++.|++
T Consensus 1 ~~a~vfK~~~~~~-G~i~~~Rv~sG~lk~gd~v~~~~~~-------~~~~v~~i~~~~g~~~~~~~~~~aGdI~~i~g~~ 72 (81)
T cd04091 1 FVGLAFKLEEGRF-GQLTYMRIYQGKLKKGDTIYNVRTG-------KKVRVPRLVRMHSNEMEEVEEAGAGDICAIFGID 72 (81)
T ss_pred CeEEEEEeecCCC-CCEEEEEEecCEEcCCCEEEEcCCC-------CEEEEeEEEEEeCCCceEccEECCCCEEEEECCC
Confidence 5789999999988 9999999999999999999987532 4689999999999999999999999999999998
Q ss_pred CCccCceeee
Q 006068 343 KPSIGHTVAN 352 (662)
Q Consensus 343 ~~~~GdTl~~ 352 (662)
+.+||||++
T Consensus 73 -~~~Gdtl~~ 81 (81)
T cd04091 73 -CASGDTFTD 81 (81)
T ss_pred -cccCCEecC
Confidence 999999974
No 250
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.60 E-value=1.6e-14 Score=145.97 Aligned_cols=155 Identities=14% Similarity=0.100 Sum_probs=101.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCC-CCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGA-DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~-~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
+|+++|..|+|||||+++|+..... .... ...+.........+......++||||||+.++. ...++
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~----------~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~--~~~~~ 69 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYD----------ASGDDDTYERTVSVDGEESTLVVIDHWEQEMWT--EDSCM 69 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcC----------CCccccceEEEEEECCEEEEEEEEeCCCcchHH--HhHHh
Confidence 7999999999999999999754321 1111 111112222333333456789999999998432 23455
Q ss_pred h-hcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 141 G-MVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 141 ~-~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+ .+|++++|+|+.+....+ ...++..+.. .++|+|+|+||+|+....... .++...+.... .+
T Consensus 70 ~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~~a~~~-------~~ 138 (221)
T cd04148 70 QYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVS----VQEGRACAVVF-------DC 138 (221)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccceec----HHHHHHHHHHc-------CC
Confidence 6 899999999998754333 2344444444 368999999999985432211 11112222222 24
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++++||++|. |++++++.|.+.+.
T Consensus 139 ~~~e~SA~~~~--------------gv~~l~~~l~~~~~ 163 (221)
T cd04148 139 KFIETSAGLQH--------------NVDELLEGIVRQIR 163 (221)
T ss_pred eEEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 68999999998 99999999998774
No 251
>cd01514 Elongation_Factor_C Elongation factor G C-terminus. This domain includes the carboxyl terminal regions of elongation factors (EFs) bacterial EF-G, eukaryotic and archeal EF-2 and eukaryotic mitochondrial mtEFG1s and mtEFG2s. This group also includes proteins similar to the ribosomal protection proteins Tet(M) and Tet(O), BipA, LepA and, spliceosomal proteins: human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and yeast counterpart Snu114p. This domain adopts a ferredoxin-like fold consisting of an alpha-beta sandwich with anti-parallel beta-sheets, resembling the topology of domain III found in the elongation factors EF-G and eukaryotic EF-2, with which it forms the C-terminal block. The two domains however are not superimposable and domain III lacks some of the characteristics of this domain. EF-2/EF-G in complex with GTP, promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the
Probab=99.59 E-value=1.5e-15 Score=127.92 Aligned_cols=72 Identities=28% Similarity=0.246 Sum_probs=69.2
Q ss_pred ecceeEEEEE----chhHHHHhhccceEEEeecccc--C-CEEEEEEEeccccccchhhhccccceeeEEeeeeecceee
Q 006068 459 EPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEK 531 (662)
Q Consensus 459 EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~ 531 (662)
|||++++|.+ .|.|+++|++|||++ .+++ + ++.+|+|.+|+++++||+++|++.|+|+|+|++.|+||++
T Consensus 1 EPi~~~~I~~p~~~~g~v~~~l~~rrg~v---~~~~~~~~~~~~i~~~iP~~e~~g~~~~lr~~T~G~~~~~~~f~~y~~ 77 (79)
T cd01514 1 EPIMKVEITVPEEYLGAVIGDLSKRRGEI---LGMEPRGTGRVVIKAELPLAEMFGFATDLRSLTQGRASFSMEFSHYEP 77 (79)
T ss_pred CCEEEEEEEcCHHHHHHHHHHHHhcCCee---EeeEecCCCeEEEEEECCHHHHcCcHHHhhhhcCCeEEEEEEecceEe
Confidence 8999999999 999999999999999 8888 5 7999999999999999999999999999999999999998
Q ss_pred cc
Q 006068 532 HR 533 (662)
Q Consensus 532 ~~ 533 (662)
++
T Consensus 78 ~~ 79 (79)
T cd01514 78 VP 79 (79)
T ss_pred Cc
Confidence 74
No 252
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.58 E-value=2.2e-14 Score=135.27 Aligned_cols=159 Identities=19% Similarity=0.195 Sum_probs=117.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...++.|+|..|+|||+|+-+++...+......| -|+.......++.-+..+++||||.||+.|..-+..
T Consensus 5 ~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~T----------iGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~s 74 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLT----------IGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRS 74 (216)
T ss_pred ceEEEEEECCCCccHHHHHHHHhccCccccccce----------eeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHH
Confidence 4578999999999999999999987554332222 255555666666667789999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCc-hhhHHHHHHHHHHcC---CCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYG---LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~~~---lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+++.+.|||||+|.+... +.....|+..+++++ ..++++.||+|+...+... .++-..+.++.| +
T Consensus 75 yYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs----~EEGeaFA~ehg-------L 143 (216)
T KOG0098|consen 75 YYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVS----KEEGEAFAREHG-------L 143 (216)
T ss_pred HhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCcEEEEEcchhhhhcccccc----HHHHHHHHHHcC-------c
Confidence 999999999999976543 344455677777764 4467888999996543211 223333334444 3
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+++.+||+++. |+++.|..+...+
T Consensus 144 ifmETSakt~~--------------~VEEaF~nta~~I 167 (216)
T KOG0098|consen 144 IFMETSAKTAE--------------NVEEAFINTAKEI 167 (216)
T ss_pred eeehhhhhhhh--------------hHHHHHHHHHHHH
Confidence 57899999998 8998887766554
No 253
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.58 E-value=4.3e-14 Score=141.95 Aligned_cols=158 Identities=17% Similarity=0.122 Sum_probs=107.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+++|+.|+|||||+++++.......+..+ -|..+.........+...+++|||||+.+|......
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t----------~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~ 77 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPT----------LGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDG 77 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCc----------cceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHH
Confidence 4568999999999999999988765322111111 133333322223335689999999999999888888
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHH-HHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVL-AKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l-~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+++.+|++++|+|..+....++...| ..... .++|+++++||+|+..... ..+...+.... .+.
T Consensus 78 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~------~~~~~~~~~~~-------~~~ 144 (215)
T PTZ00132 78 YYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKDRQV------KARQITFHRKK-------NLQ 144 (215)
T ss_pred HhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECccCccccC------CHHHHHHHHHc-------CCE
Confidence 88999999999999887665554433 22221 3688889999999853211 11111222222 245
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++||++|. |+++++..|.+.+.
T Consensus 145 ~~e~Sa~~~~--------------~v~~~f~~ia~~l~ 168 (215)
T PTZ00132 145 YYDISAKSNY--------------NFEKPFLWLARRLT 168 (215)
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHHh
Confidence 8999999998 89998888887663
No 254
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.58 E-value=1.8e-14 Score=132.96 Aligned_cols=148 Identities=26% Similarity=0.264 Sum_probs=101.7
Q ss_pred EEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeE-eeeEEEEE--ecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 65 VIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITI-ASKVTGIS--WRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi-~~~~~~~~--~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
|+|++|+|||||+++|+..... ......|. ......+. ..+..+++|||||+.++.......++
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~ 67 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-------------PEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYR 67 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-------------CcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhc
Confidence 5899999999999999986431 00111111 11111222 23678999999999999888888999
Q ss_pred hcceEEEEeeCCCCchhhHHHHH-----HHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGPLAQTKFVL-----AKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~~~l-----~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++++|+|+..+........| ......+.|+++++||+|+.......... ....+... ...|+
T Consensus 68 ~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~~~~----~~~~~~~~------~~~~~ 137 (157)
T cd00882 68 GADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEE----LAEQLAKE------LGVPY 137 (157)
T ss_pred CCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchHHHH----HHHHHHhh------cCCcE
Confidence 99999999999987666555443 33445688999999999996543321111 01111111 13679
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
+++|+.++. |+.+++++|.
T Consensus 138 ~~~s~~~~~--------------~i~~~~~~l~ 156 (157)
T cd00882 138 FETSAKTGE--------------NVEELFEELA 156 (157)
T ss_pred EEEecCCCC--------------ChHHHHHHHh
Confidence 999999998 9999999875
No 255
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.57 E-value=3.4e-14 Score=135.82 Aligned_cols=149 Identities=16% Similarity=0.200 Sum_probs=98.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~~~ 139 (662)
+|+++|+.|+|||||+.+++......... +. .+ .....+.+++ ..+.||||+|+.+. .+
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~~~-------~~---~~----~~~~~i~~~~~~~~l~i~D~~g~~~~-----~~ 62 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQLES-------PE---GG----RFKKEVLVDGQSHLLLIRDEGGAPDA-----QF 62 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCCCC-------CC---cc----ceEEEEEECCEEEEEEEEECCCCCch-----hH
Confidence 79999999999999999998763322111 00 01 0112233444 67999999999763 45
Q ss_pred HhhcceEEEEeeCCCCchhhH-HHHHHHHHHc----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPLAQT-KFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
++.+|++++|+|..+....+. ..++..+... ++|+++|.||+|+...+...+. .++..++....+ .+
T Consensus 63 ~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~--~~~~~~~~~~~~------~~ 134 (158)
T cd04103 63 ASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVID--DARARQLCADMK------RC 134 (158)
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccC--HHHHHHHHHHhC------CC
Confidence 678999999999888665555 4555555543 4789999999998432211111 112223322221 25
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
+++++||++|. |++++|+.+.+.
T Consensus 135 ~~~e~SAk~~~--------------~i~~~f~~~~~~ 157 (158)
T cd04103 135 SYYETCATYGL--------------NVERVFQEAAQK 157 (158)
T ss_pred cEEEEecCCCC--------------CHHHHHHHHHhh
Confidence 79999999999 999999998764
No 256
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.57 E-value=1.6e-14 Score=145.93 Aligned_cols=175 Identities=22% Similarity=0.245 Sum_probs=116.4
Q ss_pred CCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc--
Q 006068 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-- 131 (662)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d-- 131 (662)
.....+..+||+||.+|+|||||.|.|++.. -.+..+.-.+|.......+..+..++.|+||||...
T Consensus 66 e~e~~k~L~vavIG~PNvGKStLtN~mig~k-----------v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~ 134 (379)
T KOG1423|consen 66 EEEAQKSLYVAVIGAPNVGKSTLTNQMIGQK-----------VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKK 134 (379)
T ss_pred chhcceEEEEEEEcCCCcchhhhhhHhhCCc-----------cccccccccceeeeeeEEEecCceEEEEecCCcccccc
Confidence 3445678899999999999999999999873 233444556666777777778889999999999431
Q ss_pred ----------chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc-CCCcEEEeccCCCCCCCHHHHHHHH-----
Q 006068 132 ----------FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-GLRPILLLNKVDRPAVSEERCDEVE----- 195 (662)
Q Consensus 132 ----------F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~-~lp~IvviNKiD~~~~~~~~~~ei~----- 195 (662)
|......++..||.+++|+|+.+.-.+..-.++..+.++ ++|-|+|+||+|.......- ....
T Consensus 135 ~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~L-l~l~~~Lt~ 213 (379)
T KOG1423|consen 135 MHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLL-LNLKDLLTN 213 (379)
T ss_pred hhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHH-hhhHHhccc
Confidence 445677889999999999998752222222345555444 78999999999985421100 0000
Q ss_pred -------HHHHHHHHhcC---CCCcCCCc----cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 196 -------SLVFDLFANLG---ATDEQLDF----PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 196 -------~~v~~l~~~~g---~~~~~~~~----Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
-++.+-|.... .......+ -||++||++|. |+++|-++|....|+
T Consensus 214 g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~--------------GikdlkqyLmsqa~~ 272 (379)
T KOG1423|consen 214 GELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGE--------------GIKDLKQYLMSQAPP 272 (379)
T ss_pred cccchhhhhHHHHhccCCcccccccccCcccceeEEEEeccccc--------------CHHHHHHHHHhcCCC
Confidence 01111111100 00000011 28999999998 999999999988764
No 257
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.57 E-value=2.7e-13 Score=137.25 Aligned_cols=143 Identities=18% Similarity=0.231 Sum_probs=104.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccc-eeEeeeEEEEEecCeeEEEEeCCCCccchHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERG-ITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~erg-iTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev 136 (662)
...+.|+|+|++|+|||||++.|+...... ......| +++ +..++.+++++||||+. ..+
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~----------~~~~~~g~i~i------~~~~~~~i~~vDtPg~~---~~~ 97 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQ----------NISDIKGPITV------VTGKKRRLTFIECPNDI---NAM 97 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccC----------ccccccccEEE------EecCCceEEEEeCCchH---HHH
Confidence 345789999999999999999998763211 1111223 222 22367899999999975 566
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEE-EeccCCCCCCCHHHHHHHHHHHHHHHH-hcCCCCcCCCc
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPIL-LLNKVDRPAVSEERCDEVESLVFDLFA-NLGATDEQLDF 214 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~Iv-viNKiD~~~~~~~~~~ei~~~v~~l~~-~~g~~~~~~~~ 214 (662)
...+..+|.+++|+|+.++...++..++..+...++|.++ |+||+|+.+. .....++.+++.+.+. .+. . ..
T Consensus 98 l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~-~~~~~~~~~~l~~~~~~~~~-~----~~ 171 (225)
T cd01882 98 IDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKK-NKTLRKTKKRLKHRFWTEVY-Q----GA 171 (225)
T ss_pred HHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCc-HHHHHHHHHHHHHHHHHhhC-C----CC
Confidence 6778999999999999999999999999999999999655 9999998642 3334555566655332 221 1 24
Q ss_pred cEEEcccccCc
Q 006068 215 PVLYASAKEGW 225 (662)
Q Consensus 215 Pvi~~SA~~g~ 225 (662)
|++++||++..
T Consensus 172 ki~~iSa~~~~ 182 (225)
T cd01882 172 KLFYLSGIVHG 182 (225)
T ss_pred cEEEEeeccCC
Confidence 79999999874
No 258
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=99.57 E-value=1.2e-14 Score=124.54 Aligned_cols=82 Identities=24% Similarity=0.274 Sum_probs=72.2
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc-C-
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-G- 340 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~-g- 340 (662)
|+++|||+++++|.|+++++|||+|+|++||.|++...+ +.++|.+|+.+ +.++.+++++.||||+++. |
T Consensus 1 ~~~~Vfk~~~d~~~G~i~~~Rv~sG~l~~~~~v~~~~~~-------~~~~i~~l~~~-~~~~~~~~~~~aGdI~~v~~g~ 72 (86)
T cd03699 1 LRALIFDSWYDPYRGVIALVRVFDGTLKKGDKIRFMSTG-------KEYEVEEVGIF-RPEMTPTDELSAGQVGYIIAGI 72 (86)
T ss_pred CEEEEEEeeccCCCCEEEEEEEEcCEEcCCCEEEEecCC-------CeEEEEEEEEE-CCCccCCceECCCCEEEEEccc
Confidence 689999999999999999999999999999999987532 35789999955 7788999999999999995 3
Q ss_pred --cCCCccCceeee
Q 006068 341 --MTKPSIGHTVAN 352 (662)
Q Consensus 341 --l~~~~~GdTl~~ 352 (662)
++++.+|||||+
T Consensus 73 ~~l~~~~~Gdtl~~ 86 (86)
T cd03699 73 KTVKDARVGDTITL 86 (86)
T ss_pred cccCccccccEeeC
Confidence 677899999974
No 259
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=3.5e-14 Score=128.59 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=116.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
-..++.|+|...+|||||+-+.+..++......++ ||....+...-.-+..+++||||.|++.+...+-.
T Consensus 20 ymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTv----------GidFKvKTvyr~~kRiklQiwDTagqEryrtiTTa 89 (193)
T KOG0093|consen 20 YMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV----------GIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTA 89 (193)
T ss_pred ceeeEEEEccCCccchhhhHHhhccccccceeeee----------eeeEEEeEeeecccEEEEEEEecccchhhhHHHHH
Confidence 35689999999999999999999886654433333 66655554333334578999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCchhhHH-HHHHHHH---HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK-FVLAKAL---KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~---~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+++.+++.||++|.+........ .|.-+.. ..+.|+|+|.||||+...+.- ..+....+..++|++
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvi----s~e~g~~l~~~LGfe------ 159 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVI----SHERGRQLADQLGFE------ 159 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeeccCceEEEEecccCCccceee----eHHHHHHHHHHhChH------
Confidence 99999999999997764433333 3333333 248899999999999653321 123445566667763
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||+.+. |++++|+.++..+
T Consensus 160 -fFEtSaK~Ni--------------nVk~~Fe~lv~~I 182 (193)
T KOG0093|consen 160 -FFETSAKENI--------------NVKQVFERLVDII 182 (193)
T ss_pred -Hhhhcccccc--------------cHHHHHHHHHHHH
Confidence 7999999998 8988888877654
No 260
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.56 E-value=4.2e-14 Score=134.70 Aligned_cols=156 Identities=25% Similarity=0.309 Sum_probs=107.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|+.++|||||+++|...........+ .|.........+......+.|||++|+.+|.......++
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t----------~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~ 70 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPT----------IGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYR 70 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETT----------SSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccc----------ccccccccccccccccccccccccccccccccccccccc
Confidence 5899999999999999999976433222111 133333333333334567999999999999888888899
Q ss_pred hcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 142 MVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
.+|++|+|+|..+...-+. ..|+..+... +.|++|+.||.|+...+.-. .++...+...++ +|++
T Consensus 71 ~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~v~----~~~~~~~~~~~~-------~~~~ 139 (162)
T PF00071_consen 71 NSDAIIIVFDVTDEESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSDEREVS----VEEAQEFAKELG-------VPYF 139 (162)
T ss_dssp TESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGGGSSSC----HHHHHHHHHHTT-------SEEE
T ss_pred ccccccccccccccccccccccccccccccccccccceeeeccccccccccch----hhHHHHHHHHhC-------CEEE
Confidence 9999999999876433332 3444444433 46888999999986422111 123334444433 5799
Q ss_pred EcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.+||+++. |+.++|..+++.+
T Consensus 140 e~Sa~~~~--------------~v~~~f~~~i~~i 160 (162)
T PF00071_consen 140 EVSAKNGE--------------NVKEIFQELIRKI 160 (162)
T ss_dssp EEBTTTTT--------------THHHHHHHHHHHH
T ss_pred EEECCCCC--------------CHHHHHHHHHHHH
Confidence 99999998 9999999988653
No 261
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.56 E-value=3.5e-14 Score=139.46 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=101.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~~ 138 (662)
.+|+|+|..|+|||||+++|+..........++.+. -...+.++ ...+++|||||+.+|......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~-------------~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~ 68 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFEN-------------YVTDCRVDGKPVQLALWDTAGQEEYERLRPL 68 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccce-------------EEEEEEECCEEEEEEEEECCCChhccccchh
Confidence 379999999999999999998653221111111110 01122222 356899999999888655555
Q ss_pred HHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHH-------HHHHHHHHHHHHHHhcCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEE-------RCDEVESLVFDLFANLGA 207 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~-------~~~ei~~~v~~l~~~~g~ 207 (662)
.++.+|++++|+|.......+.. .|+..+... .+|+|+|.||+|+...... +.. ..++...+...++.
T Consensus 69 ~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 147 (187)
T cd04129 69 SYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFV-PIQQGKRVAKEIGA 147 (187)
T ss_pred hcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcC-CHHHHHHHHHHhCC
Confidence 67899999999998764433332 244444433 6899999999998542110 000 01122223333332
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++|+.+.+.+.
T Consensus 148 ------~~~~e~Sa~~~~--------------~v~~~f~~l~~~~~ 173 (187)
T cd04129 148 ------KKYMECSALTGE--------------GVDDVFEAATRAAL 173 (187)
T ss_pred ------cEEEEccCCCCC--------------CHHHHHHHHHHHHh
Confidence 368999999999 99999999987653
No 262
>PF14492 EFG_II: Elongation Factor G, domain II; PDB: 1WDT_A 2DY1_A 2XEX_A 1ELO_A 2XSY_Y 2WRK_Y 1DAR_A 2WRI_Y 2XUY_Y 3J0E_H ....
Probab=99.55 E-value=7.4e-15 Score=122.15 Aligned_cols=73 Identities=23% Similarity=0.420 Sum_probs=64.9
Q ss_pred CCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhc-CeEE
Q 006068 364 LDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE-GFEL 441 (662)
Q Consensus 364 ~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrre-g~ev 441 (662)
||+|++++++.|.+. .+..+|.++|.++.++||+|++..+ ++++++|+||||+||+|++++|+++ |+++
T Consensus 1 ~p~Pv~~~~i~p~~~---------~d~~kl~~aL~~l~~eDP~l~~~~d~et~e~~l~g~Gelhlev~~~~L~~~~~v~v 71 (75)
T PF14492_consen 1 FPPPVLSVAIEPKNK---------EDEPKLSEALQKLSEEDPSLRVERDEETGELILSGMGELHLEVLLERLKRRFGVEV 71 (75)
T ss_dssp SSS-SEEEEEEESSH---------HHHHHHHHHHHHHHHH-TTSEEEEETTTSEEEEEESSHHHHHHHHHHHHHTTCEBE
T ss_pred CCCCeEEEEEEECCH---------hHHHHHHHHHHHHHhcCCeEEEEEcchhceEEEEECCHHHHHHHHHHHHHHHCCee
Confidence 688999999999865 7889999999999999999999997 7788999999999999999999875 9999
Q ss_pred EEeC
Q 006068 442 SVSP 445 (662)
Q Consensus 442 ~vs~ 445 (662)
++++
T Consensus 72 ~~~~ 75 (75)
T PF14492_consen 72 EFGK 75 (75)
T ss_dssp EEE-
T ss_pred EecC
Confidence 9874
No 263
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.54 E-value=1.2e-13 Score=140.53 Aligned_cols=82 Identities=21% Similarity=0.316 Sum_probs=63.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc-------hH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF-------GG 134 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF-------~~ 134 (662)
+|+++|.+|+|||||+++|+.... ......+.|.......+.+++..+++|||||+.+. ..
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~------------~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~~~~~ 69 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKS------------EVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRGR 69 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc------------cccCCCCccccceEEEEEECCeEEEEEECCCcccccccchhHHH
Confidence 689999999999999999986521 11223355655666677788999999999998543 34
Q ss_pred HHHHHHhhcceEEEEeeCCCC
Q 006068 135 EVERVVGMVEGAILVVDAGEG 155 (662)
Q Consensus 135 ev~~~l~~aD~aIlVVDa~~G 155 (662)
.+..+++.+|++++|+|+.+.
T Consensus 70 ~~l~~~~~ad~il~V~D~t~~ 90 (233)
T cd01896 70 QVIAVARTADLILMVLDATKP 90 (233)
T ss_pred HHHHhhccCCEEEEEecCCcc
Confidence 566788999999999998753
No 264
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.54 E-value=4.9e-14 Score=127.79 Aligned_cols=159 Identities=23% Similarity=0.230 Sum_probs=114.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
-..+|+++|..|+|||.|+.++....+......++ |+....+...+..+..+++||||.|++.|..-+..
T Consensus 6 flfkivlvgnagvgktclvrrftqglfppgqgati----------gvdfmiktvev~gekiklqiwdtagqerfrsitqs 75 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATI----------GVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQS 75 (213)
T ss_pred eeEEEEEEccCCcCcchhhhhhhccCCCCCCCcee----------eeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHH
Confidence 46899999999999999999998765433222222 55556666666667789999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+++.++++|||+|....+.... -+|++...++ ++--|+|.||+|+.+.+ ++-+++-+-|.+. .+.
T Consensus 76 yyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drr-----evp~qigeefs~~------qdm 144 (213)
T KOG0095|consen 76 YYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRR-----EVPQQIGEEFSEA------QDM 144 (213)
T ss_pred HhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcceEEEeeccccchhhhh-----hhhHHHHHHHHHh------hhh
Confidence 9999999999999776554433 3566666655 33457899999995422 2333332222211 112
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
-++.+||+... +++.||..+.-.+
T Consensus 145 yfletsakea~--------------nve~lf~~~a~rl 168 (213)
T KOG0095|consen 145 YFLETSAKEAD--------------NVEKLFLDLACRL 168 (213)
T ss_pred hhhhhcccchh--------------hHHHHHHHHHHHH
Confidence 37889999987 8999988776544
No 265
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.53 E-value=2.5e-13 Score=135.39 Aligned_cols=115 Identities=21% Similarity=0.252 Sum_probs=80.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE--ecCeeEEEEeCCCCccchHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS--WRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~--~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
++|+++|++|+|||||+.+|..........+ ++.......+. .++..+.|||||||.+|......
T Consensus 1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s-------------~~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~ 67 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTS-------------IEPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLE 67 (203)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCCCccCc-------------EeecceEEEeecCCCCceEEEEECCCCHHHHHHHHH
Confidence 4799999999999999999987632211100 00011111111 34678999999999999999999
Q ss_pred HHhhc-ceEEEEeeCCCCc--hhhHHHHHHHHH----H--cCCCcEEEeccCCCCCCCH
Q 006068 139 VVGMV-EGAILVVDAGEGP--LAQTKFVLAKAL----K--YGLRPILLLNKVDRPAVSE 188 (662)
Q Consensus 139 ~l~~a-D~aIlVVDa~~G~--~~qt~~~l~~~~----~--~~lp~IvviNKiD~~~~~~ 188 (662)
+++.+ +++|+|||+.... ...+..+|..+. . .++|+++|+||+|+..+.+
T Consensus 68 ~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~ 126 (203)
T cd04105 68 TLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKP 126 (203)
T ss_pred HHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccCC
Confidence 99998 9999999998752 223333333221 1 4889999999999976554
No 266
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=6.4e-14 Score=135.08 Aligned_cols=162 Identities=17% Similarity=0.181 Sum_probs=120.0
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
..+..++|+++|.+++|||-|+.++....+......+ -|+.+......+..+-.+.+||||.|+++|..-
T Consensus 10 ~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksT----------IGvef~t~t~~vd~k~vkaqIWDTAGQERyrAi 79 (222)
T KOG0087|consen 10 EYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKST----------IGVEFATRTVNVDGKTVKAQIWDTAGQERYRAI 79 (222)
T ss_pred ccceEEEEEEeCCCccchhHHHHHhcccccCcccccc----------eeEEEEeeceeecCcEEEEeeecccchhhhccc
Confidence 3456789999999999999999999887443222222 266667767777777789999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCch-hhHHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+++.+-||+||+|.+.... .....|+++++.+ ++++++|.||+|+.+.+....+ +...+....+
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~lraV~te----~~k~~Ae~~~----- 150 (222)
T KOG0087|consen 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTE----DGKAFAEKEG----- 150 (222)
T ss_pred cchhhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhhccccchh----hhHhHHHhcC-----
Confidence 9999999999999999866544 3455678888876 6788999999999653322111 2222222222
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.+++++||..+. +++..|+.++..+
T Consensus 151 --l~f~EtSAl~~t--------------NVe~aF~~~l~~I 175 (222)
T KOG0087|consen 151 --LFFLETSALDAT--------------NVEKAFERVLTEI 175 (222)
T ss_pred --ceEEEecccccc--------------cHHHHHHHHHHHH
Confidence 348999999998 8887777766554
No 267
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.52 E-value=1.3e-13 Score=153.85 Aligned_cols=155 Identities=26% Similarity=0.373 Sum_probs=119.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch------H
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------G 134 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------~ 134 (662)
..||++|.+|+|||||+|+|++. +....+..|.|+..+...+.++++.+.++|.||.-++. .
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~------------~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~ 71 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGA------------NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEK 71 (653)
T ss_pred ceEEEecCCCccHHHHHHHHhcc------------CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCchHH
Confidence 35999999999999999999986 44556678999999999999999999999999976543 1
Q ss_pred HHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 135 EVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 135 ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
-+.+++ ...|.+|-|+||.. ......+.-++.+.|.|+|+++|++|.... .-+.-+...+-+.+|
T Consensus 72 Var~~ll~~~~D~ivnVvDAtn--LeRnLyltlQLlE~g~p~ilaLNm~D~A~~-----~Gi~ID~~~L~~~LG------ 138 (653)
T COG0370 72 VARDFLLEGKPDLIVNVVDATN--LERNLYLTLQLLELGIPMILALNMIDEAKK-----RGIRIDIEKLSKLLG------ 138 (653)
T ss_pred HHHHHHhcCCCCEEEEEcccch--HHHHHHHHHHHHHcCCCeEEEeccHhhHHh-----cCCcccHHHHHHHhC------
Confidence 222333 35699999999986 556667778888999999999999997321 111111222223333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
+|++++||++|. |+++|++.+.+..+..
T Consensus 139 -vPVv~tvA~~g~--------------G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 139 -VPVVPTVAKRGE--------------GLEELKRAIIELAESK 166 (653)
T ss_pred -CCEEEEEeecCC--------------CHHHHHHHHHHhcccc
Confidence 689999999998 9999999998876654
No 268
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.51 E-value=8.1e-14 Score=126.32 Aligned_cols=159 Identities=21% Similarity=0.243 Sum_probs=117.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+.....|+|.+|+|||+|+-++....+..++-.++ |+........+.....+++||||.|++.|...+..
T Consensus 7 hLfkllIigDsgVGKssLl~rF~ddtFs~sYitTi----------GvDfkirTv~i~G~~VkLqIwDtAGqErFrtitst 76 (198)
T KOG0079|consen 7 HLFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTI----------GVDFKIRTVDINGDRVKLQIWDTAGQERFRTITST 76 (198)
T ss_pred HHHHHHeecCCcccHHHHHHHHhhcccccceEEEe----------eeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHH
Confidence 45678899999999999999998775544433222 55555555555556689999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCch-hhHHHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+..+++++|+|.+.|.. ..-..|++.++.. .+|-++|.||.|.++.+... .++...+....| +.
T Consensus 77 yyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~----t~dAr~~A~~mg-------ie 145 (198)
T KOG0079|consen 77 YYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVD----TEDARAFALQMG-------IE 145 (198)
T ss_pred HccCCceEEEEEECcchhhhHhHHHHHHHHHhcCccccceecccCCCCccceeee----hHHHHHHHHhcC-------ch
Confidence 9999999999999888755 4556677777654 57889999999987643211 122233333344 34
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.|++||+... ++++.|..|.+.+
T Consensus 146 ~FETSaKe~~--------------NvE~mF~cit~qv 168 (198)
T KOG0079|consen 146 LFETSAKENE--------------NVEAMFHCITKQV 168 (198)
T ss_pred heehhhhhcc--------------cchHHHHHHHHHH
Confidence 7999999998 8888888887654
No 269
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.51 E-value=1.5e-13 Score=124.13 Aligned_cols=107 Identities=26% Similarity=0.272 Sum_probs=81.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc---------
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF--------- 132 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF--------- 132 (662)
.|+|+|.+|+|||||+++|+... ........+.|.......+.+++..+.|+||||..+-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-----------~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~~~~ 69 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-----------LAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDNDGKE 69 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-----------SSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhccc-----------cccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHHHHH
Confidence 48999999999999999999642 1123333466666655667788999999999997542
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEecc
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNK 180 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNK 180 (662)
...+.+.+..+|++++|+|+.+....+...+++++. .+.|+++|+||
T Consensus 70 ~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 70 IRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp HHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 224556668899999999988744555667777775 88999999998
No 270
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.51 E-value=3.2e-13 Score=124.95 Aligned_cols=157 Identities=20% Similarity=0.278 Sum_probs=111.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+-.+|.|+|..|+||||++++|+... ....... ......++.++++.++|||..|+..+..-+..
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~-----------~~~i~pt----~gf~Iktl~~~~~~L~iwDvGGq~~lr~~W~n 79 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGED-----------TDTISPT----LGFQIKTLEYKGYTLNIWDVGGQKTLRSYWKN 79 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCC-----------ccccCCc----cceeeEEEEecceEEEEEEcCCcchhHHHHHH
Confidence 34579999999999999999999872 2222222 33445567889999999999999999999999
Q ss_pred HHhhcceEEEEeeCCCC-chhhHHHHHHHHH----HcCCCcEEEeccCCCCCCC-HHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 139 VVGMVEGAILVVDAGEG-PLAQTKFVLAKAL----KYGLRPILLLNKVDRPAVS-EERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G-~~~qt~~~l~~~~----~~~lp~IvviNKiD~~~~~-~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
++..+|+.|+|||..+. .+.++...++.+. ..|.|++|+.||.|.+++- .+.+..+ -++.+++ ...
T Consensus 80 YfestdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~-~~L~~l~-------ks~ 151 (185)
T KOG0073|consen 80 YFESTDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKA-LDLEELA-------KSH 151 (185)
T ss_pred hhhccCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCHHHHHHh-hCHHHhc-------ccc
Confidence 99999999999997653 3444554444443 3478999999999997532 2111111 1222222 223
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+++++-|||.+|. ++.+=++++++.+
T Consensus 152 ~~~l~~cs~~tge--------------~l~~gidWL~~~l 177 (185)
T KOG0073|consen 152 HWRLVKCSAVTGE--------------DLLEGIDWLCDDL 177 (185)
T ss_pred CceEEEEeccccc--------------cHHHHHHHHHHHH
Confidence 5889999999998 6666666666543
No 271
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.50 E-value=7.4e-14 Score=129.46 Aligned_cols=137 Identities=23% Similarity=0.235 Sum_probs=96.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCC----CccchHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG----HADFGGEV 136 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPG----h~dF~~ev 136 (662)
++|.+||.+++|||||+++|.+.... ..+.-.+.|. =++||||| +..|....
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~---------------------~~KTq~i~~~---~~~IDTPGEyiE~~~~y~aL 57 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR---------------------YKKTQAIEYY---DNTIDTPGEYIENPRFYHAL 57 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC---------------------cCccceeEec---ccEEECChhheeCHHHHHHH
Confidence 47999999999999999999875210 1111223332 25699999 45566666
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
......||.+++|.||++....- --..+..++.|+|=||||+|+... ... .+....++...|+.. +
T Consensus 58 i~ta~dad~V~ll~dat~~~~~~---pP~fa~~f~~pvIGVITK~Dl~~~-~~~----i~~a~~~L~~aG~~~------i 123 (143)
T PF10662_consen 58 IVTAQDADVVLLLQDATEPRSVF---PPGFASMFNKPVIGVITKIDLPSD-DAN----IERAKKWLKNAGVKE------I 123 (143)
T ss_pred HHHHhhCCEEEEEecCCCCCccC---CchhhcccCCCEEEEEECccCccc-hhh----HHHHHHHHHHcCCCC------e
Confidence 66777899999999998753211 112344567899999999999731 222 233445566667753 7
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
|++|+.+|. |+++|.+.|.
T Consensus 124 f~vS~~~~e--------------Gi~eL~~~L~ 142 (143)
T PF10662_consen 124 FEVSAVTGE--------------GIEELKDYLE 142 (143)
T ss_pred EEEECCCCc--------------CHHHHHHHHh
Confidence 999999999 9999999874
No 272
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.50 E-value=3.3e-13 Score=133.64 Aligned_cols=164 Identities=15% Similarity=0.075 Sum_probs=97.7
Q ss_pred cEEEEEeCCCCCHHHHHHH-HHHhcCC-----CCCccccc--cccccccccceeEeee-EEEEEecCeeEEEEeCCCCcc
Q 006068 61 RNVAVIAHVDHGKTTLMDR-LLRQCGA-----DIPHERAM--DSISLERERGITIASK-VTGISWRENELNMVDTPGHAD 131 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~-Ll~~~g~-----~~~~~~v~--D~~~~E~ergiTi~~~-~~~~~~~~~~iniIDTPGh~d 131 (662)
.+|+++|..++|||||+.+ +...... ..+..++. |.... ......+ ...+....+.++||||+|+.+
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~----~~~~~~~~~~~~~~~~v~l~iwDTaG~~~ 78 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRV----CQEVLERSRDVVDGVSVSLRLWDTFGDHD 78 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeE----EeeeccccceeeCCEEEEEEEEeCCCChh
Confidence 4899999999999999964 4332111 11111210 10000 0000000 001223357899999999875
Q ss_pred chHHHHHHHhhcceEEEEeeCCCCchhhHH-H-HHHHHHH--cCCCcEEEeccCCCCCCCHHH---------------HH
Q 006068 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTK-F-VLAKALK--YGLRPILLLNKVDRPAVSEER---------------CD 192 (662)
Q Consensus 132 F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~-~-~l~~~~~--~~lp~IvviNKiD~~~~~~~~---------------~~ 192 (662)
+ ....+++.+|++|+|+|..+....+.. . |+..+.. .+.|+|+|.||+|+...+... ..
T Consensus 79 ~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~ 156 (195)
T cd01873 79 K--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADI 156 (195)
T ss_pred h--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCc
Confidence 3 233467899999999998876544433 2 4444443 367899999999985421100 00
Q ss_pred HHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 193 EVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 193 ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
-..++...+...+| ++++++||++|. |++++|+.+++.
T Consensus 157 V~~~e~~~~a~~~~-------~~~~E~SAkt~~--------------~V~e~F~~~~~~ 194 (195)
T cd01873 157 LPPETGRAVAKELG-------IPYYETSVVTQF--------------GVKDVFDNAIRA 194 (195)
T ss_pred cCHHHHHHHHHHhC-------CEEEEcCCCCCC--------------CHHHHHHHHHHh
Confidence 01123334444444 469999999999 999999998753
No 273
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.50 E-value=3.3e-13 Score=133.88 Aligned_cols=167 Identities=15% Similarity=0.198 Sum_probs=104.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCccchHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
.+|+|+|.+|+|||||+|+|++........... +. ...|.... .+.. ....+.+|||||+.++......+
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~-~~------~~~t~~~~--~~~~~~~~~l~l~DtpG~~~~~~~~~~~ 72 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPT-GV------VETTMKRT--PYPHPKFPNVTLWDLPGIGSTAFPPDDY 72 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCcccc-Cc------cccccCce--eeecCCCCCceEEeCCCCCcccCCHHHH
Confidence 479999999999999999999753211110000 00 00111111 1111 13479999999987653333333
Q ss_pred -----HhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCH-----------HHHHHHHHHHHHHHH
Q 006068 140 -----VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE-----------ERCDEVESLVFDLFA 203 (662)
Q Consensus 140 -----l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~-----------~~~~ei~~~v~~l~~ 203 (662)
+..+|.+++|.| +........+++.+.+.+.|+++|+||+|+...+. .-..++.+.+...+.
T Consensus 73 l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~ 150 (197)
T cd04104 73 LEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ 150 (197)
T ss_pred HHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence 345787777754 44666777788888888999999999999843222 112223333444444
Q ss_pred hcCCCCcCCCccEEEcccc--cCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 204 NLGATDEQLDFPVLYASAK--EGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~--~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
..+.. ..||+.+|+. .++ ++..|.+++...+|...
T Consensus 151 ~~~~~----~p~v~~vS~~~~~~~--------------~~~~l~~~~~~~l~~~~ 187 (197)
T cd04104 151 EAGVS----EPPVFLVSNFDPSDY--------------DFPKLRETLLKDLPAHK 187 (197)
T ss_pred HcCCC----CCCEEEEeCCChhhc--------------ChHHHHHHHHHHhhHHH
Confidence 33322 2368999998 566 89999999999998653
No 274
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=4.9e-13 Score=121.80 Aligned_cols=147 Identities=21% Similarity=0.193 Sum_probs=108.1
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
+-..++.++|+.|.|||.|+.++...... ++....-|+.+.+....+-.+..+++||||.|++.|..-..
T Consensus 7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfk----------DdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtR 76 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTGKSCLLHQFIENKFK----------DDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTR 76 (214)
T ss_pred hhhheeEEeccCCCChhHHHHHHHHhhhc----------ccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHH
Confidence 34689999999999999999999987432 22233347777777777777788999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHcCCC---cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKYGLR---PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~~lp---~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+-|++||+|++..-.... -.|+..++.+--| +|++.||-|+...+...+.+.. .+..+ . .
T Consensus 77 sYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs----~FaqE-----n--e 145 (214)
T KOG0086|consen 77 SYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEAS----RFAQE-----N--E 145 (214)
T ss_pred HHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcChhhhhhHHHHH----hhhcc-----c--c
Confidence 99999999999999876544333 3466666666444 5667899999765543333322 11111 1 1
Q ss_pred ccEEEcccccCc
Q 006068 214 FPVLYASAKEGW 225 (662)
Q Consensus 214 ~Pvi~~SA~~g~ 225 (662)
.-++.+||++|.
T Consensus 146 l~flETSa~TGe 157 (214)
T KOG0086|consen 146 LMFLETSALTGE 157 (214)
T ss_pred eeeeeecccccc
Confidence 347899999998
No 275
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.46 E-value=1.6e-12 Score=129.28 Aligned_cols=114 Identities=18% Similarity=0.172 Sum_probs=81.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE-----ecCeeEEEEeCCCCccchHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-----WRENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~-----~~~~~iniIDTPGh~dF~~ev 136 (662)
+|+++|..++|||||+++++..........++ |.++..+...+. -+.+.++||||+|+.+|....
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Ti----------g~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~ 71 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGRPSWTV----------GCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTR 71 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCCCCcce----------eeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHH
Confidence 69999999999999999999764332221111 323333222221 124689999999999999888
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH----------------------cCCCcEEEeccCCCCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK----------------------YGLRPILLLNKVDRPA 185 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~----------------------~~lp~IvviNKiD~~~ 185 (662)
..+++.+|++|+|+|.++....+.. .|+..+.. .++|+|+|.||+|+..
T Consensus 72 ~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 72 AVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred HHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 8899999999999998876554444 34445543 2589999999999854
No 276
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.46 E-value=4.6e-13 Score=136.35 Aligned_cols=155 Identities=21% Similarity=0.372 Sum_probs=113.0
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCee-EEEEeCCCCcc-----
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENE-LNMVDTPGHAD----- 131 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~-iniIDTPGh~d----- 131 (662)
+.+.+|++||-+|+|||||+++|... +.......-+|+......+.|+++. +.+-|.||...
T Consensus 194 KsiadvGLVG~PNAGKSTLL~als~A------------KpkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~n 261 (366)
T KOG1489|consen 194 KSIADVGLVGFPNAGKSTLLNALSRA------------KPKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMN 261 (366)
T ss_pred eeecccceecCCCCcHHHHHHHhhcc------------CCcccccceeeeccccceeeccccceeEeccCcccccccccc
Confidence 34678999999999999999999876 2334444577888888888898876 99999999543
Q ss_pred --chHHHHHHHhhcceEEEEeeCCCC----chhhHHHHHHHHHHc-----CCCcEEEeccCCCCCCCHHHHHHHHHHHHH
Q 006068 132 --FGGEVERVVGMVEGAILVVDAGEG----PLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFD 200 (662)
Q Consensus 132 --F~~ev~~~l~~aD~aIlVVDa~~G----~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~ 200 (662)
.+....+.+..|+..++|||...+ +..|-..+|..+..+ ..|.+||+||+|.+++.. .. +..
