Query 006068
Match_columns 662
No_of_seqs 594 out of 4356
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 15:05:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006068.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006068hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e3x_A BIPA; MCSG,PSI2, struct 100.0 1E-108 5E-113 857.0 25.3 322 337-661 2-332 (332)
2 4fn5_A EF-G 1, elongation fact 100.0 4.5E-88 1.6E-92 787.3 36.5 445 57-537 10-701 (709)
3 3j25_A Tetracycline resistance 100.0 3.5E-89 1.2E-93 786.9 10.5 442 59-538 1-618 (638)
4 2rdo_7 EF-G, elongation factor 100.0 6.8E-81 2.3E-85 724.3 48.5 446 56-537 6-695 (704)
5 2xex_A Elongation factor G; GT 100.0 9.9E-81 3.4E-85 722.3 44.0 445 56-536 6-682 (693)
6 2ywe_A GTP-binding protein LEP 100.0 2.7E-80 9.3E-85 702.0 42.0 445 58-546 4-498 (600)
7 1dar_A EF-G, elongation factor 100.0 1E-80 3.5E-85 721.9 36.4 444 57-536 9-683 (691)
8 3cb4_D GTP-binding protein LEP 100.0 3.1E-79 1.1E-83 694.7 43.9 446 58-547 2-494 (599)
9 2dy1_A Elongation factor G; tr 100.0 5.7E-77 2E-81 688.3 38.9 443 56-537 5-654 (665)
10 1n0u_A EF-2, elongation factor 100.0 9.6E-75 3.3E-79 684.6 40.4 469 58-538 17-810 (842)
11 3vqt_A RF-3, peptide chain rel 100.0 1.1E-72 3.6E-77 637.8 33.1 362 58-452 29-495 (548)
12 2h5e_A Peptide chain release f 100.0 2.6E-60 9E-65 534.6 34.1 361 59-454 12-475 (529)
13 3tr5_A RF-3, peptide chain rel 100.0 1.1E-60 3.7E-65 537.1 30.5 362 58-454 11-474 (528)
14 3j2k_7 ERF3, eukaryotic polype 100.0 1.4E-39 4.7E-44 359.2 29.0 282 58-356 15-329 (439)
15 2c78_A Elongation factor TU-A; 100.0 4.1E-39 1.4E-43 352.3 27.8 285 59-354 10-308 (405)
16 1d2e_A Elongation factor TU (E 100.0 3E-39 1E-43 352.4 26.6 278 60-354 3-290 (397)
17 1jny_A EF-1-alpha, elongation 100.0 6.9E-39 2.4E-43 353.6 25.8 283 58-356 4-319 (435)
18 3p26_A Elongation factor 1 alp 100.0 4E-38 1.4E-42 352.0 26.9 288 59-355 32-363 (483)
19 1r5b_A Eukaryotic peptide chai 100.0 1.4E-38 4.8E-43 353.8 21.1 284 58-355 41-357 (467)
20 3mca_A HBS1, elongation factor 100.0 8.4E-39 2.9E-43 364.5 16.8 283 58-355 175-490 (592)
21 1zun_B Sulfate adenylate trans 100.0 2.4E-37 8.2E-42 341.2 27.2 281 58-355 22-327 (434)
22 1f60_A Elongation factor EEF1A 100.0 5.3E-37 1.8E-41 340.3 26.0 283 59-355 6-329 (458)
23 3izq_1 HBS1P, elongation facto 100.0 2.7E-37 9.1E-42 353.1 23.5 289 58-355 165-497 (611)
24 3avx_A Elongation factor TS, e 100.0 1E-36 3.6E-41 358.9 27.5 280 58-355 294-582 (1289)
25 2elf_A Protein translation elo 100.0 1.2E-36 4.3E-41 328.1 21.1 238 62-352 23-275 (370)
26 1g7s_A Translation initiation 100.0 6.7E-37 2.3E-41 347.9 19.3 302 59-400 4-373 (594)
27 1kk1_A EIF2gamma; initiation o 100.0 8.7E-36 3E-40 326.5 27.3 265 58-355 8-317 (410)
28 1s0u_A EIF-2-gamma, translatio 100.0 5.2E-35 1.8E-39 320.1 23.9 265 58-355 6-315 (408)
29 1wb1_A Translation elongation 100.0 9E-36 3.1E-40 332.2 15.9 256 60-351 19-281 (482)
30 3sjy_A Translation initiation 100.0 1.2E-33 4.1E-38 308.8 27.1 274 58-355 6-309 (403)
31 1zo1_I IF2, translation initia 100.0 1.6E-35 5.6E-40 329.0 9.4 252 59-355 3-259 (501)
32 3izy_P Translation initiation 100.0 2.2E-35 7.4E-40 330.6 2.6 255 59-356 3-261 (537)
33 3qq5_A Small GTP-binding prote 99.9 9.9E-22 3.4E-26 214.6 11.0 185 54-278 28-227 (423)
34 2lkc_A Translation initiation 99.8 5.2E-21 1.8E-25 182.8 10.4 161 59-252 7-169 (178)
35 4dhe_A Probable GTP-binding pr 99.8 1.2E-20 4.1E-25 187.7 13.1 174 56-258 25-215 (223)
36 2dyk_A GTP-binding protein; GT 99.8 4.5E-20 1.5E-24 173.0 14.4 154 60-253 1-161 (161)
37 2hjg_A GTP-binding protein ENG 99.8 2.5E-20 8.4E-25 205.5 13.3 163 58-251 173-346 (436)
38 3iev_A GTP-binding protein ERA 99.8 9.4E-20 3.2E-24 191.7 16.1 163 59-255 9-183 (308)
39 1wf3_A GTP-binding protein; GT 99.8 6.5E-20 2.2E-24 192.2 14.5 158 59-254 6-173 (301)
40 3t1o_A Gliding protein MGLA; G 99.8 7.3E-20 2.5E-24 177.4 12.8 168 58-252 12-190 (198)
41 2efe_B Small GTP-binding prote 99.8 2.4E-19 8.3E-24 171.5 15.8 162 59-255 11-176 (181)
42 3pqc_A Probable GTP-binding pr 99.8 4.2E-19 1.4E-23 171.8 17.4 164 54-253 17-193 (195)
43 1svi_A GTP-binding protein YSX 99.8 4E-19 1.4E-23 172.5 15.7 163 56-253 19-194 (195)
44 4dcu_A GTP-binding protein ENG 99.8 1.8E-19 6.2E-24 199.6 14.5 164 58-252 193-367 (456)
45 1z0f_A RAB14, member RAS oncog 99.8 3.8E-19 1.3E-23 169.5 14.5 160 58-252 13-176 (179)
46 1r2q_A RAS-related protein RAB 99.8 5E-19 1.7E-23 167.0 15.0 160 60-254 6-169 (170)
47 2fg5_A RAB-22B, RAS-related pr 99.8 3.5E-19 1.2E-23 173.3 14.2 163 58-255 21-187 (192)
48 4bas_A ADP-ribosylation factor 99.8 2.8E-19 9.5E-24 174.0 13.4 161 57-253 14-188 (199)
49 1ega_A Protein (GTP-binding pr 99.8 2.1E-19 7.2E-24 188.4 12.8 160 59-254 7-175 (301)
50 1zj6_A ADP-ribosylation factor 99.8 8.8E-19 3E-23 169.4 16.0 162 59-257 15-181 (187)
51 3tkl_A RAS-related protein RAB 99.8 6.8E-19 2.3E-23 170.9 15.0 159 58-253 14-178 (196)
52 1zd9_A ADP-ribosylation factor 99.8 1.1E-18 3.6E-23 169.3 16.2 160 59-254 21-185 (188)
53 3iby_A Ferrous iron transport 99.8 2.9E-19 9.9E-24 183.0 12.2 151 61-251 2-164 (256)
54 2y8e_A RAB-protein 6, GH09086P 99.8 9.1E-19 3.1E-23 166.8 14.7 158 60-254 14-177 (179)
55 1z0j_A RAB-22, RAS-related pro 99.8 9.7E-19 3.3E-23 165.2 14.7 161 59-254 5-169 (170)
56 2gf9_A RAS-related protein RAB 99.8 5E-19 1.7E-23 171.4 12.9 162 57-253 19-184 (189)
57 3i8s_A Ferrous iron transport 99.8 3.2E-19 1.1E-23 184.5 12.1 156 60-255 3-170 (274)
58 2hup_A RAS-related protein RAB 99.8 1E-18 3.5E-23 171.6 14.9 160 58-253 27-192 (201)
59 2hxs_A RAB-26, RAS-related pro 99.8 7.4E-19 2.5E-23 167.7 13.4 159 59-254 5-173 (178)
60 1ek0_A Protein (GTP-binding pr 99.8 1.9E-18 6.6E-23 162.9 16.0 161 61-253 4-168 (170)
61 3bc1_A RAS-related protein RAB 99.8 1.3E-18 4.3E-23 168.0 15.0 161 56-252 7-183 (195)
62 3tw8_B RAS-related protein RAB 99.8 3.1E-19 1E-23 170.4 10.5 159 58-253 7-170 (181)
63 3clv_A RAB5 protein, putative; 99.8 1.7E-18 5.8E-23 168.2 15.8 157 58-252 5-202 (208)
64 2h17_A ADP-ribosylation factor 99.8 7.8E-19 2.7E-23 169.0 13.2 156 59-251 20-180 (181)
65 1zbd_A Rabphilin-3A; G protein 99.8 1.4E-18 4.8E-23 170.1 15.1 159 59-252 7-169 (203)
66 2atx_A Small GTP binding prote 99.8 7.8E-19 2.7E-23 170.7 13.1 166 55-254 13-193 (194)
67 1r8s_A ADP-ribosylation factor 99.8 5.6E-18 1.9E-22 159.3 18.3 155 62-253 2-161 (164)
68 2g6b_A RAS-related protein RAB 99.8 1.6E-18 5.4E-23 165.7 14.6 160 58-253 8-173 (180)
69 2erx_A GTP-binding protein DI- 99.8 2.3E-18 7.9E-23 162.7 15.6 160 60-255 3-168 (172)
70 2p5s_A RAS and EF-hand domain 99.8 1.3E-18 4.3E-23 170.3 14.1 167 56-253 24-196 (199)
71 2wji_A Ferrous iron transport 99.8 1.2E-18 4.1E-23 165.4 13.4 153 60-252 3-163 (165)
72 2oil_A CATX-8, RAS-related pro 99.8 9.7E-19 3.3E-23 169.8 12.9 161 57-252 22-186 (193)
73 3kkq_A RAS-related protein M-R 99.8 2.4E-18 8.2E-23 165.3 15.2 158 59-252 17-180 (183)
74 3dz8_A RAS-related protein RAB 99.8 3.2E-19 1.1E-23 173.3 9.2 160 58-252 21-184 (191)
75 2bme_A RAB4A, RAS-related prot 99.8 9E-19 3.1E-23 168.5 12.3 159 58-253 8-172 (186)
76 1wms_A RAB-9, RAB9, RAS-relate 99.8 2.8E-18 9.5E-23 163.5 15.6 158 59-253 6-173 (177)
77 1u8z_A RAS-related protein RAL 99.8 2.4E-18 8.2E-23 161.7 14.8 155 60-252 4-165 (168)
78 2a5j_A RAS-related protein RAB 99.8 1.1E-18 3.6E-23 169.6 12.7 160 58-252 19-182 (191)
79 1upt_A ARL1, ADP-ribosylation 99.8 1.4E-18 5E-23 164.3 13.3 158 59-253 6-168 (171)
80 2nzj_A GTP-binding protein REM 99.8 1.8E-18 6E-23 164.4 13.9 158 59-252 3-167 (175)
81 1mky_A Probable GTP-binding pr 99.8 2.3E-18 7.8E-23 189.9 16.7 155 61-254 2-166 (439)
82 1g16_A RAS-related protein SEC 99.8 1.5E-18 5.1E-23 163.9 13.0 156 60-253 3-164 (170)
83 2h57_A ADP-ribosylation factor 99.8 2.1E-18 7E-23 167.2 14.2 159 59-253 20-186 (190)
84 2fu5_C RAS-related protein RAB 99.8 6.9E-19 2.4E-23 169.1 10.7 158 59-253 7-170 (183)
85 3k53_A Ferrous iron transport 99.8 1.2E-18 4.1E-23 179.7 13.1 154 60-253 3-165 (271)
86 2il1_A RAB12; G-protein, GDP, 99.8 1.3E-18 4.5E-23 169.3 12.7 159 58-252 24-188 (192)
87 3a1s_A Iron(II) transport prot 99.8 9.5E-19 3.2E-23 179.4 11.6 155 59-253 4-166 (258)
88 2ew1_A RAS-related protein RAB 99.8 1.9E-18 6.6E-23 170.1 13.4 160 57-253 23-188 (201)
89 1z2a_A RAS-related protein RAB 99.8 1.5E-18 5.1E-23 163.6 12.0 159 59-252 4-165 (168)
90 2a9k_A RAS-related protein RAL 99.8 3.6E-18 1.2E-22 163.8 14.7 156 59-252 17-179 (187)
91 2b6h_A ADP-ribosylation factor 99.8 7.8E-18 2.7E-22 164.1 17.2 160 57-253 26-190 (192)
92 2bov_A RAla, RAS-related prote 99.8 5.6E-18 1.9E-22 165.6 16.2 157 59-253 13-176 (206)
93 1x3s_A RAS-related protein RAB 99.8 2.7E-18 9.2E-23 166.3 13.8 159 60-254 15-178 (195)
94 1z06_A RAS-related protein RAB 99.8 2.2E-18 7.4E-23 166.9 13.0 158 59-253 19-187 (189)
95 1kao_A RAP2A; GTP-binding prot 99.8 3.2E-18 1.1E-22 160.7 13.8 157 60-252 3-164 (167)
96 1m2o_B GTP-binding protein SAR 99.8 5.4E-18 1.8E-22 165.0 15.8 158 60-252 23-190 (190)
97 1fzq_A ADP-ribosylation factor 99.8 1.3E-17 4.5E-22 160.8 18.2 159 59-254 15-178 (181)
98 4gzl_A RAS-related C3 botulinu 99.8 1.1E-18 3.6E-23 171.9 10.7 161 58-252 28-203 (204)
99 3llu_A RAS-related GTP-binding 99.8 4.3E-18 1.5E-22 166.2 14.9 167 56-252 16-195 (196)
100 2fh5_B SR-beta, signal recogni 99.8 7.9E-18 2.7E-22 166.2 16.9 168 59-252 6-214 (214)
101 1c1y_A RAS-related protein RAP 99.8 4.3E-18 1.5E-22 160.2 14.3 158 60-252 3-165 (167)
102 4dsu_A GTPase KRAS, isoform 2B 99.8 5E-18 1.7E-22 163.3 15.1 155 60-253 4-165 (189)
103 3cph_A RAS-related protein SEC 99.8 2.8E-18 9.7E-23 168.9 13.6 158 58-253 18-181 (213)
104 2fn4_A P23, RAS-related protei 99.8 1.9E-18 6.6E-23 164.8 12.0 158 58-253 7-171 (181)
105 3t5g_A GTP-binding protein RHE 99.8 9.9E-19 3.4E-23 167.6 10.0 158 59-254 5-169 (181)
106 3q72_A GTP-binding protein RAD 99.8 3.1E-18 1.1E-22 161.5 13.1 156 60-252 2-162 (166)
107 1mh1_A RAC1; GTP-binding, GTPa 99.8 2.7E-18 9.1E-23 164.8 12.7 165 60-256 5-182 (186)
108 2f7s_A C25KG, RAS-related prot 99.8 1.5E-18 5.2E-23 171.8 11.0 158 58-252 23-197 (217)
109 3oes_A GTPase rhebl1; small GT 99.8 2E-18 6.9E-23 169.1 11.5 162 57-254 21-187 (201)
110 1ksh_A ARF-like protein 2; sma 99.8 2.4E-18 8E-23 165.9 11.8 160 58-254 16-180 (186)
111 2gj8_A MNME, tRNA modification 99.8 2.4E-18 8.3E-23 164.8 11.7 151 61-254 5-166 (172)
112 1ky3_A GTP-binding protein YPT 99.8 1.6E-18 5.5E-23 165.6 10.3 160 58-252 6-176 (182)
113 2o52_A RAS-related protein RAB 99.8 1.2E-18 4E-23 171.0 9.5 159 58-253 23-187 (200)
114 1z08_A RAS-related protein RAB 99.8 1.4E-18 4.8E-23 164.3 9.7 158 59-253 5-168 (170)
115 2wjg_A FEOB, ferrous iron tran 99.8 3.7E-18 1.3E-22 164.7 12.8 156 60-255 7-170 (188)
116 2ce2_X GTPase HRAS; signaling 99.8 1.5E-17 5E-22 155.8 16.6 155 61-252 4-163 (166)
117 1vg8_A RAS-related protein RAB 99.8 3.3E-18 1.1E-22 167.6 12.6 159 58-253 6-174 (207)
118 2bcg_Y Protein YP2, GTP-bindin 99.8 4.1E-18 1.4E-22 167.3 13.0 159 58-253 6-170 (206)
119 1f6b_A SAR1; gtpases, N-termin 99.8 4.3E-18 1.5E-22 166.8 13.1 158 60-252 25-197 (198)
120 4dkx_A RAS-related protein RAB 99.8 5.7E-18 1.9E-22 169.0 14.0 160 60-254 13-176 (216)
121 3bwd_D RAC-like GTP-binding pr 99.8 1.2E-18 4.3E-23 166.7 8.7 166 59-255 7-182 (182)
122 2gf0_A GTP-binding protein DI- 99.7 1.5E-17 5.3E-22 161.6 16.5 160 59-255 7-172 (199)
123 2qu8_A Putative nucleolar GTP- 99.7 1.8E-17 6.2E-22 166.0 17.1 164 58-253 27-204 (228)
124 2j0v_A RAC-like GTP-binding pr 99.7 3.5E-18 1.2E-22 168.6 11.5 166 59-256 8-182 (212)
125 2hjg_A GTP-binding protein ENG 99.7 1.5E-18 5.1E-23 191.2 9.6 154 61-254 4-165 (436)
126 2xtp_A GTPase IMAP family memb 99.7 4E-18 1.4E-22 174.3 12.1 169 59-254 21-208 (260)
127 3reg_A RHO-like small GTPase; 99.7 2.1E-18 7E-23 167.8 9.1 163 59-254 22-188 (194)
128 3gj0_A GTP-binding nuclear pro 99.7 2.6E-18 8.9E-23 170.9 10.0 161 56-253 11-174 (221)
129 3b1v_A Ferrous iron uptake tra 99.7 3.1E-18 1.1E-22 176.9 10.8 154 60-254 3-164 (272)
130 3q85_A GTP-binding protein REM 99.7 9.1E-18 3.1E-22 158.7 13.1 156 60-252 2-165 (169)
131 1moz_A ARL1, ADP-ribosylation 99.7 5E-18 1.7E-22 162.8 10.8 159 58-253 16-179 (183)
132 3con_A GTPase NRAS; structural 99.7 1.6E-17 5.6E-22 160.6 14.4 154 60-252 21-181 (190)
133 3q3j_B RHO-related GTP-binding 99.7 6.5E-18 2.2E-22 167.7 11.7 165 59-254 26-203 (214)
134 3cpj_B GTP-binding protein YPT 99.7 4.2E-18 1.4E-22 169.9 10.3 160 58-254 11-176 (223)
135 3gee_A MNME, tRNA modification 99.7 4.9E-18 1.7E-22 188.4 11.6 155 61-256 234-401 (476)
136 1mky_A Probable GTP-binding pr 99.7 2E-17 6.9E-22 182.3 15.9 163 59-252 179-353 (439)
137 2j1l_A RHO-related GTP-binding 99.7 2E-17 6.8E-22 164.0 14.0 160 59-253 33-208 (214)
138 2x77_A ADP-ribosylation factor 99.7 7.3E-18 2.5E-22 163.1 10.2 159 59-254 21-184 (189)
139 4dcu_A GTP-binding protein ENG 99.7 5.3E-18 1.8E-22 187.9 10.3 156 60-255 23-186 (456)
140 3ihw_A Centg3; RAS, centaurin, 99.7 1.7E-17 5.8E-22 160.7 12.5 153 59-252 19-178 (184)
141 3o47_A ADP-ribosylation factor 99.7 2.2E-17 7.5E-22 175.2 13.9 158 59-253 164-326 (329)
142 3l0i_B RAS-related protein RAB 99.7 3E-19 1E-23 174.7 -0.7 160 58-254 31-196 (199)
143 2q3h_A RAS homolog gene family 99.7 2E-17 6.9E-22 161.6 12.1 162 58-253 18-194 (201)
144 2gco_A H9, RHO-related GTP-bin 99.7 3.2E-17 1.1E-21 160.7 13.4 161 60-252 25-198 (201)
145 2fv8_A H6, RHO-related GTP-bin 99.7 1.7E-17 5.8E-22 163.4 11.4 162 60-255 25-201 (207)
146 3cbq_A GTP-binding protein REM 99.7 3.7E-17 1.3E-21 159.9 13.5 162 58-256 21-190 (195)
147 3c5c_A RAS-like protein 12; GD 99.7 4E-17 1.4E-21 158.2 13.1 157 59-252 20-184 (187)
148 2atv_A RERG, RAS-like estrogen 99.7 8.2E-17 2.8E-21 156.9 15.3 162 55-252 23-189 (196)
149 3r7w_A Gtpase1, GTP-binding pr 99.7 7.6E-17 2.6E-21 169.4 16.0 163 60-252 3-179 (307)
150 2cxx_A Probable GTP-binding pr 99.7 2.4E-17 8.3E-22 158.8 11.2 157 61-254 2-184 (190)
151 4djt_A GTP-binding nuclear pro 99.7 1.1E-17 3.7E-22 165.8 8.7 161 59-254 10-175 (218)
152 3th5_A RAS-related C3 botulinu 99.5 8.4E-19 2.9E-23 172.1 0.0 161 58-251 28-202 (204)
153 3t5d_A Septin-7; GTP-binding p 99.7 7.8E-17 2.7E-21 166.4 14.0 168 59-254 7-204 (274)
154 3lxw_A GTPase IMAP family memb 99.7 1.2E-16 4E-21 162.7 14.5 168 60-254 21-208 (247)
155 2iwr_A Centaurin gamma 1; ANK 99.7 2E-16 6.8E-21 151.1 15.2 155 59-252 6-167 (178)
156 2yc2_C IFT27, small RAB-relate 99.7 1.1E-17 3.6E-22 163.8 6.4 156 60-252 20-190 (208)
157 1m7b_A RND3/RHOE small GTP-bin 99.7 4.7E-17 1.6E-21 156.9 10.6 162 59-252 6-181 (184)
158 1gwn_A RHO-related GTP-binding 99.7 4.8E-17 1.7E-21 160.5 10.3 162 58-251 26-201 (205)
159 1xzp_A Probable tRNA modificat 99.7 1.3E-16 4.3E-21 177.2 14.1 152 61-253 244-404 (482)
160 3geh_A MNME, tRNA modification 99.7 6.2E-17 2.1E-21 178.9 10.5 154 61-256 225-386 (462)
161 3lvq_E ARF-GAP with SH3 domain 99.7 4E-16 1.4E-20 174.6 15.7 158 59-254 321-484 (497)
162 2wkq_A NPH1-1, RAS-related C3 99.6 5.5E-16 1.9E-20 163.2 11.2 163 59-255 154-331 (332)
163 1lnz_A SPO0B-associated GTP-bi 99.6 5E-16 1.7E-20 165.3 10.6 156 60-254 158-330 (342)
164 2g3y_A GTP-binding protein GEM 99.6 1.3E-15 4.3E-20 151.4 12.1 158 59-252 36-201 (211)
165 2qag_A Septin-2, protein NEDD5 99.6 1.6E-15 5.5E-20 162.8 11.6 198 60-291 37-265 (361)
166 3lxx_A GTPase IMAP family memb 99.6 1.9E-15 6.4E-20 152.5 11.4 167 58-253 27-213 (239)
167 2zej_A Dardarin, leucine-rich 99.6 2.1E-15 7.1E-20 145.6 10.8 168 61-254 3-178 (184)
168 2e87_A Hypothetical protein PH 99.6 9.7E-15 3.3E-19 156.5 16.8 156 59-253 166-335 (357)
169 2qtf_A Protein HFLX, GTP-bindi 99.6 6.4E-15 2.2E-19 158.2 15.0 165 59-256 178-356 (364)
170 1nrj_B SR-beta, signal recogni 99.6 5.4E-15 1.9E-19 146.2 12.9 145 58-225 10-169 (218)
171 2aka_B Dynamin-1; fusion prote 99.6 5.1E-15 1.8E-19 153.9 12.9 171 59-251 25-250 (299)
172 2cjw_A GTP-binding protein GEM 99.6 9E-15 3.1E-19 142.5 12.7 157 60-252 6-170 (192)
173 3def_A T7I23.11 protein; chlor 99.6 6.8E-15 2.3E-19 150.8 12.3 116 59-185 35-165 (262)
174 1jwy_B Dynamin A GTPase domain 99.6 4.5E-15 1.5E-19 155.7 11.0 116 117-254 129-262 (315)
175 2f9l_A RAB11B, member RAS onco 99.6 9.4E-15 3.2E-19 142.8 12.4 157 60-253 5-167 (199)
176 3dpu_A RAB family protein; roc 99.6 1.9E-15 6.3E-20 170.8 7.8 160 59-255 40-209 (535)
177 3p32_A Probable GTPase RV1496/ 99.6 4E-15 1.4E-19 159.5 9.9 173 59-254 78-284 (355)
178 3r7w_B Gtpase2, GTP-binding pr 99.6 2.8E-14 9.5E-19 149.8 15.5 163 62-254 1-174 (331)
179 2p67_A LAO/AO transport system 99.6 7.4E-15 2.5E-19 156.5 10.5 172 58-253 54-260 (341)
180 1pui_A ENGB, probable GTP-bind 99.6 4.2E-14 1.4E-18 138.8 15.0 163 58-254 24-199 (210)
181 1h65_A Chloroplast outer envel 99.5 1.2E-13 4.1E-18 142.1 18.9 115 60-185 39-168 (270)
182 1oix_A RAS-related protein RAB 99.5 5.1E-14 1.7E-18 136.9 12.5 158 58-252 27-190 (191)
183 2j69_A Bacterial dynamin-like 99.5 7.9E-14 2.7E-18 161.7 13.6 121 119-253 174-324 (695)
184 3c5h_A Glucocorticoid receptor 99.5 8.9E-14 3.1E-18 141.9 12.0 169 58-252 17-253 (255)
185 2ged_A SR-beta, signal recogni 99.5 7.5E-14 2.6E-18 135.0 8.4 114 58-187 46-172 (193)
186 1wxq_A GTP-binding protein; st 99.5 3.8E-14 1.3E-18 153.8 6.3 82 62-155 2-114 (397)
187 2x2e_A Dynamin-1; nitration, h 99.4 1.9E-13 6.5E-18 146.2 9.1 170 59-250 30-254 (353)
188 1udx_A The GTP-binding protein 99.4 1.3E-12 4.4E-17 142.2 15.1 156 60-254 157-325 (416)
189 2qpt_A EH domain-containing pr 99.4 6.6E-13 2.3E-17 149.9 13.0 143 54-198 59-243 (550)
190 2wsm_A Hydrogenase expression/ 99.4 1.8E-13 6.1E-18 135.7 6.0 165 59-254 29-214 (221)
191 2www_A Methylmalonic aciduria 99.4 1.8E-12 6.2E-17 138.4 13.6 115 116-253 164-278 (349)
192 1yrb_A ATP(GTP)binding protein 99.3 3.1E-12 1E-16 130.2 9.6 172 59-253 13-256 (262)
193 3t34_A Dynamin-related protein 99.3 3.4E-12 1.2E-16 136.8 10.1 156 59-225 33-246 (360)
194 3zvr_A Dynamin-1; hydrolase, D 99.3 9.2E-12 3.2E-16 143.9 13.0 170 59-250 50-274 (772)
195 4a9a_A Ribosome-interacting GT 99.3 3.8E-11 1.3E-15 128.7 16.0 113 59-184 71-195 (376)
196 1jal_A YCHF protein; nucleotid 99.2 7.3E-11 2.5E-15 125.8 12.0 82 61-154 3-108 (363)
197 2qag_C Septin-7; cell cycle, c 99.2 1.2E-10 4.2E-15 126.7 13.9 164 60-253 31-226 (418)
198 2qnr_A Septin-2, protein NEDD5 99.2 1.8E-10 6.2E-15 120.4 13.1 151 60-224 18-199 (301)
199 2j37_W Signal recognition part 99.1 4.7E-11 1.6E-15 132.7 7.7 172 58-251 99-310 (504)
200 2dby_A GTP-binding protein; GD 99.1 4.1E-10 1.4E-14 120.7 13.9 82 61-154 2-111 (368)
201 2qm8_A GTPase/ATPase; G protei 99.1 5.8E-11 2E-15 126.1 6.6 116 116-253 145-260 (337)
202 2hf9_A Probable hydrogenase ni 99.0 3.3E-10 1.1E-14 112.3 7.9 164 59-252 37-222 (226)
203 4fid_A G protein alpha subunit 98.9 9.6E-10 3.3E-14 116.2 8.0 136 103-252 145-326 (340)
204 1cip_A Protein (guanine nucleo 98.9 1.3E-09 4.3E-14 116.3 7.4 135 104-252 178-342 (353)
205 3e1y_E Eukaryotic peptide chai 98.8 5.2E-09 1.8E-13 103.0 8.8 85 259-356 3-91 (204)
206 2qag_B Septin-6, protein NEDD5 98.8 1.7E-08 5.9E-13 109.6 12.4 145 59-221 41-217 (427)
207 1zcb_A G alpha I/13; GTP-bindi 98.8 2.1E-09 7E-14 115.1 4.0 133 106-252 188-351 (362)
208 3sop_A Neuronal-specific septi 98.7 1.2E-07 4.1E-12 97.3 14.2 141 61-207 3-174 (270)
209 1tq4_A IIGP1, interferon-induc 98.7 1.5E-07 5.1E-12 102.2 14.6 165 62-255 71-254 (413)
210 2ohf_A Protein OLA1, GTP-bindi 98.6 3.9E-08 1.3E-12 105.9 7.6 83 60-154 22-128 (396)
211 3ohm_A Guanine nucleotide-bind 98.6 2.1E-08 7.3E-13 105.5 3.7 135 103-252 151-316 (327)
212 2v3c_C SRP54, signal recogniti 98.6 1.2E-08 4.1E-13 111.6 1.9 123 59-184 98-251 (432)
213 1u0l_A Probable GTPase ENGC; p 98.6 8.4E-08 2.9E-12 100.0 7.7 103 120-249 64-168 (301)
214 1azs_C GS-alpha; complex (lyas 98.5 3.9E-08 1.3E-12 106.2 5.2 78 106-183 204-296 (402)
215 3ec1_A YQEH GTPase; atnos1, at 98.5 1E-08 3.4E-13 110.2 -0.5 116 61-185 163-288 (369)
216 3h2y_A GTPase family protein; 98.5 1.8E-08 6.1E-13 108.2 0.0 117 61-185 161-287 (368)
217 2xtz_A Guanine nucleotide-bind 98.5 8.9E-08 3.1E-12 102.0 5.1 122 117-252 181-343 (354)
218 3dm5_A SRP54, signal recogniti 98.5 5.4E-07 1.9E-11 98.2 11.1 123 59-184 99-252 (443)
219 3kl4_A SRP54, signal recogniti 98.4 3E-07 1E-11 100.3 7.9 124 59-184 96-251 (433)
220 1ni3_A YCHF GTPase, YCHF GTP-b 98.4 7.7E-07 2.6E-11 95.9 9.3 84 60-154 20-127 (392)
221 2xxa_A Signal recognition part 98.3 7.9E-07 2.7E-11 97.2 8.1 124 58-184 98-253 (433)
222 3l82_B F-box only protein 4; T 98.3 6.5E-06 2.2E-10 80.3 12.6 112 120-254 97-223 (227)
223 1puj_A YLQF, conserved hypothe 98.2 2.3E-06 8E-11 88.2 8.1 102 123-253 3-105 (282)
224 1j8m_F SRP54, signal recogniti 98.2 1.1E-06 3.9E-11 91.2 5.8 122 60-184 98-252 (297)
225 2yv5_A YJEQ protein; hydrolase 98.1 3.5E-06 1.2E-10 87.8 7.1 96 129-248 66-163 (302)
226 1f5n_A Interferon-induced guan 98.0 3.2E-06 1.1E-10 95.5 4.9 106 59-171 37-149 (592)
227 3ec1_A YQEH GTPase; atnos1, at 98.0 1.1E-05 3.7E-10 86.5 7.7 111 120-252 50-160 (369)
228 4dzz_A Plasmid partitioning pr 97.8 4.6E-05 1.6E-09 73.7 8.8 121 61-184 2-143 (206)
229 3cnl_A YLQF, putative uncharac 97.8 9.6E-06 3.3E-10 82.7 4.0 95 126-252 4-99 (262)
230 1puj_A YLQF, conserved hypothe 97.8 1.8E-05 6.2E-10 81.5 5.8 58 60-131 120-177 (282)
231 3h2y_A GTPase family protein; 97.8 2.6E-05 9E-10 83.4 6.6 102 128-252 55-158 (368)
232 3e70_C DPA, signal recognition 97.7 5.1E-05 1.8E-09 79.8 8.6 124 59-184 128-281 (328)
233 3l2o_B F-box only protein 4; s 97.7 0.00012 4E-09 74.9 9.5 105 127-254 195-308 (312)
234 1zu4_A FTSY; GTPase, signal re 97.7 7.2E-05 2.5E-09 78.4 8.3 122 58-184 103-267 (320)
235 3cnl_A YLQF, putative uncharac 97.6 3.1E-05 1.1E-09 78.9 3.3 58 61-132 100-157 (262)
236 2ph1_A Nucleotide-binding prot 97.5 0.00025 8.7E-09 71.7 9.8 67 117-183 127-194 (262)
237 3cwq_A Para family chromosome 97.5 9.6E-05 3.3E-09 72.4 6.4 120 62-184 2-133 (209)
238 2yhs_A FTSY, cell division pro 97.5 0.0002 6.8E-09 78.9 8.6 123 58-183 291-450 (503)
239 2ffh_A Protein (FFH); SRP54, s 97.5 0.00018 6.1E-09 78.2 8.2 123 59-184 97-250 (425)
240 3szr_A Interferon-induced GTP- 97.4 0.00025 8.7E-09 80.8 9.4 68 118-185 146-228 (608)
241 1vma_A Cell division protein F 97.4 0.00015 5.2E-09 75.5 6.4 123 59-184 103-262 (306)
242 1rj9_A FTSY, signal recognitio 97.4 0.00036 1.2E-08 72.6 8.7 123 59-184 101-260 (304)
243 2px0_A Flagellar biosynthesis 97.3 0.00034 1.2E-08 72.4 7.8 122 59-184 104-252 (296)
244 3k9g_A PF-32 protein; ssgcid, 97.3 0.001 3.4E-08 67.2 10.3 66 117-184 143-210 (267)
245 1t9h_A YLOQ, probable GTPase E 97.2 0.00021 7.1E-09 74.4 4.8 78 139-225 83-162 (307)
246 3kjh_A CO dehydrogenase/acetyl 97.2 0.00016 5.4E-09 72.0 3.1 65 117-183 130-195 (254)
247 1xe1_A Hypothetical protein PF 97.1 0.0026 9.1E-08 55.6 10.0 79 260-352 32-113 (116)
248 1ls1_A Signal recognition part 97.1 0.00058 2E-08 70.7 6.8 123 59-184 97-250 (295)
249 3end_A Light-independent proto 97.1 0.00048 1.6E-08 71.3 5.6 65 118-183 156-225 (307)
250 2oze_A ORF delta'; para, walke 97.0 0.0028 9.5E-08 65.1 10.8 65 118-184 154-225 (298)
251 1wcv_1 SOJ, segregation protei 97.0 0.0012 4E-08 66.5 7.6 66 117-184 110-182 (257)
252 1g3q_A MIND ATPase, cell divis 97.0 0.0015 5.2E-08 64.4 8.0 66 118-185 111-177 (237)
253 3la6_A Tyrosine-protein kinase 96.9 0.0033 1.1E-07 64.6 10.6 67 118-185 201-268 (286)
254 1hyq_A MIND, cell division inh 96.9 0.0012 3.9E-08 66.5 7.0 65 118-184 110-175 (263)
255 3q9l_A Septum site-determining 96.9 0.0012 4E-08 66.2 6.9 64 118-183 113-185 (260)
256 3bfv_A CAPA1, CAPB2, membrane 96.9 0.0028 9.5E-08 64.6 9.2 66 118-184 191-257 (271)
257 3q5d_A Atlastin-1; G protein, 96.8 0.0042 1.4E-07 67.7 10.8 26 58-83 65-90 (447)
258 3ea0_A ATPase, para family; al 96.8 0.0015 5E-08 64.8 6.3 65 118-184 118-185 (245)
259 3cio_A ETK, tyrosine-protein k 96.8 0.0048 1.6E-07 63.8 10.2 66 118-184 213-279 (299)
260 3b9q_A Chloroplast SRP recepto 96.5 0.0078 2.7E-07 62.3 10.0 123 59-184 99-259 (302)
261 2rcn_A Probable GTPase ENGC; Y 96.4 0.011 3.9E-07 62.5 10.4 84 139-248 127-213 (358)
262 2xj4_A MIPZ; replication, cell 96.4 0.0014 4.8E-08 67.2 2.9 34 118-153 103-136 (286)
263 2og2_A Putative signal recogni 96.2 0.011 3.8E-07 62.6 9.0 124 59-184 156-316 (359)
264 1cp2_A CP2, nitrogenase iron p 96.0 0.019 6.4E-07 57.7 9.4 66 118-183 115-186 (269)
265 1d1n_A Initiation factor 2; be 96.0 0.018 6.1E-07 49.0 7.5 81 265-353 9-91 (99)
266 2afh_E Nitrogenase iron protei 95.8 0.016 5.3E-07 59.2 7.7 66 118-183 118-189 (289)
267 1bif_A 6-phosphofructo-2-kinas 95.6 0.0068 2.3E-07 66.7 4.3 106 60-177 39-155 (469)
268 2crv_A IF-2MT, translation ini 95.4 0.097 3.3E-06 46.0 10.0 83 264-354 12-100 (120)
269 1nij_A Hypothetical protein YJ 95.3 0.017 5.7E-07 60.2 5.8 26 59-84 3-28 (318)
270 3ug7_A Arsenical pump-driving 95.1 0.21 7.3E-06 52.4 13.9 43 143-185 237-280 (349)
271 1t9h_A YLOQ, probable GTPase E 94.9 0.0065 2.2E-07 63.1 1.2 23 61-83 174-196 (307)
272 2yv5_A YJEQ protein; hydrolase 94.8 0.033 1.1E-06 57.5 6.3 23 61-84 166-188 (302)
273 3zq6_A Putative arsenical pump 94.7 0.32 1.1E-05 50.4 13.7 41 144-184 223-264 (324)
274 2rcn_A Probable GTPase ENGC; Y 94.7 0.013 4.3E-07 62.2 2.8 24 61-84 216-239 (358)
275 2yvu_A Probable adenylyl-sulfa 94.7 0.18 6.3E-06 47.3 10.7 24 60-83 13-36 (186)
276 3zvl_A Bifunctional polynucleo 94.3 0.095 3.2E-06 56.6 8.7 90 59-182 257-346 (416)
277 3io3_A DEHA2D07832P; chaperone 94.2 0.48 1.7E-05 49.8 13.7 42 144-185 232-274 (348)
278 1ye8_A Protein THEP1, hypothet 94.2 0.026 8.9E-07 53.5 3.5 23 62-84 2-24 (178)
279 1lvg_A Guanylate kinase, GMP k 94.2 0.023 7.9E-07 54.7 3.2 23 61-83 5-27 (198)
280 1kgd_A CASK, peripheral plasma 94.1 0.034 1.2E-06 52.5 4.0 24 61-84 6-29 (180)
281 4ido_A Atlastin-1; GTPase, GTP 93.8 0.2 6.8E-06 54.4 10.0 75 58-132 65-153 (457)
282 3ney_A 55 kDa erythrocyte memb 93.6 0.047 1.6E-06 52.7 4.1 26 59-84 18-43 (197)
283 1zp6_A Hypothetical protein AT 93.6 0.044 1.5E-06 51.8 3.8 24 60-83 9-32 (191)
284 3a00_A Guanylate kinase, GMP k 93.5 0.036 1.2E-06 52.6 3.0 24 61-84 2-25 (186)
285 1znw_A Guanylate kinase, GMP k 93.5 0.038 1.3E-06 53.4 3.2 25 60-84 20-44 (207)
286 3tr0_A Guanylate kinase, GMP k 93.4 0.04 1.4E-06 52.6 3.3 24 61-84 8-31 (205)
287 1ihu_A Arsenical pump-driving 93.4 0.17 5.7E-06 57.1 8.9 41 144-184 199-240 (589)
288 2kjq_A DNAA-related protein; s 93.2 0.22 7.5E-06 45.5 7.8 24 60-83 36-59 (149)
289 3c8u_A Fructokinase; YP_612366 93.2 0.052 1.8E-06 52.4 3.7 24 60-83 22-45 (208)
290 3jvv_A Twitching mobility prot 93.1 0.28 9.6E-06 51.8 9.5 23 61-83 124-146 (356)
291 3asz_A Uridine kinase; cytidin 93.1 0.056 1.9E-06 52.0 3.8 24 60-83 6-29 (211)
292 1z6g_A Guanylate kinase; struc 93.1 0.047 1.6E-06 53.4 3.2 25 60-84 23-47 (218)
293 3bos_A Putative DNA replicatio 93.0 0.084 2.9E-06 51.2 5.0 25 60-84 52-76 (242)
294 1kag_A SKI, shikimate kinase I 92.9 0.058 2E-06 50.0 3.5 25 61-85 5-29 (173)
295 1ihu_A Arsenical pump-driving 92.9 0.4 1.4E-05 54.0 11.0 43 142-184 489-532 (589)
296 2j41_A Guanylate kinase; GMP, 92.8 0.069 2.4E-06 50.9 3.9 24 61-84 7-30 (207)
297 1htw_A HI0065; nucleotide-bind 92.8 0.058 2E-06 50.1 3.2 24 61-84 34-57 (158)
298 1s96_A Guanylate kinase, GMP k 92.8 0.057 1.9E-06 53.0 3.3 24 61-84 17-40 (219)
299 4eun_A Thermoresistant glucoki 92.6 0.076 2.6E-06 50.9 3.9 27 59-85 28-54 (200)
300 3kb2_A SPBC2 prophage-derived 92.6 0.069 2.4E-06 49.2 3.5 25 61-85 2-26 (173)
301 1np6_A Molybdopterin-guanine d 92.5 0.081 2.8E-06 50.0 3.9 24 60-83 6-29 (174)
302 3tau_A Guanylate kinase, GMP k 92.5 0.081 2.8E-06 51.1 4.0 25 60-84 8-32 (208)
303 1knq_A Gluconate kinase; ALFA/ 92.5 0.093 3.2E-06 48.8 4.3 26 60-85 8-33 (175)
304 4gp7_A Metallophosphoesterase; 92.4 0.063 2.2E-06 50.2 3.0 21 61-81 10-30 (171)
305 1ex7_A Guanylate kinase; subst 92.4 0.071 2.4E-06 51.0 3.3 24 61-84 2-25 (186)
306 3iij_A Coilin-interacting nucl 92.4 0.09 3.1E-06 49.2 4.0 26 60-85 11-36 (180)
307 4fcw_A Chaperone protein CLPB; 92.3 0.25 8.6E-06 50.3 7.7 25 60-84 47-71 (311)
308 3lw7_A Adenylate kinase relate 92.3 0.086 2.9E-06 48.4 3.7 24 61-85 2-25 (179)
309 2woo_A ATPase GET3; tail-ancho 92.2 0.89 3E-05 47.2 11.7 40 144-183 222-262 (329)
310 3vaa_A Shikimate kinase, SK; s 92.1 0.095 3.2E-06 50.1 3.9 27 60-86 25-51 (199)
311 1xjc_A MOBB protein homolog; s 92.1 0.093 3.2E-06 49.4 3.7 24 60-83 4-27 (169)
312 3fkq_A NTRC-like two-domain pr 92.1 0.11 3.7E-06 55.2 4.7 36 117-154 258-293 (373)
313 1ukz_A Uridylate kinase; trans 92.0 0.13 4.3E-06 49.1 4.6 27 59-85 14-40 (203)
314 2p5t_B PEZT; postsegregational 92.0 0.31 1.1E-05 48.5 7.7 27 59-85 31-57 (253)
315 2qor_A Guanylate kinase; phosp 92.0 0.091 3.1E-06 50.5 3.6 25 60-84 12-36 (204)
316 2f1r_A Molybdopterin-guanine d 92.0 0.048 1.7E-06 51.4 1.6 23 61-83 3-25 (171)
317 3tif_A Uncharacterized ABC tra 92.0 0.061 2.1E-06 53.4 2.4 23 61-83 32-54 (235)
318 2pcj_A ABC transporter, lipopr 91.9 0.067 2.3E-06 52.6 2.6 23 61-83 31-53 (224)
319 2bdt_A BH3686; alpha-beta prot 91.7 0.098 3.3E-06 49.4 3.4 22 62-83 4-25 (189)
320 3iqw_A Tail-anchored protein t 91.7 0.73 2.5E-05 48.1 10.4 40 144-183 223-263 (334)
321 3t61_A Gluconokinase; PSI-biol 91.6 0.11 3.9E-06 49.5 3.8 26 60-85 18-43 (202)
322 1y63_A LMAJ004144AAA protein; 91.6 0.14 4.8E-06 48.3 4.4 24 60-83 10-33 (184)
323 3sr0_A Adenylate kinase; phosp 91.6 0.23 7.9E-06 48.1 6.0 24 62-85 2-25 (206)
324 4a1f_A DNAB helicase, replicat 91.6 0.45 1.5E-05 49.8 8.6 23 61-83 47-69 (338)
325 2onk_A Molybdate/tungstate ABC 91.5 0.086 3E-06 52.5 2.9 23 61-83 25-47 (240)
326 1cke_A CK, MSSA, protein (cyti 91.5 0.11 3.7E-06 50.4 3.6 25 61-85 6-30 (227)
327 3trf_A Shikimate kinase, SK; a 91.5 0.11 3.9E-06 48.6 3.6 27 60-86 5-31 (185)
328 3a4m_A L-seryl-tRNA(SEC) kinas 91.4 0.25 8.6E-06 49.4 6.3 24 60-83 4-27 (260)
329 2eyu_A Twitching motility prot 91.4 0.11 3.6E-06 52.5 3.5 23 61-83 26-48 (261)
330 2bbw_A Adenylate kinase 4, AK4 91.3 0.11 3.8E-06 51.4 3.6 25 61-85 28-52 (246)
331 2if2_A Dephospho-COA kinase; a 91.3 0.12 4.1E-06 49.3 3.7 24 61-85 2-25 (204)
332 2v9p_A Replication protein E1; 91.3 0.1 3.6E-06 53.9 3.4 24 60-83 126-149 (305)
333 3b85_A Phosphate starvation-in 91.3 0.092 3.2E-06 51.1 2.8 22 62-83 24-45 (208)
334 2i3b_A HCR-ntpase, human cance 91.3 0.1 3.6E-06 49.9 3.1 23 62-84 3-25 (189)
335 2jaq_A Deoxyguanosine kinase; 91.2 0.13 4.3E-06 48.8 3.6 24 62-85 2-25 (205)
336 2v1u_A Cell division control p 91.2 0.67 2.3E-05 48.3 9.6 25 59-83 43-67 (387)
337 3ec2_A DNA replication protein 91.1 0.11 3.6E-06 48.8 3.0 24 60-83 38-61 (180)
338 2cbz_A Multidrug resistance-as 91.1 0.09 3.1E-06 52.2 2.6 23 61-83 32-54 (237)
339 2pze_A Cystic fibrosis transme 91.1 0.093 3.2E-06 51.8 2.6 23 61-83 35-57 (229)
340 1b0u_A Histidine permease; ABC 91.1 0.086 2.9E-06 53.2 2.4 23 61-83 33-55 (262)
341 2d2e_A SUFC protein; ABC-ATPas 91.1 0.1 3.4E-06 52.3 2.9 23 61-83 30-52 (250)
342 3pfi_A Holliday junction ATP-d 91.0 0.59 2E-05 48.2 8.9 25 60-84 55-79 (338)
343 1ly1_A Polynucleotide kinase; 91.0 0.13 4.4E-06 47.7 3.4 22 61-82 3-24 (181)
344 1zo1_I IF2, translation initia 91.0 0.62 2.1E-05 51.4 9.4 103 243-353 386-493 (501)
345 3uie_A Adenylyl-sulfate kinase 91.0 0.15 5E-06 48.8 3.8 25 60-84 25-49 (200)
346 1nks_A Adenylate kinase; therm 91.0 0.14 4.9E-06 47.9 3.7 25 61-85 2-26 (194)
347 1mv5_A LMRA, multidrug resista 91.0 0.096 3.3E-06 52.1 2.6 23 61-83 29-51 (243)
348 3aez_A Pantothenate kinase; tr 91.0 0.15 5.1E-06 52.9 4.1 25 59-83 89-113 (312)
349 1g6h_A High-affinity branched- 91.0 0.088 3E-06 52.9 2.4 23 61-83 34-56 (257)
350 4g1u_C Hemin import ATP-bindin 90.9 0.087 3E-06 53.3 2.3 23 61-83 38-60 (266)
351 1qhx_A CPT, protein (chloramph 90.9 0.15 5.1E-06 47.4 3.8 25 61-85 4-28 (178)
352 3gfo_A Cobalt import ATP-bindi 90.9 0.091 3.1E-06 53.5 2.4 23 61-83 35-57 (275)
353 2qt1_A Nicotinamide riboside k 90.9 0.15 5.3E-06 48.8 3.9 25 60-84 21-45 (207)
354 1sgw_A Putative ABC transporte 90.8 0.096 3.3E-06 51.2 2.4 22 62-83 37-58 (214)
355 2ff7_A Alpha-hemolysin translo 90.8 0.1 3.4E-06 52.2 2.6 23 61-83 36-58 (247)
356 3n70_A Transport activator; si 90.8 0.3 1E-05 44.0 5.6 24 61-84 25-48 (145)
357 1ji0_A ABC transporter; ATP bi 90.7 0.095 3.3E-06 52.1 2.4 23 61-83 33-55 (240)
358 4a74_A DNA repair and recombin 90.7 0.13 4.5E-06 49.7 3.3 23 61-83 26-48 (231)
359 2vhj_A Ntpase P4, P4; non- hyd 90.7 0.29 9.9E-06 50.9 6.0 23 61-83 124-146 (331)
360 2ghi_A Transport protein; mult 90.6 0.11 3.6E-06 52.5 2.6 23 61-83 47-69 (260)
361 3umf_A Adenylate kinase; rossm 90.6 0.19 6.5E-06 49.2 4.3 28 58-85 27-54 (217)
362 2zu0_C Probable ATP-dependent 90.6 0.12 4.1E-06 52.3 2.9 23 61-83 47-69 (267)
363 1qf9_A UMP/CMP kinase, protein 90.6 0.2 7E-06 46.8 4.4 26 60-85 6-31 (194)
364 2rhm_A Putative kinase; P-loop 90.5 0.18 6.1E-06 47.4 4.0 26 60-85 5-30 (193)
365 1jjv_A Dephospho-COA kinase; P 90.5 0.13 4.6E-06 49.1 3.1 22 61-82 3-24 (206)
366 1uf9_A TT1252 protein; P-loop, 90.5 0.19 6.5E-06 47.6 4.2 24 60-83 8-31 (203)
367 2olj_A Amino acid ABC transpor 90.5 0.11 3.6E-06 52.6 2.4 23 61-83 51-73 (263)
368 2chg_A Replication factor C sm 90.4 0.52 1.8E-05 44.6 7.3 24 60-83 38-61 (226)
369 2ehv_A Hypothetical protein PH 90.4 0.13 4.5E-06 50.4 3.1 22 61-82 31-52 (251)
370 2jeo_A Uridine-cytidine kinase 90.4 0.17 5.7E-06 50.2 3.8 26 60-85 25-50 (245)
371 1fnn_A CDC6P, cell division co 90.3 0.76 2.6E-05 48.0 9.1 24 61-84 45-68 (389)
372 2qi9_C Vitamin B12 import ATP- 90.3 0.11 3.8E-06 52.0 2.4 23 61-83 27-49 (249)
373 3fb4_A Adenylate kinase; psych 90.3 0.16 5.6E-06 48.9 3.5 24 62-85 2-25 (216)
374 1vpl_A ABC transporter, ATP-bi 90.3 0.11 3.8E-06 52.2 2.4 23 61-83 42-64 (256)
375 1via_A Shikimate kinase; struc 90.2 0.16 5.5E-06 47.2 3.3 24 62-85 6-29 (175)
376 3dl0_A Adenylate kinase; phosp 90.2 0.17 5.9E-06 48.7 3.7 24 62-85 2-25 (216)
377 2c95_A Adenylate kinase 1; tra 90.2 0.21 7.1E-06 47.0 4.1 26 60-85 9-34 (196)
378 3cm0_A Adenylate kinase; ATP-b 90.2 0.17 6E-06 47.3 3.6 25 61-85 5-29 (186)
379 1kht_A Adenylate kinase; phosp 90.1 0.18 6.3E-06 47.1 3.7 25 61-85 4-28 (192)
380 2ixe_A Antigen peptide transpo 90.1 0.12 4.2E-06 52.3 2.6 23 61-83 46-68 (271)
381 3fgn_A Dethiobiotin synthetase 90.1 1.3 4.6E-05 44.1 10.2 65 118-182 126-197 (251)
382 3lnc_A Guanylate kinase, GMP k 90.1 0.1 3.4E-06 51.2 1.9 24 60-83 27-51 (231)
383 2yz2_A Putative ABC transporte 90.0 0.12 4E-06 52.3 2.4 23 61-83 34-56 (266)
384 3tqc_A Pantothenate kinase; bi 90.0 0.2 6.8E-06 52.1 4.1 26 58-83 90-115 (321)
385 1byi_A Dethiobiotin synthase; 90.0 1.3 4.5E-05 42.5 9.9 67 118-184 108-180 (224)
386 2ihy_A ABC transporter, ATP-bi 89.9 0.13 4.5E-06 52.4 2.6 23 61-83 48-70 (279)
387 2nq2_C Hypothetical ABC transp 89.9 0.12 4.2E-06 51.8 2.4 22 62-83 33-54 (253)
388 1tev_A UMP-CMP kinase; ploop, 89.9 0.19 6.7E-06 47.0 3.6 25 61-85 4-28 (196)
389 1odf_A YGR205W, hypothetical 3 89.9 0.21 7.1E-06 51.2 4.1 25 59-83 30-54 (290)
390 4e22_A Cytidylate kinase; P-lo 89.8 0.22 7.5E-06 49.6 4.2 26 60-85 27-52 (252)
391 2gza_A Type IV secretion syste 89.8 0.14 4.9E-06 54.1 2.9 23 61-83 176-198 (361)
392 2b8t_A Thymidine kinase; deoxy 89.8 0.22 7.5E-06 49.0 4.0 42 144-185 89-130 (223)
393 1rz3_A Hypothetical protein rb 89.8 0.23 8E-06 47.5 4.1 24 60-83 22-45 (201)
394 2pt7_A CAG-ALFA; ATPase, prote 89.7 1.1 3.9E-05 46.5 9.7 24 61-84 172-195 (330)
395 1hqc_A RUVB; extended AAA-ATPa 89.7 1.3 4.5E-05 45.1 10.1 24 61-84 39-62 (324)
396 3kta_A Chromosome segregation 89.7 0.19 6.6E-06 46.9 3.4 24 62-85 28-51 (182)
397 1sxj_A Activator 1 95 kDa subu 89.6 0.86 2.9E-05 50.4 9.2 26 60-85 77-102 (516)
398 1zd8_A GTP:AMP phosphotransfer 89.4 0.24 8.2E-06 48.2 4.0 26 60-85 7-32 (227)
399 2bwj_A Adenylate kinase 5; pho 89.4 0.23 7.9E-06 46.8 3.8 25 61-85 13-37 (199)
400 1sq5_A Pantothenate kinase; P- 89.3 0.24 8.3E-06 51.0 4.1 24 60-83 80-103 (308)
401 1u0l_A Probable GTPase ENGC; p 89.3 0.15 5E-06 52.5 2.4 24 61-84 170-193 (301)
402 3fvq_A Fe(3+) IONS import ATP- 89.2 0.18 6E-06 53.4 3.0 23 61-83 31-53 (359)
403 1uj2_A Uridine-cytidine kinase 89.2 0.24 8.3E-06 49.2 3.9 27 59-85 21-47 (252)
404 2vp4_A Deoxynucleoside kinase; 89.1 0.18 6.3E-06 49.4 2.9 26 58-83 18-43 (230)
405 1zuh_A Shikimate kinase; alpha 89.1 0.23 8E-06 45.7 3.5 27 60-86 7-33 (168)
406 2axn_A 6-phosphofructo-2-kinas 89.1 0.25 8.6E-06 54.9 4.3 40 143-182 117-156 (520)
407 1zak_A Adenylate kinase; ATP:A 89.1 0.24 8.4E-06 48.0 3.8 25 61-85 6-30 (222)
408 1nn5_A Similar to deoxythymidy 89.1 0.28 9.5E-06 46.9 4.1 24 60-83 9-32 (215)
409 2plr_A DTMP kinase, probable t 89.1 0.25 8.5E-06 47.0 3.8 25 61-85 5-29 (213)
410 2bbs_A Cystic fibrosis transme 89.1 0.17 5.8E-06 51.8 2.7 23 61-83 65-87 (290)
411 2v54_A DTMP kinase, thymidylat 89.1 0.27 9.1E-06 46.7 3.9 23 61-83 5-27 (204)
412 3tui_C Methionine import ATP-b 89.0 0.18 6.1E-06 53.4 2.9 23 61-83 55-77 (366)
413 2pjz_A Hypothetical protein ST 89.0 0.17 5.8E-06 51.1 2.6 22 62-83 32-53 (263)
414 3izy_P Translation initiation 89.0 1.5 5E-05 48.9 10.4 102 241-351 427-534 (537)
415 1aky_A Adenylate kinase; ATP:A 89.0 0.26 8.9E-06 47.7 3.9 26 60-85 4-29 (220)
416 1jbk_A CLPB protein; beta barr 89.0 0.28 9.7E-06 45.2 4.0 24 60-83 43-66 (195)
417 2ewv_A Twitching motility prot 88.9 0.21 7.1E-06 53.1 3.4 24 60-83 136-159 (372)
418 2vli_A Antibiotic resistance p 88.9 0.2 6.9E-06 46.6 2.9 25 61-85 6-30 (183)
419 1lw7_A Transcriptional regulat 88.9 0.18 6.1E-06 53.3 2.8 25 60-84 170-194 (365)
420 2cdn_A Adenylate kinase; phosp 88.8 0.31 1.1E-05 46.4 4.2 26 60-85 20-45 (201)
421 3nh6_A ATP-binding cassette SU 88.8 0.11 3.9E-06 53.6 1.2 24 60-83 80-103 (306)
422 2pt5_A Shikimate kinase, SK; a 88.8 0.26 8.9E-06 45.2 3.6 24 62-85 2-25 (168)
423 1e6c_A Shikimate kinase; phosp 88.6 0.24 8.3E-06 45.6 3.2 25 61-85 3-27 (173)
424 2wwf_A Thymidilate kinase, put 88.6 0.3 1E-05 46.6 4.0 24 60-83 10-33 (212)
425 1z47_A CYSA, putative ABC-tran 88.6 0.2 6.8E-06 52.9 2.9 23 61-83 42-64 (355)
426 1sxj_E Activator 1 40 kDa subu 88.5 1.4 4.9E-05 45.4 9.5 24 60-83 36-59 (354)
427 1gtv_A TMK, thymidylate kinase 88.5 0.13 4.5E-06 49.3 1.4 22 62-83 2-23 (214)
428 2yyz_A Sugar ABC transporter, 88.5 0.2 6.9E-06 52.9 2.9 23 61-83 30-52 (359)
429 2iyv_A Shikimate kinase, SK; t 88.5 0.24 8.1E-06 46.4 3.1 25 62-86 4-28 (184)
430 3tlx_A Adenylate kinase 2; str 88.4 0.3 1E-05 48.4 3.9 26 60-85 29-54 (243)
431 1e4v_A Adenylate kinase; trans 88.4 0.28 9.7E-06 47.2 3.7 24 62-85 2-25 (214)
432 3syl_A Protein CBBX; photosynt 88.4 0.83 2.8E-05 46.3 7.4 26 59-84 66-91 (309)
433 2it1_A 362AA long hypothetical 88.4 0.21 7.3E-06 52.8 2.9 23 61-83 30-52 (362)
434 3rlf_A Maltose/maltodextrin im 88.3 0.22 7.4E-06 53.1 2.9 23 61-83 30-52 (381)
435 2oap_1 GSPE-2, type II secreti 88.2 0.2 6.7E-06 55.6 2.6 23 61-83 261-283 (511)
436 2pbr_A DTMP kinase, thymidylat 88.2 0.3 1E-05 45.7 3.6 22 62-83 2-23 (195)
437 1gvn_B Zeta; postsegregational 88.2 0.31 1.1E-05 49.7 4.0 25 60-84 33-57 (287)
438 1g29_1 MALK, maltose transport 88.1 0.22 7.5E-06 52.9 2.9 23 61-83 30-52 (372)
439 1v43_A Sugar-binding transport 88.1 0.22 7.6E-06 52.8 2.9 23 61-83 38-60 (372)
440 2ze6_A Isopentenyl transferase 88.1 0.28 9.7E-06 48.9 3.5 24 62-85 3-26 (253)
441 2x8a_A Nuclear valosin-contain 87.9 0.4 1.4E-05 48.5 4.6 24 61-84 45-68 (274)
442 2z0h_A DTMP kinase, thymidylat 87.9 0.29 9.9E-06 46.1 3.3 22 62-83 2-23 (197)
443 1ak2_A Adenylate kinase isoenz 87.9 0.35 1.2E-05 47.3 4.0 25 60-84 16-40 (233)
444 3nwj_A ATSK2; P loop, shikimat 87.8 0.28 9.5E-06 49.1 3.3 25 61-85 49-73 (250)
445 2r8r_A Sensor protein; KDPD, P 87.7 0.87 3E-05 44.8 6.7 23 61-83 7-29 (228)
446 1ixz_A ATP-dependent metallopr 87.7 0.32 1.1E-05 48.1 3.6 23 61-83 50-72 (254)
447 1f2t_A RAD50 ABC-ATPase; DNA d 87.6 0.32 1.1E-05 44.5 3.2 23 62-84 25-47 (149)
448 2pez_A Bifunctional 3'-phospho 87.4 0.34 1.2E-05 45.1 3.5 24 60-83 5-28 (179)
449 1p9r_A General secretion pathw 87.3 0.31 1.1E-05 52.6 3.5 24 61-84 168-191 (418)
450 3gd7_A Fusion complex of cysti 87.3 0.28 9.4E-06 52.5 3.0 23 61-83 48-70 (390)
451 2w0m_A SSO2452; RECA, SSPF, un 87.2 0.35 1.2E-05 46.6 3.5 23 61-83 24-46 (235)
452 1vht_A Dephospho-COA kinase; s 87.2 0.4 1.4E-05 46.2 3.9 22 61-82 5-26 (218)
453 3d31_A Sulfate/molybdate ABC t 87.0 0.2 6.7E-06 52.8 1.6 23 61-83 27-49 (348)
454 3hr8_A Protein RECA; alpha and 86.9 0.37 1.3E-05 50.8 3.7 23 61-83 62-84 (356)
455 2p65_A Hypothetical protein PF 86.7 0.34 1.2E-05 44.6 3.0 24 60-83 43-66 (187)
456 3bgw_A DNAB-like replicative h 86.6 0.3 1E-05 53.1 2.9 24 61-84 198-221 (444)
457 2xb4_A Adenylate kinase; ATP-b 86.4 0.42 1.4E-05 46.5 3.6 24 62-85 2-25 (223)
458 1xwi_A SKD1 protein; VPS4B, AA 86.4 1.8 6.3E-05 44.6 8.7 26 59-84 44-69 (322)
459 3io5_A Recombination and repai 86.3 2.4 8.2E-05 43.9 9.3 22 62-83 30-51 (333)
460 1iy2_A ATP-dependent metallopr 86.3 0.42 1.4E-05 48.1 3.6 24 61-84 74-97 (278)
461 3be4_A Adenylate kinase; malar 86.2 0.47 1.6E-05 45.9 3.8 25 61-85 6-30 (217)
462 2zr9_A Protein RECA, recombina 86.1 0.32 1.1E-05 51.2 2.7 24 60-83 61-84 (349)
463 3r20_A Cytidylate kinase; stru 86.1 0.46 1.6E-05 47.0 3.7 26 60-85 9-34 (233)
464 1in4_A RUVB, holliday junction 86.1 0.42 1.4E-05 49.7 3.6 24 61-84 52-75 (334)
465 1q3t_A Cytidylate kinase; nucl 86.0 0.51 1.7E-05 46.3 4.0 27 59-85 15-41 (236)
466 2f6r_A COA synthase, bifunctio 86.0 0.47 1.6E-05 48.1 3.8 24 59-82 74-97 (281)
467 2w58_A DNAI, primosome compone 85.9 0.47 1.6E-05 45.0 3.6 24 61-84 55-78 (202)
468 1lv7_A FTSH; alpha/beta domain 85.9 0.53 1.8E-05 46.6 4.1 25 60-84 45-69 (257)
469 2grj_A Dephospho-COA kinase; T 85.8 0.5 1.7E-05 45.2 3.7 28 58-85 10-37 (192)
470 1oxx_K GLCV, glucose, ABC tran 85.8 0.19 6.6E-06 52.9 0.8 23 61-83 32-54 (353)
471 2npi_A Protein CLP1; CLP1-PCF1 85.8 0.4 1.4E-05 52.4 3.3 23 61-83 139-161 (460)
472 2bjv_A PSP operon transcriptio 85.8 1.3 4.3E-05 44.0 6.9 24 61-84 30-53 (265)
473 1m7g_A Adenylylsulfate kinase; 85.7 0.52 1.8E-05 45.3 3.8 24 60-83 25-48 (211)
474 1cr0_A DNA primase/helicase; R 85.7 0.44 1.5E-05 48.4 3.4 23 61-83 36-58 (296)
475 3qf7_A RAD50; ABC-ATPase, ATPa 85.6 0.41 1.4E-05 50.6 3.2 23 62-84 25-47 (365)
476 2obl_A ESCN; ATPase, hydrolase 85.6 0.47 1.6E-05 49.8 3.7 23 61-83 72-94 (347)
477 1q57_A DNA primase/helicase; d 85.4 0.32 1.1E-05 53.7 2.4 24 61-84 243-266 (503)
478 3euj_A Chromosome partition pr 85.3 0.43 1.5E-05 52.4 3.2 24 61-84 30-53 (483)
479 2cvh_A DNA repair and recombin 85.2 0.46 1.6E-05 45.4 3.2 22 61-82 21-42 (220)
480 2z43_A DNA repair and recombin 85.2 2.7 9.2E-05 43.3 9.3 24 60-83 107-130 (324)
481 3lh2_S 4E10_1VI7A_S0_002_N (T8 85.1 0.55 1.9E-05 37.7 3.1 56 464-522 10-70 (76)
482 3ake_A Cytidylate kinase; CMP 85.0 0.53 1.8E-05 44.6 3.5 24 62-85 4-27 (208)
483 1xp8_A RECA protein, recombina 84.6 1.5 5.1E-05 46.4 7.0 24 60-83 74-97 (366)
484 4eaq_A DTMP kinase, thymidylat 84.5 0.72 2.5E-05 45.2 4.3 26 59-84 25-50 (229)
485 2dpy_A FLII, flagellum-specifi 84.4 0.56 1.9E-05 50.9 3.7 23 61-83 158-180 (438)
486 1n0w_A DNA repair protein RAD5 84.4 0.53 1.8E-05 45.7 3.2 23 61-83 25-47 (243)
487 3pvs_A Replication-associated 84.1 2 6.9E-05 46.6 8.0 25 60-84 50-74 (447)
488 3co5_A Putative two-component 84.0 0.95 3.2E-05 40.6 4.5 23 61-83 28-50 (143)
489 4edh_A DTMP kinase, thymidylat 83.9 1.9 6.4E-05 41.8 6.9 23 61-83 7-29 (213)
490 3cmu_A Protein RECA, recombina 83.9 1.5 5.1E-05 55.9 7.6 26 59-84 1426-1451(2050)
491 1svm_A Large T antigen; AAA+ f 83.9 0.7 2.4E-05 49.1 4.1 24 60-83 169-192 (377)
492 1qvr_A CLPB protein; coiled co 83.9 1.9 6.5E-05 50.8 8.3 25 59-83 190-214 (854)
493 3b5x_A Lipid A export ATP-bind 83.6 0.5 1.7E-05 53.2 3.0 24 60-83 369-392 (582)
494 3b60_A Lipid A export ATP-bind 83.6 0.47 1.6E-05 53.4 2.8 23 61-83 370-392 (582)
495 2orw_A Thymidine kinase; TMTK, 83.6 1.6 5.3E-05 41.3 6.0 40 144-183 76-115 (184)
496 1v5w_A DMC1, meiotic recombina 83.4 4.8 0.00017 41.8 10.3 24 60-83 122-145 (343)
497 3t15_A Ribulose bisphosphate c 83.3 1.1 3.8E-05 45.6 5.2 27 58-84 34-60 (293)
498 3h4m_A Proteasome-activating n 83.0 0.82 2.8E-05 45.8 4.1 25 60-84 51-75 (285)
499 2qz4_A Paraplegin; AAA+, SPG7, 83.0 0.81 2.8E-05 45.0 4.0 26 59-84 38-63 (262)
500 1yqt_A RNAse L inhibitor; ATP- 83.0 0.58 2E-05 52.2 3.1 24 60-83 47-70 (538)
No 1
>3e3x_A BIPA; MCSG,PSI2, structural genomics, protein struct initiative, midwest center for structural genomics, GTP-BIN nucleotide-binding; HET: MLZ MLY; 1.95A {Vibrio parahaemolyticus}
Probab=100.00 E-value=1.4e-108 Score=857.05 Aligned_cols=322 Identities=41% Similarity=0.670 Sum_probs=273.1
Q ss_pred EEcCcCCCccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCC
Q 006068 337 SVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAE 415 (662)
Q Consensus 337 ai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~ 415 (662)
+++|++++.+|||||+.+++.+||++++++|+++|+|.|+++||+|++|+++|+++|.++|.|++++||+|+|+++ +++
T Consensus 2 av~Gl~~~~iGDTl~~~~~p~~L~~~~~~ePvvs~~i~p~~~p~ag~d~~~vt~~kL~~aL~kl~~eDpsL~v~~~~~t~ 81 (332)
T 3e3x_A 2 NATGLGELKISDTICAQNAVEALPALSVDEPTVTMTFQVNTSPFAGXEGXFVTSRNILERLEKELVHNVALRVEQTDDPD 81 (332)
T ss_dssp ---------------------------CCCCCEEEEEECCCSTTTTSSCSBCSHHHHHHHHHHHHHHCTTCEEEECSSTT
T ss_pred CccCCCCCccCCEEcCCCCcccCCCCCCCCCEEEEEEEECCCCccccccccchHHHHHHHHHHHhccCCEEEEEEcCCCC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999999999998 778
Q ss_pred eEEEEecChhhHHHHHHHHHhcCeEEEEeCCEEEEEEecCeeeecceeEEEEE----chhHHHHhhccceEEEeecccc-
Q 006068 416 TYEVQGRGELQLGILIENMRREGFELSVSPPKVMYKTENGVKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW- 490 (662)
Q Consensus 416 ~~~v~G~GeLhL~vl~e~Lrreg~ev~vs~P~V~yrE~~g~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~- 490 (662)
+|+|+|||||||+|++|+|||||+|+.+++|+|+|||.+|+++|||++++|+| +|+||++|++|||+| .+|+
T Consensus 82 ~~~v~G~GELHLeIl~ErLrrEg~ev~v~~P~V~YrEt~G~llEPi~~v~I~vPee~~G~Vm~~L~~RRG~i---~~m~~ 158 (332)
T 3e3x_A 82 KFRVSGRGELHLSILIENMRREGFELAVSRPEVIIXEEDGQLMEPFETVTIDVMEEHQGGIMENIGLRXGEL---XDMAP 158 (332)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHTBCEEECCCEECCEEETTEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE---EEEEE
T ss_pred eEEEEeeCHHHHHHHHHHHHhcCceEEEeCCEEEEEEECCEEECcEEEEEEEECHHHHHHHHHHHHhhcccc---cCceE
Confidence 89999999999999999999999999999999999999999999999999999 999999999999999 9998
Q ss_pred -C-CEEEEEEEeccccccchhhhccccceeeEEeeeeecceeec-cCCCCCccceeEEEccCcchhhhhhcCcccccccc
Q 006068 491 -G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH-RGLLGNVRKGVLVSMGFGSITAHALMSLEPRGILF 567 (662)
Q Consensus 491 -~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~-~g~~~~~~~g~~~~~~~g~~~~~~~~~~~~~g~~~ 567 (662)
+ ++++|+|.+|++||+||+++|+|+|+|+|+|++.|+||+|+ ||+++.|.||+|||+++|++|+|||++||+||+||
T Consensus 159 ~~~g~~~I~~~vPl~el~Gy~~eLrS~T~G~g~~~~~F~~Y~p~~pg~i~~r~~g~lv~~~~g~~~~y~l~~~~~rg~~f 238 (332)
T 3e3x_A 159 DGKGRVRMDFIMPSRGLIGFQTEFMTLTSGSGLLYHTFDHYGPHXGGNIGQRVNGVLIANAAGKALTNALFNLQERGRLF 238 (332)
T ss_dssp CSSSEEEEEEEEEHHHHTTHHHHHHHHTTTCCEEEEEEEEEEECCCCSCSCCCCCEEEESSCEECCHHHHHHHTTSEEES
T ss_pred CCCCeEEEEEEEChHHhhhHHHHhhhhCCCcEEEEEEecCceEcCCCccccccCceEEEcCCCcEeHhhhhhHHhhceEE
Confidence 4 79999999999999999999999999999999999999999 79999999999999999999999999999999999
Q ss_pred ccCCCcccCceEEeecCCCCCceeeccccccccccccCCCCceeeeCCCcccCHHHHHccccCCeeEEecCCceEeeecc
Q 006068 568 VPPGTETYDGMIIGEHSRDTDLDVNPVRAKELSNVRAAGKDENVKLTPPRLMTLEEAIGYVASDELIEVTPKAIRLRKRY 647 (662)
Q Consensus 568 ~~~~~~~y~g~~~g~~~~~~d~~~n~~~~k~~~~~r~~~~~~~~~~~~~~~~~~e~~~~~~~~de~~e~tp~~~r~rk~~ 647 (662)
|+||++||+|||||||+|+|||+|||||+||||||||||+|++++|+||+.||||||||||+|||||||||++|||||++
T Consensus 239 v~pg~~vy~gmivg~~~r~~dl~vn~~k~k~ltn~r~~~~d~~~~l~~~~~~~le~~~~~i~~de~vevtp~~ir~rk~~ 318 (332)
T 3e3x_A 239 IGHGVEVYEGMVIGIHSRDNDLTVNALKGKQLTNVRASGTDDAQVLTPPIVMTLEQALEFIDDDELVEVTPESIRIRKXF 318 (332)
T ss_dssp CCTTCEECTTEEEEEESSSSCEEECSCC--------------CCCCCCCCCCCHHHHHHHCCTTEEEEECSSCEEEEESS
T ss_pred ecCCCeEECCeEEEecCCcCCcEEecccccccccccccCCccceEecCCcccCHHHHHhhhcCCeeEEEcCceEEEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhhhhhhcCCC
Q 006068 648 LDVNKRKTMSKRPK 661 (662)
Q Consensus 648 ~~~~~~~~~~~~~~ 661 (662)
||+++|||++|++|
T Consensus 319 l~~~~r~~~~~~~~ 332 (332)
T 3e3x_A 319 LTESDRXRASRSAK 332 (332)
T ss_dssp CSHHHHHHHC----
T ss_pred CChhHhHHhhhcCC
Confidence 99999999888765
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=100.00 E-value=4.5e-88 Score=787.26 Aligned_cols=445 Identities=28% Similarity=0.399 Sum_probs=378.4
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCC------CCccccccccccccccceeEeeeEEEEEec-------CeeEEE
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGAD------IPHERAMDSISLERERGITIASKVTGISWR-------ENELNM 123 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~------~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-------~~~ini 123 (662)
.+++|||+|+||+|||||||+++||+.+|.. ....+++|+.++|++|||||.++..++.|+ ++.|||
T Consensus 10 ~~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 10 INRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred hHHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 4689999999999999999999999998741 234689999999999999999999999996 689999
Q ss_pred EeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH
Q 006068 124 VDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (662)
Q Consensus 124 IDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~ 203 (662)
||||||.||..|++++|+++|+||+||||.+|+++||+.+|++|.+.++|+|+||||||++.+++.. +.+++.+.+.