T Consensus 262 kGlG~~FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~----~~---l~~ 334 (366)
T KOG1489|consen 262 KGLGYKFLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEK----NL---LSS 334 (366)
T ss_pred CcccHHHHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHHH----HH---HHH
Confidence 455677888889999999998766 334444455555444 457899999999853221 11 233
Q ss_pred HHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 201 LFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 201 l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
+...+.-. -|+++||++++ |+.+|++.|.+.
T Consensus 335 L~~~lq~~------~V~pvsA~~~e--------------gl~~ll~~lr~~ 365 (366)
T KOG1489|consen 335 LAKRLQNP------HVVPVSAKSGE--------------GLEELLNGLREL 365 (366)
T ss_pred HHHHcCCC------cEEEeeecccc--------------chHHHHHHHhhc
Confidence 33333221 28999999998 999999987543
No 277
>PLN00023 GTP-binding protein; Provisional
Probab=99.43 E-value=2.3e-12 Score=134.91 Aligned_cols=139 Identities=17% Similarity=0.184 Sum_probs=91.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE-------------ecCeeEEEEe
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-------------WRENELNMVD 125 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~-------------~~~~~iniID 125 (662)
...+|+|+|+.++|||||+.+|+..........++ |.++..+...+. .+.+.++|||
T Consensus 20 ~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTI----------G~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWD 89 (334)
T PLN00023 20 GQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTI----------GCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWD 89 (334)
T ss_pred cceEEEEECCCCCcHHHHHHHHhcCCcccccCCce----------eeeEEEEEEEECCcccccccccccCCceEEEEEEE
Confidence 45689999999999999999999764322221111 333332322221 1236799999
Q ss_pred CCCCccchHHHHHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHHc---------------CCCcEEEeccCCCCCCCHH
Q 006068 126 TPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---------------GLRPILLLNKVDRPAVSEE 189 (662)
Q Consensus 126 TPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~---------------~lp~IvviNKiD~~~~~~~ 189 (662)
|+|+..|......+++.+|++|+|+|..+.-... ...|+..+... ++|+|||.||+|+...+..
T Consensus 90 TAGqErfrsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~ 169 (334)
T PLN00023 90 VSGHERYKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT 169 (334)
T ss_pred CCCChhhhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc
Confidence 9999999999999999999999999987743333 33455555543 3789999999998542210
Q ss_pred HH--HHHHHHHHHHHHhcCC
Q 006068 190 RC--DEVESLVFDLFANLGA 207 (662)
Q Consensus 190 ~~--~ei~~~v~~l~~~~g~ 207 (662)
+. ....++..++....|+
T Consensus 170 r~~s~~~~e~a~~~A~~~g~ 189 (334)
T PLN00023 170 RGSSGNLVDAARQWVEKQGL 189 (334)
T ss_pred cccccccHHHHHHHHHHcCC
Confidence 10 1123445555555554
No 278
>cd03700 eEF2_snRNP_like_II EF2_snRNP_like_II: this subfamily represents domain II of elongation factor (EF) EF-2 found eukaryotes and archaea and, the C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. This translocation step is catalyzed by EF-2_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p.
Probab=99.42 E-value=8.4e-13 Score=114.74 Aligned_cols=89 Identities=29% Similarity=0.335 Sum_probs=75.6
Q ss_pred ceeEEEeeeeec-ccceEEEEEEeeceeccCCEEEEeeccCC--CCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc
Q 006068 263 FQMLVTMMEKDF-YLGRILTGRVSSGVVSVGDKVHGLRITDS--GTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (662)
Q Consensus 263 ~~~~V~~~~~~~-~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~--~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~ 339 (662)
+.++|||+.+++ +.|+++++|||+|+|+.|+.|++...+.. ........+|.+|+.+.|.++.++++|.|||||+|.
T Consensus 1 ~v~~v~Ki~~~~~~~g~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~v~~a~aGdIv~i~ 80 (93)
T cd03700 1 LVMYVTKMVPTPDKGGFIAFGRVFSGTIRKGQKVRVLGPNYSPEDEEDLSKKTIQRLYLMMGRYREPVDEVPAGNIVLIV 80 (93)
T ss_pred CeEEEEeCeECCCCCEEEEEEEEeeCeEeCCCEEEEECCCCCCCccCcEEEEEEeEEEEEcCCCEEEccccCCCCEEEEE
Confidence 467899999999 99999999999999999999988753210 000234678999999999999999999999999999
Q ss_pred CcCCCccCceee
Q 006068 340 GMTKPSIGHTVA 351 (662)
Q Consensus 340 gl~~~~~GdTl~ 351 (662)
|++++.+|||.+
T Consensus 81 g~~~~~~g~~~~ 92 (93)
T cd03700 81 GLDQLKSGTTAT 92 (93)
T ss_pred CCccCceEeEec
Confidence 999999999854
No 279
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=99.42 E-value=1.3e-12 Score=113.76 Aligned_cols=88 Identities=20% Similarity=0.199 Sum_probs=73.3
Q ss_pred ceeEEEeeeeeccc-ceEEEEEEeeceeccCCEEEEeeccCCC--CcceEEeEEEeEEeecCCceeeecccCCCCEEEEc
Q 006068 263 FQMLVTMMEKDFYL-GRILTGRVSSGVVSVGDKVHGLRITDSG--TEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (662)
Q Consensus 263 ~~~~V~~~~~~~~~-G~i~~gRV~sG~l~~Gd~V~~~~~~~~~--~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~ 339 (662)
+.++|||+.++++. |+++++|||||+|++||.|++...+... ......++|.+|+.+.|.++.++++|.|||||++.
T Consensus 1 ~~a~VfK~~~~~~~~~~la~~RV~sGtl~~g~~v~~~~~~~~~~~~~~~~~~~i~~l~~~~g~~~~~v~~a~aGdIv~v~ 80 (94)
T cd04090 1 LVVHVTKLYSTSDGGSFWAFGRIYSGTIKKGQKVKVLGENYSLDDEEDMTICTIGRLWILGGRYKIEVNEAPAGNWVLIK 80 (94)
T ss_pred CEEEEEeeeecCCCCEEEEEEEEeeCeEcCCCEEEEECCCCCCccCCcEEEEEEeEEEEecCCCEEEcceeCCCCEEEEE
Confidence 46899999999998 7799999999999999999886432000 00234689999999999999999999999999999
Q ss_pred CcCCCccCcee
Q 006068 340 GMTKPSIGHTV 350 (662)
Q Consensus 340 gl~~~~~GdTl 350 (662)
|+++..++.+.
T Consensus 81 gl~~~~~~~~t 91 (94)
T cd04090 81 GIDSSIVKTAT 91 (94)
T ss_pred CcchheeceEE
Confidence 99988777654
No 280
>PRK09866 hypothetical protein; Provisional
Probab=99.41 E-value=4.7e-12 Score=140.90 Aligned_cols=116 Identities=17% Similarity=0.238 Sum_probs=84.6
Q ss_pred CeeEEEEeCCCCcc-----chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcC--CCcEEEeccCCCCCCCHHH
Q 006068 118 ENELNMVDTPGHAD-----FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG--LRPILLLNKVDRPAVSEER 190 (662)
Q Consensus 118 ~~~iniIDTPGh~d-----F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~--lp~IvviNKiD~~~~~~~~ 190 (662)
..++.|+||||... +...+..++..+|.+|+|+|+..+.....+.+++.+.+.+ .|+++|+||+|+.+.....
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreedd 308 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSDD 308 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccch
Confidence 36899999999643 3445667899999999999999988888888888888877 4999999999985322111
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 191 ~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
.+.+.+.+...+...+... -.++++||+.|. |++.|++.|.++
T Consensus 309 kE~Lle~V~~~L~q~~i~f----~eIfPVSAlkG~--------------nid~LLdeI~~~ 351 (741)
T PRK09866 309 ADQVRALISGTLMKGCITP----QQIFPVSSMWGY--------------LANRARHELANN 351 (741)
T ss_pred HHHHHHHHHHHHHhcCCCC----ceEEEEeCCCCC--------------CHHHHHHHHHhC
Confidence 2333333333333222211 139999999999 999999999875
No 281
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.41 E-value=4.5e-12 Score=125.52 Aligned_cols=167 Identities=18% Similarity=0.207 Sum_probs=107.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG------ 134 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~------ 134 (662)
+||+++|.+|+|||||+|+|++..... .....++.|.........+.+.++++|||||..++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~----------~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~ 70 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFE----------SKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLS 70 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccc----------cccCCCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHH
Confidence 589999999999999999999763211 1112346777777777888999999999999887631
Q ss_pred -HHHHHH----hhcceEEEEeeCCCCchhhHHHHHHHHHHc-C----CCcEEEeccCCCCCCC-HHHHHH-HHHHHHHHH
Q 006068 135 -EVERVV----GMVEGAILVVDAGEGPLAQTKFVLAKALKY-G----LRPILLLNKVDRPAVS-EERCDE-VESLVFDLF 202 (662)
Q Consensus 135 -ev~~~l----~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~-~----lp~IvviNKiD~~~~~-~~~~~e-i~~~v~~l~ 202 (662)
+..+.+ ..+|++|+|+|+.. ........++.+.+. | .++|+++|+.|..... .+.+.. ....+..++
T Consensus 71 ~~i~~~~~~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~ 149 (196)
T cd01852 71 KEIVRCLSLSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLL 149 (196)
T ss_pred HHHHHHHHhcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHH
Confidence 222222 34689999999987 777777777777653 3 4678999999975432 211111 113344444
Q ss_pred HhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
...+.. ++..+.+.- ......++.+|++.|.+.++.
T Consensus 150 ~~c~~r-------~~~f~~~~~---------~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 150 EKCGGR-------YVAFNNKAK---------GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HHhCCe-------EEEEeCCCC---------cchhHHHHHHHHHHHHHHHHh
Confidence 443321 222222110 001122899999999887764
No 282
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=4.6e-12 Score=130.27 Aligned_cols=142 Identities=21% Similarity=0.261 Sum_probs=95.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF------ 132 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF------ 132 (662)
..++|+|.|++|+|||||+.++... .......+-+|-.....+++++..++++|||||.-|-
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT~A------------kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN 234 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLTTA------------KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERN 234 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHhcC------------CCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhc
Confidence 5789999999999999999999876 2233344556666778889999999999999998762
Q ss_pred --hHHHHHHHhh-cceEEEEeeCCC--C--chhhHHHHHHHH-HHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 133 --GGEVERVVGM-VEGAILVVDAGE--G--PLAQTKFVLAKA-LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 133 --~~ev~~~l~~-aD~aIlVVDa~~--G--~~~qt~~~l~~~-~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
......+|+. .+.+|+++|+.+ | +..|-. +|... ..++.|+++|+||+|. .+++..+++... +..
T Consensus 235 ~IE~qAi~AL~hl~~~IlF~~D~Se~cgy~lE~Q~~-L~~eIk~~f~~p~v~V~nK~D~--~~~e~~~~~~~~----~~~ 307 (346)
T COG1084 235 EIERQAILALRHLAGVILFLFDPSETCGYSLEEQIS-LLEEIKELFKAPIVVVINKIDI--ADEEKLEEIEAS----VLE 307 (346)
T ss_pred HHHHHHHHHHHHhcCeEEEEEcCccccCCCHHHHHH-HHHHHHHhcCCCeEEEEecccc--cchhHHHHHHHH----HHh
Confidence 1233345554 466889999765 3 233433 44444 3457789999999998 445444444333 222
Q ss_pred cCCCCcCCCccEEEcccccCc
Q 006068 205 LGATDEQLDFPVLYASAKEGW 225 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~ 225 (662)
.|..+ .+.+|+..+.
T Consensus 308 ~~~~~------~~~~~~~~~~ 322 (346)
T COG1084 308 EGGEE------PLKISATKGC 322 (346)
T ss_pred hcccc------ccceeeeehh
Confidence 23221 3566677666
No 283
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.39 E-value=2.9e-11 Score=126.04 Aligned_cols=142 Identities=18% Similarity=0.225 Sum_probs=94.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchH---
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGG--- 134 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~--- 134 (662)
..||+++|++|+|||||+++|+.......... . +.......+.+++......+..++ .+++||||||+.|+..
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~-~-~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYP-P-DPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCC-C-CccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 36999999999999999999987643211100 0 001112233444555555566666 5799999999877632
Q ss_pred ------------------HHHHHHh-------hcceEEEEeeCC-CCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCH
Q 006068 135 ------------------EVERVVG-------MVEGAILVVDAG-EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE 188 (662)
Q Consensus 135 ------------------ev~~~l~-------~aD~aIlVVDa~-~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~ 188 (662)
+..+..+ .+|++++++++. .++.+.+..+++.+.. ++|+|+|+||+|+. ..
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l--~~ 158 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTL--TP 158 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcC--CH
Confidence 1111122 368899999976 4788888888888875 89999999999994 34
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 006068 189 ERCDEVESLVFDLFANLG 206 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g 206 (662)
.+.....+.+.+.+...+
T Consensus 159 ~e~~~~k~~i~~~l~~~~ 176 (276)
T cd01850 159 EELKEFKQRIMEDIEEHN 176 (276)
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 444555666666666554
No 284
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.38 E-value=1.6e-12 Score=117.95 Aligned_cols=155 Identities=23% Similarity=0.287 Sum_probs=110.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
.+.++|-.++|||||++......+.+. -+-|+......+.-.+..+.+||.||+..|...++++.+
T Consensus 22 el~lvGLq~sGKtt~Vn~ia~g~~~ed--------------miptvGfnmrk~tkgnvtiklwD~gGq~rfrsmWerycR 87 (186)
T KOG0075|consen 22 ELSLVGLQNSGKTTLVNVIARGQYLED--------------MIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMWERYCR 87 (186)
T ss_pred eEEEEeeccCCcceEEEEEeeccchhh--------------hcccccceeEEeccCceEEEEEecCCCccHHHHHHHHhh
Confidence 689999999999999998875432211 133334444555556788999999999999999999999
Q ss_pred hcceEEEEeeCCCCc-hhhHH----HHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc-CCCcc
Q 006068 142 MVEGAILVVDAGEGP-LAQTK----FVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE-QLDFP 215 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~-~~qt~----~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~-~~~~P 215 (662)
.++++++||||.+.- ....+ .++....-.|+|++|..||.|++++-.. .++..++|..+- .-++-
T Consensus 88 ~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~---------~~li~rmgL~sitdREvc 158 (186)
T KOG0075|consen 88 GVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK---------IALIERMGLSSITDREVC 158 (186)
T ss_pred cCcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH---------HHHHHHhCccccccceEE
Confidence 999999999987632 12222 2333334458999999999999876331 122333444321 12355
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.+.+|+++.. +++.++++|++|-.
T Consensus 159 C~siScke~~--------------Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 159 CFSISCKEKV--------------NIDITLDWLIEHSK 182 (186)
T ss_pred EEEEEEcCCc--------------cHHHHHHHHHHHhh
Confidence 7889999988 99999999998753
No 285
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.38 E-value=4.8e-12 Score=127.36 Aligned_cols=165 Identities=19% Similarity=0.319 Sum_probs=114.6
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEee-eEEEEEecCeeEEEEeCCCCcc----
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIAS-KVTGISWRENELNMVDTPGHAD---- 131 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~-~~~~~~~~~~~iniIDTPGh~d---- 131 (662)
.....||.|+|..|+|||||+|+|+........ .-|++... ......+++..++||||||..|
T Consensus 36 ~~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~------------~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~ 103 (296)
T COG3596 36 EKEPVNVLLMGATGAGKSSLINALFQGEVKEVS------------KVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK 103 (296)
T ss_pred ccCceeEEEecCCCCcHHHHHHHHHhccCceee------------ecccCCCchhhHHhhccccceEEecCCCcccchhh
Confidence 345679999999999999999999954221100 00111111 1112245678999999999887
Q ss_pred ---chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcC--CCcEEEeccCCCCCC----CH------HHHHHH--
Q 006068 132 ---FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG--LRPILLLNKVDRPAV----SE------ERCDEV-- 194 (662)
Q Consensus 132 ---F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~--lp~IvviNKiD~~~~----~~------~~~~ei-- 194 (662)
+...+...+...|.+++++|+.+....-+...|+.....+ .+.+++||.+|+..- +. ....+.
T Consensus 104 D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~ 183 (296)
T COG3596 104 DAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIE 183 (296)
T ss_pred hHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHH
Confidence 5566778899999999999999987777777777766554 588999999998431 11 011111
Q ss_pred --HHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 195 --ESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 195 --~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
.+.+.++|.. --|++++|+..+| |++.|+.+++..+|.-
T Consensus 184 ~k~~~~~~~~q~--------V~pV~~~~~r~~w--------------gl~~l~~ali~~lp~e 224 (296)
T COG3596 184 EKAEALGRLFQE--------VKPVVAVSGRLPW--------------GLKELVRALITALPVE 224 (296)
T ss_pred HHHHHHHHHHhh--------cCCeEEeccccCc--------------cHHHHHHHHHHhCccc
Confidence 1222333332 2489999999999 9999999999999854
No 286
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.37 E-value=5.6e-12 Score=129.14 Aligned_cols=85 Identities=22% Similarity=0.310 Sum_probs=68.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------c
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------F 132 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d-------F 132 (662)
.-.|+++|.+++|||||+++|++.. .......-+|......-++|++.+|+|+|+||... -
T Consensus 63 da~v~lVGfPsvGKStLL~~LTnt~------------seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr 130 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLTNTK------------SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR 130 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHhCCC------------ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC
Confidence 4589999999999999999998762 22223345667777788999999999999999543 2
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCc
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGP 156 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~ 156 (662)
+.++....+.||.+++|+|+.+..
T Consensus 131 G~~vlsv~R~ADlIiiVld~~~~~ 154 (365)
T COG1163 131 GRQVLSVARNADLIIIVLDVFEDP 154 (365)
T ss_pred cceeeeeeccCCEEEEEEecCCCh
Confidence 467888999999999999998654
No 287
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.36 E-value=9.9e-12 Score=124.68 Aligned_cols=166 Identities=21% Similarity=0.212 Sum_probs=106.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEe-eeEEEEEec-CeeEEEEeCCCCccchHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIA-SKVTGISWR-ENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~-~~~~~~~~~-~~~iniIDTPGh~dF~~ev~~ 138 (662)
.+|+++|..|+|||||+++|........... .+... .......+. ..++.+|||+|+.+|...+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~------------t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~ 73 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPP------------TIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPE 73 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCCC------------ceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHH
Confidence 6899999999999999999998744322221 11111 111111111 467999999999999999999
Q ss_pred HHhhcceEEEEeeCCC--CchhhHHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHH-----HHHHHhcCCC
Q 006068 139 VVGMVEGAILVVDAGE--GPLAQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLV-----FDLFANLGAT 208 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~--G~~~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v-----~~l~~~~g~~ 208 (662)
+...++++++|+|... ....-+..+...+... +.|++++.||+|+....... ..+.+.. ..........
T Consensus 74 y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 152 (219)
T COG1100 74 YYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSS-EEILNQLNREVVLLVLAPKAVL 152 (219)
T ss_pred HhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHH-HHHHhhhhcCcchhhhHhHHhh
Confidence 9999999999999764 4455566666666664 48999999999997654321 1111110 0000000000
Q ss_pred CcCCCccEEEcccc--cCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 209 DEQLDFPVLYASAK--EGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~--~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.......++.+|++ .+. ++..++..+...+.
T Consensus 153 ~~~~~~~~~~~s~~~~~~~--------------~v~~~~~~~~~~~~ 185 (219)
T COG1100 153 PEVANPALLETSAKSLTGP--------------NVNELFKELLRKLL 185 (219)
T ss_pred hhhcccceeEeecccCCCc--------------CHHHHHHHHHHHHH
Confidence 00011227899999 776 88888888877664
No 288
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.36 E-value=5.6e-12 Score=124.68 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=114.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|..|+|||+|+-+++...+...+..++-|+ ..+...+......+.|+||+|+.+|......+
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~-----------y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~ 71 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDS-----------YRKELTVDGEVCMLEILDTAGQEEFSAMRDLY 71 (196)
T ss_pred ceEEEEECCCCCCcchheeeecccccccccCCCcccc-----------ceEEEEECCEEEEEEEEcCCCcccChHHHHHh
Confidence 4689999999999999999999887665544444322 33444444445678899999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
++.+|+.++|++.++....+ ...++.++.+ ..+|+++|.||+|+...+... .++...+... ..+
T Consensus 72 ~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~----~eeg~~la~~-------~~~ 140 (196)
T KOG0395|consen 72 IRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVS----EEEGKALARS-------WGC 140 (196)
T ss_pred hccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhccccC----HHHHHHHHHh-------cCC
Confidence 99999999999987754433 3344444422 257999999999996543322 1222333222 246
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+++++||+..+ +++++|..++..+-.
T Consensus 141 ~f~E~Sak~~~--------------~v~~~F~~L~r~~~~ 166 (196)
T KOG0395|consen 141 AFIETSAKLNY--------------NVDEVFYELVREIRL 166 (196)
T ss_pred cEEEeeccCCc--------------CHHHHHHHHHHHHHh
Confidence 79999999998 899999998876544
No 289
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.35 E-value=1.8e-12 Score=117.17 Aligned_cols=113 Identities=25% Similarity=0.256 Sum_probs=76.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+|+|+.|+|||||+++|+..... +........+.++......+......+.+||++|+..|.......+.
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~ 72 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFP--------DNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLK 72 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS----------------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCc--------ccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhh
Confidence 5899999999999999999987432 01111222344455444555555556999999999888776666799
Q ss_pred hcceEEEEeeCCCCch-hhHHHH---HHHHHH--cCCCcEEEeccCC
Q 006068 142 MVEGAILVVDAGEGPL-AQTKFV---LAKALK--YGLRPILLLNKVD 182 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~-~qt~~~---l~~~~~--~~lp~IvviNKiD 182 (662)
.+|++|+|+|..+... .+...+ +..... .++|+|+|.||.|
T Consensus 73 ~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 73 KADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred cCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 9999999999887542 222223 333332 3589999999998
No 290
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.32 E-value=1.7e-11 Score=110.38 Aligned_cols=149 Identities=19% Similarity=0.186 Sum_probs=106.1
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
+..-+.+-.|+|..|+|||.|+.++....+...-.. .-|+.+......+.....+++||||.|++.|...
T Consensus 7 nysyifkyiiigdmgvgkscllhqftekkfmadcph----------tigvefgtriievsgqkiklqiwdtagqerfrav 76 (215)
T KOG0097|consen 7 NYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPH----------TIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAV 76 (215)
T ss_pred chhheEEEEEEccccccHHHHHHHHHHHHHhhcCCc----------ccceecceeEEEecCcEEEEEEeecccHHHHHHH
Confidence 445688999999999999999999988754322111 1244445555566666789999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCch-hhHHHHHHHHHHcCCC---cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPL-AQTKFVLAKALKYGLR---PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~~~lp---~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+++.+.++++|+|.+.... .+...|+..++.+--| ++++.||.|+...+...++ +...+..+.|+
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~ye----eak~faeengl---- 148 (215)
T KOG0097|consen 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYE----EAKEFAEENGL---- 148 (215)
T ss_pred HHHHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhhcccCcHH----HHHHHHhhcCe----
Confidence 9999999999999999765443 3344566666666555 4677899999654332222 33333334443
Q ss_pred CCccEEEcccccCc
Q 006068 212 LDFPVLYASAKEGW 225 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~ 225 (662)
-++.+||++|.
T Consensus 149 ---~fle~saktg~ 159 (215)
T KOG0097|consen 149 ---MFLEASAKTGQ 159 (215)
T ss_pred ---EEEEecccccC
Confidence 37999999998
No 291
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.32 E-value=2.1e-12 Score=118.37 Aligned_cols=158 Identities=17% Similarity=0.142 Sum_probs=107.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
.++|+++|..-+|||||+=++....+....-+++ .-++..+...++-....++||||.|++.|...-.-+
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTl----------QASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY 82 (218)
T KOG0088|consen 13 KFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTL----------QASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY 82 (218)
T ss_pred eeEEEEEcCCccchhHHHHHHHHhhcchhhHHHH----------HHHHhhcccccccceeeeeeeeccchHhhhccCceE
Confidence 5789999999999999999998775432211111 111222333333345679999999999997666667
Q ss_pred HhhcceEEEEeeCCCCchhhHHH-HHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPLAQTKF-VLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++.+||+|||+|.++.-..|-.. |...++. ..+.+++|.||+|+...+.. ..++...+....|+.
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V----t~qeAe~YAesvGA~------- 151 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQV----TRQEAEAYAESVGAL------- 151 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHhhhh----hHHHHHHHHHhhchh-------
Confidence 89999999999988876666554 3344433 24567899999998543221 223333344444543
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.+.+||+.+. |+.+||+.+...+
T Consensus 152 y~eTSAk~N~--------------Gi~elFe~Lt~~M 174 (218)
T KOG0088|consen 152 YMETSAKDNV--------------GISELFESLTAKM 174 (218)
T ss_pred heeccccccc--------------CHHHHHHHHHHHH
Confidence 7899999998 9999998876544
No 292
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.32 E-value=6e-13 Score=118.58 Aligned_cols=153 Identities=22% Similarity=0.250 Sum_probs=108.4
Q ss_pred EEeCCCCCHHHHHHHHHHhcCC-CCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhc
Q 006068 65 VIAHVDHGKTTLMDRLLRQCGA-DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMV 143 (662)
Q Consensus 65 IiGh~~~GKTTLv~~Ll~~~g~-~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~a 143 (662)
++|.++.|||.|+-++-..++. ...-+ .-||....+...+.-+..+++||||.|++.|..-+..+++.+
T Consensus 2 llgds~~gktcllir~kdgafl~~~fis----------tvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda 71 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFLAGNFIS----------TVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDA 71 (192)
T ss_pred ccccCccCceEEEEEeccCceecCceee----------eeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhccc
Confidence 6899999999998665433221 11111 226777777777777778999999999999999999999999
Q ss_pred ceEEEEeeCCC-CchhhHHHHHHHHHHcC---CCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEc
Q 006068 144 EGAILVVDAGE-GPLAQTKFVLAKALKYG---LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYA 219 (662)
Q Consensus 144 D~aIlVVDa~~-G~~~qt~~~l~~~~~~~---lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~ 219 (662)
|+.+|++|... ..+.....|+.++.+++ +.+.++.||+|+...+....+ +-..+.+..| +|+..+
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~d----dg~kla~~y~-------ipfmet 140 (192)
T KOG0083|consen 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRD----DGEKLAEAYG-------IPFMET 140 (192)
T ss_pred ceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccchhhccccc----hHHHHHHHHC-------CCceec
Confidence 99999999554 45555666777776664 567789999998432211111 1122223333 689999
Q ss_pred ccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 220 SAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 220 SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
||++|. +++..|-+|.+.+
T Consensus 141 saktg~--------------nvd~af~~ia~~l 159 (192)
T KOG0083|consen 141 SAKTGF--------------NVDLAFLAIAEEL 159 (192)
T ss_pred cccccc--------------cHhHHHHHHHHHH
Confidence 999999 8888777777655
No 293
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.31 E-value=5.8e-12 Score=135.10 Aligned_cols=161 Identities=21% Similarity=0.227 Sum_probs=116.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-ch----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-FG---- 133 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d-F~---- 133 (662)
.-.+|||+|.+|+|||||+|+|.+. |......+.|.|.++-.+.++.+|+++.|+||.|... -.
T Consensus 267 ~gl~iaIvGrPNvGKSSLlNaL~~~-----------drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE 335 (531)
T KOG1191|consen 267 SGLQIAIVGRPNVGKSSLLNALSRE-----------DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIE 335 (531)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHhcC-----------CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccCChhH
Confidence 3479999999999999999999988 5667778889999999999999999999999999866 11
Q ss_pred ----HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcC------------CCcEEEeccCCCCCCCHHHHHHHHHH
Q 006068 134 ----GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG------------LRPILLLNKVDRPAVSEERCDEVESL 197 (662)
Q Consensus 134 ----~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~------------lp~IvviNKiD~~~~~~~~~~ei~~~ 197 (662)
......+..+|.+++||||.++.+.+...+.+.+...+ -|.|++.||+|....-.. ....
T Consensus 336 ~~gI~rA~k~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~----~~~~ 411 (531)
T KOG1191|consen 336 ALGIERARKRIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE----MTKI 411 (531)
T ss_pred HHhHHHHHHHHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcccc----ccCC
Confidence 23345677899999999999888888777777776654 356777888887432010 0000
Q ss_pred HHHHHHhcCCCCcCCCcc-EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 198 VFDLFANLGATDEQLDFP-VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 198 v~~l~~~~g~~~~~~~~P-vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
...+....|-. .+| +.++|++++. |...|.+++.+.+
T Consensus 412 ~~~~~~~~~~~----~~~i~~~vs~~tke--------------g~~~L~~all~~~ 449 (531)
T KOG1191|consen 412 PVVYPSAEGRS----VFPIVVEVSCTTKE--------------GCERLSTALLNIV 449 (531)
T ss_pred ceeccccccCc----ccceEEEeeechhh--------------hHHHHHHHHHHHH
Confidence 00001111111 234 4448888887 8999888887654
No 294
>COG2262 HflX GTPases [General function prediction only]
Probab=99.29 E-value=2.3e-11 Score=128.86 Aligned_cols=154 Identities=22% Similarity=0.244 Sum_probs=108.1
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-CeeEEEEeCCCCcc-----
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHAD----- 131 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-~~~iniIDTPGh~d----- 131 (662)
..++.|+++|-.|+|||||+|+|+.. ....+...-.|.+.....+.+. +..+.+-||-|+.+
T Consensus 190 ~~~p~vaLvGYTNAGKSTL~N~LT~~------------~~~~~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~~LP~~ 257 (411)
T COG2262 190 SGIPLVALVGYTNAGKSTLFNALTGA------------DVYVADQLFATLDPTTRRIELGDGRKVLLTDTVGFIRDLPHP 257 (411)
T ss_pred cCCCeEEEEeeccccHHHHHHHHhcc------------CeeccccccccccCceeEEEeCCCceEEEecCccCcccCChH
Confidence 45789999999999999999999854 1122333456677777777776 68999999999765
Q ss_pred ----chHHHHHHHhhcceEEEEeeCCCCc-hhhHHHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH
Q 006068 132 ----FGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (662)
Q Consensus 132 ----F~~ev~~~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~ 203 (662)
|.... .-...+|.++.|||+.+.- ..+-..+...+.+ ..+|+|+|.||+|+..... ....+ .
T Consensus 258 LV~AFksTL-EE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~-----~~~~~----~ 327 (411)
T COG2262 258 LVEAFKSTL-EEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEE-----ILAEL----E 327 (411)
T ss_pred HHHHHHHHH-HHhhcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchh-----hhhhh----h
Confidence 32222 2335689999999988753 3333444455555 4579999999999853211 11111 1
Q ss_pred hcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.. . . +.+++||++|+ |++.|++.|.+.++.
T Consensus 328 ~~-~-----~-~~v~iSA~~~~--------------gl~~L~~~i~~~l~~ 357 (411)
T COG2262 328 RG-S-----P-NPVFISAKTGE--------------GLDLLRERIIELLSG 357 (411)
T ss_pred hc-C-----C-CeEEEEeccCc--------------CHHHHHHHHHHHhhh
Confidence 10 0 1 37999999999 999999999998874
No 295
>PRK13768 GTPase; Provisional
Probab=99.29 E-value=2.3e-11 Score=125.39 Aligned_cols=119 Identities=24% Similarity=0.218 Sum_probs=77.8
Q ss_pred CeeEEEEeCCCCccch---HHH---HHHHhh--cceEEEEeeCCCCchhhHHHHHHHH-----HHcCCCcEEEeccCCCC
Q 006068 118 ENELNMVDTPGHADFG---GEV---ERVVGM--VEGAILVVDAGEGPLAQTKFVLAKA-----LKYGLRPILLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~---~ev---~~~l~~--aD~aIlVVDa~~G~~~qt~~~l~~~-----~~~~lp~IvviNKiD~~ 184 (662)
+..+.+|||||+.++. ... .+.+.. .+.+++|+|+..+..+.+......+ ...++|+++|+||+|..
T Consensus 96 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~ 175 (253)
T PRK13768 96 DADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLL 175 (253)
T ss_pred CCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhc
Confidence 3479999999987642 222 223333 8999999999887766664433322 25799999999999996
Q ss_pred CCCH-HHHHHHHHH---------------------HHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchH
Q 006068 185 AVSE-ERCDEVESL---------------------VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMS 242 (662)
Q Consensus 185 ~~~~-~~~~ei~~~---------------------v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~ 242 (662)
.... +......+. +.+++...+. ..+++++|++++. |++
T Consensus 176 ~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~-----~~~vi~iSa~~~~--------------gl~ 236 (253)
T PRK13768 176 SEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGL-----PVRVIPVSAKTGE--------------GFD 236 (253)
T ss_pred CchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCC-----CCcEEEEECCCCc--------------CHH
Confidence 5322 111111111 1111222221 2468999999998 999
Q ss_pred HHHHHHHhhCCCC
Q 006068 243 QLLDAIIRHVPPP 255 (662)
Q Consensus 243 ~Lld~I~~~lP~p 255 (662)
+|++.|.+++|.-
T Consensus 237 ~L~~~I~~~l~~~ 249 (253)
T PRK13768 237 ELYAAIQEVFCGG 249 (253)
T ss_pred HHHHHHHHHcCCC
Confidence 9999999999763
No 296
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.27 E-value=2e-11 Score=118.25 Aligned_cols=112 Identities=20% Similarity=0.249 Sum_probs=68.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe---cCeeEEEEeCCCCccchHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW---RENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~---~~~~iniIDTPGh~dF~~ev 136 (662)
.+.|.|+|+.|+|||+|+.+|.+.... .|+ .++ .....+.. .+..+.+||+|||..+....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~-----------tS~-e~n~~~~~~~~~~~~~~lvD~PGH~rlr~~~ 66 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTV----PTV-----------TSM-ENNIAYNVNNSKGKKLRLVDIPGHPRLRSKL 66 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS-------B--------------S-SEEEECCGSSTCGTCECEEEETT-HCCCHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcC----Cee-----------ccc-cCCceEEeecCCCCEEEEEECCCcHHHHHHH
Confidence 458999999999999999999987221 111 111 11112222 35689999999999998877
Q ss_pred HHH---HhhcceEEEEeeCCCCchhhHH---HHH-HHH---H--HcCCCcEEEeccCCCCCCCH
Q 006068 137 ERV---VGMVEGAILVVDAGEGPLAQTK---FVL-AKA---L--KYGLRPILLLNKVDRPAVSE 188 (662)
Q Consensus 137 ~~~---l~~aD~aIlVVDa~~G~~~qt~---~~l-~~~---~--~~~lp~IvviNKiD~~~~~~ 188 (662)
... +..+.++|+|||+.. ...+-+ +.+ ..+ . ..++|++|++||.|+..+.+
T Consensus 67 ~~~~~~~~~~k~IIfvvDSs~-~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~ 129 (181)
T PF09439_consen 67 LDELKYLSNAKGIIFVVDSST-DQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKP 129 (181)
T ss_dssp HHHHHHHGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---
T ss_pred HHhhhchhhCCEEEEEEeCcc-chhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCC
Confidence 765 889999999999874 222222 221 111 1 24678899999999987664
No 297
>PTZ00099 rab6; Provisional
Probab=99.27 E-value=3e-11 Score=117.67 Aligned_cols=119 Identities=18% Similarity=0.148 Sum_probs=84.8
Q ss_pred EEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH---cCCCcEEEeccCCCCCCCH
Q 006068 113 GISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSE 188 (662)
Q Consensus 113 ~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~ 188 (662)
.+..+..+++||||||+..|...+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+|+|+||+|+.....
T Consensus 23 ~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~~piilVgNK~DL~~~~~ 102 (176)
T PTZ00099 23 YLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVIIALVGNKTDLGDLRK 102 (176)
T ss_pred EECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccC
Confidence 333345789999999999999999999999999999999987543333 345444443 2567799999999854322
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
.... +...+....+ ++++++||++|. |++++|+.|.+.+|...
T Consensus 103 v~~~----e~~~~~~~~~-------~~~~e~SAk~g~--------------nV~~lf~~l~~~l~~~~ 145 (176)
T PTZ00099 103 VTYE----EGMQKAQEYN-------TMFHETSAKAGH--------------NIKVLFKKIAAKLPNLD 145 (176)
T ss_pred CCHH----HHHHHHHHcC-------CEEEEEECCCCC--------------CHHHHHHHHHHHHHhcc
Confidence 1111 1222222222 358899999999 99999999999987643
No 298
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.26 E-value=6.2e-11 Score=125.82 Aligned_cols=170 Identities=20% Similarity=0.199 Sum_probs=101.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCC---------ccc------cccccccc---cccceeEeeeEEE-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---------HER------AMDSISLE---RERGITIASKVTG------- 113 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---------~~~------v~D~~~~E---~ergiTi~~~~~~------- 113 (662)
+...|+|.|.+|+|||||+++|......... .+. ..|....+ ...+.-+.+....
T Consensus 55 ~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~~~~~~~~~~r~~~~~~~l~~~a 134 (332)
T PRK09435 55 NALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVA 134 (332)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHhhcCCCCeEEEecCCcccccchH
Confidence 4578999999999999999997655321110 011 11221111 1122222221111
Q ss_pred ---------EEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHH--HHHHHHHcCCCcEEEeccCC
Q 006068 114 ---------ISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKF--VLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 114 ---------~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~--~l~~~~~~~lp~IvviNKiD 182 (662)
+...++.+.||||+|..+-. +. +...+|.+++|++...|-.-|... .+.. .-|+|+||+|
T Consensus 135 ~~~~~~~~~~~~~g~d~viieT~Gv~qs~--~~-i~~~aD~vlvv~~p~~gd~iq~~k~gi~E~------aDIiVVNKaD 205 (332)
T PRK09435 135 RKTRETMLLCEAAGYDVILVETVGVGQSE--TA-VAGMVDFFLLLQLPGAGDELQGIKKGIMEL------ADLIVINKAD 205 (332)
T ss_pred HHHHHHHHHHhccCCCEEEEECCCCccch--hH-HHHhCCEEEEEecCCchHHHHHHHhhhhhh------hheEEeehhc
Confidence 11237899999999987432 22 578899999998755554444322 2222 3489999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 183 ~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+.... .......++...+............|++++||++|. |+++|++.|.++++
T Consensus 206 l~~~~--~a~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~--------------GIdeL~~~I~~~~~ 260 (332)
T PRK09435 206 GDNKT--AARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGE--------------GIDEIWQAIEDHRA 260 (332)
T ss_pred ccchh--HHHHHHHHHHHHHhcccccccCCCCCEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 86432 223344444444332211111123589999999998 99999999999876
No 299
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=7.8e-12 Score=114.79 Aligned_cols=162 Identities=19% Similarity=0.171 Sum_probs=107.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec---------CeeEEEEeCCCCc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---------ENELNMVDTPGHA 130 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~---------~~~iniIDTPGh~ 130 (662)
..++..+|.+|+||||++-+.....+....-++| ||....+.....-. ...++||||.|++
T Consensus 9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTV----------GIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQE 78 (219)
T KOG0081|consen 9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTV----------GIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQE 78 (219)
T ss_pred HHHHHhhccCCCCceEEEEEecCCcccceeEEEe----------ecccccceEEEeccCCCCCCcceEEEEeeeccccHH
Confidence 4567789999999999988777654432222222 33333222222111 2578999999999
Q ss_pred cchHHHHHHHhhcceEEEEeeCC-CCchhhHHHHHHHHHHc---CCC-cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006068 131 DFGGEVERVVGMVEGAILVVDAG-EGPLAQTKFVLAKALKY---GLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (662)
Q Consensus 131 dF~~ev~~~l~~aD~aIlVVDa~-~G~~~qt~~~l~~~~~~---~lp-~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~ 205 (662)
.|...+...++.|-|.+|++|-+ +..+-.++.|+.+++.+ .-| +|++.||.|+++.+.. ..++...+..++
T Consensus 79 RFRSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V----s~~qa~~La~ky 154 (219)
T KOG0081|consen 79 RFRSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV----SEDQAAALADKY 154 (219)
T ss_pred HHHHHHHHHHHhhccceEEEeccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhhhhh----hHHHHHHHHHHh
Confidence 99999999999999999999965 44556677777776654 234 6788999999653321 223445555555
Q ss_pred CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
| +|++++||.+|.++.. .++-|++.+.+.+
T Consensus 155 g-------lPYfETSA~tg~Nv~k----------ave~LldlvM~Ri 184 (219)
T KOG0081|consen 155 G-------LPYFETSACTGTNVEK----------AVELLLDLVMKRI 184 (219)
T ss_pred C-------CCeeeeccccCcCHHH----------HHHHHHHHHHHHH
Confidence 5 5899999999983222 3455555555444
No 300
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=3.5e-11 Score=114.41 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=114.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+-.+|.++|--++||||++..|-...- ...--|+......+.|++..+++||..|+..+...+..
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~---------------vttvPTiGfnVE~v~ykn~~f~vWDvGGq~k~R~lW~~ 80 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEI---------------VTTVPTIGFNVETVEYKNISFTVWDVGGQEKLRPLWKH 80 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCc---------------ccCCCccccceeEEEEcceEEEEEecCCCcccccchhh
Confidence 456899999999999999888754311 11134566777889999999999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCch-hhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++..+++|+|||+.+... ...+ ++.+.+.. .+.|++++.||.|.+++-. ..++.+.+.-..+.+ ..
T Consensus 81 Y~~~t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als------~~ei~~~L~l~~l~~--~~ 152 (181)
T KOG0070|consen 81 YFQNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS------AAEITNKLGLHSLRS--RN 152 (181)
T ss_pred hccCCcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC------HHHHHhHhhhhccCC--CC
Confidence 9999999999999876421 2222 23333322 2678899999999987643 223333333222222 23
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+-+..++|.+|. |+.+-++++.+.+.
T Consensus 153 w~iq~~~a~~G~--------------GL~egl~wl~~~~~ 178 (181)
T KOG0070|consen 153 WHIQSTCAISGE--------------GLYEGLDWLSNNLK 178 (181)
T ss_pred cEEeeccccccc--------------cHHHHHHHHHHHHh
Confidence 457889999998 99999999887664
No 301
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.23 E-value=4.8e-11 Score=110.27 Aligned_cols=158 Identities=18% Similarity=0.205 Sum_probs=109.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCccchHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~dF~~ev~~ 138 (662)
..++.+||.+-+|||+|+..+.....+.....++ |+...+....+.- ...++++|||.|++.|..-+..
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsdptv----------gvdffarlie~~pg~riklqlwdtagqerfrsitks 77 (213)
T KOG0091|consen 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTV----------GVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKS 77 (213)
T ss_pred EEEEEEEcCCcccHHHHHHHHhcCcccccCCCcc----------chHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHH
Confidence 4578999999999999999998775554433333 2222222222211 1357999999999999999999
Q ss_pred HHhhcceEEEEeeCCCC-chhhHHHHHHHHHHc-CCC----cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 139 VVGMVEGAILVVDAGEG-PLAQTKFVLAKALKY-GLR----PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G-~~~qt~~~l~~~~~~-~lp----~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
+++.+=|+++|+|.++. .+.+...|+..|... +-| +.+|..|+|+...+... .++...+.+..|.
T Consensus 78 yyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt----~EEaEklAa~hgM----- 148 (213)
T KOG0091|consen 78 YYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVT----AEEAEKLAASHGM----- 148 (213)
T ss_pred HhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhcccc----HHHHHHHHHhcCc-----
Confidence 99999999999997654 445555566665543 223 35788999996543322 2333344455554
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
-++++||++|. |+++-+++|.+.+
T Consensus 149 --~FVETSak~g~--------------NVeEAF~mlaqeI 172 (213)
T KOG0091|consen 149 --AFVETSAKNGC--------------NVEEAFDMLAQEI 172 (213)
T ss_pred --eEEEecccCCC--------------cHHHHHHHHHHHH
Confidence 38999999998 9999998887654
No 302
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.23 E-value=1.8e-10 Score=122.01 Aligned_cols=80 Identities=19% Similarity=0.159 Sum_probs=52.7
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE------------------------ecC
Q 006068 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS------------------------WRE 118 (662)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~------------------------~~~ 118 (662)
|+|+|.+++|||||+++|+..... .....+.|+........ +..
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~~------------~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~ 68 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADVE------------IANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRY 68 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCCc------------ccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCc
Confidence 589999999999999999976321 01111222222111111 234
Q ss_pred eeEEEEeCCCC----ccchH---HHHHHHhhcceEEEEeeCCC
Q 006068 119 NELNMVDTPGH----ADFGG---EVERVVGMVEGAILVVDAGE 154 (662)
Q Consensus 119 ~~iniIDTPGh----~dF~~---ev~~~l~~aD~aIlVVDa~~ 154 (662)
..++||||||. ..+.+ .....++.||++++|||+..
T Consensus 69 v~i~l~D~aGlv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~ 111 (318)
T cd01899 69 VPVELIDVAGLVPGAHEGKGLGNKFLDDLRDADALIHVVDASG 111 (318)
T ss_pred ceEEEEECCCCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence 67999999997 33333 45567999999999999863
No 303
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=6e-11 Score=111.06 Aligned_cols=169 Identities=19% Similarity=0.204 Sum_probs=116.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
.-.+|.|+|.-++|||||++++-..--. ... .++.. +--.|+.....++...+..+.+||--|+......+..
T Consensus 16 e~y~vlIlgldnAGKttfLe~~Kt~~~~-~~~--~l~~~----ki~~tvgLnig~i~v~~~~l~fwdlgGQe~lrSlw~~ 88 (197)
T KOG0076|consen 16 EDYSVLILGLDNAGKTTFLEALKTDFSK-AYG--GLNPS----KITPTVGLNIGTIEVCNAPLSFWDLGGQESLRSLWKK 88 (197)
T ss_pred hhhhheeeccccCCchhHHHHHHHHHHh-hhc--CCCHH----HeecccceeecceeeccceeEEEEcCChHHHHHHHHH
Confidence 3568999999999999999988543110 000 00010 1123445566667777889999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCc-h----hhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGP-L----AQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~-~----~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
++..|+++|+||||.+.. + .+-+.+...-...|+|+++.+||-|+.++-. ..+ ++.++++.... ..-+
T Consensus 89 yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~--~~E-l~~~~~~~e~~----~~rd 161 (197)
T KOG0076|consen 89 YYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME--AAE-LDGVFGLAELI----PRRD 161 (197)
T ss_pred HHHHhceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh--HHH-HHHHhhhhhhc----CCcc
Confidence 999999999999998732 2 2223344444556999999999999976422 111 22233322222 2235
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
.|+.++||.+|. |+++-.++++..++..
T Consensus 162 ~~~~pvSal~ge--------------gv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGE--------------GVKEGIEWLVKKLEKN 189 (197)
T ss_pred Cccccchhhhcc--------------cHHHHHHHHHHHHhhc
Confidence 889999999999 8888888888877654
No 304
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.21 E-value=5.6e-10 Score=114.54 Aligned_cols=153 Identities=16% Similarity=0.150 Sum_probs=91.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH---H
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---E 135 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---e 135 (662)
...+|+++|.+|+|||||+|+|++..... .....+.|.........+++.++++|||||..+... .
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~-----------v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~ 98 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAA-----------TSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRV 98 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcc-----------cCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHH
Confidence 45799999999999999999999873211 111123344445556667889999999999887631 1
Q ss_pred -------HHHHHh--hcceEEEEeeCCC-CchhhHHHHHHHHHH-cC----CCcEEEeccCCCCCCC--------HHHHH
Q 006068 136 -------VERVVG--MVEGAILVVDAGE-GPLAQTKFVLAKALK-YG----LRPILLLNKVDRPAVS--------EERCD 192 (662)
Q Consensus 136 -------v~~~l~--~aD~aIlVVDa~~-G~~~qt~~~l~~~~~-~~----lp~IvviNKiD~~~~~--------~~~~~ 192 (662)
+.+++. ..|.+++|..... ........+++.+.+ +| .+.++|+||+|....+ .++..
T Consensus 99 ~~~~~~~I~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~~~~~~~~~~~~ 178 (249)
T cd01853 99 NRKILSSIKRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGLNGTPFSYDRFV 178 (249)
T ss_pred HHHHHHHHHHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCCCCCcchHHHHH
Confidence 222332 4577777754432 233444556655544 44 3678999999984321 12222
Q ss_pred HHHHHHHHHHHhcCCCCcCCCccEEEcccc
Q 006068 193 EVESLVFDLFANLGATDEQLDFPVLYASAK 222 (662)
Q Consensus 193 ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~ 222 (662)
.....+..-.......+..+..|++.++..
T Consensus 179 ~~~~~i~~~~~~~~~~~~~~~~pv~lven~ 208 (249)
T cd01853 179 AQRSHIVQQAIQQAAGDPRLENPVSLVENH 208 (249)
T ss_pred HHHHHHHHHHhhhhccCccccCCEEEEeCC
Confidence 333333333222222334556888887654
No 305
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.21 E-value=1e-10 Score=120.97 Aligned_cols=160 Identities=21% Similarity=0.257 Sum_probs=109.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCcc------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHAD------ 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~d------ 131 (662)
-+-.|+++|-+++|||||++++... +......+-+|+......+.. .+..+.+-|.||...
T Consensus 158 llADVGLVG~PNaGKSTlls~vS~A------------kPKIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~ 225 (369)
T COG0536 158 LLADVGLVGLPNAGKSTLLSAVSAA------------KPKIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGV 225 (369)
T ss_pred eecccccccCCCCcHHHHHHHHhhc------------CCcccCCccccccCcccEEEecCCCcEEEecCcccccccccCC
Confidence 3568999999999999999999876 333444456677766666665 456799999999653
Q ss_pred -chHHHHHHHhhcceEEEEeeCCCC----chhhHHHHHHHHHHc-----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHH
Q 006068 132 -FGGEVERVVGMVEGAILVVDAGEG----PLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (662)
Q Consensus 132 -F~~ev~~~l~~aD~aIlVVDa~~G----~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l 201 (662)
++....+.+..|-..+.|||...- +..+-..++..+..+ +.|.+||+||+|.+.. .+.+++..+.+.+
T Consensus 226 GLG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~-~e~~~~~~~~l~~- 303 (369)
T COG0536 226 GLGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLD-EEELEELKKALAE- 303 (369)
T ss_pred CccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcC-HHHHHHHHHHHHH-
Confidence 455667788889999999997632 233334455555544 6789999999997543 3333333332221
Q ss_pred HHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
..+. ++.+++||.+++ |+++|+..+.+.+..
T Consensus 304 --~~~~------~~~~~ISa~t~~--------------g~~~L~~~~~~~l~~ 334 (369)
T COG0536 304 --ALGW------EVFYLISALTRE--------------GLDELLRALAELLEE 334 (369)
T ss_pred --hcCC------Ccceeeehhccc--------------CHHHHHHHHHHHHHH
Confidence 1222 123349999998 999998888776643
No 306
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.12 E-value=9.4e-10 Score=120.06 Aligned_cols=81 Identities=19% Similarity=0.191 Sum_probs=54.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE------------------------e
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS------------------------W 116 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~------------------------~ 116 (662)
.+|+|+|.+++|||||+++|+..... .....+.|+......+. +
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~------------~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~ 69 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE------------IANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGT 69 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc------------ccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCc
Confidence 37999999999999999999876321 11112233322222111 2
Q ss_pred cCeeEEEEeCCCCcc-------chHHHHHHHhhcceEEEEeeCC
Q 006068 117 RENELNMVDTPGHAD-------FGGEVERVVGMVEGAILVVDAG 153 (662)
Q Consensus 117 ~~~~iniIDTPGh~d-------F~~ev~~~l~~aD~aIlVVDa~ 153 (662)
....++|+||||..+ ......+.++.||++++|||+.
T Consensus 70 ~~~~i~i~D~aGl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 70 RFIPVELIDVAGLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred ceeeEEEEEcCCcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 235689999999532 3346667799999999999986
No 307
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=8.2e-10 Score=107.07 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=83.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
.+.|.++|..|+|||+|+-+|...+.. .+ -.++....+.+.+++....|||-|||..........
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~----~T-----------vtSiepn~a~~r~gs~~~~LVD~PGH~rlR~kl~e~ 102 (238)
T KOG0090|consen 38 QNAVLLVGLSDSGKTSLFTQLITGSHR----GT-----------VTSIEPNEATYRLGSENVTLVDLPGHSRLRRKLLEY 102 (238)
T ss_pred CCcEEEEecCCCCceeeeeehhcCCcc----Ce-----------eeeeccceeeEeecCcceEEEeCCCcHHHHHHHHHH
Confidence 357999999999999999999876321 11 234455566666777779999999999988887777
Q ss_pred Hh---hcceEEEEeeCCCCc---hhhHHHHHHHHH-----HcCCCcEEEeccCCCCCCCHH
Q 006068 140 VG---MVEGAILVVDAGEGP---LAQTKFVLAKAL-----KYGLRPILLLNKVDRPAVSEE 189 (662)
Q Consensus 140 l~---~aD~aIlVVDa~~G~---~~qt~~~l~~~~-----~~~lp~IvviNKiD~~~~~~~ 189 (662)
+. .+-++|||||+..-. ..-.+++...+. ..+.|++++.||.|+.-+.+.
T Consensus 103 ~~~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~ 163 (238)
T KOG0090|consen 103 LKHNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTA 163 (238)
T ss_pred ccccccceeEEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcH
Confidence 77 789999999976422 122233333332 345678899999999777654
No 308
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.10 E-value=1.4e-09 Score=109.89 Aligned_cols=160 Identities=18% Similarity=0.280 Sum_probs=97.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccc-cccceeEeeeEEEEEec-CeeEEEEeCCCCccchHH----
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLE-RERGITIASKVTGISWR-ENELNMVDTPGHADFGGE---- 135 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E-~ergiTi~~~~~~~~~~-~~~iniIDTPGh~dF~~e---- 135 (662)
+|.++|..++||||....+.... .+.+ ..-|.|++.....+... ...++|||+||+.+|...
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~------------~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~~~~ 68 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKY------------SPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENYFNS 68 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---------------GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTTHTC
T ss_pred CEEEEcCCCCChhhHHHHHHcCC------------CchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccccccccc
Confidence 58999999999999998888652 1211 22366777766666544 569999999999987654
Q ss_pred -HHHHHhhcceEEEEeeCCCCchhhHH----HHHHHHHHc--CCCcEEEeccCCCCCCCH--HHHHHHHHHHHHHHHhcC
Q 006068 136 -VERVVGMVEGAILVVDAGEGPLAQTK----FVLAKALKY--GLRPILLLNKVDRPAVSE--ERCDEVESLVFDLFANLG 206 (662)
Q Consensus 136 -v~~~l~~aD~aIlVVDa~~G~~~qt~----~~l~~~~~~--~lp~IvviNKiD~~~~~~--~~~~ei~~~v~~l~~~~g 206 (662)
.+..++.++++|+|+|+......... ..+..+.+. ++.+.|+++|+|+...+. +.+.+..+.+.+.+...+
T Consensus 69 ~~~~if~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~ 148 (232)
T PF04670_consen 69 QREEIFSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLG 148 (232)
T ss_dssp CHHHHHCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhcc
Confidence 57789999999999999843333333 344444444 566789999999854221 223334455555555555
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.. .+-++.+|--.. .+-+.+..|++.+
T Consensus 149 ~~----~~~~~~TSI~D~---------------Sly~A~S~Ivq~L 175 (232)
T PF04670_consen 149 IE----DITFFLTSIWDE---------------SLYEAWSKIVQKL 175 (232)
T ss_dssp -T----SEEEEEE-TTST---------------HHHHHHHHHHHTT
T ss_pred cc----ceEEEeccCcCc---------------HHHHHHHHHHHHH
Confidence 43 244666665543 5666666666554
No 309
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.08 E-value=2.3e-10 Score=111.43 Aligned_cols=161 Identities=17% Similarity=0.128 Sum_probs=115.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE-ecCeeEEEEeCCCCccchHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-WRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~-~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
..+++|+|...+|||+|+..+....+...+..++.|.. +....+. -+.+.+.+|||.|+.||.....-
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdny-----------s~~v~V~dg~~v~L~LwDTAGqedYDrlRpl 72 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNY-----------SANVTVDDGKPVELGLWDTAGQEDYDRLRPL 72 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccc-----------eEEEEecCCCEEEEeeeecCCCccccccccc
Confidence 35899999999999999999888877777777777663 2223332 44567899999999999775555
Q ss_pred HHhhcceEEEEeeCCCCchh--hHHHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHH---------HHHHHHHHhc
Q 006068 139 VVGMVEGAILVVDAGEGPLA--QTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVE---------SLVFDLFANL 205 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~--qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~---------~~v~~l~~~~ 205 (662)
.+..+|.+|++++..+.... -...|+-....+ ++|+|+|.+|.|+.+ ++...++.. ++...+.+++
T Consensus 73 sY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~-d~~~~~~l~~~~~~~Vt~~~g~~lA~~i 151 (198)
T KOG0393|consen 73 SYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD-DPSTLEKLQRQGLEPVTYEQGLELAKEI 151 (198)
T ss_pred CCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh-CHHHHHHHHhccCCcccHHHHHHHHHHh
Confidence 77889999998886654332 345566666665 689999999999962 332222221 2334455566
Q ss_pred CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|+ ..+++|||++.. |+.+.|+..+.+.
T Consensus 152 ga------~~y~EcSa~tq~--------------~v~~vF~~a~~~~ 178 (198)
T KOG0393|consen 152 GA------VKYLECSALTQK--------------GVKEVFDEAIRAA 178 (198)
T ss_pred Cc------ceeeeehhhhhC--------------CcHHHHHHHHHHH
Confidence 65 348999999998 8999888776664
No 310
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.08 E-value=1.7e-09 Score=114.42 Aligned_cols=173 Identities=21% Similarity=0.248 Sum_probs=95.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCc---------c-----ccc-ccccc---ccccceeEeeeEEE------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH---------E-----RAM-DSISL---ERERGITIASKVTG------ 113 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~---------~-----~v~-D~~~~---E~ergiTi~~~~~~------ 113 (662)
.....|+|+|.+|+|||||+..|.......... . .+. |.... ....+.-+......
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPSSPFTGGSILGDRTRMQRLATDPGAFIRSMPTRGHLGGL 111 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCcchhhhcccchhhhhcccCCCceeeecCccccccch
Confidence 346789999999999999999988653211000 0 000 10000 00111111111110
Q ss_pred ----------EEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCC
Q 006068 114 ----------ISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDR 183 (662)
Q Consensus 114 ----------~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~ 183 (662)
+...++.+.||||||... .....+..+|.++++.+...+-.-+ .... .-.++|.++|+||+|+
T Consensus 112 ~~~~~~~~~~l~~~g~D~viidT~G~~~---~e~~i~~~aD~i~vv~~~~~~~el~---~~~~-~l~~~~~ivv~NK~Dl 184 (300)
T TIGR00750 112 SQATRELILLLDAAGYDVIIVETVGVGQ---SEVDIANMADTFVVVTIPGTGDDLQ---GIKA-GLMEIADIYVVNKADG 184 (300)
T ss_pred hHHHHHHHHHHHhCCCCEEEEeCCCCch---hhhHHHHhhceEEEEecCCccHHHH---HHHH-HHhhhccEEEEEcccc
Confidence 122478999999999653 2234678899999886654332211 1111 1247889999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 184 PAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 184 ~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
...... ......+..-+..+.........|++++||++|. |+++|+++|.+++.
T Consensus 185 ~~~~~~--~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~--------------Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 185 EGATNV--TIARLMLALALEEIRRREDGWRPPVLTTSAVEGR--------------GIDELWDAIEEHKT 238 (300)
T ss_pred cchhHH--HHHHHHHHHHHhhccccccCCCCCEEEEEccCCC--------------CHHHHHHHHHHHHH
Confidence 754321 1111111100111111111123479999999998 99999999987643
No 311
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.07 E-value=7.3e-11 Score=110.56 Aligned_cols=164 Identities=16% Similarity=0.181 Sum_probs=112.0
Q ss_pred CCCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc
Q 006068 53 STLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (662)
Q Consensus 53 ~~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF 132 (662)
...+.+...+++|+|..++||||++.++++.-+...+..++ |+.+......+..++..+.+|||.|+.+|
T Consensus 13 ~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktI----------gvdflerqi~v~~Edvr~mlWdtagqeEf 82 (246)
T KOG4252|consen 13 DETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTI----------GVDFLERQIKVLIEDVRSMLWDTAGQEEF 82 (246)
T ss_pred CchhhhhhEEEEEECCCccchHHHHHHHhcccccccccccc----------chhhhhHHHHhhHHHHHHHHHHhccchhH
Confidence 33344567899999999999999999999764433332222 22222333334456778999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCc-hhhHHHHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
..-+..+++.|.+.+||++.++.. +..+.+|.+.... ..+|.++|-||+|+.+...-. ..++..+.+.+.
T Consensus 83 DaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~~~----~~evE~lak~l~--- 155 (246)
T KOG4252|consen 83 DAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQMD----KGEVEGLAKKLH--- 155 (246)
T ss_pred HHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhhhcc----hHHHHHHHHHhh---
Confidence 999999999999999999987653 4556666666544 479999999999995432211 112222222222
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
.-++-+|++... |+...|..+.+.
T Consensus 156 ----~RlyRtSvked~--------------NV~~vF~YLaeK 179 (246)
T KOG4252|consen 156 ----KRLYRTSVKEDF--------------NVMHVFAYLAEK 179 (246)
T ss_pred ----hhhhhhhhhhhh--------------hhHHHHHHHHHH
Confidence 226788999888 777776666544
No 312
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.05 E-value=3.3e-09 Score=95.95 Aligned_cols=155 Identities=17% Similarity=0.139 Sum_probs=108.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
..|..+|-.++||||++-.|.-...... --|+......+.|++.++|+||..|+......+.+++
T Consensus 18 ~~ilmlGLd~aGKTtiLyKLkl~~~~~~---------------ipTvGFnvetVtykN~kfNvwdvGGqd~iRplWrhYy 82 (180)
T KOG0071|consen 18 MRILMLGLDAAGKTTILYKLKLGQSVTT---------------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYY 82 (180)
T ss_pred ceEEEEecccCCceehhhHHhcCCCccc---------------ccccceeEEEEEeeeeEEeeeeccCchhhhHHHHhhc
Confidence 4789999999999999998875421100 1233445566789999999999999999999999999
Q ss_pred hhcceEEEEeeCCCC--chhhHHHHHHHH---HHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEG--PLAQTKFVLAKA---LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G--~~~qt~~~l~~~---~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
....++|||+|+.+. +...-.++.+.+ ....++++|..||-|++++.. ..++.+.|.-..+.+ ..+-
T Consensus 83 ~gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~------pqei~d~leLe~~r~--~~W~ 154 (180)
T KOG0071|consen 83 TGTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMK------PQEIQDKLELERIRD--RNWY 154 (180)
T ss_pred cCCceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccC------HHHHHHHhccccccC--CccE
Confidence 999999999997654 222222222222 223678889999999987653 233444443211211 2355
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+.++||.+|. |+.+=|.++.+.+
T Consensus 155 vqp~~a~~gd--------------gL~eglswlsnn~ 177 (180)
T KOG0071|consen 155 VQPSCALSGD--------------GLKEGLSWLSNNL 177 (180)
T ss_pred eeccccccch--------------hHHHHHHHHHhhc
Confidence 8899999998 8888888877654
No 313
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=99.04 E-value=1.7e-09 Score=108.23 Aligned_cols=163 Identities=13% Similarity=0.195 Sum_probs=94.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC-----ccc--cccccccccccceeE---eeeEE-------------EE
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-----HER--AMDSISLERERGITI---ASKVT-------------GI 114 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-----~~~--v~D~~~~E~ergiTi---~~~~~-------------~~ 114 (662)
..+++|+++|+.|+|||||+++|+...+.... ... -.|....+ ..|..+ ..... ..
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~~~~~v~v~~~~~~~~~D~~~~~-~~~~~~~~l~~gcic~~~~~~~~~~l~~~ 98 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLKDEVKIAVIEGDVITKFDAERLR-KYGAPAIQINTGKECHLDAHMVAHALEDL 98 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHhcCCeEEEEECCCCCcccHHHHH-HcCCcEEEEcCCCcccCChHHHHHHHHHh
Confidence 35899999999999999999999987442110 000 11222111 112111 11000 01
Q ss_pred EecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHH
Q 006068 115 SWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEV 194 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei 194 (662)
...+..+.||+|.|....... .....+..+.|+|+.++...+ .......+.|.++++||+|+.+.......+.
T Consensus 99 ~~~~~d~IiIEt~G~l~~~~~---~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~~~~~~~~~~ 171 (207)
T TIGR00073 99 PLDDIDLLFIENVGNLVCPAD---FDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAEAVGFDVEKM 171 (207)
T ss_pred ccCCCCEEEEecCCCcCCCcc---cccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccccchhhHHHH
Confidence 112468899999993211111 112345567889987664322 2223345678899999999965322222233
Q ss_pred HHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 195 ESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 195 ~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
.+. +..++ -..|++++||++|. |++++++++.++
T Consensus 172 ~~~----l~~~~-----~~~~i~~~Sa~~g~--------------gv~~l~~~i~~~ 205 (207)
T TIGR00073 172 KAD----AKKIN-----PEAEIILMSLKTGE--------------GLDEWLEFLEGQ 205 (207)
T ss_pred HHH----HHHhC-----CCCCEEEEECCCCC--------------CHHHHHHHHHHh
Confidence 333 22222 12579999999998 999999999765
No 314
>PF03144 GTP_EFTU_D2: Elongation factor Tu domain 2; InterPro: IPR004161 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding [, ]. EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). EF1A consists of three structural domains. This entry represents domain 2 of EF2, which adopts a beta-barrel structure, and is involved in binding to both charged tRNA []. This domain is structurally related to the C-terminal domain of EF2 (IPR004160 from INTERPRO), to which it displays weak sequence matches. This domain is also found in other proteins such as translation initiation factor IF-2 and tetracycline-resistance proteins. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005525 GTP binding; PDB: 3MCA_A 3AGJ_E 1SKQ_B 1JNY_A 1S0U_A 1ZUN_B 3SFS_W 3UOQ_W 2H5E_B 2XEX_A ....
Probab=99.03 E-value=3.5e-10 Score=93.73 Aligned_cols=73 Identities=34% Similarity=0.523 Sum_probs=63.5
Q ss_pred ceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCC-CccCceee
Q 006068 277 GRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK-PSIGHTVA 351 (662)
Q Consensus 277 G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~-~~~GdTl~ 351 (662)
|+++++||++|+|++||.|.+.+ ..++ .+....+|.+|+.+++....++..+.||+++++.++++ +++|||||
T Consensus 1 G~v~~grV~sG~l~~gd~v~~~~-~~~~-~~~~~~~I~~i~~~~~~~~~~~~~~~~G~~~~~~~~~~~i~~Gdtl~ 74 (74)
T PF03144_consen 1 GRVATGRVYSGTLKKGDKVRVLP-NGTG-KKGQVVKIKSIFMFNGDVQEAVAGANAGDIVAIIGLNDAIRRGDTLT 74 (74)
T ss_dssp EEEEEEEEEESEEETTEEEEEES-TTTT-EECEEEEEEEEEETTEEESEEETTEEEEEEEESSSGCSCSSTTEEEE
T ss_pred CEEEEEEEEEeEEcCCCEEEECc-cCCc-ceeeeeecccccccccCccEeCCceeeEEEEEEcCCCCCcCcCCEEC
Confidence 78999999999999999999976 3221 01234899999999999999999999999999999999 89999997
No 315
>KOG0052 consensus Translation elongation factor EF-1 alpha/Tu [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.3e-10 Score=122.39 Aligned_cols=211 Identities=25% Similarity=0.295 Sum_probs=141.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCC-------------------CCccccccccccccccceeEeeeEEEEEecCe
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD-------------------IPHERAMDSISLERERGITIASKVTGISWREN 119 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-------------------~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~ 119 (662)
..+||.++||+++||||+.. +.+|.. ....+++|+...|++||++|+.....+....+
T Consensus 6 ~~~ni~~i~h~~s~~stt~~---~~~g~id~~~~~k~~keaa~~~kgsf~~a~~~dk~~ae~~r~i~I~~~l~~~~t~k~ 82 (391)
T KOG0052|consen 6 IHINIVVIGHVDSGKSTTTG---YKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETSKY 82 (391)
T ss_pred cccceEEEEeeeeeeeEEEe---eecccccchhhhhhchHHHhhccceeeeeeeechhhhccccceEEEEEeecccceeE
Confidence 35799999999999999877 333321 12357899999999999999988888888889
Q ss_pred eEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-------chhhHHHHHHHHHHcCCC-cEEEeccCCCCC--CCHH
Q 006068 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLR-PILLLNKVDRPA--VSEE 189 (662)
Q Consensus 120 ~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-------~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~--~~~~ 189 (662)
.++++|.|||.||...+......+|.++++|.+..| ...||+++...+..+++. +++.+||||... ....
T Consensus 83 ~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~ 162 (391)
T KOG0052|consen 83 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA 162 (391)
T ss_pred EEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCcccc
Confidence 999999999999999888888999999999998443 237999999999999875 578899999744 3334
Q ss_pred HHHHHHHHHHHHHHhcCCCCcC--CCccEEEcccccCccCCccCCCCCCCccc-hHHHHHHHHhhCCCCCCCCCCCceeE
Q 006068 190 RCDEVESLVFDLFANLGATDEQ--LDFPVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRHVPPPKASLDAPFQML 266 (662)
Q Consensus 190 ~~~ei~~~v~~l~~~~g~~~~~--~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g-v~~Lld~I~~~lP~p~~~~~~p~~~~ 266 (662)
++.++.++........+..... .+++.+- |+ + ...+++.....++.|... +..+.
T Consensus 163 r~~ei~k~~~~~~~~~g~n~~~~~~~~~~~~-----g~--------------~~~t~iie~~~~v~~~~~~~---~~~vk 220 (391)
T KOG0052|consen 163 RYEEIKKEVSSYIKKIGYNPAAVLQDVYKIG-----GI--------------GVETGISEPGMDVTFAPSGV---TTEVK 220 (391)
T ss_pred chhhhheeeeeeeeccccCChhhhccceeec-----ce--------------eeeeeeccCccceecccccc---ccccc
Confidence 4555555444444444443321 1111111 11 1 112333333444444332 55555
Q ss_pred EEeeeeecc---cceEEEEEEeeceeccCCE
Q 006068 267 VTMMEKDFY---LGRILTGRVSSGVVSVGDK 294 (662)
Q Consensus 267 V~~~~~~~~---~G~i~~gRV~sG~l~~Gd~ 294 (662)
..++.+... .+....|++..|...++..
T Consensus 221 ~~~~~~~a~s~~~p~~~vG~~~~~v~v~~i~ 251 (391)
T KOG0052|consen 221 SVKVHHEAGSEDLPGDNVGFNVKNVSVKDID 251 (391)
T ss_pred cEEEEeccCccCCCcceeeeecccCccCccc
Confidence 555555433 4456777777776655543
No 316
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.01 E-value=3.6e-09 Score=112.78 Aligned_cols=168 Identities=19% Similarity=0.293 Sum_probs=107.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC----CC-CCccccccccccccccc---eeEeeeE---EEEEec-----CeeEEEE
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG----AD-IPHERAMDSISLERERG---ITIASKV---TGISWR-----ENELNMV 124 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g----~~-~~~~~v~D~~~~E~erg---iTi~~~~---~~~~~~-----~~~iniI 124 (662)
..|+++|++++|||||+++|..+.- .. ....+..|-.+. ...| +|.+.++ ..++.. ..++.||
T Consensus 18 IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpq-s~~GktItTTePkfvP~kAvEI~~~~~~~~~VrlI 96 (492)
T TIGR02836 18 IYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQ-SAAGKTIMTTEPKFVPNEAVEININEGTKFKVRLV 96 (492)
T ss_pred EEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCc-CCCCCCcccCCCccccCcceEEeccCCCcccEEEE
Confidence 4799999999999999999998832 11 112333343333 2346 4555554 333332 2689999
Q ss_pred eCCCCccch-------HH----------------------HHHHHh-hcceEEEEe-eCC------CCchhhHHHHHHHH
Q 006068 125 DTPGHADFG-------GE----------------------VERVVG-MVEGAILVV-DAG------EGPLAQTKFVLAKA 167 (662)
Q Consensus 125 DTPGh~dF~-------~e----------------------v~~~l~-~aD~aIlVV-Da~------~G~~~qt~~~l~~~ 167 (662)
||+|+.+=+ .. +...+. .+|.+|+|. |+. ++......+++..+
T Consensus 97 DcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~eL 176 (492)
T TIGR02836 97 DCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEEL 176 (492)
T ss_pred ECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHHH
Confidence 999976511 11 456677 899999998 875 55667778899999
Q ss_pred HHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHH
Q 006068 168 LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDA 247 (662)
Q Consensus 168 ~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~ 247 (662)
++.++|+|+++||.|-.. .+ ..+..+++.+ .+ ++|++++|+..=. ...+..+|+.
T Consensus 177 k~~~kPfiivlN~~dp~~--~e-t~~l~~~l~e---ky-------~vpvl~v~c~~l~------------~~DI~~il~~ 231 (492)
T TIGR02836 177 KELNKPFIILLNSTHPYH--PE-TEALRQELEE---KY-------DVPVLAMDVESMR------------ESDILSVLEE 231 (492)
T ss_pred HhcCCCEEEEEECcCCCC--ch-hHHHHHHHHH---Hh-------CCceEEEEHHHcC------------HHHHHHHHHH
Confidence 999999999999999421 11 1222222221 11 3567777765432 1156666666
Q ss_pred HHhhCCC
Q 006068 248 IIRHVPP 254 (662)
Q Consensus 248 I~~~lP~ 254 (662)
++-.+|-
T Consensus 232 vL~EFPv 238 (492)
T TIGR02836 232 VLYEFPI 238 (492)
T ss_pred HHhcCCc
Confidence 6666653
No 317
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.01 E-value=7.8e-10 Score=111.57 Aligned_cols=166 Identities=27% Similarity=0.337 Sum_probs=96.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC---------C------ccccccccc---cccccceeEeeeEEEE------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI---------P------HERAMDSIS---LERERGITIASKVTGI------ 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---------~------~~~v~D~~~---~E~ergiTi~~~~~~~------ 114 (662)
+...|+|.|++|+|||||+++|....-... + ..-.-|... .....++=|.+....=
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGGls 107 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGGLS 107 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCCcc
Confidence 356899999999999999999986532100 0 011112211 1223344443322211
Q ss_pred ----------EecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHH--HHHHHHHcCCCcEEEeccCC
Q 006068 115 ----------SWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKF--VLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 115 ----------~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~--~l~~~~~~~lp~IvviNKiD 182 (662)
+.-++.+.||.|-|.-.-. .....++|.+++|+-...|-.-|..+ +++. .-|+|+||.|
T Consensus 108 ~~t~~~v~ll~aaG~D~IiiETVGvGQsE---~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi------aDi~vVNKaD 178 (266)
T PF03308_consen 108 RATRDAVRLLDAAGFDVIIIETVGVGQSE---VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI------ADIFVVNKAD 178 (266)
T ss_dssp HHHHHHHHHHHHTT-SEEEEEEESSSTHH---HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-------SEEEEE--S
T ss_pred HhHHHHHHHHHHcCCCEEEEeCCCCCccH---HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh------ccEEEEeCCC
Confidence 1128899999999864322 23578999999999877776655432 4444 4599999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 183 ~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++.+ +....++...+.-..-.......||+.+||.+|. |+++|.++|.+|.
T Consensus 179 ~~gA-----~~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~--------------Gi~eL~~~i~~~~ 229 (266)
T PF03308_consen 179 RPGA-----DRTVRDLRSMLHLLREREDGWRPPVLKTSALEGE--------------GIDELWEAIDEHR 229 (266)
T ss_dssp HHHH-----HHHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTB--------------SHHHHHHHHHHHH
T ss_pred hHHH-----HHHHHHHHHHHhhccccccCCCCCEEEEEeCCCC--------------CHHHHHHHHHHHH
Confidence 7543 3344444444432221223334699999999998 9999999998763
No 318
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.01 E-value=1.7e-09 Score=108.40 Aligned_cols=181 Identities=20% Similarity=0.243 Sum_probs=106.7
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCc---------------------------cccccccccccccceeEeee
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH---------------------------ERAMDSISLERERGITIASK 110 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~---------------------------~~v~D~~~~E~ergiTi~~~ 110 (662)
++...|.++|..|+||||++.+|....+..... .-+|.........||.....
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~TsLN 96 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTSLN 96 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCCcchhhhHH
Confidence 455689999999999999999998765432110 12344444555556654433
Q ss_pred EEEEEe-----------cCeeEEEEeCCCCcc-ch-----HHHHHHH-hh-cceEEEEeeCCCCchhhH-----HHHHHH
Q 006068 111 VTGISW-----------RENELNMVDTPGHAD-FG-----GEVERVV-GM-VEGAILVVDAGEGPLAQT-----KFVLAK 166 (662)
Q Consensus 111 ~~~~~~-----------~~~~iniIDTPGh~d-F~-----~ev~~~l-~~-aD~aIlVVDa~~G~~~qt-----~~~l~~ 166 (662)
.....+ ..+++.||||||+.. |. .-...++ .. --.+++|||....-.+.| ......
T Consensus 97 LF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSi 176 (366)
T KOG1532|consen 97 LFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSI 176 (366)
T ss_pred HHHHHHHHHHHHHHHhhcccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHH
Confidence 322222 246799999999875 32 1111122 22 235788999765544433 333455
Q ss_pred HHHcCCCcEEEeccCCCCCCCH--------HHHHHHHHHH-----HHHHHhcC--CCCcCCCccEEEcccccCccCCccC
Q 006068 167 ALKYGLRPILLLNKVDRPAVSE--------ERCDEVESLV-----FDLFANLG--ATDEQLDFPVLYASAKEGWASSTFT 231 (662)
Q Consensus 167 ~~~~~lp~IvviNKiD~~~~~~--------~~~~ei~~~v-----~~l~~~~g--~~~~~~~~Pvi~~SA~~g~~~~~~~ 231 (662)
+.+..+|.|++.||+|..+..+ +.+++.+++. .++...+. +..--...-.+.+|+.+|.
T Consensus 177 lyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~------ 250 (366)
T KOG1532|consen 177 LYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGE------ 250 (366)
T ss_pred HHhccCCeEEEEecccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCC------
Confidence 5677999999999999977544 2333333321 01100000 0000002347999999999
Q ss_pred CCCCCCccchHHHHHHHHhhC
Q 006068 232 KDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 232 ~~~~~~~~gv~~Lld~I~~~l 252 (662)
|++++|.+|.+.+
T Consensus 251 --------G~ddf~~av~~~v 263 (366)
T KOG1532|consen 251 --------GFDDFFTAVDESV 263 (366)
T ss_pred --------cHHHHHHHHHHHH
Confidence 9999999887654
No 319
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.99 E-value=1.4e-09 Score=96.78 Aligned_cols=138 Identities=22% Similarity=0.271 Sum_probs=93.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCC----CccchHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG----HADFGGEV 136 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPG----h~dF~~ev 136 (662)
.+++++|.+|+|||||+++|-+.. +...+.-.++|++. ..||||| |..+-...
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~---------------------~lykKTQAve~~d~--~~IDTPGEy~~~~~~Y~aL 58 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGND---------------------TLYKKTQAVEFNDK--GDIDTPGEYFEHPRWYHAL 58 (148)
T ss_pred ceeEEecccccCchhHHHHhhcch---------------------hhhcccceeeccCc--cccCCchhhhhhhHHHHHH
Confidence 379999999999999999997651 11223344555432 3689999 44444445
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
...+..+|.+++|-.+.++...-. -..+.-...|+|=+++|.|++. ..+ .+.+..++.+.|+. |+
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f~---p~f~~~~~k~vIgvVTK~DLae--d~d----I~~~~~~L~eaGa~------~I 123 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRFP---PGFLDIGVKKVIGVVTKADLAE--DAD----ISLVKRWLREAGAE------PI 123 (148)
T ss_pred HHHhhccceeeeeecccCccccCC---cccccccccceEEEEecccccc--hHh----HHHHHHHHHHcCCc------ce
Confidence 555677899999999887643211 1222334567888999999963 222 23344456666753 59
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
|.+|+.+.. |+++|++.+..
T Consensus 124 F~~s~~d~~--------------gv~~l~~~L~~ 143 (148)
T COG4917 124 FETSAVDNQ--------------GVEELVDYLAS 143 (148)
T ss_pred EEEeccCcc--------------cHHHHHHHHHh
Confidence 999999987 99999998854
No 320
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.98 E-value=4.5e-09 Score=107.35 Aligned_cols=167 Identities=23% Similarity=0.270 Sum_probs=101.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCC------------CCc---cccccccc---cccccceeEeeeEEE-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD------------IPH---ERAMDSIS---LERERGITIASKVTG------- 113 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~------------~~~---~~v~D~~~---~E~ergiTi~~~~~~------- 113 (662)
+...|+|.|.+|+|||||+++|....... +.. +-.-|... .....|+=+.+....
T Consensus 50 ~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS 129 (323)
T COG1703 50 NAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLS 129 (323)
T ss_pred CCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccchhhh
Confidence 45689999999999999999997653210 000 00111111 011112222211111
Q ss_pred ---------EEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHH--HHHHHHHcCCCcEEEeccCC
Q 006068 114 ---------ISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKF--VLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 114 ---------~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~--~l~~~~~~~lp~IvviNKiD 182 (662)
++--++.+.||.|-|.-.-.- ....++|.+++|.=+.-|-..|..+ +++.+ -|+||||.|
T Consensus 130 ~at~~~i~~ldAaG~DvIIVETVGvGQsev---~I~~~aDt~~~v~~pg~GD~~Q~iK~GimEia------Di~vINKaD 200 (323)
T COG1703 130 RATREAIKLLDAAGYDVIIVETVGVGQSEV---DIANMADTFLVVMIPGAGDDLQGIKAGIMEIA------DIIVINKAD 200 (323)
T ss_pred HHHHHHHHHHHhcCCCEEEEEecCCCcchh---HHhhhcceEEEEecCCCCcHHHHHHhhhhhhh------heeeEeccC
Confidence 111288999999998644222 3568999999998877777766653 34433 499999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhc--CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 183 RPAVSEERCDEVESLVFDLFANL--GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 183 ~~~~~~~~~~ei~~~v~~l~~~~--g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+.++.. ...++...+... .........|++.+||.+|. |+++|.++|.+|..
T Consensus 201 ~~~A~~-----a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~--------------Gi~~L~~ai~~h~~ 254 (323)
T COG1703 201 RKGAEK-----AARELRSALDLLREVWRENGWRPPVVTTSALEGE--------------GIDELWDAIEDHRK 254 (323)
T ss_pred hhhHHH-----HHHHHHHHHHhhcccccccCCCCceeEeeeccCC--------------CHHHHHHHHHHHHH
Confidence 865432 222332222222 12233445789999999998 99999999988763
No 321
>cd03693 EF1_alpha_II EF1_alpha_II: this family represents the domain II of elongation factor 1-alpha (EF-1a) that is found in archaea and all eukaryotic lineages. EF-1A is very abundant in the cytosol, where it is involved in the GTP-dependent binding of aminoacyl-tRNAs to the A site of the ribosomes in the second step of translation from mRNAs to proteins. Both domain II of EF1A and domain IV of IF2/eIF5B have been implicated in recognition of the 3'-ends of tRNA. More than 61% of eukaryotic elongation factor 1A (eEF-1A) in cells is estimated to be associated with actin cytoskeleton. The binding of eEF1A to actin is a noncanonical function that may link two distinct cellular processes, cytoskeleton organization and gene expression.
Probab=98.92 E-value=7.2e-09 Score=89.67 Aligned_cols=85 Identities=20% Similarity=0.266 Sum_probs=72.7
Q ss_pred CCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE-
Q 006068 260 DAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV- 338 (662)
Q Consensus 260 ~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai- 338 (662)
+.||++.|.+++.....|+++.|||.+|+++.||.|.+.+.+ ...+|++|..+. .++++|.|||.|++
T Consensus 2 ~~p~r~~V~~vf~~~g~g~vv~G~v~~G~i~~gd~v~i~P~~-------~~~~V~sI~~~~----~~~~~a~aG~~v~i~ 70 (91)
T cd03693 2 DKPLRLPIQDVYKIGGIGTVPVGRVETGVLKPGMVVTFAPAG-------VTGEVKSVEMHH----EPLEEALPGDNVGFN 70 (91)
T ss_pred CCCeEEEEEEEEEeCCceEEEEEEEecceeecCCEEEECCCC-------cEEEEEEEEECC----cCcCEECCCCEEEEE
Confidence 579999999999988899999999999999999999999753 567899998663 47899999999877
Q ss_pred -cCcC--CCccCceeeecCC
Q 006068 339 -AGMT--KPSIGHTVANTEV 355 (662)
Q Consensus 339 -~gl~--~~~~GdTl~~~~~ 355 (662)
.+++ +++.||.||++++
T Consensus 71 l~~i~~~~v~~G~vl~~~~~ 90 (91)
T cd03693 71 VKNVSKKDIKRGDVAGDSKN 90 (91)
T ss_pred ECCCCHHHcCCcCEEccCCC
Confidence 4653 5889999998754
No 322
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.92 E-value=3.5e-09 Score=108.03 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=57.3
Q ss_pred eEEEEeCCCCccchHHHHHH------Hh--hcceEEEEeeCCCCchhhHH-----HHHHHHHHcCCCcEEEeccCCCCCC
Q 006068 120 ELNMVDTPGHADFGGEVERV------VG--MVEGAILVVDAGEGPLAQTK-----FVLAKALKYGLRPILLLNKVDRPAV 186 (662)
Q Consensus 120 ~iniIDTPGh~dF~~ev~~~------l~--~aD~aIlVVDa~~G~~~qt~-----~~l~~~~~~~lp~IvviNKiD~~~~ 186 (662)
.+.|+|||||.+|....... |. ..=++++++|+..-..+... ..+....+.++|+|.|+||+|+...