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~a~~~~---~~~ei~~~l~ 166 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQGANFLR---VVEQIKKRLG 166 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTTCCHHH---HHHHHHHHHC
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccCccHHH---HHHHhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999988744 3333333221
Q ss_pred h----------------------------------------------------------------------------cCC
Q 006068 204 N----------------------------------------------------------------------------LGA 207 (662)
Q Consensus 204 ~----------------------------------------------------------------------------~g~ 207 (662)
. ...
T Consensus 167 ~~~~~~~~pi~~~~~~~g~vd~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~l~~~~~~~~~~ 246 (709)
T 4fn5_A 167 HTPVPVQLAIGAEENFVGQVDLIKMKAIYWNDDDKGMTYREEEIPAELKDLAEEWRSSMVEAAAEANEELMNKYLEEGEL 246 (709)
T ss_dssp SCEEESEEEESSSTTCCEEEETTTTEEEEEEC--CCCEEEECCCCHHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHSCC
T ss_pred cceeeeecccCchhccceEEEEeeeeEEEeecccCCceeccccccHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCc
Confidence 0 000
Q ss_pred CC------------cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC-------------------
Q 006068 208 TD------------EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK------------------- 256 (662)
Q Consensus 208 ~~------------~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~------------------- 256 (662)
.. ...-+|++++||.++. |+..||++|++++|+|.
T Consensus 247 ~~~~~~~~l~~~~~~~~~~pv~~gsa~~~~--------------gv~~lLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~ 312 (709)
T 4fn5_A 247 SEAEIKEGLRLRTLACEIVPAVCGSSFKNK--------------GVPLVLDAVIDYLPAPTEIPAIKGVSPDDETVEDER 312 (709)
T ss_dssp CHHHHHHHHHHHHHTTSCEEEEECBTTTTB--------------THHHHHHHHHHHSCCTTSSCCEECBCCC-CCSCCEE
T ss_pred cHHHHHHHHHHhhhhceeeeeeeeecccCC--------------chHHHHHHHHhhCCCCcccccccccCCccccccccc
Confidence 00 0012689999999998 99999999999999994
Q ss_pred -CCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCE
Q 006068 257 -ASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDI 335 (662)
Q Consensus 257 -~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdI 335 (662)
.++++||.++|||+.++++.|+++++|||||+|++||.|++...+ +.++|++|+.+.|.+++++++|.||||
T Consensus 313 ~~d~~~pl~~~VfK~~~d~~~G~la~~RV~sGtl~~G~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI 385 (709)
T 4fn5_A 313 HADDNEPFSSLAFKIATDPFVGTLTFARVYSGVLSSGDSVLNSVKG-------KKERVGRMVQMHANQREEIKEVRAGDI 385 (709)
T ss_dssp CSCTTSCCEEEEEECCCBTTTBCCCEEEEEESCEETTCBCBCTTTC-------CCCBCCCEECCCSSCCCEESEECTTCE
T ss_pred cCCccCcceEEEEEeecccCCCceEEEeccCCCCCCCCEEEEecCC-------cEEeecceeEeecceeeEeeeecCCCe
Confidence 467899999999999999999999999999999999999877532 457899999999999999999999999
Q ss_pred EEEcCcCCCccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CC
Q 006068 336 ISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MA 414 (662)
Q Consensus 336 vai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~ 414 (662)
|+|.|++++.+|||||+.+.+..++++++++|++++++.|.++ .|..||.++|.|+.++||+|+++.+ ++
T Consensus 386 v~i~Gl~~~~~gdTl~~~~~~~~~~~~~~~~Pvv~vavep~~~---------~d~~kL~~~L~kL~~eDPsl~v~~~eet 456 (709)
T 4fn5_A 386 AALIGMKDVTTGDTLCSIEKPIILERMDFPEPVISVAVEPKTK---------ADQEKMGIALGKLAQEDPSFRVKTDEES 456 (709)
T ss_dssp EEECSCSSCCTTCEEECSSSCCBCC----CCCSEEEEECBSST---------TTHHHHHHHHHHHHHHCTTCEEEEETTT
T ss_pred eeecCCCcCccCCEecCCCccccCCCCCCCCcceEEEEecCCH---------HHhhhhHHHHHHHHHhCCeEEEEEecCC
Confidence 9999999999999999999999999999999999999999875 6889999999999999999999975 78
Q ss_pred CeEEEEecChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-ecC-------------------------------------
Q 006068 415 ETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-ENG------------------------------------- 455 (662)
Q Consensus 415 ~~~~v~G~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~g------------------------------------- 455 (662)
++++|+|+|||||+|++++|||+ |+|+.+++|+|+||| +.+
T Consensus 457 ge~vi~g~GELHLei~l~rLr~e~gvev~vs~P~V~yrETi~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~e~g~~ 536 (709)
T 4fn5_A 457 GQTIISGMGELHLDIIVDRMKREFGVEANIGKPQVAYRETITKDNVEIEGKFVRQSGGRGQFGHCWIRFSAADVDEKGNI 536 (709)
T ss_dssp TEEEEEESCHHHHHHHHHHHHTTTCCCBCCBCCCCCCEEECCCCSEEEEEEEEEEETTEEEEEEEEEEEECCCBC-CCCB
T ss_pred CcEEEEEECHHHHHHHHHHHHHHhCceEEEeeceEEEEEEEecCCceecceeeeccCCcCcceeEEEEEeeccccccCCC
Confidence 88999999999999999999987 999999999999999 310
Q ss_pred --------------------------------------------------------------------------------
Q 006068 456 -------------------------------------------------------------------------------- 455 (662)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (662)
T Consensus 537 ~~~~~f~~~~~~~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~a~~~a~p 616 (709)
T 4fn5_A 537 TEGLVFENEVVGGVVPKEYIPAIQKGIEEQMKNGVVAGYPLIGLKATVFDGSYHDVDSNEMAFKIAASMATKQLAQKGGG 616 (709)
T ss_dssp CCEEEEEECC-CCSSCGGGHHHHHHHHHHHHHHCSSSSCCBSEEEEEEEECCCCTTTBCHHHHHHHHHHHHHTHHHHSCC
T ss_pred cCceEEecccccccCCHHHHHHHHHHHHHHHhcCcccCCceeeeEEEEEEccccCCCCChHHHHHHHHHHHHHHHHHCCC
Confidence
Q ss_pred eeeecceeEEEEE----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecce
Q 006068 456 VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKY 529 (662)
Q Consensus 456 ~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y 529 (662)
++||||+.++|.| +|+||++|++|||+| ++|+ ++...|+|.+|++|++||.++||++|+|+|+|++.|+||
T Consensus 617 ~LlEPi~~veI~~p~~~~G~V~~~L~~RRG~i---~~~~~~~~~~~i~a~vPv~E~~gf~~~LRs~T~G~a~~~~~F~~y 693 (709)
T 4fn5_A 617 KVLEPIMKVEVVTPEDYMGDVMGDLNRRRGLI---QGMEDTVSGKVIRAEVPLGEMFGYATDVRSMSQGRASYSMEFSKY 693 (709)
T ss_dssp EEEEEEEEEEEEEETTTHHHHHHHHGGGTCEE---EEEEECSSEEEEEEEEESGGGTTHHHHHHHHTTTCCEEECCEEEE
T ss_pred EEECceEEEEEEECHHHHHHHHHHHHhcCCEE---eceEecCCCEEEEEEecHHHhhCHHHHHHhhCCCeEEEEEEECCc
Confidence 2579999999999 999999999999999 9998 578889999999999999999999999999999999999
Q ss_pred eeccCCCC
Q 006068 530 EKHRGLLG 537 (662)
Q Consensus 530 ~~~~g~~~ 537 (662)
+++||++.
T Consensus 694 ~~vp~~~~ 701 (709)
T 4fn5_A 694 AEAPSNIV 701 (709)
T ss_dssp EECCHHHH
T ss_pred ccCCcCHH
Confidence 99998863
No 3
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=100.00 E-value=3.5e-89 Score=786.87 Aligned_cols=442 Identities=24% Similarity=0.285 Sum_probs=398.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF 132 (662)
+||||+|+||+|||||||+++||+.+|... ...+++|++++|++|||||.++..++.|++++|||||||||.||
T Consensus 1 kIRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 1 KIINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 589999999999999999999999999643 23689999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH---------
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA--------- 203 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~--------- 203 (662)
..+++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||++.+++... .+++.+.+.
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a~~~~~---~~~i~~~l~~~~~~~~~~ 157 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGIDLSTV---YQDIKEKLSAEIVIKQKV 157 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSCCSHHH---HHHHHHTTCCCCCCCCCC
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccCCHHHH---HHHHHHHhCCCcccccee
Confidence 99999999999999999999999999999999999999999999999999999887442 222222110
Q ss_pred ---------------------------------hcCCCCc------------CCCccEEEcccccCccCCccCCCCCCCc
Q 006068 204 ---------------------------------NLGATDE------------QLDFPVLYASAKEGWASSTFTKDPPADV 238 (662)
Q Consensus 204 ---------------------------------~~g~~~~------------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~ 238 (662)
....... ..-+|++++||+++.
T Consensus 158 ~~~~~~~~~~~~~~~~~e~~~e~~d~l~e~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~~gSa~~~~------------- 224 (638)
T 3j25_A 158 ELYPNVCVTNFTESEQWDTVIEGNDDLLEKYMSGKSLEALELEQEESIRFQNCSLFPLYHGSAKSNI------------- 224 (638)
T ss_dssp CSCGGGCCCCCCCHHHHHHHHHHHCHHHHHHHHHCCCCSHHHHHHHHHHHHHTSCCCCCCCCSTTCC-------------
T ss_pred EeeccccccccchhhhhhhhhcccHHHHhhhccCCccchHHHHHHHhhhhcccccccccccccccCC-------------
Confidence 0000000 012799999999998
Q ss_pred cchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEe
Q 006068 239 RNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMK 318 (662)
Q Consensus 239 ~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~ 318 (662)
|+++||++|.+++|+|..+.++||.++|||+.+|++.|+++++|||||+|+.||.|++... .+.+|.+++.
T Consensus 225 -Gv~~LLd~i~~~~p~p~~~~~~~~~~~Vfk~~~d~~~G~la~~RV~sG~l~~g~~v~~~~~--------~~~~v~~l~~ 295 (638)
T 3j25_A 225 -GIDNLIEVITNKFYSSTHRGPSELCGNVFKIEYTKKRQRLAYIRLYSGVLHLRDSVRVSEK--------EKIKVTEMYT 295 (638)
T ss_dssp -SHHHHHHHHHHSCCCSGGGSCCCCCBEEBCCCCCSTTCCCCBCCBSSBCCCSCCCSSSCCC--------CCSSBCCCCS
T ss_pred -CchhHhhhhhccccCcccchhhhhcceeeeeeeeccCceEEEEEEEcCcccCCCccccccC--------cceeEEeeec
Confidence 9999999999999999998999999999999999999999999999999999999987642 3468999999
Q ss_pred ecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhh
Q 006068 319 KKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLM 398 (662)
Q Consensus 319 ~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~ 398 (662)
+.|.+++++++|.|||||+|.| ..+.+|||+++...+..++++++|+|++++++.|.+. .|..||.++|.
T Consensus 296 ~~g~~~~~v~~a~aGdIv~i~g-~~~~~~~tl~d~~~~~~~~~i~~p~Pv~~~aiep~~~---------~d~~kL~~aL~ 365 (638)
T 3j25_A 296 SINGELCKIDRAYSGEIVILQN-EFLKLNSVLGDTKLLPQRKKIENPHPLLQTTVEPSKP---------EQREMLLDALL 365 (638)
T ss_dssp SCCCCBSCCCTTBCCCCSCCCS-SSCSSEECSSSSSSGGGCSCCCCCCCCCCCEEECCSH---------HHHHHHHHHHH
T ss_pred ccccccccccccccceEEEEec-cccccCceecCCCCcccccCccCCCccceeeeccCCh---------HHHHHHHHHHH
Confidence 9999999999999999999988 6788999999988888889999999999999998764 68899999999
Q ss_pred hhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-ecC--------------------
Q 006068 399 SEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-ENG-------------------- 455 (662)
Q Consensus 399 k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~g-------------------- 455 (662)
++.++||+|+++.+ ++++++|+|||||||+|++++|||+ |+|+.+++|+|+||| +.+
T Consensus 366 kL~~eDPsl~v~~~~et~e~il~g~GeLHLei~~~rL~~efgvev~~~~P~V~yrEti~~~~~~~~~~~~~~~~~~~~v~ 445 (638)
T 3j25_A 366 EISDSDPLLRYYVDSTTHEIILSFLGKVQMEVISALLQEKYHVEIELKEPTVIYMERPLKNAEYTIHIEVPPNPFWASIG 445 (638)
T ss_dssp HHHHTCTTCCCCCCSSSSCCCCCCSSHHHHHHHHHHHTTTTCCCCEEECCCCCCCBCCCSCCEECCCCCSSSCCCCCCCC
T ss_pred HHhhcCCeeEEEecCCCceEEEccccHHHHHHHHHHHHHHhCCcEEEeCCceeEEEEecccceEEEEEecCCCCceEEEE
Confidence 99999999999987 6788999999999999999999987 999999999999998 210
Q ss_pred --------------------------------------------------------------------------------
Q 006068 456 -------------------------------------------------------------------------------- 455 (662)
Q Consensus 456 -------------------------------------------------------------------------------- 455 (662)
T Consensus 446 ~~~eP~~~~~g~~f~~~~~~~~~~~~~~~av~~g~~~~~~~Gl~g~pv~~v~v~l~dg~~h~~~s~~~~f~~a~~~a~~~ 525 (638)
T 3j25_A 446 LSVSPLPLGSGMQYESSVSLGYLNQSFQNAVMEGIRYGCEQGLYGWNVTDCKICFKYGLYYSPVSTPADFRMLAPIVLEQ 525 (638)
T ss_dssp EECCCCCSSCCCCCCCCCCSSSTTHHHHHHHHHHHHHHHHSSSSCCCCCSCCCCCCCCCCSSCSCCSHHHHHHHHHHHHH
T ss_pred EEEecccCCCCcEEEeeeecccchhhhhhHHhhhHHHHHhccccCCcccceEEEEEECcccCCCCCHHHHHHHHHHHHHH
Confidence
Q ss_pred -------eeeecceeEEEEE----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEe
Q 006068 456 -------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFM 522 (662)
Q Consensus 456 -------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~ 522 (662)
++||||++++|.| +|+||++|++|||+| ++|+ +++++|+|.+|++||+||+++|||+|+|+|+|
T Consensus 526 a~~~a~p~LLEPi~~veI~vP~~~~G~V~~~L~~RRG~i---~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~a~~ 602 (638)
T 3j25_A 526 VLKKAGTELLEPYLSFKIYAPQEYLSRAYNDAPKYCANI---VDTQLKNNEVILSGEIPARCIQEYRSDLTFFTNGRSVC 602 (638)
T ss_dssp HHHHHCCBCCCCCTTCEEEEETTTHHHHHHHHHHTTCCC---CCCCCCTTEEEEECCCSSCCHHHHHHHHHHTTTTCCEE
T ss_pred HHHHCCCEEEcCcEEEEEEECHHHHHHHHHHHHhCCcEE---eCeEecCCeEEEEEEECHHHhhCHHHHHHhhCCCcEEE
Confidence 1479999999999 999999999999999 9999 68999999999999999999999999999999
Q ss_pred eeeecceeeccCCCCC
Q 006068 523 HRAFLKYEKHRGLLGN 538 (662)
Q Consensus 523 ~~~f~~y~~~~g~~~~ 538 (662)
+++|+||+++||+...
T Consensus 603 ~~~f~~y~~vpgdp~~ 618 (638)
T 3j25_A 603 LTELKGYHVTTGEPVC 618 (638)
T ss_dssp ECCCCCCCCCCSCCSC
T ss_pred EEEECceEECCCCccc
Confidence 9999999999998643
No 4
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=100.00 E-value=6.8e-81 Score=724.26 Aligned_cols=446 Identities=30% Similarity=0.410 Sum_probs=399.6
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecC-------eeEE
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRE-------NELN 122 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-------~~in 122 (662)
..++++||+|+||+|||||||+++|++.++... ...+++|+.+.|+++|+|+......+.|++ +.++
T Consensus 6 ~~~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 6 PIARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred CcccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEE
Confidence 345789999999999999999999998876422 235789999999999999999999999988 9999
Q ss_pred EEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 006068 123 MVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLF 202 (662)
Q Consensus 123 iIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~ 202 (662)
|||||||.||..++.++++.+|++|+|||+.+|++.||..+|+.+...++|+++|+||+|+..+++.+ +.+++.+.+
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~~~~~---~~~~l~~~l 162 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGANFLK---VVNQIKTRL 162 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccccHHH---HHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999998876533 333333222
Q ss_pred Hh---------------------------------cCCC----------------------------C------------
Q 006068 203 AN---------------------------------LGAT----------------------------D------------ 209 (662)
Q Consensus 203 ~~---------------------------------~g~~----------------------------~------------ 209 (662)
.. .|.. +
T Consensus 163 ~~~~~~~~~Pi~~~~~f~g~~dl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~e~~ae~dd~l~e~~l~~~~ 242 (704)
T 2rdo_7 163 GANPVPLQLAIGAEEHFTGVVDLVKMKAINWNDADQGVTFEYEDIPADMVELANEWHQNLIESAAEASEELMEKYLGGEE 242 (704)
T ss_pred CCCceeEEccccccccccceeehhhhhhhcccCccCCcceEEecCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcCCC
Confidence 10 0000 0
Q ss_pred ---------------cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC-----------------
Q 006068 210 ---------------EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA----------------- 257 (662)
Q Consensus 210 ---------------~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~----------------- 257 (662)
....+|++++||+++. |++.||++|++++|+|..
T Consensus 243 l~~~~l~~~l~~~~~~~~~~Pv~~gSa~~~~--------------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~ 308 (704)
T 2rdo_7 243 LTEAEIKGALRQRVLNNEIILVTCGSAFKNK--------------GVQAMLDAVIDYLPSPVDVPAINGILDDGKDTPAE 308 (704)
T ss_pred CCHHHHHHHHHHHHHhCCeeEEEEeecccCc--------------cHHHHHHHHHHHCCChhhcccccccCCcccccccc
Confidence 0012799999999998 999999999999999954
Q ss_pred ---CCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCC
Q 006068 258 ---SLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGD 334 (662)
Q Consensus 258 ---~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGd 334 (662)
++++||.++|||+.++++.|+++++|||||+|++||.|++.+.+ ..++|++|+.++|.+++++++|.|||
T Consensus 309 ~~~~~~~p~~~~VfK~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGd 381 (704)
T 2rdo_7 309 RHASDDEPFSALAFKIATDPFVGNLTFFRVYSGVVNSGDTVLNSVKA-------ARERFGRIVQMHANKREEIKEVRAGD 381 (704)
T ss_pred cccCCCCceEEEEEEEEEcCCCceEEEEEEEeeeecCCCEEEeCCCC-------cEEEeceEEEEeCCCceEcceeCCCC
Confidence 25789999999999999999999999999999999999987532 56899999999999999999999999
Q ss_pred EEEEcCcCCCccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-C
Q 006068 335 IISVAGMTKPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-M 413 (662)
Q Consensus 335 Ivai~gl~~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~ 413 (662)
||+|.|++++.+|||||+.+.+..++++++++|++++++.|+++ .|.+||.++|.|+.++||+|+++.+ +
T Consensus 382 Iv~i~gl~~~~~GdTl~~~~~~~~l~~~~~~~Pv~~~ai~p~~~---------~d~~kl~~~L~~L~~eDp~l~v~~~~e 452 (704)
T 2rdo_7 382 IAAAIGLKDVTTGDTLCDPDAPIILERMEFPEPVISIAVEPKTK---------ADQEKMGLALGRLAKEDPSFRVWTDEE 452 (704)
T ss_pred EEEEeCcccCccCCEEeCCCcccccCCCCCCCceEEEEEEECCh---------HHHHHHHHHHHHHHhhCCEEEEEEcCC
Confidence 99999999999999999988888999999999999999999876 5789999999999999999999986 7
Q ss_pred CCeEEEEecChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-e---c--------------------------------C-
Q 006068 414 AETYEVQGRGELQLGILIENMRRE-GFELSVSPPKVMYKT-E---N--------------------------------G- 455 (662)
Q Consensus 414 ~~~~~v~G~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~---~--------------------------------g- 455 (662)
+++++|+|||||||+|++++|+|+ |+++.+++|+|+||| + . |
T Consensus 453 tge~il~g~GelhLei~~~rL~~~f~v~v~~~~p~V~yrEti~~~~~~~~~~~~kq~gg~~q~~~v~~~~ePl~~~~~g~ 532 (704)
T 2rdo_7 453 SNQTIIAGMGELHLDIIVDRMKREFNVEANVGKPQVAYRETIRQKVTDVEGKHAKQSGGRGQYGHVVIDMYPLEPGSNPK 532 (704)
T ss_pred CCcEEEEeCCHHHHHHHHHHHHHHhCceEEEeCCEEEEEEeeccccccceeeeccccCCCCeeEEEEEEEEECCCCCCCC
Confidence 778999999999999999999986 999999999999999 3 1 1
Q ss_pred ------------------------------------------------------------------------------ee
Q 006068 456 ------------------------------------------------------------------------------VK 457 (662)
Q Consensus 456 ------------------------------------------------------------------------------~~ 457 (662)
++
T Consensus 533 g~~f~~~~~g~~~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~l 612 (704)
T 2rdo_7 533 GYEFINDIKGGVIPGEYIPAVDKGIQEQLKAGPLAGYPVVDMGIRLHFGSYHDVDSSELAFKLAASIAFKEGFKKAKPVL 612 (704)
T ss_pred CcEEEEeccCCcCcHHHHHHHHHHHHHHHhcCCcCCCceeeEEEEEEeccccCCCCcHHHHHHHHHHHHHHHHHhcCCee
Confidence 37
Q ss_pred eecceeEEEEE----chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceee
Q 006068 458 LEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEK 531 (662)
Q Consensus 458 ~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~ 531 (662)
+|||++++|.| +|+||++|++|||+| ++|+ +++++|+|.+|++||+||.++|||+|+|+|+|++.|+||++
T Consensus 613 lEPi~~~~i~~p~~~~G~v~~~l~~rrG~i---~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~ 689 (704)
T 2rdo_7 613 LEPIMKVEVETPEENTGDVIGDLSRRRGML---KGQESEVTGVKIHAEVPLSEMFGYATQLRSLTKGRASYTMEFLKYDE 689 (704)
T ss_pred eeeEEEEEEEeCHHHHhHHHHHHHhCCceE---eCceecCCeEEEEEEecHHHHhhHHHHhHhhcCCceEEEEEeCcceE
Confidence 89999999999 999999999999999 9999 68999999999999999999999999999999999999999
Q ss_pred ccCCCC
Q 006068 532 HRGLLG 537 (662)
Q Consensus 532 ~~g~~~ 537 (662)
+||++.
T Consensus 690 ~~~~~~ 695 (704)
T 2rdo_7 690 APSNVA 695 (704)
T ss_pred CCccHH
Confidence 998853
No 5
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=9.9e-81 Score=722.29 Aligned_cols=445 Identities=29% Similarity=0.423 Sum_probs=382.5
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
+.++++||+|+||+|||||||+++|+...+... ...+++|+.+.|+++|+|+......+.|++++++|||||||
T Consensus 6 ~~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~ 85 (693)
T 2xex_A 6 SLEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGH 85 (693)
T ss_dssp CSTTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCC
Confidence 456789999999999999999999998766431 23578999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhc----
Q 006068 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL---- 205 (662)
Q Consensus 130 ~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~---- 205 (662)
.+|..++.++++.+|++|+|+|+.++++.++..+|..+.+.++|+|+|+||+|+..++... +.+++.+.+...
T Consensus 86 ~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~~~~~---~~~~l~~~l~~~~~~~ 162 (693)
T 2xex_A 86 VDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEY---SVSTLHDRLQANAAPI 162 (693)
T ss_dssp SSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHH---HHHHHHHHHCCCEEES
T ss_pred cchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCccccchHH---HHHHHHHHhCCCceeE
Confidence 9999999999999999999999999999999999999999999999999999998776533 333443332110
Q ss_pred ----------------------CCC-C---------------------------------c-------------------
Q 006068 206 ----------------------GAT-D---------------------------------E------------------- 210 (662)
Q Consensus 206 ----------------------g~~-~---------------------------------~------------------- 210 (662)
.+. + +
T Consensus 163 ~ipisa~~~~~~l~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~r~~l~e~l~e~dd~l~e~~l~~~~~~~~~~~~ 242 (693)
T 2xex_A 163 QLPIGAEDEFEAIIDLVEMKCFKYTNDLGTEIEEIEIPEDHLDRAEEARASLIEAVAETSDELMEKYLGDEEISVSELKE 242 (693)
T ss_dssp EEEECCGGGCCEEEETTTTEEEECCSSSSCSCEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHTTCCCCHHHHHH
T ss_pred EeecccCCCcceeeeeecceeEEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHhcCCCCCHHHHHH
Confidence 000 0 0
Q ss_pred --------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC--------------------CCCCC
Q 006068 211 --------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA--------------------SLDAP 262 (662)
Q Consensus 211 --------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~--------------------~~~~p 262 (662)
..-+|++++||.+|. |++.||++|++++|+|.. ++++|
T Consensus 243 ~l~~~~~~~~~~Pv~~gSA~~~~--------------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~~~p 308 (693)
T 2xex_A 243 AIRQATTNVEFYPVLCGTAFKNK--------------GVQLMLDAVIDYLPSPLDVKPIIGHRASNPEEEVIAKADDSAE 308 (693)
T ss_dssp HHHHHHHTTSCEEEEECBTTTTB--------------SHHHHHHHHHHHSCCGGGSCCEEEEETTEEEEEEEECSCTTSC
T ss_pred HHHHHHHhCCeeeEEEeecccCc--------------CHHHHHHHHHHHCCCchhcccccccCCCccccceeecCCCCCc
Confidence 012699999999998 999999999999999964 36789
Q ss_pred ceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcC
Q 006068 263 FQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT 342 (662)
Q Consensus 263 ~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~ 342 (662)
|.++|||+.+|++.|+++++|||||+|++||.|++... .+.+||++|+.++|.+++++++|.|||||+|.|++
T Consensus 309 ~~a~VfK~~~d~~~g~~~~~RV~sG~l~~g~~v~~~~~-------~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~ 381 (693)
T 2xex_A 309 FAALAFKVMTDPYVGKLTFFRVYSGTMTSGSYVKNSTK-------GKRERVGRLLQMHANSRQEIDTVYSGDIAAAVGLK 381 (693)
T ss_dssp CEEEEEEEEEETTTEEEEEEEEEESEEETTEEEEETTT-------TEEEEECCEEEECSSCEEECSEEETTCEEEEESCS
T ss_pred eEEEEEEeeecCCCceEEEEEEEeeeEecCCEEEecCC-------CceEEeceEEEEeCCCceEccccCcCCEEEEeCcc
Confidence 99999999999999999999999999999999998743 26789999999999999999999999999999999
Q ss_pred CCccCceeeecCCCCCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEe
Q 006068 343 KPSIGHTVANTEVTTALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQG 421 (662)
Q Consensus 343 ~~~~GdTl~~~~~~~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G 421 (662)
++.+|||||+.+.+.+++++++++|++++++.|+++ .|..||.++|.|+.++||+|+++.+ ++++++|+|
T Consensus 382 ~~~~GdTl~~~~~~~~~~~~~~~~Pv~~~av~p~~~---------~d~~kl~~~L~~l~~eDp~l~~~~~~et~e~il~g 452 (693)
T 2xex_A 382 DTGTGDTLCGEKNDIILESMEFPEPVIHLSVEPKSK---------ADQDKMTQALVKLQEEDPTFHAHTDEETGQVIIGG 452 (693)
T ss_dssp SCCTTCEEEETTCCEECCCCSSCSCSEEEEEEESSH---------HHHHHHHHHHHHHHHHCTTCEEEC---CCCEEEEE
T ss_pred cCccCCEEecCCCccccCCcCCCCceEEEEEEeCCc---------hhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEe
Confidence 999999999998888999999999999999999875 5889999999999999999999986 677899999
Q ss_pred cChhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-ecC--------------------------------------------
Q 006068 422 RGELQLGILIENMRRE-GFELSVSPPKVMYKT-ENG-------------------------------------------- 455 (662)
Q Consensus 422 ~GeLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~g-------------------------------------------- 455 (662)
||||||+|++++|+|+ |+|+.+++|+|+||| +.+
T Consensus 453 ~Gelhlei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~ 532 (693)
T 2xex_A 453 MGELHLDILVDRMKKEFNVECNVGAPMVSYRETFKSSAQVQGKFSRQSGGRGQYGDVHIEFTPNETGAGFEFENAIVGGV 532 (693)
T ss_dssp SSHHHHHHHHHHHHHHSCCCEEECCCEECCEEEESSCEEEEEEEEECTTSSCEEEEEEEEEEECCTTCCCEEEECCCTTS
T ss_pred CCHHHHHHHHHHHHHHhCceEEEeCCeEEEEEEeccccceeEeeccccCCCCceEEEEEEEEECCCCCCCEEEecCCCCc
Confidence 9999999999999886 999999999999999 320
Q ss_pred ------------------------------------------------------------------eeeecceeEEEEE-
Q 006068 456 ------------------------------------------------------------------VKLEPIEEVTIEL- 468 (662)
Q Consensus 456 ------------------------------------------------------------------~~~EP~~~~~i~v- 468 (662)
+++|||++++|.|
T Consensus 533 ~p~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p 612 (693)
T 2xex_A 533 VPREYIPSVEAGLKDAMENGVLAGYPLIDVKAKLYDGSYHDVDSSEMAFKIAASLALKEAAKKCDPVILEPMMKVTIEMP 612 (693)
T ss_dssp SCGGGHHHHHHHHHHHHHTCSSSSCCBCSEEEEEEEEECCTTTCCHHHHHHHHHHHHHHHHTTSCEEEEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeccccCCCCCHHHHHHHHHHHHHHHHHhcCCEEEeeeEEEEEEEc
Confidence 3789999999999
Q ss_pred ---chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCC
Q 006068 469 ---LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (662)
Q Consensus 469 ---~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (662)
+|+||++|++|||+| ++|+ +|+++|+|.+|++||+||+++|||+|+|+|+|++.|+||+++|+++
T Consensus 613 ~~~~G~v~~~l~~rrG~i---~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 682 (693)
T 2xex_A 613 EEYMGDIMGDVTSRRGRV---DGMEPRGNAQVVNAYVPLSEMFGYATSLRSNTQGRGTYTMYFDHYAEVPKSI 682 (693)
T ss_dssp GGGHHHHHHHHHHTTCEE---EEEEEETTEEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEECCHHH
T ss_pred HHHHHHHHHHHHhCCcEe---ecccccCCeEEEEEEeCHHHHHhHHHHhHHhcCCceEEEEEeCcceECChhH
Confidence 999999999999999 9999 6899999999999999999999999999999999999999999875
No 6
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=100.00 E-value=2.7e-80 Score=701.98 Aligned_cols=445 Identities=30% Similarity=0.407 Sum_probs=382.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC---CccccccccccccccceeEeeeEEEEEecC-----eeEEEEeCCCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI---PHERAMDSISLERERGITIASKVTGISWRE-----NELNMVDTPGH 129 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-----~~iniIDTPGh 129 (662)
+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|+++|+|+.+....+.|.. +.++|||||||
T Consensus 4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh 83 (600)
T 2ywe_A 4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH 83 (600)
T ss_dssp GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence 4689999999999999999999999877532 246889999999999999999999998863 89999999999
Q ss_pred ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 130 ~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
.||..++.++++.+|++|||||+.+|++.||..+|..+...++|+|+|+||+|+.+++++ ++.+++.+. ++...
T Consensus 84 ~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~~~---~v~~el~~~---lg~~~ 157 (600)
T 2ywe_A 84 VDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSADVD---RVKKQIEEV---LGLDP 157 (600)
T ss_dssp GGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCCHH---HHHHHHHHT---SCCCG
T ss_pred HhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccCHH---HHHHHHHHh---hCCCc
Confidence 999999999999999999999999999999999999999999999999999999887753 334444332 34432
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeecee
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVV 289 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l 289 (662)
.+++++||++|. |+++||++|++++|+|..++++||+++||++++++|.|+++++||++|++
T Consensus 158 ----~~vi~vSAktg~--------------GI~~Lle~I~~~lp~p~~~~~~pl~~lV~~~~~d~~~G~v~~~rV~sG~l 219 (600)
T 2ywe_A 158 ----EEAILASAKEGI--------------GIEEILEAIVNRIPPPKGDPQKPLKALIFDSYYDPYRGAVAFVRIFDGEV 219 (600)
T ss_dssp ----GGCEECBTTTTB--------------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESEE
T ss_pred ----ccEEEEEeecCC--------------CchHHHHHHHHhcccccccccCCcceeEEEEeecccceEEEEEEEEeCEE
Confidence 258999999998 99999999999999999889999999999999999999999999999999
Q ss_pred ccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc-C---cCCCccCceeeecCCC--CCCCCCc
Q 006068 290 SVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-G---MTKPSIGHTVANTEVT--TALPTIE 363 (662)
Q Consensus 290 ~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~~GdTl~~~~~~--~~l~~~~ 363 (662)
++||.|.+.+.+ ...+|.+++.+.+ ++++++++.||||+++. | ++++.+|||||+.+++ .++|+++
T Consensus 220 ~~Gd~I~~~~~~-------~~~~v~~i~~~~~-~~~~v~~~~aGdi~~v~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~ 291 (600)
T 2ywe_A 220 KPGDKIMLMSTG-------KEYEVTEVGAQTP-KMTKFDKLSAGDVGYIAASIKDVRDIRIGDTITHAKNPTKEPVPGFQ 291 (600)
T ss_dssp CTTCEEEETTTT-------EEEECCEEEEESS-SEEEESCEETTCEEEEESSCCCTTSSCTTCEEEESSSCCSSCCSCCC
T ss_pred ecCCEEEecccc-------ceEeeecccccCC-CceECCEEecCceeeeeccccchhhccCCCEEEeCCCccccccCCCC
Confidence 999999998642 5678999998876 58899999999998874 4 5689999999999887 5899999
Q ss_pred CCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEecCC----CeEEEEecChhhHHHHHHHHHhc-C
Q 006068 364 LDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMA----ETYEVQGRGELQLGILIENMRRE-G 438 (662)
Q Consensus 364 ~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~----~~~~v~G~GeLhL~vl~e~Lrre-g 438 (662)
+++|++++++.|+++ .+.++|.++|.|+.++||+|+++++++ ..|.|++||||||+|++|||+|| |
T Consensus 292 ~~~P~v~~~i~p~~~---------~d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~g~~~~~~G~lHlei~~erl~re~~ 362 (600)
T 2ywe_A 292 PAKPMVYAGIYPAED---------TTYEELRDALEKYAINDAAIVYEPESSPALGMGFRVGFLGLLHMEIVQERLEREYG 362 (600)
T ss_dssp CCCCCEEEEEEECTT---------CCHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCcEEEEEeecccc---------ccHHHHHHHHHHHhhhCCEEEEEECCccccccceEEEeccHHHHHHHHHHHHhhcC
Confidence 999999999999886 478999999999999999999997633 45888889999999999999987 9
Q ss_pred eEEEEeCCEEEEEE-e--cC-------------------eeeecceeEEEEE----chhHHHHhhccceEEEeecccc--
Q 006068 439 FELSVSPPKVMYKT-E--NG-------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW-- 490 (662)
Q Consensus 439 ~ev~vs~P~V~yrE-~--~g-------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~-- 490 (662)
+++.+++|+|+||| + +| .++|||++++|.| +|+||++|++|||++ ++|+
T Consensus 363 ~~v~~~~P~V~yreti~~~g~~~~~~~p~~~p~~~~~~~~llEP~~~~~i~vP~e~~G~v~~~~~~rrG~~---~~~~~~ 439 (600)
T 2ywe_A 363 VKIITTAPNVIYRVKKKFTDEVIEVRNPMDFPDNAGLIEYVEEPFVLVTIITPKEYVGPIIQLCQEKRGIQ---KNMTYL 439 (600)
T ss_dssp CCEEECCCEECEEEEETTCSSCEEESSGGGSCSCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE---EEEEEE
T ss_pred ceEEEEeeeEEEEEEecCCCcEEEEeChhhCCCCCcccccccCCeEEEEEEecHHHHHHHHHHHHHcCcEE---eccEEc
Confidence 99999999999999 4 46 6999999999999 999999999999999 9999
Q ss_pred -CCEEEEEEEeccccc-cchhhhccccceeeEEeeeeecceeec-cCCCCCccceeEEE
Q 006068 491 -GWLWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYEKH-RGLLGNVRKGVLVS 546 (662)
Q Consensus 491 -~~~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~~~-~g~~~~~~~g~~~~ 546 (662)
+++++|+|++|++|| +||.++|+|+|+|+|+|+++|+||+|+ .+.+..+.||.+|-
T Consensus 440 ~~~~~~i~~~~P~~e~~~~~~~~L~s~T~G~g~~~~~f~~y~~~~~~~~~~~~ng~~v~ 498 (600)
T 2ywe_A 440 DPNTVYLEYEMPLSEIIVDFHDKIKSISRGFASYDYEFIGYRPSDLIKLTVLINKKPVD 498 (600)
T ss_dssp ETTEEEEEEEEEHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEECCEEEEEEEESSSBCG
T ss_pred CCCEEEEEEEEcHHHHHhhHHHhhhhcCCCeEEEEEEeccceEccccccccccCCCEec
Confidence 379999999999999 699999999999999999999999999 58899999998773
No 7
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=100.00 E-value=1e-80 Score=721.95 Aligned_cols=444 Identities=30% Similarity=0.425 Sum_probs=339.5
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA 130 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~ 130 (662)
.++++||+|+||+|||||||+++|+..++... ...+++|+.+.|+++|+|+......+.|+++.++|||||||.
T Consensus 9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~ 88 (691)
T 1dar_A 9 LKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHV 88 (691)
T ss_dssp GGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSST
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCcc
Confidence 35689999999999999999999998776421 235789999999999999999999999999999999999999
Q ss_pred cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh------
Q 006068 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN------ 204 (662)
Q Consensus 131 dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~------ 204 (662)
+|..++.++++.+|++|+|+|+.++++.++..+|..+...++|+++|+||+|+..++... +.+++.+.+..
T Consensus 89 df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~~~~~---~~~~l~~~l~~~~~~~~ 165 (691)
T 1dar_A 89 DFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWL---VIRTMQERLGARPVVMQ 165 (691)
T ss_dssp TCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTCCHHH---HHHHHHHTTCCCEEECE
T ss_pred chHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccCCHHH---HHHHHHHHhCCCcccee
Confidence 999999999999999999999999999999999999999999999999999998776533 33333332210
Q ss_pred --------------------------cCC----------------------------CCc--------------------
Q 006068 205 --------------------------LGA----------------------------TDE-------------------- 210 (662)
Q Consensus 205 --------------------------~g~----------------------------~~~-------------------- 210 (662)
.|. .++
T Consensus 166 ~Pi~~~~~~~g~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~l~e~~~e~dd~l~e~~l~~~~~~~~~~~~~ 245 (691)
T 1dar_A 166 LPIGREDTFSGIIDVLRMKAYTYGNDLGTDIREIPIPEEYLDQAREYHEKLVEVAADFDENIMLKYLEGEEPTEEELVAA 245 (691)
T ss_dssp EEESCGGGCCEEEETTTTEEEEECSTTSCCEEEECCCGGGHHHHHHHHHHHHHHHTTTCHHHHHHHHHTCCCCHHHHHHH
T ss_pred ccccCCCcccchhhhhcceeeEeccCCCceeEEecCCHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHCCCCCCHHHHHHH
Confidence 000 000
Q ss_pred -------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC------------------CCCCCcee
Q 006068 211 -------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA------------------SLDAPFQM 265 (662)
Q Consensus 211 -------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~------------------~~~~p~~~ 265 (662)
..-+|++++||++|. |+++||++|++++|+|.. ++++||.+
T Consensus 246 ~~~~~~~~~~~Pv~~gSA~~~~--------------Gv~~LLd~i~~~lPsP~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 311 (691)
T 1dar_A 246 IRKGTIDLKITPVFLGSALKNK--------------GVQLLLDAVVDYLPSPLDIPPIKGTTPEGEVVEIHPDPNGPLAA 311 (691)
T ss_dssp HHHHHHTTSCEEEEECBGGGTB--------------SHHHHHHHHHHHSCCTTTSCCEEEECSSSCEEEECCCTTSCCEE
T ss_pred HHHHHHhCcEeEEEEeecccCc--------------CHHHHHHHHHHhCCChhhcccccccCCCccccccccCCCCCcEE
Confidence 012799999999998 999999999999999975 36789999
Q ss_pred EEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCc
Q 006068 266 LVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPS 345 (662)
Q Consensus 266 ~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~ 345 (662)
+|||+.++++.|+++++|||||+|++||.|++.+.+ ..++|++|+.++|.+++++++|.|||||+|.|++++.
T Consensus 312 ~Vfk~~~d~~~G~~~~~RV~sG~l~~g~~v~~~~~~-------~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~ 384 (691)
T 1dar_A 312 LAFKIMADPYVGRLTFIRVYSGTLTSGSYVYNTTKG-------RKERVARLLRMHANHREEVEELKAGDLGAVVGLKETI 384 (691)
T ss_dssp EEEEEEEETTTEEEEEEEEEESEEESSCEEEETTTT-------EEEECCEEEEECSSCEEEESEEETTCEEEEECCSSCC
T ss_pred EEEEEEEcCCCCcEEEEEEeeeeEecCCEEEecCCC-------cEEEEceEEEEeCCCceEcceecCCCEEEEeCcccCc
Confidence 999999999999999999999999999999987532 6789999999999999999999999999999999999
Q ss_pred cCceeeecCCC-CCCCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecC
Q 006068 346 IGHTVANTEVT-TALPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRG 423 (662)
Q Consensus 346 ~GdTl~~~~~~-~~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~G 423 (662)
+|||||+.+.+ .+++++++++|+++++|.|+++ .|.+||.++|.|+.++||+|+++.+ ++++++|+|||
T Consensus 385 ~Gdtl~~~~~~~~~l~~~~~~~P~~~~ai~p~~~---------~d~~kl~~~L~~l~~eDp~l~v~~~~et~e~i~~g~G 455 (691)
T 1dar_A 385 TGDTLVGEDAPRVILESIEVPEPVIDVAIEPKTK---------ADQEKLSQALARLAEEDPTFRVSTHPETGQTIISGMG 455 (691)
T ss_dssp TTCEEEETTCCCCBCC-----------------------------------------CCCCSCEEEC-----CEEEEESC
T ss_pred cCCEEecCCCcccccCCCCCCCceEEEEEEECCc---------hhHHHHHHHHHHHHhhCCeEEEEEcCCCCcEEEEeCC
Confidence 99999999888 8999999999999999999876 4789999999999999999999986 67789999999
Q ss_pred hhhHHHHHHHHHhc-CeEEEEeCCEEEEEE-ec-----------------------------------------------
Q 006068 424 ELQLGILIENMRRE-GFELSVSPPKVMYKT-EN----------------------------------------------- 454 (662)
Q Consensus 424 eLhL~vl~e~Lrre-g~ev~vs~P~V~yrE-~~----------------------------------------------- 454 (662)
||||+|++++|+|+ |+++.+++|+|+||| +.
T Consensus 456 elhlei~~~rL~~~~~v~v~~~~p~V~yrEti~~~~~~~~~~~kq~gg~~~~~~v~~~~ePl~~g~g~~f~~~~~g~~~p 535 (691)
T 1dar_A 456 ELHLEIIVDRLKREFKVDANVGKPQVAYRETITKPVDVEGKFIRQTGGRGQYGHVKIKVEPLPRGSGFEFVNAIVGGVIP 535 (691)
T ss_dssp CC---------CCCEEEBTTTBCCCBCCEEECSSCEEEEEEEEECCSSSCEEEEEEEEEEECCTTCCEEEEECCCTTSSC
T ss_pred HHHHHHHHHHHHHhhCceEEEeCCeEEEEEeeccceeeeeeeccccCCCCceEEEEEEEEECCCCCCCEEeecccCCcCc
Confidence 99999999999987 999999999999999 32
Q ss_pred ---------------------------------------------------------------CeeeecceeEEEEE---
Q 006068 455 ---------------------------------------------------------------GVKLEPIEEVTIEL--- 468 (662)
Q Consensus 455 ---------------------------------------------------------------g~~~EP~~~~~i~v--- 468 (662)
.+++|||++++|.|
T Consensus 536 ~~~~~~v~~g~~~a~~~G~l~g~pv~~v~v~l~dg~~h~vds~~~~f~~a~~~a~~~a~~~a~~~llEPi~~~~i~~p~~ 615 (691)
T 1dar_A 536 KEYIPAVQKGIEEAMQSGPLIGFPVVDIKVTLYDGSYHEVDSSEMAFKIAGSMAIKEAVQKGDPVILEPIMRVEVTTPEE 615 (691)
T ss_dssp TTTHHHHHHHHHHHTTSCTTTSCCBCSEEEEEEEECCCTTTBCHHHHHHHHHHHHHHHHHTSCCEEEEEEEEEEEEECTT
T ss_pred HHHHHHHHHHHHHHHhcCCccCCceeeEEEEEEeeeccccCcchHHHHHHHHHHHHHHHHHcCCEEeeceEEEEEEEcHH
Confidence 03789999999999
Q ss_pred -chhHHHHhhccceEEEeecccc--CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCC
Q 006068 469 -LSLCIWYLSSLRFCFRLTRNMW--GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLL 536 (662)
Q Consensus 469 -~g~v~~~l~~Rrg~i~~~~~~~--~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~ 536 (662)
+|+||++|++|||+| ++|+ +++++|+|.+|++||+||+++|||+|+|+|+|++.|+||+++|+++
T Consensus 616 ~~G~v~~~l~~rrG~i---~~~~~~~~~~~i~a~vP~~e~~gy~~~Lrs~T~G~~~~~~~f~~y~~~~~~~ 683 (691)
T 1dar_A 616 YMGDVIGDLNARRGQI---LGMEPRGNAQVIRAFVPLAEMFGYATDLRSKTQGRGSFVMFFDHYQEVPKQV 683 (691)
T ss_dssp TTTHHHHHHHHTTCCE---EEEEEETTEEEEEEEEETTTSSSHHHHHHHHTTTCCEEEEEEEEEEECCHHH
T ss_pred HHhHHHHHHHHCCcee---ecceecCCeEEEEEEecHHHHhhHHHHHHHhcCCceEEEEEeCcceECChhH
Confidence 999999999999999 9999 6899999999999999999999999999999999999999999865
No 8
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=100.00 E-value=3.1e-79 Score=694.69 Aligned_cols=446 Identities=28% Similarity=0.395 Sum_probs=379.1
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC---CccccccccccccccceeEeeeEEEEEec-----CeeEEEEeCCCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI---PHERAMDSISLERERGITIASKVTGISWR-----ENELNMVDTPGH 129 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~---~~~~v~D~~~~E~ergiTi~~~~~~~~~~-----~~~iniIDTPGh 129 (662)
+++|||+|+||+|||||||+++|++.+|... ...+++|+.+.|+++|+|+.+....+.|. ++.++|||||||
T Consensus 2 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh 81 (599)
T 3cb4_D 2 KNIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGH 81 (599)
T ss_dssp TTEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCc
Confidence 4689999999999999999999999887532 34688999999999999999999999887 389999999999
Q ss_pred ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 130 ~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
.||..++.++++.+|++|+|||+.+|++.||..+|..+...++|+|+|+||+|+.+++++ ++.+++.+. ++...
T Consensus 82 ~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~~~---~v~~ei~~~---lg~~~ 155 (599)
T 3cb4_D 82 VDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAADPE---RVAEEIEDI---VGIDA 155 (599)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCCHH---HHHHHHHHH---TCCCC
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCcccccHH---HHHHHHHHH---hCCCc
Confidence 999999999999999999999999999999999999999999999999999999887753 344444443 33322
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeecee
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVV 289 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l 289 (662)
.+++++||++|. |+++|+++|.+++|+|..+.++||+++|+++.+++|.|+++++||++|+|
T Consensus 156 ----~~vi~vSAktg~--------------GI~~Ll~~I~~~lp~p~~~~~~p~~alI~d~~~d~~~G~v~~~rV~sG~l 217 (599)
T 3cb4_D 156 ----TDAVRCSAKTGV--------------GVQDVLERLVRDIPPPEGDPEGPLQALIIDSWFDNYLGVVSLIRIKNGTL 217 (599)
T ss_dssp ----TTCEEECTTTCT--------------THHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEEETTTEEEEEEEEEESCE
T ss_pred ----ceEEEeecccCC--------------CchhHHHHHhhcCCCccccccCCceeeeeeccccccccEEEEEEEEeCEE
Confidence 248999999998 99999999999999999999999999999999999999999999999999
Q ss_pred ccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc-C---cCCCccCceeeecCCC--CCCCCCc
Q 006068 290 SVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-G---MTKPSIGHTVANTEVT--TALPTIE 363 (662)
Q Consensus 290 ~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~-g---l~~~~~GdTl~~~~~~--~~l~~~~ 363 (662)
++||.+.+.+.+ ...+|.+++.+.+. .++++++.||||+++. | ++++.+|||||+.+++ .++|++.
T Consensus 218 ~~Gd~v~~~~~~-------~~~~v~~i~~~~~~-~~~~~~~~aGdi~~~~~gi~~~~~~~~GDtl~~~~~~~~~~l~~~~ 289 (599)
T 3cb4_D 218 RKGDKVKVMSTG-------QTYNADRLGIFTPK-QVDRTELKCGEVGWLVCAIKDIHGAPVGDTLTLARNPAEKALPGFK 289 (599)
T ss_dssp ESSCEEEETTTC-------CEEECCEEEEESSS-EEECSEECTTCEEEEECCCSSGGGSCTTCEEEESSSCCSSCCTTCC
T ss_pred ecCCEEEecccc-------ceeEEeeeeeccCC-ceECCEEcCCCeeEeeccccccccCccCCEeeecCCcccccccccc
Confidence 999999998643 46788899888764 8899999999998773 4 5588999999999887 7899999
Q ss_pred CCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEecCC----CeEEEEecChhhHHHHHHHHHhc-C
Q 006068 364 LDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMA----ETYEVQGRGELQLGILIENMRRE-G 438 (662)
Q Consensus 364 ~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~----~~~~v~G~GeLhL~vl~e~Lrre-g 438 (662)
+++|++++.+.|+++ .+.+++.++|.++.++||+|+++++++ .+|.+++||+|||+|++|||+|| |
T Consensus 290 ~~~P~v~~~i~p~~~---------~d~~~l~~aL~kL~~eD~sl~~~~et~~~l~~gfr~g~lG~lhlei~~erl~~e~~ 360 (599)
T 3cb4_D 290 KVKPQVYAGLFPVSS---------DDYEAFRDALGKLSLNDASLFYEPESSSALGFGFRCGFLGLLHMEIIQERLEREYD 360 (599)
T ss_dssp CCCCCEEEEEEESSG---------GGHHHHHHHHHHHHTTCSSCEEEEEEETTTEEEEEEEESSHHHHHHHHHHHHHTSC
T ss_pred CCCcceEEEEEecCc---------cCHHHHHHHHHHHHhhCcEEEEEeccccccccceEEEeccHHHHHHHHHHHHHHcC
Confidence 999999999999876 467899999999999999999987532 45888889999999999999987 9
Q ss_pred eEEEEeCCEEEEEE--ecC------------------eeeecceeEEEEE----chhHHHHhhccceEEEeecccc--CC
Q 006068 439 FELSVSPPKVMYKT--ENG------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW--GW 492 (662)
Q Consensus 439 ~ev~vs~P~V~yrE--~~g------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~--~~ 492 (662)
+++.+++|+|+||| .+| .++|||++++|.+ +|+||++|++|||++ ++|+ ++
T Consensus 361 ~~~~~~~P~V~yreti~~g~~~~~~~p~~~p~~~~~~~llEP~~~~~i~~P~e~~G~v~~~~~~rrG~~---~~~~~~~~ 437 (599)
T 3cb4_D 361 LDLITTAPTVVYEVETTSREVIYVDSPSKLPAVNNIYELREPIAECHMLLPQAYLGNVITLCVEKRGVQ---TNMVYHGN 437 (599)
T ss_dssp CCEEECCCEECEEEEESSSCEEEESSGGGSCCGGGEEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE---EEEECCTT
T ss_pred ceEEEEeeeEEEEEEecCCceEEecChhhCCCccccchhhccceEEEEEeCHHHHHHHHHHHHHcCcEE---eCcEecCC
Confidence 99999999999999 456 6999999999999 999999999999999 9999 57
Q ss_pred EEEEEEEeccccc-cchhhhccccceeeEEeeeeecceeec-cCCCCCccceeEEEc
Q 006068 493 LWKLSLTGKLRGL-VGYRSVFSSDTRGTGFMHRAFLKYEKH-RGLLGNVRKGVLVSM 547 (662)
Q Consensus 493 ~~~i~~~vP~~~l-~g~~~~l~s~T~G~g~~~~~f~~y~~~-~g~~~~~~~g~~~~~ 547 (662)
+++|+|++|++|| +||.++|+|+|+|+|+|+++|+||+|+ .+.+..+.||.+|--
T Consensus 438 ~~~i~~~~P~~e~~~~~~~~l~s~T~G~~~~~~~~~~y~~~~~~~~~~~~~g~~v~~ 494 (599)
T 3cb4_D 438 QVALTYEIPMAEVVLDFFDRLKSTSRGYASLDYNFKRFQASDMVRVDVLINGERVDA 494 (599)
T ss_dssp EEEEEEEEEHHHHHTTTHHHHHHHTTSCCEEEEEEEEEEECCEEEEEEEETTEEEEE
T ss_pred eEEEEEEecHHHHHHHHHHhhhhcCCcEEEEEEEecCceEecccccccccCCcEecc
Confidence 9999999999999 799999999999999999999999999 699999999998853
No 9
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=100.00 E-value=5.7e-77 Score=688.31 Aligned_cols=443 Identities=23% Similarity=0.314 Sum_probs=395.4
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCC------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADI------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH 129 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh 129 (662)
..++.++|+|+||+|||||||+++|++..+... ...+++|+.+.|+++|+|+......+.|+++.+||||||||
T Consensus 5 ~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~ 84 (665)
T 2dy1_A 5 GGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGY 84 (665)
T ss_dssp -CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCS
T ss_pred ccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCc
Confidence 345689999999999999999999998776421 12467888999999999999999999999999999999999
Q ss_pred ccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH------
Q 006068 130 ADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA------ 203 (662)
Q Consensus 130 ~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~------ 203 (662)
.+|..++.++++.+|++++|+|+.+|+..|+..+|+.+...++|+|+|+||+|+. .+.. ++.+++.+.+.
T Consensus 85 ~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~-~~~~---~~~~~l~~~l~~~~~~~ 160 (665)
T 2dy1_A 85 GDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG-GDYY---ALLEDLRSTLGPILPID 160 (665)
T ss_dssp GGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC-CCHH---HHHHHHHHHHCSEEECE
T ss_pred cchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh-hhHH---HHHHHHHHHhCCcceEE
Confidence 9999999999999999999999999999999999999999999999999999997 5543 33333333222
Q ss_pred --------------------------------------------------hc-------------C--CCCc--------
Q 006068 204 --------------------------------------------------NL-------------G--ATDE-------- 210 (662)
Q Consensus 204 --------------------------------------------------~~-------------g--~~~~-------- 210 (662)
.+ | ...+
T Consensus 161 ~Pi~~~~~~~g~~d~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~r~~l~e~~~~~d~~l~e~~l~~~~l~~~~~~~~~~~ 240 (665)
T 2dy1_A 161 LPLYEGGKWVGLIDVFHGKAYRYENGEEREAEVPPEERERVQRFRQEVLEAIVETDEGLLEKYLEGEEVTGEALEKAFHE 240 (665)
T ss_dssp EEEEETTEEEEEEETTTTEEEEEETTEEEEECCCGGGHHHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred eeecCCCcccchhhhhhhheeecCCCceeEecCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHCCCCCCHHHHHHHHHH
Confidence 00 0 0000
Q ss_pred ----CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCC-CCCCceeEEEeeeeecccceEEEEEEe
Q 006068 211 ----QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS-LDAPFQMLVTMMEKDFYLGRILTGRVS 285 (662)
Q Consensus 211 ----~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~-~~~p~~~~V~~~~~~~~~G~i~~gRV~ 285 (662)
...+|++++||++|. |+++||++|++++|+|... +++||.++|||+.++++.|+++++||+
T Consensus 241 ~~~~~~~~pv~~~SA~~~~--------------Gv~~Ll~~i~~~lp~p~~~~~~~p~~~~V~k~~~d~~~G~~~~~rV~ 306 (665)
T 2dy1_A 241 AVRRGLLYPVALASGEREI--------------GVLPLLELILEALPSPTERFGDGPPLAKVFKVQVDPFMGQVAYLRLY 306 (665)
T ss_dssp HHHTTSCEEEEECBTTTTB--------------SHHHHHHHHHHHSCCHHHHHCSCSCEEEEEEEEEETTTEEEEEEEEE
T ss_pred HHHhCCeeEEEEeecccCc--------------CHHHHHHHHHHhCCCccccCCCCCeEEEEEEEEEcCCCCeEEEEEEc
Confidence 012799999999998 9999999999999999754 689999999999999999999999999
Q ss_pred eceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCC--CCCCCCc
Q 006068 286 SGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVT--TALPTIE 363 (662)
Q Consensus 286 sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~--~~l~~~~ 363 (662)
+|+|++||.|++.+ ...+|++|+.++|.+++++++|.|||||+|.|++++.+|||||+.+.+ .++++++
T Consensus 307 sG~l~~g~~v~~~~---------~~~~v~~l~~~~g~~~~~v~~a~aG~iv~i~gl~~~~~Gdtl~~~~~~~~~~l~~~~ 377 (665)
T 2dy1_A 307 RGRLKPGDSLQSEA---------GQVRLPHLYVPMGKDLLEVEEAEAGFVLGVPKAEGLHRGMVLWQGEKPESEEVPFAR 377 (665)
T ss_dssp ESEECTTEEEBCTT---------SCEEESSEEEEETTEEEEESCEETTCEEEESSCTTCCTTCEEESSSCCCGGGSCCCC
T ss_pred ccEEecCCEEEcCC---------CeEEEeEEEEEeCCCeeECCEECCCCEEEEeCCccCccCCEEecCCCccccccCCCC
Confidence 99999999999764 246999999999999999999999999999999999999999998887 7899999
Q ss_pred CCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhcCeEEE
Q 006068 364 LDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRREGFELS 442 (662)
Q Consensus 364 ~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrreg~ev~ 442 (662)
+++|++++++.|+++ .|.+||.++|.|+.++||+|+++.+ ++++++|+|||||||+|++++|+++|+|+.