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 79999999998864322222 22 23368999998643332221 2223344579999999999999652
Q ss_pred CHHHHHH------------------HHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHH
Q 006068 187 SEERCDE------------------VESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (662)
Q Consensus 187 ~~~~~~e------------------i~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I 248 (662)
..+...+ ..+++..++...+. ..+++++|+.++. |+..|+..|
T Consensus 172 ~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~-----~~~f~pls~~~~~--------------~~~~L~~~i 232 (238)
T PF03029_consen 172 YLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGL-----VIRFIPLSSKDGE--------------GMEELLAAI 232 (238)
T ss_dssp HHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSS-----S---EE-BTTTTT--------------THHHHHHHH
T ss_pred hhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CceEEEEECCChH--------------HHHHHHHHH
Confidence 2111111 11122222222221 1268999999998 999999887
Q ss_pred Hh
Q 006068 249 IR 250 (662)
Q Consensus 249 ~~ 250 (662)
-+
T Consensus 233 d~ 234 (238)
T PF03029_consen 233 DK 234 (238)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 323
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.89 E-value=1.3e-08 Score=103.45 Aligned_cols=128 Identities=14% Similarity=0.135 Sum_probs=83.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcC------CCCC-----------c----------cccccccccc------cc---
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG------ADIP-----------H----------ERAMDSISLE------RE--- 102 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g------~~~~-----------~----------~~v~D~~~~E------~e--- 102 (662)
..+.|+++|+.++|||||+++|++... .... . ..+.|..... .+
T Consensus 25 ~~p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 356899999999999999999997631 0000 0 0011111110 00
Q ss_pred -cceeEeeeEEEEEe--c-CeeEEEEeCCCCccc-------------hHHHHHHHhh-cceEEEEeeCCCCchhhH-HHH
Q 006068 103 -RGITIASKVTGISW--R-ENELNMVDTPGHADF-------------GGEVERVVGM-VEGAILVVDAGEGPLAQT-KFV 163 (662)
Q Consensus 103 -rgiTi~~~~~~~~~--~-~~~iniIDTPGh~dF-------------~~ev~~~l~~-aD~aIlVVDa~~G~~~qt-~~~ 163 (662)
.+-.+......++. . ...++||||||..+. ...+..+++. .+.+++|+||..++..+. .++
T Consensus 105 ~~~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~i 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHH
Confidence 01112222222222 1 368999999998632 1245567774 468999999999888877 578
Q ss_pred HHHHHHcCCCcEEEeccCCCCCC
Q 006068 164 LAKALKYGLRPILLLNKVDRPAV 186 (662)
Q Consensus 164 l~~~~~~~lp~IvviNKiD~~~~ 186 (662)
.+.+...+.|.|+|+||+|....
T Consensus 185 a~~ld~~~~rti~ViTK~D~~~~ 207 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDE 207 (240)
T ss_pred HHHHHHcCCcEEEEEECCCCCCc
Confidence 88888899999999999998653
No 324
>cd03698 eRF3_II_like eRF3_II_like: domain similar to domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM
Probab=98.88 E-value=1.1e-08 Score=86.84 Aligned_cols=79 Identities=25% Similarity=0.405 Sum_probs=68.2
Q ss_pred CceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--c
Q 006068 262 PFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--A 339 (662)
Q Consensus 262 p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~ 339 (662)
||+++|.+++..+ .|+++.|||.+|++++||.|.+.+.+ ...+|++|..++ .++++|.|||.+++ .
T Consensus 1 p~r~~V~~v~~~~-~g~vv~G~v~~G~i~~Gd~v~i~P~~-------~~~~V~si~~~~----~~~~~a~aGd~v~~~l~ 68 (83)
T cd03698 1 PFRLPISDKYKDQ-GGTVVSGKVESGSIQKGDTLLVMPSK-------ESVEVKSIYVDD----EEVDYAVAGENVRLKLK 68 (83)
T ss_pred CeEEEEEeEEEcC-CCcEEEEEEeeeEEeCCCEEEEeCCC-------cEEEEEEEEECC----eECCEECCCCEEEEEEC
Confidence 7899999999888 89999999999999999999999753 457899997653 68999999999975 5
Q ss_pred CcC--CCccCceeee
Q 006068 340 GMT--KPSIGHTVAN 352 (662)
Q Consensus 340 gl~--~~~~GdTl~~ 352 (662)
+++ ++..||+||+
T Consensus 69 ~~~~~~v~~G~vl~~ 83 (83)
T cd03698 69 GIDEEDISPGDVLCS 83 (83)
T ss_pred CCCHHHCCCCCEEeC
Confidence 655 6889999974
No 325
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.88 E-value=4.2e-09 Score=95.72 Aligned_cols=157 Identities=17% Similarity=0.155 Sum_probs=106.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
--+|.++|-.|+||||..-++--..+. ...-|+......+.|++.++++||.-|+.....-+..+
T Consensus 18 e~rililgldGaGkttIlyrlqvgevv---------------ttkPtigfnve~v~yKNLk~~vwdLggqtSirPyWRcY 82 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGEVV---------------TTKPTIGFNVETVPYKNLKFQVWDLGGQTSIRPYWRCY 82 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCccc---------------ccCCCCCcCccccccccccceeeEccCcccccHHHHHH
Confidence 347899999999999876555322111 11234455667788899999999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchh--hHHHHHHHH---HHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPLA--QTKFVLAKA---LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~--qt~~~l~~~---~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+...|.+|+|||..+-..- .-.++...+ +-.+..++||.||+|...+- ...++...+.-....+. .+
T Consensus 83 y~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~------t~~E~~~~L~l~~Lk~r--~~ 154 (182)
T KOG0072|consen 83 YADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL------TRSEVLKMLGLQKLKDR--IW 154 (182)
T ss_pred hcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh------hHHHHHHHhChHHHhhh--ee
Confidence 9999999999998764332 222233333 22355678899999986532 22222221110001111 26
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.++..||.+|. |+++.+|++.+-+.
T Consensus 155 ~Iv~tSA~kg~--------------Gld~~~DWL~~~l~ 179 (182)
T KOG0072|consen 155 QIVKTSAVKGE--------------GLDPAMDWLQRPLK 179 (182)
T ss_pred EEEeecccccc--------------CCcHHHHHHHHHHh
Confidence 69999999999 99999999987554
No 326
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.87 E-value=1.3e-08 Score=92.21 Aligned_cols=143 Identities=18% Similarity=0.216 Sum_probs=96.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCCccchHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh~dF~~ev~~ 138 (662)
-.+|.++|-.++||||++..|... |....-+..|..+ ..+.+.+ +++|+||..|+.....-+..
T Consensus 17 EirilllGldnAGKTT~LKqL~sE-----------D~~hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr~IRpyWsN 81 (185)
T KOG0074|consen 17 EIRILLLGLDNAGKTTFLKQLKSE-----------DPRHLTPTNGFNT----KKVEYDGTFHLNVWDIGGQRGIRPYWSN 81 (185)
T ss_pred eEEEEEEecCCCcchhHHHHHccC-----------ChhhccccCCcce----EEEeecCcEEEEEEecCCccccchhhhh
Confidence 457999999999999999999765 3333444445443 4466665 89999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCch-hhH-HH---HHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQT-KF---VLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt-~~---~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
++...|++|+|+|+++.-. ..+ .+ ++...+-..+|+.++.||-|+.-+-. .+++...+ .-.+..+. .
T Consensus 82 Yyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~--~eeia~kl----nl~~lrdR--s 153 (185)
T KOG0074|consen 82 YYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK--VEEIALKL----NLAGLRDR--S 153 (185)
T ss_pred hhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc--hHHHHHhc----chhhhhhc--e
Confidence 9999999999999766422 222 22 22333334689999999999854322 12222111 00111111 3
Q ss_pred ccEEEcccccCc
Q 006068 214 FPVLYASAKEGW 225 (662)
Q Consensus 214 ~Pvi~~SA~~g~ 225 (662)
+-+-.|||.++.
T Consensus 154 whIq~csals~e 165 (185)
T KOG0074|consen 154 WHIQECSALSLE 165 (185)
T ss_pred EEeeeCcccccc
Confidence 557889999988
No 327
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=98.87 E-value=3.4e-08 Score=103.18 Aligned_cols=115 Identities=13% Similarity=0.159 Sum_probs=71.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH---H
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---E 135 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---e 135 (662)
...+|+++|.+|+|||||+|+|++..-.. +.++ .+.+.........+++.++++|||||..+... +
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~-----vs~f------~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~~~~e~ 105 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIAT-----VSAF------QSEGLRPMMVSRTRAGFTLNIIDTPGLIEGGYINDQ 105 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccc-----ccCC------CCcceeEEEEEEEECCeEEEEEECCCCCchHHHHHH
Confidence 35689999999999999999999763211 0011 11122222233456889999999999887532 2
Q ss_pred HHHHHh------hcceEEEEeeCCC-CchhhHHHHHHHHHHc-C----CCcEEEeccCCCC
Q 006068 136 VERVVG------MVEGAILVVDAGE-GPLAQTKFVLAKALKY-G----LRPILLLNKVDRP 184 (662)
Q Consensus 136 v~~~l~------~aD~aIlVVDa~~-G~~~qt~~~l~~~~~~-~----lp~IvviNKiD~~ 184 (662)
....++ ..|.+|+|..... .....+..+++.+.+. | .+.||++|+.|..
T Consensus 106 ~~~~ik~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 106 AVNIIKRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred HHHHHHHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 222232 4788999944322 2333444455444432 3 4679999999974
No 328
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.84 E-value=5.3e-09 Score=105.34 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=101.8
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccccccccc-ccceeEeeeEEEEEecCeeEEEEeCCCC------
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLER-ERGITIASKVTGISWRENELNMVDTPGH------ 129 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~-ergiTi~~~~~~~~~~~~~iniIDTPGh------ 129 (662)
..+...+++.|.+|+|||+|+|.++...- +.|. ++ ..|-|....... -+..+.++|.||+
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~-------~~~t---~k~K~g~Tq~in~f~---v~~~~~~vDlPG~~~a~y~ 199 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKN-------IADT---SKSKNGKTQAINHFH---VGKSWYEVDLPGYGRAGYG 199 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhh-------hhhh---cCCCCccceeeeeee---ccceEEEEecCCcccccCC
Confidence 34567899999999999999999987622 1111 11 345554443333 3678999999993
Q ss_pred ----ccchHHHHHHHhhc---ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 006068 130 ----ADFGGEVERVVGMV---EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLF 202 (662)
Q Consensus 130 ----~dF~~ev~~~l~~a---D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~ 202 (662)
.|+...+..++-.- =-+.+++|+..++++.+...+.++.+.++|..+|.||||+...-..--......+...|
T Consensus 200 ~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f 279 (320)
T KOG2486|consen 200 FELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINF 279 (320)
T ss_pred ccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhhccccccCccccceeeh
Confidence 34555555555433 34788899999999999999999999999999999999984211000000000111112
Q ss_pred HhcCCCCcCCCccEEEcccccCc
Q 006068 203 ANLGATDEQLDFPVLYASAKEGW 225 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~ 225 (662)
..+.-..-..+.|++++|+.++.
T Consensus 280 ~~l~~~~f~~~~Pw~~~Ssvt~~ 302 (320)
T KOG2486|consen 280 QGLIRGVFLVDLPWIYVSSVTSL 302 (320)
T ss_pred hhccccceeccCCceeeeccccc
Confidence 22211122335789999999998
No 329
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.83 E-value=5.6e-08 Score=104.13 Aligned_cols=81 Identities=19% Similarity=0.235 Sum_probs=60.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-----------------eeEEE
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NELNM 123 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-----------------~~ini 123 (662)
.+|+|+|.+|+|||||+++|+... ......++.|+......+.+.+ ..+.|
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~------------~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~l 70 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAG------------AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEF 70 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC------------CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEE
Confidence 479999999999999999998762 2233345666666655555443 25999
Q ss_pred EeCCCCcc-------chHHHHHHHhhcceEEEEeeCC
Q 006068 124 VDTPGHAD-------FGGEVERVVGMVEGAILVVDAG 153 (662)
Q Consensus 124 IDTPGh~d-------F~~ev~~~l~~aD~aIlVVDa~ 153 (662)
+||||..+ ++......++.||++++|||+.
T Consensus 71 vD~pGL~~~a~~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 71 VDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred EECCCCCCCCChHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 99999643 3345667789999999999985
No 330
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.82 E-value=3.2e-08 Score=106.03 Aligned_cols=170 Identities=16% Similarity=0.172 Sum_probs=92.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeE-eeeEEEEEecC-eeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITI-ASKVTGISWRE-NELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi-~~~~~~~~~~~-~~iniIDTPGh~dF~~ev~ 137 (662)
..||||+|.+|+|||||+|+|.+-...+... -..|.+- ......+.+.. -.+.+||.||...-.....
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~a----------A~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~ 104 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGA----------APTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE 104 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS------------SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCc----------CCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH
Confidence 4599999999999999999997542211100 0011110 01112222222 3699999999643222333
Q ss_pred HHH-----hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC----------CCHH-HHHHHHHHHHHH
Q 006068 138 RVV-----GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA----------VSEE-RCDEVESLVFDL 201 (662)
Q Consensus 138 ~~l-----~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~----------~~~~-~~~ei~~~v~~l 201 (662)
.++ ...|..|++.+ +........+++.+.++|.|+.+|-+|+|..- .+.+ .++++.+.+.+-
T Consensus 105 ~Yl~~~~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~ 182 (376)
T PF05049_consen 105 EYLKEVKFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLEN 182 (376)
T ss_dssp HHHHHTTGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHH
T ss_pred HHHHHccccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHH
Confidence 343 45677666655 33556777888999999999999999999610 1111 123344445555
Q ss_pred HHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC
Q 006068 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA 257 (662)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~ 257 (662)
+.+.|..+ .+||.+|..+-. .-+...|.+++.+.+|..++
T Consensus 183 L~k~gv~~----P~VFLVS~~dl~------------~yDFp~L~~tL~~dLp~~Kr 222 (376)
T PF05049_consen 183 LQKAGVSE----PQVFLVSSFDLS------------KYDFPKLEETLEKDLPAHKR 222 (376)
T ss_dssp HHCTT-SS------EEEB-TTTTT------------STTHHHHHHHHHHHS-GGGH
T ss_pred HHHcCCCc----CceEEEeCCCcc------------cCChHHHHHHHHHHhHHHHH
Confidence 55555543 468889987532 11688899999999987654
No 331
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.82 E-value=1.2e-08 Score=98.04 Aligned_cols=64 Identities=30% Similarity=0.332 Sum_probs=46.6
Q ss_pred CeeEEEEeCCCCccc----hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH-cCCCcEEEeccC
Q 006068 118 ENELNMVDTPGHADF----GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK-YGLRPILLLNKV 181 (662)
Q Consensus 118 ~~~iniIDTPGh~dF----~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~-~~lp~IvviNKi 181 (662)
...+.||||||..+. ...+..++..+|.+|+|+++......+....+..... .+-..|+|+||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 457999999997552 2567788899999999999998776555555554444 455567888985
No 332
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.81 E-value=2e-07 Score=97.40 Aligned_cols=142 Identities=16% Similarity=0.212 Sum_probs=86.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchH----
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGG---- 134 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~---- 134 (662)
.||.++|..|.|||||++.|+........ ...+.......+..++......+.-++ .+++||||||+.|...
T Consensus 5 fnImVvG~sG~GKTTFIntL~~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~ 82 (281)
T PF00735_consen 5 FNIMVVGESGLGKTTFINTLFNSDIISED--SSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDC 82 (281)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSS-----------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHH
T ss_pred EEEEEECCCCCCHHHHHHHHHhccccccc--ccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhh
Confidence 69999999999999999999986432111 000111112333445554444444333 5789999999876321
Q ss_pred ----------HHHHHH-------------hhcceEEEEeeCC-CCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHH
Q 006068 135 ----------EVERVV-------------GMVEGAILVVDAG-EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEER 190 (662)
Q Consensus 135 ----------ev~~~l-------------~~aD~aIlVVDa~-~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~ 190 (662)
....++ ..+|++|+.++++ .|+.+.+.+.++.+.. .+++|-||.|.|. ..+++
T Consensus 83 ~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~--lt~~e 159 (281)
T PF00735_consen 83 WEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADT--LTPEE 159 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGG--S-HHH
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccc--cCHHH
Confidence 111222 1257899999975 6888888888777654 4888999999998 44666
Q ss_pred HHHHHHHHHHHHHhcCC
Q 006068 191 CDEVESLVFDLFANLGA 207 (662)
Q Consensus 191 ~~ei~~~v~~l~~~~g~ 207 (662)
+......+.+-+...+.
T Consensus 160 l~~~k~~i~~~l~~~~I 176 (281)
T PF00735_consen 160 LQAFKQRIREDLEENNI 176 (281)
T ss_dssp HHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHcCc
Confidence 67777777777765543
No 333
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.75 E-value=4.9e-08 Score=96.99 Aligned_cols=103 Identities=16% Similarity=0.216 Sum_probs=65.3
Q ss_pred CeeEEEEeCCCC--ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHH
Q 006068 118 ENELNMVDTPGH--ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVE 195 (662)
Q Consensus 118 ~~~iniIDTPGh--~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~ 195 (662)
+....+|+|.|- .... . -..+|.+|+|+|+.++...+.. ...+....-++++||+|+.+........+.
T Consensus 91 ~~D~iiIEt~G~~l~~~~---~--~~l~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 91 PLEMVFIESGGDNLSATF---S--PELADLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CCCEEEEECCCCCccccc---c--hhhhCcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccccccccHHHHH
Confidence 457889999993 2211 1 1236899999999887553221 111222334899999999642222223333
Q ss_pred HHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 196 ~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+.+..+ .. ..|++++||++|+ |+++++++|.++.
T Consensus 162 ~~~~~~----~~-----~~~i~~~Sa~~g~--------------gi~el~~~i~~~~ 195 (199)
T TIGR00101 162 RDAKKM----RG-----EKPFIFTNLKTKE--------------GLDTVIDWIEHYA 195 (199)
T ss_pred HHHHHh----CC-----CCCEEEEECCCCC--------------CHHHHHHHHHhhc
Confidence 333332 11 2579999999999 9999999998764
No 334
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=98.74 E-value=3.9e-08 Score=90.48 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=118.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|....|||||+-........ ..-+...|+...-+..++..-...+.|||..|+.+|.....-+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~d----------e~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPia 89 (205)
T KOG1673|consen 20 SLKVGLLGDAQIGKTSLMVKYVQNEYD----------EEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIA 89 (205)
T ss_pred EEEEEeecccccCceeeehhhhcchhH----------HHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCcee
Confidence 358999999999999999888766221 1122334666666666666666788999999999998877777
Q ss_pred HhhcceEEEEeeCCCCch-hhHHHHHHHHHHcCCC--cEEEeccCCCC-CCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKALKYGLR--PILLLNKVDRP-AVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~~~lp--~IvviNKiD~~-~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
...+-++++++|-+.... ..-.+|.++|+..+.. +|+|.+|.|.- ..+++...++..+...+.+.+++ +
T Consensus 90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnA-------s 162 (205)
T KOG1673|consen 90 CKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQETISRQARKYAKVMNA-------S 162 (205)
T ss_pred ecCcEEEEEEEecCchHHHHHHHHHHHHHhccCCccceEEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCC-------c
Confidence 777788999999766443 4456788999887754 47899999973 34444445555666666555544 5
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++||+-+.+ |++.+|..++..+
T Consensus 163 L~F~Sts~sI--------------Nv~KIFK~vlAkl 185 (205)
T KOG1673|consen 163 LFFCSTSHSI--------------NVQKIFKIVLAKL 185 (205)
T ss_pred EEEeeccccc--------------cHHHHHHHHHHHH
Confidence 8999999998 8999998877654
No 335
>cd01342 Translation_Factor_II_like Translation_Factor_II_like: Elongation factor Tu (EF-Tu) domain II-like proteins. Elongation factor Tu consists of three structural domains, this family represents the second domain. Domain II adopts a beta barrel structure and is involved in binding to charged tRNA. Domain II is found in other proteins such as elongation factor G and translation initiation factor IF-2. This group also includes the C2 subdomain of domain IV of IF-2 that has the same fold as domain II of (EF-Tu). Like IF-2 from certain prokaryotes such as Thermus thermophilus, mitochondrial IF-2 lacks domain II, which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=98.73 E-value=7.6e-08 Score=79.87 Aligned_cols=80 Identities=38% Similarity=0.377 Sum_probs=67.3
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~ 342 (662)
+.++|++++++++.|+++++||++|+|++||.+.+.+.. .....+|.+|+.+. .+++++.|||++++.+.+
T Consensus 1 ~~~~v~~~~~~~~~g~v~~~rv~~G~l~~g~~v~~~~~~-----~~~~~~i~~i~~~~----~~~~~~~aG~~~~~~~~~ 71 (83)
T cd01342 1 LRALVFKVFKDKGRGTVATGRVESGTLKKGDKVRVGPGG-----GGVKGKVKSLKRFK----GEVDEAVAGDIVGIVLKD 71 (83)
T ss_pred CeeEEEEEEEeCCceEEEEEEEeeCEEecCCEEEEecCC-----ceeEEEEeEeEecC----ceeceecCCCEEEEEEcc
Confidence 468899999999999999999999999999999998631 12567888998775 578999999999997765
Q ss_pred C--CccCceee
Q 006068 343 K--PSIGHTVA 351 (662)
Q Consensus 343 ~--~~~GdTl~ 351 (662)
. +.+||+++
T Consensus 72 ~~~~~~g~~l~ 82 (83)
T cd01342 72 KDDIKIGDTLT 82 (83)
T ss_pred ccccCCCCEec
Confidence 4 88999885
No 336
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=1e-06 Score=95.68 Aligned_cols=143 Identities=20% Similarity=0.232 Sum_probs=100.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...-||++|++|+|||||+..|...- +.+...+...-||+. ..+..+|+|+.|| .|+ ..+..
T Consensus 68 PPfIvavvGPpGtGKsTLirSlVrr~---------tk~ti~~i~GPiTvv------sgK~RRiTflEcp--~Dl-~~miD 129 (1077)
T COG5192 68 PPFIVAVVGPPGTGKSTLIRSLVRRF---------TKQTIDEIRGPITVV------SGKTRRITFLECP--SDL-HQMID 129 (1077)
T ss_pred CCeEEEeecCCCCChhHHHHHHHHHH---------HHhhhhccCCceEEe------ecceeEEEEEeCh--HHH-HHHHh
Confidence 35678899999999999999998762 111122223334443 3456899999999 443 44556
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEE-EeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPIL-LLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~Iv-viNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
....+|.+||+||+.-|..-.|.+++..+..+|+|.|+ |++..|+.. ++..+.++.+.+..-|...-+. ..-.|
T Consensus 130 vaKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk-~~stLr~~KKrlkhRfWtEiyq----GaKlF 204 (1077)
T COG5192 130 VAKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFK-NPSTLRSIKKRLKHRFWTEIYQ----GAKLF 204 (1077)
T ss_pred HHHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeeccccc-ChHHHHHHHHHHhhhHHHHHcC----CceEE
Confidence 67889999999999999999999999999999999865 789999854 3444555666555444321111 12378
Q ss_pred EcccccC
Q 006068 218 YASAKEG 224 (662)
Q Consensus 218 ~~SA~~g 224 (662)
+.|...+
T Consensus 205 ylsgV~n 211 (1077)
T COG5192 205 YLSGVEN 211 (1077)
T ss_pred Eeccccc
Confidence 8886644
No 337
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.69 E-value=2.6e-07 Score=92.75 Aligned_cols=114 Identities=18% Similarity=0.246 Sum_probs=72.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch-------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------- 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------- 133 (662)
.+|+++|..|+||||++|.|++..-... .......|.........+.+..+++|||||..|-.
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~----------~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~~~~~~~ 70 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKS----------GSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDGSDEEII 70 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS------------TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTEEHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceee----------ccccCCcccccceeeeeecceEEEEEeCCCCCCCcccHHHHH
Confidence 4799999999999999999997732111 01122344455555668899999999999976521
Q ss_pred HHHHHHH----hhcceEEEEeeCCCCchhhHHHHHHHHHH-cCC----CcEEEeccCCCCC
Q 006068 134 GEVERVV----GMVEGAILVVDAGEGPLAQTKFVLAKALK-YGL----RPILLLNKVDRPA 185 (662)
Q Consensus 134 ~ev~~~l----~~aD~aIlVVDa~~G~~~qt~~~l~~~~~-~~l----p~IvviNKiD~~~ 185 (662)
.++.+++ ...+++|||+... ......+..++.+.+ +|- -.||+.+..|...
T Consensus 71 ~~i~~~l~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~ 130 (212)
T PF04548_consen 71 REIKRCLSLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELE 130 (212)
T ss_dssp HHHHHHHHHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGT
T ss_pred HHHHHHHHhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccc
Confidence 2233333 2368899999987 566666666666554 343 3577788888644
No 338
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.68 E-value=7.1e-07 Score=82.17 Aligned_cols=167 Identities=18% Similarity=0.201 Sum_probs=109.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC--CccccccccccccccceeEeeeEEEEEec---CeeEEEEeCCCCccch
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI--PHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFG 133 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~--~~~~v~D~~~~E~ergiTi~~~~~~~~~~---~~~iniIDTPGh~dF~ 133 (662)
+.-+|+++|.-++|||+++++|++...... ...++-|.. ..+++.+ ...+.|.||.|..+..
T Consensus 8 k~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY-------------~~svet~rgarE~l~lyDTaGlq~~~ 74 (198)
T KOG3883|consen 8 KVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIY-------------VASVETDRGAREQLRLYDTAGLQGGQ 74 (198)
T ss_pred cceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhhe-------------eEeeecCCChhheEEEeecccccCch
Confidence 345899999999999999999998865322 223333321 1222221 2478999999998885
Q ss_pred HHH-HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc-----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006068 134 GEV-ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (662)
Q Consensus 134 ~ev-~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~ 207 (662)
.+. ..++..+|+.+||+|..+....|-.++++.-.+. .+|++|..||+|+.+ +.+.+....+. ..+.
T Consensus 75 ~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~--p~~vd~d~A~~--Wa~r--- 147 (198)
T KOG3883|consen 75 QELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE--PREVDMDVAQI--WAKR--- 147 (198)
T ss_pred hhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc--chhcCHHHHHH--HHhh---
Confidence 444 4567889999999999887666766666554333 478899999999943 32211111111 1111
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCc
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPF 263 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~ 263 (662)
+ .+-.+.++|.... .+-+.|..+...+..|.....-|+
T Consensus 148 --E--kvkl~eVta~dR~--------------sL~epf~~l~~rl~~pqskS~Fpl 185 (198)
T KOG3883|consen 148 --E--KVKLWEVTAMDRP--------------SLYEPFTYLASRLHQPQSKSTFPL 185 (198)
T ss_pred --h--heeEEEEEeccch--------------hhhhHHHHHHHhccCCcccccCcc
Confidence 1 1336788888776 777888888888877765443343
No 339
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.66 E-value=1.4e-07 Score=88.02 Aligned_cols=114 Identities=20% Similarity=0.174 Sum_probs=81.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
.-++.++|--|+|||||++.|-...-... --|.......+...+.+++-+|..||..-..-+..+
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~qh---------------vPTlHPTSE~l~Ig~m~ftt~DLGGH~qArr~wkdy 84 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLGQH---------------VPTLHPTSEELSIGGMTFTTFDLGGHLQARRVWKDY 84 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccccc---------------CCCcCCChHHheecCceEEEEccccHHHHHHHHHHH
Confidence 45899999999999999997754422111 112222333345678899999999999888888889
Q ss_pred HhhcceEEEEeeCCCCc-hhhHHHHHHHH----HHcCCCcEEEeccCCCCCCCH
Q 006068 140 VGMVEGAILVVDAGEGP-LAQTKFVLAKA----LKYGLRPILLLNKVDRPAVSE 188 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~-~~qt~~~l~~~----~~~~lp~IvviNKiD~~~~~~ 188 (662)
+..+|+++++|||.+.. +...+..++.+ .-..+|+++..||+|.+.+-.
T Consensus 85 f~~v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~s 138 (193)
T KOG0077|consen 85 FPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAAS 138 (193)
T ss_pred HhhhceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCccc
Confidence 99999999999987642 22233333222 235899999999999987653
No 340
>cd04089 eRF3_II eRF3_II: domain II of the eukaryotic class II release factor (eRF3). In eukaryotes, translation termination is mediated by two interacting release factors, eRF1 and eRF3, which act as class I and II factors, respectively. eRF1 functions as an omnipotent release factor, decoding all three stop codons and triggering the release of the nascent peptide catalyzed by the ribsome. eRF3 is a GTPase, which enhances the termination efficiency by stimulating the eRF1 activity in a GTP-dependent manner. Sequence comparison of class II release factors with elongation factors shows that eRF3 is more similar to eEF1alpha whereas prokaryote RF3 is more similar to EF-G, implying that their precise function may differ. Only eukaryote RF3s are found in this group. Saccharomyces cerevisiae eRF3 (Sup35p) is a translation termination factor which is divided into three regions N, M and a C-terminal eEF1a-like region essential for translation termination. Sup35NM is a non-pathogenic prion-li
Probab=98.65 E-value=1.7e-07 Score=79.44 Aligned_cols=78 Identities=23% Similarity=0.416 Sum_probs=64.4
Q ss_pred CceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--c
Q 006068 262 PFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--A 339 (662)
Q Consensus 262 p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~ 339 (662)
||++.|.+++... |.+..|||.+|++++||.|.+.+.+ ...+|++|.... .++++|.|||.+++ .
T Consensus 1 plr~~I~~v~~~~--g~vv~G~v~~G~i~~G~~v~i~P~~-------~~~~V~si~~~~----~~~~~a~aGd~v~l~l~ 67 (82)
T cd04089 1 PLRLPIIDKYKDM--GTVVLGKVESGTIKKGDKLLVMPNK-------TQVEVLSIYNED----VEVRYARPGENVRLRLK 67 (82)
T ss_pred CeEEEEEeEEEcC--CEEEEEEEeeeEEecCCEEEEeCCC-------cEEEEEEEEECC----EECCEECCCCEEEEEec
Confidence 7899999988653 8999999999999999999999753 457889987653 68999999999987 3
Q ss_pred CcC--CCccCceeee
Q 006068 340 GMT--KPSIGHTVAN 352 (662)
Q Consensus 340 gl~--~~~~GdTl~~ 352 (662)
+++ ++..||.||+
T Consensus 68 ~i~~~~v~~G~vl~~ 82 (82)
T cd04089 68 GIEEEDISPGFVLCS 82 (82)
T ss_pred CCCHHHCCCCCEEeC
Confidence 443 5788998874
No 341
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=98.64 E-value=4.8e-08 Score=105.24 Aligned_cols=149 Identities=19% Similarity=0.222 Sum_probs=90.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---- 134 (662)
..|++.|+|.+|+|||||++.+....- ......-+|-..-..++.|+-..++++||||.-|---
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradv------------evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN 234 (620)
T KOG1490|consen 167 NTRTLLVCGYPNVGKSSFNNKVTRADD------------EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRN 234 (620)
T ss_pred CcCeEEEecCCCCCcHhhccccccccc------------ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhh
Confidence 468999999999999999988876521 1111123333445566777778999999999776322
Q ss_pred --HHHHHHhhc---ceEEEEeeCCC--Cc--hhhHHHHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH
Q 006068 135 --EVERVVGMV---EGAILVVDAGE--GP--LAQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (662)
Q Consensus 135 --ev~~~l~~a---D~aIlVVDa~~--G~--~~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~ 203 (662)
|....-.+| -+||++.|-.+ |- ..|- .++..++. .+.|.|+|+||+|... ++.+.+-.+++.+-+.
T Consensus 235 ~IEmqsITALAHLraaVLYfmDLSe~CGySva~Qv-kLfhsIKpLFaNK~~IlvlNK~D~m~--~edL~~~~~~ll~~~~ 311 (620)
T KOG1490|consen 235 IIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQV-KLYHSIKPLFANKVTILVLNKIDAMR--PEDLDQKNQELLQTII 311 (620)
T ss_pred HHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHH-HHHHHhHHHhcCCceEEEeecccccC--ccccCHHHHHHHHHHH
Confidence 222222223 24788888654 32 2332 22333322 3889999999999843 2222222333333333
Q ss_pred hcCCCCcCCCccEEEcccccCccCC
Q 006068 204 NLGATDEQLDFPVLYASAKEGWASS 228 (662)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~ 228 (662)
+.| .+|++..|..+.++..
T Consensus 312 ~~~------~v~v~~tS~~~eegVm 330 (620)
T KOG1490|consen 312 DDG------NVKVVQTSCVQEEGVM 330 (620)
T ss_pred hcc------CceEEEecccchhcee
Confidence 222 3789999999888544
No 342
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.62 E-value=3.5e-07 Score=90.80 Aligned_cols=83 Identities=22% Similarity=0.300 Sum_probs=64.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------ch
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------FG 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d-------F~ 133 (662)
-+|+++|.+.+|||||+..+.... .......-.|..+-...+.|++-.|+++|.||... -+
T Consensus 63 aRValIGfPSVGKStlLs~iT~T~------------SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG 130 (364)
T KOG1486|consen 63 ARVALIGFPSVGKSTLLSKITSTH------------SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG 130 (364)
T ss_pred eEEEEecCCCccHHHHHHHhhcch------------hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC
Confidence 479999999999999999998652 12222235566677778899999999999999654 24
Q ss_pred HHHHHHHhhcceEEEEeeCCCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEG 155 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G 155 (662)
.++....+.+|.+++|+||+.+
T Consensus 131 RQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 131 RQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred ceEEEEeecccEEEEEecCCcc
Confidence 5666778899999999999874
No 343
>cd03695 CysN_NodQ_II CysN_NodQ_II: This subfamily represents the domain II of the large subunit of ATP sulfurylase (ATPS): CysN or the N-terminal portion of NodQ, found mainly in proteobacteria and homologous to the domain II of EF-Tu. Escherichia coli ATPS consists of CysN and a smaller subunit CysD and CysN. ATPS produces adenosine-5'-phosphosulfate (APS) from ATP and sulfate, coupled with GTP hydrolysis. In the subsequent reaction APS is phosphorylated by an APS kinase (CysC), to produce 3'-phosphoadenosine-5'-phosphosulfate (PAPS) for use in amino acid (aa) biosynthesis. The Rhizobiaceae group (alpha-proteobacteria) appears to carry out the same chemistry for the sufation of a nodulation factor. In Rhizobium meliloti, a the hererodimeric complex comprised of NodP and NodQ appears to possess both ATPS and APS kinase activities. The N and C termini of NodQ correspond to CysN and CysC, respectively. Other eubacteria, Archaea, and eukaryotes use a different ATP sulfurylase, which sho
Probab=98.61 E-value=3e-07 Score=77.71 Aligned_cols=79 Identities=24% Similarity=0.307 Sum_probs=65.3
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG 340 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~g 340 (662)
|++.|.+++.....|+.+.|||.+|++++||+|.+.|.+ ...+|++|..++ .+++.|.|||.|++ .+
T Consensus 1 lr~~V~dv~k~~~~~~~v~Gkv~~G~v~~Gd~v~~~P~~-------~~~~V~si~~~~----~~~~~a~aGd~v~l~l~~ 69 (81)
T cd03695 1 FRFPVQYVIRPNADFRGYAGTIASGSIRVGDEVVVLPSG-------KTSRVKSIETFD----GELDEAGAGESVTLTLED 69 (81)
T ss_pred CEeeEEEEEeeCCCcEEEEEEEccceEECCCEEEEcCCC-------CeEEEEEEEECC----cEeCEEcCCCEEEEEECC
Confidence 678899988876677789999999999999999999753 467899998663 58999999999977 34
Q ss_pred cCCCccCceeee
Q 006068 341 MTKPSIGHTVAN 352 (662)
Q Consensus 341 l~~~~~GdTl~~ 352 (662)
-+++..||.||.
T Consensus 70 ~~~i~~G~vl~~ 81 (81)
T cd03695 70 EIDVSRGDVIVA 81 (81)
T ss_pred ccccCCCCEEeC
Confidence 456889999873
No 344
>PTZ00258 GTP-binding protein; Provisional
Probab=98.59 E-value=2.5e-07 Score=100.28 Aligned_cols=83 Identities=20% Similarity=0.267 Sum_probs=63.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-----------------eeE
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NEL 121 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-----------------~~i 121 (662)
.-..|+|+|.+|+|||||+++|.... .......+.|+......+.+.+ .++
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~------------~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi 87 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQ------------VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQL 87 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCc------------ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCe
Confidence 34589999999999999999997652 2333445777777776666653 359
Q ss_pred EEEeCCCCcc-------chHHHHHHHhhcceEEEEeeCC
Q 006068 122 NMVDTPGHAD-------FGGEVERVVGMVEGAILVVDAG 153 (662)
Q Consensus 122 niIDTPGh~d-------F~~ev~~~l~~aD~aIlVVDa~ 153 (662)
.++||||... ........++.+|++++|||+.
T Consensus 88 ~lvDtpGLv~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 88 DITDIAGLVKGASEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred EEEECCCcCcCCcchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 9999999542 4446677889999999999985
No 345
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.55 E-value=1.5e-07 Score=97.67 Aligned_cols=80 Identities=20% Similarity=0.256 Sum_probs=60.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCe-----------------eEEEEe
Q 006068 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-----------------ELNMVD 125 (662)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~-----------------~iniID 125 (662)
|+|+|.+++|||||+++|+... .......+.|+......+.+.+. .+.++|
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~------------~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD 68 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAG------------AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVD 68 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCC------------CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEE
Confidence 5899999999999999998762 12333456777766666665543 599999
Q ss_pred CCCCcc-------chHHHHHHHhhcceEEEEeeCCC
Q 006068 126 TPGHAD-------FGGEVERVVGMVEGAILVVDAGE 154 (662)
Q Consensus 126 TPGh~d-------F~~ev~~~l~~aD~aIlVVDa~~ 154 (662)
|||..+ ++......++.+|++++|||+.+
T Consensus 69 ~pGl~~~a~~~~glg~~fL~~i~~~D~li~VV~~f~ 104 (274)
T cd01900 69 IAGLVKGASKGEGLGNKFLSHIREVDAIAHVVRCFE 104 (274)
T ss_pred CCCcCCCCchhhHHHHHHHHHHHhCCEEEEEEeCcC
Confidence 999543 34466677889999999999853
No 346
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=1.3e-07 Score=90.19 Aligned_cols=144 Identities=18% Similarity=0.144 Sum_probs=93.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
.++.++++|..|.||||++.+.+...+...+..++ |.........-..+..+++.|||.|++.|.+....
T Consensus 9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~----------Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdg 78 (216)
T KOG0096|consen 9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATL----------GVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDG 78 (216)
T ss_pred ceEEEEEecCCcccccchhhhhhcccceecccCcc----------eeEEeeeeeecccCcEEEEeeecccceeecccccc
Confidence 47899999999999999999999764422221111 22222221111222478999999999999887777
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHH-HHHH--HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVL-AKAL--KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l-~~~~--~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.-...+|++++|....+.-+...-| +.+. ..++|++++.||.|..... +..+...+.. ..++-
T Consensus 79 yyI~~qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------~k~k~v~~~r-------kknl~ 145 (216)
T KOG0096|consen 79 YYIQGQCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARK------VKAKPVSFHR-------KKNLQ 145 (216)
T ss_pred cEEecceeEEEeeeeehhhhhcchHHHHHHHHHhcCCCeeeeccceeccccc------cccccceeee-------cccce
Confidence 77778889999998876655444322 2222 2368999999999974321 1211112111 12345
Q ss_pred EEEcccccCc
Q 006068 216 VLYASAKEGW 225 (662)
Q Consensus 216 vi~~SA~~g~ 225 (662)
.+++||+++.
T Consensus 146 y~~iSaksn~ 155 (216)
T KOG0096|consen 146 YYEISAKSNY 155 (216)
T ss_pred eEEeeccccc
Confidence 8999999988
No 347
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.54 E-value=3.2e-07 Score=95.28 Aligned_cols=162 Identities=17% Similarity=0.257 Sum_probs=90.1
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC-------Ccccccccccccccccee---EeeeEE-------------E
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------PHERAMDSISLERERGIT---IASKVT-------------G 113 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------~~~~v~D~~~~E~ergiT---i~~~~~-------------~ 113 (662)
.....-|.|+|.+|+|||||+++++....... ...+.-|.... +..|+. +..... .
T Consensus 101 ~~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~~~~~VI~gD~~t~~Da~rI-~~~g~pvvqi~tG~~Chl~a~mv~~Al~~ 179 (290)
T PRK10463 101 ARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQTVNDAARI-RATGTPAIQVNTGKGCHLDAQMIADAAPR 179 (290)
T ss_pred hcCCeEEEEECCCCCCHHHHHHHHHHHhccCCCEEEECCCcCcHHHHHHH-HhcCCcEEEecCCCCCcCcHHHHHHHHHH
Confidence 34578999999999999999999998642110 01111122111 111221 111000 0
Q ss_pred EEecCeeEEEEeCCCCc-cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHH
Q 006068 114 ISWRENELNMVDTPGHA-DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCD 192 (662)
Q Consensus 114 ~~~~~~~iniIDTPGh~-dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ 192 (662)
+...+..+.||++-|.. . -.+. -+. .+.-+.|++..+|.. + .+++-..+..+-++++||+|+.......++
T Consensus 180 L~~~~~d~liIEnvGnLvc-Pa~f--dlg-e~~~v~vlsV~eg~d-k---plKyp~~f~~ADIVVLNKiDLl~~~~~dle 251 (290)
T PRK10463 180 LPLDDNGILFIENVGNLVC-PASF--DLG-EKHKVAVLSVTEGED-K---PLKYPHMFAAASLMLLNKVDLLPYLNFDVE 251 (290)
T ss_pred HhhcCCcEEEEECCCCccC-CCcc--chh-hceeEEEEECccccc-c---chhccchhhcCcEEEEEhHHcCcccHHHHH
Confidence 11124577888888841 1 0000 011 123357777777632 1 112233446678999999999643222333
Q ss_pred HHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 193 EVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 193 ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+..+.+.. +.. ..+++.+||++|. |+++|+++|.+
T Consensus 252 ~~~~~lr~----lnp-----~a~I~~vSA~tGe--------------Gld~L~~~L~~ 286 (290)
T PRK10463 252 KCIACARE----VNP-----EIEIILISATSGE--------------GMDQWLNWLET 286 (290)
T ss_pred HHHHHHHh----hCC-----CCcEEEEECCCCC--------------CHHHHHHHHHH
Confidence 34333333 221 2569999999999 99999999875
No 348
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=98.54 E-value=3.7e-07 Score=100.38 Aligned_cols=158 Identities=20% Similarity=0.122 Sum_probs=101.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|.-|+|||||+-+|+..........+. .-|+|- ..+.-......|+||+-..+-...+..-+
T Consensus 10 VRIvliGD~G~GKtSLImSL~~eef~~~VP~rl---------~~i~IP---advtPe~vpt~ivD~ss~~~~~~~l~~Ei 77 (625)
T KOG1707|consen 10 VRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRL---------PRILIP---ADVTPENVPTSIVDTSSDSDDRLCLRKEI 77 (625)
T ss_pred eEEEEECCCCccHHHHHHHHHhhhccccccccC---------CccccC---CccCcCcCceEEEecccccchhHHHHHHH
Confidence 469999999999999999999986654432211 123333 22223345689999998777666767788
Q ss_pred hhcceEEEEeeCCCC--chhhHHHHHHHHHHc-----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 141 GMVEGAILVVDAGEG--PLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G--~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+.||.+++|++.++. +..-+.+|+-..++. ++|+|+|.||+|.........+....-+..-|.+..
T Consensus 78 rkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiE------- 150 (625)
T KOG1707|consen 78 RKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIE------- 150 (625)
T ss_pred hhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHH-------
Confidence 999999999987653 233445666666654 589999999999854333211111112222222221
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
..+.|||++-. ++.++|..-.+.+
T Consensus 151 -tciecSA~~~~--------------n~~e~fYyaqKaV 174 (625)
T KOG1707|consen 151 -TCIECSALTLA--------------NVSELFYYAQKAV 174 (625)
T ss_pred -HHHhhhhhhhh--------------hhHhhhhhhhhee
Confidence 15788998877 6666666554444
No 349
>cd03697 EFTU_II EFTU_II: Elongation factor Tu domain II. Elongation factors Tu (EF-Tu) are three-domain GTPases with an essential function in the elongation phase of mRNA translation. The GTPase center of EF-Tu is in the N-terminal domain (domain I), also known as the catalytic or G-domain. The G-domain is composed of about 200 amino acid residues, arranged into a predominantly parallel six-stranded beta-sheet core surrounded by seven a-helices. Non-catalytic domains II and III are beta-barrels of seven and six, respectively, antiparallel beta-strands that share an extended interface. Either non-catalytic domain is composed of about 100 amino acid residues. EF-Tu proteins exist in two principal conformations: in a compact one, EF-Tu*GTP, with tight interfaces between all three domains and a high affinity for aminoacyl-tRNA, and in an open one, EF-Tu*GDP, with essentially no G-domain-domain II interactions and a low affinity for aminoacyl-tRNA. EF-Tu has approximately a 100-fold higher
Probab=98.54 E-value=3.7e-07 Score=78.26 Aligned_cols=82 Identities=27% Similarity=0.355 Sum_probs=66.7
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG 340 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~g 340 (662)
|++.|.+++..++.|.+..|||.+|++++||.|.+.+... ....+|++|.... .++++|.|||.|++ .+
T Consensus 1 ~r~~V~~v~~~~g~G~vv~G~v~~G~v~~gd~v~~~p~~~-----~~~~~V~si~~~~----~~~~~a~~G~~v~l~l~~ 71 (87)
T cd03697 1 FLMPIEDVFSIPGRGTVVTGRIERGTIKVGDEVEIVGFGE-----TLKTTVTGIEMFR----KTLDEAEAGDNVGVLLRG 71 (87)
T ss_pred CEeeEEEEEeCCCcEEEEEEEECCCCCccCCEEEEeCCCC-----CceEEEEEEEECC----cCCCEECCCCEEEEEECC
Confidence 5788888888888999999999999999999999986421 1457888987653 57899999999877 45
Q ss_pred cC--CCccCceeeec
Q 006068 341 MT--KPSIGHTVANT 353 (662)
Q Consensus 341 l~--~~~~GdTl~~~ 353 (662)
++ ++..|+.||++
T Consensus 72 ~~~~~v~rG~vl~~~ 86 (87)
T cd03697 72 VKREDVERGMVLAKP 86 (87)
T ss_pred CCHHHcCCccEEecC
Confidence 53 57889999875
No 350
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.50 E-value=5.3e-07 Score=85.74 Aligned_cols=95 Identities=23% Similarity=0.258 Sum_probs=70.3
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.....++++.+|.+|+|+|+.++...+...+...+...+.|+++|+||+|+.. ..... ....+....
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~--~~~~~----~~~~~~~~~------- 69 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVP--KEVLE----KWKSIKESE------- 69 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCC--HHHHH----HHHHHHHhC-------
Confidence 34566777889999999999887777776676666677999999999999843 21111 111222211
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
..|++++||++|. |+++|++.|.+.+|.
T Consensus 70 ~~~~~~iSa~~~~--------------gi~~L~~~l~~~~~~ 97 (156)
T cd01859 70 GIPVVYVSAKERL--------------GTKILRRTIKELAKI 97 (156)
T ss_pred CCcEEEEEccccc--------------cHHHHHHHHHHHHhh
Confidence 2478999999998 999999999998874
No 351
>cd03696 selB_II selB_II: this subfamily represents the domain of elongation factor SelB, homologous to domain II of EF-Tu. SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.
Probab=98.49 E-value=6.3e-07 Score=76.10 Aligned_cols=79 Identities=29% Similarity=0.413 Sum_probs=65.3
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG 340 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~g 340 (662)
|++.|.+++..+..|.++.|||.+|++++||++.+.+.+ ...+|++|...+ .++++|.|||.|++ .+
T Consensus 1 lr~~i~~~~~~~~~g~vv~G~v~sG~i~~g~~v~~~p~~-------~~~~V~sI~~~~----~~~~~a~aGd~v~i~l~~ 69 (83)
T cd03696 1 FRLPIDRVFTVKGQGTVVTGTVLSGSVKVGDKVEILPLG-------EETRVRSIQVHG----KDVEEAKAGDRVALNLTG 69 (83)
T ss_pred CEEEEEEEEEcCCcEEEEEEEEeecEEeCCCEEEECCCC-------ceEEEEEEEECC----cCcCEEcCCCEEEEEEcC
Confidence 578899999888899999999999999999999998743 467888987653 57899999999877 45
Q ss_pred c--CCCccCceeee
Q 006068 341 M--TKPSIGHTVAN 352 (662)
Q Consensus 341 l--~~~~~GdTl~~ 352 (662)
+ +++..||.||+
T Consensus 70 ~~~~~i~~G~vl~~ 83 (83)
T cd03696 70 VDAKDLERGDVLSS 83 (83)
T ss_pred CCHHHcCCccEEcC
Confidence 4 36778998863
No 352
>cd03694 GTPBP_II Domain II of the GP-1 family of GTPase. This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.
Probab=98.48 E-value=1.1e-06 Score=75.27 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=66.5
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG 340 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~g 340 (662)
|.+.|.+++..+..|.++.|||.+|++++||.+.+.|.+.+ .....+|++|... ..++++|.|||.+++ .+
T Consensus 1 ~~~~I~~vf~v~g~GtVv~G~v~~G~v~~g~~v~~~P~~~g---~~~~~~V~sI~~~----~~~~~~a~aGd~v~l~l~~ 73 (87)
T cd03694 1 AEFQIDEIYSVPGVGTVVGGTVSKGVIRLGDTLLLGPDQDG---SFRPVTVKSIHRN----RSPVRVVRAGQSASLALKK 73 (87)
T ss_pred CEEEEEeEEEcCCcceEEEEEEecCEEeCCCEEEECCCCCC---CEeEEEEEEEEEC----CeECCEECCCCEEEEEEcC
Confidence 56888888888889999999999999999999999975311 2246789999765 368999999999877 45
Q ss_pred cC--CCccCceeee
Q 006068 341 MT--KPSIGHTVAN 352 (662)
Q Consensus 341 l~--~~~~GdTl~~ 352 (662)
++ ++..|+.||+
T Consensus 74 i~~~~i~~G~vl~~ 87 (87)
T cd03694 74 IDRSLLRKGMVLVS 87 (87)
T ss_pred CCHHHcCCccEEeC
Confidence 43 5778988874
No 353
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.45 E-value=5.9e-06 Score=87.08 Aligned_cols=142 Identities=17% Similarity=0.237 Sum_probs=95.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchH---
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGG--- 134 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~--- 134 (662)
..||.++|..|.||||++|.|+.+.-.... .+-+.......+++.+......+.-++ ..+|+|||||..||..
T Consensus 23 ~f~im~~G~sG~GKttfiNtL~~~~l~~~~--~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs~ 100 (373)
T COG5019 23 DFTIMVVGESGLGKTTFINTLFGTSLVDET--EIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNSK 100 (373)
T ss_pred ceEEEEecCCCCchhHHHHhhhHhhccCCC--CccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCccccccccc
Confidence 579999999999999999999988332111 011111111345555665555555555 4688999999888642
Q ss_pred -----------HHHHHH-------h-------hcceEEEEee-CCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCH
Q 006068 135 -----------EVERVV-------G-------MVEGAILVVD-AGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE 188 (662)
Q Consensus 135 -----------ev~~~l-------~-------~aD~aIlVVD-a~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~ 188 (662)
+...+| + .+++||+.+- ..+|+.+.+.+.++.+.+ .+.+|-||-|.|. ...
T Consensus 101 ~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~--lT~ 177 (373)
T COG5019 101 CWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADT--LTD 177 (373)
T ss_pred cHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeecccc--CCH
Confidence 111222 1 2567898888 468899999988887653 5778889999998 445
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 006068 189 ERCDEVESLVFDLFANLG 206 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g 206 (662)
+.+.+..+.+...+....
T Consensus 178 ~El~~~K~~I~~~i~~~n 195 (373)
T COG5019 178 DELAEFKERIREDLEQYN 195 (373)
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 566667777776665543
No 354
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=98.40 E-value=3.2e-08 Score=93.86 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=106.7
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC---eeEEEEeCCCCccch
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE---NELNMVDTPGHADFG 133 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~---~~iniIDTPGh~dF~ 133 (662)
.....++.|+|.-++|||+++.+.+.+.+...+..++ | .+.....+.|++ .++.|||..|+..|+
T Consensus 22 r~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtI----------g--vdfalkVl~wdd~t~vRlqLwdIagQerfg 89 (229)
T KOG4423|consen 22 REHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATI----------G--VDFALKVLQWDDKTIVRLQLWDIAGQERFG 89 (229)
T ss_pred hhhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHH----------h--HHHHHHHhccChHHHHHHHHhcchhhhhhc
Confidence 3567899999999999999999999885432222221 1 122222344554 478999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHH-----cC--CCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK-----YG--LRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~-----~~--lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~ 205 (662)
....-+++.+.++.+|+|.+...... +..+.+.+.. .| +|+++..||+|...... .+.-..+.++.++.
T Consensus 90 ~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~---~~~~~~~d~f~ken 166 (229)
T KOG4423|consen 90 NMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK---NEATRQFDNFKKEN 166 (229)
T ss_pred ceEEEEecCCcceEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhh---hhhHHHHHHHHhcc
Confidence 98888899999999999976654433 3333332221 13 34678889999854322 22223444444555
Q ss_pred CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|+.. ++.+|++.+. ++++....+++.+
T Consensus 167 gf~g------wtets~Kenk--------------ni~Ea~r~lVe~~ 193 (229)
T KOG4423|consen 167 GFEG------WTETSAKENK--------------NIPEAQRELVEKI 193 (229)
T ss_pred Cccc------eeeecccccc--------------ChhHHHHHHHHHH
Confidence 6643 7999999988 6766666665544
No 355
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.39 E-value=9.9e-06 Score=91.58 Aligned_cols=115 Identities=14% Similarity=0.141 Sum_probs=69.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------ 133 (662)
..+|+++|.+|+|||||+|.|++...... .....++| ........+.+..+++|||||..+..
T Consensus 118 slrIvLVGKTGVGKSSLINSILGekvf~v----------ss~~~~TT-r~~ei~~~idG~~L~VIDTPGL~dt~~dq~~n 186 (763)
T TIGR00993 118 SLNILVLGKSGVGKSATINSIFGEVKFST----------DAFGMGTT-SVQEIEGLVQGVKIRVIDTPGLKSSASDQSKN 186 (763)
T ss_pred ceEEEEECCCCCCHHHHHHHHhccccccc----------cCCCCCce-EEEEEEEEECCceEEEEECCCCCccccchHHH
Confidence 46899999999999999999998632110 00112333 23333445678999999999988742
Q ss_pred HH----HHHHHh--hcceEEEEeeCCCC-chhhHHHHHHHHHH-cCC----CcEEEeccCCCCC
Q 006068 134 GE----VERVVG--MVEGAILVVDAGEG-PLAQTKFVLAKALK-YGL----RPILLLNKVDRPA 185 (662)
Q Consensus 134 ~e----v~~~l~--~aD~aIlVVDa~~G-~~~qt~~~l~~~~~-~~l----p~IvviNKiD~~~ 185 (662)
.+ +..++. .+|++|+|...... ........++.+.+ +|- -.|||.+..|...
T Consensus 187 eeILk~Ik~~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 187 EKILSSVKKFIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 12 222333 36888888764322 21233344444432 232 3688999999853
No 356
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.37 E-value=2.1e-06 Score=83.11 Aligned_cols=154 Identities=18% Similarity=0.286 Sum_probs=87.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCc-------cccccccccccccceeE---eee--E---EEE----------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPH-------ERAMDSISLERERGITI---ASK--V---TGI---------- 114 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~-------~~v~D~~~~E~ergiTi---~~~--~---~~~---------- 114 (662)
.+.|.+.|++|||||||+++++......... .+..|.....+..|..+ .+. . .++
T Consensus 13 ~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~CH~da~m~~~ai~~l~~ 92 (202)
T COG0378 13 MLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGCHLDASMNLEAIEELVL 92 (202)
T ss_pred eEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCccCCcHHHHHHHHHHHhh
Confidence 4789999999999999999999876432110 11122222222122221 111 1 000
Q ss_pred EecCeeEEEEeCCCC--ccchHHHHHHHhhcc-eEEEEeeCCCCchhhHHHHHHHHHHcCCC-----cEEEeccCCCCCC
Q 006068 115 SWRENELNMVDTPGH--ADFGGEVERVVGMVE-GAILVVDAGEGPLAQTKFVLAKALKYGLR-----PILLLNKVDRPAV 186 (662)
Q Consensus 115 ~~~~~~iniIDTPGh--~dF~~ev~~~l~~aD-~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-----~IvviNKiD~~~~ 186 (662)
.+.+..+.||.+.|- ..| .....| .-|+|+|..+|...- +.+=| -++||||.|+...
T Consensus 93 ~~~~~Dll~iEs~GNL~~~~------sp~L~d~~~v~VidvteGe~~P---------~K~gP~i~~aDllVInK~DLa~~ 157 (202)
T COG0378 93 DFPDLDLLFIESVGNLVCPF------SPDLGDHLRVVVIDVTEGEDIP---------RKGGPGIFKADLLVINKTDLAPY 157 (202)
T ss_pred cCCcCCEEEEecCcceeccc------CcchhhceEEEEEECCCCCCCc---------ccCCCceeEeeEEEEehHHhHHH
Confidence 011357888888881 112 123345 789999999986321 11122 3799999999432
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 187 SEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 187 ~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
-...++...+.+. +.. + +.|++++|+++|. |++++++++...
T Consensus 158 v~~dlevm~~da~----~~n--p---~~~ii~~n~ktg~--------------G~~~~~~~i~~~ 199 (202)
T COG0378 158 VGADLEVMARDAK----EVN--P---EAPIIFTNLKTGE--------------GLDEWLRFIEPQ 199 (202)
T ss_pred hCccHHHHHHHHH----HhC--C---CCCEEEEeCCCCc--------------CHHHHHHHHHhh
Confidence 1111122222221 111 1 3689999999999 999999998654
No 357
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=2.3e-05 Score=77.59 Aligned_cols=143 Identities=19% Similarity=0.186 Sum_probs=86.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccc-eeEeeeEEEEEecC--eeEEEEeCCCCccch--
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERG-ITIASKVTGISWRE--NELNMVDTPGHADFG-- 133 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~erg-iTi~~~~~~~~~~~--~~iniIDTPGh~dF~-- 133 (662)
-.+||.++|.+|.|||||++.|....-... ...|. ..+..+. +.+.+....+.-++ .++++|||||+.|+.
T Consensus 45 F~FNIMVVgqSglgkstlinTlf~s~v~~~---s~~~~-~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN 120 (336)
T KOG1547|consen 45 FDFNIMVVGQSGLGKSTLINTLFKSHVSDS---SSSDN-SAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINN 120 (336)
T ss_pred CceEEEEEecCCCCchhhHHHHHHHHHhhc---cCCCc-ccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCc
Confidence 357999999999999999999987532111 11111 2222222 22333333344444 478999999988753
Q ss_pred ------------HHHHHHHh--------------hcceEEEEeeCC-CCchhhHHHHHHHHHHcCCCcEEEeccCCCCCC
Q 006068 134 ------------GEVERVVG--------------MVEGAILVVDAG-EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV 186 (662)
Q Consensus 134 ------------~ev~~~l~--------------~aD~aIlVVDa~-~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~ 186 (662)
.+.+.+|+ .++.+++.+.++ +...+.+.++++.+.+ -+.+|-||-|.|...
T Consensus 121 ~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPVIakaDtlT- 198 (336)
T KOG1547|consen 121 DNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPVIAKADTLT- 198 (336)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeeeEeeccccc-
Confidence 12223332 145688888754 5566777777776543 355677889999743
Q ss_pred CHHHHHHHHHHHHHHHHhcCCC
Q 006068 187 SEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 187 ~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
.++..+..+.+.+-|...+++
T Consensus 199 -leEr~~FkqrI~~el~~~~i~ 219 (336)
T KOG1547|consen 199 -LEERSAFKQRIRKELEKHGID 219 (336)
T ss_pred -HHHHHHHHHHHHHHHHhcCcc
Confidence 333345566666666655543
No 358
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.30 E-value=4.1e-06 Score=86.34 Aligned_cols=147 Identities=24% Similarity=0.229 Sum_probs=96.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCcc------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHAD------ 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~d------ 131 (662)
....|+++|..|+|||||+++|+..+-. ..++. --|.+........ .+..+.+.||-|+..
T Consensus 177 s~pviavVGYTNaGKsTLikaLT~Aal~--p~drL----------FATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~L 244 (410)
T KOG0410|consen 177 SSPVIAVVGYTNAGKSTLIKALTKAALY--PNDRL----------FATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQL 244 (410)
T ss_pred CCceEEEEeecCccHHHHHHHHHhhhcC--ccchh----------heeccchhhhccCCCCcEEEEeechhhhhhCcHHH
Confidence 3568999999999999999999954221 11111 1222222222222 356788999999643
Q ss_pred ---chHHHHHHHhhcceEEEEeeCCCC-chhhHHHHHHHHHHcCCC-------cEEEeccCCCCCCCHHHHHHHHHHHHH
Q 006068 132 ---FGGEVERVVGMVEGAILVVDAGEG-PLAQTKFVLAKALKYGLR-------PILLLNKVDRPAVSEERCDEVESLVFD 200 (662)
Q Consensus 132 ---F~~ev~~~l~~aD~aIlVVDa~~G-~~~qt~~~l~~~~~~~lp-------~IvviNKiD~~~~~~~~~~ei~~~v~~ 200 (662)
|.... .-...+|.+|-|+|..+. ...|-..++..+.+.|+| +|=|=||+|......+.
T Consensus 245 vaAF~ATL-eeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~---------- 313 (410)
T KOG0410|consen 245 VAAFQATL-EEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEE---------- 313 (410)
T ss_pred HHHHHHHH-HHHhhcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccCcc----------
Confidence 33222 223568999999998775 456777789999999996 24466777764432210
Q ss_pred HHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 201 LFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 201 l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+.. -.+++||++|. |+++|++++-..+-
T Consensus 314 --------E~n---~~v~isaltgd--------------gl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 314 --------EKN---LDVGISALTGD--------------GLEELLKAEETKVA 341 (410)
T ss_pred --------ccC---CccccccccCc--------------cHHHHHHHHHHHhh
Confidence 011 15789999998 99999999866543
No 359
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.30 E-value=1.5e-05 Score=84.77 Aligned_cols=140 Identities=16% Similarity=0.199 Sum_probs=92.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccch----
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFG---- 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~---- 133 (662)
-+++.++|..|.|||||+|.|+....... ...+.......+..++......+.-++ ..++++||||..|+.
T Consensus 21 ~ftlmvvG~sGlGKsTfiNsLf~~~l~~~---~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~ 97 (366)
T KOG2655|consen 21 DFTLMVVGESGLGKSTFINSLFLTDLSGN---REVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSN 97 (366)
T ss_pred ceEEEEecCCCccHHHHHHHHHhhhccCC---cccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccc
Confidence 47999999999999999999998733211 111222233333455555555555444 467889999988753
Q ss_pred ----------HHHHHHHh-------------hcceEEEEee-CCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHH
Q 006068 134 ----------GEVERVVG-------------MVEGAILVVD-AGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (662)
Q Consensus 134 ----------~ev~~~l~-------------~aD~aIlVVD-a~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (662)
.....++. .++++|+.+. ..+|+.+.+.+.++.+. ..+.+|-||-|.|.. ..+
T Consensus 98 ~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~-~~vNiIPVI~KaD~l--T~~ 174 (366)
T KOG2655|consen 98 CWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLS-KKVNLIPVIAKADTL--TKD 174 (366)
T ss_pred cchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHh-ccccccceeeccccC--CHH
Confidence 12223331 3577999998 45789999988887664 478889999999984 445
Q ss_pred HHHHHHHHHHHHHHhc
Q 006068 190 RCDEVESLVFDLFANL 205 (662)
Q Consensus 190 ~~~ei~~~v~~l~~~~ 205 (662)
.+....+.+...+...
T Consensus 175 El~~~K~~I~~~i~~~ 190 (366)
T KOG2655|consen 175 ELNQFKKRIRQDIEEH 190 (366)
T ss_pred HHHHHHHHHHHHHHHc
Confidence 5555666665555443
No 360
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.29 E-value=1.7e-06 Score=85.18 Aligned_cols=118 Identities=19% Similarity=0.230 Sum_probs=85.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCCccchHHH--
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHADFGGEV-- 136 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh~dF~~ev-- 136 (662)
-++|.++|.+|+|||++=..+...-- ...-+..|-||+....++.+-| .-+|+||+.|+..|....
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~-----------a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe~fmen~~~ 72 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYI-----------ARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQEEFMENYLS 72 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhh-----------hhhhhccCCcceeeehhhhhhhhheeehhccCCcHHHHHHHHh
Confidence 46899999999999998666653210 0112344888888888887755 789999999999776443
Q ss_pred ---HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc------CCCcEEEeccCCCCCCCH
Q 006068 137 ---ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY------GLRPILLLNKVDRPAVSE 188 (662)
Q Consensus 137 ---~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~------~lp~IvviNKiD~~~~~~ 188 (662)
...++.++.+++|+|+....+..+....+.|.+. ..++++.+.|+|+...+.
T Consensus 73 ~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~ 133 (295)
T KOG3886|consen 73 SQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDA 133 (295)
T ss_pred hcchhhheeheeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccch
Confidence 3477899999999999877666666666655443 334678899999965543
No 361
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=1.2e-05 Score=85.43 Aligned_cols=81 Identities=21% Similarity=0.242 Sum_probs=55.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE------------------ecCeeEE
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS------------------WRENELN 122 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~------------------~~~~~in 122 (662)
.+++|+|-+|+|||||+++++...... ...+-.||......+. +-...+.
T Consensus 3 l~~GIVGlPNVGKSTlFnAlT~~~a~~------------aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve 70 (372)
T COG0012 3 LKIGIVGLPNVGKSTLFNALTKAGAEI------------ANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVE 70 (372)
T ss_pred ceeEEecCCCCcHHHHHHHHHcCCccc------------cCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeE
Confidence 479999999999999999999875211 1111222222211111 1124689
Q ss_pred EEeCCCCcc-------chHHHHHHHhhcceEEEEeeCC
Q 006068 123 MVDTPGHAD-------FGGEVERVVGMVEGAILVVDAG 153 (662)
Q Consensus 123 iIDTPGh~d-------F~~ev~~~l~~aD~aIlVVDa~ 153 (662)
|+|.+|... ++.....-+|.+|+++.|||+.
T Consensus 71 ~vDIAGLV~GAs~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 71 FVDIAGLVKGASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred EEEecccCCCcccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 999999643 5677788899999999999986
No 362
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.25 E-value=1.4e-05 Score=85.04 Aligned_cols=124 Identities=19% Similarity=0.200 Sum_probs=68.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccc--ccc---------ccccccceeEeeeEEE-------------E
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM--DSI---------SLERERGITIASKVTG-------------I 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~--D~~---------~~E~ergiTi~~~~~~-------------~ 114 (662)
....|+++|+.|+||||++..|..........-.+. |.. .....+++.+...... .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~ 192 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA 192 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999876542211111111 111 0122334443221100 0
Q ss_pred EecCeeEEEEeCCCCccch----HHHHHHHh--------hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCC
Q 006068 115 SWRENELNMVDTPGHADFG----GEVERVVG--------MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~dF~----~ev~~~l~--------~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (662)
...++.+.||||||...+. .+.....+ ..+..+||+||..|-.... . .....+.--+.-+++||+|
T Consensus 193 ~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~-a~~f~~~~~~~giIlTKlD 270 (318)
T PRK10416 193 KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-Q-AKAFHEAVGLTGIILTKLD 270 (318)
T ss_pred HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-H-HHHHHhhCCCCEEEEECCC
Confidence 1246899999999975432 34444433 3567899999997642221 1 1111111123468999999
Q ss_pred CC
Q 006068 183 RP 184 (662)
Q Consensus 183 ~~ 184 (662)
..
T Consensus 271 ~t 272 (318)
T PRK10416 271 GT 272 (318)
T ss_pred CC
Confidence 53
No 363
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.24 E-value=7.6e-06 Score=79.22 Aligned_cols=122 Identities=20% Similarity=0.207 Sum_probs=66.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccccccc-----------ccccceeEeeeEEEE-------------Eec
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISL-----------ERERGITIASKVTGI-------------SWR 117 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~-----------E~ergiTi~~~~~~~-------------~~~ 117 (662)
.++++|++|+||||++..|..........-.+.|.+.. -.+.|+.+....... ...
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999988887543211111111111100 112233332211100 123
Q ss_pred CeeEEEEeCCCCccch----HHHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC
Q 006068 118 ENELNMVDTPGHADFG----GEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~----~ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (662)
++.+.|+||||...+. .+..... ...|.+++|+|+..+... -...+......++ .-+++||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~-~~~~~~~~~~~~~-~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDA-VNQAKAFNEALGI-TGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHH-HHHHHHHHhhCCC-CEEEEECCcCCC
Confidence 6779999999986443 2222222 238999999998654322 2333333344453 567889999854
No 364
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.23 E-value=1.6e-05 Score=83.12 Aligned_cols=134 Identities=24% Similarity=0.259 Sum_probs=96.5
Q ss_pred CCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC---C------ccccccccccccccceeEeeeEE-EEE-e-------
Q 006068 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI---P------HERAMDSISLERERGITIASKVT-GIS-W------- 116 (662)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~------~~~v~D~~~~E~ergiTi~~~~~-~~~-~------- 116 (662)
.+....+-|.++|.-..||||+++.|+.+..... . -..+|.-+.++.-.|.+...... .|. .
T Consensus 53 ~dfd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~af 132 (532)
T KOG1954|consen 53 PDFDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAF 132 (532)
T ss_pred cccccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHH
Confidence 3444567899999999999999999998865311 1 12345555555556665443210 010 0
Q ss_pred ---------c---CeeEEEEeCCCC-----------ccchHHHHHHHhhcceEEEEeeCCC-CchhhHHHHHHHHHHcCC
Q 006068 117 ---------R---ENELNMVDTPGH-----------ADFGGEVERVVGMVEGAILVVDAGE-GPLAQTKFVLAKALKYGL 172 (662)
Q Consensus 117 ---------~---~~~iniIDTPGh-----------~dF~~ev~~~l~~aD~aIlVVDa~~-G~~~qt~~~l~~~~~~~l 172 (662)
. -.+++||||||. -||.+..+-....||.++|++|+.. .+...+.+++..++.+.-
T Consensus 133 lnRf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~Ed 212 (532)
T KOG1954|consen 133 LNRFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHED 212 (532)
T ss_pred HHHHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcc
Confidence 0 137999999994 3688888888899999999999754 577888999999888888
Q ss_pred CcEEEeccCCCCCCCHHH
Q 006068 173 RPILLLNKVDRPAVSEER 190 (662)
Q Consensus 173 p~IvviNKiD~~~~~~~~ 190 (662)
.+=||+||.|. .+.++
T Consensus 213 kiRVVLNKADq--Vdtqq 228 (532)
T KOG1954|consen 213 KIRVVLNKADQ--VDTQQ 228 (532)
T ss_pred eeEEEeccccc--cCHHH
Confidence 88899999998 44544
No 365
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=98.23 E-value=2.1e-05 Score=76.50 Aligned_cols=66 Identities=20% Similarity=0.241 Sum_probs=55.6
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
+.+.+.|+|||+... .....++..+|.+++++.............++.+.+.+.|..+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~~--~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGIG--CPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCCc--HHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 578999999997643 356678899999999999887767778888888888899999999999974
No 366
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.22 E-value=4.4e-06 Score=79.62 Aligned_cols=91 Identities=18% Similarity=0.109 Sum_probs=63.1
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+.+++..+|.+++|+|+.++...+...+.+.+... +.|+|+|+||+|+. +.+.. ......+... . .
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~--~~~~~----~~~~~~~~~~-~-----~ 69 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLV--PTWVT----ARWVKILSKE-Y-----P 69 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcC--CHHHH----HHHHHHHhcC-C-----c
Confidence 46788999999999999987666666666666543 48999999999994 33221 1222222211 1 1
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+-++++||+++. |+++|++.|.+++
T Consensus 70 ~~~~~iSa~~~~--------------~~~~L~~~l~~~~ 94 (157)
T cd01858 70 TIAFHASINNPF--------------GKGSLIQLLRQFS 94 (157)
T ss_pred EEEEEeeccccc--------------cHHHHHHHHHHHH
Confidence 225889999998 9999999987653
No 367
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=98.18 E-value=1.2e-05 Score=90.13 Aligned_cols=159 Identities=23% Similarity=0.275 Sum_probs=95.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCC----------------cccc--ccccccccccce--------------e
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP----------------HERA--MDSISLERERGI--------------T 106 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~----------------~~~v--~D~~~~E~ergi--------------T 106 (662)
..-+|+|.|..++||||++|+||.+.-.... .+.+ +|-. .|+..-. .
T Consensus 108 ~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s-~ek~d~~ti~~~~haL~~~~~~ 186 (749)
T KOG0448|consen 108 RHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGS-EEKIDMKTINQLAHALKPDKDL 186 (749)
T ss_pred cccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCC-cccccHHHHhHHHHhcCccccc
Confidence 3558999999999999999999987531100 0000 0000 0000000 1
Q ss_pred EeeeEEEEEecC-------eeEEEEeCCCC---ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-E
Q 006068 107 IASKVTGISWRE-------NELNMVDTPGH---ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-I 175 (662)
Q Consensus 107 i~~~~~~~~~~~-------~~iniIDTPGh---~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-I 175 (662)
-......+.|++ ..+.++|.||. ..+...+....-.+|.+|||+.|..-.+......+..+.+. .|. +
T Consensus 187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniF 265 (749)
T KOG0448|consen 187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIF 265 (749)
T ss_pred CcceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEE
Confidence 112333445542 37999999995 34667777888899999999999775554445556666555 665 4
Q ss_pred EEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC--cCCCccEEEcccccC
Q 006068 176 LLLNKVDRPAVSEERCDEVESLVFDLFANLGATD--EQLDFPVLYASAKEG 224 (662)
Q Consensus 176 vviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~--~~~~~Pvi~~SA~~g 224 (662)
|+.||.|.....++-.+.+..++.+| .... +..| -++++||+.-
T Consensus 266 IlnnkwDasase~ec~e~V~~Qi~eL----~v~~~~eA~D-rvfFVS~~e~ 311 (749)
T KOG0448|consen 266 ILNNKWDASASEPECKEDVLKQIHEL----SVVTEKEAAD-RVFFVSAKEV 311 (749)
T ss_pred EEechhhhhcccHHHHHHHHHHHHhc----CcccHhhhcC-eeEEEeccch
Confidence 66789998755555445566664432 2110 0111 2899997654
No 368
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.16 E-value=4.6e-06 Score=82.04 Aligned_cols=105 Identities=21% Similarity=0.168 Sum_probs=68.8
Q ss_pred CCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHH-HH-HHh
Q 006068 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVF-DL-FAN 204 (662)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~-~l-~~~ 204 (662)
|.+..|...+..++..+|++++|+|+.+........++. ...+.|+++|+||+|+..... ..... +... .+ ...
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~~~~-~~~~~-~~~~~~~~~~~ 94 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLPKDK-NLVRI-KNWLRAKAAAG 94 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCCCCC-CHHHH-HHHHHHHHHhh
Confidence 444447888888999999999999998755433333322 235789999999999854221 11111 1111 01 111
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.+.. ..+++++||++|+ |+++|++.|.+++|
T Consensus 95 ~~~~----~~~i~~vSA~~~~--------------gi~eL~~~l~~~l~ 125 (190)
T cd01855 95 LGLK----PKDVILISAKKGW--------------GVEELINAIKKLAK 125 (190)
T ss_pred cCCC----cccEEEEECCCCC--------------CHHHHHHHHHHHhh
Confidence 2221 1258999999999 99999999999886
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.15 E-value=2.9e-05 Score=80.90 Aligned_cols=124 Identities=16% Similarity=0.194 Sum_probs=68.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccc-----c------ccccceeEeeeEE-----E--------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSIS-----L------ERERGITIASKVT-----G-------- 113 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~-----~------E~ergiTi~~~~~-----~-------- 113 (662)
.+.+.|+++|++|+||||++-.|..........-.+.|.+. . ....|+.+..... .
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~ 149 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQK 149 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 34578999999999999998888754321111111111111 0 1223433321100 0
Q ss_pred EEecCeeEEEEeCCCCccchH----HHHHHH---h-----hcceEEEEeeCCCCchhhHHHHHHHHH-HcCCCcEEEecc
Q 006068 114 ISWRENELNMVDTPGHADFGG----EVERVV---G-----MVEGAILVVDAGEGPLAQTKFVLAKAL-KYGLRPILLLNK 180 (662)
Q Consensus 114 ~~~~~~~iniIDTPGh~dF~~----ev~~~l---~-----~aD~aIlVVDa~~G~~~qt~~~l~~~~-~~~lp~IvviNK 180 (662)
...+++.+.||||||...... +..... . .+|.++||+|+..|- .+........ ..+ ..-+++||
T Consensus 150 ~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~--~~~~~~~~f~~~~~-~~g~IlTK 226 (272)
T TIGR00064 150 AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQ--NALEQAKVFNEAVG-LTGIILTK 226 (272)
T ss_pred HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCH--HHHHHHHHHHhhCC-CCEEEEEc
Confidence 012468999999999765332 222222 2 378999999997653 2222222222 122 34688999
Q ss_pred CCCC
Q 006068 181 VDRP 184 (662)
Q Consensus 181 iD~~ 184 (662)
+|..
T Consensus 227 lDe~ 230 (272)
T TIGR00064 227 LDGT 230 (272)
T ss_pred cCCC
Confidence 9974
No 370
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.15 E-value=6.4e-06 Score=88.95 Aligned_cols=126 Identities=21% Similarity=0.238 Sum_probs=76.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc----CCCCCcccccccc---cccc------ccceeEeeeEEE-------EEecC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC----GADIPHERAMDSI---SLER------ERGITIASKVTG-------ISWRE 118 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~----g~~~~~~~v~D~~---~~E~------ergiTi~~~~~~-------~~~~~ 118 (662)
+-.+++++|++|+||||++..|.... |.....-...|.. ..|+ ..|+.+...... ..+.+
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 45699999999999999999998653 1111000011111 0011 113333222111 12357
Q ss_pred eeEEEEeCCCCcc---chHHHHHHHhhcce---EEEEeeCCCCchhhHHHHHHHHHHcCCCc-------EEEeccCCCC
Q 006068 119 NELNMVDTPGHAD---FGGEVERVVGMVEG---AILVVDAGEGPLAQTKFVLAKALKYGLRP-------ILLLNKVDRP 184 (662)
Q Consensus 119 ~~iniIDTPGh~d---F~~ev~~~l~~aD~---aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-------IvviNKiD~~ 184 (662)
+.+.||||||... +..+....+..++. .+||++|+.+....+..++.+....++|. =++++|+|-.
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 8999999999774 33344444544443 59999999987776666666666555432 3788999974
No 371
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.13 E-value=6.7e-06 Score=79.59 Aligned_cols=99 Identities=23% Similarity=0.270 Sum_probs=69.4
Q ss_pred CCCCc-cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 126 TPGHA-DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 126 TPGh~-dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
-|||- .-..++...+..+|.+++|+|+.++.......++..+ .+.|+++|+||+|+.. .+. . .+..+.+..
T Consensus 2 ~~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~--~~~---~-~~~~~~~~~ 73 (171)
T cd01856 2 FPGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLAD--PKK---T-KKWLKYFES 73 (171)
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCC--hHH---H-HHHHHHHHh
Confidence 46763 3456778889999999999999877665554444433 3689999999999842 221 1 112222222
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.+ .+++++||+++. |+++|++.+.+.+|
T Consensus 74 ~~-------~~vi~iSa~~~~--------------gi~~L~~~l~~~l~ 101 (171)
T cd01856 74 KG-------EKVLFVNAKSGK--------------GVKKLLKAAKKLLK 101 (171)
T ss_pred cC-------CeEEEEECCCcc--------------cHHHHHHHHHHHHH
Confidence 21 348999999998 99999999998875
No 372
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.11 E-value=1e-05 Score=75.78 Aligned_cols=79 Identities=27% Similarity=0.231 Sum_probs=59.3
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
+++.+++..+|.+++|+|+.++...+...+.+.+... +.|+++|+||+|+.. .+. ..+..+.+...+
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~--~~~----~~~~~~~~~~~~----- 71 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT--EEQ----RKAWAEYFKKEG----- 71 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC--HHH----HHHHHHHHHhcC-----
Confidence 5678899999999999999988877777777777666 899999999999842 222 223333444433
Q ss_pred CCccEEEcccccCc
Q 006068 212 LDFPVLYASAKEGW 225 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~ 225 (662)
.+++++||+++.
T Consensus 72 --~~ii~iSa~~~~ 83 (141)
T cd01857 72 --IVVVFFSALKEN 83 (141)
T ss_pred --CeEEEEEecCCC
Confidence 358999999986
No 373
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.11 E-value=1.3e-05 Score=75.92 Aligned_cols=58 Identities=21% Similarity=0.299 Sum_probs=41.6
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (662)
++.+.||||||.. ......+..+|-+|+|+.... .+..-+.+..-+..--++++||+|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe~----~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPGA----GDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCCc----hhHHHHhhhhHhhhcCEEEEeCCC
Confidence 6899999999964 333458899999999987652 222333334445566799999998
No 374
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.09 E-value=2e-05 Score=86.49 Aligned_cols=124 Identities=17% Similarity=0.105 Sum_probs=68.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc--ccccc---------cccccceeEeeeEEEEE------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS---------LERERGITIASKVTGIS------------ 115 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~---------~E~ergiTi~~~~~~~~------------ 115 (662)
+...|+++|..|+||||++..|............+ .|... .....++.+......-.
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~ 178 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF 178 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence 35689999999999999999987543111101011 11110 11223444332111000
Q ss_pred -ecCeeEEEEeCCCCccc----hHHHHHHHhh--cceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 116 -WRENELNMVDTPGHADF----GGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 116 -~~~~~iniIDTPGh~dF----~~ev~~~l~~--aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
-.++.+.||||||.... ..+....... .|-++||+||..|-.. ....+...+.--+.-+++||+|..
T Consensus 179 ~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 179 KKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred HhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 13689999999996543 3344443333 5679999999876332 122222222222456889999974
No 375
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.07 E-value=6.7e-06 Score=78.34 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=39.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
..+|+++|.+|+|||||+|+|+.... .......|.|....... .+..+.|+||||.
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~-----------~~~~~~~g~T~~~~~~~---~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKV-----------CKVAPIPGETKVWQYIT---LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCc-----------eeeCCCCCeeEeEEEEE---cCCCEEEEECcCC
Confidence 35799999999999999999987632 22334456665543322 2346899999994
No 376
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.04 E-value=1.1e-05 Score=80.77 Aligned_cols=112 Identities=19% Similarity=0.256 Sum_probs=77.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------ch
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------FG 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d-------F~ 133 (662)
-++.++|.+.+|||||+..|.+. +.+....-+.|.........|++-++++.|.||..+ -+
T Consensus 60 a~vg~vgFPSvGksTl~~~l~g~------------~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg 127 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLTGT------------FSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG 127 (358)
T ss_pred eeeeEEecCccchhhhhhhhcCC------------CCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc
Confidence 47999999999999999999865 333333446666666667779999999999999754 24
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCC-----CcEEEeccCCCCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGL-----RPILLLNKVDRPA 185 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~l-----p~IvviNKiD~~~ 185 (662)
.++....+.|..+++|+|+...+. +-+-+-+.+.-+|+ |+=+..-|-|.-+
T Consensus 128 ~qviavartcnli~~vld~~kp~~-hk~~ie~eleg~girlnk~pp~i~~kkKdkgG 183 (358)
T KOG1487|consen 128 KQVIAVARTCNLIFIVLDVLKPLS-HKKIIEKELEGFGIRLNKQPPNIGTKKKDKGG 183 (358)
T ss_pred cEEEEEeecccEEEEEeeccCccc-HHHHHHHhhhcceeeccCCCCCccccccccCc
Confidence 566677888999999999987542 22222233333332 4545555556543
No 377
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.02 E-value=1.4e-05 Score=83.55 Aligned_cols=100 Identities=20% Similarity=0.249 Sum_probs=71.3
Q ss_pred CCCCcc-chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 126 TPGHAD-FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 126 TPGh~d-F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
-|||-. ...++...+..+|.+|+|+||..+.......+.+.+ .+.|+|+|+||+|+.+ .... ....+.+..
T Consensus 4 fpgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~--~~~~----~~~~~~~~~ 75 (276)
T TIGR03596 4 FPGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLAD--PAVT----KQWLKYFEE 75 (276)
T ss_pred ChHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCC--HHHH----HHHHHHHHH
Confidence 378753 456788899999999999999876665555454444 3789999999999842 2211 122222322
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.+ .+++++||+++. |++.|++.|.+.+|.
T Consensus 76 ~~-------~~vi~iSa~~~~--------------gi~~L~~~i~~~~~~ 104 (276)
T TIGR03596 76 KG-------IKALAINAKKGK--------------GVKKIIKAAKKLLKE 104 (276)
T ss_pred cC-------CeEEEEECCCcc--------------cHHHHHHHHHHHHHH
Confidence 22 368999999998 999999999888764
No 378
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.00 E-value=1e-05 Score=78.43 Aligned_cols=56 Identities=21% Similarity=0.431 Sum_probs=42.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
..+|+++|.+|+|||||+|+|++.. ........|+|.......+ +..+.++||||.
T Consensus 117 ~~~~~~vG~pnvGKSslin~l~~~~-----------~~~~~~~pg~T~~~~~~~~---~~~~~l~DtPGi 172 (172)
T cd04178 117 SITVGVVGFPNVGKSSLINSLKRSR-----------ACNVGATPGVTKSMQEVHL---DKKVKLLDSPGI 172 (172)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc-----------cceecCCCCeEcceEEEEe---CCCEEEEECcCC
Confidence 4689999999999999999999762 2233455788876544433 347999999994
No 379
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.00 E-value=1.3e-05 Score=82.20 Aligned_cols=86 Identities=27% Similarity=0.416 Sum_probs=61.7
Q ss_pred HHHhhcceEEEEeeCCCCc--hhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 138 RVVGMVEGAILVVDAGEGP--LAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~--~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
.+++.+|.+++|+|+.+.. ......++..+...++|+++|+||+|+..... +..+..+.+...| ++
T Consensus 32 ~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~~-----~~~~~~~~~~~~g-------~~ 99 (245)
T TIGR00157 32 PIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDED-----MEKEQLDIYRNIG-------YQ 99 (245)
T ss_pred cccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCHH-----HHHHHHHHHHHCC-------Ce
Confidence 4688999999999988643 33445566677778999999999999953211 1112223343333 56
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
++++||++|. |+++|++.+.