T Consensus 378 ~~~P~~~~~i~p~~~---------~d~~kl~~~L~~l~~edp~l~v~~~~et~e~i~~g~Gelhlei~~~rl~~~~v~v~ 448 (665)
T 2dy1_A 378 LPDPNVPVALHPKGR---------TDEARLGEALRKLLEEDPSLKLERQEETGELLLWGHGELHLATAKERLQDYGVEVE 448 (665)
T ss_dssp CCCCCEEEEEEESSH---------HHHHHHHHHHHHHHHHCTTSEEEECTTTCCEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred CCCceEEEEEEECCh---------hhHHHHHHHHHHHHHhCCeEEEEEcCCCCCEEEEecCHHHHHHHHHHHHHCCceEE
Confidence 999999999999875 6889999999999999999999986 677899999999999999999996699999
Q ss_pred EeCCEEEEEE-ecC------------------------------------------------------------------
Q 006068 443 VSPPKVMYKT-ENG------------------------------------------------------------------ 455 (662)
Q Consensus 443 vs~P~V~yrE-~~g------------------------------------------------------------------ 455 (662)
+++|+|+||| +.+
T Consensus 449 ~~~p~V~yrEti~~~~~~~~~~~k~~gg~g~~~~v~~~~eP~~g~~f~~~~~~g~~~~~~~~~v~~g~~~a~~~G~l~g~ 528 (665)
T 2dy1_A 449 FSVPKVPYRETIKKVAEGQGKYKKQTGGHGQYGDVWLRLEPASEYGFEWRITGGVIPSKYQEAIEEGIKEAAKKGVLAGF 528 (665)
T ss_dssp EECCCCCCEEEESSCEEEEEEEEEEETTEEEEEEEEEEEEECSSCEEEECCCTTSSCGGGHHHHHHHHHHHHTSCTTTSC
T ss_pred EeCCEEEEEEeeccceeeeeecccccCCCcceEEEEEEEEECCCCEEeeeccCCcchHHHHHHHHHHHHHHHhcCCccCC
Confidence 9999999999 421
Q ss_pred -----------------------------------------eeeecceeEEEEE----chhHHHHhhccceEEEeecccc
Q 006068 456 -----------------------------------------VKLEPIEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW 490 (662)
Q Consensus 456 -----------------------------------------~~~EP~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~ 490 (662)
+++|||++++|.| +|+||++|++|||++ ++|+
T Consensus 529 pv~~v~v~l~dg~~h~~ds~~~~f~~a~~~a~~~a~~~a~p~llEPi~~~~i~~p~~~~g~v~~~l~~rrG~i---~~~~ 605 (665)
T 2dy1_A 529 PVMGFKAIVYNGSYHEVDSSDLAFQIAASLAFKKVMAEAHPVLLEPIYRLKVLAPQERVGDVLSDLQARRGRI---LGME 605 (665)
T ss_dssp CBCSEEEEEEEEECCTTTBCHHHHHHHHHHHHHHHHHHSCEEEEEEEEEEEEEEEGGGHHHHHHHHHHTTCEE---EEEE
T ss_pred ceeeEEEEEEeeeccCCCCCHHHHHHHHHHHHHHHHhhCCCEEEeeeEEEEEEECHHHHHHHHHHHHHCCCEE---eCcE
Confidence 3799999999999 999999999999999 9999
Q ss_pred --CCEEEEEEEeccccccchhhhccccceeeEEeeeeecceeeccCCCC
Q 006068 491 --GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKHRGLLG 537 (662)
Q Consensus 491 --~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~~g~~~ 537 (662)
+++++|+|.+|++||+||+++|||+|+|+|+|++.|+||+++|+++.
T Consensus 606 ~~~~~~~i~a~~P~~e~~~~~~~Lrs~T~G~~~~~~~f~~y~~~~~~~~ 654 (665)
T 2dy1_A 606 QEGALSVVHAEVPLAEVLEYYKALPGLTGGAGAYTLEFSHYAEVPPHLA 654 (665)
T ss_dssp EETTEEEEEEEEEGGGCTTHHHHHHHHHTTCCEEEEEEEEEEECCHHHH
T ss_pred ecCCeEEEEEEECHHHHhhHHHHhHhhcCCcEEEEEEeCceeECCccHH
Confidence 68999999999999999999999999999999999999999998753
No 10
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=100.00 E-value=9.6e-75 Score=684.60 Aligned_cols=469 Identities=26% Similarity=0.364 Sum_probs=383.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC----ccccccccccccccceeEeeeEEEEEec----------------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP----HERAMDSISLERERGITIASKVTGISWR---------------- 117 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~----~~~v~D~~~~E~ergiTi~~~~~~~~~~---------------- 117 (662)
+++|||+|+||+|||||||+++|++.++.... ..+++|+.+.|+++|+|+.+....+.|+
T Consensus 17 ~~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 17 TNVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GGEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 45899999999999999999999998764321 2478899999999999999999988886
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC----CCHHH---
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA----VSEER--- 190 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~----~~~~~--- 190 (662)
++.++|||||||.||..++.++++.+|++|+|||+.+|++.||..+|.++...++|+|+|+||+|+.. .+++.
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~ 176 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQ 176 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999999863 23332
Q ss_pred -HHHHHHHHHHHHHhcC---CC---CcCCCccEEEcccccCccCC----------------------cc----C-C----
Q 006068 191 -CDEVESLVFDLFANLG---AT---DEQLDFPVLYASAKEGWASS----------------------TF----T-K---- 232 (662)
Q Consensus 191 -~~ei~~~v~~l~~~~g---~~---~~~~~~Pvi~~SA~~g~~~~----------------------~~----~-~---- 232 (662)
+..+.+++...+..+. .. ......++.++||++||+.. -| + +
T Consensus 177 ~~~~~~~~i~~~l~~~~~~~~~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~ 256 (842)
T 1n0u_A 177 TFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKK 256 (842)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTE
T ss_pred HHHHHHHHHHHHHhhccccccCceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCe
Confidence 3444455555443211 11 11122468889999987531 01 0 0
Q ss_pred ---C--CCCC-----------------------------------ccc--------------------------hHHHHH
Q 006068 233 ---D--PPAD-----------------------------------VRN--------------------------MSQLLD 246 (662)
Q Consensus 233 ---~--~~~~-----------------------------------~~g--------------------------v~~Lld 246 (662)
. +... .-| ++.||+
T Consensus 257 ~~~~~i~~~~~~~~~~f~~~~~~~~~~l~e~~~~~d~~~~e~~l~~~g~~l~~~e~~~~~~~l~~~~~~~~~pv~~~LLd 336 (842)
T 1n0u_A 257 WTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKKDEIPVLLEKLEIVLKGDEKDLEGKALLKVVMRKFLPAADALLE 336 (842)
T ss_dssp EESCSBCTTCCBCCBHHHHHTHHHHHHHHHHHHTTCTTHHHHHHHHTTCCCCGGGGGCCHHHHHHHHHHHHSBHHHHHHH
T ss_pred EEEecCCchhhhhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHcCCCCCHHHHhhhhHHHHHHHHhhccchHHHHHH
Confidence 0 0000 001 388999
Q ss_pred HHHhhCCCCC-------------------------CCCCCCceeEEEeeeeecccce-EEEEEEeeceeccCCEEEEeec
Q 006068 247 AIIRHVPPPK-------------------------ASLDAPFQMLVTMMEKDFYLGR-ILTGRVSSGVVSVGDKVHGLRI 300 (662)
Q Consensus 247 ~I~~~lP~p~-------------------------~~~~~p~~~~V~~~~~~~~~G~-i~~gRV~sG~l~~Gd~V~~~~~ 300 (662)
+|++++|+|. +++++||.++|||+.++++.|+ ++++|||||+|+.||.|++.+.
T Consensus 337 ~i~~~lPsP~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~p~~a~VfK~~~~~~~G~~l~~~RV~sG~l~~g~~v~v~~~ 416 (842)
T 1n0u_A 337 MIVLHLPSPVTAQAYRAEQLYEGPADDANCIAIKNCDPKADLMLYVSKMVPTSDKGRFYAFGRVFAGTVKSGQKVRIQGP 416 (842)
T ss_dssp HHHHHSCCHHHHHHHHHHHHBSSCTTSHHHHHHHTTCTTSSCEEEEEEEEEBSSTTCEEEEEEEEESEEETTCEEEEECT
T ss_pred HHHHhCCChhHhcccccccccCCcccccccceeeccCCCCCeEEEEEeeeecCCCCceEEEEEEEeeeecCCCEEEeccc
Confidence 9999999995 2568999999999999999996 9999999999999999987654
Q ss_pred cC-CCC-cceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccC-ceeeecCCCCCCCCCcCC-CCeeeeeeeec
Q 006068 301 TD-SGT-EKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIG-HTVANTEVTTALPTIELD-PPTISMTFGVN 376 (662)
Q Consensus 301 ~~-~~~-~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~G-dTl~~~~~~~~l~~~~~~-~P~~~~~~~~~ 376 (662)
+. .+. .....+||++|+.++|.+++++++|.|||||+|.|++++.+| +|||+.+.+.+++++.++ +|++++++.|.
T Consensus 417 ~~n~~~~~~~~~~rv~~l~~~~g~~~~~v~~~~aGdI~ai~gl~~~~~~t~Tl~~~~~~~~l~~~~~~~~Pv~~~avep~ 496 (842)
T 1n0u_A 417 NYVPGKKDDLFIKAIQRVVLMMGRFVEPIDDCPAGNIIGLVGIDQFLLKTGTLTTSETAHNMKVMKFSVSPVVQVAVEVK 496 (842)
T ss_dssp TCCSSSCTTEEEEECCEEEEEETTEEEEESEEETTCEEEEESCTTTCCSSEEEESCTTCCCBCCCCCCCSCCEEEEEEES
T ss_pred cccCCCCcccceEEeeeeEeeccCcccccceeCCCCEEEEEccccceecceeecCCCCccccccCCCCCCceEEEEEEEC
Confidence 21 110 012368999999999999999999999999999999998765 799998888889999988 59999999998
Q ss_pred CCCCCCCCCcccchhhHHhHhhhhhccCceEEEEecCCCeEEEEecChhhHHHHHHHHHhc--CeEEEEeCCEEEEEE-e
Q 006068 377 DSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE--GFELSVSPPKVMYKT-E 453 (662)
Q Consensus 377 ~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~G~GeLhL~vl~e~Lrre--g~ev~vs~P~V~yrE-~ 453 (662)
+. .|.+||.++|+|+.++||+|+++.+++++++|+|||||||+|++++|+|+ |+|+.+++|+|+||| +
T Consensus 497 ~~---------~d~~kl~~~L~kL~~eDp~l~v~~~etge~il~g~GelHLei~~~rL~~~f~~vev~~~~P~V~yrETi 567 (842)
T 1n0u_A 497 NA---------NDLPKLVEGLKRLSKSDPCVLTYMSESGEHIVAGTGELHLEICLQDLEHDHAGVPLKISPPVVAYRETV 567 (842)
T ss_dssp SG---------GGHHHHHHHHHHHHHHCTTCEEEECTTSCEEEEESSHHHHHHHHHHHHHTTSCSCEEEECCCCCCEEEE
T ss_pred CH---------HHHHHHHHHHHHHHHhCCcEEEEEcCCCCEEEEeccHHHHHHHHHHHHHHhcCCceEecCcEEEEEEee
Confidence 75 68999999999999999999999986678999999999999999999875 999999999999999 2
Q ss_pred -----c--------------------------------------------------------------------------
Q 006068 454 -----N-------------------------------------------------------------------------- 454 (662)
Q Consensus 454 -----~-------------------------------------------------------------------------- 454 (662)
.
T Consensus 568 ~~~~~~~~~~~~~~~~~~v~~~~ePl~~~~~~~~~~g~v~~~~~~~~~~~~l~~~~~~d~~~~~~iw~~~p~~~~~~~f~ 647 (842)
T 1n0u_A 568 ESESSQTALSKSPNKHNRIYLKAEPIDEEVSLAIENGIINPRDDFKARARIMADDYGWDVTDARKIWCFGPDGNGPNLVI 647 (842)
T ss_dssp SSCCSSCEEEECTTSSCEEEEEEEECCHHHHHHHHTTSSCTTSCHHHHHHHHHHTTCCCHHHHHTEEEESSTTTSSEEEE
T ss_pred ccccccceeeccCCcceEEEEEEEECcHHHhhHhhcCeecccccHHHHHHHHHHhcCcchhhhhceeeeccCCCCCcEEE
Confidence 0
Q ss_pred ----C----------------------------------------------------------------------eeeec
Q 006068 455 ----G----------------------------------------------------------------------VKLEP 460 (662)
Q Consensus 455 ----g----------------------------------------------------------------------~~~EP 460 (662)
| ++|||
T Consensus 648 ~~~~g~~~~~~~~~~v~~G~~~a~~~G~L~g~pv~~v~v~l~dg~~h~d~~~~~~g~f~~a~~~a~~~a~~~a~p~LLEP 727 (842)
T 1n0u_A 648 DQTKAVQYLHEIKDSVVAAFQWATKEGPIFGEEMRSVRVNILDVTLHADAIHRGGGQIIPTMRRATYAGFLLADPKIQEP 727 (842)
T ss_dssp ECCCCCTTHHHHHHHHHHHHHHHHHSCTTTSCCBCSEEEEEEEEECCSSGGGSSHHHHHHHHHHHHHHHHHHSCEEEEEE
T ss_pred ecCCCccccHHHHHHHHHHHHHHHhcCCcCCceeeeEEEEEEEeeecCCccccchhHHHHHHHHHHHHHHHhCCCeEEee
Confidence 1 27999
Q ss_pred ceeEEEEE----chhHHHHhhccceEEEeecccc---C-CEEEEEEEeccccccchhhhccccceeeEEeeeeecceeec
Q 006068 461 IEEVTIEL----LSLCIWYLSSLRFCFRLTRNMW---G-WLWKLSLTGKLRGLVGYRSVFSSDTRGTGFMHRAFLKYEKH 532 (662)
Q Consensus 461 ~~~~~i~v----~g~v~~~l~~Rrg~i~~~~~~~---~-~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~~~~f~~y~~~ 532 (662)
|+.++|.| +|+||++|++|||+| ++|+ | +++.|+|.+|++||+||+++|||+|+|+|+|++.|+||+++
T Consensus 728 i~~veI~vP~e~~G~V~~dL~~RRG~i---~~~~~~~g~~~~~I~a~vP~aE~fgy~~~LRs~T~G~g~~~~~F~~y~~v 804 (842)
T 1n0u_A 728 VFLVEIQCPEQAVGGIYSVLNKKRGQV---VSEEQRPGTPLFTVKAYLPVNESFGFTGELRQATGGQAFPQMVFDHWSTL 804 (842)
T ss_dssp EEEEEEEECGGGHHHHHHHHHTTTCEE---EEEEC---CCCEEEEEEEEGGGCTTHHHHHHHHTTTCCEEEEEEEEEEEC
T ss_pred EEEEEEEccHHHHHHHHHHHHhcCcEE---eccccCCCCceEEEEEEcChHHhhhhHHHHHhhCCCCceEEEEeccceeC
Confidence 99999999 999999999999999 9888 3 57999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q 006068 533 RGLLGN 538 (662)
Q Consensus 533 ~g~~~~ 538 (662)
|++...
T Consensus 805 p~~~~~ 810 (842)
T 1n0u_A 805 GSDPLD 810 (842)
T ss_dssp CSCTTC
T ss_pred CCCccc
Confidence 998654
No 11
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=100.00 E-value=1.1e-72 Score=637.81 Aligned_cols=362 Identities=25% Similarity=0.353 Sum_probs=301.5
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCC----------CCccccccccccccccceeEeeeEEEEEecCeeEEEEeCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGAD----------IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~----------~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTP 127 (662)
.++|||||+||+|||||||+++||+.+|.. ....++||++++|++|||||.++.+++.|++++|||||||
T Consensus 29 ~r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 29 ARRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp HTEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred cccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 468999999999999999999999999853 2235899999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh---
Q 006068 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--- 204 (662)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~--- 204 (662)
||.||.+|++++|+++|+||+||||.+|+++||+.+|++|.++++|+|+||||||++++++.. +.+++.+.|..
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~ad~~~---~~~~i~~~l~~~~~ 185 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREALHPLD---VMADIEQHLQIECA 185 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCCCHHH---HHHHHHHHHTSEEE
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhcchhH---hhhhhhhhcCCceE
Confidence 999999999999999999999999999999999999999999999999999999999999844 44444444310
Q ss_pred --------------------------------------------------------------------cCCCC------c
Q 006068 205 --------------------------------------------------------------------LGATD------E 210 (662)
Q Consensus 205 --------------------------------------------------------------------~g~~~------~ 210 (662)
.+... .
T Consensus 186 p~~~Pig~~~~f~g~vdl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~e~~~~ 265 (548)
T 3vqt_A 186 PMTWPIGMGSSFKGTYDLLHKQLHLFSATHGGRIQSGIVIHGADDPQLDEYLGDQAEQLRMDLALLEEAGTPFDEERYLK 265 (548)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECC-------CCCEECCSTTCTHHHHHHGGGHHHHHHHHHHHHHHCCCCCHHHHHT
T ss_pred eEEeeeecCCcccceEeeeeeeeeecccccCCcccccccccccchHHHHHHHHHHHHHhhhHHHHHhhccCchhHHHHHh
Confidence 00000 0
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC---------CCCCCceeEEEeeeee---cccce
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA---------SLDAPFQMLVTMMEKD---FYLGR 278 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~---------~~~~p~~~~V~~~~~~---~~~G~ 278 (662)
..-+|++++||+++. |+++||++|++++|+|.. +.+.||.++|||+.++ +|.|+
T Consensus 266 g~~~PV~~gSA~~~~--------------Gv~~LLd~iv~~~PsP~~~~~~~~~~~~~~~p~~a~vfKi~~~~~~~~~Gr 331 (548)
T 3vqt_A 266 GELTPVFFGSAINNF--------------GVREMLDMFVEFAPGPQPRPAATRVVEPGEEAFTGVVFKIQANMDKAHRDR 331 (548)
T ss_dssp TSEEEEEECBGGGTB--------------SHHHHHHHHHHHSCCSCCEEBSSSEECTTCSSCEEEEEEEECC-------C
T ss_pred CCcceeeecccccCc--------------CHHHHHHHHHHhCCCCCCccccccccCCCCcCceEEEEEEEccCCcCCCCe
Confidence 012799999999998 999999999999999964 3367999999999877 89999
Q ss_pred EEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCCC
Q 006068 279 ILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTA 358 (662)
Q Consensus 279 i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~ 358 (662)
++|+|||||+|++|+.|++.+.+ +++||.+++.+.|.+++++++|.|||||+|.|++++.+|||||+.+.+.+
T Consensus 332 la~~RV~sG~l~~g~~v~~~~~~-------~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~~~~~~ 404 (548)
T 3vqt_A 332 MAFLRICSGTFTRGMRLKHHRTG-------KDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTESKEVLK 404 (548)
T ss_dssp EEEEEEEESCEETTCEEEETTTT-------EEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESSSSCCC
T ss_pred EEEEEEecceecCCCEEEeeccc-------cccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCCCCccc
Confidence 99999999999999999998542 67899999999999999999999999999999999999999999988889
Q ss_pred CCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEecCCCeEEEEecChhhHHHHHHHHHhc-
Q 006068 359 LPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPGMAETYEVQGRGELQLGILIENMRRE- 437 (662)
Q Consensus 359 l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~~~~~~~v~G~GeLhL~vl~e~Lrre- 437 (662)
++++++++|++++++.|+++ .+..||.++|.++.++||...+....+++++|+|||||||+|+++||||+
T Consensus 405 ~~~i~~~~P~~~~av~p~~~---------~d~~kl~~~L~~L~eed~~~v~~~~et~e~il~g~GeLHLeI~~erL~~ey 475 (548)
T 3vqt_A 405 FVGIPNFAPEHFRRVRLKNP---------LKAKQLQKGLEQLAEEGAVQLFRPLVNNDYILGAVGVLQFDVIVARLADEY 475 (548)
T ss_dssp BCCCEEECCSEEEEEEESCG---------GGHHHHHHHHHHHHHTTSSEEEEESSSCCCEEEESSTHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCcceeeeeeCCc---------hhHHHHHHHHHHhhhcCceeEEEECCCCcEEEEEECHHHHHHHHHHHHHHh
Confidence 99999999999999999875 68899999999999999854443346778999999999999999999886
Q ss_pred CeEEE-----EeCCEEEEEE
Q 006068 438 GFELS-----VSPPKVMYKT 452 (662)
Q Consensus 438 g~ev~-----vs~P~V~yrE 452 (662)
|+|+. ++.|+|+|||
T Consensus 476 ~vev~~e~v~~~~P~V~YrE 495 (548)
T 3vqt_A 476 GVDAVYEGVSTHTARWVYCE 495 (548)
T ss_dssp CCCEEEEECSCCEEEEEECS
T ss_pred CCCEEEeeccccCceEEecC
Confidence 99876 5789999999
No 12
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=100.00 E-value=2.6e-60 Score=534.55 Aligned_cols=361 Identities=22% Similarity=0.321 Sum_probs=292.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC----------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCCC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG 128 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPG 128 (662)
+++||+|+||+|||||||+++|+...+... ...+++|+.+.|+++|+|+......+.|+++.++||||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG 91 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG 91 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence 578999999999999999999998765321 1256889999999999999999999999999999999999
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh----
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN---- 204 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~---- 204 (662)
|.+|..++.++++.+|++|+|+|+.+|++.|+..+|..+...++|+++|+||+|+...+.. ++.+++.+.+..
T Consensus 92 ~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~~~~---~~~~~i~~~l~~~~~~ 168 (529)
T 2h5e_A 92 HEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIRDPM---ELLDEVENELKIGCAP 168 (529)
T ss_dssp STTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCSCHH---HHHHHHHHHHCCEEEE
T ss_pred ChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccccHH---HHHHHHHHHhCCCccc
Confidence 9999999999999999999999999999999999999999999999999999999877653 233333332210
Q ss_pred ------------------------c----CC-----------CC-----------------------------------c
Q 006068 205 ------------------------L----GA-----------TD-----------------------------------E 210 (662)
Q Consensus 205 ------------------------~----g~-----------~~-----------------------------------~ 210 (662)
+ |. .+ .
T Consensus 169 ~~~pi~sa~~~~Gv~dl~~~~~~~~~~~~g~~~~~~~~i~~~~~~~l~e~~~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 248 (529)
T 2h5e_A 169 ITWPIGCGKLFKGVYHLYKDETYLYQSGKGHTIQEVRIVKGLNNPDLDAAVGEDLAQQLRDELELVKGASNEFDKELFLA 248 (529)
T ss_dssp SEEEESCGGGCCEEEETTTTEEEECCTTCCSSCCCCCEECCSSCHHHHHHHCHHHHHHHHHHHHHHHHHSCCCCHHHHHT
T ss_pred eecceecccCcceeeehhhhhHhhhcccCCCcccccccCCCCCHHHHHHhhCHHHHHHhhcccchhhhhhhhhhHHHHHh
Confidence 0 10 00 0
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCC---------CCCceeEEEeeee---ecccce
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASL---------DAPFQMLVTMMEK---DFYLGR 278 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~---------~~p~~~~V~~~~~---~~~~G~ 278 (662)
...+||+++||.+|. |+++||++|.+++|+|.... ++||.++|||+.. +++.|+
T Consensus 249 ~~~~Pv~~gSA~~~~--------------Gv~~LLd~i~~~~P~P~~~~~~~~~~~~~~~~~~~~vfKi~~~~d~~~~G~ 314 (529)
T 2h5e_A 249 GEITPVFFGTALGNF--------------GVDHMLDGLVEWAPAPMPRQTDTRTVEASEDKFTGFVFKIQANMDPKHRDR 314 (529)
T ss_dssp TSEEEEEECBTTTTB--------------SHHHHHHHHHHHSCSSCCEEBSSCEECTTCCSCEEEEEEECSSCCSSSSCC
T ss_pred CceeEEEeeecccCC--------------CHHHHHHHHHHhCCCCCcccccccccCCCCCCeEEEEEEEeeccCcCCCce
Confidence 012699999999998 99999999999999996421 5799999999976 467999
Q ss_pred EEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCCC
Q 006068 279 ILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTA 358 (662)
Q Consensus 279 i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~ 358 (662)
++++||+||+|++||.|++.+.+ +..||++|+.+.|.+++++++|.|||||+|.|++++.+|||||+.+ +..
T Consensus 315 i~~~RV~sG~l~~g~~v~~~~~~-------~~~~v~~i~~~~g~~~~~v~~a~aGdiv~i~~l~~~~~Gdtl~~~~-~~~ 386 (529)
T 2h5e_A 315 VAFMRVVSGKYEKGMKLRQVRTA-------KDVVISDALTFMAGDRSHVEEAYPGDILGLHNHGTIQIGDTFTQGE-MMK 386 (529)
T ss_dssp CEEEEEEESCEETTCEEEETTTT-------EEEECSCEECCCC-----CCEECTTCEEEECCSSCCCTTCEEESSC-CCC
T ss_pred EEEEEEecCeEcCCCEEEEeeCC-------CEEEeceeeEEeCCCceEcceECCCCEEEEeccCCCccCCEeecCC-ccc
Confidence 99999999999999999998642 5789999999999999999999999999999999999999999877 567
Q ss_pred CCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhc
Q 006068 359 LPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE 437 (662)
Q Consensus 359 l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrre 437 (662)
++++++++|+++++|.+.+. .+..||.++|.|+++||+ +++..+ .+++++|+|||||||+|+++||+|+
T Consensus 387 ~~~~~~~~P~~~~~v~~~~~---------~d~~kl~~~L~~L~~ed~-~~~~~~~~t~~~il~~~Gelhlev~~~rl~~e 456 (529)
T 2h5e_A 387 FTGIPNFAPELFRRIRLKDP---------LKQKQLLKGLVQLSEEGA-VQVFRPISNNDLIVGAVGVLQFDVVVARLKSE 456 (529)
T ss_dssp BCCCEEECCSEEEEEEESCC------------CTHHHHHHHHHHTTS-CEEEEETTSCCEEEEESSTHHHHHHHHHHHHH
T ss_pred cCCCCCCCccEEEEEEECCh---------HHHHHHHHHHHHHHhhCC-EEEEEeCCCCcEEEEEECHHHHHHHHHHHHHH
Confidence 88999999999999998765 678999999999999997 888876 6778999999999999999999886
Q ss_pred -CeEEEEeCCEEEEEE-ec
Q 006068 438 -GFELSVSPPKVMYKT-EN 454 (662)
Q Consensus 438 -g~ev~vs~P~V~yrE-~~ 454 (662)
|+++.+++|+|+||| |.
T Consensus 457 y~v~v~~~~~~v~y~eti~ 475 (529)
T 2h5e_A 457 YNVEAVYESVNVATARWVE 475 (529)
T ss_dssp SSCCEEEECCCCSEEEEEE
T ss_pred hCcEEEEecCceeEEEEEc
Confidence 999999999999999 53
No 13
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=100.00 E-value=1.1e-60 Score=537.13 Aligned_cols=362 Identities=23% Similarity=0.313 Sum_probs=313.7
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC----------CccccccccccccccceeEeeeEEEEEecCeeEEEEeCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI----------PHERAMDSISLERERGITIASKVTGISWRENELNMVDTP 127 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~----------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTP 127 (662)
+++|||+|+||+|+|||||+++|++.++... ...+++|+.+.|+++|+|+......+.|+++.++|||||
T Consensus 11 ~~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 11 AMRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp HTEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred hcCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 3589999999999999999999998877421 134678999999999999999999999999999999999
Q ss_pred CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh---
Q 006068 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN--- 204 (662)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~--- 204 (662)
||.+|..++.++++.+|++|+|+|+.+|+..++..+|..+...++|+|+|+||+|+..++... ..+++.+.+..
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~~~~~~---~l~ei~~~l~~~~~ 167 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDTRPSIE---LLDEIESILRIHCA 167 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCCSCHHH---HHHHHHHHHCCEEE
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCccccHHH---HHHHHHHhhCCCce
Confidence 999999999999999999999999999999999999999999999999999999998776633 33333332210
Q ss_pred -----cCC------------------CC---------------------------------------------------c
Q 006068 205 -----LGA------------------TD---------------------------------------------------E 210 (662)
Q Consensus 205 -----~g~------------------~~---------------------------------------------------~ 210 (662)
.|. .. .
T Consensus 168 ~~~~pig~~~~f~gv~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 247 (528)
T 3tr5_A 168 PVTWPIGMGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPELDKKLGDLASELRNEIELVKGASHPFEREGYLK 247 (528)
T ss_dssp ESEEEESCGGGCCEEEETTTTEEEECCTTSSSSTTCSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHHHSCCCCHHHHHT
T ss_pred eeecccccCCceeEEEEeecCEEEEecCCCCCcccccccccccchHHHHHHHHHHHHHHhhhcchhhhhhhHHHHHHHhc
Confidence 000 00 0
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCC---------CCCCceeEEEeeee--ec-ccce
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS---------LDAPFQMLVTMMEK--DF-YLGR 278 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~---------~~~p~~~~V~~~~~--~~-~~G~ 278 (662)
...+||+++||++|. |+++||++|.+++|+|... .+.||.++|||+.. |+ |.|+
T Consensus 248 ~~~~PV~~gSA~~~~--------------GV~~Lld~i~~~~p~p~~~~~~~~~~~~~~~~~~~~VFKi~~~~dp~~~g~ 313 (528)
T 3tr5_A 248 GELTPIFFGSAINNF--------------GVGELLDAFVKEAPPPQGRETNSRLVKPEEEKFSGFVFKIQANMDPGHRDR 313 (528)
T ss_dssp TSEEEEEECBGGGTB--------------SHHHHHHHHHHHSCCCCCBCBSSSCBCTTSSSCEEEEEEEEECCC-CCCCE
T ss_pred CceeEEEeccccCCc--------------cHHHHHHHHHHhCCCCCcccccceeeCCCcccceeEEEEEecccCccCCce
Confidence 012499999999999 9999999999999999753 25899999999985 88 9999
Q ss_pred EEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCCccCceeeecCCCCC
Q 006068 279 ILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKPSIGHTVANTEVTTA 358 (662)
Q Consensus 279 i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~~~~~~ 358 (662)
++++||+||+|++|+.|++.+.+ +.+||.+++.+.|.+++++++|.|||||++.|++++++|||||+. .+..
T Consensus 314 l~~~RV~sG~l~~g~~v~~~~~~-------~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~-~~~~ 385 (528)
T 3tr5_A 314 IAFLRIASGQYQKGMKAYHVRLK-------KEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQG-ERFK 385 (528)
T ss_dssp EEEEEEEESCEETTEEEEETTTT-------EEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESS-CCCC
T ss_pred EEEEEEecCeEcCCCEEEecCCC-------ceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCC-CCcc
Confidence 99999999999999999998643 678999999999999999999999999999999999999999984 4566
Q ss_pred CCCCcCCCCeeeeeeeecCCCCCCCCCcccchhhHHhHhhhhhccCceEEEEec-CCCeEEEEecChhhHHHHHHHHHhc
Q 006068 359 LPTIELDPPTISMTFGVNDSPLAGRDGTHLTGGKIGARLMSEAETNLAINVIPG-MAETYEVQGRGELQLGILIENMRRE 437 (662)
Q Consensus 359 l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~~kl~~~L~k~~~~d~sl~v~~~-~~~~~~v~G~GeLhL~vl~e~Lrre 437 (662)
++++++++|.+++++.+.++ .+..||.++|.|+.+|||+ ++..+ .+++++|+|||||||+|+++||+++
T Consensus 386 ~~~~~~~~P~~~~~i~~~~~---------~d~~kl~~aL~~L~~ED~~-~~~~~~~~~~~il~~~G~lhlev~~~rL~~e 455 (528)
T 3tr5_A 386 FTGIPNFASELFRLVRLKDP---------LKQKALLKGLTQLSEEGAT-QLFRPLDSNELILGAVGLLQFDVVAYRLENE 455 (528)
T ss_dssp BCCCEEECCSEEEEEEESCG---------GGHHHHHHHHHHHHHTTSC-EEEEETTCCCEEEEESSTHHHHHHHHHHHHH
T ss_pred cCCCCCCCCCEEEEEEECCh---------hHHHHHHHHHHHHHhcCCe-EEEEcCCCCCEEEEEEcHHHHHHHHHHHHHH
Confidence 78888889999999998664 6889999999999999986 67665 6778999999999999999999876
Q ss_pred -CeEEEEeCCEEEEEE-ec
Q 006068 438 -GFELSVSPPKVMYKT-EN 454 (662)
Q Consensus 438 -g~ev~vs~P~V~yrE-~~ 454 (662)
|+++.+++|+|.|++ ++
T Consensus 456 y~v~v~~~~~~v~~~~~i~ 474 (528)
T 3tr5_A 456 YNVKCVYESVNVVTARWVI 474 (528)
T ss_dssp HCCCEEEECCSCCEEEEEE
T ss_pred hCcEEEEecCceEEEEEec
Confidence 999999999999998 53
No 14
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=100.00 E-value=1.4e-39 Score=359.23 Aligned_cols=282 Identities=21% Similarity=0.301 Sum_probs=234.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC-------------------ccccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
+..+||+++||+|||||||+++|++.++.... ..+++|..+.|+++|+|++.....+.+++
T Consensus 15 k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~ 94 (439)
T 3j2k_7 15 KEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK 94 (439)
T ss_pred CceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC
Confidence 45789999999999999999999998774211 23588999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCch-------hhHHHHHHHHHHcCCC-cEEEeccCCCCCC--CH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLR-PILLLNKVDRPAV--SE 188 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~-------~qt~~~l~~~~~~~lp-~IvviNKiD~~~~--~~ 188 (662)
++++|||||||.+|...+..+++.+|++||||||.+|++ +||++++..+...++| +|+|+||+|+... +.
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl~~~~~~~ 174 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSN 174 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCCcccchHH
Confidence 999999999999999999999999999999999999987 7999999999999999 7899999999543 45
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEE
Q 006068 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVT 268 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~ 268 (662)
.+++++.+++.+++..+|+.... ++|++++||++|.+..+..... .|.....|++. ++.+|+|....++||++.|.
T Consensus 175 ~~~~~i~~~~~~~l~~~g~~~~~-~~~~i~iSA~~G~ni~~l~~~~--~w~~g~~L~~~-l~~i~~~~~~~~~p~r~~v~ 250 (439)
T 3j2k_7 175 ERYEECKEKLVPFLKKVGFNPKK-DIHFMPCSGLTGANLKEQSDFC--PWYIGLPFIPY-LDNLPNFNRSVDGPIRLPIV 250 (439)
T ss_pred HHHHHHHHHHHHHHHHhcccccC-CeeEEEeeccCCcccccccccc--cccCchHHHHH-HHhCCCCccCCCCCeEEEEE
Confidence 56777888888888888875322 5789999999999655432210 11122346664 46688888888999999999
Q ss_pred eeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEE--EcCcC--CC
Q 006068 269 MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIIS--VAGMT--KP 344 (662)
Q Consensus 269 ~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIva--i~gl~--~~ 344 (662)
+++. +.|+++.|||.+|+|++||.|.+.+.+ ...+|++|+.+ +.++++|.|||+|+ +.|++ ++
T Consensus 251 ~~~~--~~G~v~~G~v~~G~l~~Gd~v~~~p~~-------~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~gi~~~~i 317 (439)
T 3j2k_7 251 DKYK--DMGTVVLGKLESGSIFKGQQLVMMPNK-------HNVEVLGILSD----DTETDFVAPGENLKIRLKGIEEEEI 317 (439)
T ss_pred EEEc--CCCeEEEEEEEeeEEecCCEEEEccCC-------ceEEEEEEEEC----CeEcCEecCCCcceEEEeccchhhc
Confidence 9875 479999999999999999999998753 46789998764 36899999999998 57776 67
Q ss_pred ccCceeeecCCC
Q 006068 345 SIGHTVANTEVT 356 (662)
Q Consensus 345 ~~GdTl~~~~~~ 356 (662)
+.||+||+++++
T Consensus 318 ~rG~vl~~~~~~ 329 (439)
T 3j2k_7 318 LPGFILCDPSNL 329 (439)
T ss_pred CCcEEecCCCCC
Confidence 889999998754
No 15
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=100.00 E-value=4.1e-39 Score=352.30 Aligned_cols=285 Identities=31% Similarity=0.392 Sum_probs=234.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHh---cCC--CCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQ---CGA--DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~---~g~--~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
..+||+++||+|||||||+++|++. .|. .......+|..+.|+++|+|++.....+.++++.++|||||||.+|.
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4689999999999999999999984 221 11122367888999999999999888888889999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+.++++.+|++|+|||+.+|.+.|++++|..+...++| +|+|+||+|+.+ +.+.++.+.+++.+++..+++..+
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~-- 166 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVD-DPELLDLVEMEVRDLLNQYEFPGD-- 166 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCC-CHHHHHHHHHHHHHHHHHTTSCTT--
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccC-cHHHHHHHHHHHHHHHHHhccccc--
Confidence 9999999999999999999999999999999999999999 679999999964 444455566778888877775322
Q ss_pred CccEEEcccccCccCCcc----CCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeece
Q 006068 213 DFPVLYASAKEGWASSTF----TKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGV 288 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~----~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~ 288 (662)
++|++++||++|.+.... ......+..++.+|+++|.+++|.|..+.++||+++|++++.+++.|++++|||++|+
T Consensus 167 ~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~ 246 (405)
T 2c78_A 167 EVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPVRDVDKPFLMPVEDVFTITGRGTVATGRIERGK 246 (405)
T ss_dssp TSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCCCCCSSCCEEECCEEEEETTTEEEEEEECCBSE
T ss_pred CCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCCCCCCCCcEEEEEEEEEcCCCceEEEEEEeccc
Confidence 368999999999741100 0000111224899999999999999888899999999999999999999999999999
Q ss_pred eccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc--Cc--CCCccCceeeecC
Q 006068 289 VSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GM--TKPSIGHTVANTE 354 (662)
Q Consensus 289 l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~GdTl~~~~ 354 (662)
|++||.|.+.+.+.+ ....+|++|..+. .++++|.|||+|++. |+ +++.+||+||+++
T Consensus 247 l~~gd~v~~~~~~~~----~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~g~~~~~i~~G~~l~~~~ 308 (405)
T 2c78_A 247 VKVGDEVEIVGLAPE----TRKTVVTGVEMHR----KTLQEGIAGDNVGVLLRGVSREEVERGQVLAKPG 308 (405)
T ss_dssp EETTCEEEEESSSSS----CEEEEEEEEEETT----EEESEEETTCEEEEEESSCCTTTCCTTCEEESTT
T ss_pred ccCCCEEEEeCCCCC----eeeEEEEEEEECC----cccCEEcCCCEEEEEECCCcHhhcCceEEEEcCC
Confidence 999999999875321 1467899987653 689999999999874 65 6899999999875
No 16
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=100.00 E-value=3e-39 Score=352.38 Aligned_cols=278 Identities=29% Similarity=0.389 Sum_probs=233.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCC----CCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGA----DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~----~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
..||+++||+|||||||+++|++.... .....+.+|....|+++|+|+......+.++++.++|||||||.+|...
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~ 82 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKN 82 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHH
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHHH
Confidence 469999999999999999999985321 1112235788899999999999988888888899999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+.++++.+|++|+|||+.+|.++||+++|..+...++|. |+|+||+|+.+ +.+.++.+.+++.+++..+++..+ ++
T Consensus 83 ~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~-~~~~~~~~~~~~~~~l~~~~~~~~--~~ 159 (397)
T 1d2e_A 83 MITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQ-DSEMVELVELEIRELLTEFGYKGE--ET 159 (397)
T ss_dssp HHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCS-CHHHHHHHHHHHHHHHHHTTSCTT--TS
T ss_pred HHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCC-CHHHHHHHHHHHHHHHHHcCCCcc--cC
Confidence 999999999999999999999999999999999999995 78999999964 444555666778888887776432 47
Q ss_pred cEEEcccccCccCCccCCCCCCCccc-hHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGD 293 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~g-v~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd 293 (662)
|++++||++|++..+ ..+..| +.+|+++|.+++|.|..+.++||+++|++++.+++.|++++|||++|+|++||
T Consensus 160 ~~i~~SA~~g~n~~~-----~~~~~g~i~~Ll~~l~~~~p~p~~~~~~p~~~~v~~v~~~~~~G~v~~g~v~~G~l~~gd 234 (397)
T 1d2e_A 160 PIIVGSALCALEQRD-----PELGLKSVQKLLDAVDTYIPVPTRDLEKPFLLPVESVYSIPGRGTVVTGTLERGILKKGD 234 (397)
T ss_dssp CEEECCHHHHHTTCC-----TTTTHHHHHHHHHHHHHHSCCCCCCTTSCCEEECCEEEEETTTEEEEEEECCBSEEETTC
T ss_pred cEEEeehhhcccccC-----CCccCCcHHHHHHHHHHhCCCCCCCCCCcEEEEEEEEEEeCCceEEEEEEEeeceEeCCC
Confidence 899999999874211 112235 89999999999999988889999999999999999999999999999999999
Q ss_pred EEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc--Cc--CCCccCceeeecC
Q 006068 294 KVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--GM--TKPSIGHTVANTE 354 (662)
Q Consensus 294 ~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~--gl--~~~~~GdTl~~~~ 354 (662)
.|.+.+.+ .....+|++|..+. .++++|.|||+|++. |+ +++.+||+||+++
T Consensus 235 ~v~~~~~~-----~~~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~i~~~~i~~G~~l~~~~ 290 (397)
T 1d2e_A 235 ECEFLGHS-----KNIRTVVTGIEMFH----KSLDRAEAGDNLGALVRGLKREDLRRGLVMAKPG 290 (397)
T ss_dssp EEEEEETT-----EEEEEEEEEEEETT----EEESEEETTCEEEEEESSCCGGGCCTTCEEESTT
T ss_pred EEEEeCCC-----CCeEEEEEEEEECC----cccCEecCCCceEEEecccchhccCceeEEeCCC
Confidence 99988642 12567899987653 689999999998875 65 5799999999865
No 17
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=100.00 E-value=6.9e-39 Score=353.55 Aligned_cols=283 Identities=27% Similarity=0.350 Sum_probs=225.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCc-------------------cccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPH-------------------ERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~-------------------~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
+..+||+++||+|||||||+++|++.++..... .+++|..+.|+++|+|++.....+.+++
T Consensus 4 k~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~ 83 (435)
T 1jny_A 4 KPHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK 83 (435)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS
T ss_pred CCEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC
Confidence 356899999999999999999999886532211 1468999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-------chhhHHHHHHHHHHcCCC-cEEEeccCCCCC--CCH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLR-PILLLNKVDRPA--VSE 188 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-------~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~--~~~ 188 (662)
++++|||||||.+|...+.++++.+|++|+|||+.+| ++.||++++..+...++| +|+|+||+|+.+ ++.
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~ 163 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTEPPYDE 163 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSSSTTCH
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCCccccH
Confidence 9999999999999999999999999999999999999 788999999999999986 789999999976 445
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEE
Q 006068 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVT 268 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~ 268 (662)
++++++.+++.+++..+++... ++|++++||++|.+..+..... .+..| ..|+++|. .+|+|....++||+++|.
T Consensus 164 ~~~~~~~~~i~~~~~~~~~~~~--~~~~i~iSA~~g~~v~e~~~~~-~~~~g-~~Ll~~l~-~~~~p~~~~~~~~~~~v~ 238 (435)
T 1jny_A 164 KRYKEIVDQVSKFMRSYGFNTN--KVRFVPVVAPSGDNITHKSENM-KWYNG-PTLEEYLD-QLELPPKPVDKPLRIPIQ 238 (435)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCT--TCEEEECBTTTTBTTTBCCSSC-TTCCS-CCHHHHHT-TCCCCCCGGGSCCBEEEE
T ss_pred HHHHHHHHHHHHHHHHcCCCcC--CceEEEeecccCcccccccccc-ccccc-hhHHHHHh-ccCCCCCCCCCCeEEEEE
Confidence 6667788888888888776432 4789999999998665433221 11112 47888864 466677767899999999
Q ss_pred eeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc--C--cCCC
Q 006068 269 MMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--G--MTKP 344 (662)
Q Consensus 269 ~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~--g--l~~~ 344 (662)
.++..++.|++++|||++|+|++||.|.+.+.+ ...+|++|+.+ ..++++|.|||+|++. | .+++
T Consensus 239 ~v~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~----~~~~~~a~aG~~v~~~l~g~~~~~i 307 (435)
T 1jny_A 239 DVYSISGVGTVPVGRVESGVLKVGDKIVFMPAG-------KVGEVRSIETH----HTKMDKAEPGDNIGFNVRGVEKKDI 307 (435)
T ss_dssp EEEEETTTEEEEEEECCBSCEETTCEEEEETTT-------EEEEEEEEEET----TEEESEECTTCEEEEEEESSCGGGC
T ss_pred EEEEeCCCcEEEEEEEecCeEEcCCEEEECCce-------eEEEEEEEEEC----CcEEeEEcCCCEEEEEEecCCHHHc
Confidence 999999999999999999999999999998743 67899999764 3689999999999883 4 4689
Q ss_pred ccCceeeecCCC
Q 006068 345 SIGHTVANTEVT 356 (662)
Q Consensus 345 ~~GdTl~~~~~~ 356 (662)
.+||+||+++++
T Consensus 308 ~~Gd~l~~~~~~ 319 (435)
T 1jny_A 308 KRGDVVGHPNNP 319 (435)
T ss_dssp CTTCEEECTTSC
T ss_pred CCccEecCCCCC
Confidence 999999987643
No 18
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=100.00 E-value=4e-38 Score=351.96 Aligned_cols=288 Identities=24% Similarity=0.277 Sum_probs=231.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC-------------------CccccccccccccccceeEeeeEEEEEecCe
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWREN 119 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~ 119 (662)
...||+++||+|+|||||+++|++.++... ...+++|....|+++|+|++.....+.++++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 367999999999999999999999865321 1246789999999999999999999999999
Q ss_pred eEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-------chhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHH
Q 006068 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERC 191 (662)
Q Consensus 120 ~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-------~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~ 191 (662)
.++|||||||.+|...+..+++.+|++|||||+.+| ...|+++++..+...+++ +|||+||+|+.+++...+
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl~~~~~~~~ 191 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQRF 191 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCcccchHHHH
Confidence 999999999999999999999999999999999998 668999999999999976 788999999988778888
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCC----CCCCccchHHHHHHHHhhCCC--CCCCCCCCcee
Q 006068 192 DEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD----PPADVRNMSQLLDAIIRHVPP--PKASLDAPFQM 265 (662)
Q Consensus 192 ~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~----~~~~~~gv~~Lld~I~~~lP~--p~~~~~~p~~~ 265 (662)
+++.+++.+++..+|+... .+|++++||++|.+..+.... +|+.+..+.++|+.+...+|. |....+.||++
T Consensus 192 ~~i~~~~~~~l~~~g~~~~--~~~~i~iSA~~g~gi~el~~~~~~~~wy~g~~L~~~L~~i~~~~~~~~p~~~~~~p~r~ 269 (483)
T 3p26_A 192 EEIKSKLLPYLVDIGFFED--NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFLF 269 (483)
T ss_dssp HHHHHHHHHHHHHHTCCGG--GEEEEECCSSSCTTSSSSCCCHHHHHHCCSCCHHHHHHHHHHHHHHHHTTCCSSSCCEE
T ss_pred HHHHHHHHHHHHHcCCCcc--cceEEEEeeecCCCccccCcccccccccCCCCHHHHHHHHHhhcccccccccCCCceEE
Confidence 8888888888888877543 368999999999977654332 234444678888888888876 66778899999
Q ss_pred EEEeeeeec---ccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeec----CCceeeecccCCCCEEEE
Q 006068 266 LVTMMEKDF---YLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKK----GTGMVLIDSAGAGDIISV 338 (662)
Q Consensus 266 ~V~~~~~~~---~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~----g~~~~~v~~a~AGdIvai 338 (662)
.|..++..+ +.|+++.|||.+|+|++||.|.+.+.+ ...+|++|..+. |.++.++++|.|||+|+|
T Consensus 270 ~v~~v~~~~~~~g~g~v~~G~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~~~~~~~~~~~~~~~a~aG~~v~~ 342 (483)
T 3p26_A 270 SVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE-------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVTL 342 (483)
T ss_dssp EEEEEEC---CCSCCEEEEEEEEESEECTTCEEEEETTT-------EEEEEEEEEETTTC-----CCEESCEETTCEEEE
T ss_pred EEEEEEccCCcCCCceEEEEEEecceEccCCEEEEeCCC-------CeEEEEEEEEcCccccccccccccEECCCCEEEE
Confidence 999999877 489999999999999999999999753 567899998874 566789999999999988
Q ss_pred ----cCcCCCccCceeeecCC
Q 006068 339 ----AGMTKPSIGHTVANTEV 355 (662)
Q Consensus 339 ----~gl~~~~~GdTl~~~~~ 355 (662)
.+.+++..||+||++++
T Consensus 343 ~l~~~~~~di~rG~vl~~~~~ 363 (483)
T 3p26_A 343 KLRKAYPEDIQNGDLAASVDY 363 (483)
T ss_dssp EEESCCGGGCCTTCEEECTTC
T ss_pred EEEecccccCCceEEEEcCCC
Confidence 34478999999998875
No 19
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=100.00 E-value=1.4e-38 Score=353.83 Aligned_cols=284 Identities=25% Similarity=0.325 Sum_probs=204.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC-------------------CccccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
+..+||+++||+|||||||+++|++.++... ...+++|..+.|+++|+|+......+.+++
T Consensus 41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~ 120 (467)
T 1r5b_A 41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH 120 (467)
T ss_dssp CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence 4568999999999999999999998765321 124678999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCch-------hhHHHHHHHHHHcCCC-cEEEeccCCCCC--CCH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPL-------AQTKFVLAKALKYGLR-PILLLNKVDRPA--VSE 188 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~-------~qt~~~l~~~~~~~lp-~IvviNKiD~~~--~~~ 188 (662)
++++|||||||.+|...+.++++.+|++|||||+.+|++ +||++++..+...++| +|||+||+|+.. ++.
T Consensus 121 ~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~~ 200 (467)
T 1r5b_A 121 RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSE 200 (467)
T ss_dssp EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSCH
T ss_pred eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCccccH
Confidence 999999999999999999999999999999999999975 7999999999999998 789999999954 456
Q ss_pred HHHHHHHHHHHHHHHhc-CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEE
Q 006068 189 ERCDEVESLVFDLFANL-GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLV 267 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~-g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V 267 (662)
++++++.+++.+++..+ |+.. ..++|++++||++|.+..+........|.....|++.| +.+|.|..+.++||+++|
T Consensus 201 ~~~~~i~~e~~~~l~~~~g~~~-~~~~~~i~vSA~~g~~i~~l~~~~~~~w~~g~~L~~~l-~~i~~~~~~~~~p~~~~v 278 (467)
T 1r5b_A 201 ERYKECVDKLSMFLRRVAGYNS-KTDVKYMPVSAYTGQNVKDRVDSSVCPWYQGPSLLEYL-DSMTHLERKVNAPFIMPI 278 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCH-HHHEEEEECBTTTTBTTSSCCCTTTCSSCCSCCHHHHH-HHCCCCHHHHTSCCEEEC
T ss_pred HHHHHHHHHHHHHHHHhcCCCc-cCCceEEecccccccccccccccccCccccchhHHHHH-HhCCCCcCCCCCCcEEEE
Confidence 67778888888888777 7641 11378999999999987665432111111123466554 568888777789999999
Q ss_pred EeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cC-cCCC
Q 006068 268 TMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AG-MTKP 344 (662)
Q Consensus 268 ~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~g-l~~~ 344 (662)
.+++.+ .|++++|||.+|+|++||.|.+.+.+ ...+|++|+.+ ...++++|.|||+|++ .| .+++
T Consensus 279 ~~~~~~--~G~v~~G~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~---~~~~~~~a~aG~~v~i~l~g~~~~i 346 (467)
T 1r5b_A 279 ASKYKD--LGTILEGKIEAGSIKKNSNVLVMPIN-------QTLEVTAIYDE---ADEEISSSICGDQVRLRVRGDDSDV 346 (467)
T ss_dssp CEEEES--SSEEEEEECCBSEEETTEEEEEETTT-------EEEEEEEEECT---TCCEESEEETTCEEEEEEESCCTTC
T ss_pred EEEEeC--CCeEEEEEEeeeEEeeCCEEEEccCC-------eeEEEEEEecc---CCcEeeEEcCCCEEEEEEeccHhhC
Confidence 998764 69999999999999999999998743 56789999764 2468999999999988 56 6689
Q ss_pred ccCceeeecCC
Q 006068 345 SIGHTVANTEV 355 (662)
Q Consensus 345 ~~GdTl~~~~~ 355 (662)
..||+||++++
T Consensus 347 ~rG~vl~~~~~ 357 (467)
T 1r5b_A 347 QTGYVLTSTKN 357 (467)
T ss_dssp CTTCEEECSSS
T ss_pred CceEEEeCCCC
Confidence 99999998764
No 20
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=100.00 E-value=8.4e-39 Score=364.50 Aligned_cols=283 Identities=24% Similarity=0.303 Sum_probs=200.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC-------------------ccccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP-------------------HERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~-------------------~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
+.++||+|+||+|||||||+++|++.++.... ..+++|..+.|+++|+|++.....+.+++
T Consensus 175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~ 254 (592)
T 3mca_A 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK 254 (592)
T ss_dssp CCEEEEEEECCSSSTHHHHHHHHHHHHHCC--------------------------------------------------
T ss_pred CCccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC
Confidence 45789999999999999999999987653211 14689999999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCc-------hhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-------LAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEER 190 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~-------~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~ 190 (662)
+.++|||||||.+|...+..+++.+|++|||||+.+|. ++||++++..+...++| +|||+||+|+.+++..+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl~~~~~~~ 334 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDLMSWSEDR 334 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGGGTTCHHH
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEeccccccccHHH
Confidence 99999999999999999999999999999999999864 89999999999999998 77899999998878888
Q ss_pred HHHHHHHHHHHH-HhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEe
Q 006068 191 CDEVESLVFDLF-ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTM 269 (662)
Q Consensus 191 ~~ei~~~v~~l~-~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~ 269 (662)
+.++.+++.+++ ..+|+... .+|++++||++|.+..+........|.....|++.|...+| |....++||+++|.+
T Consensus 335 ~~~i~~el~~~l~~~~g~~~~--~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~p-p~~~~~~p~r~~v~~ 411 (592)
T 3mca_A 335 FQEIKNIVSDFLIKMVGFKTS--NVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLVP-PEKPYRKPLRLSIDD 411 (592)
T ss_dssp HHHHHHHHHHHHTTTSCCCGG--GEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSCC-CSCTTTSCCEEEEEE
T ss_pred HHHHHHHHHHHHHHhhCCCcc--ceEEEEEecccCcccccccccccccccchHHHHHHHHhhcc-ccccccccchheeeE
Confidence 888888898888 77777543 36899999999996543222111112223479999988777 666778999999999
Q ss_pred eeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeec-ccCCCCEEEE--cCcC--CC
Q 006068 270 MEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLID-SAGAGDIISV--AGMT--KP 344 (662)
Q Consensus 270 ~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~-~a~AGdIvai--~gl~--~~ 344 (662)
++.. +.|++++|||.+|+|++||.|.+.+.+ ...+|++|+.++ .+++ +|.|||+|++ .|++ ++
T Consensus 412 v~~~-~~g~v~~G~v~~G~l~~Gd~v~i~p~~-------~~~~V~~i~~~~----~~~~~~a~aG~~v~~~l~~i~~~~i 479 (592)
T 3mca_A 412 VYRS-PRSVTVTGRVEAGNVQVNQVLYDVSSQ-------EDAYVKNVIRNS----DPSSTWAVAGDTVTLQLADIEVNQL 479 (592)
T ss_dssp EEEE-TTEEEEEEEEEESEEETTCEEEETTTT-------EEEEEEEEECSS----SCSCCEEETTCEEEEEESSSCGGGC
T ss_pred EEec-CCeEEEEEEEeeeeEccCCEEEEccCC-------ceEEEEEEEEcC----ccCcceecCCCEEEEEEcccccccc
Confidence 9999 999999999999999999999998743 567899998653 5889 9999999985 5764 68
Q ss_pred ccCceeeecCC
Q 006068 345 SIGHTVANTEV 355 (662)
Q Consensus 345 ~~GdTl~~~~~ 355 (662)
..||+||+++.
T Consensus 480 ~rG~vl~~~~~ 490 (592)
T 3mca_A 480 RPGDILSNYEN 490 (592)
T ss_dssp CTTCEEECSSS
T ss_pred ceEEEeccCCC
Confidence 99999998765
No 21
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=2.4e-37 Score=341.24 Aligned_cols=281 Identities=21% Similarity=0.269 Sum_probs=226.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC---------------------ccccccccccccccceeEeeeEEEEEe
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---------------------HERAMDSISLERERGITIASKVTGISW 116 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---------------------~~~v~D~~~~E~ergiTi~~~~~~~~~ 116 (662)
+..+||+++||+|||||||+++|++..+.... ...++|..+.|+++|+|++.....+.+
T Consensus 22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~ 101 (434)
T 1zun_B 22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST 101 (434)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence 45689999999999999999999988642110 113578999999999999999999999
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHH
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVE 195 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~ 195 (662)
++.+++|||||||.+|...+.++++.+|++|||||+.+|.++||.+++..+...++| +|+|+||+|+.+++.+++.++.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl~~~~~~~~~~i~ 181 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIK 181 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTTTTSCHHHHHHHH
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcCCcccHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999986 7889999999877666667777
Q ss_pred HHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCC-CCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeec
Q 006068 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDF 274 (662)
Q Consensus 196 ~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~ 274 (662)
+++.+++..+++.. .++|++++||++|.+..+.... +++.. ..|++ +++.+|.|..+.+.||++.|..++...
T Consensus 182 ~~~~~~~~~~g~~~--~~~~~i~vSA~~g~gi~~~~~~~~w~~g---~~L~~-~l~~i~~~~~~~~~~~~~~v~~v~~~~ 255 (434)
T 1zun_B 182 ADYLKFAEGIAFKP--TTMAFVPMSALKGDNVVNKSERSPWYAG---QSLME-ILETVEIASDRNYTDLRFPVQYVNRPN 255 (434)
T ss_dssp HHHHHHHHTTTCCC--SEEEEEECCTTTCTTTSSCCTTCTTCCS---CCTTH-HHHHSCCTTCCCSSSCEEECCEEECSS
T ss_pred HHHHHHHHHhCCCc--cCceEEEEeccCCCCcccccccCccccC---chHHH-HHhcCCCcccCCCCCcEEEEEEEeccC
Confidence 88888888776311 1368999999999976654332 22222 22444 345678888778899999999988777
Q ss_pred ccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcC--CCccCceeee
Q 006068 275 YLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMT--KPSIGHTVAN 352 (662)
Q Consensus 275 ~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~--~~~~GdTl~~ 352 (662)
+.|+...|||.+|+|++||.|.+.+.+ ...+|++|..+. .++++|.|||+|++...+ ++..||+||+
T Consensus 256 ~~~~g~~G~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~~----~~~~~a~aG~~v~~~l~~~~~i~~G~~l~~ 324 (434)
T 1zun_B 256 LNFRGFAGTLASGIVHKGDEIVVLPSG-------KSSRVKSIVTFE----GELEQAGPGQAVTLTMEDEIDISRGDLLVH 324 (434)
T ss_dssp SSCCEEEEECCBSCEETTCEEEETTTC-------CEEEEEEEEETT----EEESEECTTCEEEEEESSCCCCCTTCEEEE
T ss_pred CCceEEEEEEecceEeCCCEEEEecCC-------eEEEEEEEEEcC----cceeEecCCCEEEEEeCCccccCCccEEEC
Confidence 778889999999999999999998743 467999998875 379999999999986543 5789999998
Q ss_pred cCC
Q 006068 353 TEV 355 (662)
Q Consensus 353 ~~~ 355 (662)
+++
T Consensus 325 ~~~ 327 (434)
T 1zun_B 325 ADN 327 (434)
T ss_dssp TTS
T ss_pred CCC
Confidence 765
No 22
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=100.00 E-value=5.3e-37 Score=340.34 Aligned_cols=283 Identities=25% Similarity=0.334 Sum_probs=237.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCC-------------------CccccccccccccccceeEeeeEEEEEecCe
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWREN 119 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~ 119 (662)
...||+++||+|||||||+++|++.++... ....++|..+.|+++|+|++.....+.++++
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~ 85 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSE
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCc
Confidence 357999999999999999999998754321 1124678889999999999999999999999
Q ss_pred eEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchh-------hHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHH
Q 006068 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLA-------QTKFVLAKALKYGLR-PILLLNKVDRPAVSEERC 191 (662)
Q Consensus 120 ~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~-------qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~ 191 (662)
+++|||||||.+|...+..+++.+|++|||||+.+|.++ ||++++..+...++| +|+|+||+|+.+++.+++
T Consensus 86 ~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl~~~~~~~~ 165 (458)
T 1f60_A 86 QVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDSVKWDESRF 165 (458)
T ss_dssp EEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGGGTTCHHHH
T ss_pred eEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEccccccCCHHHH
Confidence 999999999999999999999999999999999999877 999999999999998 788999999986677777
Q ss_pred HHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCC-CCCCc------c---chHHHHHHHHhhCCCCCCCCCC
Q 006068 192 DEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD-PPADV------R---NMSQLLDAIIRHVPPPKASLDA 261 (662)
Q Consensus 192 ~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~-~~~~~------~---gv~~Lld~I~~~lP~p~~~~~~ 261 (662)
+++.+++.+++..+++..+ ++|++++||++|.+..+.... +++.. . ....|+++| +.+|+|....+.
T Consensus 166 ~~i~~~~~~~l~~~g~~~~--~~~~i~vSA~~g~nv~~~~~~~~~~~~~~~~~~tg~~~~~~Ll~~l-~~~~~p~~~~~~ 242 (458)
T 1f60_A 166 QEIVKETSNFIKKVGYNPK--TVPFVPISGWNGDNMIEATTNAPWYKGWEKETKAGVVKGKTLLEAI-DAIEQPSRPTDK 242 (458)
T ss_dssp HHHHHHHHHHHHHHTCCGG--GCCEEECCTTTCBTTTBCCSSCTTCCCEEEECSSSEEEESSHHHHH-HTSCCCCCCTTS
T ss_pred HHHHHHHHHHHHHcCCCcc--CceEEEeecccCcCcccccccCchhhcccccccccccchHHHHHHh-hccCCCcccCCC
Confidence 7888888888888776432 368999999999977654332 22210 0 134688885 457888888899
Q ss_pred CceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--c
Q 006068 262 PFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--A 339 (662)
Q Consensus 262 p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~ 339 (662)
||+++|..++..++.|++++|||.+|+++.||.|.+.+.+ ...+|.+|..+. .++++|.|||+|+| .
T Consensus 243 p~r~~i~~v~~~~g~G~v~~G~v~~G~l~~gd~v~~~p~~-------~~~~V~~i~~~~----~~~~~a~aG~~v~i~l~ 311 (458)
T 1f60_A 243 PLRLPLQDVYKIGGIGTVPVGRVETGVIKPGMVVTFAPAG-------VTTEVKSVEMHH----EQLEQGVPGDNVGFNVK 311 (458)
T ss_dssp CCEEEEEEEEEETTTEEEEEEECCBSCBCTTCEEEEETTT-------EEEEEEEEEETT----EECSCBCTTCEEEEEES
T ss_pred CcEEEEEEEEEeCCCcEEEEEEEeCCeEcCCCEEEECCCC-------ceEEEeEEEECC----eEEEEEcCCCEEEEEEc
Confidence 9999999999999999999999999999999999998743 567899997643 58999999999877 4
Q ss_pred Cc--CCCccCceeeecCC
Q 006068 340 GM--TKPSIGHTVANTEV 355 (662)
Q Consensus 340 gl--~~~~~GdTl~~~~~ 355 (662)
|+ ++++.||+|+++++
T Consensus 312 gi~~~~i~rG~vl~~~~~ 329 (458)
T 1f60_A 312 NVSVKEIRRGNVCGDAKN 329 (458)
T ss_dssp SCCTTTSCTTCEEEETTS
T ss_pred CCcccccCceeEEecCCC
Confidence 66 57899999999864
No 23
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-37 Score=353.11 Aligned_cols=289 Identities=24% Similarity=0.272 Sum_probs=245.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCC-------------------CccccccccccccccceeEeeeEEEEEecC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADI-------------------PHERAMDSISLERERGITIASKVTGISWRE 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~-------------------~~~~v~D~~~~E~ergiTi~~~~~~~~~~~ 118 (662)
....||+|+||+|||||||+++|++..+... ...+++|....|+++|+|++.....+.+.+
T Consensus 165 k~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~ 244 (611)
T 3izq_1 165 LPHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR 244 (611)
T ss_dssp CCCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS
T ss_pred CCceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC
Confidence 3467999999999999999999998765321 124678899999999999999999999999
Q ss_pred eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-------chhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHH
Q 006068 119 NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-------PLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEER 190 (662)
Q Consensus 119 ~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-------~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~ 190 (662)
++++|||||||.+|...+..+++.+|++|+|||+.+| ..+|+.+++..+...++| +|||+||+|+.+++...
T Consensus 245 ~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl~~~~~~~ 324 (611)
T 3izq_1 245 ANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDNVDWSQQR 324 (611)
T ss_dssp CEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTTTTTCHHH
T ss_pred ceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccccchhHHH
Confidence 9999999999999999999999999999999999987 468999999999999987 78899999998877778
Q ss_pred HHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCC----CCCCCccchHHHHHHHHhhCCC--CCCCCCCCce
Q 006068 191 CDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTK----DPPADVRNMSQLLDAIIRHVPP--PKASLDAPFQ 264 (662)
Q Consensus 191 ~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~----~~~~~~~gv~~Lld~I~~~lP~--p~~~~~~p~~ 264 (662)
+.++.+++..++..+|+... .+|++++||++|.+...+.. .+|+.+..+.++|+.+...+|. |....+.||+
T Consensus 325 ~~ei~~~l~~~l~~~g~~~~--~~~~i~vSA~tG~gI~el~~~~~~~~Wy~g~~L~~~L~~l~~~~p~~~p~~~~~~p~r 402 (611)
T 3izq_1 325 FEEIKSKLLPYLVDIGFFED--NINWVPISGFSGEGVYKIEYTDEVRQWYNGPNLMSTLENAAFKISKENEGINKDDPFL 402 (611)
T ss_dssp HHHHHHHHHHHHHHHTCCGG--GCEEEECCTTTCTTTSSCTTSCTTCCSCCSCCHHHHHTTSCCCCCCSSSCCSCCSCCE
T ss_pred HHHHHHHHHHHHHhhccccc--CccEEeeecccCCCccccCccccccccccCCcHHHHHHHHhhcccccCcccccccchh
Confidence 88888888888888877543 36899999999998776543 2445555677777777666665 5667789999
Q ss_pred eEEEeeeeec---ccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeec----CCceeeecccCCCCEEE
Q 006068 265 MLVTMMEKDF---YLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKK----GTGMVLIDSAGAGDIIS 337 (662)
Q Consensus 265 ~~V~~~~~~~---~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~----g~~~~~v~~a~AGdIva 337 (662)
++|..++..+ +.|+++.|||.+|+|++||.|.+.+.+ ...+|++|+.+. |.++.++++|.|||+|+
T Consensus 403 ~~V~~v~~~~~~~g~g~v~~G~V~~G~lk~Gd~v~~~p~~-------~~~~VksI~~~~~~~~~~~~~~v~~A~aGd~v~ 475 (611)
T 3izq_1 403 FSVLEIIPSKKTSNDLALVSGKLESGSIQPGESLTIYPSE-------QSCIVDKIQVGSQQGQSTNHEETDVAIKGDFVT 475 (611)
T ss_dssp EECCEEECCSSSCSSSSEEEEEEEESEECTTCEEEETTTT-------EEEEEEEEECSSCCSCSSSCCCCCCEETTCEEE
T ss_pred hheeeeeccCccCCCeeEEEEEEEeceeccCCEEEEecCC-------ceEEEEEEEEcccccccccccccceecCCCcce
Confidence 9999999877 479999999999999999999998753 567899998874 66778999999999998
Q ss_pred E--cCc--CCCccCceeeecCC
Q 006068 338 V--AGM--TKPSIGHTVANTEV 355 (662)
Q Consensus 338 i--~gl--~~~~~GdTl~~~~~ 355 (662)
| .++ .+++.||+||++++
T Consensus 476 l~l~~~~~~di~rGdvl~~~~~ 497 (611)
T 3izq_1 476 LKLRKAYPEDIQNGDLAASVDY 497 (611)
T ss_dssp EEESSCCTTSCCTTCEEBCSTT
T ss_pred EEeeeccHhhCcceEEccCCCC
Confidence 8 444 68999999998876
No 24
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1e-36 Score=358.94 Aligned_cols=280 Identities=28% Similarity=0.386 Sum_probs=220.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhc---CC-CCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQC---GA-DIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~---g~-~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~ 133 (662)
....||+++||+|||||||+++|++.. |. .....+.+|..+.|+++|+|++.....+.+++++++|||||||.+|.
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~ 373 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYV 373 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHH
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHH
Confidence 456899999999999999999999853 21 11112367888999999999999988888889999999999999999
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+.++++.+|++|||||+.+|+++||+++|..+...++| +|||+||+|+.+ +.+.++.+.+++.+++..+++..+
T Consensus 374 ~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~-d~e~le~i~eEi~elLk~~G~~~~-- 450 (1289)
T 3avx_A 374 KNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVD-DEELLELVEMEVRELLSQYDFPGD-- 450 (1289)
T ss_dssp HHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCC-CHHHHHHHHHHHHHHHHHTTSCTT--
T ss_pred HHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccccc-chhhHHHHHHHHHHHHHhcccccc--
Confidence 9999999999999999999999999999999999999999 578999999975 444555667788888888776432
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVG 292 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~G 292 (662)
++|++++||++|++.. ..+..|+.+|+++|.+++|.|..+.++||+++|.+++.+++.|++++|||++|+|++|
T Consensus 451 ~vp~IpvSAktG~ng~------~~w~eGI~eLleaL~~~Ip~P~r~~d~Pfr~pId~Vf~i~G~GtVvtGrV~sGtLkvG 524 (1289)
T 3avx_A 451 DTPIVRGSALKALEGD------AEWEAKILELAGFLDSYIPEPERAIDKPFLLPIEDVFSISGRGTVVTGRVERGIIKVG 524 (1289)
T ss_dssp TCCEEECCSTTTTTCC------HHHHHHHHHHHHHHHHTSCCCCCGGGSCCEEECCEEEEETTTEEEEEEECCBSEEETT
T ss_pred ceeEEEEEeccCCCCC------ccccccchhhHhHHhhhcCCCccccccceeeeccccccccCCcEEEEEEEeccEEecC
Confidence 4789999999995210 0112379999999999999998888999999999999999999999999999999999
Q ss_pred CEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCc--CCCccCceeeecCC
Q 006068 293 DKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGM--TKPSIGHTVANTEV 355 (662)
Q Consensus 293 d~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl--~~~~~GdTl~~~~~ 355 (662)
|.|.+.+.+. ....+|++|..+. .++++|.|||+|++ .|+ +++.+||+|++++.
T Consensus 525 D~V~I~ps~~-----~~~~kVksI~~~~----~~v~eA~AGd~Vgl~L~GI~~~dI~RGdVL~~~~~ 582 (1289)
T 3avx_A 525 EEVEIVGIKE-----TQKSTCTGVEMFR----KLLDEGRAGENVGVLLRGIKREEIERGQVLAKPGT 582 (1289)
T ss_dssp CEEEEESSSS-----CEEEEEEEEECSS----CEESEEETTCEEEEEESSCCGGGCCTTCEEESTTS
T ss_pred CEEEEecCCC-----ceeEEEEEEeecC----ceeeEEecCCcceeEeeecchhcCCcccEEecCCC
Confidence 9999987531 1467899997653 58999999999877 466 57899999998764
No 25
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=100.00 E-value=1.2e-36 Score=328.07 Aligned_cols=238 Identities=17% Similarity=0.176 Sum_probs=204.0
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
||+++||+|||||||+++|+ ++|+|++.....+.+++++++|||||||.+|...+.++++
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~--------------------~~giTi~~~~~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~ 82 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG--------------------KKGTSSDITMYNNDKEGRNMVFVDAHSYPKTLKSLITALN 82 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS--------------------EEEEESSSEEEEECSSSSEEEEEECTTTTTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH--------------------hCCEEEEeeEEEEecCCeEEEEEECCChHHHHHHHHHHHH
Confidence 99999999999999999997 5699999999999999999999999999999999999999
Q ss_pred hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEec-cCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEE-
Q 006068 142 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLN-KVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLY- 218 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviN-KiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~- 218 (662)
.+|++||||| .+|+++||++++..+...++|. |+++| |+|+ + .....++.+++.+++...+.. .+|+++
T Consensus 83 ~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~--~~~~~~~~~~i~~~l~~~~~~----~~~ii~~ 154 (370)
T 2elf_A 83 ISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-H--MHAIDELKAKLKVITSGTVLQ----DWECISL 154 (370)
T ss_dssp TCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-C--HHHHHHHHHHHHHHTTTSTTT----TCEEEEC
T ss_pred HCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-C--HHHHHHHHHHHHHHHHhcCCC----ceEEEec
Confidence 9999999999 9999999999999999999998 99999 9998 3 344455667777777655432 478999
Q ss_pred -ccccc---CccCCccCCCCCCCccchHHHHHHHHhhCCCCCC---C-CCCCceeEEEeeeeecccceEEEEEEeeceec
Q 006068 219 -ASAKE---GWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA---S-LDAPFQMLVTMMEKDFYLGRILTGRVSSGVVS 290 (662)
Q Consensus 219 -~SA~~---g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~---~-~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~ 290 (662)
+||++ |. |+++|++.|.+++|+|.. . ...|++++|..++..++.|++++|||++|+|+
T Consensus 155 ~~SA~~~~~g~--------------gi~~L~~~l~~~~~~~~~~~~~~~~~p~r~~v~~vf~~~~~G~v~~g~v~~G~l~ 220 (370)
T 2elf_A 155 NTNKSAKNPFE--------------GVDELKARINEVAEKIEAENAELNSLPARIFIDHAFNVTGKGCVVLGVVKQGISK 220 (370)
T ss_dssp CCCTTSSSTTT--------------THHHHHHHHHHHHHHHHHHHHHGGGSCCEEEEEEEECCC---CEEEEEEEESEEE
T ss_pred ccccccCcCCC--------------CHHHHHHHHHhhccccccCCcccccccccccceeEEEcCCCceEEEEEEECCEEe
Confidence 99999 76 999999999999876521 1 23457777999999999999999999999999
Q ss_pred cCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEc--C--cCCCccCceeee
Q 006068 291 VGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA--G--MTKPSIGHTVAN 352 (662)
Q Consensus 291 ~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~--g--l~~~~~GdTl~~ 352 (662)
+||.|.+.+.+ ...+|++|+.+. .++++|.|||+|++. | .+++.+||+||+
T Consensus 221 ~gd~v~~~p~~-------~~~~V~~i~~~~----~~v~~a~aGd~v~i~l~gv~~~~i~~Gdvl~~ 275 (370)
T 2elf_A 221 DKDKTKIFPLD-------RDIEIRSIQSHD----VDIDSAPAGTRVGMRLKNVQAKDIERGFIISD 275 (370)
T ss_dssp TTCEEEEETTT-------EEEEEEEEEETT----EEESEEETTCEEEEEEESCCGGGCCTTCEEES
T ss_pred eCCEEEECCCC-------cEEEEeEEEECC----CCccEEcCCCcceEEEeccCHHHcCCceEEEC
Confidence 99999998743 678999997653 689999999999886 4 468999999997
No 26
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=100.00 E-value=6.7e-37 Score=347.88 Aligned_cols=302 Identities=22% Similarity=0.252 Sum_probs=229.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec------------------Cee
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR------------------ENE 120 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~------------------~~~ 120 (662)
+.++|+|+||+|||||||+++|++.... +. ..+|+|.......+.+. ...
T Consensus 4 r~~~V~IvGh~d~GKTTLl~~L~~~~v~--------~~----e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 71 (594)
T 1g7s_A 4 RSPIVSVLGHVDHGKTTLLDHIRGSAVA--------SR----EAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPG 71 (594)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHS--------CC--------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCE
T ss_pred CCcEEEEECCCCCcHHHHHHHHhcccCc--------cc----cCCceecccCeEEEeechhhhhccccccccccccccCC
Confidence 3569999999999999999999976321 11 11355555444444332 225
Q ss_pred EEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC-CCH-----------
Q 006068 121 LNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA-VSE----------- 188 (662)
Q Consensus 121 iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~-~~~----------- 188 (662)
++|||||||.+|..++.++++.+|++|||+|+.+|+++||.+.|..+...++|+|+|+||+|+.. +..
T Consensus 72 i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa 151 (594)
T 1g7s_A 72 LFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMETFS 151 (594)
T ss_dssp EEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHHHT
T ss_pred EEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999964 211
Q ss_pred -------HHHHHHHHHHHHHHHhcCCCCc--------CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 189 -------ERCDEVESLVFDLFANLGATDE--------QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 189 -------~~~~ei~~~v~~l~~~~g~~~~--------~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
..+.+...++.+.+...++..+ ...+|++++||++|. |+++|+++|..++|
T Consensus 152 ~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~--------------GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 152 KQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGE--------------GIPELLTMLMGLAQ 217 (594)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCC--------------CchhHHHHHHhhcc
Confidence 1122223334444444444321 235799999999999 99999999998776
Q ss_pred CCC-----CCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeec--------
Q 006068 254 PPK-----ASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKK-------- 320 (662)
Q Consensus 254 ~p~-----~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~-------- 320 (662)
.|. .++++|+.++|+++..+++.|+++++||++|+|++||.|.+.+.+ .....||.+|+.+.
T Consensus 218 ~~~~~~l~~~~~~p~~~~V~~~~~d~g~G~v~~~rV~~G~Lk~Gd~v~~~~~~-----~~~~~rV~~i~~~~~~~elr~~ 292 (594)
T 1g7s_A 218 QYLREQLKIEEDSPARGTILEVKEETGLGMTIDAVIYDGILRKDDTIAMMTSK-----DVISTRIRSLLKPRPLEEMRES 292 (594)
T ss_dssp HHCSGGGEECTTSBCEEEEEEEEEETTEEEEEEEEEEESEEETTCEEEEEBSS-----SEEEEECCEEEEECCCC----C
T ss_pred ccchhhhccccCCCceeEEEEEEEeCCcEEEEEEEEeeCEEeeCCEEEECCCC-----CceeEEEeEEEeccccchhhhc
Confidence 432 356899999999999999999999999999999999999998643 12356999999873
Q ss_pred CCceeeecccC--CCCEEEEcCcCCCccCceeeecCCCC--------CCCCCcCCCCeeeeeeeecCCCCCCCCCcccch
Q 006068 321 GTGMVLIDSAG--AGDIISVAGMTKPSIGHTVANTEVTT--------ALPTIELDPPTISMTFGVNDSPLAGRDGTHLTG 390 (662)
Q Consensus 321 g~~~~~v~~a~--AGdIvai~gl~~~~~GdTl~~~~~~~--------~l~~~~~~~P~~~~~~~~~~sp~~~~~~~~~~~ 390 (662)
+.+..++++|. +|++|++.||+++.+||||+..+++. .+..+.++.+.+.+.+++... .+.
T Consensus 293 ~~~~~~v~ea~~~aG~~v~~~~l~~~~~Gd~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vkad~~---------gs~ 363 (594)
T 1g7s_A 293 RKKFQKVDEVVAAAGIKIVAPGIDDVMAGSPLRVVTDPEKVREEILSEIEDIKIDTDEAGVVVKADTL---------GSL 363 (594)
T ss_dssp CCSEEECSEEESSEEEEEECSSCTTBCTTCEEEECSSHHHHHHHHHHHHHTTSCBCSSSCCEEEESSH---------HHH
T ss_pred cCCceEccEEcCCCCcEEEEcccCCCCCCCEEEecCCHHHHHHHHHHHHHhcccccccccEEEEeCCC---------CCH
Confidence 56678899988 99999999999999999999876531 122223344555666665443 566
Q ss_pred hhHHhHhhhh
Q 006068 391 GKIGARLMSE 400 (662)
Q Consensus 391 ~kl~~~L~k~ 400 (662)
+.|.+.|.++
T Consensus 364 eal~~~l~~~ 373 (594)
T 1g7s_A 364 EAVVKILRDM 373 (594)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 8888888876
No 27
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=100.00 E-value=8.7e-36 Score=326.46 Aligned_cols=265 Identities=27% Similarity=0.334 Sum_probs=210.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--------------------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-------------------- 117 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-------------------- 117 (662)
+..+||+++||+|||||||+++|++. ..|....|+++|+|+...+..+.+.
T Consensus 8 ~~~~~I~iiG~~~~GKSTLi~~L~g~---------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~ 78 (410)
T 1kk1_A 8 QAEVNIGMVGHVDHGKTTLTKALTGV---------WTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHE 78 (410)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHTC---------CCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCB
T ss_pred CCccEEEEECCCCCCHHHHHHHHhCC---------ccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcc
Confidence 45689999999999999999999843 2467788999999998877666552
Q ss_pred ---CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCc-hhhHHHHHHHHHHcCC-CcEEEeccCCCCCCCHHHHH
Q 006068 118 ---ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGL-RPILLLNKVDRPAVSEERCD 192 (662)
Q Consensus 118 ---~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~~~l-p~IvviNKiD~~~~~~~~~~ 192 (662)
...++|||||||.+|...+.+.+..+|++||||||.+|. ++||.+++..+..+++ |+|+|+||+|+.+ .....
T Consensus 79 ~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~--~~~~~ 156 (410)
T 1kk1_A 79 TEFVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVD--KEKAL 156 (410)
T ss_dssp CEEEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC--HHHHH
T ss_pred cccccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCC--HHHHH
Confidence 178999999999999999999999999999999999997 9999999999988887 5678899999954 33334
Q ss_pred HHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeee-
Q 006068 193 EVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMME- 271 (662)
Q Consensus 193 ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~- 271 (662)
+..+++.+++..... ..+|++++||++|. |+++|+++|.+++|.|..+.+.|++++|...+
T Consensus 157 ~~~~~i~~~l~~~~~----~~~~~i~vSA~~g~--------------gi~~L~~~l~~~~~~p~~~~~~~~~~~v~~~f~ 218 (410)
T 1kk1_A 157 ENYRQIKEFIEGTVA----ENAPIIPISALHGA--------------NIDVLVKAIEDFIPTPKRDPNKPPKMLVLRSFD 218 (410)
T ss_dssp HHHHHHHHHHTTSTT----TTCCEEECBTTTTB--------------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEC
T ss_pred HHHHHHHHHHHhcCc----CCCeEEEeeCCCCC--------------CHHHHHHHHHHhCCCCccccCCCcEEEEEEEEe
Confidence 455666666654322 14789999999998 99999999999999998888999999998765
Q ss_pred -------eecccceEEEEEEeeceeccCCEEEEeeccC---CCCcc--eEEeEEEeEEeecCCceeeecccCCCCEEEEc
Q 006068 272 -------KDFYLGRILTGRVSSGVVSVGDKVHGLRITD---SGTEK--IEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (662)
Q Consensus 272 -------~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~---~~~~~--~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~ 339 (662)
++++.|++++|||++|+|++||.|.+.+... .+... ....+|.+|+.. ..++++|.|||+|++.
T Consensus 219 v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~g~~~~~~~~~~v~~i~~~----~~~v~~a~aG~~v~~~ 294 (410)
T 1kk1_A 219 VNKPGTPPEKLVGGVLDGSIVQGKLKVGDEIEIRPGVPYEEHGRIKYEPITTEIVSLQAG----GQFVEEAYPGGLVGVG 294 (410)
T ss_dssp CSCCC----CCCCCEEEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEE
T ss_pred ccCCCccccCCceEEEEEEEEeCeEeeCCEEEECCCCccccccccccccceeEEEEEEEC----CeEecEEcCCCEEEEE
Confidence 4567899999999999999999999986420 00000 024678888753 3689999999998874
Q ss_pred -C----c--CCCccCceeeecCC
Q 006068 340 -G----M--TKPSIGHTVANTEV 355 (662)
Q Consensus 340 -g----l--~~~~~GdTl~~~~~ 355 (662)
+ + .++..||+||+++.
T Consensus 295 ~~~~~~~~~~d~~~G~vl~~~~~ 317 (410)
T 1kk1_A 295 TKLDPYLTKGDLMAGNVVGKPGK 317 (410)
T ss_dssp ESSCGGGTGGGTTTTCEEECTTC
T ss_pred EecCcccchhhccceeEEecCCC
Confidence 2 2 36778999998764
No 28
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=100.00 E-value=5.2e-35 Score=320.10 Aligned_cols=265 Identities=27% Similarity=0.327 Sum_probs=199.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--------------------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-------------------- 117 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-------------------- 117 (662)
+..+||+++||+|||||||+++|++. ..|....|+++|+|+...+..+.+.
T Consensus 6 ~~~~~I~iiG~~d~GKSTLi~~L~g~---------~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~ 76 (408)
T 1s0u_A 6 QAEVNIGMVGHVDHGKTSLTKALTGV---------WTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAE 76 (408)
T ss_dssp CCCEEEEEESCTTSSHHHHHHHHHSC---------CCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCB
T ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC---------ccccCcccccCCcEEEecccccccccccccccccccccccccCcc
Confidence 45789999999999999999999843 2356778889999998776554431
Q ss_pred ---CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCc-hhhHHHHHHHHHHcCC-CcEEEeccCCCCCCCHHHHH
Q 006068 118 ---ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGL-RPILLLNKVDRPAVSEERCD 192 (662)
Q Consensus 118 ---~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~~~l-p~IvviNKiD~~~~~~~~~~ 192 (662)
...++|||||||.+|...+.+.+..+|++|||+|+.+|. ++||.+++..+...++ |+|+|+||+|+.+.+. ..
T Consensus 77 ~~~~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~~--~~ 154 (408)
T 1s0u_A 77 TEFLRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQ--AE 154 (408)
T ss_dssp CEEEEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTTT--TT
T ss_pred cccccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHHH--HH
Confidence 168999999999999999999999999999999999997 9999999999888887 5789999999975432 12
Q ss_pred HHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeee-
Q 006068 193 EVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMME- 271 (662)
Q Consensus 193 ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~- 271 (662)
+..+++.+++..... ..+|++++||++|. |+++|+++|.+++|.|..+.+.||+++|.+++
T Consensus 155 ~~~~~i~~~l~~~~~----~~~~~i~vSA~~g~--------------gi~~L~~~l~~~i~~~~~~~~~~~~~~v~~~f~ 216 (408)
T 1s0u_A 155 ENYEQIKEFVKGTIA----ENAPIIPISAHHEA--------------NIDVLLKAIQDFIPTPKRDPDATPRMYVARSFD 216 (408)
T ss_dssp THHHHHHHHHTTSTT----TTCCEEEC--------------------CHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEEC
T ss_pred HHHHHHHHHHhhcCC----CCCeEEEeeCCCCC--------------CHHHHHHHHHHhCCCCcccCCCCeEEEEEEEEe
Confidence 234455555554322 14789999999998 99999999999999998888999999998765
Q ss_pred -------eecccceEEEEEEeeceeccCCEEEEeeccC---CCCcc--eEEeEEEeEEeecCCceeeecccCCCCEEEEc
Q 006068 272 -------KDFYLGRILTGRVSSGVVSVGDKVHGLRITD---SGTEK--IEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA 339 (662)
Q Consensus 272 -------~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~---~~~~~--~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~ 339 (662)
++++.|.++.|+|.+|+|++||.|.+.+... .+... ....+|++|+..+ .++++|.|||+|++.
T Consensus 217 v~~~g~~~~~~~G~v~~g~v~~G~l~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~~----~~~~~a~~G~~v~~~ 292 (408)
T 1s0u_A 217 INKPGTEIKDLKGGVLGGAIIQGVFKVGDEIEIRPGIKVTEGNKTFWKPLTTKIVSLAAGN----TILRKAHPGGLIGVG 292 (408)
T ss_dssp CCCSSCCGGGCCCCEEEEEEEESCEETTCEEEEEEEEEECCTTCCEEEEEEEECCEEEETT----EEESEECSSSCEEEE
T ss_pred ecCCCcccccCceeEEEEEEEECeEecCCEEEEcCCcccccccccccccceeEEEEEEECC----EEcCEEeCCCeEEEE
Confidence 3456899999999999999999999986420 00000 1256888988643 689999999999984
Q ss_pred C-----c--CCCccCceeeecCC
Q 006068 340 G-----M--TKPSIGHTVANTEV 355 (662)
Q Consensus 340 g-----l--~~~~~GdTl~~~~~ 355 (662)
. + +++..||+||+++.
T Consensus 293 ~~~~~~~~~~~~~~G~vl~~~~~ 315 (408)
T 1s0u_A 293 TTLDPYLTKSDALTGSVVGLPGT 315 (408)
T ss_dssp CSSCGGGTGGGTTTTCEEESTTC
T ss_pred eccCcccchhhccceeEEECCCC
Confidence 2 2 36788999998764
No 29
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=100.00 E-value=9e-36 Score=332.22 Aligned_cols=256 Identities=27% Similarity=0.385 Sum_probs=207.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..||+++||+|||||||+++|+... ....+|....|+++|+|++..+..+.++++.++|||||||.+|...+.++
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~-----~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh~~~~~~~~~~ 93 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIA-----STSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSA 93 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC-------------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHHHHCCC-----cccccccccccccCccEEecceEEEEECCEEEEEEECCChHHHHHHHHHH
Confidence 5799999999999999999998652 13457888899999999999999999999999999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhc-CCCCcCCCccEEE
Q 006068 140 VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL-GATDEQLDFPVLY 218 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~-g~~~~~~~~Pvi~ 218 (662)
++.+|++|||||+.+|+++||.+++..+...++|.|+|+||+|+.+ .+.++++.+++.+++... ++. ++|+++
T Consensus 94 ~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~--~~~~~~~~~~l~~~l~~~~~~~----~~~ii~ 167 (482)
T 1wb1_A 94 ADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAG--TEEIKRTEMIMKSILQSTHNLK----NSSIIP 167 (482)
T ss_dssp TTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSC--HHHHHHHHHHHHHHHHHSSSGG----GCCEEE
T ss_pred HhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCccc--chhHHHHHHHHHHHHhhhcccc----cceEEE
Confidence 9999999999999999999999999999999999999999999953 555666777787777665 442 468999
Q ss_pred cccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC--CCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEE
Q 006068 219 ASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP--KASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVH 296 (662)
Q Consensus 219 ~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p--~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~ 296 (662)
+||++|. |+++|+++|.+.+|.| ..+.++||++.|..++..++.|+++.|+|.+|+|++||.|.
T Consensus 168 vSA~~g~--------------gI~~L~~~L~~~i~~~~~~~~~~~~~~~~v~~v~~~~g~G~v~~g~v~~G~l~~gd~v~ 233 (482)
T 1wb1_A 168 ISAKTGF--------------GVDELKNLIITTLNNAEIIRNTESYFKMPLDHAFPIKGAGTVVTGTINKGIVKVGDELK 233 (482)
T ss_dssp CCTTTCT--------------THHHHHHHHHHHHHHSCCCCCSSSCCBCBCSCEECCSSCCCEECCCCCBSCCCSSEEEC
T ss_pred EECcCCC--------------CHHHHHHHHHHhhcCccccccccccccccceeEEEecCCceEEEEEEEEeEEeeCCEEE
Confidence 9999998 9999999999988766 66778899999999999999999999999999999999999
Q ss_pred EeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC--CCccCceee
Q 006068 297 GLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT--KPSIGHTVA 351 (662)
Q Consensus 297 ~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~--~~~~GdTl~ 351 (662)
+.+.+ ...+|++|..+. .++++|.|||.|++ .|++ ++..||+|+
T Consensus 234 ~~p~~-------~~~~V~~i~~~~----~~v~~a~~G~~v~~~l~~~~~~~i~~Gdvl~ 281 (482)
T 1wb1_A 234 VLPIN-------MSTKVRSIQYFK----ESVMEAKAGDRVGMAIQGVDAKQIYRGXILT 281 (482)
T ss_dssp CTTTC-------CCEEECCBCGGG----SCBCCCCSSCCCCEECSSCCSSCCCSSCBCC
T ss_pred ECCCC-------cEEEEeEEEECC----eEeeEecCCCEEEEEecCCCHhhccccceEe
Confidence 97643 346888887653 57899999999877 4764 688999994
No 30
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=100.00 E-value=1.2e-33 Score=308.84 Aligned_cols=274 Identities=20% Similarity=0.235 Sum_probs=208.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCC---ccccccccccccccceeEeeeEEEEE-----ecCeeEEEEeCCCC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---HERAMDSISLERERGITIASKVTGIS-----WRENELNMVDTPGH 129 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---~~~v~D~~~~E~ergiTi~~~~~~~~-----~~~~~iniIDTPGh 129 (662)
++..+|+++||+|||||||+++|+........ ..+..........++++.......+. ....+++|||||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh 85 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGH 85 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCc
Confidence 44679999999999999999999875322110 11111112223334444433221111 12378999999999
Q ss_pred ccchHHHHHHHhhcceEEEEeeCCCCc-hhhHHHHHHHHHHcCC-CcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006068 130 ADFGGEVERVVGMVEGAILVVDAGEGP-LAQTKFVLAKALKYGL-RPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (662)
Q Consensus 130 ~dF~~ev~~~l~~aD~aIlVVDa~~G~-~~qt~~~l~~~~~~~l-p~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~ 207 (662)
.+|...+..+++.+|++|+|+|+.++. ++||.+++..+...+. |+|+|+||+|+.+ .....+..+++.+++...+.
T Consensus 86 ~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~--~~~~~~~~~~i~~~l~~~~~ 163 (403)
T 3sjy_A 86 EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVS--KEEALSQYRQIKQFTKGTWA 163 (403)
T ss_dssp GGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSC--HHHHHHHHHHHHHHHTTSTT
T ss_pred HHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccc--hHHHHHHHHHHHHHHHhhCC
Confidence 999999999999999999999999997 9999999999998887 6789999999954 44445566667666655443
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEeeee--------ecccceE
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTMMEK--------DFYLGRI 279 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~--------~~~~G~i 279 (662)
. .+|++++||++|. |+++|+++|.+++|.|..+.+.||+++|.+.+. +++.|.+
T Consensus 164 ~----~~~ii~vSA~~g~--------------gi~~L~~~l~~~l~~~~~~~~~~~~~~v~~~~~v~~~~~~~~~~~G~v 225 (403)
T 3sjy_A 164 E----NVPIIPVSALHKI--------------NIDSLIEGIEEYIKTPYRDLSQKPVMLVIRSFDVNKPGTQFNELKGGV 225 (403)
T ss_dssp T----TCCEEECBTTTTB--------------SHHHHHHHHHHHSCCCCCCTTSCCEEEEEEEECCCCTTCCSSSCCCCE
T ss_pred C----CCEEEEEECCCCc--------------ChHHHHHHHHHhCCCCCCCCCCCcEEEEEEEEeecCCCcccccCcCcE
Confidence 2 4789999999998 999999999999999988889999999987653 5568999
Q ss_pred EEEEEeeceeccCCEEEEeeccC---CCCcc--eEEeEEEeEEeecCCceeeecccCCCCEEEEc-----Cc--CCCccC
Q 006068 280 LTGRVSSGVVSVGDKVHGLRITD---SGTEK--IEEGKVTKLMKKKGTGMVLIDSAGAGDIISVA-----GM--TKPSIG 347 (662)
Q Consensus 280 ~~gRV~sG~l~~Gd~V~~~~~~~---~~~~~--~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~-----gl--~~~~~G 347 (662)
++|+|.+|++++||.|.+.+... .+... ....+|++|+.+ +.++++|.|||+|++. ++ .++..|
T Consensus 226 ~~g~v~~G~~~~gd~v~~~p~~~~~~~~~~~~~~~~~~v~~i~~~----~~~~~~a~~G~~v~~~l~~~~~~~~~d~~~G 301 (403)
T 3sjy_A 226 IGGSIIQGLFKVDQEIKVLPGLRVEKQGKVSYEPIFTKISSIRFG----DEEFKEAKPGGLVAIGTYLDPSLTKADNLLG 301 (403)
T ss_dssp EEEEEEESCEETTCEEEEEEEEEEEETTEEEEEEEEEEEEEEEET----TEEESEECSSSCEEEEESSCHHHHGGGTTTT
T ss_pred EEEEEEeCEEecCCEEEEeCCcccccccccccccccEEEEEEEEC----CEEcCEEeCCCEEEEEeccccccchhhhccc
Confidence 99999999999999999976421 00000 014689999874 3699999999999983 22 378899
Q ss_pred ceeeecCC
Q 006068 348 HTVANTEV 355 (662)
Q Consensus 348 dTl~~~~~ 355 (662)
|+||+++.
T Consensus 302 ~vl~~~~~ 309 (403)
T 3sjy_A 302 SIITLADA 309 (403)
T ss_dssp CEEEETTC
T ss_pred cEEeCCCC
Confidence 99999865
No 31
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=100.00 E-value=1.6e-35 Score=328.96 Aligned_cols=252 Identities=26% Similarity=0.310 Sum_probs=207.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+.++|+++||+|||||||+++|+... ......+|+|++.....+.+++..++|||||||.+|...+.+
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~------------v~~~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~~~~~ 70 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTK------------VASGEAGGITQHIGAYHVETENGMITFLDTPGHAAFTSMRAR 70 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHH------------HSBTTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTTSBCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCC------------CccccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHHHHHH
Confidence 46799999999999999999998762 122334789988888888888999999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC--CCccE
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ--LDFPV 216 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~--~~~Pv 216 (662)
+++.+|++|||||+.+|+++||.++|..+...++|+|+++||+|++++++++ +.++ +...+...+. .++|+
T Consensus 71 ~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~---v~~~----l~~~~~~~~~~~~~~~~ 143 (501)
T 1zo1_I 71 GAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDR---VKNE----LSQYGILPEEWGGESQF 143 (501)
T ss_dssp SSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCC---TTCC----CCCCCCCTTCCSSSCEE
T ss_pred HHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHH---HHHH----HHHhhhhHHHhCCCccE
Confidence 9999999999999999999999999999999999999999999998765432 1111 1111211111 14799
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhC--CCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCE
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV--PPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDK 294 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l--P~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~ 294 (662)
+++||++|. |+++|+++|.... +.+...++.|+.++|++++.+++.|++++++|++|+|++||.
T Consensus 144 v~vSAktG~--------------gI~eLle~I~~~~~~~~~~~~~~~~~~~~V~e~~~d~g~G~v~~~~V~~Gtlk~Gd~ 209 (501)
T 1zo1_I 144 VHVSAKAGT--------------GIDELLDAILLQAEVLELKAVRKGMASGAVIESFLDKGRGPVATVLVREGTLHKGDI 209 (501)
T ss_dssp EECCTTTCT--------------TCTTHHHHTTTTCCCSTTTSCCCSBCEEEEEEEEECSSSSEEEEEEEEESBCCTTCE
T ss_pred EEEeeeecc--------------CcchhhhhhhhhhhhhccccccccccccceEEEEEeCCcEEEEEEEEEeeEEecCCE
Confidence 999999999 9999999998653 444556788999999999999999999999999999999999
Q ss_pred EEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCC-ccCceeeecCC
Q 006068 295 VHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEV 355 (662)
Q Consensus 295 V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~~~~ 355 (662)
|.+.+ ...+|..|+..+| .++++|.||+.+.+.|++++ ..||+++...+
T Consensus 210 v~~g~---------~~~kVr~i~~~~g---~~v~~a~~g~~V~i~gl~~~~~~Gd~~~~~~~ 259 (501)
T 1zo1_I 210 VLCGF---------EYGRVRAMRNELG---QEVLEAGPSIPVEILGLSGVPAAGDEVTVVRD 259 (501)
T ss_dssp EEEEB---------SSCEEEEECCTTT---TSEEEECCSSCSSSEEECSCCCTTEEEEEECS
T ss_pred EEEcc---------ceeEEEEEEecCC---CcCcEeccCCcEEEeCCCCCCCCCCEEEecCC
Confidence 98753 2347888876655 46899999999999999884 78999986544
No 32
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=100.00 E-value=2.2e-35 Score=330.55 Aligned_cols=255 Identities=26% Similarity=0.307 Sum_probs=209.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCccchHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~dF~~ev~ 137 (662)
+.++|+|+||+|||||||+++|+... ......+|+|.+.....+.+ ++..++|||||||.+|...+.
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~------------~~~~~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~~~~ 70 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ------------VAAMEAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSAMRA 70 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH------------HHHSSSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTTSBB
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC------------cccccCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHHHHH
Confidence 35689999999999999999999862 23334568888877777776 567999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEE
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVL 217 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi 217 (662)
++++.+|++|||+|+.+|+++||.++|..+...++|+|+|+||+|+++++... +.+++..+ .+.......++|++
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~---v~~~l~~~--~~~~e~~~~~~~iv 145 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEK---VKKELLAY--DVVCEDYGGDVQAV 145 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCS---SSSHHHHT--TSCCCCSSSSEEEC
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHH---HHHHHHhh--hhhHHhcCCCceEE
Confidence 99999999999999999999999999999999999999999999997665432 12222111 11111112357899
Q ss_pred EcccccCccCCccCCCCCCCccchHHHHHHHHhhCC--CCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEE
Q 006068 218 YASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP--PPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKV 295 (662)
Q Consensus 218 ~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP--~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V 295 (662)
++||++|. |+++|+++|...++ .+..+++.|+.+.|++++.+++.|++++|+|.+|+|++||.|
T Consensus 146 ~vSAktG~--------------GI~eLle~I~~l~~~~~~~~~~~~~~~~~V~e~~~~~g~G~V~~g~V~~G~l~~Gd~v 211 (537)
T 3izy_P 146 HVSALTGE--------------NMMALAEATIALAEMLELKADPTGAVEGTVIESFTDKGRGPVTTAIIQRGTLRKGSIL 211 (537)
T ss_dssp CCCSSSSC--------------SSHHHHHHHHHHHTTCCCCCCSSSSEEEEEEEECCCTTCCCCEEEEEEEECCSSEEEE
T ss_pred EEECCCCC--------------CchhHHHHHHHhhhcccccCCCCCCcceeEEEEEEeCCCceEEEEEEecCEEEcCCEE
Confidence 99999999 99999999987654 455567899999999999999999999999999999999988
Q ss_pred EEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEEcCcCCC-ccCceeeecCCC
Q 006068 296 HGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISVAGMTKP-SIGHTVANTEVT 356 (662)
Q Consensus 296 ~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai~gl~~~-~~GdTl~~~~~~ 356 (662)
.... ...+|++|+.++| .++++|.|||+|+|+|++++ ..||+|+..+++
T Consensus 212 ~~g~---------~~~kVr~i~~~~g---~~v~~A~~G~~V~i~g~~~~~~~Gd~l~~~~~~ 261 (537)
T 3izy_P 212 VAGK---------SWAKVRLMFDENG---RAVNEAYPSMPVGIIGWRDLPSAGDEILEVESE 261 (537)
T ss_dssp CCSS---------CCEEEEEEEECCC---CCSCCSCCSTTCCCCSSEEEEEEESSCCSCCSS
T ss_pred EeCC---------ceEEEEEEEcCCC---CCCcEEcCCCEEEEECCCCCCCCCCEEEecCCh
Confidence 4321 3468999988776 57999999999999999985 789999987654
No 33
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.85 E-value=9.9e-22 Score=214.65 Aligned_cols=185 Identities=22% Similarity=0.274 Sum_probs=132.8
Q ss_pred CCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCe-eEEEEeCCCCccc
Q 006068 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN-ELNMVDTPGHADF 132 (662)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~-~iniIDTPGh~dF 132 (662)
.......++|+|+|++|+|||||+++|+... ....+..+|+|++.....+.+.+. .++|||||||.+|
T Consensus 28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~-----------~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQN-----------VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDV 96 (423)
T ss_dssp C---CCCEEEEEECSCSTTTTTTTTSSCC------------------------CCCCEEEEEETTTEEEEEEECSSTTCC
T ss_pred cCCCCCCEEEEEECCCCCCHHHHHHHHHcCC-----------CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcc
Confidence 3344567899999999999999999998762 223456678999999999988876 9999999999988
Q ss_pred hH-------HHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006068 133 GG-------EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (662)
Q Consensus 133 ~~-------ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~ 205 (662)
.. .+..+++.+|++|+|+|+ +...++..++..+.+.++|+|+|+||+|+...+.. +..+ .+
T Consensus 97 ~~l~~~~~~~~~~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~---~~~~---~l---- 164 (423)
T 3qq5_A 97 GELGRLRVEKARRVFYRADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE---ELKG---LY---- 164 (423)
T ss_dssp CTTCCCCHHHHHHHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT---HHHH---HS----
T ss_pred cchhHHHHHHHHHHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH---HHHH---HH----
Confidence 53 256788899999999999 78899999999999999999999999999766542 1111 11
Q ss_pred CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCC-------CCCCceeEEEeeeeecccce
Q 006068 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS-------LDAPFQMLVTMMEKDFYLGR 278 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~-------~~~p~~~~V~~~~~~~~~G~ 278 (662)
.+...+|++++||++|. |++++++.|.+.++.+... ..+.+.++|..++.....|+
T Consensus 165 ---~~~~g~~v~~vSAktg~--------------gI~eL~~~L~~~l~~~~e~~l~~dLv~~gd~v~lv~pid~~~pkgr 227 (423)
T 3qq5_A 165 ---ESRYEAKVLLVSALQKK--------------GFDDIGKTISEILPGDEEIPYLGDLIDGGDLVILVVPIDLGAPKGR 227 (423)
T ss_dssp ---SCCTTCCCCCCSSCCTT--------------STTTHHHHHHHHSCCCCCCCSCSCCCCTTCCEEEECCCSCCSSTTC
T ss_pred ---HHHcCCCEEEEECCCCC--------------CHHHHHHHHHHhhhhhccCcchhhccccCceEEEEeeccccCcCCc
Confidence 12234689999999998 9999999999999765211 13445566655544443343
No 34
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.84 E-value=5.2e-21 Score=182.75 Aligned_cols=161 Identities=29% Similarity=0.387 Sum_probs=123.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+.++|+++|++|+|||||+++|+...... ....++|.......+.+++..++||||||+.+|.....+
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 74 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTE------------QEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTTMRAR 74 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSC------------SSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSCSCCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcccc------------CCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHHHHHH
Confidence 46799999999999999999998763221 122344444444566778899999999999999887777
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC--CccE
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL--DFPV 216 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~--~~Pv 216 (662)
++..+|++|+|+|+.++...++...+..+...++|+++|+||+|+...+.+. +. ..+...+...... .+++
T Consensus 75 ~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~ 147 (178)
T 2lkc_A 75 GAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEANPDR---VM----QELMEYNLVPEEWGGDTIF 147 (178)
T ss_dssp SCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSCHHH---HH----HHHTTTTCCBTTTTSSEEE
T ss_pred HHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCCHHH---HH----HHHHhcCcChhHcCCcccE
Confidence 8889999999999999988899888888888899999999999997654422 21 1222222211122 2689
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+++||++|. |+++|++.|.+.+
T Consensus 148 ~~~Sa~~~~--------------gv~~l~~~l~~~~ 169 (178)
T 2lkc_A 148 CKLSAKTKE--------------GLDHLLEMILLVS 169 (178)
T ss_dssp EECCSSSSH--------------HHHHHHHHHHHHH
T ss_pred EEEecCCCC--------------CHHHHHHHHHHhh
Confidence 999999998 9999999998654
No 35
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.83 E-value=1.2e-20 Score=187.67 Aligned_cols=174 Identities=18% Similarity=0.137 Sum_probs=124.6
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE-ecCeeEEEEeCCCCcc---
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS-WRENELNMVDTPGHAD--- 131 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~-~~~~~iniIDTPGh~d--- 131 (662)
...+.++|+|+|+.|+|||||+++|+..... .......|.|.......+. +++..++||||||+.+
T Consensus 25 ~~~~~~~i~v~G~~~~GKSslin~l~~~~~~----------~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~ 94 (223)
T 4dhe_A 25 PPTVQPEIAFAGRSNAGKSTAINVLCNQKRL----------AFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEV 94 (223)
T ss_dssp CCCCSCEEEEEESCHHHHHHHHHHHTTCSSS----------SCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCC
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHhCCCcc----------eeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccC
Confidence 3445789999999999999999999876311 1122334556665555555 5678999999999743
Q ss_pred -------chHHHHHHHhh---cceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHH
Q 006068 132 -------FGGEVERVVGM---VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (662)
Q Consensus 132 -------F~~ev~~~l~~---aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l 201 (662)
|...+..+++. +|++|+|+|+.++.......++..+...++|+++|+||+|+.. .....+..+++.+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~~ 172 (223)
T 4dhe_A 95 PGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLT--RQESINALRATQKS 172 (223)
T ss_dssp CSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSC--HHHHHHHHHHHHHH
T ss_pred ChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCC--hhhHHHHHHHHHHH
Confidence 34444555655 7889999999999888888888888889999999999999954 33333344444444
Q ss_pred HHhc---CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCC
Q 006068 202 FANL---GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKAS 258 (662)
Q Consensus 202 ~~~~---g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~ 258 (662)
+..+ +. ...+|++++||++|. |+++|++.|.+.++.+...
T Consensus 173 l~~~~~~~~---~~~~~~~~~SA~~g~--------------gv~~l~~~l~~~~~~~~~~ 215 (223)
T 4dhe_A 173 LDAYRDAGY---AGKLTVQLFSALKRT--------------GLDDAHALIESWLRPAAAD 215 (223)
T ss_dssp HHHHHHHTC---CSCEEEEEEBTTTTB--------------SHHHHHHHHHHHHC-----
T ss_pred HHhhhhccc---CCCCeEEEeecCCCc--------------CHHHHHHHHHHhcCccCCc
Confidence 3332 11 123689999999999 9999999999999876543
No 36
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.83 E-value=4.5e-20 Score=173.00 Aligned_cols=154 Identities=23% Similarity=0.301 Sum_probs=115.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------c
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD-------F 132 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d-------F 132 (662)
+++|+++|+.|+|||||+++|+.... ...+...++|.......+.+++..++||||||+.+ +
T Consensus 1 ~~ki~v~G~~~~GKSsli~~l~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 69 (161)
T 2dyk_A 1 MHKVVIVGRPNVGKSSLFNRLLKKRS-----------AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKI 69 (161)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHCCC----------------------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCe-----------eeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHH
Confidence 36899999999999999999997632 11233446666667777788889999999999987 4
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
...+..+++.+|++|+|+|+.++.......++..+...+.|+++|+||+|+.... +++.++. .+++
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--------~~~~~~~-~~~~----- 135 (161)
T 2dyk_A 70 QEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE--------LYLGPLY-GLGF----- 135 (161)
T ss_dssp HHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG--------GGCGGGG-GGSS-----
T ss_pred HHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch--------HhHHHHH-hCCC-----
Confidence 4566678899999999999999877777777777777899999999999985431 1111222 3332
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.+++++||++|. |++++++.|.+.+|
T Consensus 136 -~~~~~~Sa~~~~--------------gv~~l~~~l~~~l~ 161 (161)
T 2dyk_A 136 -GDPIPTSSEHAR--------------GLEELLEAIWERLP 161 (161)
T ss_dssp -CSCEECBTTTTB--------------SHHHHHHHHHHHCC
T ss_pred -CCeEEEecccCC--------------ChHHHHHHHHHhCc
Confidence 168999999998 99999999999886
No 37
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.82 E-value=2.5e-20 Score=205.46 Aligned_cols=163 Identities=25% Similarity=0.323 Sum_probs=120.7
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch----
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG---- 133 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~---- 133 (662)
+..++|+++|++|+|||||+++|++.. ....+...|+|.+.....+.+++..++||||||+.++.
T Consensus 173 ~~~~ki~lvG~~nvGKSSLin~l~~~~-----------~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 241 (436)
T 2hjg_A 173 EEVIQFCLIGRPNVGKSSLVNAMLGEE-----------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE 241 (436)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST-----------TEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCC
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCCC-----------ceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccc
Confidence 356899999999999999999999762 22344567899998888999999999999999985433
Q ss_pred ------HH-HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 134 ------GE-VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 134 ------~e-v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
.. ...+++.+|++|+|+|+.++...|+..++..+.+.+.|+|+|+||+|+...+.....++.+++.+.+....
T Consensus 242 ~~e~~~~~~~~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~ 321 (436)
T 2hjg_A 242 TTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD 321 (436)
T ss_dssp CCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCC
Confidence 22 23578899999999999999999999999999999999999999999976554334455555555444332
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
.+|++++||++|+ |+++|++.+.+.
T Consensus 322 ------~~~~~~~SA~tg~--------------~v~~l~~~i~~~ 346 (436)
T 2hjg_A 322 ------YAPILFMSALTKK--------------RIHTLMPAIIKA 346 (436)
T ss_dssp ------TSCEEECCTTTCT--------------TGGGHHHHHHHH
T ss_pred ------CCCEEEEecccCC--------------CHHHHHHHHHHH
Confidence 3589999999999 666666655543
No 38
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=9.4e-20 Score=191.69 Aligned_cols=163 Identities=18% Similarity=0.238 Sum_probs=126.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-CeeEEEEeCCCCccch----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-ENELNMVDTPGHADFG---- 133 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-~~~iniIDTPGh~dF~---- 133 (662)
..-.|+|+|++|+|||||+++|++.... ......+.|.......+.++ +.+++||||||+.++.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~-----------i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~ 77 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVS-----------IISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDV 77 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCS-----------CCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCcc-----------ccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchh
Confidence 3568999999999999999999976321 22334566666666677777 8999999999997654
Q ss_pred ------HHHHHHHhhcceEEEEeeCCCCchhhHHHH-HHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 134 ------GEVERVVGMVEGAILVVDAGEGPLAQTKFV-LAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 134 ------~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~-l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
..+..+++.+|++|+|+|+.++...++..+ +..+...++|+++|+||+|+.. +.....+..+++.+ .++
T Consensus 78 l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~-~~~~~~~~~~~l~~---~~~ 153 (308)
T 3iev_A 78 LGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIG-PAKNVLPLIDEIHK---KHP 153 (308)
T ss_dssp HHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSS-SGGGGHHHHHHHHH---HCT
T ss_pred HHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCC-CHHHHHHHHHHHHH---hcc
Confidence 677788999999999999999998888888 6777778999999999999962 22222333333322 222
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
. ..+++++||++|. |+++|++.|.+++|..
T Consensus 154 ~-----~~~i~~vSA~~g~--------------gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 154 E-----LTEIVPISALKGA--------------NLDELVKTILKYLPEG 183 (308)
T ss_dssp T-----CCCEEECBTTTTB--------------SHHHHHHHHHHHSCBC
T ss_pred C-----CCeEEEEeCCCCC--------------CHHHHHHHHHHhCccC
Confidence 1 2469999999998 9999999999999753
No 39
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.82 E-value=6.5e-20 Score=192.24 Aligned_cols=158 Identities=23% Similarity=0.244 Sum_probs=119.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d------- 131 (662)
+..+|+|+|++|+|||||+|+|++...... ....+.|.......+.+++.+++||||||+.+
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~iv-----------s~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~ 74 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPI-----------SPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGE 74 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCC-----------CSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeee-----------cCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHH
Confidence 356899999999999999999997643211 11223333333344567889999999999987
Q ss_pred -chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 132 -FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 132 -F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
|...+..+++.+|++|+|+|+.++...++..++..+.+. ++|+|+|+||+|+...+.. +.+.+..+ .+
T Consensus 75 ~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~~----~~~~~~~~---~~-- 145 (301)
T 1wf3_A 75 FMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPEE----AMKAYHEL---LP-- 145 (301)
T ss_dssp HHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHHH----HHHHHHHT---ST--
T ss_pred HHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchHH----HHHHHHHh---cC--
Confidence 677888899999999999999998888888888888777 8999999999999643220 22222221 11
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
..+++++||++|. |+++|++.|.+.+|.
T Consensus 146 ----~~~~~~iSA~~g~--------------gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 146 ----EAEPRMLSALDER--------------QVAELKADLLALMPE 173 (301)
T ss_dssp ----TSEEEECCTTCHH--------------HHHHHHHHHHTTCCB
T ss_pred ----cCcEEEEeCCCCC--------------CHHHHHHHHHHhccc
Confidence 1368999999998 999999999998864
No 40
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.81 E-value=7.3e-20 Score=177.38 Aligned_cols=168 Identities=18% Similarity=0.174 Sum_probs=112.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc-ccccccccccceeEeeeEE-EEEecCeeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-MDSISLERERGITIASKVT-GISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v-~D~~~~E~ergiTi~~~~~-~~~~~~~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|++|+|||||++.|... .......+. ..........|.+...... .+......++||||||+.+|...
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 45679999999999999999655543 211111100 0000111122222222211 23334578999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH---------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK---------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~---------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
...+++.+|++|+|+|+.++...++...+..+.. .++|+++|+||+|+.+... .+++.+++...+
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~~~~~~~ 164 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALP------VEMVRAVVDPEG 164 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCC------HHHHHHHHCTTC
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccC------HHHHHHHHHhcC
Confidence 9999999999999999997766666555544433 4789999999999965321 223334444433
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+ .+++++||++|. |++++++.|.+.+
T Consensus 165 ~------~~~~~~Sa~~~~--------------gv~~l~~~l~~~i 190 (198)
T 3t1o_A 165 K------FPVLEAVATEGK--------------GVFETLKEVSRLV 190 (198)
T ss_dssp C------SCEEECBGGGTB--------------THHHHHHHHHHHH
T ss_pred C------ceEEEEecCCCc--------------CHHHHHHHHHHHH
Confidence 2 279999999998 9999999988754
No 41
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.81 E-value=2.4e-19 Score=171.53 Aligned_cols=162 Identities=17% Similarity=0.163 Sum_probs=114.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+++|+.|+|||||+++|+......... ...+.+.......+......++||||||+.+|......
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 80 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKDQFVEFQE----------STIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPM 80 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCTTTSC----------CCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCcCC----------CCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHH
Confidence 45799999999999999999999763321111 11133333333333333568999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCch-hhHHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+++.+|++|+|+|+.+... .....++..+... ++|+++|+||+|+....... .+++.++....+ +
T Consensus 81 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~ 149 (181)
T 2efe_B 81 YYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDARKVT----AEDAQTYAQENG-------L 149 (181)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSC----HHHHHHHHHHTT-------C
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccccCC----HHHHHHHHHHcC-------C
Confidence 9999999999999987654 3334555555554 67899999999996433211 122333333333 4
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
|++++||++|. |+++++++|.+.++..
T Consensus 150 ~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~ 176 (181)
T 2efe_B 150 FFMETSAKTAT--------------NVKEIFYEIARRLPRV 176 (181)
T ss_dssp EEEECCSSSCT--------------THHHHHHHHHHTCC--
T ss_pred EEEEEECCCCC--------------CHHHHHHHHHHHHHhc
Confidence 79999999998 9999999999988654
No 42
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.81 E-value=4.2e-19 Score=171.77 Aligned_cols=164 Identities=20% Similarity=0.246 Sum_probs=120.2
Q ss_pred CCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCC-----
Q 006068 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG----- 128 (662)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPG----- 128 (662)
..+....++|+++|+.|+|||||+++|+..... ......+.|..... ...+.++.+|||||
T Consensus 17 ~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~-----------~~~~~~~~t~~~~~---~~~~~~~~i~Dt~G~~~~~ 82 (195)
T 3pqc_A 17 DYPPPLKGEVAFVGRSNVGKSSLLNALFNRKIA-----------FVSKTPGKTRSINF---YLVNSKYYFVDLPGYGYAK 82 (195)
T ss_dssp CCCCCTTCEEEEEEBTTSSHHHHHHHHHTSCCS-----------CCCSSCCCCCCEEE---EEETTTEEEEECCCBSSSC
T ss_pred hCCCCCCeEEEEECCCCCCHHHHHHHHHcCccc-----------cccCCCCCccCeEE---EEECCcEEEEECCCCcccc
Confidence 334456789999999999999999999976311 11122244433322 22356799999999
Q ss_pred -----CccchHHHHHHHhhc---ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHH
Q 006068 129 -----HADFGGEVERVVGMV---EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFD 200 (662)
Q Consensus 129 -----h~dF~~ev~~~l~~a---D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~ 200 (662)
+..|......+++.+ |++++|+|+..+.......++..+...++|+++|+||+|+.. ........+++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~--~~~~~~~~~~~~~ 160 (195)
T 3pqc_A 83 VSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVK--MSERAKKLEEHRK 160 (195)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC--GGGHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCC--hHHHHHHHHHHHH
Confidence 344555555566555 999999999998888888888888889999999999999954 2333445555666
Q ss_pred HHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 201 LFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 201 l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++...+ .++++++||++|. |+++++++|.+.++
T Consensus 161 ~~~~~~------~~~~~~~Sa~~~~--------------gv~~l~~~l~~~l~ 193 (195)
T 3pqc_A 161 VFSKYG------EYTIIPTSSVTGE--------------GISELLDLISTLLK 193 (195)
T ss_dssp HHHSSC------CSCEEECCTTTCT--------------THHHHHHHHHHHHC
T ss_pred HHhhcC------CCceEEEecCCCC--------------CHHHHHHHHHHHhh
Confidence 555433 2579999999998 99999999988765
No 43
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.80 E-value=4e-19 Score=172.51 Aligned_cols=163 Identities=18% Similarity=0.280 Sum_probs=114.3
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCC-------
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG------- 128 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPG------- 128 (662)
+..+..+|+++|++|+|||||+++|+...... ......|.|.......+ +.+++||||||
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~----------~~~~~~~~t~~~~~~~~---~~~~~l~Dt~G~~~~~~~ 85 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLINRKNLA----------RTSSKPGKTQTLNFYII---NDELHFVDVPGYGFAKVS 85 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHTC-----------------------CCEEEEEE---TTTEEEEECCCBCCCSSC
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhCCCCcc----------ccCCCCCceeeEEEEEE---CCcEEEEECCCCCccccC
Confidence 33457899999999999999999999763211 11122344444333322 34799999999
Q ss_pred ---CccchHHHHHHHhhc---ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 006068 129 ---HADFGGEVERVVGMV---EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLF 202 (662)
Q Consensus 129 ---h~dF~~ev~~~l~~a---D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~ 202 (662)
+..|...+..+++.+ |++++|+|+.++...+...+++.+...++|+++|+||+|+... .......+++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~ 163 (195)
T 1svi_A 86 KSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPK--GKWDKHAKVVRQTL 163 (195)
T ss_dssp HHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG--GGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCh--HHHHHHHHHHHHHH
Confidence 445555566677766 9999999999988888888888888899999999999999643 22333334444433
Q ss_pred HhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.. ...++++++||++|. |+++|++.|.+.++
T Consensus 164 ~~------~~~~~~~~~Sa~~~~--------------gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 164 NI------DPEDELILFSSETKK--------------GKDEAWGAIKKMIN 194 (195)
T ss_dssp TC------CTTSEEEECCTTTCT--------------THHHHHHHHHHHHT
T ss_pred cc------cCCCceEEEEccCCC--------------CHHHHHHHHHHHhc
Confidence 21 123679999999998 99999999987764
No 44
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.80 E-value=1.8e-19 Score=199.65 Aligned_cols=164 Identities=24% Similarity=0.322 Sum_probs=128.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCC---------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG--------- 128 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPG--------- 128 (662)
....+|+++|++|+|||||+++|+... ....+...|+|.+.....+.+++..++||||||
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~-----------~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~ 261 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEE-----------RVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYE 261 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTST-----------TEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCC
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCC-----------ccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccch
Confidence 457899999999999999999999652 233445568888888888899999999999999
Q ss_pred -CccchHHH-HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 129 -HADFGGEV-ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 129 -h~dF~~ev-~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
+..|.... ..+++.+|++|+|+|+.++...++..++..+.+.++|+|+|+||+|+...+....++..+.+.+.+...+
T Consensus 262 ~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 341 (456)
T 4dcu_A 262 TTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLD 341 (456)
T ss_dssp CCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGT
T ss_pred HHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCC
Confidence 45565443 3578899999999999999999999999999999999999999999976555455556666655544332
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.+|++++||++|. |+++|++.|.+.+
T Consensus 342 ------~~~~~~~SA~~g~--------------gv~~l~~~i~~~~ 367 (456)
T 4dcu_A 342 ------YAPILFMSALTKK--------------RIHTLMPAIIKAS 367 (456)
T ss_dssp ------TSCEEECCTTTCT--------------TGGGHHHHHHHHH
T ss_pred ------CCCEEEEcCCCCc--------------CHHHHHHHHHHHH
Confidence 2579999999999 8888888887655
No 45
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.80 E-value=3.8e-19 Score=169.46 Aligned_cols=160 Identities=19% Similarity=0.182 Sum_probs=114.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
++..+|+|+|+.|+|||||+++|+......... ...+.+.......+......++||||||+.+|.....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 82 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCP----------HTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTR 82 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCT----------TSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCC----------CccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHH
Confidence 456899999999999999999999874322111 1123344444444433457899999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+....... .+++.+++...+
T Consensus 83 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------- 151 (179)
T 1z0f_A 83 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVT----YEEAKQFAEENG------- 151 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-------
T ss_pred HHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC----HHHHHHHHHHcC-------
Confidence 999999999999999876443333 34444443 478899999999985322111 122333444333
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|. |+++++++|.+.+
T Consensus 152 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 176 (179)
T 1z0f_A 152 LLFLEASAKTGE--------------NVEDAFLEAAKKI 176 (179)
T ss_dssp CEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 479999999998 9999999998765
No 46
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.80 E-value=5e-19 Score=166.97 Aligned_cols=160 Identities=16% Similarity=0.143 Sum_probs=115.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|+.|+|||||+++|+....... .....+.+.......+...+..++||||||+.+|......+
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~ 75 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEF----------QESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMY 75 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTT----------CCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCC----------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHh
Confidence 46899999999999999999997632211 11223455444444444456789999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhh-HHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++.+|++|+|+|+.+....+ ...++..+... ++|+++|+||+|+....... .++...+....+ ++
T Consensus 76 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~~ 144 (170)
T 1r2q_A 76 YRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANKRAVD----FQEAQSYADDNS-------LL 144 (170)
T ss_dssp HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-------CE
T ss_pred ccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccccccC----HHHHHHHHHHcC-------Ce
Confidence 99999999999998764333 33455555543 67888999999985422111 112223333332 57
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++||++|. |+++++++|.+.++.
T Consensus 145 ~~~~Sa~~g~--------------gi~~l~~~i~~~~~~ 169 (170)
T 1r2q_A 145 FMETSAKTSM--------------NVNEIFMAIAKKLPK 169 (170)
T ss_dssp EEECCTTTCT--------------THHHHHHHHHHTSCC
T ss_pred EEEEeCCCCC--------------CHHHHHHHHHHHHhh
Confidence 9999999998 999999999988763
No 47
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=3.5e-19 Score=173.28 Aligned_cols=163 Identities=19% Similarity=0.191 Sum_probs=118.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
++..+|+|+|+.|+|||||+++|+....... .....|.+.......+......++||||||+.+|.....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 90 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHN----------ISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAP 90 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCCCCTT----------CCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTH
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCCCCCC----------cCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhH
Confidence 3467999999999999999999998743211 122335555555555555668999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+...+... .+++.+++...+
T Consensus 91 ~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v~----~~~~~~~~~~~~------- 159 (192)
T 2fg5_A 91 MYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVP----LKDAKEYAESIG------- 159 (192)
T ss_dssp HHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC----HHHHHHHHHTTT-------
T ss_pred HhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccccccC----HHHHHHHHHHcC-------
Confidence 99999999999999987654333 3445555543 78999999999985322111 122333444333
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
+|++++||++|. |++++++.|.+.++..
T Consensus 160 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~~ 187 (192)
T 2fg5_A 160 AIVVETSAKNAI--------------NIEELFQGISRQIPPL 187 (192)
T ss_dssp CEEEECBTTTTB--------------SHHHHHHHHHHTCC--
T ss_pred CEEEEEeCCCCc--------------CHHHHHHHHHHHHHhh
Confidence 579999999998 9999999999988654
No 48
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.80 E-value=2.8e-19 Score=174.01 Aligned_cols=161 Identities=16% Similarity=0.188 Sum_probs=114.6
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCC-CCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGAD-IPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
....++|+|+|+.|+|||||+++|+...... .. .. |+......+.+.+..++||||||+.+|...
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~----------~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 79 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHI----------TA----TVGYNVETFEKGRVAFTVFDMGGAKKFRGL 79 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCCC----CC----------CC----CSSEEEEEEEETTEEEEEEEECCSGGGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcCCCccccc----------cc----ccceeEEEEEeCCEEEEEEECCCCHhHHHH
Confidence 3456899999999999999999998763322 11 11 222333456788999999999999999988
Q ss_pred HHHHHhhcceEEEEeeCCCCch-hhHHHHHHHHHHc-----------CCCcEEEeccCCCCCCCHHHHHHHHHHHH-HHH
Q 006068 136 VERVVGMVEGAILVVDAGEGPL-AQTKFVLAKALKY-----------GLRPILLLNKVDRPAVSEERCDEVESLVF-DLF 202 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~~-----------~lp~IvviNKiD~~~~~~~~~~ei~~~v~-~l~ 202 (662)
...+++.+|++|+|+|+.++.. .....++..+... ++|+|+|+||+|+..... ..++.+.+. ..+
T Consensus 80 ~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~ 157 (199)
T 4bas_A 80 WETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT--AAELVEILDLTTL 157 (199)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC--HHHHHHHHTHHHH
T ss_pred HHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC--HHHHHHHhcchhh
Confidence 8889999999999999988653 3334555555544 899999999999965422 122222211 011
Q ss_pred HhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
. ....++++++||++|. |++++++.|.+.+.
T Consensus 158 ~------~~~~~~~~~~Sa~~g~--------------gv~~l~~~l~~~~~ 188 (199)
T 4bas_A 158 M------GDHPFVIFASNGLKGT--------------GVHEGFSWLQETAS 188 (199)
T ss_dssp H------TTSCEEEEECBTTTTB--------------THHHHHHHHHHHHH
T ss_pred c------cCCeeEEEEeeCCCcc--------------CHHHHHHHHHHHHH
Confidence 0 1124689999999998 99999999988764
No 49
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.79 E-value=2.1e-19 Score=188.40 Aligned_cols=160 Identities=24% Similarity=0.258 Sum_probs=118.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc-c------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA-D------ 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~-d------ 131 (662)
+..+|+|+||+|+|||||+++|++.... ......+.|.......+.+++.++++|||||+. .
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~-----------i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l~ 75 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKIS-----------ITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAIN 75 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEE-----------ECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCcc-----------ccCCCCCcceeeEEEEEEECCeeEEEEECcCCCccchhhHH
Confidence 3468999999999999999999976321 111122344333344467788999999999997 2
Q ss_pred --chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 132 --FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 132 --F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
|...+..+++.+|++++|+|+.+ +..++..+++.+...+.|.|+|+||+|+.. +... +.+.+.++...+++
T Consensus 76 ~~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~-~~~~---~~~~l~~l~~~~~~-- 148 (301)
T 1ega_A 76 RLMNKAASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ-EKAD---LLPHLQFLASQMNF-- 148 (301)
T ss_dssp HHHTCCTTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC-CHHH---HHHHHHHHHTTSCC--
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc-cHHH---HHHHHHHHHHhcCc--
Confidence 33444567788999999999988 888998888888777999999999999964 2222 22333333333332
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.+++++||++|. |+++|++.|.+.+|.
T Consensus 149 ----~~~i~iSA~~g~--------------~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 149 ----LDIVPISAETGL--------------NVDTIAAIVRKHLPE 175 (301)
T ss_dssp ----SEEEECCTTTTT--------------THHHHHHHHHTTCCB
T ss_pred ----CceEEEECCCCC--------------CHHHHHHHHHHhCCc
Confidence 158999999998 999999999998874
No 50
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.79 E-value=8.8e-19 Score=169.42 Aligned_cols=162 Identities=19% Similarity=0.161 Sum_probs=111.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|+.|+|||||+++|+..... ... -|+......+.+++..++||||||+.+|......
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~-----------~~~----~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 79 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVV-----------HTS----PTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNT 79 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCE-----------EEE----CCSCSSCEEEEETTEEEEEEECCC----CGGGHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCC-----------cCc----CCCccceEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 4579999999999999999999965221 111 1222334456678899999999999999988889
Q ss_pred HHhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+|++|+|+|+.+... .....++..+.. .+.|+++|+||+|+.+... ..++ .+.+....+ ....
T Consensus 80 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i----~~~~~~~~~--~~~~ 151 (187)
T 1zj6_A 80 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--VAEI----SQFLKLTSI--KDHQ 151 (187)
T ss_dssp HHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--HHHH----HHHHTGGGC--CSSC
T ss_pred HhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCCC--HHHH----HHHhChhhh--cCCC
Confidence 9999999999999987643 334445555544 4789999999999965322 1222 222211111 1224
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKA 257 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~ 257 (662)
++++++||++|. |+++++++|.+.++.+..
T Consensus 152 ~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 152 WHIQACCALTGE--------------GLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp EEEEECBTTTTB--------------THHHHHHHHHHHHCC---
T ss_pred cEEEEccCCCCc--------------CHHHHHHHHHHHHHHHhh
Confidence 689999999998 999999999998876544
No 51
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.79 E-value=6.8e-19 Score=170.85 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=116.0
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|+.|+|||||+++|+..... .+....++.......+.+++ +.++||||||+.+|...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 81 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYT------------ESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 81 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCC------------SCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTT
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCC------------CCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhh
Confidence 35689999999999999999999976322 22233444455555555655 68999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+++.+|++|+|+|+.+....+ ...++..+... ++|+++|+||+|+...+..... +...+...++
T Consensus 82 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~~~~----~~~~~~~~~~----- 152 (196)
T 3tkl_A 82 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVDYT----TAKEFADSLG----- 152 (196)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCHH----HHHHHHHHTT-----
T ss_pred HHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccCHH----HHHHHHHHcC-----
Confidence 999999999999999998754322 23444545444 7899999999999654322111 2223333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |++++++.|.+.+.
T Consensus 153 --~~~~~~Sa~~g~--------------gv~~l~~~l~~~i~ 178 (196)
T 3tkl_A 153 --IPFLETSAKNAT--------------NVEQSFMTMAAEIK 178 (196)
T ss_dssp --CCEEEECTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CcEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999998 99999999887663
No 52
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.79 E-value=1.1e-18 Score=169.26 Aligned_cols=160 Identities=21% Similarity=0.194 Sum_probs=114.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+|+|+.|+|||||+++|+........ ..|+......+.+++..++||||||+.+|...+..
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 86 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFNEDM--------------IPTVGFNMRKITKGNVTIKLWDIGGQPRFRSMWER 86 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSC--------------CCCCSEEEEEEEETTEEEEEEEECCSHHHHTTHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCCCcc--------------CCCCceeEEEEEeCCEEEEEEECCCCHhHHHHHHH
Confidence 3579999999999999999999976432111 11222233446778999999999999999998999
Q ss_pred HHhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+|++|+|+|+.+... .....++..+.. .++|+++|+||+|+...... .++.+ .+....+ ....
T Consensus 87 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~~~----~~~~~~~--~~~~ 158 (188)
T 1zd9_A 87 YCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGALDE--KELIE----KMNLSAI--QDRE 158 (188)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCCH--HHHHH----HTTGGGC--CSSC
T ss_pred HHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCCCH--HHHHH----HhChhhh--ccCC
Confidence 9999999999999987533 333344544443 57899999999999654221 12211 1111111 1134
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++++||++|. |+++++++|.+.+..
T Consensus 159 ~~~~~~SA~~g~--------------gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 159 ICCYSISCKEKD--------------NIDITLQWLIQHSKS 185 (188)
T ss_dssp EEEEECCTTTCT--------------THHHHHHHHHHTCC-
T ss_pred eeEEEEECCCCC--------------CHHHHHHHHHHHHHh
Confidence 689999999998 999999999988754
No 53
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.79 E-value=2.9e-19 Score=183.01 Aligned_cols=151 Identities=20% Similarity=0.255 Sum_probs=117.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG------ 134 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~------ 134 (662)
++|+++|++|+|||||+++|++. ........|+|+......+.+++..++||||||+.+|..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~------------~~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~ 69 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNA------------NQRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGIS 69 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTT------------SEEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------C
T ss_pred CEEEEECCCCCCHHHHHHHHHCC------------CCCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCC
Confidence 68999999999999999999876 223445568999989999999999999999999998864
Q ss_pred ----HHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 135 ----EVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 135 ----ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
....++ ..+|++|+|+|+.+ ......++.++.+.++|+++|+||+|+..... +...+..+...+|
T Consensus 70 ~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~-----~~~~~~~l~~~lg-- 140 (256)
T 3iby_A 70 QDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRG-----ISIDTEKLESLLG-- 140 (256)
T ss_dssp HHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTT-----CEECHHHHHHHHC--
T ss_pred HHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCC-----cHHHHHHHHHHcC--
Confidence 233455 78999999999987 45566677788888999999999999742111 0011112222233
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
+|++++||++|. |+++|+++|.+.