T Consensus 100 v~~~SAktg~--------------gi~eLf~~l~ 119 (245)
T TIGR00157 100 VLMTSSKNQD--------------GLKELIEALQ 119 (245)
T ss_pred EEEEecCCch--------------hHHHHHhhhc
Confidence 9999999998 9999998774
No 380
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.96 E-value=2.5e-05 Score=74.29 Aligned_cols=84 Identities=18% Similarity=0.099 Sum_probs=57.5
Q ss_pred ceEEEEeeCCCCchhhHHHHH-HHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccc
Q 006068 144 EGAILVVDAGEGPLAQTKFVL-AKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAK 222 (662)
Q Consensus 144 D~aIlVVDa~~G~~~qt~~~l-~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~ 222 (662)
|.+|+|+|+.++.......+. ..+...+.|+|+|+||+|+.. .+...+.. ..+.... ..+++++||+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~--~~~~~~~~----~~~~~~~------~~~ii~vSa~ 68 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVP--KEVLRKWL----AYLRHSY------PTIPFKISAT 68 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCC--HHHHHHHH----HHHHhhC------CceEEEEecc
Confidence 789999999887655555444 456667899999999999843 22211111 1122211 1358999999
Q ss_pred cCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 223 EGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 223 ~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|. |+++|++.|.+.++
T Consensus 69 ~~~--------------gi~~L~~~i~~~~~ 85 (155)
T cd01849 69 NGQ--------------GIEKKESAFTKQTN 85 (155)
T ss_pred CCc--------------ChhhHHHHHHHHhH
Confidence 998 99999999876653
No 381
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.96 E-value=9.8e-05 Score=82.26 Aligned_cols=61 Identities=25% Similarity=0.407 Sum_probs=46.4
Q ss_pred CCCcEEEeccCCCCC-------CCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHH
Q 006068 171 GLRPILLLNKVDRPA-------VSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (662)
Q Consensus 171 ~lp~IvviNKiD~~~-------~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~ 243 (662)
|+|++||++|.|... +..+.++-+...++.++..+|+. ++|+|.+... +++-
T Consensus 196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAs-------L~yts~~~~~--------------n~~~ 254 (472)
T PF05783_consen 196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGAS-------LIYTSVKEEK--------------NLDL 254 (472)
T ss_pred CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCe-------EEEeeccccc--------------cHHH
Confidence 579999999999632 33344555666777777788875 8999998886 8888
Q ss_pred HHHHHHhhC
Q 006068 244 LLDAIIRHV 252 (662)
Q Consensus 244 Lld~I~~~l 252 (662)
|..+|.+.+
T Consensus 255 L~~yi~h~l 263 (472)
T PF05783_consen 255 LYKYILHRL 263 (472)
T ss_pred HHHHHHHHh
Confidence 888887765
No 382
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=97.95 E-value=0.00013 Score=75.27 Aligned_cols=61 Identities=25% Similarity=0.388 Sum_probs=47.4
Q ss_pred CCCcEEEeccCCCCC-------CCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHH
Q 006068 171 GLRPILLLNKVDRPA-------VSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (662)
Q Consensus 171 ~lp~IvviNKiD~~~-------~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~ 243 (662)
|+|++||++|+|... .+.+.++-+...++.++..+|+. .+|+|++..- |++-
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~Gaa-------LiyTSvKE~K--------------Nidl 280 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAA-------LIYTSVKETK--------------NIDL 280 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCce-------eEEeeccccc--------------chHH
Confidence 689999999999732 22344555667778888888875 8999999887 8998
Q ss_pred HHHHHHhhC
Q 006068 244 LLDAIIRHV 252 (662)
Q Consensus 244 Lld~I~~~l 252 (662)
|...|++.+
T Consensus 281 lyKYivhr~ 289 (473)
T KOG3905|consen 281 LYKYIVHRS 289 (473)
T ss_pred HHHHHHHHh
Confidence 888888764
No 383
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.92 E-value=1.7e-05 Score=75.40 Aligned_cols=57 Identities=25% Similarity=0.466 Sum_probs=42.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
...+++++|++|+|||||+|+|+.... ......+|+|.......+ +..++++||||.
T Consensus 99 ~~~~~~~~G~~~~GKstlin~l~~~~~-----------~~~~~~~~~t~~~~~~~~---~~~~~liDtPG~ 155 (155)
T cd01849 99 KSITVGVIGYPNVGKSSVINALLNKLK-----------LKVGNVPGTTTSQQEVKL---DNKIKLLDTPGI 155 (155)
T ss_pred cCcEEEEEccCCCCHHHHHHHHHcccc-----------ccccCCCCcccceEEEEe---cCCEEEEECCCC
Confidence 357899999999999999999998632 123344577766655443 357999999994
No 384
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=97.91 E-value=1.7e-05 Score=74.29 Aligned_cols=55 Identities=20% Similarity=0.344 Sum_probs=38.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~ 130 (662)
+++++|.+|+|||||+|+|+..... ......|.|..... +..+ ..+.||||||..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~-----------~~~~~~~~~~~~~~--~~~~-~~~~i~DtpG~~ 139 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKV-----------SVSATPGKTKHFQT--IFLT-PTITLCDCPGLV 139 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCce-----------eeCCCCCcccceEE--EEeC-CCEEEEECCCcC
Confidence 8999999999999999999865321 22223455544433 3333 368999999963
No 385
>PRK14974 cell division protein FtsY; Provisional
Probab=97.90 E-value=6.5e-05 Score=80.37 Aligned_cols=121 Identities=19% Similarity=0.224 Sum_probs=65.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc--ccccc---------cccccceeEeeeEE-----E--------E
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS---------LERERGITIASKVT-----G--------I 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~---------~E~ergiTi~~~~~-----~--------~ 114 (662)
+.+.|+++|.+|+||||++..|..........-.+ .|... ....-|+.+..... . .
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai~~~ 218 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAIEHA 218 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHHHHH
Confidence 35789999999999999887776542111000000 11100 01111222211110 0 0
Q ss_pred EecCeeEEEEeCCCCcc----chHHHHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHc--CCC-cEEEeccCCCC
Q 006068 115 SWRENELNMVDTPGHAD----FGGEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKY--GLR-PILLLNKVDRP 184 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~d----F~~ev~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~--~lp-~IvviNKiD~~ 184 (662)
...++.+.||||||... +..+.....+ ..|.++||+||..|- . .+.++..+ .++ --+++||+|..
T Consensus 219 ~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d---~~~~a~~f~~~~~~~giIlTKlD~~ 292 (336)
T PRK14974 219 KARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--D---AVEQAREFNEAVGIDGVILTKVDAD 292 (336)
T ss_pred HhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--h---HHHHHHHHHhcCCCCEEEEeeecCC
Confidence 11356799999999754 3344433333 368899999997652 2 22233322 122 46889999984
No 386
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.89 E-value=8.6e-06 Score=77.64 Aligned_cols=66 Identities=21% Similarity=0.374 Sum_probs=36.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
+.++++|++|+|||||+|+|+....... ..+ +....+-+.+|.......+ .....||||||..+|.
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t--~~i--s~~~~rGkHTTt~~~l~~l---~~g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKT--GEI--SEKTGRGKHTTTHRELFPL---PDGGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS------S----------------SEEEEEE---TTSEEEECSHHHHT--
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhh--hhh--hcccCCCcccCCCeeEEec---CCCcEEEECCCCCccc
Confidence 5899999999999999999998632111 001 1111222333443333333 3357999999988873
No 387
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=97.88 E-value=0.00013 Score=70.39 Aligned_cols=120 Identities=17% Similarity=0.087 Sum_probs=72.6
Q ss_pred EEE-eCCCCCHHHHHHHHHHhcCCCCCcccccccccccccc----ceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 64 AVI-AHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERER----GITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 64 aIi-Gh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~er----giTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+|. +..|+||||+.-.|....-......-+.|.++..... +............-...+.|||||+..+. ....
T Consensus 3 ~v~~~kgG~GKtt~a~~la~~l~~~g~~vllvD~D~~~~~~~~~~~~~~~~~~~~~~~~~~d~viiD~p~~~~~--~~~~ 80 (179)
T cd02036 3 VVTSGKGGVGKTTTTANLGTALAQLGYKVVLIDADLGLRNLDLILGLENRVVYTLHDVLAGDYILIDSPAGIER--GFIT 80 (179)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHhCCCeEEEEeCCCCCCCchhhccccccCCcchhhcccCCEEEEECCCCCcH--HHHH
Confidence 344 4689999999888876542211222233333211000 00000000000000117999999986544 4667
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPA 185 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~ 185 (662)
++..+|.+|+|+++.......+...++.+...+.+. .+++|++|...
T Consensus 81 ~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~ 128 (179)
T cd02036 81 AIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM 128 (179)
T ss_pred HHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence 889999999999988777777777778877777664 58999998743
No 388
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.87 E-value=2.5e-05 Score=82.18 Aligned_cols=101 Identities=23% Similarity=0.271 Sum_probs=71.4
Q ss_pred CCCCcc-chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 126 TPGHAD-FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 126 TPGh~d-F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
-|||-. -..++...+..+|.+|+|+|+..+.......+.+... +.|+++|+||+|+. +... .+...+.+..
T Consensus 7 fpgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~--~~~~----~~~~~~~~~~ 78 (287)
T PRK09563 7 FPGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLA--DPEV----TKKWIEYFEE 78 (287)
T ss_pred cHHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcC--CHHH----HHHHHHHHHH
Confidence 488753 3467788999999999999998876655554444332 78999999999984 2221 1222333332
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
.+ .+++++||+++. |++.|++.|.+.+|..
T Consensus 79 ~~-------~~vi~vSa~~~~--------------gi~~L~~~l~~~l~~~ 108 (287)
T PRK09563 79 QG-------IKALAINAKKGQ--------------GVKKILKAAKKLLKEK 108 (287)
T ss_pred cC-------CeEEEEECCCcc--------------cHHHHHHHHHHHHHHH
Confidence 22 468999999998 9999999988877643
No 389
>cd03692 mtIF2_IVc mtIF2_IVc: this family represents the C2 subdomain of domain IV of mitochondrial translation initiation factor 2 (mtIF2) which adopts a beta-barrel fold displaying a high degree of structural similarity with domain II of the translation elongation factor EF-Tu. The C-terminal part of mtIF2 contains the entire fMet-tRNAfmet binding site of IF-2 and is resistant to proteolysis. This C-terminal portion consists of two domains, IF2 C1 and IF2 C2. IF2 C2 been shown to contain all molecular determinants necessary and sufficient for the recognition and binding of fMet-tRNAfMet. Like IF2 from certain prokaryotes such as Thermus thermophilus, mtIF2lacks domain II which is thought to be involved in binding of E.coli IF-2 to 30S subunits.
Probab=97.83 E-value=0.0002 Score=60.90 Aligned_cols=78 Identities=23% Similarity=0.240 Sum_probs=61.5
Q ss_pred eEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC
Q 006068 265 MLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT 342 (662)
Q Consensus 265 ~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~ 342 (662)
+.|.+++.....|.++.+||.+|++++|+.+.+.+.+. .....+|.+|..+. .++++|.+|+-|.| .+++
T Consensus 3 ~~V~~vf~~~~~g~vag~kV~~G~l~~g~~v~vlr~~~----~~~~g~i~sl~~~~----~~v~~a~~G~ecgi~l~~~~ 74 (84)
T cd03692 3 AEVRAVFKISKVGNIAGCYVTDGKIKRNAKVRVLRNGE----VIYEGKISSLKRFK----DDVKEVKKGYECGITLENFN 74 (84)
T ss_pred EEEEEEEECCCCcEEEEEEEEECEEeCCCEEEEEcCCC----EEEEEEEEEEEEcC----cccCEECCCCEEEEEEeCcc
Confidence 34555555556688999999999999999999997531 12456888888763 58999999999876 5778
Q ss_pred CCccCcee
Q 006068 343 KPSIGHTV 350 (662)
Q Consensus 343 ~~~~GdTl 350 (662)
+++.||+|
T Consensus 75 d~~~Gdvi 82 (84)
T cd03692 75 DIKVGDII 82 (84)
T ss_pred cCCCCCEE
Confidence 89999987
No 390
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.83 E-value=2.4e-05 Score=76.95 Aligned_cols=63 Identities=25% Similarity=0.346 Sum_probs=42.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
.+++++|.+|+|||||+|+|+......... -........+|+|.......+. ..+.||||||.
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~---~~~~~~~~~~gtT~~~~~~~~~---~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKL---KDLLTTSPIPGTTLDLIKIPLG---NGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhccccccc---ccccccCCCCCeeeeeEEEecC---CCCEEEeCcCC
Confidence 589999999999999999999863211000 0011233446888876655553 26899999994
No 391
>PRK12289 GTPase RsgA; Reviewed
Probab=97.82 E-value=6.3e-05 Score=81.07 Aligned_cols=84 Identities=27% Similarity=0.326 Sum_probs=60.5
Q ss_pred HHhhcceEEEEeeCCCCc-hh-hHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 139 VVGMVEGAILVVDAGEGP-LA-QTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~-~~-qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
++..+|.+++|+|+.+.. .. +...++..+...++|+|+|+||+|+.. .... +...+.+..+| +++
T Consensus 86 ~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~--~~~~----~~~~~~~~~~g-------~~v 152 (352)
T PRK12289 86 PVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVS--PTEQ----QQWQDRLQQWG-------YQP 152 (352)
T ss_pred hhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCC--hHHH----HHHHHHHHhcC-------CeE
Confidence 478899999999987643 22 335566667778999999999999953 2221 22233344444 458
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
+++||++|. |+++|++.+.
T Consensus 153 ~~iSA~tg~--------------GI~eL~~~L~ 171 (352)
T PRK12289 153 LFISVETGI--------------GLEALLEQLR 171 (352)
T ss_pred EEEEcCCCC--------------CHHHHhhhhc
Confidence 999999998 9999998874
No 392
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.82 E-value=6.5e-05 Score=71.86 Aligned_cols=119 Identities=20% Similarity=0.189 Sum_probs=63.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCC-------CCccccccccccccc--cceeEeeeEEEEE-----------------
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGAD-------IPHERAMDSISLERE--RGITIASKVTGIS----------------- 115 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~-------~~~~~v~D~~~~E~e--rgiTi~~~~~~~~----------------- 115 (662)
-+.++|..|+|||||+++++...... .....-.|....... +-+.+......+.
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~~ 81 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD 81 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHHH
Confidence 46899999999999999999764210 001111121111110 1111111111110
Q ss_pred --ecCeeEEEEeCCCCccchHHHH--------HHHhhcceEEEEeeCCCCchhh--HHHHHHHHHHcCCCcEEEeccCCC
Q 006068 116 --WRENELNMVDTPGHADFGGEVE--------RVVGMVEGAILVVDAGEGPLAQ--TKFVLAKALKYGLRPILLLNKVDR 183 (662)
Q Consensus 116 --~~~~~iniIDTPGh~dF~~ev~--------~~l~~aD~aIlVVDa~~G~~~q--t~~~l~~~~~~~lp~IvviNKiD~ 183 (662)
.....+.+|||||..+-..... .....+|.++.|||+....... ...+. .+..-.-+|++||+|+
T Consensus 82 ~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~---~Qi~~ad~ivlnk~dl 158 (158)
T cd03112 82 AGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQ---SQIAFADRILLNKTDL 158 (158)
T ss_pred hccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHH---HHHHHCCEEEEecccC
Confidence 1245789999999876332222 2334478999999986543211 11111 2223345889999995
No 393
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00012 Score=81.93 Aligned_cols=124 Identities=19% Similarity=0.215 Sum_probs=65.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCC--CCccccc--ccccc---------ccccceeEeeeEEEE-------EecC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD--IPHERAM--DSISL---------ERERGITIASKVTGI-------SWRE 118 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~--~~~~~v~--D~~~~---------E~ergiTi~~~~~~~-------~~~~ 118 (662)
.-.+|+|+|..|+||||++..|....-.. ...-.+. |.... ...-|+.+......- .+.+
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l~~ 428 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERLRD 428 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHhcc
Confidence 35799999999999999999987642110 0011111 21110 011222222111000 1246
Q ss_pred eeEEEEeCCCCccchHHHHH---HHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 119 NELNMVDTPGHADFGGEVER---VVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~---~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
+.+.||||||...+...... .+. .....+||+++..+..... .+++..... .+.-+++||+|..
T Consensus 429 ~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~-eii~~f~~~-~~~gvILTKlDEt 497 (559)
T PRK12727 429 YKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLD-EVVRRFAHA-KPQGVVLTKLDET 497 (559)
T ss_pred CCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHH-HHHHHHHhh-CCeEEEEecCcCc
Confidence 88999999997544322111 111 1245788899876533322 233333332 3456899999973
No 394
>cd03688 eIF2_gamma_II eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea. eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding.
Probab=97.77 E-value=0.00019 Score=63.35 Aligned_cols=80 Identities=21% Similarity=0.248 Sum_probs=59.1
Q ss_pred CCCCceeEEEeeeeec--------ccceEEEEEEeeceeccCCEEEEeecc---CC-CCc-ceEEeEEEeEEeecCCcee
Q 006068 259 LDAPFQMLVTMMEKDF--------YLGRILTGRVSSGVVSVGDKVHGLRIT---DS-GTE-KIEEGKVTKLMKKKGTGMV 325 (662)
Q Consensus 259 ~~~p~~~~V~~~~~~~--------~~G~i~~gRV~sG~l~~Gd~V~~~~~~---~~-~~~-~~~~~kI~~i~~~~g~~~~ 325 (662)
.+.|+.|+|..++... ..|.++-|+|.+|.|+.||.|.+.+.- .. +.. .....+|.+|+.++ .
T Consensus 2 ~~~pp~M~V~RsFdinkPG~~~~~l~GgVigGsi~~G~lkvgdeIEIrpg~~~~~~~~~~~~pi~T~I~sl~~~~----~ 77 (113)
T cd03688 2 FTSPPRMIVIRSFDVNKPGTEVDDLKGGVAGGSLLQGVLKVGDEIEIRPGIVVKDEGKIKCRPIFTKIVSLKAEN----N 77 (113)
T ss_pred CCCCceEEEEEEEecCCCCCccccceeeEEEEEEEEEEEeCCCEEEEeeceeeecCCCeeEEEEEEEEEEEEecC----c
Confidence 4788999998776554 789999999999999999999887431 00 000 11345788887654 5
Q ss_pred eecccCCCCEEEE-cCcC
Q 006068 326 LIDSAGAGDIISV-AGMT 342 (662)
Q Consensus 326 ~v~~a~AGdIvai-~gl~ 342 (662)
.+++|.||+.++| ++|+
T Consensus 78 ~l~~a~pGgliGvgT~Ld 95 (113)
T cd03688 78 DLQEAVPGGLIGVGTKLD 95 (113)
T ss_pred cccEEeCCCeEEEccccC
Confidence 8999999999999 4554
No 395
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.76 E-value=5.5e-05 Score=73.18 Aligned_cols=56 Identities=27% Similarity=0.335 Sum_probs=40.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
..+++++|.+++|||||+++|+.... .......|.|.......+. ..+.+|||||.
T Consensus 115 ~~~~~~~G~~~vGKstlin~l~~~~~-----------~~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 115 GIRAMVVGIPNVGKSTLINRLRGKKV-----------AKVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc-----------eeecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 46899999999999999999997632 1122334666665554442 57899999996
No 396
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.76 E-value=2.9e-05 Score=84.28 Aligned_cols=115 Identities=15% Similarity=0.162 Sum_probs=68.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
++++++|.+|+|||||+|+|+....... +.......+|.|....... . +..+.++||||..... .+...+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~------~~~~~s~~pgtT~~~~~~~--~-~~~~~l~DtPG~~~~~-~~~~~l 224 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDK------DVITTSPFPGTTLDLIEIP--L-DDGHSLYDTPGIINSH-QMAHYL 224 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCc------ceeeecCCCCeEeeEEEEE--e-CCCCEEEECCCCCChh-Hhhhhc
Confidence 5899999999999999999998643211 1112344568887654333 2 2357899999976532 111111
Q ss_pred -----------hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC
Q 006068 141 -----------GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (662)
Q Consensus 141 -----------~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (662)
.......+.+|....++......+......+..+.++++|-+...
T Consensus 225 ~~~~l~~~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h 280 (360)
T TIGR03597 225 DKKDLKYITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH 280 (360)
T ss_pred CHHHHhhcCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence 123456777776654443333333333333455677788877644
No 397
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=97.74 E-value=0.00023 Score=63.24 Aligned_cols=99 Identities=18% Similarity=0.091 Sum_probs=68.4
Q ss_pred EEEEe-CCCCCHHHHHHHHHHhcCCC-CCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 63 VAVIA-HVDHGKTTLMDRLLRQCGAD-IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 63 IaIiG-h~~~GKTTLv~~Ll~~~g~~-~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
|+++| ..|+||||+.-.|....-.. .....+.|.++... ..+.|+|||+..+. ....++
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d~d~~~~-----------------~D~IIiDtpp~~~~--~~~~~l 62 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFG-----------------DDYVVVDLGRSLDE--VSLAAL 62 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEECCCCCC-----------------CCEEEEeCCCCcCH--HHHHHH
Confidence 44544 47899999888776553222 22233344443321 17999999997643 456788
Q ss_pred hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC----cEEEecc
Q 006068 141 GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR----PILLLNK 180 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp----~IvviNK 180 (662)
..+|.+|++++........+...++.+.+.+.+ +.+|+|+
T Consensus 63 ~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 63 DQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred HHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 999999999998877777788888888777654 4588886
No 398
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.72 E-value=9.4e-05 Score=79.62 Aligned_cols=83 Identities=18% Similarity=0.151 Sum_probs=57.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-----------------CeeEEE
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-----------------ENELNM 123 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-----------------~~~ini 123 (662)
.+++|+|.+++|||||+++|+....... ......|+......+.+. ...+.+
T Consensus 3 lk~GivGlPn~GKSTlfnaLT~~~~~~~-----------a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~ 71 (368)
T TIGR00092 3 LSGGIVGLPNVGKSTLFAATTNLLGNEA-----------ANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEF 71 (368)
T ss_pred ceEEEECCCCCChHHHHHHHhCCCcccc-----------CCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEE
Confidence 4799999999999999999988753111 111122222222222222 246899
Q ss_pred EeCCCCcc-------chHHHHHHHhhcceEEEEeeCCC
Q 006068 124 VDTPGHAD-------FGGEVERVVGMVEGAILVVDAGE 154 (662)
Q Consensus 124 IDTPGh~d-------F~~ev~~~l~~aD~aIlVVDa~~ 154 (662)
+|.||... ++......++.+|+++.|||+.+
T Consensus 72 ~DiaGlv~gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~ 109 (368)
T TIGR00092 72 VDIAGLVGGASKGEGLGNQFLANIREVDIIQHVVRCFE 109 (368)
T ss_pred EeccccccchhcccCcchHHHHHHHhCCEEEEEEeCCC
Confidence 99999653 56688889999999999999864
No 399
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.72 E-value=0.00024 Score=70.47 Aligned_cols=123 Identities=21% Similarity=0.265 Sum_probs=66.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCcc--cccccccc---------ccccceeEeeeEE-------------EEEe
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHE--RAMDSISL---------ERERGITIASKVT-------------GISW 116 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~--~v~D~~~~---------E~ergiTi~~~~~-------------~~~~ 116 (662)
+.|+++|+.|+||||.+-.|..........- -.+|.... .+.-|+.+..... .+..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~~ 81 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFRK 81 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHhh
Confidence 4689999999999999988876543111000 00111110 1111222211100 0111
Q ss_pred cCeeEEEEeCCCCccchH----HHHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC
Q 006068 117 RENELNMVDTPGHADFGG----EVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~----ev~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (662)
+++.+.||||||...+.. +....+. ..+-++||+||..+.... ..+.......++. =++++|+|...
T Consensus 82 ~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~-~~~~~~~~~~~~~-~lIlTKlDet~ 154 (196)
T PF00448_consen 82 KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDL-EQALAFYEAFGID-GLILTKLDETA 154 (196)
T ss_dssp TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHH-HHHHHHHHHSSTC-EEEEESTTSSS
T ss_pred cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHH-HHHHHHhhcccCc-eEEEEeecCCC
Confidence 357899999999765433 3333333 356799999998764322 2444444444555 45599999743
No 400
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.71 E-value=0.00047 Score=64.41 Aligned_cols=102 Identities=14% Similarity=0.084 Sum_probs=66.9
Q ss_pred EeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcce
Q 006068 66 IAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEG 145 (662)
Q Consensus 66 iGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~ 145 (662)
-+..|+||||+.-.|............+.|.+... -.+ .+.+.++|||+.. ......++..+|.
T Consensus 6 ~~kgg~gkt~~~~~~a~~~~~~~~~~~~vd~D~~~----~~~----------~yd~VIiD~p~~~--~~~~~~~l~~aD~ 69 (139)
T cd02038 6 SGKGGVGKTNISANLALALAKLGKRVLLLDADLGL----ANL----------DYDYIIIDTGAGI--SDNVLDFFLAADE 69 (139)
T ss_pred cCCCCCcHHHHHHHHHHHHHHCCCcEEEEECCCCC----CCC----------CCCEEEEECCCCC--CHHHHHHHHhCCe
Confidence 45688999999888776532222122233433210 001 1789999999864 3445678999999
Q ss_pred EEEEeeCCCCchhhHHHHHHHHHHc--CCCcEEEeccCCC
Q 006068 146 AILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDR 183 (662)
Q Consensus 146 aIlVVDa~~G~~~qt~~~l~~~~~~--~lp~IvviNKiD~ 183 (662)
+++|+++.......+...++.+.+. ..+..+++|+++.
T Consensus 70 vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 70 VIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred EEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 9999998765555666666665443 3456799999985
No 401
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.67 E-value=0.00011 Score=76.75 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=40.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
..+++++|.+|+|||||+|+|+.... .......|+|.......+ +..+.|+||||.
T Consensus 118 ~~~~~~vG~~nvGKSslin~l~~~~~-----------~~~~~~~g~T~~~~~~~~---~~~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVGKSTLINRLAGKKV-----------AKVGNRPGVTKGQQWIKL---SDGLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCc-----------cccCCCCCeecceEEEEe---CCCEEEEECCCc
Confidence 46899999999999999999986521 122234577766543332 246899999997
No 402
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.66 E-value=0.00021 Score=79.13 Aligned_cols=121 Identities=18% Similarity=0.296 Sum_probs=67.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc--ccccc---------cccccceeEeeeEEE----------E-Ee
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS---------LERERGITIASKVTG----------I-SW 116 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~---------~E~ergiTi~~~~~~----------~-~~ 116 (662)
....|.++|++|+||||++..|............+ .|... ....-|+.+...... + ..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~~ 173 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEKF 173 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHh
Confidence 45789999999999999998887543211111001 01100 011123332211100 0 01
Q ss_pred cCeeEEEEeCCCCccchHH----HH--HHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc--CCCc-EEEeccCCCC
Q 006068 117 RENELNMVDTPGHADFGGE----VE--RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRP-ILLLNKVDRP 184 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~e----v~--~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~--~lp~-IvviNKiD~~ 184 (662)
.++.+.||||||...+... .. ..+..+|.++||+|+..|. + .+..+..+ .+++ -+++||+|..
T Consensus 174 ~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq--~---av~~a~~F~~~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 174 KKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ--Q---AKNQAKAFHEAVGIGGIIITKLDGT 245 (437)
T ss_pred hcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH--H---HHHHHHHHHhcCCCCEEEEecccCC
Confidence 2458999999997655332 22 2344678999999998762 2 23334433 3454 4788999963
No 403
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.66 E-value=0.00013 Score=79.21 Aligned_cols=102 Identities=21% Similarity=0.151 Sum_probs=69.0
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
..+|...+..+...+|.+++|+|+.+-......++.+.+ .+.|+++|+||+|+..... ...++.+.+.+.+...|+.
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k~~-~~~~~~~~l~~~~k~~g~~ 126 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPKSV-NLSKIKEWMKKRAKELGLK 126 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCCCC-CHHHHHHHHHHHHHHcCCC
Confidence 446877777778899999999998765433333333322 2779999999999854221 1133344444455555543
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
. ..++.+||++|+ |+++|++.|.++
T Consensus 127 ~----~~i~~vSAk~g~--------------gv~eL~~~l~~~ 151 (360)
T TIGR03597 127 P----VDIILVSAKKGN--------------GIDELLDKIKKA 151 (360)
T ss_pred c----CcEEEecCCCCC--------------CHHHHHHHHHHH
Confidence 1 138899999999 999999998765
No 404
>cd03702 IF2_mtIF2_II This family represents the domain II of bacterial Initiation Factor 2 (IF2) and its eukaryotic mitochondrial homologue mtIF2. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial mtIF-2.
Probab=97.65 E-value=0.00026 Score=61.59 Aligned_cols=76 Identities=22% Similarity=0.298 Sum_probs=64.5
Q ss_pred eeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCC
Q 006068 264 QMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343 (662)
Q Consensus 264 ~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~ 343 (662)
.+.|.....+...|.++..-|.+|+|++||.+.... ...||+.|+...| .++++|.||+.|-|.|+++
T Consensus 2 ~g~VlE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~---------~~gkVr~l~d~~g---~~v~~a~Ps~~V~I~G~~~ 69 (95)
T cd03702 2 EGVVIESKLDKGRGPVATVLVQNGTLKVGDVLVAGT---------TYGKVRAMFDENG---KRVKEAGPSTPVEILGLKG 69 (95)
T ss_pred eEEEEEEEecCCCCccEEEEEEcCeEeCCCEEEEcc---------cccEEEEEECCCC---CCCCEECCCCcEEEcCCCC
Confidence 457788888899999999999999999999998763 3459999998877 5799999999999999987
Q ss_pred C-ccCceee
Q 006068 344 P-SIGHTVA 351 (662)
Q Consensus 344 ~-~~GdTl~ 351 (662)
+ ..||.+.
T Consensus 70 ~P~aGd~~~ 78 (95)
T cd03702 70 VPQAGDKFL 78 (95)
T ss_pred CCCCCCEEE
Confidence 6 5677664
No 405
>PRK12288 GTPase RsgA; Reviewed
Probab=97.64 E-value=6.6e-05 Score=80.85 Aligned_cols=65 Identities=20% Similarity=0.310 Sum_probs=41.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
.++|+|.+|+|||||+|+|+........ .+ +....+-+.+|.......+..+ ..||||||...|.
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~--~i--s~~~~rGrHTT~~~~l~~l~~~---~~liDTPGir~~~ 271 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVG--DV--SDNSGLGQHTTTAARLYHFPHG---GDLIDSPGVREFG 271 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeec--cc--cCcCCCCcCceeeEEEEEecCC---CEEEECCCCCccc
Confidence 5899999999999999999976321110 01 1112233445555554444322 3599999998873
No 406
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.61 E-value=0.00011 Score=77.21 Aligned_cols=58 Identities=26% Similarity=0.294 Sum_probs=41.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD 131 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d 131 (662)
..+++++|.+|+|||||+|+|+.... .......|+|....... . +..+.|+||||...
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~-----------~~~~~~~g~T~~~~~~~--~-~~~~~l~DtPGi~~ 178 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKI-----------AKTGNRPGVTKAQQWIK--L-GKGLELLDTPGILW 178 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc-----------cccCCCCCeEEEEEEEE--e-CCcEEEEECCCcCC
Confidence 46899999999999999999997521 12233457777654322 2 35799999999643
No 407
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.61 E-value=0.00047 Score=73.38 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=80.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCC-------Cccccccc-c--ccccccceeEeeeEEEEE---------------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADI-------PHERAMDS-I--SLERERGITIASKVTGIS--------------- 115 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------~~~~v~D~-~--~~E~ergiTi~~~~~~~~--------------- 115 (662)
+...|-|--|+|||||++.|+.+..... ..+--.|. . ....+.=..+......+.
T Consensus 2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~ 81 (323)
T COG0523 2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR 81 (323)
T ss_pred CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence 4678999999999999999998876211 11111121 1 111111222233333333
Q ss_pred ecCeeEEEEeCCCCccchHHHHH--------HHhhcceEEEEeeCCCCchhhH---HHHHHHHHHcCCCcEEEeccCCCC
Q 006068 116 WRENELNMVDTPGHADFGGEVER--------VVGMVEGAILVVDAGEGPLAQT---KFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 116 ~~~~~iniIDTPGh~dF~~ev~~--------~l~~aD~aIlVVDa~~G~~~qt---~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
-+.....+|-|-|.++=...+.. ..-..|++|-||||........ .....+ ....=+|++||.|+.
T Consensus 82 ~~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Q---ia~AD~ivlNK~Dlv 158 (323)
T COG0523 82 RDRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQ---LAFADVIVLNKTDLV 158 (323)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHH---HHhCcEEEEecccCC
Confidence 12467899999998874332222 2234588999999987544332 112222 223458999999995
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEccc
Q 006068 185 AVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASA 221 (662)
Q Consensus 185 ~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA 221 (662)
+ .+.... +...+.+++.. .+++.+|.
T Consensus 159 ~--~~~l~~----l~~~l~~lnp~-----A~i~~~~~ 184 (323)
T COG0523 159 D--AEELEA----LEARLRKLNPR-----ARIIETSY 184 (323)
T ss_pred C--HHHHHH----HHHHHHHhCCC-----CeEEEccc
Confidence 4 333232 33333333332 35777766
No 408
>PRK00098 GTPase RsgA; Reviewed
Probab=97.61 E-value=0.00016 Score=76.45 Aligned_cols=84 Identities=31% Similarity=0.437 Sum_probs=59.0
Q ss_pred HHhhcceEEEEeeCCCCch--hhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 139 VVGMVEGAILVVDAGEGPL--AQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~--~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+..+|.+++|+|+.+... .....++..+...++|+++|+||+|+.. +... ..+..+.+..++ +|+
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~-~~~~----~~~~~~~~~~~g-------~~v 144 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLD-DLEE----ARELLALYRAIG-------YDV 144 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCC-CHHH----HHHHHHHHHHCC-------CeE
Confidence 4688999999999976432 2224556667788999999999999952 2211 222333333333 479
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHH
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I 248 (662)
+++||+++. |+++|++.+
T Consensus 145 ~~vSA~~g~--------------gi~~L~~~l 162 (298)
T PRK00098 145 LELSAKEGE--------------GLDELKPLL 162 (298)
T ss_pred EEEeCCCCc--------------cHHHHHhhc
Confidence 999999998 999988876
No 409
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=97.59 E-value=0.00031 Score=74.93 Aligned_cols=81 Identities=21% Similarity=0.152 Sum_probs=63.6
Q ss_pred cceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-----------chhhHHHHHHHHHH--
Q 006068 103 RGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALK-- 169 (662)
Q Consensus 103 rgiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-----------~~~qt~~~l~~~~~-- 169 (662)
|..|.......+.+++..+.+||++|+..+...+..++..++++|+|||..+- -+..+...+..+..
T Consensus 145 r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~ 224 (317)
T cd00066 145 RVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSR 224 (317)
T ss_pred ecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCc
Confidence 34455566667888999999999999999999999999999999999998752 23344445554443
Q ss_pred --cCCCcEEEeccCCC
Q 006068 170 --YGLRPILLLNKVDR 183 (662)
Q Consensus 170 --~~lp~IvviNKiD~ 183 (662)
.+.|+++++||.|+
T Consensus 225 ~~~~~pill~~NK~D~ 240 (317)
T cd00066 225 WFANTSIILFLNKKDL 240 (317)
T ss_pred cccCCCEEEEccChHH
Confidence 37899999999996
No 410
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.58 E-value=0.00014 Score=73.68 Aligned_cols=87 Identities=18% Similarity=0.138 Sum_probs=55.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc--CCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch---
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC--GADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG--- 133 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~--g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~--- 133 (662)
++..|+|+|..++|||||+|+|+... .... +. .....+||-+....... ..+..+.++||||..+..
T Consensus 6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~------~~-~~~~T~gi~~~~~~~~~-~~~~~v~~lDteG~~~~~~~~ 77 (224)
T cd01851 6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVM------DT-SQQTTKGIWMWSVPFKL-GKEHAVLLLDTEGTDGRERGE 77 (224)
T ss_pred CEEEEEEECCCCCCHHHHHHHHhCCCCCeEec------CC-CCCCccceEEEeccccC-CCcceEEEEecCCcCccccCc
Confidence 46789999999999999999999872 1100 00 12223455443322211 246789999999976532
Q ss_pred ---HHHHHHHhh--cceEEEEeeCC
Q 006068 134 ---GEVERVVGM--VEGAILVVDAG 153 (662)
Q Consensus 134 ---~ev~~~l~~--aD~aIlVVDa~ 153 (662)
.....++.. +|.+|+.++..
T Consensus 78 ~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 78 FEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred hhhhhHHHHHHHHHhCEEEEeccCc
Confidence 223344555 88888888864
No 411
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.57 E-value=0.00031 Score=75.92 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=65.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc--ccccc---ccc------ccceeEeeeEEE---------EE-ecC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS---LER------ERGITIASKVTG---------IS-WRE 118 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~---~E~------ergiTi~~~~~~---------~~-~~~ 118 (662)
.+.|+|+|+.|+||||++..|............+ .|... .++ .-|+.+...... +. ..+
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~ 320 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 320 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence 5789999999999999999997543211100001 11110 000 112222211000 00 114
Q ss_pred eeEEEEeCCCCccc----hHHHHHHHhh--cceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCC
Q 006068 119 NELNMVDTPGHADF----GGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPA 185 (662)
Q Consensus 119 ~~iniIDTPGh~dF----~~ev~~~l~~--aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~ 185 (662)
+.+.||||||.... ..+..+.+.. .|.++||+||+.+.. ....+++.... +++ =++++|+|-..
T Consensus 321 ~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~-d~~~i~~~F~~--~~idglI~TKLDET~ 391 (436)
T PRK11889 321 VDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKD--IHIDGIVFTKFDETA 391 (436)
T ss_pred CCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChH-HHHHHHHHhcC--CCCCEEEEEcccCCC
Confidence 68999999997543 3344444433 467899999865322 11223333222 332 47899999743
No 412
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=97.57 E-value=0.00045 Score=60.73 Aligned_cols=82 Identities=17% Similarity=0.091 Sum_probs=54.5
Q ss_pred EEEEe-CCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 63 VAVIA-HVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 63 IaIiG-h~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
|++.| ..|+||||+.-.|............+.|.++. +.+.|+|+|+..+ .....++.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~~~~~~~vl~~d~d~~-------------------~d~viiD~p~~~~--~~~~~~l~ 60 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAALARRGKRVLLIDLDPQ-------------------YDYIIIDTPPSLG--LLTRNALA 60 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHhCCCcEEEEeCCCC-------------------CCEEEEeCcCCCC--HHHHHHHH
Confidence 56677 57999999988887653211112222332222 6799999999754 34458899
Q ss_pred hcceEEEEeeCCCCchhhHHHHHH
Q 006068 142 MVEGAILVVDAGEGPLAQTKFVLA 165 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~~~l~ 165 (662)
.+|.+++++++..........+++
T Consensus 61 ~ad~viv~~~~~~~s~~~~~~~~~ 84 (104)
T cd02042 61 AADLVLIPVQPSPLDLDGLEKLLE 84 (104)
T ss_pred HCCEEEEeccCCHHHHHHHHHHHH
Confidence 999999999987654545555544
No 413
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=97.54 E-value=0.00014 Score=68.96 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=37.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
...+++++|.+++|||||+++|+.... .......|.|.... +...+..+.||||||.
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~-----------~~~~~~~~~t~~~~---~~~~~~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHS-----------ASTSPSPGYTKGEQ---LVKITSKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCc-----------cccCCCCCeeeeeE---EEEcCCCEEEEECcCC
Confidence 356889999999999999999985421 11122335554332 2222457999999994
No 414
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.53 E-value=0.00014 Score=74.80 Aligned_cols=64 Identities=20% Similarity=0.250 Sum_probs=41.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF 132 (662)
..++++|++|+|||||+|+|+........ .+ +....+-+.+|.......+ . ...|+||||...|
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~--~i--~~~~~~G~hTT~~~~l~~l--~--~~~liDtPG~~~~ 184 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVN--DI--SSKLGLGKHTTTHVELFHF--H--GGLIADTPGFNEF 184 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhcccc--ce--eccCCCCCCcCCceEEEEc--C--CcEEEeCCCcccc
Confidence 47899999999999999999976321100 01 1112233456666555554 2 2489999998776
No 415
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.52 E-value=0.00042 Score=76.75 Aligned_cols=123 Identities=18% Similarity=0.201 Sum_probs=66.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC--CCCCcccccccccc-----------ccccceeEeeeEEEE-------EecCe
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG--ADIPHERAMDSISL-----------ERERGITIASKVTGI-------SWREN 119 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g--~~~~~~~v~D~~~~-----------E~ergiTi~~~~~~~-------~~~~~ 119 (662)
.+.++++|+.|+||||++-.|....- .....-.+.+.++. .+..++.+......- ...++
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~~ 300 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRDC 300 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCCC
Confidence 46899999999999999888865421 11111111111110 011122221111100 12367
Q ss_pred eEEEEeCCCCccch----HHHHHHHhh---cceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 120 ELNMVDTPGHADFG----GEVERVVGM---VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 120 ~iniIDTPGh~dF~----~ev~~~l~~---aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
.+.||||||+..+. .+....+.. .+-+.||+++..+. .....++......++ -=++++|+|..
T Consensus 301 DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~~~~~-~~vI~TKlDet 370 (424)
T PRK05703 301 DVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFSRLPL-DGLIFTKLDET 370 (424)
T ss_pred CEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhCCCCC-CEEEEeccccc
Confidence 89999999986553 334444442 23568899987543 222333343333332 25889999973
No 416
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.51 E-value=0.0011 Score=72.68 Aligned_cols=140 Identities=20% Similarity=0.285 Sum_probs=91.5
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcC----CC--------------CCc--ccccccc-------------------
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCG----AD--------------IPH--ERAMDSI------------------- 97 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g----~~--------------~~~--~~v~D~~------------------- 97 (662)
.++.++|+++|...+||||.++.+....- .. .+. ..+-|+.
T Consensus 305 ~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E 384 (980)
T KOG0447|consen 305 QDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIE 384 (980)
T ss_pred cccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHH
Confidence 35688999999999999999998876532 00 000 0111111
Q ss_pred ---ccccccceeEeeeEEEEEecC---eeEEEEeCCCCcc-------------chHHHHHHHhhcceEEEEeeCC--CCc
Q 006068 98 ---SLERERGITIASKVTGISWRE---NELNMVDTPGHAD-------------FGGEVERVVGMVEGAILVVDAG--EGP 156 (662)
Q Consensus 98 ---~~E~ergiTi~~~~~~~~~~~---~~iniIDTPGh~d-------------F~~ev~~~l~~aD~aIlVVDa~--~G~ 156 (662)
...-..|-|+.....++..+| .+..++|.||... .......++...+++||||--. +..
T Consensus 385 ~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAE 464 (980)
T KOG0447|consen 385 LRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAE 464 (980)
T ss_pred HHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchh
Confidence 112245788888888887775 4789999999532 2344556778889999987522 212
Q ss_pred hhhHHHHHHHHHHcCCCcEEEeccCCCCC---CCHHHHHHHHH
Q 006068 157 LAQTKFVLAKALKYGLRPILLLNKVDRPA---VSEERCDEVES 196 (662)
Q Consensus 157 ~~qt~~~l~~~~~~~lp~IvviNKiD~~~---~~~~~~~ei~~ 196 (662)
-.....+..++.-.|...|+|++|+|+.. +++.++..+++
T Consensus 465 RSnVTDLVsq~DP~GrRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 465 RSIVTDLVSQMDPHGRRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred hhhHHHHHHhcCCCCCeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 22233455667777899999999999854 56766555544
No 417
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=97.51 E-value=0.00063 Score=73.32 Aligned_cols=82 Identities=20% Similarity=0.130 Sum_probs=64.8
Q ss_pred cceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-----------chhhHHHHHHHHHH--
Q 006068 103 RGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALK-- 169 (662)
Q Consensus 103 rgiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-----------~~~qt~~~l~~~~~-- 169 (662)
|..|.......+.+++..+.+||..|+..+...+..++..++++|+|||..+- -+..+...++.+..
T Consensus 168 r~~T~Gi~~~~f~~~~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~ 247 (342)
T smart00275 168 RVPTTGIQETAFIVKKLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR 247 (342)
T ss_pred eCCccceEEEEEEECCeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc
Confidence 34455566777888999999999999999999999999999999999998752 23445555555543
Q ss_pred --cCCCcEEEeccCCCC
Q 006068 170 --YGLRPILLLNKVDRP 184 (662)
Q Consensus 170 --~~lp~IvviNKiD~~ 184 (662)
.+.|+++++||.|+.