T Consensus 141 -----~~vi~~SA~~g~--------------gi~el~~~i~~~ 164 (256)
T 3iby_A 141 -----CSVIPIQAHKNI--------------GIPALQQSLLHC 164 (256)
T ss_dssp -----SCEEECBGGGTB--------------SHHHHHHHHHTC
T ss_pred -----CCEEEEECCCCC--------------CHHHHHHHHHhh
Confidence 589999999998 999999999886
No 54
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.79 E-value=9.1e-19 Score=166.83 Aligned_cols=158 Identities=19% Similarity=0.186 Sum_probs=111.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+|+|+.|+|||||+++|+...... .....+++......+.+++ ..+.||||||+.+|...+.
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 81 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYDSFDN------------TYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIP 81 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSCCCS------------SCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCC------------CCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHH
Confidence 4689999999999999999999763321 1122333333344444544 6899999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchh-hHHHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+|++|+|+|+.+.... ....++..+.. .++|+++|+||+|+......... +...+....+
T Consensus 82 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~------- 150 (179)
T 2y8e_A 82 SYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTE----EGERKAKELN------- 150 (179)
T ss_dssp HHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGGCCSCHH----HHHHHHHHHT-------
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCcccccCcCCHH----HHHHHHHHcC-------
Confidence 999999999999999875332 23334444433 37899999999998542221111 1222233332
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++++||++|. |++++++.|.+.++.
T Consensus 151 ~~~~~~Sa~~~~--------------~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 151 VMFIETSAKAGY--------------NVKQLFRRVAAALPG 177 (179)
T ss_dssp CEEEEEBTTTTB--------------SHHHHHHHHHHTCC-
T ss_pred CeEEEEeCCCCC--------------CHHHHHHHHHHHHhh
Confidence 579999999998 999999999988764
No 55
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.79 E-value=9.7e-19 Score=165.17 Aligned_cols=161 Identities=20% Similarity=0.184 Sum_probs=115.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|+.|+|||||+++|+....... .....|.+.......+......+.||||||+.+|......
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 74 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPN----------INPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPM 74 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTT----------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHH
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCC----------CCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHh
Confidence 356999999999999999999998743211 1222355554444444444578999999999999998899
Q ss_pred HHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+...+... .++...+.... .+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v~----~~~~~~~~~~~-------~~ 143 (170)
T 1z0j_A 75 YYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVM----ERDAKDYADSI-------HA 143 (170)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGGCCSC----HHHHHHHHHHT-------TC
T ss_pred hCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccccccC----HHHHHHHHHHc-------CC
Confidence 9999999999999987654444 3444555544 56788999999995422111 11222233333 25
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+++++||++|. |+++|++.|.+.++.
T Consensus 144 ~~~~~Sa~~~~--------------~i~~l~~~i~~~i~~ 169 (170)
T 1z0j_A 144 IFVETSAKNAI--------------NINELFIEISRRIPS 169 (170)
T ss_dssp EEEECBTTTTB--------------SHHHHHHHHHHHCCC
T ss_pred EEEEEeCCCCc--------------CHHHHHHHHHHHHhc
Confidence 79999999998 999999999988763
No 56
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.79 E-value=5e-19 Score=171.44 Aligned_cols=162 Identities=20% Similarity=0.166 Sum_probs=115.6
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHH
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev 136 (662)
.+...+|+|+|+.|+|||||+++|+........ ....|++.......+..+...++||||||+.+|....
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 88 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAF----------VSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTIT 88 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSC----------CCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSG
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHcCCCCCCc----------CCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhH
Confidence 345689999999999999999999987432111 1122444444444444456789999999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCchh-hHHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+++.+|++|+|+|+.+.... ....++..+... +.|+++|+||+|+....... .+++..+...++
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------ 158 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVP----AEDGRRLADDLG------ 158 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT------
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccCCC----HHHHHHHHHHcC------
Confidence 8899999999999999875433 334455555554 78999999999985422111 122233333333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++++.|.+.++
T Consensus 159 -~~~~~~Sa~~g~--------------gi~~l~~~l~~~i~ 184 (189)
T 2gf9_A 159 -FEFFEASAKENI--------------NVKQVFERLVDVIC 184 (189)
T ss_dssp -CEEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred -CeEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999998 99999999987653
No 57
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.79 E-value=3.2e-19 Score=184.55 Aligned_cols=156 Identities=25% Similarity=0.318 Sum_probs=119.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH-----
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG----- 134 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~----- 134 (662)
..+|+++|++|+|||||+++|++. ........|+|+......+.+.+..++||||||+.+|..
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~------------~~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~ 70 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS------------RQRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQT 70 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT------------CEEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----C
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC------------CcccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccC
Confidence 358999999999999999999876 123445578999999999999999999999999998762
Q ss_pred ----H-HHHH--HhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006068 135 ----E-VERV--VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (662)
Q Consensus 135 ----e-v~~~--l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~ 207 (662)
. ...+ .+.+|++|+|+|+.+ ......++.++.+.++|+|+|+||+|+..... +...+..+...+|
T Consensus 71 ~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~-----~~~~~~~l~~~lg- 142 (274)
T 3i8s_A 71 SLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQN-----IRIEIDALSARLG- 142 (274)
T ss_dssp CHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHTT-----EEECHHHHHHHHT-
T ss_pred CHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhhh-----HHHHHHHHHHhcC-
Confidence 1 1122 268999999999987 45566777888888999999999999742111 0011122222233
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
+|++++||++|. |+++|+++|.+.++..
T Consensus 143 ------~~~i~~SA~~g~--------------gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 143 ------CPVIPLVSTRGR--------------GIEALKLAIDRYKANE 170 (274)
T ss_dssp ------SCEEECCCGGGH--------------HHHHHHHHHHTCCCCC
T ss_pred ------CCEEEEEcCCCC--------------CHHHHHHHHHHHHhcC
Confidence 579999999998 9999999999988754
No 58
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.78 E-value=1e-18 Score=171.63 Aligned_cols=160 Identities=17% Similarity=0.186 Sum_probs=111.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|+.|+|||||+++|+...... +....++.......+.+++ ..++||||||+.+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 94 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSE------------RQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTI 94 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSCC----------------------CEEEEEEEETTEEEEEEEECCTTCGGGHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCCCCC------------CCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 456899999999999999999998763211 1111222233334455555 68999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchh-hHHHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+++.+|++|+|+|+.+.... ....++..+.. .++|+++|+||+|+...+... .+++.++....++
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~~---- 166 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVS----LAEAQSLAEHYDI---- 166 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC----HHHHHHHHHHTTC----
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccccccC----HHHHHHHHHHcCC----
Confidence 99999999999999998875332 23345555554 468899999999996422111 1223334444432
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.+++++||++|. |++++++.|.+.+.
T Consensus 167 --~~~~~~SA~~g~--------------gi~~l~~~l~~~i~ 192 (201)
T 2hup_A 167 --LCAIETSAKDSS--------------NVEEAFLRVATELI 192 (201)
T ss_dssp --SEEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 169999999998 99999999988764
No 59
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.78 E-value=7.4e-19 Score=167.71 Aligned_cols=159 Identities=17% Similarity=0.152 Sum_probs=111.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC---eeEEEEeCCCCccchHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE---NELNMVDTPGHADFGGE 135 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~---~~iniIDTPGh~dF~~e 135 (662)
+..+|+++|++|+|||||+++|+..... .+....++.+.....+.+.+ ..++||||||+.+|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 72 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFG------------KQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKM 72 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTT------------HHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTT
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCC------------CCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccch
Confidence 4579999999999999999999976321 11112222223334455554 78999999999999998
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc-----CCC-cEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY-----GLR-PILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~-----~lp-~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
...+++.+|++|+|+|+.+....+. ..++..+... +.| +++|+||+|+.+..... .++...+....+
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-- 146 (178)
T 2hxs_A 73 LDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIK----PEKHLRFCQENG-- 146 (178)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSSC----HHHHHHHHHHHT--
T ss_pred hhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccccccC----HHHHHHHHHHcC--
Confidence 9999999999999999987544332 3344444442 667 68899999985422111 112223333333
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+|++++||++|. |++++++.|.+.++.
T Consensus 147 -----~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 147 -----FSSHFVSAKTGD--------------SVFLCFQKVAAEILG 173 (178)
T ss_dssp -----CEEEEECTTTCT--------------THHHHHHHHHHHHTT
T ss_pred -----CcEEEEeCCCCC--------------CHHHHHHHHHHHHHh
Confidence 579999999998 999999999988764
No 60
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.78 E-value=1.9e-18 Score=162.93 Aligned_cols=161 Identities=18% Similarity=0.184 Sum_probs=111.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|+.|+|||||+++|+........ ....|.+.......+......+.||||||+.+|......++
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 73 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENK----------EPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYY 73 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSCCCTTC----------CCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhh
Confidence 58999999999999999999977432111 11223444333333333456899999999999999999999
Q ss_pred hhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 141 GMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
+.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+......+ ....++...+....+ +++
T Consensus 74 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~v~~~~~~~~~~~~~-------~~~ 145 (170)
T 1ek0_A 74 RNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQEGGER-KVAREEGEKLAEEKG-------LLF 145 (170)
T ss_dssp TTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCC-CSCHHHHHHHHHHHT-------CEE
T ss_pred ccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccc-CCCHHHHHHHHHHcC-------CEE
Confidence 999999999999876443333 34444443 378899999999985431100 000111222333333 479
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++||++|. |++++++.|.+.++
T Consensus 146 ~~~Sa~~~~--------------gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 146 FETSAKTGE--------------NVNDVFLGIGEKIP 168 (170)
T ss_dssp EECCTTTCT--------------THHHHHHHHHTTSC
T ss_pred EEEeCCCCC--------------CHHHHHHHHHHHHh
Confidence 999999998 99999999998875
No 61
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.78 E-value=1.3e-18 Score=168.01 Aligned_cols=161 Identities=17% Similarity=0.145 Sum_probs=111.9
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec-----------CeeEEEE
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR-----------ENELNMV 124 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~-----------~~~iniI 124 (662)
..+...+|+|+|++|+|||||+++|+..........+ .+.+... ...+.+. ...++||
T Consensus 7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t----------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~ 75 (195)
T 3bc1_A 7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITT----------VGIDFRE-KRVVYRANGPDGAVGRGQRIHLQLW 75 (195)
T ss_dssp CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCC----------CSEEEEE-EEEEECTTSCCCSSCCCEEEEEEEE
T ss_pred ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccc----------cceeeee-EEEEEecCCcccccccCcEEEEEEE
Confidence 3445789999999999999999999976432111111 1222210 2223333 4689999
Q ss_pred eCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHH
Q 006068 125 DTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVF 199 (662)
Q Consensus 125 DTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~ 199 (662)
||||+.+|......+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+....... .+++.
T Consensus 76 Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~ 151 (195)
T 3bc1_A 76 DTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVK----EEEAR 151 (195)
T ss_dssp EECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCSC----HHHHH
T ss_pred eCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC----HHHHH
Confidence 999999999999999999999999999987654443 344444444 478999999999985422111 12223
Q ss_pred HHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++....+ +|++++||++|. |++++++.|.+.+
T Consensus 152 ~~~~~~~-------~~~~~~Sa~~~~--------------~v~~l~~~l~~~~ 183 (195)
T 3bc1_A 152 ELAEKYG-------IPYFETSAANGT--------------NISHAIEMLLDLI 183 (195)
T ss_dssp HHHHHHT-------CCEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred HHHHHcC-------CCEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 3333333 469999999998 9999999998765
No 62
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.78 E-value=3.1e-19 Score=170.44 Aligned_cols=159 Identities=21% Similarity=0.222 Sum_probs=114.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|++|+|||||+++|+.... ..+...+++.......+.+++ +.++||||||+.+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 74 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADNTF------------SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTI 74 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSCC---------------CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC------------CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhh
Confidence 4578999999999999999999986522 122334555555556666666 78999999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHHH-HHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTKF-VLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
...+++.+|++|+|+|+.++...+... ++..+... ++|+++|+||+|+......... +...+....+
T Consensus 75 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~----~~~~~~~~~~------ 144 (181)
T 3tw8_B 75 TSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETE----DAYKFAGQMG------ 144 (181)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGGCCSCHH----HHHHHHHHHT------
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchhcccCHH----HHHHHHHHcC------
Confidence 888899999999999998864444333 44444443 5889999999998643221111 2222333333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |++++++.|.+.+.
T Consensus 145 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 170 (181)
T 3tw8_B 145 -IQLFETSAKENV--------------NVEEMFNCITELVL 170 (181)
T ss_dssp -CCEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred -CeEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 469999999998 99999999987653
No 63
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.78 E-value=1.7e-18 Score=168.17 Aligned_cols=157 Identities=15% Similarity=0.153 Sum_probs=108.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-------------------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE------------------- 118 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~------------------- 118 (662)
+...+|+|+|++|+|||||+++|+..........++ |. ......+.+++
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTI----------GA--SFCTYVVNLNDINIKNNSNNEKNNNINSIN 72 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCC----------SC--EEEEEEEETTC-------------------
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccc----------cc--eeEEEEEEecCccccccccccccccccccc
Confidence 346799999999999999999999875432211111 11 11111111111
Q ss_pred --------------------eeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH-cCCCcEE
Q 006068 119 --------------------NELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK-YGLRPIL 176 (662)
Q Consensus 119 --------------------~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~-~~lp~Iv 176 (662)
..++||||||+.+|......+++.+|++|+|+|+.++...+.. .++..+.. .+.|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piil 152 (208)
T 3clv_A 73 DDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIIL 152 (208)
T ss_dssp ------------CCCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred cccccccccccccccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 7899999999999999999999999999999999887544443 34444443 5789999
Q ss_pred EeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 177 LLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 177 viNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|+||+|... .... .+++.+++...+ +|++++||++|. |+++++++|.+.+
T Consensus 153 v~NK~D~~~-~~~~----~~~~~~~~~~~~-------~~~~~~Sa~~~~--------------~i~~l~~~l~~~~ 202 (208)
T 3clv_A 153 VANKIDKNK-FQVD----ILEVQKYAQDNN-------LLFIQTSAKTGT--------------NIKNIFYMLAEEI 202 (208)
T ss_dssp EEECTTCC--CCSC----HHHHHHHHHHTT-------CEEEEECTTTCT--------------THHHHHHHHHHHH
T ss_pred EEECCCccc-ccCC----HHHHHHHHHHcC-------CcEEEEecCCCC--------------CHHHHHHHHHHHH
Confidence 999999422 1111 223334444333 579999999998 9999999987654
No 64
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.78 E-value=7.8e-19 Score=169.01 Aligned_cols=156 Identities=19% Similarity=0.176 Sum_probs=111.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|+.|+|||||+++|+.... .......| .....+.+++..++||||||+.+|...+..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~-----------~~~~~t~~----~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 84 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEV-----------VHTSPTIG----SNVEEIVINNTRFLMWDIGGQESLRSSWNT 84 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSC-----------EEEECCSS----SSCEEEEETTEEEEEEEESSSGGGTCGGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCC-----------CccCCcCc----eeeEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 457999999999999999999997632 11111112 223456678899999999999999888888
Q ss_pred HHhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+|++|+|+|+.+... .....++..+.. .++|+++|+||+|+...... .+ +.+.+..... ....
T Consensus 85 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~----i~~~~~~~~~--~~~~ 156 (181)
T 2h17_A 85 YYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTV--AE----ISQFLKLTSI--KDHQ 156 (181)
T ss_dssp GGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HH----HHHHTTGGGC--CSSC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCCCH--HH----HHHHhCcccc--cCCc
Confidence 9999999999999987643 334445555543 57899999999999653211 12 2222211111 1234
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
++++++||++|. |+++++++|.+.
T Consensus 157 ~~~~~~Sa~~g~--------------gi~~l~~~l~~~ 180 (181)
T 2h17_A 157 WHIQACCALTGE--------------GLCQGLEWMMSR 180 (181)
T ss_dssp EEEEECBTTTTB--------------THHHHHHHHHTC
T ss_pred eEEEEccCCCCc--------------CHHHHHHHHHhh
Confidence 689999999998 999999999865
No 65
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.78 E-value=1.4e-18 Score=170.05 Aligned_cols=159 Identities=19% Similarity=0.149 Sum_probs=113.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+|+|++|+|||||+++|+........ ....|++.......+......++||||||+.+|...+..
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 76 (203)
T 1zbd_A 7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAF----------VSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTA 76 (203)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCCSCC----------CCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHT
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----------CCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHH
Confidence 4679999999999999999999976432111 112244444444444444578999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCchhhH-HHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+++.+|++|+|+|+.++...+. ..++..+.. .+.|+++|+||+|+....... .+++..+...++ +
T Consensus 77 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~ 145 (203)
T 1zbd_A 77 YYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVS----SERGRQLADHLG-------F 145 (203)
T ss_dssp TGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTSCCSC----HHHHHHHHHHHT-------C
T ss_pred hhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcccccC----HHHHHHHHHHCC-------C
Confidence 9999999999999987644333 344455554 378999999999996532211 112223333333 4
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+++++||++|. |+++++++|.+.+
T Consensus 146 ~~~~~Sa~~~~--------------gi~~l~~~l~~~i 169 (203)
T 1zbd_A 146 EFFEASAKDNI--------------NVKQTFERLVDVI 169 (203)
T ss_dssp EEEECBTTTTB--------------SSHHHHHHHHHHH
T ss_pred eEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 79999999998 9999988887655
No 66
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=7.8e-19 Score=170.66 Aligned_cols=166 Identities=14% Similarity=0.085 Sum_probs=114.9
Q ss_pred CCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccc
Q 006068 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADF 132 (662)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF 132 (662)
.......+|+++|+.|+|||||+++|+..........++.+ .. ...+.+++ +.++||||||+.+|
T Consensus 13 ~~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~----------~~---~~~~~~~~~~~~~~i~D~~G~~~~ 79 (194)
T 2atx_A 13 GPGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFD----------HY---AVSVTVGGKQYLLGLYDTAGQEDY 79 (194)
T ss_dssp CCEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCC----------CE---EEEEESSSCEEEEEEECCCCSSSS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccc----------ee---EEEEEECCEEEEEEEEECCCCcch
Confidence 33345679999999999999999999987443222222211 11 12233443 78999999999999
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHH---------HHHHHH
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDE---------VESLVF 199 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~e---------i~~~v~ 199 (662)
......+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+..... .... ..++..
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~ 158 (194)
T 2atx_A 80 DRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPK-TLARLNDMKEKPICVEQGQ 158 (194)
T ss_dssp TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHH-HHHHHTTTTCCCCCHHHHH
T ss_pred hHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccccc-chhhcccccCcccCHHHHH
Confidence 88888889999999999999876443333 455666655 899999999999965321 0000 012233
Q ss_pred HHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.+...++. .+++++||++|. |++++++.|.+.+..
T Consensus 159 ~~~~~~~~------~~~~~~Sa~~g~--------------gi~~l~~~l~~~i~~ 193 (194)
T 2atx_A 159 KLAKEIGA------CCYVECSALTQK--------------GLKTVFDEAIIAILT 193 (194)
T ss_dssp HHHHHHTC------SCEEECCTTTCT--------------THHHHHHHHHHHHHC
T ss_pred HHHHHcCC------cEEEEeeCCCCC--------------CHHHHHHHHHHHHhc
Confidence 33344442 269999999998 999999999887644
No 67
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.78 E-value=5.6e-18 Score=159.35 Aligned_cols=155 Identities=17% Similarity=0.206 Sum_probs=110.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVG 141 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~ 141 (662)
+|+++|++|+|||||+++|+...... . .. |+......+.+++..++||||||+.+|...+..+++
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~--------~---~~----t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~ 66 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVT--------T---IP----TIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQ 66 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSC--------C---CC----CSSCCEEEEECSSCEEEEEECCCCGGGHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCc--------c---cC----cCceeEEEEEECCEEEEEEEcCCChhhHHHHHHHhc
Confidence 79999999999999999999874221 0 11 222334456678899999999999999988889999
Q ss_pred hcceEEEEeeCCCCchh-hHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 142 MVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+|++++|+|+.+.... ....++..... .+.|+++|+||+|+.+... ..++. +.+....+ ....+|+
T Consensus 67 ~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~----~~~~~~~~--~~~~~~~ 138 (164)
T 1r8s_A 67 NTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN--AAEIT----DKLGLHSL--RHRNWYI 138 (164)
T ss_dssp TCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH----HHTTGGGC--SSCCEEE
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCCC--HHHHH----HHhCcccc--cCccEEE
Confidence 99999999999876432 23344444443 2789999999999965322 11221 11111111 1124689
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++||++|. |++++++.|.+.++
T Consensus 139 ~~~Sa~~~~--------------gi~~l~~~l~~~i~ 161 (164)
T 1r8s_A 139 QATCATSGD--------------GLYEGLDWLSNQLR 161 (164)
T ss_dssp EECBTTTTB--------------THHHHHHHHHHHC-
T ss_pred EEcccCCCc--------------CHHHHHHHHHHHHh
Confidence 999999998 99999999998775
No 68
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.6e-18 Score=165.71 Aligned_cols=160 Identities=20% Similarity=0.169 Sum_probs=104.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
+...+|+++|++|+|||||+++|+...... ......++.......+.+++ ..++||||||+.+|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-----------~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~ 76 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLA-----------GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSV 76 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCC-----------CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCC-----------CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 346799999999999999999999874321 11112222232333333443 58999999999999988
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
+..+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+......... +...+....+
T Consensus 77 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~~----~~~~~~~~~~----- 147 (180)
T 2g6b_A 77 THAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHERVVKRE----DGEKLAKEYG----- 147 (180)
T ss_dssp --CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSCCCSCHH----HHHHHHHHHT-----
T ss_pred HHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcccccCHH----HHHHHHHHcC-----
Confidence 8889999999999999987644333 344445544 57899999999999653221111 2222333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |+++++++|.+.+.
T Consensus 148 --~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 173 (180)
T 2g6b_A 148 --LPFMETSAKTGL--------------NVDLAFTAIAKELK 173 (180)
T ss_dssp --CCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 469999999998 99999999987764
No 69
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=2.3e-18 Score=162.69 Aligned_cols=160 Identities=18% Similarity=0.127 Sum_probs=110.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|++|+|||||+++|+..........++ +.+.. ....+......++||||||+.+|......+
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~----------~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~ 71 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTV----------EDTYR-QVISCDKSICTLQITDTTGSHQFPAMQRLS 71 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCS----------CEEEE-EEEEETTEEEEEEEEECCSCSSCHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc----------cccEE-EEEEECCEEEEEEEEECCCchhhHHHHHHh
Confidence 4689999999999999999999753321111111 11111 112222334689999999999999999999
Q ss_pred HhhcceEEEEeeCCCCch-hhHHHHHHHHHH-----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
++.+|++++|+|+.+... .....++..+.+ .++|+++|+||+|+...+..... +...+....+
T Consensus 72 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~----~~~~~~~~~~------- 140 (172)
T 2erx_A 72 ISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSS----EAEALARTWK------- 140 (172)
T ss_dssp HHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHH----HHHHHHHHHT-------
T ss_pred cccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHH----HHHHHHHHhC-------
Confidence 999999999999986533 233445555544 37899999999998543221111 1122222222
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
+|++++||++|. |+++++++|.+.+..+
T Consensus 141 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 141 CAFMETSAKLNH--------------NVKELFQELLNLEKRR 168 (172)
T ss_dssp CEEEECBTTTTB--------------SHHHHHHHHHHTCCSS
T ss_pred CeEEEecCCCCc--------------CHHHHHHHHHHHHhhh
Confidence 479999999998 9999999999987654
No 70
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=170.32 Aligned_cols=167 Identities=17% Similarity=0.144 Sum_probs=108.6
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
..++..+|+|+|+.|+|||||+++|+........ ....|.+.......+......++||||||+.+|...
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 93 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENI----------SATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSI 93 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCCCC--------------------CEEEEEEETTEEEEEEEEECTTCTTCHHH
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccC----------CCCccceeEEEEEEECCEEEEEEEEECCCCcchhhh
Confidence 3445789999999999999999999976422111 112233333333344334578999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH---cCCCcEEEeccCCCCCCCHH-HHHHH-HHHHHHHHHhcCCCC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEE-RCDEV-ESLVFDLFANLGATD 209 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~-~~~ei-~~~v~~l~~~~g~~~ 209 (662)
...+++.+|++|+|+|+.++...+. ..++..+.. .++|+++|+||+|+...... ...++ .++...+....+
T Consensus 94 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~--- 170 (199)
T 2p5s_A 94 AKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYG--- 170 (199)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHT---
T ss_pred HHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHHHHHcC---
Confidence 9999999999999999987654443 334444443 37899999999998421000 00000 112222333333
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |++++++.|.+.+.
T Consensus 171 ----~~~~~~SA~~g~--------------gv~el~~~l~~~i~ 196 (199)
T 2p5s_A 171 ----ALFCETSAKDGS--------------NIVEAVLHLAREVK 196 (199)
T ss_dssp ----CEEEECCTTTCT--------------THHHHHHHHHHHHT
T ss_pred ----CeEEEeeCCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999998 99999999987664
No 71
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.78 E-value=1.2e-18 Score=165.40 Aligned_cols=153 Identities=23% Similarity=0.264 Sum_probs=107.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------ 133 (662)
..+|+++|++|+|||||+++|++... ..+...++|+......+.+++..+++|||||+.+|.
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 70 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENV------------YIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDE 70 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSS------------SCC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSSHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCe------------eccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcchhH
Confidence 36899999999999999999986421 112234666666666777888999999999999875
Q ss_pred HHHHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 134 GEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 134 ~ev~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
.....+++ .+|++++|+|+.+ ......++..+.+.++|+++|+||+|+..... +..+...+...++
T Consensus 71 ~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-----~~~~~~~~~~~~~----- 138 (165)
T 2wji_A 71 IIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLG-----IEIDVDKLEKILG----- 138 (165)
T ss_dssp HHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT-----
T ss_pred HHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCCEEEEEEchHhccccC-----hhhHHHHHHHHhC-----
Confidence 22344444 7899999999876 23344566677778999999999999742110 0001122222233
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||++|. |++++++.|.+.+
T Consensus 139 --~~~~~~SA~~~~--------------~v~~l~~~l~~~~ 163 (165)
T 2wji_A 139 --VKVVPLSAAKKM--------------GIEELKKAISIAV 163 (165)
T ss_dssp --SCEEECBGGGTB--------------SHHHHHHHHHHHT
T ss_pred --CCEEEEEcCCCC--------------CHHHHHHHHHHHh
Confidence 469999999999 9999999998765
No 72
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.78 E-value=9.7e-19 Score=169.82 Aligned_cols=161 Identities=18% Similarity=0.173 Sum_probs=114.3
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHH
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev 136 (662)
.+...+|+|+|++|+|||||+++|+........ ....|.+.......+......++||||||+.+|....
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 91 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDS----------RTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAIT 91 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSC----------CCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCCCCCCC----------CCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhh
Confidence 345689999999999999999999986432211 1122444444444444456789999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+++.+|++|+|+|+.+....+ ...++..+... ++|+++|+||+|+....... .++...+....+
T Consensus 92 ~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------ 161 (193)
T 2oil_A 92 SAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAREVP----TEEARMFAENNG------ 161 (193)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT------
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccccccC----HHHHHHHHHHcC------
Confidence 99999999999999998754432 23444555433 68899999999985432111 112223333333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|. |++++++.|.+.+
T Consensus 162 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 186 (193)
T 2oil_A 162 -LLFLETSALDST--------------NVELAFETVLKEI 186 (193)
T ss_dssp -CEEEEECTTTCT--------------THHHHHHHHHHHH
T ss_pred -CEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 579999999998 9999999987654
No 73
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.77 E-value=2.4e-18 Score=165.27 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=108.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+|+|+.|+|||||+++|+..........++ +... .....+......++||||||+.+|......
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 85 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTI----------EDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQ 85 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC----------CEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc----------ccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHH
Confidence 46799999999999999999999764322211111 1111 222222223356778999999999999999
Q ss_pred HHhhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+|++|+|+|+.+....+ ...++..+.. .++|+++|+||+|+....... .+++..+...++
T Consensus 86 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v~----~~~~~~~~~~~~------- 154 (183)
T 3kkq_A 86 YMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVT----RDQGKEMATKYN------- 154 (183)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCSC----HHHHHHHHHHHT-------
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhccCcC----HHHHHHHHHHhC-------
Confidence 999999999999998753322 2233343333 578999999999986532211 112233333333
Q ss_pred ccEEEcccc-cCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAK-EGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~-~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||+ +|. |++++++.|.+.+
T Consensus 155 ~~~~~~Sa~~~~~--------------~v~~l~~~l~~~i 180 (183)
T 3kkq_A 155 IPYIETSAKDPPL--------------NVDKTFHDLVRVI 180 (183)
T ss_dssp CCEEEEBCSSSCB--------------SHHHHHHHHHHHH
T ss_pred CeEEEeccCCCCC--------------CHHHHHHHHHHHH
Confidence 469999999 998 9999999998754
No 74
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=3.2e-19 Score=173.28 Aligned_cols=160 Identities=19% Similarity=0.141 Sum_probs=116.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
+...+|+|+|+.|+|||||+++|+........ ....|++.......+......++||||||+.+|.....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 90 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAF----------VSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITT 90 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTTCCCE----------EEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHH
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCCCccc----------CCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHH
Confidence 34679999999999999999999987432211 11224455555555556778999999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchh-hHHHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+|++|+|+|+.+.... ....++..+.. .++|+++|+||+|+...+... .++...+....+
T Consensus 91 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------- 159 (191)
T 3dz8_A 91 AYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEERVVP----TEKGQLLAEQLG------- 159 (191)
T ss_dssp HHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-------
T ss_pred HHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC----HHHHHHHHHHcC-------
Confidence 999999999999999875332 23445555555 478999999999985432211 112222333333
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|. |++++++.|.+.+
T Consensus 160 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 184 (191)
T 3dz8_A 160 FDFFEASAKENI--------------SVRQAFERLVDAI 184 (191)
T ss_dssp CEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred CeEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 479999999998 9999999988765
No 75
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.77 E-value=9e-19 Score=168.51 Aligned_cols=159 Identities=21% Similarity=0.134 Sum_probs=112.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
++..+|+|+|+.|+|||||+++|+....... ....++.......+.+++ ..++||||||+.+|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 75 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD------------SNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSV 75 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT------------CCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC------------CCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 3467999999999999999999997643211 122333333334444544 68999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
+..+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+...+.... .+...+....+
T Consensus 76 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~----- 146 (186)
T 2bme_A 76 TRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDADREVTF----LEASRFAQENE----- 146 (186)
T ss_dssp HHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH----HHHHHHHHHcC-----
Confidence 99999999999999999875443333 33333333 4789999999999853222111 12223333332
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++++.|.+.+.
T Consensus 147 --~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 172 (186)
T 2bme_A 147 --LMFLETSALTGE--------------NVEEAFVQCARKIL 172 (186)
T ss_dssp --CEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CEEEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 579999999998 99999999887664
No 76
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.77 E-value=2.8e-18 Score=163.52 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=110.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev 136 (662)
...+|+++|++|+|||||+++|+...... +....++.......+.+++ ..+.||||||+.+|....
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 73 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDT------------QLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLR 73 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC----------------CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCC------------CCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhH
Confidence 46799999999999999999999763221 1122222333334444554 689999999999999988
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH-------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~-------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
..+++.+|++++|+|+.+....+.. .++..+.. .++|+++|+||+|+..... . .+++.++....
T Consensus 74 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~-~----~~~~~~~~~~~--- 145 (177)
T 1wms_A 74 TPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQV-S----TEEAQAWCRDN--- 145 (177)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSSCSS-C----HHHHHHHHHHT---
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccccccc-C----HHHHHHHHHhc---
Confidence 8999999999999999876543332 33333332 5779999999999863211 1 12222333311
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
..+|++++||++|. |++++++.|.+.+.
T Consensus 146 ---~~~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 173 (177)
T 1wms_A 146 ---GDYPYFETSAKDAT--------------NVAAAFEEAVRRVL 173 (177)
T ss_dssp ---TCCCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred ---CCceEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 13579999999998 99999999987763
No 77
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.77 E-value=2.4e-18 Score=161.71 Aligned_cols=155 Identities=15% Similarity=0.131 Sum_probs=104.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+++|+.|+|||||+++|+..........+. +.+. ...+.++ .+.++||||||+.+|.....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~----------~~~~---~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 70 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK----------ADSY---RKKVVLDGEEVQIDILDTAGQEDYAAIRD 70 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTC----------CEEE---EEEEEETTEEEEEEEEECCC---CHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCc----------ceEE---EEEEEECCEEEEEEEEECCCcchhHHHHH
Confidence 4699999999999999999999864321111111 1111 1223333 36899999999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.+++.+|++++|+|+.+...... ..++..+.. .++|+++|+||+|+.+..... .+++..+....+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------ 140 (168)
T 1u8z_A 71 NYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS----VEEAKNRADQWN------ 140 (168)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT------
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccCccC----HHHHHHHHHHcC------
Confidence 99999999999999987543222 333344433 278999999999985432211 122233333333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||++|. |+++++++|.+.+
T Consensus 141 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 165 (168)
T 1u8z_A 141 -VNYVETSAKTRA--------------NVDKVFFDLMREI 165 (168)
T ss_dssp -CEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred -CeEEEeCCCCCC--------------CHHHHHHHHHHHH
Confidence 479999999998 9999999998764
No 78
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.77 E-value=1.1e-18 Score=169.57 Aligned_cols=160 Identities=18% Similarity=0.188 Sum_probs=110.1
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
....+|+|+|+.|+|||||+++|+......... ...+.+.......+......++||||||+.+|.....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~----------~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 88 (191)
T 2a5j_A 19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD----------LTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITR 88 (191)
T ss_dssp CEEEEEEEESSTTSSHHHHHHHHHHSCCCC---------------CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCH
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCC----------CcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHH
Confidence 446799999999999999999999864321111 1113333333333322346899999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+....... .++...+....+
T Consensus 89 ~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~------- 157 (191)
T 2a5j_A 89 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESRRDVK----REEGEAFAREHG------- 157 (191)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-------
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCccccC----HHHHHHHHHHcC-------
Confidence 99999999999999987543333 3455555543 78999999999985422111 112223333333
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|. |++++++.|.+.+
T Consensus 158 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 182 (191)
T 2a5j_A 158 LIFMETSAKTAC--------------NVEEAFINTAKEI 182 (191)
T ss_dssp CEEEEECTTTCT--------------THHHHHHHHHHHH
T ss_pred CEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 469999999998 9999999988765
No 79
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.77 E-value=1.4e-18 Score=164.34 Aligned_cols=158 Identities=16% Similarity=0.176 Sum_probs=112.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|+.|+|||||+++|+...... . ..|+......+.+++..++||||||+.+|...+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-----------~----~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 70 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVGEVVT-----------T----IPTIGFNVETVTYKNLKFQVWDLGGLTSIRPYWRC 70 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHSSCCC-----------C----CCCSSEEEEEEEETTEEEEEEEECCCGGGGGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCC-----------c----CCcCccceEEEEECCEEEEEEECCCChhhhHHHHH
Confidence 35799999999999999999998763211 0 11222334556778999999999999999888888
Q ss_pred HHhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+|++|+|+|+.+... .....++..... .+.|+++|+||+|+...... .++.+ .+....+ ....
T Consensus 71 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~----~~~~~~~--~~~~ 142 (171)
T 1upt_A 71 YYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTS--SEMAN----SLGLPAL--KDRK 142 (171)
T ss_dssp GCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHHHH----HHTGGGC--TTSC
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH--HHHHH----HhCchhc--cCCc
Confidence 8999999999999987643 233344444433 47899999999999654321 22222 1111111 1124
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |+++++++|.+.++
T Consensus 143 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~ 168 (171)
T 1upt_A 143 WQIFKTSATKGT--------------GLDEAMEWLVETLK 168 (171)
T ss_dssp EEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred eEEEECcCCCCc--------------CHHHHHHHHHHHHh
Confidence 689999999998 99999999988764
No 80
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=164.40 Aligned_cols=158 Identities=16% Similarity=0.142 Sum_probs=102.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc--chHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD--FGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d--F~~ev 136 (662)
...+|+|+|++|+|||||+++|+...... .....|.+.......+......+++|||||+.+ +....
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~ 71 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERD-----------LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQ 71 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC----------------CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcc-----------ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhH
Confidence 35699999999999999999998653211 112235554444333333345889999999988 55556
Q ss_pred HHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHHc----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+++.+|++++|+|+.+....+ ...++..+... ++|+++|+||+|+......... +...+....+
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v~~~----~~~~~~~~~~----- 142 (175)
T 2nzj_A 72 ESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCREVSVE----EGRACAVVFD----- 142 (175)
T ss_dssp HHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTCCSCHH----HHHHHHHHHT-----
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccccccCHH----HHHHHHHHcC-----
Confidence 66778899999999988654332 33455555554 7899999999999653221111 1222222222
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||++|. |++++++.|.+.+
T Consensus 143 --~~~~~~Sa~~g~--------------gi~~l~~~l~~~~ 167 (175)
T 2nzj_A 143 --CKFIETSATLQH--------------NVAELFEGVVRQL 167 (175)
T ss_dssp --SEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred --CeEEEEecCCCC--------------CHHHHHHHHHHHH
Confidence 579999999998 9999999998765
No 81
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.77 E-value=2.3e-18 Score=189.93 Aligned_cols=155 Identities=23% Similarity=0.337 Sum_probs=116.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc---------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD--------- 131 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d--------- 131 (662)
++|+|+|.+|+|||||+|+|++... ...+...|+|.+.....+.|++..++||||||+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~-----------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~ 70 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKK-----------AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQK 70 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC-------------------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCC-----------ceecCCCCCccceeeEEEEECCeEEEEEECCCccccccchHHHH
Confidence 5799999999999999999997621 12344569999999999999999999999999765
Q ss_pred chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHH-HHHHHhcCCCCc
Q 006068 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLV-FDLFANLGATDE 210 (662)
Q Consensus 132 F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v-~~l~~~~g~~~~ 210 (662)
+...+..+++.+|++|+|+|+.++....+..+...+...++|+++|+||+|+.. . ...++ .++ ..+|+.
T Consensus 71 ~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~----~---~~~~~~~~~-~~lg~~-- 140 (439)
T 1mky_A 71 MKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR----E---FEREVKPEL-YSLGFG-- 140 (439)
T ss_dssp HHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHH----H---HHHHTHHHH-GGGSSC--
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc----c---cHHHHHHHH-HhcCCC--
Confidence 235567789999999999999999988888888878888999999999999732 1 01122 232 344542
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+++++||++|. |+.+|++.|.+.+|.
T Consensus 141 ----~~~~iSA~~g~--------------gv~~L~~~i~~~l~~ 166 (439)
T 1mky_A 141 ----EPIPVSAEHNI--------------NLDTMLETIIKKLEE 166 (439)
T ss_dssp ----SCEECBTTTTB--------------SHHHHHHHHHHHHHH
T ss_pred ----CEEEEeccCCC--------------CHHHHHHHHHHhccc
Confidence 47899999999 999999999988864
No 82
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.77 E-value=1.5e-18 Score=163.90 Aligned_cols=156 Identities=20% Similarity=0.191 Sum_probs=108.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+++|++|+|||||+++|+...... .....++.......+.+++ ..+.||||||+.+|...+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~ 70 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNP------------SFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITT 70 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC-------------------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCC------------CCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHH
Confidence 5689999999999999999999763211 1122233333333444443 6899999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+|++|+|+|+.+....+. ..++..+... +.|+++|+||+|+..... . .++..++....+
T Consensus 71 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~----~~~~~~~~~~~~------- 138 (170)
T 1g16_A 71 AYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV-T----ADQGEALAKELG------- 138 (170)
T ss_dssp HHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTCCS-C----HHHHHHHHHHHT-------
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCcCcc-C----HHHHHHHHHHcC-------
Confidence 99999999999999987543332 3455555443 789999999999843221 1 112223333333
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |++++++.|.+.+.
T Consensus 139 ~~~~~~Sa~~~~--------------gv~~l~~~l~~~~~ 164 (170)
T 1g16_A 139 IPFIESSAKNDD--------------NVNEIFFTLAKLIQ 164 (170)
T ss_dssp CCEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCC--------------CHHHHHHHHHHHHH
Confidence 469999999998 99999999987764
No 83
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.77 E-value=2.1e-18 Score=167.25 Aligned_cols=159 Identities=16% Similarity=0.160 Sum_probs=113.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcC-CCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG-ADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g-~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
+..+|+++|+.|+|||||+++|+.... ... ...|+......+.+++..++||||||+.+|.....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--------------~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 85 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--------------ILPTIGFSIEKFKSSSLSFTVFDMSGQGRYRNLWE 85 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--------------CCCCSSEEEEEEECSSCEEEEEEECCSTTTGGGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--------------cCCccceeEEEEEECCEEEEEEECCCCHHHHHHHH
Confidence 457999999999999999999987631 111 12233334456677789999999999999998888
Q ss_pred HHHhhcceEEEEeeCCCCch-hhHHHHHHHHHH------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 138 RVVGMVEGAILVVDAGEGPL-AQTKFVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
.+++.+|++|+|+|+.+... .....++..+.. .++|+++|+||+|+..... ..+ +.+.+....+.
T Consensus 86 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~----~~~~~~~~~~~-- 157 (190)
T 2h57_A 86 HYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAVT--SVK----VSQLLCLENIK-- 157 (190)
T ss_dssp GGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCCC--HHH----HHHHHTGGGCC--
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCCC--HHH----HHHHhChhhcc--
Confidence 89999999999999987532 233345555544 4789999999999965321 122 22222111111
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
...++++++||++|. |++++++.|.+.+.
T Consensus 158 ~~~~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~ 186 (190)
T 2h57_A 158 DKPWHICASDAIKGE--------------GLQEGVDWLQDQIQ 186 (190)
T ss_dssp SSCEEEEECBTTTTB--------------THHHHHHHHHHHC-
T ss_pred CCceEEEEccCCCCc--------------CHHHHHHHHHHHHH
Confidence 124689999999998 99999999988764
No 84
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.77 E-value=6.9e-19 Score=169.06 Aligned_cols=158 Identities=19% Similarity=0.158 Sum_probs=88.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev 136 (662)
...+|+|+|++|+|||||+++|+.... ..+....++.+.....+.+++ ..++||||||+.+|....
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~~~------------~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 74 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSEDAF------------NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTIT 74 (183)
T ss_dssp EEEEEEEECCCCC----------------------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------C
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCC------------CCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhH
Confidence 467999999999999999999986522 112223344444444555555 789999999999998877
Q ss_pred HHHHhhcceEEEEeeCCCCchh-hHHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+++.+|++|+|+|+.+.... ....++..+... ++|+++|+||+|+.+..... .+++..+....+
T Consensus 75 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~------ 144 (183)
T 2fu5_C 75 TAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKRQVS----KERGEKLALDYG------ 144 (183)
T ss_dssp CTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCCCSC----HHHHHHHHHHHT------
T ss_pred HHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCccCcCC----HHHHHHHHHHcC------
Confidence 8888999999999999875432 233455555553 78999999999996532211 112223333333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++++.|.+.+.
T Consensus 145 -~~~~~~Sa~~~~--------------~i~~l~~~l~~~i~ 170 (183)
T 2fu5_C 145 -IKFMETSAKANI--------------NVENAFFTLARDIK 170 (183)
T ss_dssp -CEEEECCC---C--------------CHHHHHHHHHHHHH
T ss_pred -CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999998 99999999987663
No 85
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.77 E-value=1.2e-18 Score=179.68 Aligned_cols=154 Identities=24% Similarity=0.313 Sum_probs=119.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH-----
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG----- 134 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~----- 134 (662)
.++|+++|++|+|||||+++|++. ........|+|+......+.+++..++||||||+.+|..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~------------~~~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~ 70 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL------------RQHVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSIDE 70 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT------------CEEEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC------------CcccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHHH
Confidence 579999999999999999999875 123445678899988899999999999999999998865
Q ss_pred -HHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcC-CCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 135 -EVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYG-LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 135 -ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~-lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
....++ ..+|++|+|+|+..+ .+...++..+.+.+ +|+++|+||+|+... ..+......+...+|
T Consensus 71 ~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~-----~~~~~~~~~l~~~lg---- 139 (271)
T 3k53_A 71 LIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKK-----KGAKIDIKKMRKELG---- 139 (271)
T ss_dssp HHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHH-----HTCCCCHHHHHHHHS----
T ss_pred HHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCcc-----cccHHHHHHHHHHcC----
Confidence 333444 569999999999874 56677888888888 999999999996321 000001122222333
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |+++|++.|.+.+.
T Consensus 140 ---~~~~~~Sa~~g~--------------gi~~l~~~i~~~~~ 165 (271)
T 3k53_A 140 ---VPVIPTNAKKGE--------------GVEELKRMIALMAE 165 (271)
T ss_dssp ---SCEEECBGGGTB--------------THHHHHHHHHHHHH
T ss_pred ---CcEEEEEeCCCC--------------CHHHHHHHHHHHHh
Confidence 579999999998 99999999987754
No 86
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=169.33 Aligned_cols=159 Identities=20% Similarity=0.228 Sum_probs=109.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|+.|+|||||+++|+...... +....++.......+.+++ ..++||||||+.+|...
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 91 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCE------------ACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSI 91 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC--------------------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCc------------CCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHH
Confidence 346799999999999999999998653211 1112222333334444444 68999999999999999
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+...+... .+++..+...+.
T Consensus 92 ~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~~~~~~~----- 162 (192)
T 2il1_A 92 TSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREIT----RQQGEKFAQQIT----- 162 (192)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSC----HHHHHHHHHTST-----
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccC----HHHHHHHHHhcC-----
Confidence 99999999999999999886554443 333444443 78899999999985422111 112223333221
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++++++||++|. |++++++.|.+.+
T Consensus 163 -~~~~~~~SA~~g~--------------gi~~l~~~l~~~i 188 (192)
T 2il1_A 163 -GMRFCEASAKDNF--------------NVDEIFLKLVDDI 188 (192)
T ss_dssp -TCEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred -CCeEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 3579999999998 9999999998754
No 87
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.77 E-value=9.5e-19 Score=179.38 Aligned_cols=155 Identities=23% Similarity=0.368 Sum_probs=118.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---- 134 (662)
+..+|+++|++|+|||||+++|++.. .......|+|+......+.+++..++||||||+.+|..
T Consensus 4 ~~~kI~lvG~~nvGKTsL~n~l~g~~------------~~~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~ 71 (258)
T 3a1s_A 4 HMVKVALAGCPNVGKTSLFNALTGTK------------QYVANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID 71 (258)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHTTC------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCC------------CcccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH
Confidence 35689999999999999999998751 22344568999998889999999999999999988753
Q ss_pred --HHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 135 --EVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 135 --ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
....++ ..+|++++|+|+.+. .....++.++.+.++|+++|+||+|+..... +..+...+...+|
T Consensus 72 e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~~~-----i~~~~~~l~~~lg---- 140 (258)
T 3a1s_A 72 EKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKKTG-----MKIDRYELQKHLG---- 140 (258)
T ss_dssp HHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHHTT-----CCBCHHHHHHHHC----
T ss_pred HHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCccc-----hHHHHHHHHHHcC----
Confidence 223444 479999999999874 3445677788888999999999999732111 1111222333333
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |+++|++.|.+.++
T Consensus 141 ---~~vi~~SA~~g~--------------gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 141 ---IPVVFTSSVTGE--------------GLEELKEKIVEYAQ 166 (258)
T ss_dssp ---SCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred ---CCEEEEEeeCCc--------------CHHHHHHHHHHHhh
Confidence 579999999998 99999999988764
No 88
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.9e-18 Score=170.13 Aligned_cols=160 Identities=18% Similarity=0.128 Sum_probs=111.8
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchH
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGG 134 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ 134 (662)
.+...+|+|+|++|+|||||+++|+....... ....++.+.....+.+++ ..++||||||+.+|..
T Consensus 23 ~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~ 90 (201)
T 2ew1_A 23 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPG------------QGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRS 90 (201)
T ss_dssp CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTT------------CCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHH
T ss_pred cccceEEEEECcCCCCHHHHHHHHHhCCCCCC------------CCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHH
Confidence 34578999999999999999999998633211 112233333334445554 6899999999999998
Q ss_pred HHHHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 135 EVERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 135 ev~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
....+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+....... .++...+....+
T Consensus 91 ~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v~----~~~~~~~~~~~~---- 162 (201)
T 2ew1_A 91 ITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVS----QQRAEEFSEAQD---- 162 (201)
T ss_dssp HHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCSSC----HHHHHHHHHHHT----
T ss_pred HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccC----HHHHHHHHHHcC----
Confidence 88889999999999999987543332 344444444 367899999999985322111 111222222232
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++++.|.+.+.
T Consensus 163 ---~~~~~~Sa~~g~--------------gv~~l~~~l~~~i~ 188 (201)
T 2ew1_A 163 ---MYYLETSAKESD--------------NVEKLFLDLACRLI 188 (201)
T ss_dssp ---CCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 469999999998 99999999987664
No 89
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.77 E-value=1.5e-18 Score=163.59 Aligned_cols=159 Identities=16% Similarity=0.159 Sum_probs=109.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+++|++|+|||||+++|+..........+ .+.+.......+......+.||||||+.+|......
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t----------~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 73 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKT----------IGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKA 73 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCC----------CSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCc----------eEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHH
Confidence 4579999999999999999999976332111111 122222222222223468999999999999888889
Q ss_pred HHhhcceEEEEeeCCCCchhh-HHHHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+++.+|++++|+|+.+....+ ...++..+.. .+.|+++|+||+|+...+... .+++..+....+ ++
T Consensus 74 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~~ 142 (168)
T 1z2a_A 74 YYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDDSCIK----NEEAEGLAKRLK-------LR 142 (168)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-------CE
T ss_pred HhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcccccC----HHHHHHHHHHcC-------Ce
Confidence 999999999999998754322 3334444433 388999999999985422111 112233333333 47
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++++.|.+.+
T Consensus 143 ~~~~Sa~~~~--------------~i~~l~~~l~~~~ 165 (168)
T 1z2a_A 143 FYRTSVKEDL--------------NVSEVFKYLAEKH 165 (168)
T ss_dssp EEECBTTTTB--------------SSHHHHHHHHHHH
T ss_pred EEEEecCCCC--------------CHHHHHHHHHHHH
Confidence 9999999998 9999999998754
No 90
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.77 E-value=3.6e-18 Score=163.82 Aligned_cols=156 Identities=15% Similarity=0.117 Sum_probs=108.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev 136 (662)
+..+|+|+|+.|+|||||+++|+..........+. +.+ ....+.+.+ +.+.||||||+.+|....
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~---~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 83 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK----------ADS---YRKKVVLDGEEVQIDILDTAGQEDYAAIR 83 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTC----------CEE---EEEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCcc----------ceE---EEEEEEECCEEEEEEEEECCCCcccHHHH
Confidence 35799999999999999999999864322111111 111 112233333 589999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+++.+|++++|+|+.+....+. ..++..+.. .++|+++|+||+|+....... .+++..++...+
T Consensus 84 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~----- 154 (187)
T 2a9k_A 84 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS----VEEAKNRAEQWN----- 154 (187)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCSC----HHHHHHHHHHTT-----
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCccC----HHHHHHHHHHcC-----
Confidence 999999999999999987543222 233344333 378999999999985432211 122333333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||++|. |++++++.|.+.+
T Consensus 155 --~~~~~~Sa~~~~--------------gi~~l~~~l~~~i 179 (187)
T 2a9k_A 155 --VNYVETSAKTRA--------------NVDKVFFDLMREI 179 (187)
T ss_dssp --CEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred --CeEEEeCCCCCC--------------CHHHHHHHHHHHH
Confidence 579999999998 9999999998765
No 91
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.76 E-value=7.8e-18 Score=164.08 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=109.0
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHH
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev 136 (662)
..+..+|+++|++|+|||||+++|+.... ... ..|+......+.+++..++||||||+.+|....
T Consensus 26 ~~~~~ki~v~G~~~vGKSsLi~~l~~~~~-----------~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~ 90 (192)
T 2b6h_A 26 GKKQMRILMVGLDAAGKTTILYKLKLGEI-----------VTT----IPTIGFNVETVEYKNICFTVWDVGGQDKIRPLW 90 (192)
T ss_dssp TTSCEEEEEEESTTSSHHHHHHHHCSSCC-----------EEE----EEETTEEEEEEEETTEEEEEEECC-----CTTH
T ss_pred cCCccEEEEECCCCCCHHHHHHHHHhCCc-----------ccc----CCcCceeEEEEEECCEEEEEEECCCCHhHHHHH
Confidence 34567999999999999999999975421 111 112233445567789999999999999999888
Q ss_pred HHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+++.+|++|+|+|+.+....+ ...++..+.. .+.|+++|+||+|+..... ..++. +.+....+ ..
T Consensus 91 ~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~~--~~~i~----~~~~~~~~--~~ 162 (192)
T 2b6h_A 91 RHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAMP--VSELT----DKLGLQHL--RS 162 (192)
T ss_dssp HHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHHHH----HHTTGGGC--SS
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCCC--HHHHH----HHhCcccc--cC
Confidence 89999999999999998764322 3344444433 3789999999999965422 11222 11111111 12
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
..++++++||++|. |+++++++|.+.+.
T Consensus 163 ~~~~~~~~SA~~g~--------------gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 163 RTWYVQATCATQGT--------------GLYDGLDWLSHELS 190 (192)
T ss_dssp CCEEEEECBTTTTB--------------THHHHHHHHHHHTT
T ss_pred CceEEEECcCCCcC--------------CHHHHHHHHHHHHh
Confidence 34689999999998 99999999998764
No 92
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.76 E-value=5.6e-18 Score=165.64 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=110.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev 136 (662)
+..+|+|+|+.|+|||||+++|+..........+. +.+. ...+.+++ +.++||||||+.+|....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 79 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK----------ADSY---RKKVVLDGEEVQIDILDTAGQEDYAAIR 79 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTC----------CEEE---EEEEEETTEEEEEEEEECCCTTCCHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc----------ceEE---EEEEEECCEEEEEEEEcCCChhhhHHHH
Confidence 46799999999999999999999874322111111 1111 22333443 589999999999999999
Q ss_pred HHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+++.+|++++|+|+.+...... ..++..+.. .++|+++|+||+|+....... .+++..+....+
T Consensus 80 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~----- 150 (206)
T 2bov_A 80 DNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVS----VEEAKNRAEQWN----- 150 (206)
T ss_dssp HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-----
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccccccc----HHHHHHHHHHhC-----
Confidence 999999999999999987543322 334444443 278999999999996432211 122333333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |+++++++|.+.+.
T Consensus 151 --~~~~~~Sa~~g~--------------gi~~l~~~l~~~i~ 176 (206)
T 2bov_A 151 --VNYVETSAKTRA--------------NVDKVFFDLMREIR 176 (206)
T ss_dssp --CEEEEECTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 469999999998 99999999987764
No 93
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.76 E-value=2.7e-18 Score=166.28 Aligned_cols=159 Identities=16% Similarity=0.165 Sum_probs=113.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+|+|+.|+|||||+++|+........ ....+.+.......+......+.||||||+.+|......+
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~----------~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 84 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDTFDPEL----------AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSY 84 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTC----------CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCccC----------CCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHH
Confidence 579999999999999999999987432111 1122444444444444456789999999999999889999
Q ss_pred HhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+...... .++...+....+ +
T Consensus 85 ~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~~-----~~~~~~~~~~~~-------~ 152 (195)
T 1x3s_A 85 YRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKENREVD-----RNEGLKFARKHS-------M 152 (195)
T ss_dssp HTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSSCCSC-----HHHHHHHHHHTT-------C
T ss_pred hccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcccccC-----HHHHHHHHHHcC-------C
Confidence 999999999999987644333 334444444 36788999999999542211 122233333333 5
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+++++||++|. |+++++++|.+.++.
T Consensus 153 ~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~ 178 (195)
T 1x3s_A 153 LFIEASAKTCD--------------GVQCAFEELVEKIIQ 178 (195)
T ss_dssp EEEECCTTTCT--------------THHHHHHHHHHHHHT
T ss_pred EEEEecCCCCC--------------CHHHHHHHHHHHHHh
Confidence 69999999998 999999999987753
No 94
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.76 E-value=2.2e-18 Score=166.94 Aligned_cols=158 Identities=18% Similarity=0.210 Sum_probs=106.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccch-HH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFG-GE 135 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~-~e 135 (662)
+..+|+|+|+.|+|||||+++|+........ ...++.......+.+++ ..++||||||+.+|. ..
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 86 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT------------EATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSM 86 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC------------CCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC------------CCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhh
Confidence 4679999999999999999999976432111 11222222233344443 689999999999998 77
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
...+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+...+... .++...+....+
T Consensus 87 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~---- 158 (189)
T 1z06_A 87 VQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSAIQVP----TDLAQKFADTHS---- 158 (189)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT----
T ss_pred hHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccceeC----HHHHHHHHHHcC----
Confidence 8888999999999999987543322 334444433 378999999999995432111 112223333333
Q ss_pred CCCccEEEcccccC---ccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 211 QLDFPVLYASAKEG---WASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g---~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++| . |++++++.|.+.++
T Consensus 159 ---~~~~~~Sa~~~~~~~--------------~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 159 ---MPLFETSAKNPNDND--------------HVEAIFMTLAHKLK 187 (189)
T ss_dssp ---CCEEECCSSSGGGGS--------------CHHHHHHHHC----
T ss_pred ---CEEEEEeCCcCCccc--------------CHHHHHHHHHHHHh
Confidence 46999999999 6 99999999988765
No 95
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.76 E-value=3.2e-18 Score=160.65 Aligned_cols=157 Identities=22% Similarity=0.192 Sum_probs=107.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|++|+|||||+++|+..........+. + +.......+......++||||||+.+|......+
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~----------~-~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 71 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTI----------E-DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLY 71 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC----------C-EEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCc----------c-eeEEEEEEECCEEEEEEEEECCCchhhHHHHHHH
Confidence 3589999999999999999999864322211111 1 1111222222234569999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
++.+|++++|+|+.+....+ ...++..+.+ .+.|+++|+||+|+...+... .++...+....+ +
T Consensus 72 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-------~ 140 (167)
T 1kao_A 72 IKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESEREVS----SSEGRALAEEWG-------C 140 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCSC----HHHHHHHHHHHT-------S
T ss_pred hccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcccccccCC----HHHHHHHHHHhC-------C
Confidence 99999999999998754322 2334444433 378999999999985322111 112222333333 4
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|++++||++|. |++++++.|.+.+
T Consensus 141 ~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 164 (167)
T 1kao_A 141 PFMETSAKSKT--------------MVDELFAEIVRQM 164 (167)
T ss_dssp CEEEECTTCHH--------------HHHHHHHHHHHHH
T ss_pred CEEEecCCCCc--------------CHHHHHHHHHHHH
Confidence 79999999998 9999999998754
No 96
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.76 E-value=5.4e-18 Score=164.95 Aligned_cols=158 Identities=18% Similarity=0.164 Sum_probs=111.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|++|+|||||+++|+...... ...|+......+.+++..+++|||||+.+|......+
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~---------------~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 87 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT---------------LQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDY 87 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCC---------------CCCCCSCEEEEEEETTEEEEEEECCCSGGGTTSGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCc---------------cccCCCCCeEEEEECCEEEEEEECCCCHHHHHHHHHH
Confidence 4589999999999999999999763210 1122233345677788999999999999988877788
Q ss_pred HhhcceEEEEeeCCCCchh-hHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC-----C
Q 006068 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT-----D 209 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~-----~ 209 (662)
++.+|++|+|+|+.++... ....++..+.. .+.|+++|+||+|+..... .+++.+.+...... .
T Consensus 88 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~ 161 (190)
T 1m2o_B 88 FPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVS------EAELRSALGLLNTTGSQRIE 161 (190)
T ss_dssp CTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCCC------HHHHHHHTTCSSCCC---CC
T ss_pred HhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCCCC------HHHHHHHhCCcccccccccc
Confidence 8999999999999886433 33344444433 4789999999999965221 12222322221100 1
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
....++++++||++|. |++++++.|.+++
T Consensus 162 ~~~~~~~~~~Sa~~g~--------------gi~~l~~~l~~~l 190 (190)
T 1m2o_B 162 GQRPVEVFMCSVVMRN--------------GYLEAFQWLSQYI 190 (190)
T ss_dssp SSCCEEEEECBTTTTB--------------SHHHHHHHHHTTC
T ss_pred ccceEEEEEeECCcCC--------------CHHHHHHHHHhhC
Confidence 1234689999999999 9999999998754
No 97
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.76 E-value=1.3e-17 Score=160.79 Aligned_cols=159 Identities=16% Similarity=0.171 Sum_probs=112.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+++|++|+|||||+++|+... ........|. ....+.+++..+++|||||+.+|...+..
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~-----------~~~~~~t~g~----~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 79 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASED-----------ISHITPTQGF----NIKSVQSQGFKLNVWDIGGQRKIRPYWRS 79 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSC-----------CEEEEEETTE----EEEEEEETTEEEEEEECSSCGGGHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCC-----------CCcccCcCCe----EEEEEEECCEEEEEEECCCCHHHHHHHHH
Confidence 46799999999999999999997641 1111122232 23456677899999999999999998999
Q ss_pred HHhhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+|++++|+|+.+....+ ...++..+.. .+.|+++|+||+|+...... .++ .+.+..... ....
T Consensus 80 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~--~~~----~~~~~~~~~--~~~~ 151 (181)
T 1fzq_A 80 YFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPA--SEI----AEGLNLHTI--RDRV 151 (181)
T ss_dssp HHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCH--HHH----HHHTTGGGC--CSSC
T ss_pred HhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCCCH--HHH----HHHhCchhc--cCCc
Confidence 999999999999998754332 3344444432 47899999999999754321 122 121111011 1124
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++++||++|. |+++++++|.+.+..
T Consensus 152 ~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 152 WQIQSCSALTGE--------------GVQDGMNWVCKNVNA 178 (181)
T ss_dssp EEEEECCTTTCT--------------THHHHHHHHHHTC--
T ss_pred eEEEEccCCCCC--------------CHHHHHHHHHHHHHh
Confidence 689999999999 999999999988754
No 98
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.76 E-value=1.1e-18 Score=171.93 Aligned_cols=161 Identities=15% Similarity=0.103 Sum_probs=111.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe--cCeeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW--RENELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~--~~~~iniIDTPGh~dF~~e 135 (662)
.+..+|+++|+.|+|||||+++|+..........++ .......+.+ ..+.++||||||+.+|...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~-------------~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~ 94 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV-------------FDNYSANVMVDGKPVNLGLWDTAGLEDYDRL 94 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCS-------------EEEEEEEEECC-CEEEEEEEEECCSGGGTTT
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCee-------------cceeEEEEEECCEEEEEEEEECCCchhhHHH
Confidence 346799999999999999999999764432222211 1111222233 3456779999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHH
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLF 202 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~ 202 (662)
...+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+..... ..... .++...+.
T Consensus 95 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 173 (204)
T 4gzl_A 95 RPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD-TIEKLKEKKLTPITYPQGLAMA 173 (204)
T ss_dssp GGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH-HHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh-hhhhhhccccccccHHHHHHHH
Confidence 88899999999999999886555544 355555555 899999999999865322 11111 11223333
Q ss_pred HhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
..++. .|++++||++|. |++++++.|.+.+
T Consensus 174 ~~~~~------~~~~~~SA~~g~--------------gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 174 KEIGA------VKYLECSALTQR--------------GLKTVFDEAIRAV 203 (204)
T ss_dssp HHTTC------SEEEECCTTTCT--------------THHHHHHHHHHTT
T ss_pred HhcCC------cEEEEeeCCCCC--------------CHHHHHHHHHHHh
Confidence 34433 469999999999 9999999998754
No 99
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.76 E-value=4.3e-18 Score=166.19 Aligned_cols=167 Identities=15% Similarity=0.189 Sum_probs=109.6
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE---ecCeeEEEEeCCCCccc
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS---WRENELNMVDTPGHADF 132 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~---~~~~~iniIDTPGh~dF 132 (662)
..++..+|+++|..|+|||||+++|.+... .....+.+.......+. .....++||||||+.+|
T Consensus 16 ~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~ 82 (196)
T 3llu_A 16 FQGSKPRILLMGLRRSGKSSIQKVVFHKMS-------------PNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF 82 (196)
T ss_dssp ----CCEEEEEESTTSSHHHHHHHHHSCCC-------------GGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT
T ss_pred ccCcceEEEEECCCCCCHHHHHHHHHhcCC-------------CcceeeeccccceeeeeccCCCeeEEEEEECCCCHHH
Confidence 344577999999999999999998765311 01122333333333333 34589999999999999
Q ss_pred hHHH---HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH-----cCCCcEEEeccCCCCCCCH--HHHHHHHHHHHHHH
Q 006068 133 GGEV---ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSE--ERCDEVESLVFDLF 202 (662)
Q Consensus 133 ~~ev---~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~--~~~~ei~~~v~~l~ 202 (662)
.... ..+++.+|++|+|+|+.+........+...+.+ .++|+++|+||+|+...+. ....++..+..+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~ 162 (196)
T 3llu_A 83 FDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDL 162 (196)
T ss_dssp TCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHH
Confidence 8777 789999999999999998744443444444333 2789999999999854211 11122222222223
Q ss_pred HhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
..... +...++++++||++ . |++++|+.|++.+
T Consensus 163 ~~~~~--~~~~~~~~e~Sa~~-~--------------~v~~~f~~l~~~l 195 (196)
T 3llu_A 163 ADAGL--EKLHLSFYLTSIYD-H--------------SIFEAFSKVVQKL 195 (196)
T ss_dssp HHTTC--TTSCEEEEEECTTS-T--------------HHHHHHHHHHHHT
T ss_pred HHhhh--hcCCcceEEEEech-h--------------hHHHHHHHHHHHh
Confidence 32221 12346899999999 8 9999999998764
No 100
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.76 E-value=7.9e-18 Score=166.25 Aligned_cols=168 Identities=23% Similarity=0.246 Sum_probs=105.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec---CeeEEEEeCCCCccchH-
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGG- 134 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~---~~~iniIDTPGh~dF~~- 134 (662)
+..+|+++|++|+|||||+++|+........ .|+......+.++ +..++||||||+.+|..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 70 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---------------TSITDSSAIYKVNNNRGNSLTLIDLPGHESLRFQ 70 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBC---------------CCCSCEEEEEECSSTTCCEEEEEECCCCHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc---------------CCcceeeEEEEecCCCccEEEEEECCCChhHHHH
Confidence 4579999999999999999999987432111 1111222235555 67899999999999987
Q ss_pred HHHHHHhhcceEEEEeeCCCCchhh---HHHHHHHHH------HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH--
Q 006068 135 EVERVVGMVEGAILVVDAGEGPLAQ---TKFVLAKAL------KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFA-- 203 (662)
Q Consensus 135 ev~~~l~~aD~aIlVVDa~~G~~~q---t~~~l~~~~------~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~-- 203 (662)
.+..+++.+|++|+|+|+.+ ...+ ...+|.... ..++|+++|+||+|+..... ..++.+.+.+.+.
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~l~~~l~~~ 147 (214)
T 2fh5_B 71 LLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS--AKLIQQQLEKELNTL 147 (214)
T ss_dssp HHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCC--HHHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCccc--HHHHHHHHHHHHHHH
Confidence 67778999999999999976 2222 223333322 23689999999999975432 1223333332222
Q ss_pred -----------------h--cC-----CCCcCC--CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 204 -----------------N--LG-----ATDEQL--DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 204 -----------------~--~g-----~~~~~~--~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
. ++ +..+.+ .++++++||++|.+ .....|+++++++|.+.+
T Consensus 148 ~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~--------~~~~~gv~~lf~~l~~~~ 214 (214)
T 2fh5_B 148 RVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRG--------DTGSADIQDLEKWLAKIA 214 (214)
T ss_dssp HHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC---------------CCBCHHHHHHHHHHC
T ss_pred hccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCc--------cccccChHHHHHHHHHhC
Confidence 0 11 001112 57899999999910 000119999999997653
No 101
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.76 E-value=4.3e-18 Score=160.20 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=108.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|++|+|||||+++|+..........+. +... .....+......++||||||+.+|......+
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~ 71 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI----------EDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLY 71 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCS----------EEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCc----------cceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHH
Confidence 3589999999999999999999864322211111 1111 1112222335689999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
++.+|++++|+|+.+....+ ...++..+.. .++|+++|+||+|+.+.+... .+++..+...++ .+
T Consensus 72 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------~~ 141 (167)
T 1c1y_A 72 MKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVG----KEQGQNLARQWC------NC 141 (167)
T ss_dssp HHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT------SC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECccccccccCC----HHHHHHHHHHcc------CC
Confidence 99999999999988743222 2334444443 378999999999995422111 122223333321 35
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|++++||++|. |++++++.|.+.+
T Consensus 142 ~~~~~Sa~~~~--------------gi~~l~~~l~~~i 165 (167)
T 1c1y_A 142 AFLESSAKSKI--------------NVNEIFYDLVRQI 165 (167)
T ss_dssp EEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred cEEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 79999999998 9999999998765
No 102
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.76 E-value=5e-18 Score=163.30 Aligned_cols=155 Identities=17% Similarity=0.209 Sum_probs=105.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+++|++|+|||||+++|+..........+. .......+.++ .+.++||||||+.+|.....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~-------------~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 70 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTI-------------EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRD 70 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTC-------------CEEEEEEEEETTEEEEEEEEECCCC---CTTHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCc-------------hheEEEEEEECCcEEEEEEEECCCcHHHHHHHH
Confidence 4689999999999999999999764322221111 11112223333 35688899999999999999
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.+++.+|++++|+|+.+....+. ..++..+.. .++|+++|+||+|+...... .+.+..+...++
T Consensus 71 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~-----~~~~~~~~~~~~------ 139 (189)
T 4dsu_A 71 QYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVD-----TKQAQDLARSYG------ 139 (189)
T ss_dssp HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSSCSSC-----HHHHHHHHHHHT------
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcccccC-----HHHHHHHHHHcC------
Confidence 99999999999999987543333 334444444 37899999999999643211 112222333333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |+++++++|.+.+.
T Consensus 140 -~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~ 165 (189)
T 4dsu_A 140 -IPFIETSAKTRQ--------------GVDDAFYTLVREIR 165 (189)
T ss_dssp -CCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred -CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 469999999998 99999999988764
No 103
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.76 E-value=2.8e-18 Score=168.85 Aligned_cols=158 Identities=20% Similarity=0.188 Sum_probs=111.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
....+|+|+|++|+|||||+++|+...... +....++.......+.+++ ..+.||||||+.+|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 85 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNP------------SFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTI 85 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHCCCCC------------SSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCc------------ccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHH
Confidence 346799999999999999999999763221 1222333334444555555 68999999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
+..+++.+|++|+|+|+.+....+ ...++..+... ++|+++|+||+|+..... . .++...+...++
T Consensus 86 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~-~----~~~~~~~~~~~~----- 155 (213)
T 3cph_A 86 TTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETRVV-T----ADQGEALAKELG----- 155 (213)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSSCCS-C----HHHHHHHHHHHT-----
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccc-C----HHHHHHHHHHcC-----
Confidence 889999999999999998754332 23455555443 789999999999843211 1 112222333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |+++++++|.+.++
T Consensus 156 --~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 181 (213)
T 3cph_A 156 --IPFIESSAKNDD--------------NVNEIFFTLAKLIQ 181 (213)
T ss_dssp --CCEEECBTTTTB--------------SSHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 469999999998 99999999987664
No 104
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.76 E-value=1.9e-18 Score=164.84 Aligned_cols=158 Identities=18% Similarity=0.191 Sum_probs=108.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
.+..+|+++|+.|+|||||+++|+..........+. +.++. ..+.+++ ..++||||||+.+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~----------~~~~~---~~~~~~~~~~~~~~~Dt~G~~~~~~~ 73 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTI----------EDSYT---KICSVDGIPARLDILDTAGQEEFGAM 73 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTC----------CEEEE---EEEEETTEEEEEEEEECCCTTTTSCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCc----------CceEE---EEEEECCEEEEEEEEECCCchhhHHH
Confidence 356799999999999999999999874322211111 11111 2334443 68899999999999988
Q ss_pred HHHHHhhcceEEEEeeCCCCchhh-HHHHHHHHH----HcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKAL----KYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~----~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
...+++.+|++++|+|+.+..... ...++..+. ..++|+++|+||+|+....... .++...+....
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~----- 144 (181)
T 2fn4_A 74 REQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVP----RSEASAFGASH----- 144 (181)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCSC----HHHHHHHHHHT-----
T ss_pred HHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccC----HHHHHHHHHHc-----
Confidence 889999999999999998753322 223343332 2478999999999985422111 11122222222
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.++++++||++|. |++++++.|.+.+.
T Consensus 145 --~~~~~~~Sa~~~~--------------gv~~l~~~l~~~~~ 171 (181)
T 2fn4_A 145 --HVAYFEASAKLRL--------------NVDEAFEQLVRAVR 171 (181)
T ss_dssp --TCEEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred --CCeEEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 2579999999998 99999999987764
No 105
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.76 E-value=9.9e-19 Score=167.63 Aligned_cols=158 Identities=20% Similarity=0.109 Sum_probs=107.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev 136 (662)
+..+|+|+|++|+|||||+++|+.......... ..+.+. ...+.+++ +.++||||||+.+|....
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~----------t~~~~~---~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 71 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDP----------TIENTF---TKLITVNGQEYHLQLVDTAGQDEYSIFP 71 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCT----------TCCEEE---EEEEEETTEEEEEEEEECCCCCTTCCCC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCC----------CccccE---EEEEEECCEEEEEEEEeCCCchhhhHHH
Confidence 457999999999999999999997643222111 112222 22233344 678999999999997777
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHH-HHHHHH----HHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKA----LKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~----~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+++.+|++++|+|+.+....+.. .++..+ ...++|+++|+||+|+...+... .++...+...++
T Consensus 72 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~----- 142 (181)
T 3t5g_A 72 QTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVIS----YEEGKALAESWN----- 142 (181)
T ss_dssp GGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTTCCSC----HHHHHHHHHHTT-----
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcceec----HHHHHHHHHHhC-----
Confidence 7888999999999999874333222 233333 23478999999999985433211 122333334433
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+|++++||++|. |++++++.|.+.+..
T Consensus 143 --~~~~~~Sa~~~~--------------~v~~l~~~l~~~~~~ 169 (181)
T 3t5g_A 143 --AAFLESSAKENQ--------------TAVDVFRRIILEAEK 169 (181)
T ss_dssp --CEEEECCTTSHH--------------HHHHHHHHHHHHHHT
T ss_pred --CcEEEEecCCCC--------------CHHHHHHHHHHHHHH
Confidence 479999999998 999999999887643
No 106
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.76 E-value=3.1e-18 Score=161.45 Aligned_cols=156 Identities=15% Similarity=0.088 Sum_probs=92.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|++|+|||||+++|+..... ......|.+.. ....+......+++|||||+.+|......+
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~-----------~~~~~~~~~~~-~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~ 69 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDG-----------PEAEAAGHTYD-RSIVVDGEEASLMVYDIWEQDGGRWLPGHC 69 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC---------------------CEEE-EEEEETTEEEEEEEEECC------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCcccc-----------CCCCccccceE-EEEEECCEEEEEEEEECCCCccchhhhhhh
Confidence 468999999999999999999743211 11112233332 222333345689999999999999888899
Q ss_pred HhhcceEEEEeeCCCCchh-hHHHHHHHHHHc----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
++.+|++++|+|+.+.... ....++..+... ++|+++|+||+|+...+.....+ ...+....+ +
T Consensus 70 ~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~----~~~~~~~~~-------~ 138 (166)
T 3q72_A 70 MAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDE----GRACAVVFD-------C 138 (166)
T ss_dssp ---CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSSCCSCHHH----HHHHHHHTT-------C
T ss_pred hhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccccccCHHH----HHHHHHHhC-------C
Confidence 9999999999998865332 233455555543 78999999999996533211111 122222222 5
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|++++||++|. |++++++.|.+.+
T Consensus 139 ~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 162 (166)
T 3q72_A 139 KFIETSAALHH--------------NVQALFEGVVRQI 162 (166)
T ss_dssp EEEECBGGGTB--------------SHHHHHHHHHHHH
T ss_pred cEEEeccCCCC--------------CHHHHHHHHHHHH
Confidence 79999999998 9999999998754
No 107
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.76 E-value=2.7e-18 Score=164.83 Aligned_cols=165 Identities=16% Similarity=0.107 Sum_probs=112.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|++|+|||||+++|+..........++.+ +. .....+......++||||||+.+|......+
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~----------~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 73 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFD----------NY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLS 73 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCC----------EE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGG
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccc----------ee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHh
Confidence 468999999999999999999976433222222111 11 1112222334678899999999998887788
Q ss_pred HhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHhcC
Q 006068 140 VGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLG 206 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~~g 206 (662)
++.+|++|+|+|+.++...+.. .++..+... ++|+++|+||+|+..... ..... .++...+...++
T Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 152 (186)
T 1mh1_A 74 YPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD-TIEKLKEKKLTPITYPQGLAMAKEIG 152 (186)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHH-HHHHHHHTTCCCCCHHHHHHHHHHTT
T ss_pred ccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccch-hhhhhcccccccCCHHHHHHHHHhcC
Confidence 8999999999999876544443 345555554 899999999999854321 11111 112223333333
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
. .|++++||++|. |++++++.|.+.+..+.
T Consensus 153 ~------~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~~ 182 (186)
T 1mh1_A 153 A------VKYLECSALTQR--------------GLKTVFDEAIRAVLCPP 182 (186)
T ss_dssp C------SEEEECCTTTCT--------------THHHHHHHHHHHHSCCC
T ss_pred C------cEEEEecCCCcc--------------CHHHHHHHHHHHHhccc
Confidence 2 379999999998 99999999999887654
No 108
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.76 E-value=1.5e-18 Score=171.80 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=109.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec------------CeeEEEEe
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR------------ENELNMVD 125 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~------------~~~iniID 125 (662)
++..+|+|+|+.|+|||||+++|+..... .+....+++......+.+. ...++|||
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~------------~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D 90 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNKFN------------PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWD 90 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSCCC------------CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEE
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCCCC------------cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEE
Confidence 45689999999999999999999975321 1111122222222233333 57899999
Q ss_pred CCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHH-HHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHH
Q 006068 126 TPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKF-VLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFD 200 (662)
Q Consensus 126 TPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~-~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~ 200 (662)
|||+.+|...+..+++.+|++|+|+|+.+....+... ++..+.. .++|+++|+||+|+....... .+++..
T Consensus 91 t~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v~----~~~~~~ 166 (217)
T 2f7s_A 91 TAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVN----ERQARE 166 (217)
T ss_dssp EESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCSC----HHHHHH
T ss_pred CCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccccccC----HHHHHH
Confidence 9999999999999999999999999998754444333 3332322 468899999999985422111 122233
Q ss_pred HHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 201 LFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 201 l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+....+ ++++++||++|. |+++++++|.+.+
T Consensus 167 ~~~~~~-------~~~~~~Sa~~g~--------------gi~~l~~~l~~~i 197 (217)
T 2f7s_A 167 LADKYG-------IPYFETSAATGQ--------------NVEKAVETLLDLI 197 (217)
T ss_dssp HHHHTT-------CCEEEEBTTTTB--------------THHHHHHHHHHHH
T ss_pred HHHHCC-------CcEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 333333 469999999998 9999999988765
No 109
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.76 E-value=2e-18 Score=169.15 Aligned_cols=162 Identities=20% Similarity=0.153 Sum_probs=109.6
Q ss_pred CCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHH
Q 006068 57 PGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 57 ~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev 136 (662)
..+..+|+|+|+.|+|||||+++|+..........+ .+.+. .....+....+.++||||||+.+|....
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t----------~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 89 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPT----------VENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILP 89 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCC----------SEEEE-EEEEC----CEEEEEEEECCCCTTCCCC
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCc----------cceEE-EEEEEECCEEEEEEEEECCCccchHHHH
Confidence 345789999999999999999999987432211111 12222 3333344567889999999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+...+..... +...+....+
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~----~~~~~~~~~~----- 160 (201)
T 3oes_A 90 YSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPEREVQAV----EGKKLAESWG----- 160 (201)
T ss_dssp GGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGGCCSCHH----HHHHHHHHHT-----
T ss_pred HHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccccccCHH----HHHHHHHHhC-----
Confidence 8889999999999999875443333 33343332 37899999999998543221111 1222333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+|++++||++|. |++++++.|.+.+..
T Consensus 161 --~~~~~~Sa~~~~--------------~v~~l~~~l~~~i~~ 187 (201)
T 3oes_A 161 --ATFMESSARENQ--------------LTQGIFTKVIQEIAR 187 (201)
T ss_dssp --CEEEECCTTCHH--------------HHHHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC--------------CHHHHHHHHHHHHHh
Confidence 479999999998 999999999887643
No 110
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.76 E-value=2.4e-18 Score=165.92 Aligned_cols=160 Identities=18% Similarity=0.246 Sum_probs=113.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
.+..+|+++|++|+|||||+++|+... .... ..|+......+.+++..++||||||+.+|...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~--------------~~t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~ 80 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTI--------------SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 80 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSC--------------CCCSSEEEEEEEETTEEEEEEEECCSHHHHTTGG
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcc--------------cccCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 356799999999999999999998753 1111 1122223345667889999999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 138 RVVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.+++.+|++|+|+|+.+... .....++..+.. .+.|+++|+||+|+..... ..+ +.+.+..... ...
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~----~~~~~~~~~~--~~~ 152 (186)
T 1ksh_A 81 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGALS--CNA----IQEALELDSI--RSH 152 (186)
T ss_dssp GGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC--HHH----HHHHTTGGGC--CSS
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCCC--HHH----HHHHhChhhc--cCC
Confidence 88999999999999987643 333345555543 3789999999999965422 112 2222211001 123
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.+|++++||++|. |++++++.|.+.++.
T Consensus 153 ~~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~ 180 (186)
T 1ksh_A 153 HWRIQGCSAVTGE--------------DLLPGIDWLLDDISS 180 (186)
T ss_dssp CEEEEECCTTTCT--------------THHHHHHHHHHHHHT
T ss_pred ceEEEEeeCCCCC--------------CHHHHHHHHHHHHHh
Confidence 4689999999998 999999999887653
No 111
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.76 E-value=2.4e-18 Score=164.75 Aligned_cols=151 Identities=17% Similarity=0.180 Sum_probs=109.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH-----
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE----- 135 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e----- 135 (662)
.+|+|+|++|+|||||+++|+..... ......++|.+.....+.+++..+.+|||||+.++...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~~~-----------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~ 73 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGREAA-----------IVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREASDEVERIG 73 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCS-----------CCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcc-----------eeeCCCCceeceeeEEEEECCeEEEEEECCCcccchhHHHHHH
Confidence 58999999999999999999875321 11223455555555667778889999999999775322
Q ss_pred ---HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 136 ---VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 136 ---v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
...+++.+|++|+|+|+.+....+...++..+.+. ++|+++|+||+|+.+.... +.
T Consensus 74 ~~~~~~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~------------~~------ 135 (172)
T 2gj8_A 74 IERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------------MS------ 135 (172)
T ss_dssp HHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------------EE------
T ss_pred HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchhh------------hh------
Confidence 22467899999999999887665566666666554 6899999999998432110 00
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
....++++++||++|. |+++|++.|.+.+..
T Consensus 136 ~~~~~~~~~~SA~~g~--------------gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 136 EVNGHALIRLSARTGE--------------GVDVLRNHLKQSMGF 166 (172)
T ss_dssp EETTEEEEECCTTTCT--------------THHHHHHHHHHHC--
T ss_pred hccCCceEEEeCCCCC--------------CHHHHHHHHHHHhhh
Confidence 0113579999999998 999999999988754
No 112
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.76 E-value=1.6e-18 Score=165.56 Aligned_cols=160 Identities=20% Similarity=0.214 Sum_probs=99.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec---CeeEEEEeCCCCccchH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR---ENELNMVDTPGHADFGG 134 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~---~~~iniIDTPGh~dF~~ 134 (662)
++..+|+++|+.|+|||||+++|+........ ...++.......+.++ ...++||||||+.+|..
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~ 73 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQY------------KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQS 73 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---------------CCCSCEEEEECCSSSCCEEEEEECCC-------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCccc------------CCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhh
Confidence 35689999999999999999999986432111 1122222233334443 46899999999999988
Q ss_pred HHHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH-------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 135 EVERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 135 ev~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~-------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
....+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+....... ..+++..+.....
T Consensus 74 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~v---~~~~~~~~~~~~~ 150 (182)
T 1ky3_A 74 LGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIV---SEKSAQELAKSLG 150 (182)
T ss_dssp ---CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCCS---CHHHHHHHHHHTT
T ss_pred hhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccccccC---CHHHHHHHHHhcC
Confidence 888889999999999999876543333 33333333 578999999999984321100 0112222222111
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.+|++++||++|. |++++++.|.+.+
T Consensus 151 ------~~~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 176 (182)
T 1ky3_A 151 ------DIPLFLTSAKNAI--------------NVDTAFEEIARSA 176 (182)
T ss_dssp ------SCCEEEEBTTTTB--------------SHHHHHHHHHHHH
T ss_pred ------CCeEEEEecCCCC--------------CHHHHHHHHHHHH
Confidence 3579999999998 9999999998754
No 113
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.75 E-value=1.2e-18 Score=170.97 Aligned_cols=159 Identities=19% Similarity=0.137 Sum_probs=107.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|+.|+|||||+++|+...... +....++.......+.+++ ..++||||||+.+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~------------~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~ 90 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQ------------DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSV 90 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC------------------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCCCCc------------cCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHH
Confidence 456899999999999999999998663211 1112222222333444444 78999999999998888
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+........ .+...+....+
T Consensus 91 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v~~----~~~~~~~~~~~----- 161 (200)
T 2o52_A 91 TRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF----LEASRFAQENE----- 161 (200)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGGCCSCH----HHHHHHHHHTT-----
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccccccCH----HHHHHHHHHcC-----
Confidence 8889999999999999987544333 334444443 3789999999999853221111 12223333332
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++++.|.+.+.
T Consensus 162 --~~~~~~SA~~g~--------------gi~~l~~~l~~~i~ 187 (200)
T 2o52_A 162 --LMFLETSALTGE--------------NVEEAFLKCARTIL 187 (200)
T ss_dssp --CEEEEECTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 579999999998 99999999887653
No 114
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.75 E-value=1.4e-18 Score=164.29 Aligned_cols=158 Identities=18% Similarity=0.081 Sum_probs=103.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev 136 (662)
+..+|+++|++|+|||||+++|+........ ...++.......+.++ ...+.||||||+.+|....
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~ 72 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKH------------ITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALG 72 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHCCCCSSC------------CCCCSCEEEEEEEESSSCEEEEEEEECCCC-------
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCcCC------------CCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhH
Confidence 3579999999999999999999976432111 1112222222233333 4578999999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
..+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+....... .+++..+....+
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~------ 142 (170)
T 1z08_A 73 PIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKERHVS----IQEAESYAESVG------ 142 (170)
T ss_dssp CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGGCCSC----HHHHHHHHHHTT------
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccccC----HHHHHHHHHHcC------
Confidence 8888999999999999875443333 34444433 478999999999985422111 122233333333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++++||++|. |++++++.|.+.++
T Consensus 143 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 168 (170)
T 1z08_A 143 -AKHYHTSAKQNK--------------GIEELFLDLCKRMI 168 (170)
T ss_dssp -CEEEEEBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred -CeEEEecCCCCC--------------CHHHHHHHHHHHHh
Confidence 468999999998 99999999987653
No 115
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.75 E-value=3.7e-18 Score=164.70 Aligned_cols=156 Identities=22% Similarity=0.268 Sum_probs=116.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------ 133 (662)
..+|+++|+.|+|||||+++|+... ...+...++|+......+.+++..++||||||+.+|.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~~------------~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~ 74 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGEN------------VYIGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANSIDE 74 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTTC------------EEEEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSSSHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC------------ccccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccccHHH
Confidence 4699999999999999999998651 1223445777777777888889999999999999884
Q ss_pred HHHHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 134 GEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 134 ~ev~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
.....+++ .+|++++|+|+.+ ......++..+...+.|+++|+||+|+..... +.....++...++
T Consensus 75 ~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----~~~~~~~~~~~~~----- 142 (188)
T 2wjg_A 75 IIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSLG-----IEIDVDKLEKILG----- 142 (188)
T ss_dssp HHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT-----
T ss_pred HHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhcccccc-----chHHHHHHHHHhC-----
Confidence 23344454 4999999999875 34455677777778999999999999742110 0012222233333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
++++++||++|. |++++++.|.+.++..
T Consensus 143 --~~~~~~Sa~~~~--------------~v~~l~~~i~~~~~~~ 170 (188)
T 2wjg_A 143 --VKVVPLSAAKKM--------------GIEELKKAISIAVKDK 170 (188)
T ss_dssp --SCEEECBGGGTB--------------SHHHHHHHHHHHHTTC
T ss_pred --CCeEEEEecCCC--------------CHHHHHHHHHHHHHhc
Confidence 469999999998 9999999999887653
No 116
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.75 E-value=1.5e-17 Score=155.79 Aligned_cols=155 Identities=18% Similarity=0.189 Sum_probs=107.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l 140 (662)
.+|+++|+.|+|||||+++|+..........+. +.. ......+....+.+++|||||+.+|......++
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~----------~~~-~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~ 72 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHFVDECDPTI----------EDS-YRKQVVIDGETCLLDILDTAGQEEYSAMRDQYM 72 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTC----------CEE-EEEEEEETTEEEEEEEEECCCCSSCCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCccccCCcc----------ceE-EEEEEEECCEEEEEEEEECCCchhhhHHHHHhh
Confidence 589999999999999999999764322211111 111 111112222346789999999999999999999
Q ss_pred hhcceEEEEeeCCCCchhh-HHHHHHHHHHc----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 141 GMVEGAILVVDAGEGPLAQ-TKFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 141 ~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
+.+|++++|+|+.+....+ ...++..+... ++|+++|+||+|+..... . .+++.++....+ +|
T Consensus 73 ~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~~-~----~~~~~~~~~~~~-------~~ 140 (166)
T 2ce2_X 73 RTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAARTV-E----SRQAQDLARSYG-------IP 140 (166)
T ss_dssp HHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS-C----HHHHHHHHHHHT-------CC
T ss_pred ccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhccc-C----HHHHHHHHHHcC-------Ce
Confidence 9999999999988654322 23444444443 789999999999865221 1 122233333333 47
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++||++|. |++++++.|.+.+
T Consensus 141 ~~~~Sa~~~~--------------gi~~l~~~l~~~~ 163 (166)
T 2ce2_X 141 YIETSAKTRQ--------------GVEDAFYTLVREI 163 (166)
T ss_dssp EEEECTTTCT--------------THHHHHHHHHHHH
T ss_pred EEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 9999999998 9999999998765
No 117
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.75 E-value=3.3e-18 Score=167.60 Aligned_cols=159 Identities=19% Similarity=0.134 Sum_probs=109.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|++|+|||||+++|+....... ....++.......+.++ .+.++||||||+.+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ------------YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSL 73 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS------------CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC------------CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHh
Confidence 3567999999999999999999998743211 11222233333334443 468999999999999887
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH-------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK-------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGA 207 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~-------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~ 207 (662)
...+++.+|++|+|+|+.++...+.. .++..+.. .++|+++|+||+|+..... . .+++..+....
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~----~~~~~~~~~~~-- 146 (207)
T 1vg8_A 74 GVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQV-A----TKRAQAWCYSK-- 146 (207)
T ss_dssp CCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCCCS-C----HHHHHHHHHHT--
T ss_pred HHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccccc-C----HHHHHHHHHhc--
Confidence 77889999999999999876543333 33333332 4789999999999963221 1 11222222211
Q ss_pred CCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 208 TDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 208 ~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
..+|++++||++|. |+++++++|.+.+.
T Consensus 147 ----~~~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~ 174 (207)
T 1vg8_A 147 ----NNIPYFETSAKEAI--------------NVEQAFQTIARNAL 174 (207)
T ss_dssp ----TSCCEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred ----CCceEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 13579999999998 99999999987764
No 118
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.75 E-value=4.1e-18 Score=167.31 Aligned_cols=159 Identities=18% Similarity=0.166 Sum_probs=111.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|++|+|||||+++|+....... ....++.......+.+++ +.++||||||+.+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~ 73 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTND------------YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTI 73 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCCCCTT------------CCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCC------------CCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHH
Confidence 3467999999999999999999998643211 112223233333444444 58999999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+++.+|++|+|+|+.+....+.. .++..+.. .++|+++|+||+|+...+.... ++...+....+
T Consensus 74 ~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~----- 144 (206)
T 2bcg_Y 74 TSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKRVVEY----DVAKEFADANK----- 144 (206)
T ss_dssp CGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTTCCSCH----HHHHHHHHHTT-----
T ss_pred HHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccccccCH----HHHHHHHHHcC-----
Confidence 88889999999999999876544433 34444444 3588999999999965322111 12222333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |+++++++|.+.+.
T Consensus 145 --~~~~~~Sa~~g~--------------gi~~l~~~l~~~i~ 170 (206)
T 2bcg_Y 145 --MPFLETSALDST--------------NVEDAFLTMARQIK 170 (206)
T ss_dssp --CCEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred --CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 479999999998 99999999987764
No 119
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.75 E-value=4.3e-18 Score=166.83 Aligned_cols=158 Identities=16% Similarity=0.211 Sum_probs=106.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|++|+|||||+++|...... .. ..|+......+.+++..+++|||||+.+|...+..+
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~--------~~-------~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 89 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLG--------QH-------VPTLHPTSEELTIAGMTFTTFDLGGHIQARRVWKNY 89 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC---------------------CCCCCSCEEEEETTEEEEEEEECC----CCGGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCC--------cc-------CCCCCceeEEEEECCEEEEEEECCCcHhhHHHHHHH
Confidence 468999999999999999999754211 00 112222345667788999999999999998877888
Q ss_pred HhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC--------
Q 006068 140 VGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG-------- 206 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g-------- 206 (662)
++.+|++|+|+|+.+... .....++..+.+ .++|+++|+||+|+..... .+++.+.+....
T Consensus 90 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~------~~~~~~~~~~~~~~~~~~~~ 163 (198)
T 1f6b_A 90 LPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAIS------EERLREMFGLYGQTTGKGSV 163 (198)
T ss_dssp GGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCCC------HHHHHHHHTCTTTCCCSSCC
T ss_pred HhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCccccCC------HHHHHHHhCccccccccccc
Confidence 999999999999987643 333445554443 4789999999999965211 122223332211
Q ss_pred -CCC-cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 207 -ATD-EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 207 -~~~-~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
... ....++++++||++|. |+++++++|.+.+
T Consensus 164 ~~~~~~~~~~~~~~~SA~~g~--------------gv~~l~~~l~~~l 197 (198)
T 1f6b_A 164 SLKELNARPLEVFMCSVLKRQ--------------GYGEGFRWMAQYI 197 (198)
T ss_dssp CTTTCCSCCEEEEECBTTTTB--------------SHHHHHHHHHTTC
T ss_pred ccccccCceEEEEEEECCCCC--------------CHHHHHHHHHHhc
Confidence 100 0134689999999999 9999999998764
No 120
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.75 E-value=5.7e-18 Score=168.97 Aligned_cols=160 Identities=21% Similarity=0.189 Sum_probs=110.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+|+|..++|||||+++|+...+...+..++ |.....+...+....++++||||+|+.+|......+
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Ti----------g~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~ 82 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATI----------GIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSY 82 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSCCC--------------------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHH
T ss_pred cEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCcc----------ceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHH
Confidence 4689999999999999999999875433222222 222223333333344788999999999999999999
Q ss_pred HhhcceEEEEeeCCCCchh-hHHHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 140 VGMVEGAILVVDAGEGPLA-QTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
++.+|++++|+|..+.... ....||..+.. .++|+|+|.||+|+...+... .++...+...++ ++
T Consensus 83 ~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V~----~~e~~~~a~~~~-------~~ 151 (216)
T 4dkx_A 83 IRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADKRQVS----IEEGERKAKELN-------VM 151 (216)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGGCCSC----HHHHHHHHHHHT-------CE
T ss_pred hccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhcCccc----HHHHhhHHHHhC-------Ce
Confidence 9999999999998765433 33455555544 367899999999986432211 122333444444 46
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++||++|. |++++|+.|++.++.
T Consensus 152 ~~e~SAktg~--------------nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 152 FIETSAKAGY--------------NVKQLFRRVAAALPG 176 (216)
T ss_dssp EEEEBTTTTB--------------SHHHHHHHHHHHC--
T ss_pred eEEEeCCCCc--------------CHHHHHHHHHHHHHh
Confidence 8999999999 999999999998864
No 121
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.75 E-value=1.2e-18 Score=166.72 Aligned_cols=166 Identities=19% Similarity=0.117 Sum_probs=106.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|++|+|||||+++|+..........++.+.. .....+......++||||||+.+|......
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~-----------~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 75 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNF-----------SANVVVNGATVNLGLWDTAGQEDYNRLRPL 75 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC----------C-----------BCCCC-------CEEECCCC-CTTTTTGGG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeE-----------EEEEEECCEEEEEEEEECCCChhhhhhHHh
Confidence 457999999999999999999997643222212211110 001112223467889999999999888888
Q ss_pred HHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHH------HHHHHHHHHHHhcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCD------EVESLVFDLFANLGAT 208 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~------ei~~~v~~l~~~~g~~ 208 (662)
+++.+|++++|+|+.+....+.. .++..+... ++|+++|+||+|+......... ...++...+...++.
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~- 154 (182)
T 3bwd_D 76 SYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA- 154 (182)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC-
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC-
Confidence 89999999999999875544443 344555443 7899999999998543221000 011223333334442
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
.+++++||++|. |++++++.|.+.+..|
T Consensus 155 -----~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 155 -----PAYIECSSKSQE--------------NVKGVFDAAIRVVLQP 182 (182)
T ss_dssp -----SEEEECCTTTCT--------------THHHHHHHHHHHHSCC
T ss_pred -----CEEEEEECCCCC--------------CHHHHHHHHHHHHhcC
Confidence 369999999998 9999999999877554
No 122
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.5e-17 Score=161.62 Aligned_cols=160 Identities=16% Similarity=0.118 Sum_probs=110.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+|+|++|+|||||+++|+..........++ +.+.. ....+......++||||||+.+|......
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 75 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTI----------EDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRL 75 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCC----------CEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcc----------cccee-EEEEECCEEEEEEEEeCCChHHhHHHHHH
Confidence 45799999999999999999999864322111111 11111 12222333468999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCchhh-HHHHHHHHHH-----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
+++.+|++|+|+|+.+....+ ...++..+.+ .++|+++|+||+|+..... . .++...+...++
T Consensus 76 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~~-~----~~~~~~~~~~~~------ 144 (199)
T 2gf0_A 76 SISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQREV-D----TREAQAVAQEWK------ 144 (199)
T ss_dssp HHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSCSS-C----HHHHHHHHHHHT------
T ss_pred hhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcccc-C----HHHHHHHHHHhC------
Confidence 999999999999998643322 2234444433 3689999999999965221 1 111222233333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
++++++||++|. |+++|+++|.+.+...
T Consensus 145 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 145 -CAFMETSAKMNY--------------NVKELFQELLTLETRR 172 (199)
T ss_dssp -CEEEECBTTTTB--------------SHHHHHHHHHHHCSSS
T ss_pred -CeEEEEecCCCC--------------CHHHHHHHHHHHHhhh
Confidence 469999999998 9999999999988653
No 123
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.75 E-value=1.8e-17 Score=165.97 Aligned_cols=164 Identities=13% Similarity=0.114 Sum_probs=109.7
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc-----
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF----- 132 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF----- 132 (662)
.+..+|+|+|.+|+|||||+++|+.... ......+.|.......+.+++..++||||||+.++
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~ 94 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANV------------DVQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENR 94 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCE------------EEECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC------------ccCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchh
Confidence 3567999999999999999999987521 11223455666666667778899999999999432
Q ss_pred ----hHHHHHHHhhcceEEEEeeCCCCchh---hHHHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHH
Q 006068 133 ----GGEVERVVGMVEGAILVVDAGEGPLA---QTKFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFA 203 (662)
Q Consensus 133 ----~~ev~~~l~~aD~aIlVVDa~~G~~~---qt~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~ 203 (662)
.......+..+|++|+|+|+.+.... ....++..+... ++|+++|+||+|+....... .+..+.+..+..
T Consensus 95 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~ 173 (228)
T 2qu8_A 95 NTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSLS-IDNKLLIKQILD 173 (228)
T ss_dssp CHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CCC-HHHHHHHHHHHH
T ss_pred hhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhhH-HHHHHHHHHHHH
Confidence 12223446778999999999876442 234555666555 89999999999996432110 111222333333
Q ss_pred hcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
..+. .++++++||++|. |++++++.|.+.+.
T Consensus 174 ~~~~-----~~~~~~~SA~~g~--------------gi~~l~~~l~~~i~ 204 (228)
T 2qu8_A 174 NVKN-----PIKFSSFSTLTGV--------------GVEQAKITACELLK 204 (228)
T ss_dssp HCCS-----CEEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred hcCC-----CceEEEEecccCC--------------CHHHHHHHHHHHHH
Confidence 3321 2579999999998 99999999987763
No 124
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.75 E-value=3.5e-18 Score=168.60 Aligned_cols=166 Identities=14% Similarity=0.074 Sum_probs=112.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+|+|++|+|||||+++|+..........++ +... .....+....+.++||||||+.+|......
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 76 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV----------FDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPL 76 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSS----------CCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CG
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcc----------ceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHh
Confidence 45799999999999999999999764322222222 1111 111112223468999999999999888888
Q ss_pred HHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHH-----HHHHHHHHHHhcCCCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDE-----VESLVFDLFANLGATD 209 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~e-----i~~~v~~l~~~~g~~~ 209 (662)
+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+...... ... ..++...+...++.
T Consensus 77 ~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~v~~~~~~~~~~~~~~-- 153 (212)
T 2j0v_A 77 SYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGY-LADHTNVITSTQGEELRKQIGA-- 153 (212)
T ss_dssp GGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHH-HHTCSSCCCHHHHHHHHHHHTC--
T ss_pred hccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccc-cccccCCCCHHHHHHHHHHcCC--
Confidence 99999999999999876544433 355555554 8999999999998543210 000 12233334444443
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
.+++++||++|. |++++++.|.+.+..+.
T Consensus 154 ----~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 154 ----AAYIECSSKTQQ--------------NVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp ----SEEEECCTTTCT--------------THHHHHHHHHHHHHCC-
T ss_pred ----ceEEEccCCCCC--------------CHHHHHHHHHHHHhhhh
Confidence 369999999998 99999999998876554
No 125
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.75 E-value=1.5e-18 Score=191.20 Aligned_cols=154 Identities=23% Similarity=0.353 Sum_probs=112.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc--------cc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA--------DF 132 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~--------dF 132 (662)
++|+|+|++|+|||||+++|++... ...+...|+|.+.....+.|++..++||||||+. .|
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~-----------~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~ 72 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERI-----------SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQI 72 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEEC-----------C-----------CEEEECTTCSSCCEEEC---------CHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc-----------eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHH
Confidence 5899999999999999999986521 1234456899998888999999999999999986 56
Q ss_pred hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 133 GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 133 ~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
...+..+++.+|++|+|+|+.+|....+..+++.+...++|+++|+||+|+..... ++.+ +..+|+.
T Consensus 73 ~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~--------~~~~-~~~lg~~---- 139 (436)
T 2hjg_A 73 RQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRA--------NIYD-FYSLGFG---- 139 (436)
T ss_dssp HHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-------------CCCS-SGGGSSC----
T ss_pred HHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchh--------hHHH-HHHcCCC----
Confidence 67778899999999999999999998888888888888999999999999853211 1111 1233332
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+++++||++|. |+.+|+++|.+.+|.
T Consensus 140 --~~~~iSA~~g~--------------gv~~L~~~i~~~l~~ 165 (436)
T 2hjg_A 140 --EPYPISGTHGL--------------GLGDLLDAVAEHFKN 165 (436)
T ss_dssp --CCEECBTTTTB--------------THHHHHHHHHHTGGG
T ss_pred --CeEEEeCcCCC--------------ChHHHHHHHHHhcCc
Confidence 47999999999 999999999999874
No 126
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.74 E-value=4e-18 Score=174.30 Aligned_cols=169 Identities=16% Similarity=0.129 Sum_probs=117.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---- 134 (662)
...+|+|+|++|+|||||+++|++....... ....++|.......+.|+++.++||||||+.+|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~----------~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~ 90 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESK----------LGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHCEA 90 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCC----------TTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCCHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccC----------CCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCHHH
Confidence 4579999999999999999999976421110 01123666666777889999999999999988742
Q ss_pred -------HHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc-----CCCcEEEec-cCCCCCCCHHHHHHH--HHHHH
Q 006068 135 -------EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-----GLRPILLLN-KVDRPAVSEERCDEV--ESLVF 199 (662)
Q Consensus 135 -------ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~-----~lp~IvviN-KiD~~~~~~~~~~ei--~~~v~ 199 (662)
.+..+++.+|++|+|+|+.. +..++..++..+.+. +.|+|+|+| |+|+.+.+...+..- .+++.
T Consensus 91 ~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~~~~i~~~~~~~~~ 169 (260)
T 2xtp_A 91 LYKEVQRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSLMDYMHDSDNKALS 169 (260)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccHHHHHHhcchHHHH
Confidence 22336678999999999985 777778788887776 678888887 999975443221100 01233
Q ss_pred HHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+++..++.... .+..+++||++|. |+++|++.|.+.++.
T Consensus 170 ~~~~~~~~~~~--~~~~~~~SA~~~~--------------gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 170 KLVAACGGRIC--AFNNRAEGSNQDD--------------QVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHTTTCEE--ECCTTCCHHHHHH--------------HHHHHHHHHHHHHHH
T ss_pred HHHHHhCCeEE--EecCcccccccHH--------------HHHHHHHHHHHHHHh
Confidence 34444432110 0112788999998 999999999888754
No 127
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.74 E-value=2.1e-18 Score=167.81 Aligned_cols=163 Identities=15% Similarity=0.104 Sum_probs=111.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|+.|+|||||+++|+..........++ +.+.. ....+....+.++||||||+.+|......
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~----------~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 90 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTV----------FENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPL 90 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----------EEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCee----------eeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHh
Confidence 45799999999999999999999874322221111 11111 11222223456799999999999988888
Q ss_pred HHhhcceEEEEeeCCCCchhhH--HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDF 214 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~ 214 (662)
+++.+|++|+|+|+.+...... ..++..+... ++|+++|+||+|+...... ....+++..+...+++.
T Consensus 91 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~------ 162 (194)
T 3reg_A 91 SYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSD--DVTKQEGDDLCQKLGCV------ 162 (194)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTT--CCCHHHHHHHHHHHTCS------
T ss_pred hccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCC--cccHHHHHHHHHhcCCC------
Confidence 9999999999999988654444 2344444444 6899999999998642110 00122333444444432
Q ss_pred cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 215 PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 215 Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+++++||++|. |++++++.|.+.+..
T Consensus 163 ~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~ 188 (194)
T 3reg_A 163 AYIEASSVAKI--------------GLNEVFEKSVDCIFS 188 (194)
T ss_dssp CEEECBTTTTB--------------SHHHHHHHHHHHHHC
T ss_pred EEEEeecCCCC--------------CHHHHHHHHHHHHHh
Confidence 28999999999 999999999887643
No 128
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.74 E-value=2.6e-18 Score=170.89 Aligned_cols=161 Identities=18% Similarity=0.166 Sum_probs=118.2
Q ss_pred CCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHH
Q 006068 56 DPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGE 135 (662)
Q Consensus 56 ~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~e 135 (662)
......+|+++|+.|+|||||+++|+..... .......|++.......+...+..++||||||+.+|...
T Consensus 11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~----------~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 80 (221)
T 3gj0_A 11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFE----------KKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGL 80 (221)
T ss_dssp CCCCEEEEEEEECTTSSHHHHHTTBHHHHHT----------CEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCC
T ss_pred CcccceEEEEECCCCCCHHHHHHHHHcCCCC----------CCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHH
Confidence 3345679999999999999999997755221 112334477777776666667789999999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
...+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+.+.... .+...+....
T Consensus 81 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~------~~~~~~~~~~------- 147 (221)
T 3gj0_A 81 RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDRKVK------AKSIVFHRKK------- 147 (221)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSCSSC------GGGCCHHHHH-------
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCEEEEEECCcccccccc------HHHHHHHHHc-------
Confidence 88899999999999999886544443 344444443 8899999999999653321 1111122222
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.++++++||++|. |++++++.|.+.+.
T Consensus 148 ~~~~~~~Sa~~~~--------------gi~~l~~~l~~~l~ 174 (221)
T 3gj0_A 148 NLQYYDISAKSNY--------------NFEKPFLWLARKLI 174 (221)
T ss_dssp TCEEEECBGGGTB--------------TTTHHHHHHHHHHH
T ss_pred CCEEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 2579999999998 99999999988764
No 129
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.74 E-value=3.1e-18 Score=176.87 Aligned_cols=154 Identities=20% Similarity=0.273 Sum_probs=113.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------ 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------ 133 (662)
..+|+++|++|+|||||+++|++... ......|+|+......+.+ +..++||||||+.+|.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~------------~v~~~pg~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e 69 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQ------------RVGNWPGVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEA 69 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCC------------CCCSSSCCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCC------------cccCCCCCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHH
Confidence 46899999999999999999986521 1223347887777777766 7899999999999885
Q ss_pred HHHHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 134 GEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 134 ~ev~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
.....++. .+|++|+|+|+.. ......++.++.+.++|+++|+||+|+..... +......+...+|
T Consensus 70 ~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~-----~~~~~~~l~~~lg----- 137 (272)
T 3b1v_A 70 KVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGIPVTIALNMIDVLDGQG-----KKINVDKLSYHLG----- 137 (272)
T ss_dssp HHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCEEEEEECHHHHHHTT-----CCCCHHHHHHHHT-----
T ss_pred HHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCEEEEEEChhhCCcCC-----cHHHHHHHHHHcC-----
Confidence 33445555 5999999999976 23455666777888999999999999732110 0011222222333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+|++++||++|. |+++|++.|.+.+..
T Consensus 138 --~~vi~~SA~~g~--------------gi~el~~~i~~~~~~ 164 (272)
T 3b1v_A 138 --VPVVATSALKQT--------------GVDQVVKKAAHTTTS 164 (272)
T ss_dssp --SCEEECBTTTTB--------------SHHHHHHHHHHSCTT
T ss_pred --CCEEEEEccCCC--------------CHHHHHHHHHHHHhh
Confidence 579999999999 999999999987754
No 130
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.74 E-value=9.1e-18 Score=158.68 Aligned_cols=156 Identities=19% Similarity=0.130 Sum_probs=98.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchH-HH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGG-EV 136 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~-ev 136 (662)
..+|+++|++|+|||||+++|+...+.... ....+.......+.++ .+.+.+|||||+.+|.. ..
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~ 69 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAH------------EMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQ 69 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC------------------------CEEEEEEEETTEEEEEEEECCCCC--------
T ss_pred cEEEEEECCCCCCHHHHHHHHHhccCcccc------------cCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhh
Confidence 468999999999999999999864321111 1111222222333333 46788999999999876 55
Q ss_pred HHHHhhcceEEEEeeCCCCchh-hHHHHHHHHHHc----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALKY----GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~~----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+++.+|++++|+|+.+.... ....++..+... ++|+++|+||+|+.+..... .++...+....+
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~~~~~~~~----- 140 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVS----LEEGRHLAGTLS----- 140 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCSC----HHHHHHHHHHTT-----
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhcccCC----HHHHHHHHHHcC-----
Confidence 5668889999999999874322 233455555443 78999999999985322211 122223333333
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||++|. |++++++.|.+.+
T Consensus 141 --~~~~~~Sa~~~~--------------~v~~l~~~l~~~i 165 (169)
T 3q85_A 141 --CKHIETSAALHH--------------NTRELFEGAVRQI 165 (169)
T ss_dssp --CEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred --CcEEEecCccCC--------------CHHHHHHHHHHHH
Confidence 479999999998 9999999998764
No 131
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.74 E-value=5e-18 Score=162.81 Aligned_cols=159 Identities=19% Similarity=0.207 Sum_probs=108.5
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
.+..+|+++|+.|+|||||+++|+.... ... ..|+......+.+++..+++|||||+.+|...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-----------~~~----~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 80 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEV-----------VTT----KPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWR 80 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEE-----------EEE----CSSTTCCEEEEEETTEEEEEEEEC----CCTTGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCc-----------Ccc----CCcCccceEEEEECCEEEEEEECCCCHhHHHHHH
Confidence 3467999999999999999999985421 011 1122233445667789999999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 138 RVVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.+++.+|++++|+|+.+... .....++..+.. .+.|+++|+||+|+.+... .. ++.+.+..... ...
T Consensus 81 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~----~i~~~~~~~~~--~~~ 152 (183)
T 1moz_A 81 CYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGALS--AS----EVSKELNLVEL--KDR 152 (183)
T ss_dssp GTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCCC--HH----HHHHHTTTTTC--CSS
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCCC--HH----HHHHHhCcccc--cCC
Confidence 88999999999999887643 333444555443 5789999999999965321 11 22222221111 123
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.++++++||++|. |+++++++|.+.++
T Consensus 153 ~~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~ 179 (183)
T 1moz_A 153 SWSIVASSAIKGE--------------GITEGLDWLIDVIK 179 (183)
T ss_dssp CEEEEEEBGGGTB--------------THHHHHHHHHHHHH
T ss_pred ceEEEEccCCCCc--------------CHHHHHHHHHHHHH
Confidence 4689999999998 99999999987653
No 132
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.74 E-value=1.6e-17 Score=160.56 Aligned_cols=154 Identities=16% Similarity=0.196 Sum_probs=97.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+++|+.|+|||||+++|+..........+. +.. ....+.+++ +.++||||||+.+|.....
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~---~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 87 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI----------EDS---YRKQVVIDGETCLLDILDTAGQEEYSAMRD 87 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTC----------CEE---EEEEEEETTEEEEEEEEECCC---------
T ss_pred eeEEEEECcCCCCHHHHHHHHHcCCCccccCCcc----------ceE---EEEEEEECCEEEEEEEEECCChHHHHHHHH
Confidence 4699999999999999999999764322111111 111 112233333 5699999999999998889
Q ss_pred HHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.+++.+|++++|+|+.+....+.. .++..+.. .++|+++|+||+|+..... . .+++.++...++
T Consensus 88 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~~~-~----~~~~~~~~~~~~------ 156 (190)
T 3con_A 88 QYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPTRTV-D----TKQAHELAKSYG------ 156 (190)
T ss_dssp --CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCCCS-C----HHHHHHHHHHHT------
T ss_pred HhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCcccC-C----HHHHHHHHHHcC------
Confidence 999999999999999876543333 34444443 3789999999999865211 1 122233333333
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+|++++||++|. |++++++.|.+.+
T Consensus 157 -~~~~~~Sa~~~~--------------gi~~l~~~l~~~~ 181 (190)
T 3con_A 157 -IPFIETSAKTRQ--------------GVEDAFYTLVREI 181 (190)
T ss_dssp -CCEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred -CeEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 469999999998 9999999998765
No 133
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.74 E-value=6.5e-18 Score=167.74 Aligned_cols=165 Identities=16% Similarity=0.106 Sum_probs=113.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+|+|..|+|||||+++|+..........++ +.+. .....+....+.++||||||+.+|......
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 94 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV----------FENY-TACLETEEQRVELSLWDTSGSPYYDNVRPL 94 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCS----------EEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCee----------eeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHH
Confidence 45799999999999999999999875432222222 2221 122233445578999999999999888888
Q ss_pred HHhhcceEEEEeeCCCCchhhH--HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHH--------HHHHHHHHHHHHhcC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERC--------DEVESLVFDLFANLG 206 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~--------~ei~~~v~~l~~~~g 206 (662)
+++.+|++|+|+|+.+...... ..|+..+... ++|+++|+||+|+........ ....++...+...++
T Consensus 95 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 174 (214)
T 3q3j_B 95 CYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLG 174 (214)
T ss_dssp GCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHT
T ss_pred HcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcC
Confidence 8999999999999988655444 3455556555 789999999999864211000 001122333344444
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccc-hHHHHHHHHhhCCC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRHVPP 254 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g-v~~Lld~I~~~lP~ 254 (662)
+ .+++++||++|. | ++++|+.|.+.+..
T Consensus 175 ~------~~~~e~SA~~g~--------------g~v~~lf~~l~~~~~~ 203 (214)
T 3q3j_B 175 A------EIYLEGSAFTSE--------------KSIHSIFRTASMLCLN 203 (214)
T ss_dssp C------SEEEECCTTTCH--------------HHHHHHHHHHHHHHHC
T ss_pred C------CEEEEeccCCCc--------------ccHHHHHHHHHHHHhc
Confidence 3 169999999998 8 99999999887643
No 134
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.74 E-value=4.2e-18 Score=169.91 Aligned_cols=160 Identities=14% Similarity=0.119 Sum_probs=109.5
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|++|+|||||+++|+....... ....++.......+.+++ +.++||||||+.+|...
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~------------~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 78 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMD------------SKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAI 78 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------------------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCCCCCC------------CCCcccceeEEEEEEECCEEEEEEEEECCCccchhhh
Confidence 4567999999999999999999998643211 112222222333444554 68999999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
+..+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+....... .++...+....+
T Consensus 79 ~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~----- 149 (223)
T 3cpj_B 79 TSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHLRAVP----TEESKTFAQENQ----- 149 (223)
T ss_dssp CGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGGCCSC----HHHHHHHHHHTT-----
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccccccC----HHHHHHHHHHcC-----
Confidence 8888999999999999987654443 3344555443 78999999999985422111 112223333332
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++++||++|. |+++++++|.+.+..
T Consensus 150 --~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~ 176 (223)
T 3cpj_B 150 --LLFTETSALNSE--------------NVDKAFEELINTIYQ 176 (223)
T ss_dssp --CEEEECCCC-CC--------------CHHHHHHHHHHHHTT
T ss_pred --CEEEEEeCCCCC--------------CHHHHHHHHHHHHHH
Confidence 579999999998 999999999988754
No 135
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.73 E-value=4.9e-18 Score=188.41 Aligned_cols=155 Identities=21% Similarity=0.210 Sum_probs=98.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH--
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER-- 138 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~-- 138 (662)
.+|+|+|++|+|||||+|+|++.. ........|+|.+.....+.++++.++||||||+.+|...++.
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~-----------~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~~ve~~g 302 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQE-----------RAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGEEIEHEG 302 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-----------------------------CEEEEETTEEEEEEC---------------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-----------CcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchhHHHHHH
Confidence 479999999999999999998762 2223445688888888888899999999999999887655443
Q ss_pred ------HHhhcceEEEEeeCCCCchh----hHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 139 ------VVGMVEGAILVVDAGEGPLA----QTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 139 ------~l~~aD~aIlVVDa~~G~~~----qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
+++.+|++|+|+|+.++... ....++..+. ++|+|+|+||+|+........ +++.+ .+.
T Consensus 303 i~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~~~~----~~l~~----~~~- 371 (476)
T 3gee_A 303 IRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANADALI----RAIAD----GTG- 371 (476)
T ss_dssp -----CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTHHHH----HHHHH----HHT-
T ss_pred HHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccchhH----HHHHh----cCC-
Confidence 46789999999999988766 4444444443 789999999999976544211 11211 111
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC-CCC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP-PPK 256 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP-~p~ 256 (662)
.|++++||++|. |+++|+++|.+.++ .+.
T Consensus 372 -----~~~i~vSAktg~--------------GI~eL~~~i~~~~~~~~~ 401 (476)
T 3gee_A 372 -----TEVIGISALNGD--------------GIDTLKQHMGDLVKNLDK 401 (476)
T ss_dssp -----SCEEECBTTTTB--------------SHHHHHHHHTHHHHSSCC
T ss_pred -----CceEEEEECCCC--------------CHHHHHHHHHHHHhhccC
Confidence 469999999999 99999999999887 544
No 136
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.73 E-value=2e-17 Score=182.31 Aligned_cols=163 Identities=22% Similarity=0.306 Sum_probs=118.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---- 134 (662)
...+|+|+|++|+|||||+++|++.. ........|+|.+.....+.+++..+.+|||||+..+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~-----------~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~ 247 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE-----------RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPR 247 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST-----------TEEECCCC------CCEEEEETTEEEEESSCSCC---------
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc-----------ccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchh
Confidence 45799999999999999999999762 122344568888887888899999999999999854332
Q ss_pred --------HHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 135 --------EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 135 --------ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
....+++.+|++++|+|+.++...+...++..+...+.|+++|+||+|+...+.....++.+++...+..++
T Consensus 248 ~~e~~~~~~~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 327 (439)
T 1mky_A 248 TVEKYSNYRVVDSIEKADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFID 327 (439)
T ss_dssp --CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGT
T ss_pred hHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCC
Confidence 234678899999999999999888888888888889999999999999865332223334434433332222
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
..|++++||++|. |+++|++.|.+.+
T Consensus 328 ------~~~~~~~SA~~g~--------------gv~~l~~~i~~~~ 353 (439)
T 1mky_A 328 ------YSPLIFTSADKGW--------------NIDRMIDAMNLAY 353 (439)
T ss_dssp ------TSCEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred ------CCcEEEEECCCCC--------------CHHHHHHHHHHHH
Confidence 2579999999999 9999999997655
No 137
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.73 E-value=2e-17 Score=164.00 Aligned_cols=160 Identities=14% Similarity=0.053 Sum_probs=93.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev 136 (662)
+..+|+++|+.|+|||||+++|+..........++ + ......+.++ ...++||||||+.+|....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~----------~---~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 99 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV----------F---ERYMVNLQVKGKPVHLHIWDTAGQDDYDRLR 99 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------CCCC----------C---EEEEEEEEETTEEEEEEEEEC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcc----------c---eeEEEEEEECCEEEEEEEEECCCchhhhHHH
Confidence 35799999999999999999998653221111111 1 1111223333 4589999999999999888
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHHH----------HHHHHHH
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEVE----------SLVFDLF 202 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei~----------~~v~~l~ 202 (662)
..+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+..... ..+.. ++...+.
T Consensus 100 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~v~~~~~~~~~ 177 (214)
T 2j1l_A 100 PLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKS--LVNKLRRNGLEPVTYHRGQEMA 177 (214)
T ss_dssp -----CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHH--HHHHHHHTTCCCCCHHHHHHHH
T ss_pred HHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccch--hhhhhcccccCcccHHHHHHHH
Confidence 8899999999999999875444433 344444443 789999999999965321 11111 2233334
Q ss_pred HhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
..++. .+++++||++|. |++++++.|.+.+.
T Consensus 178 ~~~~~------~~~~~~SA~~g~--------------gi~el~~~l~~~~~ 208 (214)
T 2j1l_A 178 RSVGA------VAYLECSARLHD--------------NVHAVFQEAAEVAL 208 (214)
T ss_dssp HHTTC------SEEEECBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred HhcCC------CEEEEecCCCCC--------------CHHHHHHHHHHHHH
Confidence 44432 379999999998 99999999987653
No 138
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.73 E-value=7.3e-18 Score=163.05 Aligned_cols=159 Identities=17% Similarity=0.212 Sum_probs=111.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|++|+|||||+++|+.... ..... |+......+.+++..+++|||||+.+|......
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~-----------~~~~~----t~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~ 85 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDV-----------VTTVP----TVGVNLETLQYKNISFEVWDLGGQTGVRPYWRC 85 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCC-----------EEECS----STTCCEEEEEETTEEEEEEEECCSSSSCCCCSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCC-----------CCcCC----CCceEEEEEEECCEEEEEEECCCCHhHHHHHHH
Confidence 457999999999999999999965421 00111 222334456678899999999999998877777
Q ss_pred HHhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+|++|+|+|+.+... .....++..... .+.|+++|+||+|+...... .++. +.+....+ ....
T Consensus 86 ~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~----~~~~~~~~--~~~~ 157 (189)
T 2x77_A 86 YFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAASE--AEIA----EQLGVSSI--MNRT 157 (189)
T ss_dssp SSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCCCH--HHHH----HHTTGGGC--CSSC
T ss_pred HhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCCCH--HHHH----HHhChhhc--cCCc
Confidence 8899999999999987643 333344444443 37899999999999654321 1222 11111111 1224
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+|++++||++|. |++++++.|.+.++.
T Consensus 158 ~~~~~~Sa~~~~--------------gi~~l~~~l~~~i~~ 184 (189)
T 2x77_A 158 WTIVKSSSKTGD--------------GLVEGMDWLVERLRE 184 (189)
T ss_dssp EEEEECCTTTCT--------------THHHHHHHHHHHHHH
T ss_pred eEEEEccCCCcc--------------CHHHHHHHHHHHHHh
Confidence 689999999998 999999999887643
No 139
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=5.3e-18 Score=187.86 Aligned_cols=156 Identities=24% Similarity=0.353 Sum_probs=116.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCC--------Ccc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPG--------HAD 131 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPG--------h~d 131 (662)
.++|+|+|++|+|||||+++|++.. ........|+|.+.....+.|.+..++|||||| +..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~-----------~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~ 91 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGER-----------ISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQ 91 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEE-----------EC-----------CEEEECTTCSSCCEEECCCC------CCHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC-----------CcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHH
Confidence 5699999999999999999998752 122344569999999999999999999999999 566
Q ss_pred chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 132 F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
|...+..+++.+|++|+|+|+.++....+..+++.+.+.++|+|+|+||+|+.... ....+ +..+++.
T Consensus 92 ~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~--------~~~~e-~~~lg~~--- 159 (456)
T 4dcu_A 92 IRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR--------ANIYD-FYSLGFG--- 159 (456)
T ss_dssp HHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----------------CC-SGGGSSS---
T ss_pred HHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh--------hhHHH-HHHcCCC---
Confidence 77788889999999999999999999999999999988999999999999985321 11111 2233432
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
+++++||++|. |+.+|++.+.+.++..
T Consensus 160 ---~~~~iSA~~g~--------------gv~~L~~~i~~~l~~~ 186 (456)
T 4dcu_A 160 ---EPYPISGTHGL--------------GLGDLLDAVAEHFKNI 186 (456)
T ss_dssp ---SEEECCTTTCT--------------THHHHHHHHHTTGGGS
T ss_pred ---ceEEeeccccc--------------chHHHHHHHHhhcccc
Confidence 36799999998 9999999999888643
No 140
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.72 E-value=1.7e-17 Score=160.67 Aligned_cols=153 Identities=16% Similarity=0.141 Sum_probs=105.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev 136 (662)
+..+|+|+|..|+|||||+++|+..........+ +.. . ...+.+++ +.++||||||+.+|.
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t-----------~~~-~--~~~~~~~~~~~~l~i~Dt~G~~~~~--- 81 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTYVQEESPE-----------GGR-F--KKEIVVDGQSYLLLIRDEGGPPELQ--- 81 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTT-----------CEE-E--EEEEEETTEEEEEEEEECSSSCCHH---
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCC-----------cce-E--EEEEEECCEEEEEEEEECCCChhhh---
Confidence 4579999999999999999999987433221111 111 1 13334444 678889999999986
Q ss_pred HHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
+++.+|++++|+|+.+....+. ..++..+.. .++|+++|+||+|+........ ..+++..+...++.
T Consensus 82 --~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~~---- 153 (184)
T 3ihw_A 82 --FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVI--DDSRARKLSTDLKR---- 153 (184)
T ss_dssp --HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCS--CHHHHHHHHHHTTT----
T ss_pred --eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccccc--CHHHHHHHHHHcCC----
Confidence 7888999999999988655454 445555554 3679999999999842111000 11223334444431
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|. |++++|+.|.+.+
T Consensus 154 --~~~~e~Sa~~~~--------------gv~~lf~~l~~~i 178 (184)
T 3ihw_A 154 --CTYYETCATYGL--------------NVERVFQDVAQKV 178 (184)
T ss_dssp --CEEEEEBTTTTB--------------THHHHHHHHHHHH
T ss_pred --CeEEEecCCCCC--------------CHHHHHHHHHHHH
Confidence 469999999998 9999999988754
No 141
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=175.18 Aligned_cols=158 Identities=17% Similarity=0.189 Sum_probs=109.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+|+|++|+|||||+++|+.... ... .-|+......+.+++..++||||||+.+|......
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~-----------~~~----~pT~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 228 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI-----------VTT----IPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRH 228 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC-----------EEE----EEETTEEEEEEEETTEEEEEEECC-----CCSHHH
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC-----------CCc----ccccceEEEEEecCcEEEEEEECCCCHhHHHHHHH
Confidence 345899999999999999999976521 011 12444556677888999999999999999999999
Q ss_pred HHhhcceEEEEeeCCCCchh-hHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 139 VVGMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
+++.+|++|+|+|+.+.... ....+|..... .++|+|+|+||+|+.+.... .++ ...+..... ....
T Consensus 229 ~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~~--~~i----~~~~~~~~~--~~~~ 300 (329)
T 3o47_A 229 YFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNA--AEI----TDKLGLHSL--RHRN 300 (329)
T ss_dssp HHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH--HHH----HHHHTCTTC--CSSC
T ss_pred HhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccCH--HHH----HHHhchhhh--hcCC
Confidence 99999999999999764332 22333333332 27899999999999764321 222 222211111 2235
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+|++++||++|. |+++|++.|.+.+.
T Consensus 301 ~~~~~vSAk~g~--------------gi~el~~~l~~~l~ 326 (329)
T 3o47_A 301 WYIQATCATSGD--------------GLYEGLDWLSNQLR 326 (329)
T ss_dssp EEEEECBTTTTB--------------THHHHHHHHHHHHT
T ss_pred CEEEEEECCCCc--------------CHHHHHHHHHHHHH
Confidence 789999999998 99999999988764
No 142
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.72 E-value=3e-19 Score=174.72 Aligned_cols=160 Identities=20% Similarity=0.197 Sum_probs=105.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|+.|+|||||+++|+.... ..+....++.......+.+++ +.++||||||+.+|...
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 98 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTY------------TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTI 98 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCC------------CCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCC------------CCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHH
Confidence 4568999999999999999999975421 122233444444445555555 68999999999999888
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHH-HHHHHHHHc---CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTK-FVLAKALKY---GLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~~---~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
...+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+...+... .++...+...+
T Consensus 99 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v~----~~~~~~~~~~~------ 168 (199)
T 3l0i_B 99 TSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKVVD----YTTAKEFADSL------ 168 (199)
T ss_dssp SCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CCCC----SCC-CHHHHTT------
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCccccCC----HHHHHHHHHHc------
Confidence 88889999999999999886554443 344444433 78999999999985432110 01112222222
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.+|++++||++|. |+++++++|.+.+..
T Consensus 169 -~~~~~~vSA~~g~--------------gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 169 -GIPFLETSAKNAT--------------NVEQSFMTMAAEIKK 196 (199)
T ss_dssp -TCCBCCCCC---H--------------HHHHHHHHHTTTTTT
T ss_pred -CCeEEEEECCCCC--------------CHHHHHHHHHHHHHH
Confidence 2578999999998 999999999887743
No 143
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=161.56 Aligned_cols=162 Identities=17% Similarity=0.019 Sum_probs=107.1
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~e 135 (662)
.+..+|+++|+.|+|||||+++|+..........++ + ......+.+++ +.+.||||||+.+|...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~----------~---~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 84 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA----------F---DNFSAVVSVDGRPVRLQLCDTAGQDEFDKL 84 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC--------CCS----------S---EEEEEEEEETTEEEEEEEEECCCSTTCSSS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcc----------c---ceeEEEEEECCEEEEEEEEECCCCHHHHHH
Confidence 346799999999999999999999763221111111 1 11122334444 57889999999999887
Q ss_pred HHHHHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHH---------HHHHHHHHH
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDE---------VESLVFDLF 202 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~e---------i~~~v~~l~ 202 (662)
...+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+..... ...+ ..++...+.
T Consensus 85 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 163 (201)
T 2q3h_A 85 RPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVK-VLIELDKCKEKPVPEEAAKLLA 163 (201)
T ss_dssp GGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHH-HHHHHHTTTCCCCCHHHHHHHH
T ss_pred hHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchh-hhhhhcccccccCCHHHHHHHH
Confidence 77889999999999999876544443 344445443 889999999999864211 0000 011223333
Q ss_pred HhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
..++. .+++++||++|. |++++++.|.+.+.
T Consensus 164 ~~~~~------~~~~~~Sa~~g~--------------gi~~l~~~l~~~~~ 194 (201)
T 2q3h_A 164 EEIKA------ASYIECSALTQK--------------NLKEVFDAAIVAGI 194 (201)
T ss_dssp HHHTC------SEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred HhcCC------cEEEEEecCCCC--------------CHHHHHHHHHHHHh
Confidence 33332 369999999998 99999999987764
No 144
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.72 E-value=3.2e-17 Score=160.70 Aligned_cols=161 Identities=15% Similarity=0.106 Sum_probs=109.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVERV 139 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~ 139 (662)
..+|+++|+.|+|||||+++|+..........++ +.+.. ....+......++||||||+.+|......+
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~ 93 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTV----------FENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLS 93 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSS----------CCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcc----------cceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHh
Confidence 4699999999999999999999874432221111 11111 111222233689999999999998888888
Q ss_pred HhhcceEEEEeeCCCCchhhH--HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHhcC
Q 006068 140 VGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANLG 206 (662)
Q Consensus 140 l~~aD~aIlVVDa~~G~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~~g 206 (662)
++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+..... ....+ .++...+...++
T Consensus 94 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~ 172 (201)
T 2gco_A 94 YPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEH-TRRELAKMKQEPVRSEEGRDMANRIS 172 (201)
T ss_dssp CTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHH-HHHHHHTTTCCCCCHHHHHHHHHHTT
T ss_pred cCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCcc-chhhhcccccCcCCHHHHHHHHHhCC
Confidence 999999999999887543333 3455555555 899999999999965321 11111 112233333333
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
. .+++++||++|. |+++|++.|.+.+
T Consensus 173 ~------~~~~~~SA~~g~--------------gi~~l~~~i~~~~ 198 (201)
T 2gco_A 173 A------FGYLECSAKTKE--------------GVREVFEMATRAG 198 (201)
T ss_dssp C------SEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred C------cEEEEeeCCCCC--------------CHHHHHHHHHHHH
Confidence 2 269999999998 9999999987653
No 145
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=1.7e-17 Score=163.40 Aligned_cols=162 Identities=15% Similarity=0.117 Sum_probs=108.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+++|+.|+|||||+++|+..........++ +.+.. ..+.++ ...+.||||||+.+|.....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~----------~~~~~---~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 91 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV----------FENYV---ADIEVDGKQVELALWDTAGQEDYDRLRP 91 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSSCC-----------------CCEEE---EEEEETTEEEEEEEEECTTCTTCTTTGG
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcc----------cceEE---EEEEECCEEEEEEEEECCCcHHHHHHHH
Confidence 4699999999999999999999864322111111 11111 123333 36899999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCchhhH--HHHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHh
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT--KFVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFAN 204 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt--~~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~ 204 (662)
.+++.+|++|+|+|+.+....+. ..++..+... ++|+++|+||+|+..... ....+ .++...+...
T Consensus 92 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~ 170 (207)
T 2fv8_A 92 LSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEH-VRTELARMKQEPVRTDDGRAMAVR 170 (207)
T ss_dssp GGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHH-HHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcccc-chhhhhhcccCCCCHHHHHHHHHh
Confidence 88899999999999987533332 3455555554 899999999999964321 10111 0112222222
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
++. .+++++||++|. |+++|++.|.+.+..+
T Consensus 171 ~~~------~~~~~~SA~~g~--------------gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 171 IQA------YDYLECSAKTKE--------------GVREVFETATRAALQK 201 (207)
T ss_dssp TTC------SEEEECCTTTCT--------------THHHHHHHHHHHHHSC
T ss_pred cCC------CEEEEeeCCCCC--------------CHHHHHHHHHHHHHHH
Confidence 222 269999999998 9999999999876544
No 146
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=159.86 Aligned_cols=162 Identities=19% Similarity=0.137 Sum_probs=108.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEec--CeeEEEEeCCCCccchH-
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWR--ENELNMVDTPGHADFGG- 134 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~--~~~iniIDTPGh~dF~~- 134 (662)
....+|+|+|.+|+|||||+++|+...+... ...+++.+.....+.++ ...+.||||||+.+|..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~ 88 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGLQGDSA------------HEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGW 88 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCEECCGG------------GTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhccCCcc------------CCCCcccceEEEEEEECCEEEEEEEEecCCCccchhh
Confidence 3467999999999999999999975422110 11122222222233344 45788999999998865
Q ss_pred HHHHHHhhcceEEEEeeCCCCchh-hHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 135 EVERVVGMVEGAILVVDAGEGPLA-QTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 135 ev~~~l~~aD~aIlVVDa~~G~~~-qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
....+++.+|++|+|+|+.+.... ....++..+.. .++|+|+|+||+|+......... +...+...++
T Consensus 89 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v~~~----~~~~~a~~~~--- 161 (195)
T 3cbq_A 89 LRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLE----EGRHLAGTLS--- 161 (195)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCSCHH----HHHHHHHHTT---
T ss_pred hHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccccCCcCHH----HHHHHHHHhC---
Confidence 556778899999999999864332 23345555544 37899999999999653221111 2222333332
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
++++++||++|. |++++|+.|++.+....