T Consensus 248 ~~~~~piil~~NK~D~~ 264 (342)
T smart00275 248 WFANTSIILFLNKIDLF 264 (342)
T ss_pred cccCCcEEEEEecHHhH
Confidence 368999999999973
No 418
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.48 E-value=0.00032 Score=73.82 Aligned_cols=84 Identities=26% Similarity=0.287 Sum_probs=58.5
Q ss_pred HHhhcceEEEEeeCCCCc-hh-hHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 139 VVGMVEGAILVVDAGEGP-LA-QTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~-~~-qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+..+|.+++|+|+.+.. .. ....++..+...++|+++|+||+|+... .. ... ....+... .+|+
T Consensus 75 i~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~--~~---~~~-~~~~~~~~-------g~~v 141 (287)
T cd01854 75 IAANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD--EE---EEL-ELVEALAL-------GYPV 141 (287)
T ss_pred EEEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh--HH---HHH-HHHHHHhC-------CCeE
Confidence 467899999999998775 32 3344666677789999999999999532 11 111 11112222 2579
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
+++||+++. |+++|++.|.
T Consensus 142 ~~vSA~~g~--------------gi~~L~~~L~ 160 (287)
T cd01854 142 LAVSAKTGE--------------GLDELREYLK 160 (287)
T ss_pred EEEECCCCc--------------cHHHHHhhhc
Confidence 999999998 9998888763
No 419
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.48 E-value=0.00084 Score=71.58 Aligned_cols=126 Identities=20% Similarity=0.237 Sum_probs=70.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCC-------CCccccccccccccc--cceeEeeeEEEEEec------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD-------IPHERAMDSISLERE--RGITIASKVTGISWR------------ 117 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-------~~~~~v~D~~~~E~e--rgiTi~~~~~~~~~~------------ 117 (662)
+++-..|.|.-|+|||||+++|+...... +..+.-.|..-.+.. .-.++......+...
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~riaVi~NEfG~v~iD~~ll~~~~~~v~eL~~GCiCCs~~~~l~~~l~~l~~ 82 (318)
T PRK11537 3 PIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLD 82 (318)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhcccCCcccccccCcCCccccHHHHhCcCceEEEECCCEEEEccCchHHHHHHHHHH
Confidence 46678999999999999999999764321 111111232222111 112222222222211
Q ss_pred -------CeeEEEEeCCCCccchHHHHHHHh--------hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCC
Q 006068 118 -------ENELNMVDTPGHADFGGEVERVVG--------MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 118 -------~~~iniIDTPGh~dF~~ev~~~l~--------~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (662)
.....+|.|.|.++-.......+. ..|+++.|||+.......... .....+....-+|++||+|
T Consensus 83 ~~~~~~~~~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~-~~~~~Qi~~AD~IvlnK~D 161 (318)
T PRK11537 83 NLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQF-TIAQSQVGYADRILLTKTD 161 (318)
T ss_pred HHhccCCCCCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhcccc-HHHHHHHHhCCEEEEeccc
Confidence 256789999999885443333211 248899999997643321111 1111233345589999999
Q ss_pred CCC
Q 006068 183 RPA 185 (662)
Q Consensus 183 ~~~ 185 (662)
+..
T Consensus 162 l~~ 164 (318)
T PRK11537 162 VAG 164 (318)
T ss_pred cCC
Confidence 964
No 420
>PRK12289 GTPase RsgA; Reviewed
Probab=97.47 E-value=0.00012 Score=78.92 Aligned_cols=65 Identities=23% Similarity=0.277 Sum_probs=39.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
.++|+|.+|+|||||+|+|+........ .+ +....+-|.+|.......+. ++ ..|+||||...|.
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~--~v--s~~~~rGrHTT~~~~l~~l~-~g--~~liDTPG~~~~~ 238 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVG--KV--SGKLGRGRHTTRHVELFELP-NG--GLLADTPGFNQPD 238 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccc--cc--cCCCCCCCCcCceeEEEECC-CC--cEEEeCCCccccc
Confidence 4899999999999999999965321110 01 11122333455555333332 12 3799999988763
No 421
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=97.47 E-value=0.00044 Score=76.37 Aligned_cols=122 Identities=19% Similarity=0.132 Sum_probs=63.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcC-CCCCcccc--ccccc---------cccccceeEeeeEE-----E--------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG-ADIPHERA--MDSIS---------LERERGITIASKVT-----G-------- 113 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g-~~~~~~~v--~D~~~---------~E~ergiTi~~~~~-----~-------- 113 (662)
....|.++|++|+||||++-.|..... .......+ +|... ....-|+.+..... .
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al~~ 177 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRALEY 177 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHHHH
Confidence 356899999999999999888765421 00000001 11000 01112333222110 0
Q ss_pred EEecCeeEEEEeCCCCccchH----HHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCC
Q 006068 114 ISWRENELNMVDTPGHADFGG----EVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDR 183 (662)
Q Consensus 114 ~~~~~~~iniIDTPGh~dF~~----ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~ 183 (662)
+...++.+.||||||...... +..... ...|.++||+|+..| .......+... ..+++ =+++||+|.
T Consensus 178 ~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 178 AKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDG 251 (428)
T ss_pred HHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccC
Confidence 011357899999999643322 222221 236889999998754 22222222222 22443 477999995
No 422
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.46 E-value=0.00084 Score=72.32 Aligned_cols=140 Identities=18% Similarity=0.172 Sum_probs=74.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCC-------CCccccccccccccc--------cceeEeeeEEEEE--------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGAD-------IPHERAMDSISLERE--------RGITIASKVTGIS-------- 115 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-------~~~~~v~D~~~~E~e--------rgiTi~~~~~~~~-------- 115 (662)
+++-..|.|..|+|||||+++|+...... ...+.-.|..-.... .-+.+......+.
T Consensus 3 ~ipv~iltGFLGaGKTTll~~ll~~~~~~~iavi~Ne~G~~~ID~~ll~~~~~~~~~~~~v~el~nGCiCCs~~~dl~~~ 82 (341)
T TIGR02475 3 KIPVTIVTGFLGAGKTTLIRHLLQNAAGRRIAVIVNEFGDLGIDGEILKACGIEGCSEENIVELANGCICCTVADDFIPT 82 (341)
T ss_pred ccCEEEEEECCCCCHHHHHHHHHhccCCCcEEEEECCCccccchHHHHhccccccCCcceEEEeCCCCccccCcHHHHHH
Confidence 35678899999999999999999764321 011111121111110 1111111111111
Q ss_pred -------ecCeeEEEEeCCCCccchHHHHHHH-------hhcceEEEEeeCCCCchhh------H--------------H
Q 006068 116 -------WRENELNMVDTPGHADFGGEVERVV-------GMVEGAILVVDAGEGPLAQ------T--------------K 161 (662)
Q Consensus 116 -------~~~~~iniIDTPGh~dF~~ev~~~l-------~~aD~aIlVVDa~~G~~~q------t--------------~ 161 (662)
-......+|.|.|.++...-+.... -..|++|.||||....... . .
T Consensus 83 l~~l~~~~~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (341)
T TIGR02475 83 MTKLLARRQRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPAVAAGRFAADPDALDAQRAADDNLDHET 162 (341)
T ss_pred HHHHHhccCCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECchhhhhccccchhhhhhhccccccccccc
Confidence 0135788999999998654443321 2468899999997542110 0 0
Q ss_pred HHHHH-HHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHH
Q 006068 162 FVLAK-ALKYGLRPILLLNKVDRPAVSEERCDEVESLVFD 200 (662)
Q Consensus 162 ~~l~~-~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~ 200 (662)
.+-.. ..+....-+|++||+|+. +.+.+.++.+.+.+
T Consensus 163 ~~~~~~~~Qi~~AD~IvlnK~Dl~--~~~~l~~~~~~l~~ 200 (341)
T TIGR02475 163 PLEELFEDQLACADLVILNKADLL--DAAGLARVRAEIAA 200 (341)
T ss_pred hHHHHHHHHHHhCCEEEEeccccC--CHHHHHHHHHHHHH
Confidence 00001 123334468999999994 44444444444433
No 423
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.44 E-value=0.00014 Score=75.62 Aligned_cols=66 Identities=24% Similarity=0.357 Sum_probs=43.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
+..+++|++|+|||||+|+|+....... ..+ +....+-+.+|..+....+. ..=.||||||...|.
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t--~eI--S~~~~rGkHTTt~~~l~~l~---~gG~iiDTPGf~~~~ 230 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKT--GEI--SEKLGRGRHTTTHVELFPLP---GGGWIIDTPGFRSLG 230 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhh--hhh--cccCCCCCCccceEEEEEcC---CCCEEEeCCCCCccC
Confidence 4789999999999999999986432111 011 22233445566666655554 235689999998873
No 424
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.44 E-value=0.00021 Score=75.19 Aligned_cols=66 Identities=26% Similarity=0.374 Sum_probs=42.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
..++++|++|+|||||+|.|+........ .+ +....+-+++|.......+.. ...++||||..+|.
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g--~v--~~~~~~g~~tT~~~~~~~~~~---~~~liDtPG~~~~~ 227 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATG--EI--SEKLGRGRHTTTHRELFPLPG---GGLLIDTPGFREFG 227 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhcccc--ce--eccCCCCCcccceEEEEEcCC---CCEEEECCCCCccC
Confidence 57999999999999999999976432111 01 111123334555554444432 24799999998873
No 425
>PRK12288 GTPase RsgA; Reviewed
Probab=97.43 E-value=0.0007 Score=73.01 Aligned_cols=87 Identities=20% Similarity=0.312 Sum_probs=59.3
Q ss_pred HhhcceEEEEeeCCCCchhhH-HHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEE
Q 006068 140 VGMVEGAILVVDAGEGPLAQT-KFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~ 218 (662)
...+|.+++|.+......... ..++..+...++|+++|+||+|+.... . .+...+....+..+| +++++
T Consensus 118 aANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~--~-~~~~~~~~~~y~~~g-------~~v~~ 187 (347)
T PRK12288 118 AANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDE--G-RAFVNEQLDIYRNIG-------YRVLM 187 (347)
T ss_pred EEEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcH--H-HHHHHHHHHHHHhCC-------CeEEE
Confidence 466899999988765444333 345556777899999999999995321 1 112222333333333 57999
Q ss_pred cccccCccCCccCCCCCCCccchHHHHHHHHh
Q 006068 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAIIR 250 (662)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~ 250 (662)
+||+++. |+++|++.|..
T Consensus 188 vSA~tg~--------------GideL~~~L~~ 205 (347)
T PRK12288 188 VSSHTGE--------------GLEELEAALTG 205 (347)
T ss_pred EeCCCCc--------------CHHHHHHHHhh
Confidence 9999998 99999998854
No 426
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.00075 Score=67.20 Aligned_cols=138 Identities=19% Similarity=0.280 Sum_probs=87.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH---HHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---EVE 137 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---ev~ 137 (662)
+.|.++|+--+||||.-....+..... +..-.|....+|.+.-.-++ ..+.+||-||+.+|.. ..+
T Consensus 28 p~ilLMG~rRsGKsSI~KVVFhkMsPn-------eTlflESTski~~d~is~sf----inf~v~dfPGQ~~~Fd~s~D~e 96 (347)
T KOG3887|consen 28 PRILLMGLRRSGKSSIQKVVFHKMSPN-------ETLFLESTSKITRDHISNSF----INFQVWDFPGQMDFFDPSFDYE 96 (347)
T ss_pred ceEEEEeecccCcchhhheeeeccCCC-------ceeEeeccCcccHhhhhhhh----cceEEeecCCccccCCCccCHH
Confidence 359999999999999887766552211 11223333334332211111 4688999999988643 456
Q ss_pred HHHhhcceEEEEeeCCCCch-hhHHHHHHHHHHcCC----CcEEEeccCCCCCCCH--HHHHHHHHHHHHHHHhcCCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPL-AQTKFVLAKALKYGL----RPILLLNKVDRPAVSE--ERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~~~l----p~IvviNKiD~~~~~~--~~~~ei~~~v~~l~~~~g~~~ 209 (662)
...+.+.+.|+|+||.+..+ +.++-++..++.+++ .+=|++.|+|-...+. +....+.++..+-+.+.|...
T Consensus 97 ~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~ 175 (347)
T KOG3887|consen 97 MIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEK 175 (347)
T ss_pred HHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhcc
Confidence 78899999999999987644 455556666666654 3458999999754332 222334455555566666544
No 427
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.40 E-value=0.00033 Score=75.41 Aligned_cols=123 Identities=15% Similarity=0.176 Sum_probs=63.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc--ccccc---------cccccceeEeeeEE--E-------EE-e
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS---------LERERGITIASKVT--G-------IS-W 116 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~---------~E~ergiTi~~~~~--~-------~~-~ 116 (662)
.+.+.++++|+.|+||||++..|............+ .|... ....-++.+..... . +. .
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~~ 283 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTYV 283 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHhc
Confidence 346789999999999999999987643211110001 11110 01111222211000 0 00 0
Q ss_pred cCeeEEEEeCCCCccch----HHHHHHHhh--cceEEEEeeCCCCchhhHHHHHHHHHHc-CCC-cEEEeccCCCC
Q 006068 117 RENELNMVDTPGHADFG----GEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKY-GLR-PILLLNKVDRP 184 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~----~ev~~~l~~--aD~aIlVVDa~~G~~~qt~~~l~~~~~~-~lp-~IvviNKiD~~ 184 (662)
.++.+.||||||..... .+....+.. .|.++||+++... .+. ....+..+ .++ --++++|+|..
T Consensus 284 ~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~--~~d--~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 284 NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMK--SAD--VMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCccc--HHH--HHHHHHhcCcCCCCEEEEEcccCC
Confidence 35789999999985433 333333333 3566788887432 222 22222222 233 25779999974
No 428
>PRK10867 signal recognition particle protein; Provisional
Probab=97.39 E-value=0.00074 Score=74.68 Aligned_cols=122 Identities=19% Similarity=0.220 Sum_probs=63.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc----CCC-------CCcccccccc-ccccccceeEeeeEE-----E--------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC----GAD-------IPHERAMDSI-SLERERGITIASKVT-----G-------- 113 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~----g~~-------~~~~~v~D~~-~~E~ergiTi~~~~~-----~-------- 113 (662)
....|.++|+.|+||||++-.|.... |.. .+.....+.. ......|+.+..... .
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~~~ 178 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAALEE 178 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHHH
Confidence 35689999999999999777776532 210 0000000000 001122333322110 0
Q ss_pred EEecCeeEEEEeCCCCccc----hHHHHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCC
Q 006068 114 ISWRENELNMVDTPGHADF----GGEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDR 183 (662)
Q Consensus 114 ~~~~~~~iniIDTPGh~dF----~~ev~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~ 183 (662)
....++.+.||||||...+ ..+...... ..|.++||+|+..| .......+... ..+++ -+++||+|-
T Consensus 179 a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~-~~~~i~giIlTKlD~ 252 (433)
T PRK10867 179 AKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFN-EALGLTGVILTKLDG 252 (433)
T ss_pred HHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHH-hhCCCCEEEEeCccC
Confidence 0113578999999995533 223222222 45788999998654 12222222222 23443 478899996
No 429
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.36 E-value=0.00024 Score=75.96 Aligned_cols=56 Identities=27% Similarity=0.382 Sum_probs=43.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~ 130 (662)
.++.++|-+|+|||||+|+|++... ....+.+|+|.......+. ..+.|+||||..
T Consensus 133 ~~v~vvG~PNVGKSslIN~L~~k~~-----------~~~s~~PG~Tk~~q~i~~~---~~i~LlDtPGii 188 (322)
T COG1161 133 IRVGVVGYPNVGKSTLINRLLGKKV-----------AKTSNRPGTTKGIQWIKLD---DGIYLLDTPGII 188 (322)
T ss_pred eEEEEEcCCCCcHHHHHHHHhcccc-----------eeeCCCCceecceEEEEcC---CCeEEecCCCcC
Confidence 5699999999999999999998843 2334555888776665554 459999999953
No 430
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=97.34 E-value=0.00046 Score=66.53 Aligned_cols=115 Identities=17% Similarity=0.150 Sum_probs=71.7
Q ss_pred eCCCCCHHHHHHHHHHhcCCCCCccccccccccccc-----cceeE----eeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 67 AHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERE-----RGITI----ASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 67 Gh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~e-----rgiTi----~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
+-.|+||||+.-.|....-.......+.|.+..... ++... ..-......+++.+.|+|||+... ....
T Consensus 7 ~kgG~GKTt~a~~LA~~la~~g~~vllvD~D~q~~~~~~~~~~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~--~~~~ 84 (169)
T cd02037 7 GKGGVGKSTVAVNLALALAKLGYKVGLLDADIYGPSIPKMWRGPMKMGAIKQFLTDVDWGELDYLVIDMPPGTG--DEHL 84 (169)
T ss_pred CCCcCChhHHHHHHHHHHHHcCCcEEEEeCCCCCCCchHHHhCcchHHHHHHHHHHhhcCCCCEEEEeCCCCCc--HHHH
Confidence 457899999988776543221122222333222110 00000 000001112478999999999743 3333
Q ss_pred HHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCC
Q 006068 138 RVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDR 183 (662)
Q Consensus 138 ~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~ 183 (662)
..+ ..+|.+|+|+....-....+...++.+.+.+++++ +++|+.+.
T Consensus 85 ~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~ 133 (169)
T cd02037 85 TLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYF 133 (169)
T ss_pred HHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCcc
Confidence 344 58999999999887777888899999999999875 78999986
No 431
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.34 E-value=0.00058 Score=71.31 Aligned_cols=84 Identities=18% Similarity=0.187 Sum_probs=60.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-----------------CeeE
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-----------------ENEL 121 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-----------------~~~i 121 (662)
+...++|+|-+++|||||+|+|+...- ..+..+-.||+...+.+... .-.+
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a------------~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l 86 (391)
T KOG1491|consen 19 NNLKIGIVGLPNVGKSTFFNALTKSKA------------GAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFL 86 (391)
T ss_pred CcceeeEeeCCCCchHHHHHHHhcCCC------------CccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeE
Confidence 345899999999999999999997632 22233344454444443321 2369
Q ss_pred EEEeCCCCcc-------chHHHHHHHhhcceEEEEeeCCC
Q 006068 122 NMVDTPGHAD-------FGGEVERVVGMVEGAILVVDAGE 154 (662)
Q Consensus 122 niIDTPGh~d-------F~~ev~~~l~~aD~aIlVVDa~~ 154 (662)
++.|+.|... ++......+|.+|+++-||++.+
T Consensus 87 ~v~DIAGLvkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 87 TVYDIAGLVKGASAGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred EEEeecccccCcccCcCchHHHHHhhhhccceeEEEEecC
Confidence 9999999543 55667788999999999999864
No 432
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=97.34 E-value=0.00041 Score=69.27 Aligned_cols=63 Identities=33% Similarity=0.419 Sum_probs=49.1
Q ss_pred CeeEEEEeCC-CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcC-CCcEEEeccCCC
Q 006068 118 ENELNMVDTP-GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG-LRPILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTP-Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~-lp~IvviNKiD~ 183 (662)
.+.+.++||= |.+-|+.- ....+|.+|+|+|.........++.-+.+.+.+ .++.+|+||+|-
T Consensus 133 ~~e~VivDtEAGiEHfgRg---~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 133 RYEVVIVDTEAGIEHFGRG---TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred cCcEEEEecccchhhhccc---cccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 3678888884 66666543 456799999999987766677778888889999 566789999996
No 433
>cd03703 aeIF5B_II aeIF5B_II: This family represents the domain II of archeal and eukaryotic aeIF5B. aeIF5B is a homologue of prokaryotic Initiation Factor 2 (IF2). Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of joining of 60S subunits. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains of EF1A, eEF1A and aeIF2gamma.
Probab=97.33 E-value=0.0015 Score=58.02 Aligned_cols=83 Identities=19% Similarity=0.206 Sum_probs=65.4
Q ss_pred eeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCC-------ceeeecccC--CCC
Q 006068 264 QMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGT-------GMVLIDSAG--AGD 334 (662)
Q Consensus 264 ~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~-------~~~~v~~a~--AGd 334 (662)
++.|.....+++.|.++..-+++|+|+.||.|.+....++ ...||+.|+...+. +...++++. +|=
T Consensus 2 ~gtVlEvk~~~G~G~t~dvIl~~GtL~~GD~Iv~g~~~Gp-----i~tkVRaLl~~~~~~E~r~~~~~~~vk~v~aa~gv 76 (110)
T cd03703 2 QGTVLEVKEEEGLGTTIDVILYDGTLREGDTIVVCGLNGP-----IVTKVRALLKPQPLKELRVKSRFIHVKEVKAAAGV 76 (110)
T ss_pred cEEEEEEEEcCCCceEEEEEEECCeEecCCEEEEccCCCC-----ceEEEeEecCCCCchhhccccccceeeEEecCCCc
Confidence 4567778889999999999999999999999998764322 45699999998885 234566666 777
Q ss_pred EEEEcCcCCCccCceee
Q 006068 335 IISVAGMTKPSIGHTVA 351 (662)
Q Consensus 335 Ivai~gl~~~~~GdTl~ 351 (662)
-|...||+++..|+.|.
T Consensus 77 kI~~~gL~~v~aG~~~~ 93 (110)
T cd03703 77 KILAPDLEKAIAGSPLL 93 (110)
T ss_pred EEEeCCCccccCCCEEE
Confidence 77778999988888764
No 434
>PRK13796 GTPase YqeH; Provisional
Probab=97.30 E-value=0.00034 Score=76.10 Aligned_cols=61 Identities=28% Similarity=0.444 Sum_probs=42.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~ 130 (662)
++++++|.+|+|||||+|+|+....... +.......+|+|.......+ . ....|+||||..
T Consensus 161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~------~~~~~s~~pGTT~~~~~~~l--~-~~~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVGKSTLINRIIKEITGEK------DVITTSRFPGTTLDKIEIPL--D-DGSFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCcHHHHHHHHHhhccCcc------ceEEecCCCCccceeEEEEc--C-CCcEEEECCCcc
Confidence 5899999999999999999997631110 11123456788877654433 2 235899999974
No 435
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.25 E-value=0.0041 Score=67.22 Aligned_cols=168 Identities=21% Similarity=0.319 Sum_probs=95.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCC-----CccccccccccccccceeEeeeEEE--------EEec---CeeEEEE
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADI-----PHERAMDSISLERERGITIASKVTG--------ISWR---ENELNMV 124 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~-----~~~~v~D~~~~E~ergiTi~~~~~~--------~~~~---~~~iniI 124 (662)
.-|+++|++-.||||++.++....-... ...+..|-.|+.- .|-||....-. +..+ ..++.+|
T Consensus 18 IYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~-aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 18 IYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSG-AGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred eEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCC-CCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 3699999999999999999987653211 1234555555432 24454432221 2222 4688899
Q ss_pred eCCCCc--------c-----------------chHHHHHHHhhc--c----eEEEEeeCCCCc------hhhHHHHHHHH
Q 006068 125 DTPGHA--------D-----------------FGGEVERVVGMV--E----GAILVVDAGEGP------LAQTKFVLAKA 167 (662)
Q Consensus 125 DTPGh~--------d-----------------F~~ev~~~l~~a--D----~aIlVVDa~~G~------~~qt~~~l~~~ 167 (662)
||-|+. + |....+-.-+.+ | |+++--|..=+- ....+++...+
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 999842 1 333322222221 1 234444433221 23456788899
Q ss_pred HHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHH
Q 006068 168 LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDA 247 (662)
Q Consensus 168 ~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~ 247 (662)
++.|.|+||++|-.+-. + ....++.+++.+ ++ ++||+++++..=. ...+..+|+.
T Consensus 177 k~igKPFvillNs~~P~--s-~et~~L~~eL~e---kY-------~vpVlpvnc~~l~------------~~DI~~Il~~ 231 (492)
T PF09547_consen 177 KEIGKPFVILLNSTKPY--S-EETQELAEELEE---KY-------DVPVLPVNCEQLR------------EEDITRILEE 231 (492)
T ss_pred HHhCCCEEEEEeCCCCC--C-HHHHHHHHHHHH---Hh-------CCcEEEeehHHcC------------HHHHHHHHHH
Confidence 99999999999988742 2 233344444432 22 3677777765432 1256666666
Q ss_pred HHhhCCC
Q 006068 248 IIRHVPP 254 (662)
Q Consensus 248 I~~~lP~ 254 (662)
++-.+|-
T Consensus 232 vLyEFPV 238 (492)
T PF09547_consen 232 VLYEFPV 238 (492)
T ss_pred HHhcCCc
Confidence 6666653
No 436
>PRK13796 GTPase YqeH; Provisional
Probab=97.20 E-value=0.0014 Score=71.41 Aligned_cols=100 Identities=22% Similarity=0.134 Sum_probs=61.9
Q ss_pred cchHHHHHHHhhcc-eEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 131 DFGGEVERVVGMVE-GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 131 dF~~ev~~~l~~aD-~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
+|.. +...+...| .+++|||+.+-.......+.+.. .+.|+++|+||+|+..... ...++.+.+..++...|...
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~~~~-~~~~i~~~l~~~~k~~g~~~ 133 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLPKSV-KKNKVKNWLRQEAKELGLRP 133 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCCCcc-CHHHHHHHHHHHHHhcCCCc
Confidence 4544 444555555 88999999874433322222222 3789999999999954211 11223333334444455431
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
..++.+||++|+ |+++|++.|.++.
T Consensus 134 ----~~v~~vSAk~g~--------------gI~eL~~~I~~~~ 158 (365)
T PRK13796 134 ----VDVVLISAQKGH--------------GIDELLEAIEKYR 158 (365)
T ss_pred ----CcEEEEECCCCC--------------CHHHHHHHHHHhc
Confidence 148999999999 9999999997653
No 437
>PRK01889 GTPase RsgA; Reviewed
Probab=97.20 E-value=0.0015 Score=70.85 Aligned_cols=82 Identities=24% Similarity=0.232 Sum_probs=60.1
Q ss_pred HhhcceEEEEeeCCCCchh-hHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEE
Q 006068 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY 218 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~ 218 (662)
...+|.+++|+++...+.. ....++..+...++++++|+||+|+.+. . .+..+.+..+ . ..+|+++
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~-~---~~~~~~~~~~--~-------~g~~Vi~ 176 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCED-A---EEKIAEVEAL--A-------PGVPVLA 176 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCC-H---HHHHHHHHHh--C-------CCCcEEE
Confidence 4678999999999766665 5556788888999999999999999542 1 1122233222 1 1367999
Q ss_pred cccccCccCCccCCCCCCCccchHHHHHHH
Q 006068 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (662)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I 248 (662)
+|+++|. |++.|.+.|
T Consensus 177 vSa~~g~--------------gl~~L~~~L 192 (356)
T PRK01889 177 VSALDGE--------------GLDVLAAWL 192 (356)
T ss_pred EECCCCc--------------cHHHHHHHh
Confidence 9999998 888888876
No 438
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.20 E-value=0.0028 Score=69.17 Aligned_cols=123 Identities=16% Similarity=0.216 Sum_probs=67.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCC----CCCccc--cccccc---------cccccceeEeeeEEE-------EEec
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGA----DIPHER--AMDSIS---------LERERGITIASKVTG-------ISWR 117 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~----~~~~~~--v~D~~~---------~E~ergiTi~~~~~~-------~~~~ 117 (662)
...|+++|+.|+||||.+..|...... ....-. ..|... ....-|+.+...... -...
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~ 253 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK 253 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence 468999999999999999888754210 000000 011100 001112222211110 0124
Q ss_pred CeeEEEEeCCCCccch----HHHHHHHhhc--c-eEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 118 ENELNMVDTPGHADFG----GEVERVVGMV--E-GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~----~ev~~~l~~a--D-~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
++.+.||||||..... .+....+..+ + -.+||+||+.+..... +.+......+ +-=++++|+|-.
T Consensus 254 ~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~-~~~~I~TKlDet 325 (388)
T PRK12723 254 DFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFS-YKTVIFTKLDET 325 (388)
T ss_pred CCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCC-CCEEEEEeccCC
Confidence 7899999999965432 3445555544 3 4899999988733322 3333332222 235789999974
No 439
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.19 E-value=0.0008 Score=73.98 Aligned_cols=123 Identities=21% Similarity=0.197 Sum_probs=64.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc----CCCCCccccccccc---------cccccceeEeeeEEE-------EEecC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC----GADIPHERAMDSIS---------LERERGITIASKVTG-------ISWRE 118 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~----g~~~~~~~v~D~~~---------~E~ergiTi~~~~~~-------~~~~~ 118 (662)
.-..|+++|..|+||||++..|.... +.....-...|... ..+..|+........ ....+
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~~l~~ 269 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLHELRG 269 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHHHhcC
Confidence 34689999999999999999887642 11110000001100 011113322211111 12346
Q ss_pred eeEEEEeCCCCccchHHHHHHHhh------cceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCC
Q 006068 119 NELNMVDTPGHADFGGEVERVVGM------VEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~------aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (662)
+.+.+|||+|..........-+.. .+-.+||+||+.+...- ..++.... .+++ =++++|+|-.
T Consensus 270 ~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~-~~~~~~f~--~~~~~~~I~TKlDEt 339 (420)
T PRK14721 270 KHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTL-DEVISAYQ--GHGIHGCIITKVDEA 339 (420)
T ss_pred CCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHH-HHHHHHhc--CCCCCEEEEEeeeCC
Confidence 789999999976543333222222 23478999998643211 12222222 2333 4788999974
No 440
>cd03701 IF2_IF5B_II IF2_IF5B_II: This family represents the domain II of prokaryotic Initiation Factor 2 (IF2) and its archeal and eukaryotic homologue aeIF5B. IF2, the largest initiation factor is an essential GTP binding protein. In E. coli three natural forms of IF2 exist in the cell, IF2alpha, IF2beta1, and IF2beta2. Disruption of the eIF5B gene (FUN12) in yeast causes a severe slow-growth phenotype, associated with a defect in translation. eIF5B has a function analogous to prokaryotic IF2 in mediating the joining of the 60S ribosomal subunit. The eIF5B consists of three N-terminal domains (I, II, II) connected by a long helix to domain IV. Domain I is a G domain, domain II and IV are beta-barrels and domain III has a novel alpha-beta-alpha sandwich fold. The G domain and the beta-barrel domain II display a similar structure and arrangement to the homologous domains in EF1A, eEF1A and aeIF2gamma.
Probab=97.18 E-value=0.0018 Score=56.37 Aligned_cols=76 Identities=22% Similarity=0.304 Sum_probs=63.1
Q ss_pred eeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCC
Q 006068 264 QMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTK 343 (662)
Q Consensus 264 ~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~ 343 (662)
++.|.....+...|.++..-|.+|+|++||.+.... ...||..++...| ..+.+|.|++.+.+.|+++
T Consensus 2 ~g~ViE~~~~~g~G~vatviV~~GtL~~Gd~iv~G~---------~~GkVr~~~d~~g---~~v~~a~Ps~~v~i~g~~~ 69 (95)
T cd03701 2 EGTVIESKLDKGRGPVATVIVQNGTLKKGDVIVAGG---------TYGKIRTMVDENG---KALLEAGPSTPVEILGLKD 69 (95)
T ss_pred eEEEEEEEecCCCCeeEEEEEEcCeEecCCEEEECC---------ccceEEEEECCCC---CCccccCCCCCEEEeeecC
Confidence 457788888999999999999999999999998763 3468999988776 4789999999999999876
Q ss_pred -CccCceee
Q 006068 344 -PSIGHTVA 351 (662)
Q Consensus 344 -~~~GdTl~ 351 (662)
...||.+-
T Consensus 70 ~p~aGd~~~ 78 (95)
T cd03701 70 VPKAGDGVL 78 (95)
T ss_pred CccCCCEEE
Confidence 44677653
No 441
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.12 E-value=0.0034 Score=53.38 Aligned_cols=77 Identities=19% Similarity=0.164 Sum_probs=53.0
Q ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH-HHHHHh
Q 006068 63 VAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE-VERVVG 141 (662)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e-v~~~l~ 141 (662)
+++.|..|+||||++..|...... .|..+ ..+. .+.++|+|+..+.... ....+.
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~----------------~g~~v----~~~~----d~iivD~~~~~~~~~~~~~~~~~ 57 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAK----------------RGKRV----LLID----DYVLIDTPPGLGLLVLLCLLALL 57 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH----------------CCCeE----EEEC----CEEEEeCCCCccchhhhhhhhhh
Confidence 678899999999999999876311 11111 1111 7999999997764321 245678
Q ss_pred hcceEEEEeeCCCCchhhHHHH
Q 006068 142 MVEGAILVVDAGEGPLAQTKFV 163 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~~~ 163 (662)
.+|.++++++............
T Consensus 58 ~~~~vi~v~~~~~~~~~~~~~~ 79 (99)
T cd01983 58 AADLVIIVTTPEALAVLGARRL 79 (99)
T ss_pred hCCEEEEecCCchhhHHHHHHH
Confidence 8999999999877655555544
No 442
>PHA02518 ParA-like protein; Provisional
Probab=97.12 E-value=0.0033 Score=62.48 Aligned_cols=64 Identities=8% Similarity=0.108 Sum_probs=43.1
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH---c--CCCcE-EEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK---Y--GLRPI-LLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~---~--~lp~I-vviNKiD~ 183 (662)
.+.+.||||||.. ......++..+|.+|+++....-.......+++.+.+ . +.|.+ ++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 5789999999974 4557789999999999998765433333333333332 2 45554 66677664
No 443
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0025 Score=66.20 Aligned_cols=124 Identities=15% Similarity=0.180 Sum_probs=64.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccc--cccccc---------cccccceeEeeeEEE---------E-Eec
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHER--AMDSIS---------LERERGITIASKVTG---------I-SWR 117 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~--v~D~~~---------~E~ergiTi~~~~~~---------~-~~~ 117 (662)
+...++++|..|+|||||+..|............ .+|... ....-++.+...... + ...
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~ 153 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 153 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence 3469999999999999999988765321000000 011110 000112222111000 0 112
Q ss_pred CeeEEEEeCCCCccch----HHHHHHHhh--cceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCC
Q 006068 118 ENELNMVDTPGHADFG----GEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPA 185 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~----~ev~~~l~~--aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~ 185 (662)
++.+.||||||...+. .+....++. .|-++||+||+.+.. +...+++.... ++ -=++++|+|...
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~-d~~~~~~~f~~--~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSK-DMIEIITNFKD--IHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHH-HHHHHHHHhCC--CCCCEEEEEeecCCC
Confidence 5789999999976433 333333332 356899999875321 22222222222 33 247899999743
No 444
>PRK00098 GTPase RsgA; Reviewed
Probab=97.11 E-value=0.00076 Score=71.38 Aligned_cols=65 Identities=20% Similarity=0.326 Sum_probs=38.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF 132 (662)
..++++|++|+|||||+|+|+....... ..+.. ...+-+.+|.......+. ....|+||||...|
T Consensus 165 k~~~~~G~sgvGKStlin~l~~~~~~~~--g~v~~--~~~~G~htT~~~~~~~~~---~~~~~~DtpG~~~~ 229 (298)
T PRK00098 165 KVTVLAGQSGVGKSTLLNALAPDLELKT--GEISE--ALGRGKHTTTHVELYDLP---GGGLLIDTPGFSSF 229 (298)
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcCCCC--cceec--cCCCCCcccccEEEEEcC---CCcEEEECCCcCcc
Confidence 4799999999999999999986532111 01100 011122344333332222 23589999998764
No 445
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=97.08 E-value=0.0014 Score=66.63 Aligned_cols=65 Identities=8% Similarity=0.077 Sum_probs=46.8
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHH------HcCCCcEEEeccCCC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKAL------KYGLRPILLLNKVDR 183 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~------~~~lp~IvviNKiD~ 183 (662)
+++.+.||||||+.+ .....++..+|.+|+.+.+..-....+...+.... ..++|..+++|.++.
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~~ 152 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVPV 152 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEeccc
Confidence 468999999999874 45677899999999988876544444444443332 236788899999973
No 446
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.06 E-value=0.0021 Score=69.47 Aligned_cols=146 Identities=18% Similarity=0.290 Sum_probs=76.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCC--CCCc--cccccccccc---------cccceeEeeeEEEE-------EecC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA--DIPH--ERAMDSISLE---------RERGITIASKVTGI-------SWRE 118 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~--~~~~--~~v~D~~~~E---------~ergiTi~~~~~~~-------~~~~ 118 (662)
+.+.|+++|+.|+||||.+-.|...... .... --.+|+.... +--|+++......- .+.+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 4789999999999999988888766431 1000 0011221110 00122222211111 1236
Q ss_pred eeEEEEeCCCCccch----HHHHHHHhhc--ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHH
Q 006068 119 NELNMVDTPGHADFG----GEVERVVGMV--EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCD 192 (662)
Q Consensus 119 ~~iniIDTPGh~dF~----~ev~~~l~~a--D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ 192 (662)
+.+.||||.|+.... .+....+..+ .-..||++|+..- ..-.+++......++. =++++|+|-...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f~~~~i~-~~I~TKlDET~s------ 353 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQFSLFPID-GLIFTKLDETTS------ 353 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHhccCCcc-eeEEEcccccCc------
Confidence 799999999976543 3444444444 2367888886521 1122233333222322 367899997432
Q ss_pred HHHHHHHHHHHhcCCCCcCCCccEEEccc
Q 006068 193 EVESLVFDLFANLGATDEQLDFPVLYASA 221 (662)
Q Consensus 193 ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA 221 (662)
.-.+.+++...+ .|+-|++-
T Consensus 354 --~G~~~s~~~e~~-------~PV~YvT~ 373 (407)
T COG1419 354 --LGNLFSLMYETR-------LPVSYVTN 373 (407)
T ss_pred --hhHHHHHHHHhC-------CCeEEEeC
Confidence 223344443332 47878774
No 447
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=97.06 E-value=0.0025 Score=63.35 Aligned_cols=66 Identities=24% Similarity=0.284 Sum_probs=52.1
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (662)
.+.+.|||||..... .+.......+|.+|+|+++............+.+.+.+.+++ +|+||.|..
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 578999999973221 233345678999999999988777888888888888898875 889999964
No 448
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=97.03 E-value=0.0039 Score=63.73 Aligned_cols=65 Identities=18% Similarity=0.292 Sum_probs=50.0
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (662)
++.+.|||||+-.+ .....++..+|.+|+|+++.......+....+.+...+++. .+++|+.|..
T Consensus 108 ~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 58999999998654 35667788999999999987655555666666666778875 4899999863
No 449
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.002 Score=70.45 Aligned_cols=122 Identities=17% Similarity=0.171 Sum_probs=63.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCC-CCCcccc--cccccc------c---cccceeEeeeE------EEEEecCeeEE
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGA-DIPHERA--MDSISL------E---RERGITIASKV------TGISWRENELN 122 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~-~~~~~~v--~D~~~~------E---~ergiTi~~~~------~~~~~~~~~in 122 (662)
..++++|++|+||||++..|...... ......+ .|.... . ...|+...... ..+.-.++.+.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V 303 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI 303 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence 46899999999999999999854210 0000001 111000 0 11122221100 00011367899
Q ss_pred EEeCCCCccch----HHHHHHHhhc-----ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 123 MVDTPGHADFG----GEVERVVGMV-----EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 123 iIDTPGh~dF~----~ev~~~l~~a-----D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
||||||..... .+....+..+ .-.+||+||..+.... ...++.-...++ -=++++|+|-.
T Consensus 304 LIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~~~-~glIlTKLDEt 372 (432)
T PRK12724 304 LIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAYESLNY-RRILLTKLDEA 372 (432)
T ss_pred EEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCCCC-CEEEEEcccCC
Confidence 99999975432 2333333332 2578999998764322 222222222222 24788999974
No 450
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=96.97 E-value=0.0022 Score=62.53 Aligned_cols=121 Identities=20% Similarity=0.194 Sum_probs=62.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHH-hcCCC-------CCccccccccccccccceeE---eeeEEEEE--------------e
Q 006068 62 NVAVIAHVDHGKTTLMDRLLR-QCGAD-------IPHERAMDSISLERERGITI---ASKVTGIS--------------W 116 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~-~~g~~-------~~~~~v~D~~~~E~ergiTi---~~~~~~~~--------------~ 116 (662)
-+.|.|..|||||||+++|+. ..... +..+.-.|..-.++ .|+++ ......+. .
T Consensus 2 v~ii~GfLGsGKTTli~~ll~~~~~~~~~~vI~ne~g~~~iD~~~l~~-~~~~v~~l~~gcicc~~~~~~~~~l~~l~~~ 80 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLKRNRQGERVAVIVNEFGEVNIDAELLQE-DGVPVVELNNGCICCTLRDDLVEALRRLLRE 80 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTS-EEEEECSTTSTHHHHHHHHT-TT-EEEEECTTTESS-TTS-HHHHHHHHCCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCceeEEEEccccccccchhhhcc-cceEEEEecCCCcccccHHHHHHHHHHHHHh
Confidence 468999999999999999994 32211 01111112211111 12221 11111100 1
Q ss_pred c--CeeEEEEeCCCCccchHH-----HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 117 R--ENELNMVDTPGHADFGGE-----VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 117 ~--~~~iniIDTPGh~dF~~e-----v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
. ...+.||-+.|..+.... .....-..+.+|.|||+..-...... .-....+....-++++||+|+.
T Consensus 81 ~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~-~~~~~~Qi~~ADvIvlnK~D~~ 154 (178)
T PF02492_consen 81 YEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENI-PELLREQIAFADVIVLNKIDLV 154 (178)
T ss_dssp CHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTH-CHHHHHHHCT-SEEEEE-GGGH
T ss_pred cCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccc-hhhhhhcchhcCEEEEeccccC
Confidence 1 357899999997775433 11222346889999999653111111 1112233455679999999984
No 451
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.90 E-value=0.0026 Score=71.12 Aligned_cols=168 Identities=20% Similarity=0.209 Sum_probs=83.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc----CCCCCcccccccc--------c-cccccceeEeeeEEE-------EEecCe
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC----GADIPHERAMDSI--------S-LERERGITIASKVTG-------ISWREN 119 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~----g~~~~~~~v~D~~--------~-~E~ergiTi~~~~~~-------~~~~~~ 119 (662)
...++++|+.|+||||++..|.... |.....--..|.. . ..+..|+.+...... ....++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL~~L~d~ 335 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALSELRNK 335 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHHHhccCC
Confidence 4679999999999999999998643 1111100001111 0 011223332211111 122467
Q ss_pred eEEEEeCCCCccchHHHHHHHhh-cc-----eEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHH
Q 006068 120 ELNMVDTPGHADFGGEVERVVGM-VE-----GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDE 193 (662)
Q Consensus 120 ~iniIDTPGh~dF~~ev~~~l~~-aD-----~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~e 193 (662)
.+.+|||+|...........+.+ .+ -.+||+|+..+.. ...+.++.....+ ..-+++||+|-.. ..
T Consensus 336 d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~-~l~~i~~~f~~~~-~~g~IlTKlDet~-~~----- 407 (484)
T PRK06995 336 HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGD-TLNEVVQAYRGPG-LAGCILTKLDEAA-SL----- 407 (484)
T ss_pred CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHH-HHHHHHHHhccCC-CCEEEEeCCCCcc-cc-----
Confidence 89999999954433222222222 12 2689999976532 1122222222223 2346789999632 11
Q ss_pred HHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 194 VESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 194 i~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
-.+.++....+ .|+.|++.-.+.. . +...-+-+.|.+.++..