T Consensus 162 ----~~~~e~Sa~~~~--------------~v~~lf~~l~~~i~~~~ 190 (195)
T 3cbq_A 162 ----CKHIETSAALHH--------------NTRELFEGAVRQIRLRR 190 (195)
T ss_dssp ----CEEEEEBTTTTB--------------SHHHHHHHHHHHHHTTC
T ss_pred ----CEEEEEcCCCCC--------------CHHHHHHHHHHHHHHhc
Confidence 469999999998 99999999998876543
No 147
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.71 E-value=4e-17 Score=158.23 Aligned_cols=157 Identities=16% Similarity=0.125 Sum_probs=104.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+|+|..|+|||||+++|+..........++ +.+. .....+....+.++||||||+.+|.. +..
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~-~~~ 87 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNL----------EDTY-SSEETVDHQPVHLRVMDTADLDTPRN-CER 87 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTC----------CEEE-EEEEEETTEEEEEEEEECCC---CCC-THH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCc----------ccee-eEEEEECCEEEEEEEEECCCCCcchh-HHH
Confidence 45799999999999999999999875332222221 1111 11222333457899999999998876 367
Q ss_pred HHhhcceEEEEeeCCCCchhhH-HHHHHHHHH------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
+++.+|++|+|+|+.+....+. ..++..+.. .++|+++|+||+|+....... .++...+...++
T Consensus 88 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~----~~~~~~~~~~~~----- 158 (187)
T 3c5c_A 88 YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVT----KAEGVALAGRFG----- 158 (187)
T ss_dssp HHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSSC----HHHHHHHHHHHT-----
T ss_pred HHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhcCccC----HHHHHHHHHHcC-----
Confidence 8999999999999986543332 334455444 489999999999985422111 122233333333
Q ss_pred CCccEEEccc-ccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASA-KEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA-~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++|| ++|. |++++++.|.+.+
T Consensus 159 --~~~~e~Sa~~~g~--------------gv~~lf~~l~~~i 184 (187)
T 3c5c_A 159 --CLFFEVSACLDFE--------------HVQHVFHEAVREA 184 (187)
T ss_dssp --CEEEECCSSSCSH--------------HHHHHHHHHHHHH
T ss_pred --CcEEEEeecCccc--------------cHHHHHHHHHHHH
Confidence 46999999 8998 9999999998754
No 148
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=8.2e-17 Score=156.85 Aligned_cols=162 Identities=19% Similarity=0.134 Sum_probs=106.2
Q ss_pred CCCCCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH
Q 006068 55 LDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG 134 (662)
Q Consensus 55 ~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ 134 (662)
+...+..+|+++|+.|+|||||+++|+..........+. +... .....+......++||||||+.+ ..
T Consensus 23 ~~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~ 90 (196)
T 2atv_A 23 MAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTL----------ESTY-RHQATIDDEVVSMEILDTAGQED-TI 90 (196)
T ss_dssp ----CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTC----------CEEE-EEEEEETTEEEEEEEEECCCCCC-CH
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCC----------CceE-EEEEEECCEEEEEEEEECCCCCc-cc
Confidence 334456799999999999999999999874322211111 1111 11222233347899999999998 77
Q ss_pred HHHHHHhhcceEEEEeeCCCCch-hhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCC
Q 006068 135 EVERVVGMVEGAILVVDAGEGPL-AQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATD 209 (662)
Q Consensus 135 ev~~~l~~aD~aIlVVDa~~G~~-~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~ 209 (662)
....+++.+|++|+|+|+.+... .....++..+.. .++|+++|+||+|+...+..... +...+...++
T Consensus 91 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v~~~----~~~~~~~~~~--- 163 (196)
T 2atv_A 91 QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHSRQVSTE----EGEKLATELA--- 163 (196)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCSCHH----HHHHHHHHHT---
T ss_pred chhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccccccCHH----HHHHHHHHhC---
Confidence 78889999999999999987432 223334444433 47899999999998542211111 2222333332
Q ss_pred cCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 210 EQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 210 ~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|.+ |++++++.|.+.+
T Consensus 164 ----~~~~~~Sa~~g~~-------------gi~~l~~~l~~~i 189 (196)
T 2atv_A 164 ----CAFYECSACTGEG-------------NITEIFYELCREV 189 (196)
T ss_dssp ----SEEEECCTTTCTT-------------CHHHHHHHHHHHH
T ss_pred ----CeEEEECCCcCCc-------------CHHHHHHHHHHHH
Confidence 5799999999851 6899999988765
No 149
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.71 E-value=7.6e-17 Score=169.41 Aligned_cols=163 Identities=16% Similarity=0.205 Sum_probs=117.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEe-cCeeEEEEeCCCCccc-----h
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISW-RENELNMVDTPGHADF-----G 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~dF-----~ 133 (662)
..+|+++|.+|+|||||+++|+.... .......+.|+......+.+ ++..++||||||+.+| .
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~-----------~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~ 71 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYS-----------AFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVFMENYFT 71 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCC-----------TGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC-----------CccccCcCCccceEEEEEEeCCceEEEEEECCCcHHHhhhhhh
Confidence 35899999999999999999987521 11223456777777666665 5789999999999998 5
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhhHHHHHH----HHHHc--CCCcEEEeccCCCCCCCHH--HHHHHHHHHHHHHHhc
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQTKFVLA----KALKY--GLRPILLLNKVDRPAVSEE--RCDEVESLVFDLFANL 205 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~----~~~~~--~lp~IvviNKiD~~~~~~~--~~~ei~~~v~~l~~~~ 205 (662)
.....+++.+|++|+|+|+.+....+....|. .+... ++|+++|+||+|+...+.. ......+++.++...+
T Consensus 72 ~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~ 151 (307)
T 3r7w_A 72 KQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEF 151 (307)
T ss_dssp TTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHc
Confidence 66777889999999999999876655544332 22222 8999999999999542111 0112335566666666
Q ss_pred CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|+. .+|++++||++ . ++.+++..++..+
T Consensus 152 g~~----~~~~~~tSa~~-~--------------~i~e~~~~iv~~l 179 (307)
T 3r7w_A 152 GFP----NLIGFPTSIWD-E--------------SLYKAWSQIVCSL 179 (307)
T ss_dssp TCC----SCEEEECCTTS-S--------------HHHHHHHHHHHTT
T ss_pred CCC----CeEEEEeeecC-C--------------hHHHHHHHHHHHH
Confidence 643 26799999999 4 7888888777655
No 150
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.71 E-value=2.4e-17 Score=158.83 Aligned_cols=157 Identities=20% Similarity=0.255 Sum_probs=101.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC-----------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH----------- 129 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh----------- 129 (662)
.+|+++|++|+|||||+++|+..... .....++|...... .+. .+++|||||+
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~------------~~~~~~~t~~~~~~--~~~--~~~l~Dt~G~~~~~~~~~~~~ 65 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR------------RGKRPGVTRKIIEI--EWK--NHKIIDMPGFGFMMGLPKEVQ 65 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS------------SSSSTTCTTSCEEE--EET--TEEEEECCCBSCCTTSCHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc------------cCCCCCccceeEEE--ecC--CEEEEECCCccccccCCHHHH
Confidence 58999999999999999999875321 12223454443332 233 7999999994
Q ss_pred ccchHHHHHHHhh-cc---eEEEEeeCCCC-----------chhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHH
Q 006068 130 ADFGGEVERVVGM-VE---GAILVVDAGEG-----------PLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEV 194 (662)
Q Consensus 130 ~dF~~ev~~~l~~-aD---~aIlVVDa~~G-----------~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei 194 (662)
..|......+++. ++ .++.|+|+... ...++..++..+...++|+++|+||+|+.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------ 139 (190)
T 2cxx_A 66 ERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNVQ------ 139 (190)
T ss_dssp HHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCHH------
T ss_pred HHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcHH------
Confidence 4455555555555 55 55556665431 112233455566667999999999999965331
Q ss_pred HHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 195 ESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 195 ~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+...++...++........+++++||++|. |++++++.|.+.+..
T Consensus 140 -~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~--------------~v~~l~~~l~~~~~~ 184 (190)
T 2cxx_A 140 -EVINFLAEKFEVPLSEIDKVFIPISAKFGD--------------NIERLKNRIFEVIRE 184 (190)
T ss_dssp -HHHHHHHHHHTCCGGGHHHHEEECCTTTCT--------------THHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhhhhhccCCcEEEEecCCCC--------------CHHHHHHHHHHhcch
Confidence 122233334444221113468999999998 999999999887643
No 151
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.71 E-value=1.1e-17 Score=165.81 Aligned_cols=161 Identities=17% Similarity=0.099 Sum_probs=107.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCCccchHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh~dF~~ev~ 137 (662)
...+|+|+|++|+|||||+++|+....... .....+.+............ ..++||||||+.+|.....
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~----------~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 79 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKN----------YNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKD 79 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCE----------EETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCH
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCC----------CCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHH
Confidence 467999999999999999999986532110 11111222222111111111 6799999999999988888
Q ss_pred HHHhhcceEEEEeeCCCCchhhHH-HHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTK-FVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~-~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+|++|+|+|+.++...+.. .++..+.. .++|+++|+||+|+...... ..+....+... ..
T Consensus 80 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~-------~~ 148 (218)
T 4djt_A 80 VYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI----SKKLVMEVLKG-------KN 148 (218)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC----C----CHHHHHHHTTT-------CC
T ss_pred HHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccccc----CHHHHHHHHHH-------cC
Confidence 899999999999999987654444 33344433 37899999999998542111 11122222222 23
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++++||++|. |++++++.|.+.+..
T Consensus 149 ~~~~~~Sa~~g~--------------gv~~l~~~l~~~~~~ 175 (218)
T 4djt_A 149 YEYFEISAKTAH--------------NFGLPFLHLARIFTG 175 (218)
T ss_dssp CEEEEEBTTTTB--------------TTTHHHHHHHHHHHC
T ss_pred CcEEEEecCCCC--------------CHHHHHHHHHHHHhc
Confidence 579999999998 999999999887644
No 152
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.54 E-value=8.4e-19 Score=172.12 Aligned_cols=161 Identities=14% Similarity=0.083 Sum_probs=107.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
.+..+|+++|++|+|||||+++|+..........+..+. ......+......++||||||+.+|.....
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~-----------~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 96 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN-----------YSANVMVDGKPVNLGLWDTAGQEDYDRLRP 96 (204)
Confidence 456799999999999999999998653321111111111 011112233456788999999999998888
Q ss_pred HHHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHh
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFAN 204 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~ 204 (662)
.+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+...... .... .++...+...
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~ 175 (204)
T 3th5_A 97 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDT-IEKLKEKKLTPITYPQGLAMAKE 175 (204)
Confidence 899999999999998876544443 344444444 8899999999999643210 0000 0111112111
Q ss_pred cCCCCcCCCc-cEEEcccccCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 205 LGATDEQLDF-PVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 205 ~g~~~~~~~~-Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
+ .+ |++++||++|. |++++++.|.+.
T Consensus 176 ~-------~~~~~~~vSA~~g~--------------gi~~l~~~l~~~ 202 (204)
T 3th5_A 176 I-------GAVKYLECSALTQR--------------GLKTVFDEAIRA 202 (204)
Confidence 1 23 78999999998 999999988764
No 153
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.70 E-value=7.8e-17 Score=166.44 Aligned_cols=168 Identities=17% Similarity=0.192 Sum_probs=102.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccc----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADF---- 132 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF---- 132 (662)
...||+++|++|+|||||+|+|+........... .......++++......+.+++ .+++||||||+.++
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~----~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~ 82 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPG----PSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNS 82 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC-------------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCT
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCccccCCCC----cccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccch
Confidence 3579999999999999999999765321110000 0001133444555555555555 48999999998554
Q ss_pred ---hHHH-------HHHHhh-------------cceEEEEeeC-CCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCH
Q 006068 133 ---GGEV-------ERVVGM-------------VEGAILVVDA-GEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE 188 (662)
Q Consensus 133 ---~~ev-------~~~l~~-------------aD~aIlVVDa-~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~ 188 (662)
...+ ..++.. +|++++++++ ..+....+..+++.+.. ++|+|+|+||+|+. ..
T Consensus 83 ~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~--~~ 159 (274)
T 3t5d_A 83 NCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTL--TP 159 (274)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGS--CH
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCC--CH
Confidence 2222 445554 6788888864 45888899888888877 89999999999984 34
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.......+.+.+.+...+ ++++.+||+++. |+.+++++|.+.+|-
T Consensus 160 ~e~~~~~~~i~~~l~~~~-------i~v~~~sa~~~~--------------~~~~l~~~l~~~~p~ 204 (274)
T 3t5d_A 160 EECQQFKKQIMKEIQEHK-------IKIYEFPETDDE--------------EENKLVKKIKDRLPL 204 (274)
T ss_dssp HHHHHHHHHHHHHHHHTT-------CCCCCC-------------------------CHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHcC-------CeEEcCCCCCCh--------------hHHHHHHHHhcCCCc
Confidence 444455555655555443 457889999998 999999999987764
No 154
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.70 E-value=1.2e-16 Score=162.69 Aligned_cols=168 Identities=18% Similarity=0.125 Sum_probs=115.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCC--------cc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGH--------AD 131 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh--------~d 131 (662)
..+|+|+|++|+|||||+++|++....... ....++|.......+.+++..++||||||+ .+
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~~~~~~~~----------~~~~~~T~~~~~~~~~~~~~~i~liDTPG~~~~~~~~~~~ 90 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILGQRRFFSR----------LGATSVTRACTTGSRRWDKCHVEVVDTPDIFSSQVSKTDP 90 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHTSCCC-------------------CCSCEEEEEEETTEEEEEEECCSCSSTTHHHHST
T ss_pred ceEEEEECCCCCcHHHHHHHHhCCCCcccc----------CCCCCccccEEEEEEEECCcEEEEEECCCCCCCCCCcHHH
Confidence 569999999999999999999987432111 112356666777778899999999999998 56
Q ss_pred chHHHHHHH----hhcceEEEEeeCCCCchhhHHHHHHHHHHc------CCCcEEEeccCCCCCCCHHHHHHHH--HHHH
Q 006068 132 FGGEVERVV----GMVEGAILVVDAGEGPLAQTKFVLAKALKY------GLRPILLLNKVDRPAVSEERCDEVE--SLVF 199 (662)
Q Consensus 132 F~~ev~~~l----~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~------~lp~IvviNKiD~~~~~~~~~~ei~--~~v~ 199 (662)
|..++.+++ +.+|++|+|+|+.. ....+..+++.+.+. +.|+|+|+||+|+.+.+.+.+.... +.+.
T Consensus 91 ~~~~i~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~ 169 (247)
T 3lxw_A 91 GCEERGHCYLLSAPGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLHDYVSNTENRALR 169 (247)
T ss_dssp TSHHHHHHHHHHTTCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHHHHHHHCCCHHHH
T ss_pred HHHHHHHHHHhcCCCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHHHHHhhcccHHHH
Confidence 777777777 89999999999975 666777777777764 7899999999999765543322110 2355
Q ss_pred HHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.++...|.. ++..++.... .....|+.+||+.|.+.++.
T Consensus 170 ~l~~~~g~~-------~~~~~~~~~~---------~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 170 ELVAECGGR-------VCAFDNRATG---------REQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HHHHHTTTC-------EEECCTTCCH---------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCe-------EEEEeCCCCc---------cccHHHHHHHHHHHHHHHHH
Confidence 556655532 3444433210 00112899999999888764
No 155
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.69 E-value=2e-16 Score=151.07 Aligned_cols=155 Identities=16% Similarity=0.162 Sum_probs=100.7
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|..|+|||||+++|+...... ...++ +.. ......+......++||||||+.+ ..
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~----------~~~-~~~~~~~~~~~~~l~i~Dt~G~~~-----~~ 68 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTE----------SEQ-YKKEMLVDGQTHLVLIREEAGAPD-----AK 68 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCS----------SSE-EEEEEEETTEEEEEEEEECSSSCC-----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCc----------cee-EEEEEEECCEEEEEEEEECCCCch-----hH
Confidence 35699999999999999999999874322 11111 111 112222222336789999999987 35
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHH-HHHHH------cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVL-AKALK------YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l-~~~~~------~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
+++.+|++|+|+|+.+....+....| ..+.. .++|+++|+||+|+........ ..+++.++....+
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v--~~~~~~~~~~~~~----- 141 (178)
T 2iwr_A 69 FSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVV--GDARARALXADMK----- 141 (178)
T ss_dssp HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCS--CHHHHHHHHHHHS-----
T ss_pred HHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcC--CHHHHHHHHHhhc-----
Confidence 78889999999999876544444332 23332 3789999999999842111000 0112223333222
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++++++||++|. |++++++.|.+.+
T Consensus 142 -~~~~~~~Sa~~~~--------------~i~~lf~~l~~~~ 167 (178)
T 2iwr_A 142 -RCSYYETXATYGL--------------NVDRVFQEVAQKV 167 (178)
T ss_dssp -SEEEEEEBTTTTB--------------THHHHHHHHHHHH
T ss_pred -CCeEEEEeccccC--------------CHHHHHHHHHHHH
Confidence 2579999999998 9999999998765
No 156
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.69 E-value=1.1e-17 Score=163.75 Aligned_cols=156 Identities=21% Similarity=0.159 Sum_probs=82.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh--cCCCCCccccccccccccccceeEeeeEEEEEec----CeeEEEEeCCCCccch
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ--CGADIPHERAMDSISLERERGITIASKVTGISWR----ENELNMVDTPGHADFG 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~--~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~----~~~iniIDTPGh~dF~ 133 (662)
..+|+|+|+.|+|||||+++|+.. ...... ...+.++.....+.++ ...++||||||+.+|.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~------------~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~ 87 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKDY------------AMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYK 87 (208)
T ss_dssp EEEEEEC----------------------------------------------CEEEECTTSSEEEEEEEEETTTTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCCC------------CCccceEEEEEEEEECCcccEEEEEEEECCCcHHHH
Confidence 469999999999999999999876 221111 1111112233344555 4689999999999998
Q ss_pred HHHHHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHH------cCCCcEEEeccCCCCC-CCHHHHHHHHHHHHHHHHhc
Q 006068 134 GEVERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK------YGLRPILLLNKVDRPA-VSEERCDEVESLVFDLFANL 205 (662)
Q Consensus 134 ~ev~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~------~~lp~IvviNKiD~~~-~~~~~~~ei~~~v~~l~~~~ 205 (662)
.....+++.+|++|+|+|+.++...+ ...++..+.. .++|+++|+||+|+.. ..... .+++.++...+
T Consensus 88 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~v~----~~~~~~~~~~~ 163 (208)
T 2yc2_C 88 EQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVR----LDMAQDWATTN 163 (208)
T ss_dssp HHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC-------CCC----HHHHHHHHHHT
T ss_pred HHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchhhccCC----HHHHHHHHHHc
Confidence 88888899999999999998765433 3345555554 4789999999999864 11111 12333444444
Q ss_pred CCCCcCCCccEEEccccc-CccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 206 GATDEQLDFPVLYASAKE-GWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~-g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+ ++++++||++ |. |++++++.|.+.+
T Consensus 164 ~-------~~~~~~Sa~~~~~--------------gi~~l~~~i~~~~ 190 (208)
T 2yc2_C 164 T-------LDFFDVSANPPGK--------------DADAPFLSIATTF 190 (208)
T ss_dssp T-------CEEEECCC---------------------CHHHHHHHHHH
T ss_pred C-------CEEEEeccCCCCc--------------CHHHHHHHHHHHH
Confidence 3 5799999999 98 9999999988765
No 157
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.69 E-value=4.7e-17 Score=156.90 Aligned_cols=162 Identities=13% Similarity=0.075 Sum_probs=108.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...+|+++|++|+|||||+++|+..........++ +.+. .....+......+.||||||+.+|......
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 74 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----------FENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPL 74 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----------EEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcc----------ceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHh
Confidence 45799999999999999999999864322211111 1111 111122233468999999999999887778
Q ss_pred HHhhcceEEEEeeCCCCchhhHH--HHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHhc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFANL 205 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~~ 205 (662)
+++.+|++|+|+|+.+....+.. .++..+.. .+.|+++|+||+|+.... ....++ .++...+...+
T Consensus 75 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~ 153 (184)
T 1m7b_A 75 SYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGANMAKQI 153 (184)
T ss_dssp GCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHHHHHHH
T ss_pred hcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcch-hhHhhhhhcccCCCCHHHHHHHHHHc
Confidence 88999999999999875444432 34444444 378999999999986421 111110 12233334344
Q ss_pred CCCCcCCCccEEEcccc-cCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 206 GATDEQLDFPVLYASAK-EGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~-~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+. ++++++||+ +|. |++++++.|.+.+
T Consensus 154 ~~------~~~~e~Sa~~~~~--------------gi~~l~~~i~~~~ 181 (184)
T 1m7b_A 154 GA------ATYIECSALQSEN--------------SVRDIFHVATLAC 181 (184)
T ss_dssp TC------SEEEECBTTTBHH--------------HHHHHHHHHHHHH
T ss_pred CC------cEEEEeeecCCCc--------------CHHHHHHHHHHHH
Confidence 32 479999999 687 9999999987653
No 158
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.69 E-value=4.8e-17 Score=160.50 Aligned_cols=162 Identities=13% Similarity=0.076 Sum_probs=107.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
+...+|+|+|..|+|||||+++|+..........++ +.+. .....+......++||||||+.+|.....
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~----------~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 94 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV----------FENY-TASFEIDTQRIELSLWDTSGSPYYDNVRP 94 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCS----------EEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGG
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc----------ceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHH
Confidence 346799999999999999999999864322211111 1111 11112222347899999999999988777
Q ss_pred HHHhhcceEEEEeeCCCCchhhHH--HHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHHh
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQTK--FVLAKALK--YGLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFAN 204 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~~ 204 (662)
.+++.+|++|+|+|+.+....... .++..+.. .+.|+++|+||+|+.... ....+. .++...+...
T Consensus 95 ~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~ 173 (205)
T 1gwn_A 95 LSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDV-STLVELSNHRQTPVSYDQGANMAKQ 173 (205)
T ss_dssp GGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCH-HHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred hhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccch-hhhhhhcccccCCCCHHHHHHHHHH
Confidence 888999999999999875443332 34444544 378999999999986421 111110 1223333434
Q ss_pred cCCCCcCCCccEEEcccc-cCccCCccCCCCCCCccchHHHHHHHHhh
Q 006068 205 LGATDEQLDFPVLYASAK-EGWASSTFTKDPPADVRNMSQLLDAIIRH 251 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~-~g~~~~~~~~~~~~~~~gv~~Lld~I~~~ 251 (662)
++. ++++++||+ +|. |++++|+.|.+.
T Consensus 174 ~~~------~~~~e~SAk~~~~--------------gv~~lf~~l~~~ 201 (205)
T 1gwn_A 174 IGA------ATYIECSALQSEN--------------SVRDIFHVATLA 201 (205)
T ss_dssp HTC------SEEEECCTTTCHH--------------HHHHHHHHHHHH
T ss_pred cCC------CEEEEeeeccCCc--------------CHHHHHHHHHHH
Confidence 432 469999999 677 999999998765
No 159
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.68 E-value=1.3e-16 Score=177.22 Aligned_cols=152 Identities=21% Similarity=0.256 Sum_probs=117.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCc-cch------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHA-DFG------ 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~-dF~------ 133 (662)
.+|+|+|.+|+|||||+|+|+... ........|+|.+.....+.+++..++||||||+. ++.
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~-----------~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~~ve~~ 312 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNED-----------RAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERL 312 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHT-----------BCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCC
T ss_pred CEEEEECcCCCcHHHHHHHHHCCC-----------CCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchhhHHHH
Confidence 589999999999999999999873 12233345777777777888899999999999998 654
Q ss_pred --HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 134 --GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 134 --~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
.....+++.+|++|+|+|+.++...+...+++.+ .+.|+|+|+||+|+..... .. ++.+++ +
T Consensus 313 gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~~~--~~----~~~~~~---~----- 376 (482)
T 1xzp_A 313 GIERTLQEIEKADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKIN--EE----EIKNKL---G----- 376 (482)
T ss_dssp CHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCCC--HH----HHHHHH---T-----
T ss_pred HHHHHHHHhhcccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccccC--HH----HHHHHh---c-----
Confidence 2346788999999999999888777777777655 4889999999999964311 11 222221 1
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
..+|++++||++|. |+++|+++|.+.+.
T Consensus 377 ~~~~~i~iSAktg~--------------Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 377 TDRHMVKISALKGE--------------GLEKLEESIYRETQ 404 (482)
T ss_dssp CSTTEEEEEGGGTC--------------CHHHHHHHHHHHTH
T ss_pred CCCcEEEEECCCCC--------------CHHHHHHHHHHHHh
Confidence 12579999999999 99999999988764
No 160
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.68 E-value=6.2e-17 Score=178.89 Aligned_cols=154 Identities=18% Similarity=0.174 Sum_probs=107.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH--
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER-- 138 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~-- 138 (662)
.+|+|+|++|+|||||+|+|++... .......|+|.+.....+.+++..++||||||+.++...++.
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~-----------a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~~ve~~g 293 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDR-----------AIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSDQVEKIG 293 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHB-----------SCCSCCTTCCHHHHHHEEEETTEEEEECC---------------
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCc-----------ccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchhHHHHHH
Confidence 4799999999999999999998732 112233466666666667788999999999999887655444
Q ss_pred ------HHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCC
Q 006068 139 ------VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQL 212 (662)
Q Consensus 139 ------~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~ 212 (662)
.++.+|++|+|+|+.++...+...++..+. ..|+++|+||+|+....... .+..+. .
T Consensus 294 i~~~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~----------~~~~~~-----~ 356 (462)
T 3geh_A 294 VERSRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT----------SLEYPE-----N 356 (462)
T ss_dssp -----CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST----------TCCCCT-----T
T ss_pred HHHHhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH----------HHHHhc-----c
Confidence 467799999999999988888877777664 47999999999996532210 011111 2
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
.+|++++||++|. |+++|++.|.+.+....
T Consensus 357 ~~~~i~iSAktg~--------------Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 357 ITQIVHTAAAQKQ--------------GIDSLETAILEIVQTGK 386 (462)
T ss_dssp CCCEEEEBTTTTB--------------SHHHHHHHHHHHHTTSS
T ss_pred CCcEEEEECCCCC--------------CHHHHHHHHHHHHhccC
Confidence 3679999999999 99999999999876543
No 161
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.67 E-value=4e-16 Score=174.55 Aligned_cols=158 Identities=18% Similarity=0.200 Sum_probs=115.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+|+|.+|+|||||+++|+....... ..|+......+.++++.++||||||+.+|...+..
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~~~---------------~~T~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 385 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSVTT---------------IPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRH 385 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCCCC---------------CCCSSEEEEEEESSSCEEEEEEECCCGGGSGGGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCCCc---------------CCccceeEEEEEeCCEEEEEEECCCcHHHHHHHHH
Confidence 457999999999999999999998732110 11444555667888999999999999999988889
Q ss_pred HHhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC-CcCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT-DEQL 212 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~-~~~~ 212 (662)
+++.+|++|+|+|+.+....+. ..++..+.. .++|+|+|+||+|+...... .+ +.+. ++.. ....
T Consensus 386 ~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~--~~----~~~~---~~~~~~~~~ 456 (497)
T 3lvq_E 386 YYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAMKP--HE----IQEK---LGLTRIRDR 456 (497)
T ss_dssp GGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSSCCCH--HH----HHHH---TTCTTCCSS
T ss_pred HhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCcCCCH--HH----HHHH---hchhhhhcC
Confidence 9999999999999987643333 334444433 37899999999999654221 11 2121 2211 1123
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.++++++||++|. |+++++++|.+.+..
T Consensus 457 ~~~~~~~SA~~g~--------------gi~~l~~~l~~~~~~ 484 (497)
T 3lvq_E 457 NWYVQPSCATSGD--------------GLYEGLTWLTSNYKS 484 (497)
T ss_dssp CEEEEECBTTTTB--------------THHHHHHHHHHHCC-
T ss_pred CeEEEEEECCCCC--------------CHHHHHHHHHHHHHh
Confidence 4689999999999 999999999988753
No 162
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.63 E-value=5.5e-16 Score=163.21 Aligned_cols=163 Identities=15% Similarity=0.091 Sum_probs=111.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEV 136 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev 136 (662)
...+|+++|.+|+|||||+++|+..........+ +.......+..++ ..++||||||+.+|....
T Consensus 154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t-------------~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~ 220 (332)
T 2wkq_A 154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPT-------------VFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLR 220 (332)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCC-------------SEEEEEEEEEETTEEEEEEEEEECCCGGGTTTG
T ss_pred ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCc-------------ccceeEEEEEECCEEEEEEEEeCCCchhhhHHH
Confidence 3568999999999999999999976432222111 1111222233444 456699999999998888
Q ss_pred HHHHhhcceEEEEeeCCCCchhhHH--HHHHHHHHc--CCCcEEEeccCCCCCCCHHHHHHH---------HHHHHHHHH
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQTK--FVLAKALKY--GLRPILLLNKVDRPAVSEERCDEV---------ESLVFDLFA 203 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt~--~~l~~~~~~--~lp~IvviNKiD~~~~~~~~~~ei---------~~~v~~l~~ 203 (662)
..+++.+|++|+|+|+.+....+.. .++..+... ++|+++|+||+|+..... ..... .++...+..
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~-~~~~~~~~~~~~v~~~~~~~~~~ 299 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD-TIEKLKEKKLTPITYPQGLAMAK 299 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHH-HHHHHHHTTCCCCCHHHHHHHHH
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccc-hhhhccccccccccHHHHHHHHH
Confidence 8889999999999999886554443 344555554 889999999999854321 10110 112233333
Q ss_pred hcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 204 NLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 204 ~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
..+. .|++++||++|. |++++++.|.+.+..|
T Consensus 300 ~~~~------~~~~~~Sa~~~~--------------gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 300 EIGA------VKYLECSALTQR--------------GLKTVFDEAIRAVLCP 331 (332)
T ss_dssp HTTC------SEEEECCTTTCT--------------THHHHHHHHHHHHHC-
T ss_pred HcCC------cEEEEecCCCCc--------------CHHHHHHHHHHHHhcC
Confidence 3332 379999999998 9999999998876443
No 163
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.63 E-value=5e-16 Score=165.26 Aligned_cols=156 Identities=20% Similarity=0.264 Sum_probs=110.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCCcc-------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHAD------- 131 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh~d------- 131 (662)
+.+|+|+|.+|+|||||+++|+... ...+.....|+......+.+.+ ..++||||||+.+
T Consensus 158 la~V~lvG~~nvGKSTLln~L~~~~------------~~i~~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~ 225 (342)
T 1lnz_A 158 LADVGLVGFPSVGKSTLLSVVSSAK------------PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVG 225 (342)
T ss_dssp CCCEEEESSTTSSHHHHHHHSEEEC------------CEESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTT
T ss_pred cCeeeeeCCCCCCHHHHHHHHHcCC------------CccccCCccccCceEEEEEeCCCceEEEecCCCCcccccccch
Confidence 5689999999999999999997652 1122233555666666677765 8999999999643
Q ss_pred chHHHHHHHhhcceEEEEeeCCC----CchhhHHHHHHHHHHc-----CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHH
Q 006068 132 FGGEVERVVGMVEGAILVVDAGE----GPLAQTKFVLAKALKY-----GLRPILLLNKVDRPAVSEERCDEVESLVFDLF 202 (662)
Q Consensus 132 F~~ev~~~l~~aD~aIlVVDa~~----G~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~ 202 (662)
+.....+.+..+|++|+|+|+.+ ....+...++..+..+ ++|+++|+||+|+... . +..+++ .
T Consensus 226 l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--~---e~~~~l---~ 297 (342)
T 1lnz_A 226 LGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA--A---ENLEAF---K 297 (342)
T ss_dssp THHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--H---HHHHHH---H
T ss_pred hHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC--H---HHHHHH---H
Confidence 44556666777999999999875 2334444556666653 6899999999999542 1 112222 2
Q ss_pred HhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 203 ANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
..+.. .++++++||+++. |+++|+++|.+.+..
T Consensus 298 ~~l~~-----~~~v~~iSA~tg~--------------gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 298 EKLTD-----DYPVFPISAVTRE--------------GLRELLFEVANQLEN 330 (342)
T ss_dssp HHCCS-----CCCBCCCSSCCSS--------------TTHHHHHHHHHHHTS
T ss_pred HHhhc-----CCCEEEEECCCCc--------------CHHHHHHHHHHHHhh
Confidence 22221 1568999999998 999999999988754
No 164
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=1.3e-15 Score=151.37 Aligned_cols=158 Identities=15% Similarity=0.089 Sum_probs=99.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCcc-chHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHAD-FGGE 135 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~d-F~~e 135 (662)
...+|+|+|.+|+|||||+++|+........ +. ...|.+.... .+.+++ ..+.+|||+|... +...
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~-----~~----~~~g~d~~~~--~i~~~~~~~~l~~~Dt~g~~~~~~~l 104 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----DC----EVLGEDTYER--TLMVDGESATIILLDMWENKGENEWL 104 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCC-----C-------CCTTEEEE--EEEETTEEEEEEEECCTTTTHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCC-----cC----CccceeeEEE--EEEECCeeeEEEEeecCCCcchhhhH
Confidence 4579999999999999999999854221000 00 0012222222 233444 4678999999887 3333
Q ss_pred HHHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCc
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~ 210 (662)
...+++.+|++|+|+|.++....+ ...++..+.+ .++|+|+|+||+|+...+..... +...+....+
T Consensus 105 ~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v~~~----e~~~~a~~~~---- 176 (211)
T 2g3y_A 105 HDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVS----EGRACAVVFD---- 176 (211)
T ss_dssp HHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCSCHH----HHHHHHHHHT----
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcCceEeHH----HHHHHHHHcC----
Confidence 334456789999999987643322 2334444443 37899999999998542211111 1111222222
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++++++||++|. |++++|+.|.+.+
T Consensus 177 ---~~~~e~SAk~g~--------------~v~elf~~l~~~i 201 (211)
T 2g3y_A 177 ---CKFIETSAAVQH--------------NVKELFEGIVRQV 201 (211)
T ss_dssp ---CEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred ---CEEEEEeCCCCC--------------CHHHHHHHHHHHH
Confidence 469999999999 9999999998765
No 165
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.61 E-value=1.6e-15 Score=162.84 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=102.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCe--eEEEEeCCCCccch----
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN--ELNMVDTPGHADFG---- 133 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~--~iniIDTPGh~dF~---- 133 (662)
..+|+|+|++|+|||||+++|+...... ....+....+..+++++......+.+.+. .+++|||||+.|+.
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~---~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e 113 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYP---ERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD 113 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC------------------CEEEEEEEEC----CEEEEEEEEC------------
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCC---CCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHH
Confidence 4689999999999999999987542110 11111111222234444444444444443 79999999995543
Q ss_pred ---HHHH-------HHHhhc-------------ceEEEEeeC-CCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHH
Q 006068 134 ---GEVE-------RVVGMV-------------EGAILVVDA-GEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (662)
Q Consensus 134 ---~ev~-------~~l~~a-------------D~aIlVVDa-~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (662)
..+. .+++.+ |+++++|++ ..+.......+++.+ ..++|+|+|+||+|+.. ..
T Consensus 114 ~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~~~~piIlV~NK~Dl~~--~~ 190 (361)
T 2qag_A 114 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-HNKVNIVPVIAKADTLT--LK 190 (361)
T ss_dssp --CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-CS-SCEEEEEECCSSSC--HH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-ccCCCEEEEEECCCCCC--HH
Confidence 2222 455443 357777775 566666665565554 36899999999999954 33
Q ss_pred HHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCCCCCCCCceeEEEe
Q 006068 190 RCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPKASLDAPFQMLVTM 269 (662)
Q Consensus 190 ~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~~~~~~p~~~~V~~ 269 (662)
.+....+++.+++... .+|++++||++|.+ .. .+..+++.|.+.+|.+....+.++..
T Consensus 191 ev~~~k~~i~~~~~~~-------~i~~~~~Sa~~~~~-~e----------~~~~l~~~i~~~ip~~vv~s~~~~~~---- 248 (361)
T 2qag_A 191 ERERLKKRILDEIEEH-------NIKIYHLPDAESDE-DE----------DFKEQTRLLKASIPFSVVGSNQLIEA---- 248 (361)
T ss_dssp HHHHHHHHHHHHTTCC--------CCSCCCC--------------------CHHHHHHHHHTCSCEECCCSEEC------
T ss_pred HHHHHHHHHHHHHHHC-------CCCEEeCCCcCCCc-ch----------hHHHHHHHHHhcCCCCEeCCCCcccc----
Confidence 3333334554544333 36799999999973 21 57788899988888765544443322
Q ss_pred eeeecccceEEEEEEee-ceecc
Q 006068 270 MEKDFYLGRILTGRVSS-GVVSV 291 (662)
Q Consensus 270 ~~~~~~~G~i~~gRV~s-G~l~~ 291 (662)
.|+.+.||.|. |.+..
T Consensus 249 ------~g~~~~gr~ypwg~~~v 265 (361)
T 2qag_A 249 ------KGKKVRGRLYPWGVVEV 265 (361)
T ss_dssp ----------CEEECCSSCCEES
T ss_pred ------CCeEEEEEecCCceEec
Confidence 36667777773 55443
No 166
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.61 E-value=1.9e-15 Score=152.53 Aligned_cols=167 Identities=23% Similarity=0.233 Sum_probs=100.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc-----
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF----- 132 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF----- 132 (662)
...++|+|+|++|+|||||+++|++..... ......++|.......+.+++..++||||||+.+.
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~~~~----------~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~~ 96 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRKVFH----------SGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPNA 96 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSCCSC----------C-------CCSCEEEEEEETTEEEEEEECCSCC-----CH
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCCcCc----------cCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCHH
Confidence 457899999999999999999999763211 11122366777777788899999999999997653
Q ss_pred --hHHHHHH----HhhcceEEEEeeCCCCchhhHHHHHHHHH-----HcCCCcEEEeccCCCCCCCHHHHHHH----HHH
Q 006068 133 --GGEVERV----VGMVEGAILVVDAGEGPLAQTKFVLAKAL-----KYGLRPILLLNKVDRPAVSEERCDEV----ESL 197 (662)
Q Consensus 133 --~~ev~~~----l~~aD~aIlVVDa~~G~~~qt~~~l~~~~-----~~~lp~IvviNKiD~~~~~~~~~~ei----~~~ 197 (662)
..++.+. .+.+|++|+|+|+... ......++..+. ....|+++|+||+|+..... +.+. .+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~l~v~d~~~~-~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~--~~~~i~~~~~~ 173 (239)
T 3lxx_A 97 ETSKEIIRCILLTSPGPHALLLVVPLGRY-TEEEHKATEKILKMFGERARSFMILIFTRKDDLGDTN--LHDYLREAPED 173 (239)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEEEETTCC-SSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--------------CHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEEeeCCCC-CHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCccc--HHHHHHhchHH
Confidence 2233333 3446999999998753 334444444432 23568999999999854321 1111 123
Q ss_pred HHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 198 VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 198 v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+.+++...+. .+++.++..+.+ ....++.+||+.|.+.+.
T Consensus 174 l~~l~~~~~~-------~~~~~~~~~~~~---------~~~~~v~~ll~~i~~~~~ 213 (239)
T 3lxx_A 174 IQDLMDIFGD-------RYCALNNKATGA---------EQEAQRAQLLGLIQRVVR 213 (239)
T ss_dssp HHHHHHHHSS-------SEEECCTTCCHH---------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC-------EEEEEECCCCcc---------ccHHHHHHHHHHHHHHHH
Confidence 4555555543 244554443210 011288999998876653
No 167
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.60 E-value=2.1e-15 Score=145.57 Aligned_cols=168 Identities=19% Similarity=0.185 Sum_probs=101.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEE---EecCeeEEEEeCCCCccchHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI---SWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~---~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
.+|+|+|.+|+|||||+++|+....... .......|+.+......+ ..+...+++|||||+.+|.....
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~--------~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 74 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDL--------GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHP 74 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccC--------CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhH
Confidence 4899999999999999999986311000 000011122222211111 12467899999999998877777
Q ss_pred HHHhhcceEEEEeeCCCCc--hhhHHHHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHH-HHHHHhcCCCCcCC
Q 006068 138 RVVGMVEGAILVVDAGEGP--LAQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLV-FDLFANLGATDEQL 212 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~--~~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v-~~l~~~~g~~~~~~ 212 (662)
.+++.+|++++|+|.+++. ......++..+.. .+.|+++|+||+|+... ........+. ..+...+++..
T Consensus 75 ~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~--- 149 (184)
T 2zej_A 75 HFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE--KQRKACMSKITKELLNKRGFPA--- 149 (184)
T ss_dssp HHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH--HHHHHHHHHHHHHTTTCTTSCE---
T ss_pred HHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc--hhhHHHHHHHHHHHHHhcCCcc---
Confidence 8889999999999988763 2233345554443 37889999999998542 1111111111 12222222210
Q ss_pred CccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 213 DFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 213 ~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
..+++++||++|. .++++|++.|.+.++.
T Consensus 150 ~~~~~~~Sa~~~~-------------~~~~~l~~~i~~~~~~ 178 (184)
T 2zej_A 150 IRDYHFVNATEES-------------DALAKLRKTIINESLN 178 (184)
T ss_dssp EEEEEECCTTSCC-------------HHHHHHHHHHHHHHHC
T ss_pred hhheEEEecccCc-------------hhHHHHHHHHHHHHhc
Confidence 0138999999983 1799999999887654
No 168
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.60 E-value=9.7e-15 Score=156.52 Aligned_cols=156 Identities=18% Similarity=0.189 Sum_probs=106.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH----
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---- 134 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---- 134 (662)
...+|+++|++|+|||||+++|+.... ......+.|.......+.+++..+.+|||||+.++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~------------~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~ 233 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP------------EIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERN 233 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC------------EEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC------------ccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhh
Confidence 467999999999999999999986521 1122234455555556667788999999999876421
Q ss_pred -----HHHHHHhhcceEEEEeeCCCCc--hhh-HHHHHHHHHH-c-CCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 135 -----EVERVVGMVEGAILVVDAGEGP--LAQ-TKFVLAKALK-Y-GLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 135 -----ev~~~l~~aD~aIlVVDa~~G~--~~q-t~~~l~~~~~-~-~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
.+......+|++|+|+|+.... ..+ ...++..+.. . +.|+|+|+||+|+.. ...+ +++.+++..
T Consensus 234 ~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~--~~~~----~~~~~~~~~ 307 (357)
T 2e87_A 234 EIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVAD--EENI----KRLEKFVKE 307 (357)
T ss_dssp HHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCC--HHHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCC--hHHH----HHHHHHHHh
Confidence 1112224589999999987643 222 2345554443 2 899999999999953 2222 223333332
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
. .+|++++||++|. |+++|+++|.+.+.
T Consensus 308 ~-------~~~~~~iSA~~g~--------------gi~~l~~~i~~~l~ 335 (357)
T 2e87_A 308 K-------GLNPIKISALKGT--------------GIDLVKEEIIKTLR 335 (357)
T ss_dssp T-------TCCCEECBTTTTB--------------THHHHHHHHHHHHH
T ss_pred c-------CCCeEEEeCCCCc--------------CHHHHHHHHHHHHH
Confidence 2 2579999999999 99999999987763
No 169
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.60 E-value=6.4e-15 Score=158.15 Aligned_cols=165 Identities=21% Similarity=0.173 Sum_probs=107.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc-----h
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF-----G 133 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF-----~ 133 (662)
.++.|+|+|++|+|||||+++|++.. ...+...+.|.+.....+.+++..+.+|||||+.+. .
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~------------~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lv 245 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLT------------QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIV 245 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------------------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCC------------ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHH
Confidence 46679999999999999999998652 122233466777777778888899999999997331 1
Q ss_pred ---HHHHHHHhhcceEEEEeeCCCCc--h-hhHHHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 134 ---GEVERVVGMVEGAILVVDAGEGP--L-AQTKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 134 ---~ev~~~l~~aD~aIlVVDa~~G~--~-~qt~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
..+...+..+|.+++|+|+.+.. . .+...+...+.. .+.|+|+|.||+|+...... +..+.+..+...
T Consensus 246 e~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~---~~~~~~~~l~~~ 322 (364)
T 2qtf_A 246 DAFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLY---KKLDLVEKLSKE 322 (364)
T ss_dssp HHHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHH---HHHHHHHHHHHH
Confidence 12233467899999999998764 2 222223333444 46789999999999654321 112222222222
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCCC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPPK 256 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p~ 256 (662)
++.. ..+++++||++|. |+++|++.|.+.++.|.
T Consensus 323 l~~~----~~~~~~~SA~~g~--------------gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 323 LYSP----IFDVIPISALKRT--------------NLELLRDKIYQLATQLS 356 (364)
T ss_dssp HCSC----EEEEEECBTTTTB--------------SHHHHHHHHHHHHHHHC
T ss_pred hcCC----CCcEEEEECCCCc--------------CHHHHHHHHHHHhcccC
Confidence 2111 2468999999998 99999999988775543
No 170
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.59 E-value=5.4e-15 Score=146.23 Aligned_cols=145 Identities=18% Similarity=0.231 Sum_probs=89.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
.+..+|+++|++|+|||||+++|+....... + ......++. .+....++||||||+.+|...+.
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~----~-----~~~~~~~~~-------~~~~~~~~l~Dt~G~~~~~~~~~ 73 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----V-----VSQEPLSAA-------DYDGSGVTLVDFPGHVKLRYKLS 73 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB----C-----CCSSCEEET-------TGGGSSCEEEECCCCGGGTHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe----e-----eecCceEEE-------EeeCceEEEEECCCcHHHHHHHH
Confidence 4567999999999999999999998743210 0 000111111 12667899999999999998888
Q ss_pred HHHhh----cceEEEEeeCC-C-CchhhHHHHHHHHHH-------cCCCcEEEeccCCCCCCCH-HHHH-HHHHHHHHHH
Q 006068 138 RVVGM----VEGAILVVDAG-E-GPLAQTKFVLAKALK-------YGLRPILLLNKVDRPAVSE-ERCD-EVESLVFDLF 202 (662)
Q Consensus 138 ~~l~~----aD~aIlVVDa~-~-G~~~qt~~~l~~~~~-------~~lp~IvviNKiD~~~~~~-~~~~-ei~~~v~~l~ 202 (662)
.+++. +|++|+|+|+. + ........++..... .++|+++|+||+|+..... .... .+.+++..+.
T Consensus 74 ~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~ 153 (218)
T 1nrj_B 74 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTARPPSKIKDALESEIQKVI 153 (218)
T ss_dssp HHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHHHHHHHHHHHHHHHH
Confidence 88887 99999999987 2 222333344433332 4889999999999976543 1111 1222233332
Q ss_pred HhcCCCCcCCCccEEEcccccCc
Q 006068 203 ANLGATDEQLDFPVLYASAKEGW 225 (662)
Q Consensus 203 ~~~g~~~~~~~~Pvi~~SA~~g~ 225 (662)
... .++++++||++|.
T Consensus 154 ~~~-------~~~~~~~Sa~~~~ 169 (218)
T 1nrj_B 154 ERR-------KKSLNEVERKINE 169 (218)
T ss_dssp HHH-------HHHHHC-------
T ss_pred HHH-------hcccccccccccc
Confidence 221 2457888999886
No 171
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.59 E-value=5.1e-15 Score=153.91 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=107.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCC------ccc---c------------------cccccc------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP------HER---A------------------MDSISL------------ 99 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~------~~~---v------------------~D~~~~------------ 99 (662)
...+|+|+|.+|+|||||+++|++....... ..+ . .+....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4679999999999999999999987542110 010 0 111000
Q ss_pred ccccceeEeeeEEEEEec-CeeEEEEeCCCCc-------------cchHHHHHHHhhcceEE-EEeeCCCCchhhHH-HH
Q 006068 100 ERERGITIASKVTGISWR-ENELNMVDTPGHA-------------DFGGEVERVVGMVEGAI-LVVDAGEGPLAQTK-FV 163 (662)
Q Consensus 100 E~ergiTi~~~~~~~~~~-~~~iniIDTPGh~-------------dF~~ev~~~l~~aD~aI-lVVDa~~G~~~qt~-~~ 163 (662)
....|++.......+... ...++||||||+. .|...+..+++.++.+| +|+|+..+...+.. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 000233222222222232 4789999999974 34556677888888777 68999988877775 46
Q ss_pred HHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHH
Q 006068 164 LAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (662)
Q Consensus 164 l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~ 243 (662)
++.+...+.|+++|+||+|+....... .+ .+...-.....-.+|++++||++|. |+++
T Consensus 185 ~~~~~~~~~~~i~V~NK~Dl~~~~~~~-~~-------~~~~~~~~~~~~~~~v~~~SA~~~~--------------gi~~ 242 (299)
T 2aka_B 185 AKEVDPQGQRTIGVITKLDLMDEGTDA-RD-------VLENKLLPLRRGYIGVVNRSQKDID--------------GKKD 242 (299)
T ss_dssp HHHHCTTCSSEEEEEECGGGSCTTCCC-HH-------HHTTCSSCCTTCEEECCCCCCBCTT--------------SCBC
T ss_pred HHHhCCCCCeEEEEEEccccCCCCchH-HH-------HHhCCcCcCCCCcEEEECCChhhcc--------------cccc
Confidence 777766789999999999996532211 11 1111000000012478999999998 8888
Q ss_pred HHHHHHhh
Q 006068 244 LLDAIIRH 251 (662)
Q Consensus 244 Lld~I~~~ 251 (662)
|++.|.+.
T Consensus 243 l~~~l~~~ 250 (299)
T 2aka_B 243 ITAALAAE 250 (299)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 172
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.58 E-value=9e-15 Score=142.47 Aligned_cols=157 Identities=15% Similarity=0.104 Sum_probs=98.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCcc-chHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHAD-FGGEV 136 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~d-F~~ev 136 (662)
..+|+|+|.+|+|||||+++|++....... +. ...|.+.... .+.+++ ..+.+|||+|... +....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~-----~~----~~~~~~~~~~--~~~~~~~~~~l~~~Dt~~~~~~~~~~~ 74 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDS-----DX----EVLGEDTYER--TLMVDGESATIILLDMWENKGENEWLH 74 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC-------------GGGCTTEEEE--EEEETTEEEEEEEECCCCC----CTTG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCc-----cc----cccceeEEEE--EEEECCeEEEEEEEEeccCcchhhhHH
Confidence 568999999999999999999975321000 00 0112222222 234444 4678999999765 32233
Q ss_pred HHHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 137 ERVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 137 ~~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
..+++.+|++++|+|.++....+. ..++..+.. .++|+|+|.||+|+...+..... +...+....
T Consensus 75 ~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v~~~----~~~~~a~~~------ 144 (192)
T 2cjw_A 75 DHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVS----EGRAXAVVF------ 144 (192)
T ss_dssp GGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCSCHH----HHHHHHHHT------
T ss_pred HhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhccccccHH----HHHHHHHHh------
Confidence 456788999999999876433232 334444443 37899999999998532111111 111111222
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++++++||++|. |++++|+.|.+.+
T Consensus 145 -~~~~~e~SA~~g~--------------~v~~lf~~l~~~~ 170 (192)
T 2cjw_A 145 -DXKFIETSAAVQH--------------NVKELFEGIVRQV 170 (192)
T ss_dssp -TCEEEECBTTTTB--------------SHHHHHHHHHHHH
T ss_pred -CCceEEeccccCC--------------CHHHHHHHHHHHH
Confidence 2468999999998 9999999998766
No 173
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.58 E-value=6.8e-15 Score=150.82 Aligned_cols=116 Identities=15% Similarity=0.172 Sum_probs=85.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
+..+|+++|++|+|||||+++|++.... ......+.|+......+.+++..++|||||||.+|......
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~-----------~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~ 103 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVV-----------RVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQ 103 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCS-----------CCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCc-----------ccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcccchHH
Confidence 3579999999999999999999976321 12234566777777888899999999999999988643333
Q ss_pred HHh---------hcceEEEEeeCCC-CchhhHHHHHHHHHHc-C----CCcEEEeccCCCCC
Q 006068 139 VVG---------MVEGAILVVDAGE-GPLAQTKFVLAKALKY-G----LRPILLLNKVDRPA 185 (662)
Q Consensus 139 ~l~---------~aD~aIlVVDa~~-G~~~qt~~~l~~~~~~-~----lp~IvviNKiD~~~ 185 (662)
+++ .+|++|+|+|... ........+++.+.+. + .|+++|+||+|+..
T Consensus 104 ~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 104 ALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp HHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 332 6899999987654 3444455666666553 2 38899999999853
No 174
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.57 E-value=4.5e-15 Score=155.72 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=77.3
Q ss_pred cCeeEEEEeCCCCcc-------------chHHHHHHHhhcceEEEEeeC-CCCchhhH-HHHHHHHHHcCCCcEEEeccC
Q 006068 117 RENELNMVDTPGHAD-------------FGGEVERVVGMVEGAILVVDA-GEGPLAQT-KFVLAKALKYGLRPILLLNKV 181 (662)
Q Consensus 117 ~~~~iniIDTPGh~d-------------F~~ev~~~l~~aD~aIlVVDa-~~G~~~qt-~~~l~~~~~~~lp~IvviNKi 181 (662)
.+..++||||||+.+ |...+..++..+|++|+|+|+ ..+...+. ..+++.+...+.|+++|+||+
T Consensus 129 ~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~ 208 (315)
T 1jwy_B 129 HVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL 208 (315)
T ss_dssp TSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred CCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCc
Confidence 457899999999864 566778899999999999996 56655444 467777777899999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEccccc---CccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 182 DRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKE---GWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 182 D~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~---g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
|+....... . +.+...-.....-.+|+.+.||.+ +. |+.++++.+.+++|.
T Consensus 209 Dl~~~~~~~----~----~~~~~~~~~~~~~~~~v~~~sa~~~~~~~--------------gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 209 DLMDKGTDA----M----EVLTGRVIPLTLGFIGVINRSQEDIIAKK--------------SIRESLKSEILYFKN 262 (315)
T ss_dssp TSSCSSCCC----H----HHHTTSSSCCTTCEEECCCCCHHHHSSSC--------------CHHHHHHHHHHHHHT
T ss_pred ccCCcchHH----H----HHHhCCCccCCCCeEEEecCChhhhccCC--------------CHHHHHHHHHHHHhC
Confidence 996533211 1 111110000000013444555554 33 899999999988865
No 175
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.57 E-value=9.4e-15 Score=142.75 Aligned_cols=157 Identities=17% Similarity=0.146 Sum_probs=106.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccchHHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~~ev~ 137 (662)
..+|+|+|+.|+|||||+++|++....... ...++.......+.+++ ..+.||||||+..|.....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~------------~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~ 72 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES------------KSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITS 72 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC---------------CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCH
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC------------CCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhH
Confidence 578999999999999999999986332111 11122222233444555 5678999999998877777
Q ss_pred HHHhhcceEEEEeeCCCCchhhH-HHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCC
Q 006068 138 RVVGMVEGAILVVDAGEGPLAQT-KFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLD 213 (662)
Q Consensus 138 ~~l~~aD~aIlVVDa~~G~~~qt-~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~ 213 (662)
.+++.+|++++|+|..+....+. ..++..+.. .+.|+++++||+|+........ ++...+.... .
T Consensus 73 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~----~~a~~l~~~~-------~ 141 (199)
T 2f9l_A 73 AYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT----DEARAFAEKN-------N 141 (199)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGCCSCH----HHHHHHHHHT-------T
T ss_pred HHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccccCcCH----HHHHHHHHHc-------C
Confidence 78889999999999887544333 334444433 3678899999999854221111 1222333332 2
Q ss_pred ccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 214 FPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 214 ~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
++++.+||+++. |++++++.|.+.+.
T Consensus 142 ~~~~d~Sal~~~--------------~i~~l~~~l~~~~~ 167 (199)
T 2f9l_A 142 LSFIETSALDST--------------NVEEAFKNILTEIY 167 (199)
T ss_dssp CEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 468899999998 99999999887663
No 176
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.57 E-value=1.9e-15 Score=170.77 Aligned_cols=160 Identities=18% Similarity=0.257 Sum_probs=107.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEE----EE----EecCeeEEEEeCCCCc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVT----GI----SWRENELNMVDTPGHA 130 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~----~~----~~~~~~iniIDTPGh~ 130 (662)
...+|+++|.+|+|||||+++|+..........+ .|.++..... .+ ...+..++||||||+.
T Consensus 40 ~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t----------~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e 109 (535)
T 3dpu_A 40 QEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQT----------HGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQE 109 (535)
T ss_dssp CEEEEEEESSSCSSHHHHHHHHHC---------------------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc----------cceEEEEeccccccceeecCCCceEEEEEEECCcHH
Confidence 4579999999999999999999976432111111 1222221100 01 1236889999999999
Q ss_pred cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcC--CCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 006068 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG--LRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGAT 208 (662)
Q Consensus 131 dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~--lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~ 208 (662)
.|.......++.+|++|+|+|+... .....++..+...+ .|+|+|+||+|+....... .+++.+++..++
T Consensus 110 ~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v~----~~~~~~~~~~~~-- 181 (535)
T 3dpu_A 110 IMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPSYNIE----QKKINERFPAIE-- 181 (535)
T ss_dssp TTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTTCCCC----HHHHHHHCGGGT--
T ss_pred HHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccccccC----HHHHHHHHHhcC--
Confidence 9988888889999999999998764 45566777777765 9999999999996533211 122333443333
Q ss_pred CcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 209 DEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 209 ~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
+|++++||++|. |+++|++.|.+.+...
T Consensus 182 -----~~~~~vSA~~g~--------------gi~eL~~~l~~~~~~~ 209 (535)
T 3dpu_A 182 -----NRFHRISCKNGD--------------GVESIAKSLKSAVLHP 209 (535)
T ss_dssp -----TCEEECCC-------------------CTTHHHHHHHHHTCT
T ss_pred -----CceEEEecCccc--------------CHHHHHHHHHHHHhcc
Confidence 479999999998 9999999999887654
No 177
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.57 E-value=4e-15 Score=159.47 Aligned_cols=173 Identities=18% Similarity=0.133 Sum_probs=107.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccccccccc------------------ccceeEeeeEE--------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLER------------------ERGITIASKVT-------- 112 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~------------------ergiTi~~~~~-------- 112 (662)
+.+.|+|+|++|+|||||+++|............+.|.++... ..+..+.....
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 157 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGVT 157 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccchh
Confidence 4679999999999999999999865311111111122211111 11222211111
Q ss_pred --------EEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 113 --------GISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 113 --------~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
.+.+.++.+.||||||... .....+..+|.+|+|+|+..+...+... .....+|.++|+||+|+.
T Consensus 158 ~~t~d~i~~~~~~~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~----~~~~~~p~ivVlNK~Dl~ 230 (355)
T 3p32_A 158 RATRETVVLLEAAGFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK----KGVLELADIVVVNKADGE 230 (355)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC----TTSGGGCSEEEEECCCGG
T ss_pred HHHHHHHHHHhhCCCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH----HhHhhcCCEEEEECCCCc
Confidence 1134578999999999644 3334569999999999987665443322 111346999999999984
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 185 AVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 185 ~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+ ........+++...+..++........|++++||++|. |+++|+++|.++++.
T Consensus 231 ~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~--------------Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 231 H--HKEARLAARELSAAIRLIYPREALWRPPVLTMSAVEGR--------------GLAELWDTVERHRQV 284 (355)
T ss_dssp G--HHHHHHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTB--------------SHHHHHHHHHHHHHH
T ss_pred C--hhHHHHHHHHHHHHHhhccccccCCCCceEEEEcCCCC--------------CHHHHHHHHHHHHHH
Confidence 3 22333344455544443332222234689999999998 999999999988753
No 178
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.56 E-value=2.8e-14 Score=149.76 Aligned_cols=163 Identities=15% Similarity=0.190 Sum_probs=106.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchH---HHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGG---EVER 138 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~---ev~~ 138 (662)
+|+++|..|+|||||+.++....... .....+.|+......+. ...+++||||||+.+|.. ....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~-----------~~~~~~~Tig~~~~~v~-~~v~LqIWDTAGQErf~~~~l~~~~ 68 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPL-----------DTLYLESTSNPSLEHFS-TLIDLAVMELPGQLNYFEPSYDSER 68 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSG-----------GGTTCCCCCSCCCEEEC-SSSCEEEEECCSCSSSCCCSHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCC-----------ccceecCeeeeeeEEEc-cEEEEEEEECCCchhccchhhhhhh
Confidence 48999999999999998766431100 00112334433333332 347899999999999964 4678
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHHHHH----HH--cCCCcEEEeccCCCCCCCHH--HHHHHHHHHHHHHHhcCCCCc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKA----LK--YGLRPILLLNKVDRPAVSEE--RCDEVESLVFDLFANLGATDE 210 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l~~~----~~--~~lp~IvviNKiD~~~~~~~--~~~ei~~~v~~l~~~~g~~~~ 210 (662)
+++.++++|+|+|+++. ......+|... .. .++|+++|+||+|+...+.. ...++..+..+-+.+.+. +
T Consensus 69 yyr~a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~--~ 145 (331)
T 3r7w_B 69 LFKSVGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGL--D 145 (331)
T ss_dssp HHTTCSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSC--S
T ss_pred hccCCCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcc--c
Confidence 99999999999999887 55555555332 22 37899999999999643210 012232222222222211 1
Q ss_pred CCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 211 QLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 211 ~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
...++++.+||++ . ++.+.|..|++.+.+
T Consensus 146 ~~~i~f~eTSAkd-~--------------nV~eAFs~iv~~li~ 174 (331)
T 3r7w_B 146 GVQVSFYLTSIFD-H--------------SIYEAFSRIVQKLIP 174 (331)
T ss_dssp CCCEEEECCCSSS-S--------------HHHHHHHHHHTTSST
T ss_pred ccCceEEEeccCC-C--------------cHHHHHHHHHHHHHh
Confidence 2467899999987 4 899999888877653
No 179
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.55 E-value=7.4e-15 Score=156.49 Aligned_cols=172 Identities=20% Similarity=0.152 Sum_probs=101.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhc---CCC------CCcc------cccccccccc----ccceeEeeeE-------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQC---GAD------IPHE------RAMDSISLER----ERGITIASKV------- 111 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~---g~~------~~~~------~v~D~~~~E~----ergiTi~~~~------- 111 (662)
.+...|+++|++|+|||||+++|+... +.. .... ...|....+. .++. +....
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~-i~~~~~~~~l~g 132 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAF-IRPVPSSGHLGG 132 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEE-EEEECC-----C
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCce-eecCccccccch
Confidence 356789999999999999999998642 110 0000 0011111100 1111 10000
Q ss_pred ---------EEEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCC
Q 006068 112 ---------TGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 112 ---------~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (662)
..+.++++.++||||||+.++... ....+|++|+|+|+..+...+.... ...++|.++|+||+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~~----~~~~~p~ivv~NK~D 205 (341)
T 2p67_A 133 ASQRARELMLLCEAAGYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIKK----GLMEVADLIVINKDD 205 (341)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCCH----HHHHHCSEEEECCCC
T ss_pred hHHHHHHHHHHhhccCCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHHH----hhhcccCEEEEECCC
Confidence 011256899999999999887654 4689999999999976643222111 123678999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 183 RPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 183 ~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+.+ ...+....+++.+.+..++........|++++||++|. |+++|++.|.++++
T Consensus 206 l~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~--------------gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 206 GDN--HTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKR--------------GIDEIWHAIIDFKT 260 (341)
T ss_dssp TTC--HHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTB--------------SHHHHHHHHHHHHH
T ss_pred CCC--hHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCC--------------CHHHHHHHHHHHHH
Confidence 954 22233333444444333332111113478999999998 99999999987664
No 180
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.55 E-value=4.2e-14 Score=138.83 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=105.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc-----
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF----- 132 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF----- 132 (662)
....+|+|+|++|+|||||+++|++.... .......|.|.... .+.+++ .+.+|||||+.++
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~----------~~~~~~~G~~~~~~--~~~~~~-~~~l~Dt~G~~~~~~~~~ 90 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSL----------ARTSKTPGRTQLIN--LFEVAD-GKRLVDLPGYGYAEVPEE 90 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-----------------------CCEE--EEEEET-TEEEEECCCCC------C
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCcc----------ccccCCCccceeeE--EEEecC-CEEEEECcCCcccccCHH
Confidence 34568999999999999999999754210 01112335544332 233444 7899999998542
Q ss_pred -----hHHHHHHH---hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 133 -----GGEVERVV---GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 133 -----~~ev~~~l---~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
...+..++ +.+|++++|+|+..+.......+...+...++|.+++.||+|+.. ..........+..++..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s--~~~~~~~~~~~~~~~~~ 168 (210)
T 1pui_A 91 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA--SGARKAQLNMVREAVLA 168 (210)
T ss_dssp CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC--HHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC--chhHHHHHHHHHHHHHh
Confidence 22233333 578999999999887766666666777788999999999999853 22112223344444443
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
.+ ..++++++||+++. |++++++.|.+.++.
T Consensus 169 ~~-----~~~~~~~~Sal~~~--------------~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 169 FN-----GDVQVETFSSLKKQ--------------GVDKLRQKLDTWFSE 199 (210)
T ss_dssp GC-----SCEEEEECBTTTTB--------------SHHHHHHHHHHHHC-
T ss_pred cC-----CCCceEEEeecCCC--------------CHHHHHHHHHHHHhh
Confidence 32 13568899999998 999999999887643
No 181
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.55 E-value=1.2e-13 Score=142.08 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=82.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch---HHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG---GEV 136 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~---~ev 136 (662)
..+|+++|++|+|||||+++|++.... ......+.|.......+.+++..++||||||+.+|. ...
T Consensus 39 ~~~I~vvG~~g~GKSSLin~l~~~~~~-----------~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~ 107 (270)
T 1h65_A 39 SLTILVMGKGGVGKSSTVNSIIGERVV-----------SISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMA 107 (270)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHTSCCS-----------CCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHhCCCcc-----------cccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHH
Confidence 579999999999999999999976321 112223455555556677889999999999998875 222
Q ss_pred HHHH------hhcceEEEEeeCCC-CchhhHHHHHHHHHHc-C----CCcEEEeccCCCCC
Q 006068 137 ERVV------GMVEGAILVVDAGE-GPLAQTKFVLAKALKY-G----LRPILLLNKVDRPA 185 (662)
Q Consensus 137 ~~~l------~~aD~aIlVVDa~~-G~~~qt~~~l~~~~~~-~----lp~IvviNKiD~~~ 185 (662)
...+ +.+|++|+|+|.+. ........+++.+.+. + .|+++|+||+|+..
T Consensus 108 ~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~ 168 (270)
T 1h65_A 108 LNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP 168 (270)
T ss_dssp HHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCC
T ss_pred HHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCC
Confidence 2222 26899999987654 3445556666666543 4 58999999999854
No 182
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.52 E-value=5.1e-14 Score=136.92 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=106.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCe--eEEEEeCCCCccchHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWREN--ELNMVDTPGHADFGGE 135 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~--~iniIDTPGh~dF~~e 135 (662)
+...+|+|+|+.|+|||||+++|+....... ....++.......+.+++. .+++|||||+..|...
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~------------~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~ 94 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLE------------SKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAI 94 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSCCCCS------------CCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCCCCCC------------CCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhh
Confidence 3467999999999999999999998633211 1122233333344555554 5667999999998887
Q ss_pred HHHHHhhcceEEEEeeCCCCchhh-HHHHHHHHHH---cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcC
Q 006068 136 VERVVGMVEGAILVVDAGEGPLAQ-TKFVLAKALK---YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQ 211 (662)
Q Consensus 136 v~~~l~~aD~aIlVVDa~~G~~~q-t~~~l~~~~~---~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~ 211 (662)
+...++.+|++++|+|..+....+ ...++..+.. .+.|+++++||+|+........ +....+....