T Consensus 408 --G~~l~i~~~~~-------lPI~yvt~GQ~VP-e------DL~~a~~~~lv~~ll~~ 449 (484)
T PRK06995 408 --GGALDVVIRYK-------LPLHYVSNGQRVP-E------DLHLANKKFLLHRAFCA 449 (484)
T ss_pred --hHHHHHHHHHC-------CCeEEEecCCCCh-h------hhccCCHHHHHHHHhcC
Confidence 22333333333 5788877433320 0 01112456677777654
No 452
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.90 E-value=0.0045 Score=72.51 Aligned_cols=124 Identities=21% Similarity=0.239 Sum_probs=62.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc----CCCCCccccccccc---------cccccceeEeeeEE--E-----EEecCe
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC----GADIPHERAMDSIS---------LERERGITIASKVT--G-----ISWREN 119 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~----g~~~~~~~v~D~~~---------~E~ergiTi~~~~~--~-----~~~~~~ 119 (662)
...|+++|+.|+||||++..|.... |.....--..|... .....|+.+..... . -...++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~~~~ 264 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAALGDK 264 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHhcCC
Confidence 3579999999999999999988543 21000000011110 00111222211100 0 012367
Q ss_pred eEEEEeCCCCccchHHHHHHHhh------cceEEEEeeCCCCchhhHHHHHHHHHHc-CCC-cEEEeccCCCC
Q 006068 120 ELNMVDTPGHADFGGEVERVVGM------VEGAILVVDAGEGPLAQTKFVLAKALKY-GLR-PILLLNKVDRP 184 (662)
Q Consensus 120 ~iniIDTPGh~dF~~ev~~~l~~------aD~aIlVVDa~~G~~~qt~~~l~~~~~~-~lp-~IvviNKiD~~ 184 (662)
.+.||||||...........+.. .+-.+||+|+..+.. .-.++++..... +++ -=++++|+|-.
T Consensus 265 D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~-~l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 265 HLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGD-TLNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHH-HHHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 89999999954333333332322 244899999985321 111222222221 222 24779999974
No 453
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=96.85 E-value=0.0048 Score=61.79 Aligned_cols=67 Identities=19% Similarity=0.206 Sum_probs=41.1
Q ss_pred cCeeEEEEeCCCCccchHHHHHH--HhhcceEEEEeeCCCCchhhHHHHHHHHHHc----CCCc-EEEeccCCCC
Q 006068 117 RENELNMVDTPGHADFGGEVERV--VGMVEGAILVVDAGEGPLAQTKFVLAKALKY----GLRP-ILLLNKVDRP 184 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~--l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~----~lp~-IvviNKiD~~ 184 (662)
+.+.+.||||||........ .. ++.||.+|++++...--......+++.+.+. +++. .+++||+|..
T Consensus 115 ~~yD~ilID~~g~~~~~~~~-~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~~ 188 (212)
T cd02117 115 DDLDVVLYDVLGDVVCGGFA-MPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNTD 188 (212)
T ss_pred cCCCEEEEecCCCceecccc-cccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCCc
Confidence 46899999999866321111 12 2489999999987543222333444444443 4444 3899999963
No 454
>PRK13695 putative NTPase; Provisional
Probab=96.83 E-value=0.0031 Score=61.08 Aligned_cols=35 Identities=14% Similarity=0.113 Sum_probs=28.4
Q ss_pred EEEee---CCCCchhhHHHHHHHHHHcCCCcEEEeccC
Q 006068 147 ILVVD---AGEGPLAQTKFVLAKALKYGLRPILLLNKV 181 (662)
Q Consensus 147 IlVVD---a~~G~~~qt~~~l~~~~~~~lp~IvviNKi 181 (662)
++++| ..+....+....+..+.+.+.|+|+++||.
T Consensus 99 ~lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~ 136 (174)
T PRK13695 99 VIIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRR 136 (174)
T ss_pred EEEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECch
Confidence 47889 556666777788888888899999999984
No 455
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=96.82 E-value=0.0071 Score=62.10 Aligned_cols=64 Identities=17% Similarity=0.285 Sum_probs=50.4
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCC-CcEEEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGL-RPILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~l-p~IvviNKiD~ 183 (662)
.+.+.|||||+..+ .....++..+|.+|+|+.+.......+..+++.+...+. +..+++|+++.
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 57899999998654 345677889999999999876666677777777777765 46689999985
No 456
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.80 E-value=0.0076 Score=66.31 Aligned_cols=30 Identities=30% Similarity=0.458 Sum_probs=26.4
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCC
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGA 86 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (662)
+..+++|+|+|+.++|||||+++|....|.
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~ 245 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNT 245 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCC
Confidence 345789999999999999999999988664
No 457
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=96.73 E-value=0.005 Score=60.43 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=42.9
Q ss_pred CeeEEEEeCCCCccc------hHHHHHHHhhcc---eEEEEeeCCCCc-----hhhHHHHHHHHHHcCCCcEEEeccCCC
Q 006068 118 ENELNMVDTPGHADF------GGEVERVVGMVE---GAILVVDAGEGP-----LAQTKFVLAKALKYGLRPILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF------~~ev~~~l~~aD---~aIlVVDa~~G~-----~~qt~~~l~~~~~~~lp~IvviNKiD~ 183 (662)
+-.+.++|+||+..+ .....+.+..-+ ++++++|+.--+ .......+.......+|.|=|+.|||+
T Consensus 97 eddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 97 EDDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQFLVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred cCCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccchhhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 347899999997653 334444444433 467777764311 122223344555678999999999998
Q ss_pred CC
Q 006068 184 PA 185 (662)
Q Consensus 184 ~~ 185 (662)
..
T Consensus 177 lk 178 (273)
T KOG1534|consen 177 LK 178 (273)
T ss_pred hh
Confidence 54
No 458
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=96.70 E-value=0.0022 Score=66.47 Aligned_cols=103 Identities=20% Similarity=0.127 Sum_probs=62.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc-cchHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA-DFGGEVER 138 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~-dF~~ev~~ 138 (662)
..++-|+|-+|+|||||+|++......... ......+.|+|+..+...--.....+.++||||.- .-....+.
T Consensus 143 ~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k------~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I~~~e~ 216 (335)
T KOG2485|consen 143 EYNVMVVGVPNVGKSSLINALRNVHLRKKK------AARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSIVDVED 216 (335)
T ss_pred ceeEEEEcCCCCChHHHHHHHHHHHhhhcc------ceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCCCCHHH
Confidence 469999999999999999998876543221 22334567999887764444456679999999942 22222333
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHHHHHHH
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALK 169 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~ 169 (662)
.++.| .+.+|-|.--|...+...++..+..
T Consensus 217 ~lKLA-L~g~Vkd~~V~~~~~adylL~~lN~ 246 (335)
T KOG2485|consen 217 GLKLA-LCGLVKDHLVGEETIADYLLYLLNS 246 (335)
T ss_pred hhhhh-hcccccccccCHHHHHHHHHHHHhc
Confidence 33322 2233445444444444444444433
No 459
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.65 E-value=0.0089 Score=62.41 Aligned_cols=82 Identities=27% Similarity=0.423 Sum_probs=59.6
Q ss_pred cceEEEEeeCCCCch--hhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcc
Q 006068 143 VEGAILVVDAGEGPL--AQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYAS 220 (662)
Q Consensus 143 aD~aIlVVDa~~G~~--~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~S 220 (662)
.|-+++|+.+.++.+ .+-.+.+-.+...|+.++|++||+|+.+... ... ++....+..+| ++++.+|
T Consensus 80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~--~~~--~~~~~~y~~~g-------y~v~~~s 148 (301)
T COG1162 80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEE--AAV--KELLREYEDIG-------YPVLFVS 148 (301)
T ss_pred cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchH--HHH--HHHHHHHHhCC-------eeEEEec
Confidence 677888888887654 3344677788889999999999999954322 121 44444555555 5699999
Q ss_pred cccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 221 AKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 221 A~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
+++++ ++++|.+.+.
T Consensus 149 ~~~~~--------------~~~~l~~~l~ 163 (301)
T COG1162 149 AKNGD--------------GLEELAELLA 163 (301)
T ss_pred CcCcc--------------cHHHHHHHhc
Confidence 99998 8888887763
No 460
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=96.56 E-value=0.012 Score=61.07 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=41.9
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHH----HcCCCcE-EEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKAL----KYGLRPI-LLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~----~~~lp~I-vviNKiD~ 183 (662)
.+.+.||||||..... .+..++..+|.+|+++.+..-........++.+. ..+++.+ +|+|++|.
T Consensus 115 ~yD~vIIDt~g~~~~~-~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVCG-GFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCcccc-cchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 5789999999875422 2334588999999999876433333333333322 2356544 78999984
No 461
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=96.56 E-value=0.024 Score=57.79 Aligned_cols=64 Identities=16% Similarity=0.184 Sum_probs=41.5
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHH-HHHHc--CCCcEEEeccCCCC
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLA-KALKY--GLRPILLLNKVDRP 184 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~-~~~~~--~lp~IvviNKiD~~ 184 (662)
+.+.|||||+. +......++..+|.+|+++....-........+. ..... ..+.-+|+|+.|..
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 47999999995 3456678899999999999875322222221222 22212 33456899999863
No 462
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.54 E-value=0.015 Score=63.21 Aligned_cols=123 Identities=23% Similarity=0.275 Sum_probs=67.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCC----------CCCccccccccc-cccccceeEeee-------------EEEE
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA----------DIPHERAMDSIS-LERERGITIASK-------------VTGI 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~----------~~~~~~v~D~~~-~E~ergiTi~~~-------------~~~~ 114 (662)
..-.|.++|--|+||||.+..|...-.. +.+.....|... ...+-++.+... ...+
T Consensus 99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak~al~~a 178 (451)
T COG0541 99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAKAALEKA 178 (451)
T ss_pred CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHHHHHHHH
Confidence 4567999999999999998887654321 111100000000 001112222111 1111
Q ss_pred EecCeeEEEEeCCCCcc----chHHHHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCC
Q 006068 115 SWRENELNMVDTPGHAD----FGGEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~d----F~~ev~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (662)
....+.+.|+||.|-.. ...|....-. ..|=++||+||.-| |+..-...+....+++ =|+++|+|-.
T Consensus 179 k~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDGd 252 (451)
T COG0541 179 KEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDGD 252 (451)
T ss_pred HHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccCC
Confidence 12357899999999432 3444444333 34779999999876 4333333344445665 3889999964
No 463
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=96.52 E-value=0.002 Score=62.97 Aligned_cols=65 Identities=14% Similarity=0.247 Sum_probs=50.5
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC---cEEEeccCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR---PILLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp---~IvviNKiD~~ 184 (662)
.+.+.|||||+..... +..++..+|.+|+++++..-....+..+...+...+.+ .-+|+||++..
T Consensus 94 ~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 94 DYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp TSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred cccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 3899999999876543 77789999999999998754455666677777777743 35899999873
No 464
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.51 E-value=0.015 Score=59.25 Aligned_cols=133 Identities=17% Similarity=0.225 Sum_probs=76.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCcc------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHAD------ 131 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~d------ 131 (662)
.+||..+|..|-|||||++.|.+........+. ...++-..+....+.-. ..+++|+||-|+.|
T Consensus 42 ~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H--------~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~ 113 (406)
T KOG3859|consen 42 CFNILCVGETGLGKSTLMDTLFNTKFESEPSTH--------TLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKED 113 (406)
T ss_pred eEEEEEeccCCccHHHHHHHHhccccCCCCCcc--------CCCCceeecchhhhhhcCeeEEEEEEeecccccccCccc
Confidence 579999999999999999999977543221110 01122222222222111 25799999999765
Q ss_pred -------ch-HHHHHH----------Hh-----hcceEEEEeeC-CCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCC
Q 006068 132 -------FG-GEVERV----------VG-----MVEGAILVVDA-GEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVS 187 (662)
Q Consensus 132 -------F~-~ev~~~----------l~-----~aD~aIlVVDa-~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~ 187 (662)
|. ...+.+ |. ..+++++.|.. .+|....+.-.++.+ ..++.+|-+|-|.|.. .
T Consensus 114 Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~L-dskVNIIPvIAKaDti--s 190 (406)
T KOG3859|consen 114 SYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKL-DSKVNIIPVIAKADTI--S 190 (406)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHH-hhhhhhHHHHHHhhhh--h
Confidence 11 122222 21 24567888874 455555555444444 3467778889999973 3
Q ss_pred HHHHHHHHHHHHHHHH
Q 006068 188 EERCDEVESLVFDLFA 203 (662)
Q Consensus 188 ~~~~~ei~~~v~~l~~ 203 (662)
...+......+..-+.
T Consensus 191 K~eL~~FK~kimsEL~ 206 (406)
T KOG3859|consen 191 KEELKRFKIKIMSELV 206 (406)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 465
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=96.49 E-value=0.031 Score=59.78 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=47.8
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~ 183 (662)
.+.+.|||||+..+ .....++..+|.+|+|++..-.-...+..+++.+...+...-+++|+...
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~~ 267 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPAP 267 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCCC
Confidence 57899999998765 34677899999999999876544556666777776666555567787544
No 466
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=96.48 E-value=0.0023 Score=70.26 Aligned_cols=72 Identities=18% Similarity=0.310 Sum_probs=49.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc--cchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA--DFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~--dF~~ev~ 137 (662)
..+|++||-+|+||||++|+|.+.. ...+.+.+|-|-......+ .-.+.|.||||.. .|.. .
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~K-----------kVsVS~TPGkTKHFQTi~l---s~~v~LCDCPGLVfPSf~~--~ 377 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRK-----------KVSVSSTPGKTKHFQTIFL---SPSVCLCDCPGLVFPSFSP--T 377 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCc-----------eeeeecCCCCcceeEEEEc---CCCceecCCCCccccCCCc--h
Confidence 6899999999999999999999873 3344556676654444333 3578999999954 4532 1
Q ss_pred HHHhhcceEE
Q 006068 138 RVVGMVEGAI 147 (662)
Q Consensus 138 ~~l~~aD~aI 147 (662)
++.-.++|++
T Consensus 378 r~emvl~GiL 387 (562)
T KOG1424|consen 378 RAEMVLNGIL 387 (562)
T ss_pred HHHHHHhcCc
Confidence 3444445544
No 467
>CHL00175 minD septum-site determining protein; Validated
Probab=96.40 E-value=0.024 Score=59.23 Aligned_cols=64 Identities=19% Similarity=0.210 Sum_probs=49.9
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~ 183 (662)
.+.+.|||||+..+ ..+..++..+|.+++|++....-...+..+++.+.+.+.+ .-+++|+++.
T Consensus 126 ~yD~VIiDtpp~~~--~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGID--VGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCCC--HHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 57899999998653 4566788899999999988765566677777777777764 4588999985
No 468
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=96.34 E-value=0.0054 Score=54.95 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=19.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
+|+++|..|+|||+|+.++...
T Consensus 2 kvv~~G~~gvGKt~l~~~~~~~ 23 (124)
T smart00010 2 KVVGIGDSGVGKVGKSARFVQF 23 (124)
T ss_pred EEEEECCCChhHHHHHHHHhcC
Confidence 6899999999999999999654
No 469
>PF14578 GTP_EFTU_D4: Elongation factor Tu domain 4; PDB: 1G7R_A 1G7S_A 1G7T_A 1XE1_A.
Probab=96.30 E-value=0.036 Score=46.52 Aligned_cols=75 Identities=17% Similarity=0.240 Sum_probs=48.7
Q ss_pred CceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--c
Q 006068 262 PFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--A 339 (662)
Q Consensus 262 p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~ 339 (662)
|-.+.|...+.-.... +..|+|..|+|++|..| . +. ...+|.+|.. +.+++++|.+||-||+ .
T Consensus 4 p~ki~Ilp~~vFr~~~-~IvG~V~~G~ik~G~~l---~--G~-----~iG~I~sIe~----~~k~v~~A~~G~eVai~Ie 68 (81)
T PF14578_consen 4 PGKIRILPVCVFRQSD-AIVGEVLEGIIKPGYPL---D--GR-----KIGRIKSIED----NGKNVDEAKKGDEVAISIE 68 (81)
T ss_dssp SEEEEEEEEEEECTCC-EEEEEEEEEEEETT-EE---C--SS-----CEEEEEEEEE----TTEEESEEETT-EEEEEEE
T ss_pred ceEEEECCcCEEecCC-eEEEEEeeeEEeCCCcc---C--CE-----EEEEEEEeEE----CCcCccccCCCCEEEEEEe
Confidence 4455555544444556 88889999999999999 1 11 3556777653 3479999999999987 4
Q ss_pred CcCCCccCceee
Q 006068 340 GMTKPSIGHTVA 351 (662)
Q Consensus 340 gl~~~~~GdTl~ 351 (662)
|..++.-||+|.
T Consensus 69 g~~~i~eGDiLy 80 (81)
T PF14578_consen 69 GPTQIKEGDILY 80 (81)
T ss_dssp T--TB-TT-EEE
T ss_pred CCccCCCCCEEe
Confidence 655777788873
No 470
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=96.29 E-value=0.0043 Score=77.35 Aligned_cols=116 Identities=22% Similarity=0.291 Sum_probs=62.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE-ecCeeEEEEeCCCCc-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-WRENELNMVDTPGHA------- 130 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~-~~~~~iniIDTPGh~------- 130 (662)
..+=..|||.+|+|||||+.+. |...... +.......+|+. ....|. |-...-.+|||+|.-
T Consensus 110 ~LPWYlviG~~gsGKtt~l~~s----gl~~pl~---~~~~~~~~~~~~---~t~~c~wwf~~~avliDtaG~y~~~~~~~ 179 (1169)
T TIGR03348 110 DLPWYLVIGPPGSGKTTLLQNS----GLKFPLA---ERLGAAALRGVG---GTRNCDWWFTDEAVLIDTAGRYTTQDSDP 179 (1169)
T ss_pred cCCCEEEECCCCCchhHHHHhC----CCCCcCc---hhhccccccCCC---CCcccceEecCCEEEEcCCCccccCCCcc
Confidence 3567899999999999998765 2211100 100001111111 001122 233567799999921
Q ss_pred -cchHHHHHHH---------hhcceEEEEeeCCCCch---hh-------HHHHHHHH---HHcCCCcEEEeccCCCC
Q 006068 131 -DFGGEVERVV---------GMVEGAILVVDAGEGPL---AQ-------TKFVLAKA---LKYGLRPILLLNKVDRP 184 (662)
Q Consensus 131 -dF~~ev~~~l---------~~aD~aIlVVDa~~G~~---~q-------t~~~l~~~---~~~~lp~IvviNKiD~~ 184 (662)
.-..++...+ +-.||+|++||+.+=.. .+ .+.-+..+ ....+|+-|+++|||+.
T Consensus 180 ~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 180 EEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLL 256 (1169)
T ss_pred cccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhh
Confidence 1122333332 34799999999865322 11 11111212 22367999999999985
No 471
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=96.29 E-value=0.014 Score=60.24 Aligned_cols=142 Identities=18% Similarity=0.195 Sum_probs=74.2
Q ss_pred CCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC---cccccccccccccc------c------eeEeeeEEEEEec--
Q 006068 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---HERAMDSISLERER------G------ITIASKVTGISWR-- 117 (662)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---~~~v~D~~~~E~er------g------iTi~~~~~~~~~~-- 117 (662)
....+++--.|.|.-|+|||||++.++...+.... .+-+-|+...|+.- | .-.......+..+
T Consensus 52 ~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtVk~~ 131 (391)
T KOG2743|consen 52 SLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTVKDN 131 (391)
T ss_pred CCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEecch
Confidence 34456888889999999999999999976542110 01111222221111 1 0011112222221
Q ss_pred -------------CeeEEEEeCCCCccchHHHH-----HHH---hhcceEEEEeeCCCCchhhHH----HHHHHHH-HcC
Q 006068 118 -------------ENELNMVDTPGHADFGGEVE-----RVV---GMVEGAILVVDAGEGPLAQTK----FVLAKAL-KYG 171 (662)
Q Consensus 118 -------------~~~iniIDTPGh~dF~~ev~-----~~l---~~aD~aIlVVDa~~G~~~qt~----~~l~~~~-~~~ 171 (662)
.....++.|-|.++=..-.. ..+ -..||+|-||||.+...--+. -+|..|- +.-
T Consensus 132 gvraie~lvqkkGkfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA 211 (391)
T KOG2743|consen 132 GVRAIENLVQKKGKFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA 211 (391)
T ss_pred HHHHHHHHHhcCCCcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh
Confidence 35688999999988322111 111 236999999999754321111 1222221 112
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHHHH
Q 006068 172 LRPILLLNKVDRPAVSEERCDEVESLV 198 (662)
Q Consensus 172 lp~IvviNKiD~~~~~~~~~~ei~~~v 198 (662)
..--+++||.|+.. .+.+.++.+.+
T Consensus 212 ~AD~II~NKtDli~--~e~~~~l~q~I 236 (391)
T KOG2743|consen 212 LADRIIMNKTDLVS--EEEVKKLRQRI 236 (391)
T ss_pred hhheeeeccccccC--HHHHHHHHHHH
Confidence 22357899999954 34444444444
No 472
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=96.27 E-value=0.017 Score=59.95 Aligned_cols=65 Identities=14% Similarity=0.214 Sum_probs=40.9
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHH----HcCCCcE-EEeccCC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKAL----KYGLRPI-LLLNKVD 182 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~----~~~lp~I-vviNKiD 182 (662)
+++.+.||||||..... .+..++..||.+|+++.+..-........++.+. ..+++++ +++|+.+
T Consensus 116 ~~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 116 DDYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred ccCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 35889999999865322 1344578899999999765432323333333222 3456654 7899977
No 473
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.26 E-value=0.017 Score=61.63 Aligned_cols=122 Identities=20% Similarity=0.222 Sum_probs=69.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC----------Ccccccccccc-ccccceeEeeeEEEEE------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISL-ERERGITIASKVTGIS------------ 115 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~-E~ergiTi~~~~~~~~------------ 115 (662)
+.-.|.++|--|+||||.+-.|.+...... ...-..|...+ ...-++.++.+++..+
T Consensus 100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f 179 (483)
T KOG0780|consen 100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF 179 (483)
T ss_pred CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence 345788999999999999998886533111 11112233322 2223555555444332
Q ss_pred -ecCeeEEEEeCCCCcc----chHHHHHHHhh--cceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCC
Q 006068 116 -WRENELNMVDTPGHAD----FGGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDR 183 (662)
Q Consensus 116 -~~~~~iniIDTPGh~d----F~~ev~~~l~~--aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~ 183 (662)
-+++.+.|+||.|... +..|.....+. .|-+|+|+||.-|- ..+-...+....+-+ -++++|+|-
T Consensus 180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQ---aae~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQ---AAEAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccH---hHHHHHHHHHHhhccceEEEEeccc
Confidence 2478999999999332 22333333322 58899999998763 222222222222222 367889885
No 474
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=96.18 E-value=0.0075 Score=58.52 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=33.3
Q ss_pred ceEEEEeeCCCCchhhHHHHHHH--HHHcCCCcEEEeccCCCC
Q 006068 144 EGAILVVDAGEGPLAQTKFVLAK--ALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 144 D~aIlVVDa~~G~~~qt~~~l~~--~~~~~lp~IvviNKiD~~ 184 (662)
|.+++|+||..........+.+. +...+.|.|+|+||+|+.
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~ 43 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLV 43 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcC
Confidence 78999999998877766666666 344578999999999993
No 475
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=96.17 E-value=0.022 Score=60.04 Aligned_cols=65 Identities=20% Similarity=0.268 Sum_probs=40.8
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc----CCCcE-EEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY----GLRPI-LLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~----~lp~I-vviNKiD~ 183 (662)
++.+.||||||.... .....++..||.+|+++++..-.......+++.+... +++.. +++|+.|.
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 578999999987432 2233467889999999987543333333343333322 34443 88899883
No 476
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.057 Score=56.80 Aligned_cols=132 Identities=17% Similarity=0.161 Sum_probs=67.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccc-ccccccccc------ceeEeeeEEEEEecC----------eeE
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM-DSISLERER------GITIASKVTGISWRE----------NEL 121 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~-D~~~~E~er------giTi~~~~~~~~~~~----------~~i 121 (662)
+.-.|+++|.-|+|||||++-|...+-...+.+.+. -..++..|+ +|.+.....++-+-+ ...
T Consensus 187 df~VIgvlG~QgsGKStllslLaans~~~dyr~yvFRpvS~Ea~E~~~~qt~~Id~~i~q~~i~fldtqpl~sfsi~e~~ 266 (491)
T KOG4181|consen 187 DFTVIGVLGGQGSGKSTLLSLLAANSLDYDYRQYVFRPVSPEADECIFAQTHKIDPNIGQKSILFLDTQPLQSFSIRERH 266 (491)
T ss_pred CeeEEEeecCCCccHHHHHHHHhccChHHhhHHHhcccCChhhhhhhccceeccccccccceEEeeccccccchHHHhhh
Confidence 355789999999999999998876643222222221 011222222 222222221111110 123
Q ss_pred EEEeCCCCc---------cc--hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc----------------CCCc
Q 006068 122 NMVDTPGHA---------DF--GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY----------------GLRP 174 (662)
Q Consensus 122 niIDTPGh~---------dF--~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~----------------~lp~ 174 (662)
.+.|+|-.. +. .+.+.-.+..|+.+|+|+|.-.. .+....++.|... ..|.
T Consensus 267 i~~d~p~~~~~~~d~~~~~~~sL~~~AfLl~VcHivivV~d~~~d--~~lir~L~~Ae~~rP~laifrh~~~~~r~~~p~ 344 (491)
T KOG4181|consen 267 ILLDTPPLMPVGKDSDHQDLYSLGTMAFLLSVCHIVIVVIDGLAD--EQLIRLLNAAERLRPTLAIFRHCKGYVRDHMPQ 344 (491)
T ss_pred hccCCCCCCCCCCCchHHHHHHHHHHHHHHHHhhEEEEEecchhH--HHHHHHHHHHHhhCcccCccccccccccccCcc
Confidence 345665321 11 12333456789999999986431 2333444444443 2455
Q ss_pred EE-EeccCCCCCCCHHHHH
Q 006068 175 IL-LLNKVDRPAVSEERCD 192 (662)
Q Consensus 175 Iv-viNKiD~~~~~~~~~~ 192 (662)
+| +-||.-+.+..+.+.+
T Consensus 345 lVFv~~KA~riDf~pr~re 363 (491)
T KOG4181|consen 345 LVFVRAKAHRIDFEPRQRE 363 (491)
T ss_pred eEEEeccccccccChHHHH
Confidence 54 5599888766664433
No 477
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=96.12 E-value=0.027 Score=58.36 Aligned_cols=63 Identities=19% Similarity=0.183 Sum_probs=35.1
Q ss_pred CeeEEEEeCCCCccchHH-HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHH----HcCCCcE-EEecc
Q 006068 118 ENELNMVDTPGHADFGGE-VERVVGMVEGAILVVDAGEGPLAQTKFVLAKAL----KYGLRPI-LLLNK 180 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~e-v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~----~~~lp~I-vviNK 180 (662)
++.+.||||||+....+. ...++..+|.+|+++.+..-.......+++.+. ..+.++. |+.|+
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl~~~~~l~~~i~~~~~~~~~~l~gVv~n~ 184 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 184 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCchHHHHHHHHHHHHHHHhCccCCCceEEEEEec
Confidence 689999999987532111 112234799999999875432222222332222 2356665 44465
No 478
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=96.12 E-value=0.11 Score=53.79 Aligned_cols=69 Identities=16% Similarity=0.178 Sum_probs=49.0
Q ss_pred cCeeEEEEeCCCCcc---ch---HH---HHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCC
Q 006068 117 RENELNMVDTPGHAD---FG---GE---VERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (662)
Q Consensus 117 ~~~~iniIDTPGh~d---F~---~e---v~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (662)
..+.+.|+|||.-.. +. .. +...+. ..+++++|+....-...++...+..+...++++ -+|+||+...
T Consensus 123 ~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 123 AEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 368999999996322 11 11 111222 245889999888777788999999999999997 5899999864
Q ss_pred C
Q 006068 185 A 185 (662)
Q Consensus 185 ~ 185 (662)
.
T Consensus 203 ~ 203 (254)
T cd00550 203 D 203 (254)
T ss_pred c
Confidence 3
No 479
>PRK10818 cell division inhibitor MinD; Provisional
Probab=96.02 E-value=0.042 Score=57.04 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=46.1
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc---------CCCcEEEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY---------GLRPILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~---------~lp~IvviNKiD~ 183 (662)
.+.+.|+|||+.... ....++..+|.+|+++++.......+..+++.+... +++..+++|++|.
T Consensus 113 ~yd~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 113 DFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred CCCEEEEeCCCCccH--HHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 589999999987643 456678999999999998765555555555554421 1234688999986
No 480
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.99 E-value=0.064 Score=53.95 Aligned_cols=68 Identities=19% Similarity=0.172 Sum_probs=51.4
Q ss_pred eeEEEEeCCCCccchH-HHHHHHhh--cceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCC
Q 006068 119 NELNMVDTPGHADFGG-EVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAV 186 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~-ev~~~l~~--aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~ 186 (662)
+.+.|+|||-...... .+...+.. +|.+++|+........++...++.+...+.+. -+|+|++.....
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~~~ 185 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPAEV 185 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCccc
Confidence 8999999997533222 12233333 48999999998888889999999999999885 588999986533
No 481
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.95 E-value=0.008 Score=60.01 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=41.5
Q ss_pred CeeEEEEeCCCCccc------hHHHHHHHhhcceE---EEEeeCCCCchh-----hHHHHHHHHHHcCCCcEEEeccCCC
Q 006068 118 ENELNMVDTPGHADF------GGEVERVVGMVEGA---ILVVDAGEGPLA-----QTKFVLAKALKYGLRPILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF------~~ev~~~l~~aD~a---IlVVDa~~G~~~-----qt~~~l~~~~~~~lp~IvviNKiD~ 183 (662)
..++.++|+||+.+| ...+.+.+...|.- +=++|+.--..+ .-.-.+.-+..+.+|.|=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 467999999998764 24555666666654 444554211111 1112234445678999999999998
Q ss_pred C
Q 006068 184 P 184 (662)
Q Consensus 184 ~ 184 (662)
.
T Consensus 176 ~ 176 (290)
T KOG1533|consen 176 L 176 (290)
T ss_pred H
Confidence 4
No 482
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=95.88 E-value=0.045 Score=58.57 Aligned_cols=82 Identities=18% Similarity=0.111 Sum_probs=61.8
Q ss_pred ccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCch-----------hhHHHHHHHHHHc
Q 006068 102 ERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-----------AQTKFVLAKALKY 170 (662)
Q Consensus 102 ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~-----------~qt~~~l~~~~~~ 170 (662)
.|--|.......|.+++.++-++|.+||..=...+......++++|+|++-.+--+ .++..+++.....
T Consensus 178 ~R~~T~GI~e~~F~~k~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~ 257 (354)
T KOG0082|consen 178 SRVPTTGIVEVEFTIKGLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNN 257 (354)
T ss_pred hccCcCCeeEEEEEeCCCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcC
Confidence 34556667788899999999999999998777777888889999999998654221 2333444444332
Q ss_pred ----CCCcEEEeccCCC
Q 006068 171 ----GLRPILLLNKVDR 183 (662)
Q Consensus 171 ----~lp~IvviNKiD~ 183 (662)
+.++|+|+||.|+
T Consensus 258 ~~F~~tsiiLFLNK~DL 274 (354)
T KOG0082|consen 258 KWFANTSIILFLNKKDL 274 (354)
T ss_pred cccccCcEEEEeecHHH
Confidence 5689999999998
No 483
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.87 E-value=0.024 Score=54.91 Aligned_cols=25 Identities=32% Similarity=0.462 Sum_probs=22.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
+.+-++|+|..|+|||||+++|+..
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~ 29 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPA 29 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHH
Confidence 3457999999999999999999966
No 484
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=95.84 E-value=0.033 Score=57.81 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=40.4
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH----cCCCc-EEEeccCCC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK----YGLRP-ILLLNKVDR 183 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~----~~lp~-IvviNKiD~ 183 (662)
+.+.+.||||||...-. ....++..+|.+|+++...--....+..+++.+.+ .+++. -+|+|++|.
T Consensus 114 ~~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 114 DDYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred ccCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 36899999999864311 11235789999999987643222333333333322 35554 378899985
No 485
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.77 E-value=0.069 Score=56.41 Aligned_cols=120 Identities=21% Similarity=0.371 Sum_probs=66.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCC------cccc----cccccc-ccccceeEeee-----EEEEEe------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP------HERA----MDSISL-ERERGITIASK-----VTGISW------ 116 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~------~~~v----~D~~~~-E~ergiTi~~~-----~~~~~~------ 116 (662)
+...|.++|-.|+||||-+..|.+....... ..|+ .+.... ...-|+.+-.. .+++-|
T Consensus 138 ~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~A 217 (340)
T COG0552 138 KPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQAA 217 (340)
T ss_pred CcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHHH
Confidence 4678999999999999998888765321110 0000 000000 01112222221 111112
Q ss_pred --cCeeEEEEeCCC--C--ccchHHHHHHHhhc---ce-----EEEEeeCCCCchhhHHHHHHHHHHcC--CCc-EEEec
Q 006068 117 --RENELNMVDTPG--H--ADFGGEVERVVGMV---EG-----AILVVDAGEGPLAQTKFVLAKALKYG--LRP-ILLLN 179 (662)
Q Consensus 117 --~~~~iniIDTPG--h--~dF~~ev~~~l~~a---D~-----aIlVVDa~~G~~~qt~~~l~~~~~~~--lp~-IvviN 179 (662)
+++.+.|+||.| | .++..|.....+.+ +. +++|+||.-|-.. +.+++.++ +++ =++++
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna-----l~QAk~F~eav~l~GiIlT 292 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA-----LSQAKIFNEAVGLDGIILT 292 (340)
T ss_pred HHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH-----HHHHHHHHHhcCCceEEEE
Confidence 378999999999 3 34566666555543 44 7888899887321 23333322 232 47899
Q ss_pred cCCC
Q 006068 180 KVDR 183 (662)
Q Consensus 180 KiD~ 183 (662)
|+|-
T Consensus 293 KlDg 296 (340)
T COG0552 293 KLDG 296 (340)
T ss_pred eccc
Confidence 9994
No 486
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=95.77 E-value=0.049 Score=56.94 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=26.0
Q ss_pred cCeeEEEEeCCCCccchH-HHHHHHhhcceEEEEeeCCCC
Q 006068 117 RENELNMVDTPGHADFGG-EVERVVGMVEGAILVVDAGEG 155 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~-ev~~~l~~aD~aIlVVDa~~G 155 (662)
.++.+.||||||..-... ....++..+|.+|+++.+..-
T Consensus 115 ~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~ 154 (279)
T PRK13230 115 LGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPM 154 (279)
T ss_pred cCCCEEEEecCCccccCCccccccccccceEEEeccchHH
Confidence 368999999998542111 112245669999999987643
No 487
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.04 Score=56.49 Aligned_cols=23 Identities=30% Similarity=0.393 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
--++|+|+.|+|||||+..+++-
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGl 53 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGL 53 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999983
No 488
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=95.70 E-value=0.068 Score=54.91 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHh
Q 006068 63 VAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 63 IaIiGh~~~GKTTLv~~Ll~~ 83 (662)
|.++|.+|+||||+...|...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999999865
No 489
>PRK01889 GTPase RsgA; Reviewed
Probab=95.67 E-value=0.013 Score=63.69 Aligned_cols=65 Identities=22% Similarity=0.299 Sum_probs=38.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF 132 (662)
..++|+|.+|+|||||++.|+........ .+.. ...+.+..|.......+.. ...++||||...|
T Consensus 196 ~~~~lvG~sgvGKStLin~L~g~~~~~~G--~i~~--~~~~g~~tt~~~~l~~l~~---~~~l~DtpG~~~~ 260 (356)
T PRK01889 196 KTVALLGSSGVGKSTLVNALLGEEVQKTG--AVRE--DDSKGRHTTTHRELHPLPS---GGLLIDTPGMREL 260 (356)
T ss_pred CEEEEECCCCccHHHHHHHHHHhccccee--eEEE--CCCCCcchhhhccEEEecC---CCeecCCCchhhh
Confidence 47999999999999999999976432111 1100 0011122333333333321 2468899998765
No 490
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=95.52 E-value=0.07 Score=55.57 Aligned_cols=67 Identities=13% Similarity=0.056 Sum_probs=39.0
Q ss_pred ecCeeEEEEeCCCCccch-HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH---cCCCcE-EEeccCC
Q 006068 116 WRENELNMVDTPGHADFG-GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK---YGLRPI-LLLNKVD 182 (662)
Q Consensus 116 ~~~~~iniIDTPGh~dF~-~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~---~~lp~I-vviNKiD 182 (662)
++++.+.||||||..-.. -....++..+|.+|+++....-.......+++.+.. .++++. +++|+.+
T Consensus 114 ~~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 114 TDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 456899999999864211 011112457899999988643222222234343433 356664 7889765
No 491
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.48 E-value=0.029 Score=60.55 Aligned_cols=29 Identities=38% Similarity=0.471 Sum_probs=24.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGA 86 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (662)
.....++|+|++|+|||||+.-|++....
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN~~l~ 99 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLANKLLA 99 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHHHHhh
Confidence 34568999999999999999888887654
No 492
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=95.35 E-value=0.065 Score=55.85 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=35.8
Q ss_pred CeeEEEEeCCCCccchHH-HHHHHhhcceEEEEeeCCCCchhhHHHHHH---HHH-HcCCCcE-EEecc
Q 006068 118 ENELNMVDTPGHADFGGE-VERVVGMVEGAILVVDAGEGPLAQTKFVLA---KAL-KYGLRPI-LLLNK 180 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~e-v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~---~~~-~~~lp~I-vviNK 180 (662)
.+.+.||||||....... ...++..+|.+|+++.+..-.......+++ .+. ..++++. ++.|+
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~giv~n~ 183 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALYAANNICKGILKYAKSGGVRLGGLICNS 183 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEcC
Confidence 579999999986522111 112245789999999876543333333333 222 2355654 45565
No 493
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=95.28 E-value=0.18 Score=56.55 Aligned_cols=115 Identities=18% Similarity=0.167 Sum_probs=65.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC-ccchHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH-ADFGGEVE 137 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh-~dF~~ev~ 137 (662)
+..+.-++|.-++|||.|++++++..... .+........++...... .....+.+-|.+-. .+|..+-+
T Consensus 424 ~Vf~C~V~G~k~~GKs~lL~sflgr~~~~--------~~~~~~~~~~avn~v~~~--g~~k~LiL~ei~~~~~~~l~~ke 493 (625)
T KOG1707|consen 424 KVFQCFVVGPKNCGKSALLQSFLGRSMSD--------NNTGTTKPRYAVNSVEVK--GQQKYLILREIGEDDQDFLTSKE 493 (625)
T ss_pred eeeeEEEEcCCcCchHHHHHHHhcccccc--------ccccCCCCceeeeeeeec--cccceEEEeecCccccccccCcc
Confidence 46678899999999999999999874321 111111112222222211 22234445555432 23333323
Q ss_pred HHHhhcceEEEEeeCCCCchhh-HHHHHHHH-HHcCCCcEEEeccCCCCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQ-TKFVLAKA-LKYGLRPILLLNKVDRPAV 186 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~-~~~~lp~IvviNKiD~~~~ 186 (662)
..||.+++++|........ -..+.++. ...++|+++|..|+|+...
T Consensus 494 ---~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~ 541 (625)
T KOG1707|consen 494 ---AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEV 541 (625)
T ss_pred ---ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchh
Confidence 6799999999987533222 22222222 1258899999999999543
No 494
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.26 E-value=0.015 Score=62.28 Aligned_cols=57 Identities=19% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG 128 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPG 128 (662)
.+...++|+|-+++||||++|+|... -.-......|+|.......+ +..|.|+|.||
T Consensus 250 k~sIrvGViG~PNVGKSSvINsL~~~-----------k~C~vg~~pGvT~smqeV~L---dk~i~llDsPg 306 (435)
T KOG2484|consen 250 KTSIRVGIIGYPNVGKSSVINSLKRR-----------KACNVGNVPGVTRSMQEVKL---DKKIRLLDSPG 306 (435)
T ss_pred CcceEeeeecCCCCChhHHHHHHHHh-----------ccccCCCCccchhhhhheec---cCCceeccCCc
No 495
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.22 E-value=0.085 Score=55.31 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=26.7
Q ss_pred CCCCCCccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+...+.+|+.|+|.+|-|||++++++....
T Consensus 55 ~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~h 85 (302)
T PF05621_consen 55 YPKRHRMPNLLIVGDSNNGKTMIIERFRRLH 85 (302)
T ss_pred CCcccCCCceEEecCCCCcHHHHHHHHHHHC
Confidence 3455678899999999999999999999873
No 496
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.16 E-value=0.022 Score=54.46 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
+.|+|+|..|+|||||+++|...
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~ 24 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPA 24 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999976
No 497
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.04 E-value=0.024 Score=45.14 Aligned_cols=22 Identities=23% Similarity=0.311 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..+|.|+.|+|||||++++..-
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999865
No 498
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=94.95 E-value=0.14 Score=53.49 Aligned_cols=102 Identities=16% Similarity=0.158 Sum_probs=52.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeE-EEEEecCeeEEEEeCCC----CccchHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKV-TGISWRENELNMVDTPG----HADFGGEV 136 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~-~~~~~~~~~iniIDTPG----h~dF~~ev 136 (662)
=|+|+|.+++||||++..|....-. .+..+.... ..+.+.... ..|.-. ...+..++
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~----------------~~~~v~~i~~~~~~~~~~~--y~~~~~Ek~~R~~l~s~v 64 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEE----------------KGKEVVIISDDSLGIDRND--YADSKKEKEARGSLKSAV 64 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHH----------------TT--EEEE-THHHH-TTSS--S--GGGHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHh----------------cCCEEEEEcccccccchhh--hhchhhhHHHHHHHHHHH
Confidence 4899999999999999999875110 011000000 000000000 011111 01234566
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDR 183 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~ 183 (662)
.+.++.- -|+++|...-....=.+++..|+..+.++.++--+++.
T Consensus 65 ~r~ls~~--~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~ 109 (270)
T PF08433_consen 65 ERALSKD--TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPL 109 (270)
T ss_dssp HHHHTT---SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--H
T ss_pred HHhhccC--eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCH
Confidence 6666553 56678998888888889999999999999887777764
No 499
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.92 E-value=0.038 Score=53.92 Aligned_cols=105 Identities=14% Similarity=0.184 Sum_probs=56.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc---chHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD---FGGEVER 138 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d---F~~ev~~ 138 (662)
+|.|+|++|+||||+...|....+......- |....+...+..... ..=.++|-....+ ..+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstg--d~~r~~~~~~t~lg~---------~~k~~i~~g~lv~d~i~~~~v~~ 70 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTG--DILRAAIAERTELGE---------EIKKYIDKGELVPDEIVNGLVKE 70 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHh--HHhHhhhccCChHHH---------HHHHHHHcCCccchHHHHHHHHH
Confidence 7999999999999999999988543211100 010010000100000 0001344444221 1244455
Q ss_pred HHhhcceE-EEEeeCCCCchhhHHHHHHHHHHcCCCcEEE
Q 006068 139 VVGMVEGA-ILVVDAGEGPLAQTKFVLAKALKYGLRPILL 177 (662)
Q Consensus 139 ~l~~aD~a-IlVVDa~~G~~~qt~~~l~~~~~~~lp~Ivv 177 (662)
.+..+|+. .+++|..-....|.+.+-+.+.++|.+.-.+
T Consensus 71 rl~~~d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v 110 (178)
T COG0563 71 RLDEADCKAGFILDGFPRTLCQARALKRLLKELGVRLDMV 110 (178)
T ss_pred HHHhhcccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceE
Confidence 56666633 5777777667777777777777777554333
No 500
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=94.91 E-value=0.31 Score=48.55 Aligned_cols=57 Identities=25% Similarity=0.373 Sum_probs=41.2
Q ss_pred eEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEec
Q 006068 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLN 179 (662)
Q Consensus 120 ~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviN 179 (662)
.+.|||||.-.+. ......+..+|.+|+|+.+..-........++.++ +.+++ +|+|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 6899999976653 34444567899999999988776777777777776 55655 5555
Done!