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~~~----~~a~~l~~~~------ 164 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPT----DEARAFAEKN------ 164 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGCCSCH----HHHHHHHHHT------
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccCH----HHHHHHHHHc------
Confidence 888889999999999987643322 2234444433 3678899999999854221111 1222333332
Q ss_pred CCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 212 LDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 212 ~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++++.+||+++. |++++++.|.+.+
T Consensus 165 -~~~~ld~Sald~~--------------~v~~l~~~l~~~i 190 (191)
T 1oix_A 165 -GLSFIETSALDST--------------NVEAAFQTILTEI 190 (191)
T ss_dssp -TCEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred -CCEEEEEeCCCCC--------------CHHHHHHHHHHHh
Confidence 2468899999998 9999999987653
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.49 E-value=7.9e-14 Score=161.73 Aligned_cols=121 Identities=18% Similarity=0.213 Sum_probs=82.3
Q ss_pred eeEEEEeCCCCcc---chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHH-HHHHcCCCcEEEeccCCCCCCC---HH--
Q 006068 119 NELNMVDTPGHAD---FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLA-KALKYGLRPILLLNKVDRPAVS---EE-- 189 (662)
Q Consensus 119 ~~iniIDTPGh~d---F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~-~~~~~~lp~IvviNKiD~~~~~---~~-- 189 (662)
..++||||||+.+ +...+..+++.+|++|+|+|+..+........|. .+...+.|+++|+||+|+.... ++
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~ 253 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDV 253 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCH
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhH
Confidence 4799999999765 4456678889999999999999887777776664 4555688999999999985321 11
Q ss_pred -HHHHHHHHHHHH----HHhc-CCCC-cCCCccEEEcccc--------------cCccCCccCCCCCCCccchHHHHHHH
Q 006068 190 -RCDEVESLVFDL----FANL-GATD-EQLDFPVLYASAK--------------EGWASSTFTKDPPADVRNMSQLLDAI 248 (662)
Q Consensus 190 -~~~ei~~~v~~l----~~~~-g~~~-~~~~~Pvi~~SA~--------------~g~~~~~~~~~~~~~~~gv~~Lld~I 248 (662)
.+.++.+.+.+. +... +... .....+++++||+ +|. |+++|++.|
T Consensus 254 e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~--------------Gi~~L~~~L 319 (695)
T 2j69_A 254 EELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT--------------GFPKFMDSL 319 (695)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS--------------SHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc--------------CHHHHHHHH
Confidence 222223333222 2211 1000 0113479999999 555 999999999
Q ss_pred HhhCC
Q 006068 249 IRHVP 253 (662)
Q Consensus 249 ~~~lP 253 (662)
.+.+.
T Consensus 320 ~~~l~ 324 (695)
T 2j69_A 320 NTFLT 324 (695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 184
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.49 E-value=8.9e-14 Score=141.93 Aligned_cols=169 Identities=14% Similarity=0.122 Sum_probs=95.5
Q ss_pred CCccEEEEEeCC---------CCCHHHHHHHHHHh---cCCCCCcccc--ccccccccccc-e-eEe-eeEEEEEecCee
Q 006068 58 GRLRNVAVIAHV---------DHGKTTLMDRLLRQ---CGADIPHERA--MDSISLERERG-I-TIA-SKVTGISWRENE 120 (662)
Q Consensus 58 ~~irnIaIiGh~---------~~GKTTLv~~Ll~~---~g~~~~~~~v--~D~~~~E~erg-i-Ti~-~~~~~~~~~~~~ 120 (662)
....+|+|+|.+ |+|||||+++|+.. ........+. .|+....-... . ..+ .....+....+.
T Consensus 17 ~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 17 QGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp CSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred CceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 346799999999 99999999999973 2222222221 12211110000 0 000 000112224567
Q ss_pred EEEEe------CCCCccchH-----------------HHHHHHh---------------------hcceEEEEeeCCCC-
Q 006068 121 LNMVD------TPGHADFGG-----------------EVERVVG---------------------MVEGAILVVDAGEG- 155 (662)
Q Consensus 121 iniID------TPGh~dF~~-----------------ev~~~l~---------------------~aD~aIlVVDa~~G- 155 (662)
++||| |||...+.. ....+++ .+|++|+|+|+.+.
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 88888 555444332 1112222 58999999999874
Q ss_pred --chhhHHHHHHHHHH----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCc
Q 006068 156 --PLAQTKFVLAKALK----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASST 229 (662)
Q Consensus 156 --~~~qt~~~l~~~~~----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~ 229 (662)
.......++..+.. .++|+++|+||+|+.. ... + ++...+.... ..++++++||++|.
T Consensus 177 ~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~--~~~---v-~~~~~~~~~~------~~~~~~e~SAk~g~---- 240 (255)
T 3c5h_A 177 NRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV--ERY---I-RDAHTFALSK------KNLQVVETSARSNV---- 240 (255)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC--HHH---H-HHHHHHHHTS------SSCCEEECBTTTTB----
T ss_pred hhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc--cHH---H-HHHHHHHHhc------CCCeEEEEECCCCC----
Confidence 33333344444433 4799999999999853 211 1 3344443321 13579999999998
Q ss_pred cCCCCCCCccchHHHHHHHHhhC
Q 006068 230 FTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 230 ~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|++++++.|.+.+
T Consensus 241 ----------gv~elf~~l~~~l 253 (255)
T 3c5h_A 241 ----------NVDLAFSTLVQLI 253 (255)
T ss_dssp ----------SHHHHHHHHHHHH
T ss_pred ----------CHHHHHHHHHHHh
Confidence 9999999998754
No 185
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.46 E-value=7.5e-14 Score=135.01 Aligned_cols=114 Identities=21% Similarity=0.311 Sum_probs=76.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHH
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVE 137 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~ 137 (662)
....+|+++|+.|+|||||+++|+....... + .....+++ ..+.+..++||||||+.+|...+.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~----~-----~~~~~~~~-------~~~~~~~~~l~Dt~G~~~~~~~~~ 109 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT----V-----VSQEPLSA-------ADYDGSGVTLVDFPGHVKLRYKLS 109 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC----------------------------CCCCTTCSEEEETTCCBSSCCHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcc----c-----ccCCCcee-------eeecCCeEEEEECCCCchHHHHHH
Confidence 3467999999999999999999998632110 0 00111111 123678899999999999877777
Q ss_pred HHHhh----cceEEEEeeCCCCc--hhhHHHHHHHHHH-------cCCCcEEEeccCCCCCCC
Q 006068 138 RVVGM----VEGAILVVDAGEGP--LAQTKFVLAKALK-------YGLRPILLLNKVDRPAVS 187 (662)
Q Consensus 138 ~~l~~----aD~aIlVVDa~~G~--~~qt~~~l~~~~~-------~~lp~IvviNKiD~~~~~ 187 (662)
.++.. +|++|+|+|+.... ......++..+.. .++|+++|+||+|+....
T Consensus 110 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 110 DYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 77765 89999999997222 1222233333322 389999999999996543
No 186
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.45 E-value=3.8e-14 Score=153.78 Aligned_cols=82 Identities=21% Similarity=0.149 Sum_probs=46.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE---------------------ec---
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS---------------------WR--- 117 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~---------------------~~--- 117 (662)
+|+|+|++|+|||||+++|++.. . ......+.|+........ ++
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~-~-----------~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~ 69 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD-V-----------EIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLA 69 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--------------------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHCCC-C-----------cccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcc
Confidence 79999999999999999999763 1 111222333332222211 12
Q ss_pred CeeEEEEeCCCCccchH-------HHHHHHhhcceEEEEeeCCCC
Q 006068 118 ENELNMVDTPGHADFGG-------EVERVVGMVEGAILVVDAGEG 155 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~-------ev~~~l~~aD~aIlVVDa~~G 155 (662)
...++||||||+.++.. ....+++.+|++++|+|+.++
T Consensus 70 ~~~i~lvDtpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 70 LIPVKMVDVAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp EEEEEEEECC---------------CCCSSTTCSEEEEEEETTCC
T ss_pred eEEEEEEECCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 35799999999865321 112346889999999999875
No 187
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.42 E-value=1.9e-13 Score=146.24 Aligned_cols=170 Identities=17% Similarity=0.141 Sum_probs=101.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCC------cccc---------------------ccccccc--------c--
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP------HERA---------------------MDSISLE--------R-- 101 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~------~~~v---------------------~D~~~~E--------~-- 101 (662)
...+|+|+|.+++|||||+++|++....... .... .+..... +
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 3568999999999999999999876532110 0100 1111000 0
Q ss_pred --ccceeEeeeEEEEEec-CeeEEEEeCCCCcc-------------chHHHHHHHhhcc-eEEEEeeCCCCchhhHHH-H
Q 006068 102 --ERGITIASKVTGISWR-ENELNMVDTPGHAD-------------FGGEVERVVGMVE-GAILVVDAGEGPLAQTKF-V 163 (662)
Q Consensus 102 --ergiTi~~~~~~~~~~-~~~iniIDTPGh~d-------------F~~ev~~~l~~aD-~aIlVVDa~~G~~~qt~~-~ 163 (662)
..|+........+... ...++||||||..+ +...+..+++.++ .+++|+|+..+...+... +
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i 189 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKV 189 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHH
Confidence 0333332222333333 57899999999643 3445556665555 555567787777766653 6
Q ss_pred HHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHH
Q 006068 164 LAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (662)
Q Consensus 164 l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~ 243 (662)
++.+...+.|+|+|+||+|+.+..... . +++.........-.++++++||++|. |+++
T Consensus 190 ~~~~~~~~~~~i~V~NK~Dl~~~~~~~-~-------~~~~~~~~~l~~~~~~v~~~SA~~~~--------------~i~~ 247 (353)
T 2x2e_A 190 AKEVDPQGQRTIGVITKLDLMDEGTDA-R-------DVLENKLLPLRRGYIGVVNRSQKDID--------------GKKD 247 (353)
T ss_dssp HHHHCTTCTTEEEEEECGGGSCTTCCC-H-------HHHTTCSSCCTTCEEECCCCCHHHHH--------------TTCC
T ss_pred HHHhCcCCCceEEEeccccccCcchhH-H-------HHHhCCcccccCCceEEEeCCccccc--------------cccc
Confidence 677766789999999999996432210 1 11111000000011468999999998 6777
Q ss_pred HHHHHHh
Q 006068 244 LLDAIIR 250 (662)
Q Consensus 244 Lld~I~~ 250 (662)
|++++.+
T Consensus 248 l~~~l~~ 254 (353)
T 2x2e_A 248 ITAALAA 254 (353)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 188
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.41 E-value=1.3e-12 Score=142.22 Aligned_cols=156 Identities=22% Similarity=0.290 Sum_probs=105.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCCcc-------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHAD------- 131 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh~d------- 131 (662)
...|+|+|++|+|||||+++|+.... ........|+......+.+++ ..++++||||+.+
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Lsg~~~------------~i~~~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~~ 224 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMTRAHP------------KIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGKG 224 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHCSSCC------------EECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSCC
T ss_pred CCEEEEECCCCCcHHHHHHHHHcCCc------------cccCcccceecceeeEEEecCcceEEEEeccccccchhhhhh
Confidence 45799999999999999999976521 111122334444455566665 7899999999854
Q ss_pred chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH-----cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK-----YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 132 F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~-----~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
+.....+.+..+|.+|+|+|+......+...++++... ...|.|+++||+|.... . ..+.+.+.+...+
T Consensus 225 L~~~fl~~~era~~lL~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~----~~~~l~~~l~~~g 298 (416)
T 1udx_A 225 LGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--E----AVKALADALAREG 298 (416)
T ss_dssp SCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--H----HHHHHHHHHHTTT
T ss_pred hhHHHHHHHHHHHhhhEEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--H----HHHHHHHHHHhcC
Confidence 33344556677999999999862222233333333333 36899999999998642 2 2333444443322
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++++++||+++. |+++|++.|.+.+..
T Consensus 299 -------~~vi~iSA~~g~--------------gi~eL~~~i~~~l~~ 325 (416)
T 1udx_A 299 -------LAVLPVSALTGA--------------GLPALKEALHALVRS 325 (416)
T ss_dssp -------SCEEECCTTTCT--------------THHHHHHHHHHHHHT
T ss_pred -------CeEEEEECCCcc--------------CHHHHHHHHHHHHHh
Confidence 469999999998 999999999887754
No 189
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.41 E-value=6.6e-13 Score=149.91 Aligned_cols=143 Identities=19% Similarity=0.165 Sum_probs=94.5
Q ss_pred CCCCCCccEEEEEeCCCCCHHHHHHHHHHhcCC---CCCc-cc-----cccccccccccceeE-----------------
Q 006068 54 TLDPGRLRNVAVIAHVDHGKTTLMDRLLRQCGA---DIPH-ER-----AMDSISLERERGITI----------------- 107 (662)
Q Consensus 54 ~~~~~~irnIaIiGh~~~GKTTLv~~Ll~~~g~---~~~~-~~-----v~D~~~~E~ergiTi----------------- 107 (662)
.......++|+|+|++|+|||||+|+|++.... .... .+ +......+...|.++
T Consensus 59 ~~~~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~ 138 (550)
T 2qpt_A 59 DADFDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNT 138 (550)
T ss_dssp STTTSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------C
T ss_pred cccccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhccc
Confidence 334456789999999999999999999987532 1110 11 000000000001110
Q ss_pred -eeeEEEEEecC---eeEEEEeCCCCcc-----------chHHHHHHHhhcceEEEEeeCCC-CchhhHHHHHHHHHHcC
Q 006068 108 -ASKVTGISWRE---NELNMVDTPGHAD-----------FGGEVERVVGMVEGAILVVDAGE-GPLAQTKFVLAKALKYG 171 (662)
Q Consensus 108 -~~~~~~~~~~~---~~iniIDTPGh~d-----------F~~ev~~~l~~aD~aIlVVDa~~-G~~~qt~~~l~~~~~~~ 171 (662)
......+.+.+ ..++||||||+.+ |...+..++..+|++|+|+|+.+ +...++..++..+...+
T Consensus 139 ~~~~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~ 218 (550)
T 2qpt_A 139 FLNRFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHE 218 (550)
T ss_dssp CCTTEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCG
T ss_pred ccccceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcC
Confidence 01111222222 4799999999986 77788889999999999999987 67888888888888888
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHHHH
Q 006068 172 LRPILLLNKVDRPAVSEERCDEVESLV 198 (662)
Q Consensus 172 lp~IvviNKiD~~~~~~~~~~ei~~~v 198 (662)
.|+++|+||+|+.. ...+.++...+
T Consensus 219 ~pvilVlNK~Dl~~--~~el~~~~~~l 243 (550)
T 2qpt_A 219 DKIRVVLNKADMVE--TQQLMRVYGAL 243 (550)
T ss_dssp GGEEEEEECGGGSC--HHHHHHHHHHH
T ss_pred CCEEEEEECCCccC--HHHHHHHHHHh
Confidence 99999999999953 44444444443
No 190
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.39 E-value=1.8e-13 Score=135.67 Aligned_cols=165 Identities=13% Similarity=0.189 Sum_probs=98.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc-------ccccccccccceeEee-eE---EEE----------Eec
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA-------MDSISLERERGITIAS-KV---TGI----------SWR 117 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v-------~D~~~~E~ergiTi~~-~~---~~~----------~~~ 117 (662)
+.++|+|+|++|+|||||+++|+...+.......+ .|....+ ..|+++.. .. ..+ .+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVR-RFGIKAEAISTGKECHLDAHMIYHRLKKFS 107 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHH-TTTCEEEECCCTTCSSCCHHHHHTTGGGGT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHH-hCCCcEEEecCCceeecccHHHHHHHHhcC
Confidence 46799999999999999999999875432110111 1111111 11333111 00 011 345
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHH
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESL 197 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~ 197 (662)
+..+.||||||+.+.... .-...+.+++|+|+..+... .+..+...+.|.++|+||+|+.........++.
T Consensus 108 ~~d~iiidt~G~~~~~~~---~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~~~~~~~~~~-- 178 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPVD---FDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEAVGADVEKMK-- 178 (221)
T ss_dssp TCSEEEEEEEEBSSGGGG---CCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHHHTCCHHHHH--
T ss_pred CCCEEEEeCCCCCCCCch---hccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcchhhHHHHHH--
Confidence 678999999995221110 00246789999999887432 233344467999999999998431000112222
Q ss_pred HHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 198 VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 198 v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+.+..++. .+|++++||++|. |+++|+++|.+.+..
T Consensus 179 --~~~~~~~~-----~~~i~~~Sa~~g~--------------gi~~l~~~l~~~~~~ 214 (221)
T 2wsm_A 179 --ADAKLINP-----RAKIIEMDLKTGK--------------GFEEWIDFLRGILNV 214 (221)
T ss_dssp --HHHHHHCT-----TSEEEECBTTTTB--------------THHHHHHHHHHHHC-
T ss_pred --HHHHHhCC-----CCeEEEeecCCCC--------------CHHHHHHHHHHHHHH
Confidence 22333221 2579999999999 999999999887644
No 191
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.39 E-value=1.8e-12 Score=138.39 Aligned_cols=115 Identities=15% Similarity=0.136 Sum_probs=67.8
Q ss_pred ecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHH
Q 006068 116 WRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVE 195 (662)
Q Consensus 116 ~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~ 195 (662)
+.++.+.|+||||..+.. ......+|.+++|+|+..+...+.. .. .-...|.++|+||+|+.. ........
T Consensus 164 ~~~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~i---~~-~il~~~~ivVlNK~Dl~~--~~~~~~~~ 234 (349)
T 2www_A 164 GAGYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQGI---KR-GIIEMADLVAVTKSDGDL--IVPARRIQ 234 (349)
T ss_dssp HTTCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG--HHHHHHHH
T ss_pred cCCCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHHh---HH-HHHhcCCEEEEeeecCCC--chhHHHHH
Confidence 467899999999965322 3346789999999999876432211 11 124679999999999843 21112222
Q ss_pred HHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 196 ~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
.++...+............|++++||++|. |+++|+++|.++++
T Consensus 235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~--------------Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 235 AEYVSALKLLRKRSQVWKPKVIRISARSGE--------------GISEMWDKMKDFQD 278 (349)
T ss_dssp HHHHHHHTTCC-----CCCEEEECCTTTCT--------------THHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccCCCceEEEEecCCCC--------------CHHHHHHHHHHHHH
Confidence 233222222111001113578999999998 99999999987653
No 192
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.31 E-value=3.1e-12 Score=130.25 Aligned_cols=172 Identities=23% Similarity=0.175 Sum_probs=99.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccccccccccc----ce------eEe--------ee--EE------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERER----GI------TIA--------SK--VT------ 112 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~er----gi------Ti~--------~~--~~------ 112 (662)
+...+++.|..|+|||||+++|..... ......+.|.++..... +. +.. .. ..
T Consensus 13 ~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (262)
T 1yrb_A 13 ASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRL 91 (262)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHH
Confidence 467899999999999999999986543 22222222322210000 00 000 00 00
Q ss_pred ---------EE-Ee-cCeeEEEEeCCCCccchHH------HHHHHhhcceEEEEeeCCCCchhhHHH-H----HHHHHHc
Q 006068 113 ---------GI-SW-RENELNMVDTPGHADFGGE------VERVVGMVEGAILVVDAGEGPLAQTKF-V----LAKALKY 170 (662)
Q Consensus 113 ---------~~-~~-~~~~iniIDTPGh~dF~~e------v~~~l~~aD~aIlVVDa~~G~~~qt~~-~----l~~~~~~ 170 (662)
.+ .+ .++.+.||||||+.++... +..++.. +.+|+|+|+.......... . +......
T Consensus 92 ~~~~~~l~~~l~~~~~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~ 170 (262)
T 1yrb_A 92 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRL 170 (262)
T ss_dssp HTTHHHHHHHHHHHHHHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHhhcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhccc
Confidence 00 00 2468999999999876322 2234445 7889999987665544322 1 1223445
Q ss_pred CCCcEEEeccCCCCCCCHHHHHHHHH---HHHHH---------------------HHhcCCCCcCCCccEEEcccccCcc
Q 006068 171 GLRPILLLNKVDRPAVSEERCDEVES---LVFDL---------------------FANLGATDEQLDFPVLYASAKEGWA 226 (662)
Q Consensus 171 ~lp~IvviNKiD~~~~~~~~~~ei~~---~v~~l---------------------~~~~g~~~~~~~~Pvi~~SA~~g~~ 226 (662)
++|.++|+||+|+... ....++.+ +...+ +..++. ..+++++||++|.
T Consensus 171 ~~p~~iv~NK~D~~~~--~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~SA~~~~- 242 (262)
T 1yrb_A 171 GATTIPALNKVDLLSE--EEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLP-----PVRVLYLSAKTRE- 242 (262)
T ss_dssp TSCEEEEECCGGGCCH--HHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSC-----CCCCEECCTTTCT-
T ss_pred CCCeEEEEeccccccc--ccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcC-----cccceEEEecCcc-
Confidence 8999999999998542 21111211 11111 122221 2368999999998
Q ss_pred CCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 227 SSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 227 ~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
|+++|+++|.+.++
T Consensus 243 -------------gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 243 -------------GFEDLETLAYEHYC 256 (262)
T ss_dssp -------------THHHHHHHHHHHHH
T ss_pred -------------cHHHHHHHHHHHhc
Confidence 99999999987764
No 193
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.31 E-value=3.4e-12 Score=136.79 Aligned_cols=156 Identities=15% Similarity=0.180 Sum_probs=93.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc------------------------------cccccc---------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA------------------------------MDSISL--------- 99 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v------------------------------~D~~~~--------- 99 (662)
.++.|+|+|+.|+|||||+++|++..........+ .|+...
T Consensus 33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 45699999999999999999999864311100000 000000
Q ss_pred ---ccccceeEeeeEEEEEe-cCeeEEEEeCCCCccc-------------hHHHHHHHhhcceEEEEeeCCC-Cch-hhH
Q 006068 100 ---ERERGITIASKVTGISW-RENELNMVDTPGHADF-------------GGEVERVVGMVEGAILVVDAGE-GPL-AQT 160 (662)
Q Consensus 100 ---E~ergiTi~~~~~~~~~-~~~~iniIDTPGh~dF-------------~~ev~~~l~~aD~aIlVVDa~~-G~~-~qt 160 (662)
....+++.......+.. ....++||||||+.++ ...+..+++.+|++|+|+|+.. ... ...
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~ 192 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDA 192 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHH
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHH
Confidence 00112221111222221 3568999999999887 5677788999999999998643 222 233
Q ss_pred HHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCc
Q 006068 161 KFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGW 225 (662)
Q Consensus 161 ~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~ 225 (662)
..+++.+...+.|+|+|+||+|+....... .+.+... ...+..|++++|++++.
T Consensus 193 ~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~~--------~~~~~~~---~~~~~~~~~~v~~~s~~ 246 (360)
T 3t34_A 193 IKISREVDPSGDRTFGVLTKIDLMDKGTDA--------VEILEGR---SFKLKYPWVGVVNRSQA 246 (360)
T ss_dssp HHHHHHSCTTCTTEEEEEECGGGCCTTCCS--------HHHHTTS---SSCCSSCCEEECCCCHH
T ss_pred HHHHHHhcccCCCEEEEEeCCccCCCcccH--------HHHHcCc---cccccCCeEEEEECChH
Confidence 444555555688999999999986432211 1111111 12234678889988876
No 194
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.29 E-value=9.2e-12 Score=143.88 Aligned_cols=170 Identities=16% Similarity=0.110 Sum_probs=106.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCC---cc------------------------cccccccc------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIP---HE------------------------RAMDSISL------------ 99 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~---~~------------------------~v~D~~~~------------ 99 (662)
..+.|+|+|..++|||||+|+|++....... .+ .+.|....
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4679999999999999999999986431000 00 00011000
Q ss_pred ccccceeEeeeEEEEEec-CeeEEEEeCCCCcc-------------chHHHHHHH-hhcceEEEEeeCCCCchhhHH-HH
Q 006068 100 ERERGITIASKVTGISWR-ENELNMVDTPGHAD-------------FGGEVERVV-GMVEGAILVVDAGEGPLAQTK-FV 163 (662)
Q Consensus 100 E~ergiTi~~~~~~~~~~-~~~iniIDTPGh~d-------------F~~ev~~~l-~~aD~aIlVVDa~~G~~~qt~-~~ 163 (662)
....+++-......+.+. ...+.||||||... +...+..++ ..+|.+|+|+|+..+...+.. .+
T Consensus 130 g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~l 209 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 209 (772)
T ss_dssp CSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHH
T ss_pred CCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHH
Confidence 011233333333333333 45799999999654 223344444 468999999999998887776 68
Q ss_pred HHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHH
Q 006068 164 LAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQ 243 (662)
Q Consensus 164 l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~ 243 (662)
+..+...+.|+|+|+||+|+....... . ++....-.....-..|++++||++|. |+++
T Consensus 210 l~~L~~~g~pvIlVlNKiDlv~~~~~~-~-------~il~~~~~~l~lg~~~VV~iSA~~G~--------------Gvde 267 (772)
T 3zvr_A 210 AKEVDPQGQRTIGVITKLDLMDEGTDA-R-------DVLENKLLPLRRGYIGVVNRSQKDID--------------GKKD 267 (772)
T ss_dssp HHHHCTTCSSEEEEEECTTSSCTTCCS-H-------HHHTTCSSCCSSCEEECCCCCCEESS--------------SSEE
T ss_pred HHHHHhcCCCEEEEEeCcccCCcchhh-H-------HHHHHHhhhhhccCCceEEecccccc--------------cchh
Confidence 888888899999999999996432211 1 11110000000012478999999998 7777
Q ss_pred HHHHHHh
Q 006068 244 LLDAIIR 250 (662)
Q Consensus 244 Lld~I~~ 250 (662)
|+++|.+
T Consensus 268 L~eaI~~ 274 (772)
T 3zvr_A 268 ITAALAA 274 (772)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877765
No 195
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.28 E-value=3.8e-11 Score=128.72 Aligned_cols=113 Identities=18% Similarity=0.255 Sum_probs=87.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc-------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD------- 131 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d------- 131 (662)
-..+|+|+|.+|+|||||+|+|++. ........+.|++.....+.+.+.++.|+||||..+
T Consensus 71 g~a~V~ivG~PNvGKSTL~n~Lt~~------------~~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~ 138 (376)
T 4a9a_A 71 GVASVGFVGFPSVGKSTLLSKLTGT------------ESEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRG 138 (376)
T ss_dssp SSEEEEEECCCCHHHHHHHHHHHSB------------CCCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----C
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCC------------CCcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhH
Confidence 3568999999999999999999875 223345568899999999999999999999999754
Q ss_pred chHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc-----CCCcEEEeccCCCC
Q 006068 132 FGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-----GLRPILLLNKVDRP 184 (662)
Q Consensus 132 F~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~-----~lp~IvviNKiD~~ 184 (662)
....+...++.||.+++|+|+.+.. .+...+...+... ..|.++++||+|+.
T Consensus 139 ~g~~~l~~i~~ad~il~vvD~~~p~-~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 139 RGKQVIAVARTCNLLFIILDVNKPL-HHKQIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTSHH-HHHHHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred HHHHHHHHHHhcCccccccccCccH-HHHHHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 2356677889999999999998743 2333333444443 45889999999974
No 196
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.18 E-value=7.3e-11 Score=125.84 Aligned_cols=82 Identities=16% Similarity=0.120 Sum_probs=57.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-----------------eeEEE
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NELNM 123 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-----------------~~ini 123 (662)
.+|+|+|.+|+|||||+++|+.... ......+.|+......+.+.+ ..++|
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~------------~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~l 70 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGI------------EAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEF 70 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------------------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC------------cccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEE
Confidence 4799999999999999999998631 111222334333333344433 57999
Q ss_pred EeCCCCccch-------HHHHHHHhhcceEEEEeeCCC
Q 006068 124 VDTPGHADFG-------GEVERVVGMVEGAILVVDAGE 154 (662)
Q Consensus 124 IDTPGh~dF~-------~ev~~~l~~aD~aIlVVDa~~ 154 (662)
|||||+.++. ......++.+|++++|+|+.+
T Consensus 71 vDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 71 VDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp EECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred EECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 9999998764 234567899999999999876
No 197
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.18 E-value=1.2e-10 Score=126.68 Aligned_cols=164 Identities=16% Similarity=0.189 Sum_probs=81.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEE--Eec--CeeEEEEeCCCCccchH-
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI--SWR--ENELNMVDTPGHADFGG- 134 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~--~~~--~~~iniIDTPGh~dF~~- 134 (662)
..+|+|+|++|+|||||++.|++........... +.. . ..|+......+ ... ...+++|||||+.++..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~-~~~---~--~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~ 104 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGP-SHR---I--KKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN 104 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSC-C----------CCEEEEEECC------CEEEEEEECC--------
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCc-ccC---C--ccceeeeeEEEEEecCCcccceeeeechhhhhhccc
Confidence 3689999999999999999998764311100000 000 0 01111111111 112 24789999999877531
Q ss_pred -----HH--------HHHH-----------hh--cceEEEEeeCC-CCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCC
Q 006068 135 -----EV--------ERVV-----------GM--VEGAILVVDAG-EGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVS 187 (662)
Q Consensus 135 -----ev--------~~~l-----------~~--aD~aIlVVDa~-~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~ 187 (662)
.+ ..++ .. ++.+|++++.+ .+..+.+..+++.+.. ++|+|+|+||+|+. .
T Consensus 105 ~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll--~ 181 (418)
T 2qag_C 105 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTL--T 181 (418)
T ss_dssp ---CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSS--C
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCc--c
Confidence 11 1111 11 33456666665 6888888777777654 89999999999984 3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 188 EERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 188 ~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
...+....+++.+.+...+ ++++.+||+++. ++..++..+.+.+|
T Consensus 182 ~~ev~~~k~~i~~~~~~~~-------i~~~~~sa~~~~--------------~v~~~~~~l~~~iP 226 (418)
T 2qag_C 182 PEECQQFKKQIMKEIQEHK-------IKIYEFPETDDE--------------EENKLVKKIKDRLP 226 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHT-------CCCCCCC-------------------------------CC
T ss_pred HHHHHHHHHHHHHHHHHcC-------CeEEeCCCCCCc--------------CHHHHHHHHHhhCC
Confidence 4444545566666665554 457889999887 77777777766554
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.15 E-value=1.8e-10 Score=120.37 Aligned_cols=151 Identities=16% Similarity=0.182 Sum_probs=77.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh-cCCCCCccccccccccccccceeEeeeEEEEEe--cCeeEEEEeCCCC-------
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ-CGADIPHERAMDSISLERERGITIASKVTGISW--RENELNMVDTPGH------- 129 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~-~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~--~~~~iniIDTPGh------- 129 (662)
..+|+|+|+.|+|||||+++|+.. ...... -.+ +..+. ..++.+......+.. ....+++|||||+
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~-~g~~~--~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~ 93 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERV-ISG-AAEKI--ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCR 93 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC---------
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCC-ccc-CCccc--CCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcH
Confidence 468999999999999999998754 111110 000 00000 011111111111221 2357999999998
Q ss_pred ccchHHHH-------HHHhhcce-------------EEEEeeCCC-CchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCH
Q 006068 130 ADFGGEVE-------RVVGMVEG-------------AILVVDAGE-GPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSE 188 (662)
Q Consensus 130 ~dF~~ev~-------~~l~~aD~-------------aIlVVDa~~-G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~ 188 (662)
..|...+. .+++.+.+ ++++++... +..+....+++.+. .+.++++|+||.|+.. .
T Consensus 94 e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~--~ 170 (301)
T 2qnr_A 94 DCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLT--L 170 (301)
T ss_dssp --CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSC--H
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCC--H
Confidence 44443333 44444332 555555443 57777766665543 3678999999999853 3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccC
Q 006068 189 ERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEG 224 (662)
Q Consensus 189 ~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g 224 (662)
.......+++.+++...+ ++++++||++|
T Consensus 171 ~e~~~~~~~~~~~~~~~~-------~~~~e~Sa~~~ 199 (301)
T 2qnr_A 171 KERERLKKRILDEIEEHN-------IKIYHLPDAES 199 (301)
T ss_dssp HHHHHHHHHHHHHHHHTT-------CCCCCCC----
T ss_pred HHHHHHHHHHHHHHHHcC-------CeEEecCCccc
Confidence 233333455566655554 45899999988
No 199
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.13 E-value=4.7e-11 Score=132.75 Aligned_cols=172 Identities=16% Similarity=0.109 Sum_probs=97.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccccc-----------ccccccceeEeeeEE-------------E
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI-----------SLERERGITIASKVT-------------G 113 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~-----------~~E~ergiTi~~~~~-------------~ 113 (662)
.+.++|+|+|++|+|||||+++|+...........+.|.+ ......++++..... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 4578999999999999999999996532111111111110 111223444332111 1
Q ss_pred EEecCeeEEEEeCCCCcc----chHHHHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCCCC
Q 006068 114 ISWRENELNMVDTPGHAD----FGGEVERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRPAV 186 (662)
Q Consensus 114 ~~~~~~~iniIDTPGh~d----F~~ev~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~~~ 186 (662)
+.++++.+.||||||... +..++..+.. .+|.+++|+|+..|.. ....+....+ .+|+ ++|+||+|....
T Consensus 179 ~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~~ 255 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHAK 255 (504)
T ss_dssp HHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCCC
T ss_pred HHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCccccc
Confidence 123688999999999763 4444443333 6899999999998753 3333333333 2785 899999998632
Q ss_pred CHHHHHHHHHHHHHHHH-h---cCC----CCcCCCccEEEcccccCccCCccCCCCCCCccc-hHHHHHHHHhh
Q 006068 187 SEERCDEVESLVFDLFA-N---LGA----TDEQLDFPVLYASAKEGWASSTFTKDPPADVRN-MSQLLDAIIRH 251 (662)
Q Consensus 187 ~~~~~~ei~~~v~~l~~-~---~g~----~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~g-v~~Lld~I~~~ 251 (662)
......+. ..+. . +|. .+-....|.+++|+..|. | +..|++++.+.
T Consensus 256 -~g~~l~~~----~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~--------------Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 256 -GGGALSAV----AATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGM--------------GDIEGLIDKVNEL 310 (504)
T ss_dssp -CTHHHHHH----HHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTT--------------TTTTTTHHHHTTT
T ss_pred -hHHHHHHH----HHhCCCeEEeccccchhhhhccCcceeeehhcCC--------------CcHHHHHHHHHHH
Confidence 22111111 1110 0 010 000011355677888887 7 99999999766
No 200
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.11 E-value=4.1e-10 Score=120.69 Aligned_cols=82 Identities=20% Similarity=0.172 Sum_probs=56.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEE---------------------ecCe
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGIS---------------------WREN 119 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~---------------------~~~~ 119 (662)
.+|+|+|.+|+|||||+++|++..... ....+.|+......+. +.+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~v------------~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~ 69 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANALA------------ANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPT 69 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTTC------------SSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCcc------------cCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCc
Confidence 479999999999999999999873110 0111112222211111 2346
Q ss_pred eEEEEeCCCCccc-------hHHHHHHHhhcceEEEEeeCCC
Q 006068 120 ELNMVDTPGHADF-------GGEVERVVGMVEGAILVVDAGE 154 (662)
Q Consensus 120 ~iniIDTPGh~dF-------~~ev~~~l~~aD~aIlVVDa~~ 154 (662)
.++||||||+.++ .......++.+|++++|+|+.+
T Consensus 70 ~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 70 HVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp EEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred eEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 7999999998775 3456678899999999999976
No 201
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.10 E-value=5.8e-11 Score=126.06 Aligned_cols=116 Identities=19% Similarity=0.190 Sum_probs=68.3
Q ss_pred ecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHH
Q 006068 116 WRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVE 195 (662)
Q Consensus 116 ~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~ 195 (662)
+.++.+.||||||..+-.. .....+|.+++|+|+..+...+. +.... ..++.++++||+|+... ........
T Consensus 145 ~~~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~~~--i~~~i--~~~~~ivvlNK~Dl~~~-~~~s~~~~ 216 (337)
T 2qm8_A 145 AAGFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDELQG--IKKGI--FELADMIAVNKADDGDG-ERRASAAA 216 (337)
T ss_dssp HTTCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTTH--HHHCSEEEEECCSTTCC-HHHHHHHH
T ss_pred cCCCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccHHH--HHHHH--hccccEEEEEchhccCc-hhHHHHHH
Confidence 4688999999999765322 34578999999999865422110 00001 13477889999997432 11112222
Q ss_pred HHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 196 SLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 196 ~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+++...+..+.........|++++||++|. |+++|++.|.++.+
T Consensus 217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~--------------gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 217 SEYRAALHILTPPSATWTPPVVTISGLHGK--------------GLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHHHTTBCCSBTTBCCCEEEEBTTTTB--------------SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccccCCCCCEEEEeCCCCC--------------CHHHHHHHHHHHHH
Confidence 333222222221000112468999999998 99999999987654
No 202
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.02 E-value=3.3e-10 Score=112.32 Aligned_cols=164 Identities=15% Similarity=0.165 Sum_probs=90.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccc-cc------cccccc--cceeEeee-EEE------------EEe
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM-DS------ISLERE--RGITIASK-VTG------------ISW 116 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~-D~------~~~E~e--rgiTi~~~-~~~------------~~~ 116 (662)
+.++|+|+|++|+|||||+++|+..........++. |. ...+.. ..+.+... ... +.+
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 467999999999999999999998754332111111 11 000000 01111100 000 001
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHH
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVES 196 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~ 196 (662)
.+..+.++||+|....... .-...+..+.|+|+..+..... ......+.|.++|+||+|+....... .+
T Consensus 117 ~~~d~~~id~~g~i~~~~s---~~~~~~~~~~v~~~~~~~~~~~----~~~~~~~~~~iiv~NK~Dl~~~~~~~----~~ 185 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICPAD---FDLGTHKRIVVISTTEGDDTIE----KHPGIMKTADLIVINKIDLADAVGAD----IK 185 (226)
T ss_dssp GGCSEEEEECCSCSSGGGG---CCCSCSEEEEEEEGGGCTTTTT----TCHHHHTTCSEEEEECGGGHHHHTCC----HH
T ss_pred CCCCEEEEeCCCCccCcch---hhhccCcEEEEEecCcchhhHh----hhhhHhhcCCEEEEeccccCchhHHH----HH
Confidence 2347999999994211000 0123456778888654432221 11223578999999999984310001 12
Q ss_pred HHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 197 LVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 197 ~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
++.+.+..++. ..|++++||++|. |+++|++.|.+.+
T Consensus 186 ~~~~~~~~~~~-----~~~~~~~Sa~~g~--------------gv~~l~~~l~~~~ 222 (226)
T 2hf9_A 186 KMENDAKRINP-----DAEVVLLSLKTME--------------GFDKVLEFIEKSV 222 (226)
T ss_dssp HHHHHHHHHCT-----TSEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-----CCeEEEEEecCCC--------------CHHHHHHHHHHHH
Confidence 22333333221 2579999999999 9999999987654
No 203
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.94 E-value=9.6e-10 Score=116.21 Aligned_cols=136 Identities=15% Similarity=0.182 Sum_probs=93.9
Q ss_pred cceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCC-----------CchhhHHHHHHHHHH--
Q 006068 103 RGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGE-----------GPLAQTKFVLAKALK-- 169 (662)
Q Consensus 103 rgiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~-----------G~~~qt~~~l~~~~~-- 169 (662)
+..|+......+.+++.++.||||+|+..|...+..+++.++++|+|+|.++ .-+.....+|..+..
T Consensus 145 ~~~TiGi~~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~ 224 (340)
T 4fid_A 145 RTKTTGIHEYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNE 224 (340)
T ss_dssp CCCCCSCEEEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCG
T ss_pred ccceeeeEEEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhh
Confidence 4445666777788889999999999999999999999999999999999862 223445556666554
Q ss_pred --cCCCcEEEeccCCCCCCCH---------------HHHHHHHHHHHHHH------HhcCCCCc----------CCCccE
Q 006068 170 --YGLRPILLLNKVDRPAVSE---------------ERCDEVESLVFDLF------ANLGATDE----------QLDFPV 216 (662)
Q Consensus 170 --~~lp~IvviNKiD~~~~~~---------------~~~~ei~~~v~~l~------~~~g~~~~----------~~~~Pv 216 (662)
.++|+|+|+||+|+..... ...++..+-+.+.| ..+..... ...+.+
T Consensus 225 ~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~ 304 (340)
T 4fid_A 225 FLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYT 304 (340)
T ss_dssp GGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEE
T ss_pred ccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEE
Confidence 3689999999999742100 01233444444445 32222111 024678
Q ss_pred EEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 217 LYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 217 i~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.++||+++. +++.+|+.+.+.+
T Consensus 305 h~TsA~dt~--------------nv~~vF~~v~~~I 326 (340)
T 4fid_A 305 NPTNATDGS--------------NIKRVFMLAVDVI 326 (340)
T ss_dssp EEECTTCHH--------------HHHHHHHHHHHHH
T ss_pred EEEEeeCcH--------------HHHHHHHHHHHHH
Confidence 899999998 8888888876643
No 204
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.90 E-value=1.3e-09 Score=116.29 Aligned_cols=135 Identities=16% Similarity=0.170 Sum_probs=95.5
Q ss_pred ceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-----------chhhHHHHHHHHHH---
Q 006068 104 GITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALK--- 169 (662)
Q Consensus 104 giTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-----------~~~qt~~~l~~~~~--- 169 (662)
..|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|..+- -+.....++..+..
T Consensus 178 ~~T~Gi~~~~~~~~~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~ 257 (353)
T 1cip_A 178 VKTTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKW 257 (353)
T ss_dssp CCCCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGG
T ss_pred CceeceEEEEEeeCCeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCcc
Confidence 3455555667888899999999999999999999999999999999998762 23445556666554
Q ss_pred -cCCCcEEEeccCCCCCCC---------------HHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCC
Q 006068 170 -YGLRPILLLNKVDRPAVS---------------EERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKD 233 (662)
Q Consensus 170 -~~lp~IvviNKiD~~~~~---------------~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~ 233 (662)
.++|+|+|+||+|+.... .....+..+-+...|..+........++++++||++|.
T Consensus 258 ~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~-------- 329 (353)
T 1cip_A 258 FTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTK-------- 329 (353)
T ss_dssp GTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHH--------
T ss_pred ccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCch--------
Confidence 368999999999983100 01123333333334444432212235789999999998
Q ss_pred CCCCccchHHHHHHHHhhC
Q 006068 234 PPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 234 ~~~~~~gv~~Lld~I~~~l 252 (662)
|+..+|+++.+.+
T Consensus 330 ------nV~~vF~~v~~~i 342 (353)
T 1cip_A 330 ------NVQFVFDAVTDVI 342 (353)
T ss_dssp ------HHHHHHHHHHHHH
T ss_pred ------hHHHHHHHHHHHH
Confidence 9999999887654
No 205
>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}
Probab=98.84 E-value=5.2e-09 Score=102.99 Aligned_cols=85 Identities=16% Similarity=0.343 Sum_probs=70.6
Q ss_pred CCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE
Q 006068 259 LDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV 338 (662)
Q Consensus 259 ~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai 338 (662)
.++||+++|..++. +.|++..|||.+|++++||.|.+.+.+ ...+|++|+.++ .++++|.|||+|++
T Consensus 3 ~~~p~rl~v~~v~~--g~G~v~~G~v~~G~i~~Gd~v~i~P~~-------~~~~V~~I~~~~----~~~~~A~aGd~V~l 69 (204)
T 3e1y_E 3 LGSPIRLPIVDKYK--DMGTVVLGKLESGSICKGQQLVMMPNK-------HNVEVLGILSDD----VETDTVAPGENLKI 69 (204)
T ss_dssp ----CBEEEEEEEE--SSSEEEEEECCBSCEESSCCEEETTTT-------EEEEEEEECSSS----SCBSEECTTSEEEE
T ss_pred CCCCEEEEEEEEEc--CCCEEEEEEEecCEEECCCEEEECCCC-------CEEEEEEEEECC----EEeEEECCCCEEEE
Confidence 47899999999976 689999999999999999999998753 578999998765 58999999999988
Q ss_pred --cCcC--CCccCceeeecCCC
Q 006068 339 --AGMT--KPSIGHTVANTEVT 356 (662)
Q Consensus 339 --~gl~--~~~~GdTl~~~~~~ 356 (662)
+|++ ++..||+||+++++
T Consensus 70 ~L~gi~~~di~rG~vl~~~~~~ 91 (204)
T 3e1y_E 70 RLKGIEEEEILPGFILCDPNNL 91 (204)
T ss_dssp EEEESSSSCCCTTCEEBCSSSC
T ss_pred EEcCCCHHHCccceEEECCCCC
Confidence 7775 68999999998754
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.81 E-value=1.7e-08 Score=109.56 Aligned_cols=145 Identities=16% Similarity=0.157 Sum_probs=83.5
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC--eeEEEEeCCCCccch---
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE--NELNMVDTPGHADFG--- 133 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~--~~iniIDTPGh~dF~--- 133 (662)
.+++++|+|+.|+|||||++.|++...... .+ .....+.+.......+...+ ..++++|+||..+..
T Consensus 41 ei~~vaLvG~nGaGKSTLln~L~G~~l~g~---~~-----~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~ 112 (427)
T 2qag_B 41 FCFNILCVGETGLGKSTLMDTLFNTKFEGE---PA-----THTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKE 112 (427)
T ss_dssp CEEEEEEECSTTSSSHHHHHHHHTSCC---------------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhCccccCC---cC-----CCCCccceEeeEEEEeecCccccccchhhhhhhhhccccc
Confidence 456799999999999999999987621100 00 00011222221111122222 268999999976531
Q ss_pred -----------HHHHHHHhh---------------cc-eEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCC
Q 006068 134 -----------GEVERVVGM---------------VE-GAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAV 186 (662)
Q Consensus 134 -----------~ev~~~l~~---------------aD-~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~ 186 (662)
..+..++.. +| .++||+|+.++....+.++++.+. .+.|+|+|+||+|..
T Consensus 113 ~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~L-- 189 (427)
T 2qag_B 113 DSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAI-- 189 (427)
T ss_dssp HHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGS--
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhcc--
Confidence 112222211 12 366788999999888888887776 789999999999984
Q ss_pred CHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEccc
Q 006068 187 SEERCDEVESLVFDLFANLGATDEQLDFPVLYASA 221 (662)
Q Consensus 187 ~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA 221 (662)
.+.......+.+.+-+... .++++++|.
T Consensus 190 t~~E~~~l~~~I~~~L~~~-------gi~I~~is~ 217 (427)
T 2qag_B 190 SKSELTKFKIKITSELVSN-------GVQIYQFPT 217 (427)
T ss_dssp CHHHHHHHHHHHHHHHBTT-------BCCCCCCC-
T ss_pred chHHHHHHHHHHHHHHHHc-------CCcEEecCC
Confidence 4444455555555433332 256788875
No 207
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.79 E-value=2.1e-09 Score=115.06 Aligned_cols=133 Identities=15% Similarity=0.171 Sum_probs=85.3
Q ss_pred eEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCC-----------chhhHHHHHHHHHH----c
Q 006068 106 TIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEG-----------PLAQTKFVLAKALK----Y 170 (662)
Q Consensus 106 Ti~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G-----------~~~qt~~~l~~~~~----~ 170 (662)
|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|..+- -+.....+|..... .
T Consensus 188 T~Gi~~~~~~~~~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~ 267 (362)
T 1zcb_A 188 TKGIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFS 267 (362)
T ss_dssp CSSEEEEEEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGT
T ss_pred ccceEEEEeeeCCeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhC
Confidence 44445567788899999999999999998888899999999999998762 23444556665544 3
Q ss_pred CCCcEEEeccCCCCCC----------------CHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCC
Q 006068 171 GLRPILLLNKVDRPAV----------------SEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDP 234 (662)
Q Consensus 171 ~lp~IvviNKiD~~~~----------------~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~ 234 (662)
++|+|+|+||+|+... .+....+..+-+.+.|..+........++++++||+++.
T Consensus 268 ~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~--------- 338 (362)
T 1zcb_A 268 NVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTE--------- 338 (362)
T ss_dssp TSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHH---------
T ss_pred CCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCch---------
Confidence 6899999999998410 001123333333334444322111234678999999998
Q ss_pred CCCccchHHHHHHHHhhC
Q 006068 235 PADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 235 ~~~~~gv~~Lld~I~~~l 252 (662)
|++.+|+++.+.+
T Consensus 339 -----nV~~vF~~v~~~i 351 (362)
T 1zcb_A 339 -----NIRLVFRDVKDTI 351 (362)
T ss_dssp -----HHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHH
Confidence 9999999887654
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.71 E-value=1.2e-07 Score=97.32 Aligned_cols=141 Identities=18% Similarity=0.200 Sum_probs=83.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccc--ccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch-----
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMD--SISLERERGITIASKVTGISWRENELNMVDTPGHADFG----- 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D--~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~----- 133 (662)
.|++|+|+.|+|||||++.|++........-.+.. .......+++........ -...++++|+||..+..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~---~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGG---VKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC-------CCEEEEECCCC--CCSBCTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCC---CcCCceEEechhhhhhcccHHH
Confidence 58999999999999999999987432211101100 000011122222111111 12368999999965411
Q ss_pred -HHHH--------HHH--------------hhcceEEEEee-CCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHH
Q 006068 134 -GEVE--------RVV--------------GMVEGAILVVD-AGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEE 189 (662)
Q Consensus 134 -~ev~--------~~l--------------~~aD~aIlVVD-a~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~ 189 (662)
..+. ..+ ..++.+++++| ..+|..+.+..+++.+.+. +++|+|+||+|.. ...
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~l--t~~ 156 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTM--TLE 156 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGS--CHH
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccC--CHH
Confidence 0111 111 12467888999 5589999999998888776 9999999999984 445
Q ss_pred HHHHHHHHHHHHHHhcCC
Q 006068 190 RCDEVESLVFDLFANLGA 207 (662)
Q Consensus 190 ~~~ei~~~v~~l~~~~g~ 207 (662)
......+.+.+.+...+.
T Consensus 157 e~~~~k~~i~~~l~~~~i 174 (270)
T 3sop_A 157 EKSEFKQRVRKELEVNGI 174 (270)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCc
Confidence 555566666666665543
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.68 E-value=1.5e-07 Score=102.16 Aligned_cols=165 Identities=14% Similarity=0.098 Sum_probs=98.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-eeEEEEeCCCCccchHHHHHHH
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-NELNMVDTPGHADFGGEVERVV 140 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-~~iniIDTPGh~dF~~ev~~~l 140 (662)
.++|+|+.|+|||||++.|++........- ..+..+..+ +++ .+.... ..++++|+||...-...+..++
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI-~~~g~~~t~-~~~-------v~q~~~~~~ltv~D~~g~~~~~~~~~~~L 141 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAA-KTGVVEVTM-ERH-------PYKHPNIPNVVFWDLPGIGSTNFPPDTYL 141 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSC-CCCC----C-CCE-------EEECSSCTTEEEEECCCGGGSSCCHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceE-EECCeecce-eEE-------eccccccCCeeehHhhcccchHHHHHHHH
Confidence 899999999999999999997422111100 011111111 111 111112 3689999999642111223333
Q ss_pred h-----hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC-------CCCHHHHHHHHHHHHHHH----Hh
Q 006068 141 G-----MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP-------AVSEERCDEVESLVFDLF----AN 204 (662)
Q Consensus 141 ~-----~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~-------~~~~~~~~ei~~~v~~l~----~~ 204 (662)
. ..|..++ +|... .+.|...+.+.+...+.|+++|+||.|.. +.|+....++.+.+.++. .+
T Consensus 142 ~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~ 219 (413)
T 1tq4_A 142 EKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE 219 (413)
T ss_dssp HHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 2 2344444 77755 57777788888888899999999999973 223323344444444443 22
Q ss_pred cCCCCcCCCccEEEccc--ccCccCCccCCCCCCCccchHHHHHHHHhhCCCC
Q 006068 205 LGATDEQLDFPVLYASA--KEGWASSTFTKDPPADVRNMSQLLDAIIRHVPPP 255 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA--~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~p 255 (662)
.|.+. -.++.+|+ ..+. |++.|.+.|.+.+|.-
T Consensus 220 ~g~~~----~~iiliSsh~l~~~--------------~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 220 NGIAE----PPIFLLSNKNVCHY--------------DFPVLMDKLISDLPIY 254 (413)
T ss_dssp TTCSS----CCEEECCTTCTTST--------------THHHHHHHHHHHSCGG
T ss_pred cCCCC----CcEEEEecCcCCcc--------------CHHHHHHHHHHhCccc
Confidence 23211 24788999 5555 7999999999999753
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=98.62 E-value=3.9e-08 Score=105.85 Aligned_cols=83 Identities=19% Similarity=0.181 Sum_probs=51.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-----------------eeEE
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NELN 122 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-----------------~~in 122 (662)
..+|+|+|.+|+|||||+++|+.... ......+.|+......+.+.+ ..++
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~------------~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~ 89 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA------------SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLN 89 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC-------------------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc------------cccCCCccccCceeEEEEECCccceeeccccCcccccccccE
Confidence 35799999999999999999986521 222334555555555554432 3599
Q ss_pred EEeCCCCccchH-------HHHHHHhhcceEEEEeeCCC
Q 006068 123 MVDTPGHADFGG-------EVERVVGMVEGAILVVDAGE 154 (662)
Q Consensus 123 iIDTPGh~dF~~-------ev~~~l~~aD~aIlVVDa~~ 154 (662)
||||||+..+.. .+..+++.+|++++|+|+.+
T Consensus 90 lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 90 VVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFE 128 (396)
T ss_dssp EEECCC-----------CCHHHHHHHTSSSEEEEEEC--
T ss_pred EEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCC
Confidence 999999887543 56788899999999999964
No 211
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.57 E-value=2.1e-08 Score=105.45 Aligned_cols=135 Identities=16% Similarity=0.185 Sum_probs=95.6
Q ss_pred cceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCC-------CC----chhhHHHHHHHHHH--
Q 006068 103 RGITIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAG-------EG----PLAQTKFVLAKALK-- 169 (662)
Q Consensus 103 rgiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~-------~G----~~~qt~~~l~~~~~-- 169 (662)
+..|+......+.+++.++.||||+|+..|...+..+++.++++|+|+|.. +. -+.....+|.....
T Consensus 151 r~~TiGi~~~~~~~~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~ 230 (327)
T 3ohm_A 151 RVPTTGIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYP 230 (327)
T ss_dssp CCCCCSEEEEEEEETTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSG
T ss_pred cCceeeEEEEEEEeeceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhh
Confidence 445566677788889999999999999999999999999999999999754 21 12344556665543
Q ss_pred --cCCCcEEEeccCCCCCCC----------------HHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccC
Q 006068 170 --YGLRPILLLNKVDRPAVS----------------EERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFT 231 (662)
Q Consensus 170 --~~lp~IvviNKiD~~~~~----------------~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~ 231 (662)
.++|+|+|+||+|+.... ....++..+-+.+.|..+... ....+.+.++||+++.
T Consensus 231 ~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~-~~~~i~~~~TsA~d~~------ 303 (327)
T 3ohm_A 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPD-SDKIIYSHFTCATDTE------ 303 (327)
T ss_dssp GGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTT-TTSCEEEEECCTTCHH------
T ss_pred ccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhccc-ccCCcEEEEEEeecCH------
Confidence 368999999999974210 112234444455555554322 2234678899999998
Q ss_pred CCCCCCccchHHHHHHHHhhC
Q 006068 232 KDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 232 ~~~~~~~~gv~~Lld~I~~~l 252 (662)
|++.+|+.+.+.+
T Consensus 304 --------nV~~vF~~v~~~I 316 (327)
T 3ohm_A 304 --------NIRFVFAAVKDTI 316 (327)
T ss_dssp --------HHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHH
Confidence 9999998887654
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.57 E-value=1.2e-08 Score=111.58 Aligned_cols=123 Identities=17% Similarity=0.218 Sum_probs=68.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcC---C-------CCCcccccccccc-ccccceeEeeeE------------EEEE
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG---A-------DIPHERAMDSISL-ERERGITIASKV------------TGIS 115 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g---~-------~~~~~~v~D~~~~-E~ergiTi~~~~------------~~~~ 115 (662)
..++|+|+|++|+|||||+..|..... . ........+.... ....|+.+.... .--.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~ 177 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEK 177 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHH
Confidence 357899999999999999999987531 0 0000000000000 001112111100 0001
Q ss_pred ecCeeEEEEeCCCCccchHHHHHHH------hhcceEEEEeeCCCCchhhHHHHHHHHHHcCC-C-cEEEeccCCCC
Q 006068 116 WRENELNMVDTPGHADFGGEVERVV------GMVEGAILVVDAGEGPLAQTKFVLAKALKYGL-R-PILLLNKVDRP 184 (662)
Q Consensus 116 ~~~~~iniIDTPGh~dF~~ev~~~l------~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~l-p-~IvviNKiD~~ 184 (662)
+.++.+.||||||...........+ ..+|.+++|+||..|. ......+. ...++ | ..+|+||+|..
T Consensus 178 ~~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~-~~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 178 FKKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKA-FKEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp TSSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHH-HHTTSCSCEEEEEECSSSC
T ss_pred hhCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHH-HhhcccCCeEEEEeCCCCc
Confidence 2578899999999876433322222 1478999999998764 22222222 23346 7 67899999984
No 213
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.55 E-value=8.4e-08 Score=100.05 Aligned_cols=103 Identities=22% Similarity=0.192 Sum_probs=76.2
Q ss_pred eEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCc-h-hhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHH
Q 006068 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGP-L-AQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESL 197 (662)
Q Consensus 120 ~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~-~-~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~ 197 (662)
+++|||| |..|......+++.+|++|+|+|+++.. . .....++..+...++|+++|+||+|+.+ .... ++
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~--~~~v----~~ 135 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYD--EDDL----RK 135 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC--HHHH----HH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCC--chhH----HH
Confidence 7999999 8888887788999999999999998754 2 3334566666778999999999999953 2211 22
Q ss_pred HHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHH
Q 006068 198 VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAII 249 (662)
Q Consensus 198 v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~ 249 (662)
+.++...++. . ++++++||++|. |++++++.+.
T Consensus 136 ~~~~~~~~~~----~-~~~~~~SAktg~--------------gv~~lf~~l~ 168 (301)
T 1u0l_A 136 VRELEEIYSG----L-YPIVKTSAKTGM--------------GIEELKEYLK 168 (301)
T ss_dssp HHHHHHHHTT----T-SCEEECCTTTCT--------------THHHHHHHHS
T ss_pred HHHHHHHHhh----h-CcEEEEECCCCc--------------CHHHHHHHhc
Confidence 2233322221 1 569999999999 9999998773
No 214
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.55 E-value=3.9e-08 Score=106.18 Aligned_cols=78 Identities=22% Similarity=0.193 Sum_probs=62.3
Q ss_pred eEeeeEEEEEecCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCC----------C-chhhHHHHHHHHHHc----
Q 006068 106 TIASKVTGISWRENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGE----------G-PLAQTKFVLAKALKY---- 170 (662)
Q Consensus 106 Ti~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~----------G-~~~qt~~~l~~~~~~---- 170 (662)
|+......+.+++..+.||||+|+..|...+..+++.++++|+|+|.++ . -+.....++..+...
T Consensus 204 TiGi~~~~~~~~~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~ 283 (402)
T 1azs_C 204 TSGIFETKFQVDKVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLR 283 (402)
T ss_dssp CCSEEEEEEEETTEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCS
T ss_pred eeeeEEEEeecCCccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCC
Confidence 4444556777889999999999999999999999999999999999876 2 233445566665542
Q ss_pred CCCcEEEeccCCC
Q 006068 171 GLRPILLLNKVDR 183 (662)
Q Consensus 171 ~lp~IvviNKiD~ 183 (662)
++|+|+|+||+|+
T Consensus 284 ~~piiLvgNK~DL 296 (402)
T 1azs_C 284 TISVILFLNKQDL 296 (402)
T ss_dssp SCCEEEEEECHHH
T ss_pred CCeEEEEEEChhh
Confidence 5789999999997
No 215
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.51 E-value=1e-08 Score=110.17 Aligned_cols=116 Identities=14% Similarity=0.154 Sum_probs=73.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch-------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------- 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------- 133 (662)
++|+++|.+|+|||||+|+|+....... +.......+|+|.......+ +..++++||||..+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~------~~~~~~~~~gtT~~~~~~~~---~~~~~liDtPG~~~~~~~~~~l~ 233 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKG------NVITTSYFPGTTLDMIEIPL---ESGATLYDTPGIINHHQMAHFVD 233 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTT------CCCEEEECTTSSCEEEEEEC---STTCEEEECCSCCCCSSGGGGSC
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCc------cceeecCCCCeEEeeEEEEe---CCCeEEEeCCCcCcHHHHHHHHh
Confidence 5899999999999999999998721100 01122344566665544332 2348999999975432
Q ss_pred HHHHHHH---hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC
Q 006068 134 GEVERVV---GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (662)
Q Consensus 134 ~ev~~~l---~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (662)
.+....+ ...|.+++++|+...........+..+...+.|+++++||+|...
T Consensus 234 ~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~ 288 (369)
T 3ec1_A 234 ARDLKIITPKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVH 288 (369)
T ss_dssp TTTHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHHHHhcccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccc
Confidence 2223334 668999999998533221111113333445789999999999854
No 216
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.47 E-value=1.8e-08 Score=108.15 Aligned_cols=117 Identities=12% Similarity=0.142 Sum_probs=70.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccch-------
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFG------- 133 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~------- 133 (662)
++|+++|.+|+|||||+|+|+....... .+.......+|.|.......+ . ..+.++||||..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~-----~~~~~~~~~~gtT~~~~~~~~--~-~~~~liDtPG~~~~~~~~~~l~ 232 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDET-----ENVITTSHFPGTTLDLIDIPL--D-EESSLYDTPGIINHHQMAHYVG 232 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSC-----SSCCEEECCC----CEEEEES--S-SSCEEEECCCBCCTTSGGGGSC
T ss_pred ceEEEecCCCCChhHHHHHHHhhhcccc-----ccceecCCCCCeecceEEEEe--c-CCeEEEeCCCcCcHHHHHHHhh
Confidence 5899999999999999999998742110 011123344577765544332 2 248999999975432
Q ss_pred HHHHHH---HhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC
Q 006068 134 GEVERV---VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (662)
Q Consensus 134 ~ev~~~---l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (662)
.+.... ....+.+++++|+...........+..+...+.|+++++||+|...
T Consensus 233 ~~~l~~~~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~ 287 (368)
T 3h2y_A 233 KQSLKLITPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIH 287 (368)
T ss_dssp HHHHHHHSCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEE
T ss_pred HHHHHHhccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccc
Confidence 222222 2557889999998533222222123333345789999999999854
No 217
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.46 E-value=8.9e-08 Score=102.00 Aligned_cols=122 Identities=15% Similarity=0.146 Sum_probs=78.2
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCC----------C-CchhhHHHHHHHHHH----cCCCcEEEeccC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAG----------E-GPLAQTKFVLAKALK----YGLRPILLLNKV 181 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~----------~-G~~~qt~~~l~~~~~----~~lp~IvviNKi 181 (662)
+..++.||||+|+..|...+..+++.++++|+|+|.+ + .-+.....+|..... .++|+|+|+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4578999999999999999999999999999999975 1 123344456655543 368999999999
Q ss_pred CCCCC-----C----------------HHHHHHHHHHHHHHHHhc---CCCC--cCCCccEEEcccccCccCCccCCCCC
Q 006068 182 DRPAV-----S----------------EERCDEVESLVFDLFANL---GATD--EQLDFPVLYASAKEGWASSTFTKDPP 235 (662)
Q Consensus 182 D~~~~-----~----------------~~~~~ei~~~v~~l~~~~---g~~~--~~~~~Pvi~~SA~~g~~~~~~~~~~~ 235 (662)
|+... . +...++..+-+.+.|..+ .-.. ....++++++||+++.
T Consensus 261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~---------- 330 (354)
T 2xtz_A 261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK---------- 330 (354)
T ss_dssp HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH----------
T ss_pred chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch----------
Confidence 97320 0 001122222222222211 1000 0113457899999998
Q ss_pred CCccchHHHHHHHHhhC
Q 006068 236 ADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 236 ~~~~gv~~Lld~I~~~l 252 (662)
|++.+|+.+.+.+
T Consensus 331 ----nV~~vF~~v~~~I 343 (354)
T 2xtz_A 331 ----LVKKTFKLVDETL 343 (354)
T ss_dssp ----HHHHHHHHHHHHH
T ss_pred ----hHHHHHHHHHHHH
Confidence 9999999887654
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.45 E-value=5.4e-07 Score=98.24 Aligned_cols=123 Identities=17% Similarity=0.134 Sum_probs=69.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccc--cc---------ccccccceeEeeeEE-------------EE
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMD--SI---------SLERERGITIASKVT-------------GI 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D--~~---------~~E~ergiTi~~~~~-------------~~ 114 (662)
+...|+++|.+|+||||++..|............+.+ .. ......|+.+..... .+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999864321111111111 10 011122333322110 01
Q ss_pred EecCeeEEEEeCCCCccch----HHHHHH--HhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCC
Q 006068 115 SWRENELNMVDTPGHADFG----GEVERV--VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~dF~----~ev~~~--l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (662)
...++.+.||||||..... .+.... ...+|.++||+||..|.. .....+...+ .+++ .||+||+|..
T Consensus 179 ~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~--a~~~a~~f~~-~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQ--AYNQALAFKE-ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGG--HHHHHHHHHH-SCTTEEEEEECCSSC
T ss_pred HhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchh--HHHHHHHHHh-hCCCeEEEEECCCCc
Confidence 1135899999999965432 222222 234689999999987632 2223333332 3444 5899999985
No 219
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.42 E-value=3e-07 Score=100.26 Aligned_cols=124 Identities=17% Similarity=0.148 Sum_probs=70.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccccc--c---------cccccceeEeeeE-------------EEE
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI--S---------LERERGITIASKV-------------TGI 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~--~---------~E~ergiTi~~~~-------------~~~ 114 (662)
..+.|+++|+.|+||||++..|............+.+.+ . .....|+.+.... ..+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 357899999999999999999875431110000000000 0 0011122222110 011
Q ss_pred EecCeeEEEEeCCCCcc------chHHHHHHHhh--cceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 115 SWRENELNMVDTPGHAD------FGGEVERVVGM--VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~d------F~~ev~~~l~~--aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
.+.++.+.||||||... +..++....+. .|.++||+|+..|... ....+...+.--+..|++||+|..
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a--~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKA--YDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGG--HHHHHHHHHHCSSEEEEEECGGGC
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHH--HHHHHHHhcccCCcEEEEeccccc
Confidence 12478999999999644 44555544433 4899999999876322 223333333224467899999975
No 220
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.36 E-value=7.7e-07 Score=95.87 Aligned_cols=84 Identities=17% Similarity=0.157 Sum_probs=62.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecC-----------------eeEE
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRE-----------------NELN 122 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~-----------------~~in 122 (662)
-.+|+|+|++|+|||||+++|++... .......++|+......+.+.+ ..+.
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~-----------a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~ 88 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVL-----------GNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLT 88 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTT-----------TSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-----------ccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceE
Confidence 46899999999999999999998521 0222334555555555555543 4689
Q ss_pred EEeCCCCcc-------chHHHHHHHhhcceEEEEeeCCC
Q 006068 123 MVDTPGHAD-------FGGEVERVVGMVEGAILVVDAGE 154 (662)
Q Consensus 123 iIDTPGh~d-------F~~ev~~~l~~aD~aIlVVDa~~ 154 (662)
+|||||... +.......++.+|++++|+|+.+
T Consensus 89 lvD~pGl~~~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 89 VFDIAGLTKGASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp EECTGGGCCCCCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred EEeccccccCCcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999543 45577788899999999999875
No 221
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.31 E-value=7.9e-07 Score=97.23 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=72.4
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCC-CCccccccccc-----------cccccceeEeeeE-------------E
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGAD-IPHERAMDSIS-----------LERERGITIASKV-------------T 112 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~-~~~~~v~D~~~-----------~E~ergiTi~~~~-------------~ 112 (662)
...+.|+++|+.|+||||++..|....... .....+.|.+. .....|+.+.... .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 346899999999999999999998553211 11111111111 1122344333211 0
Q ss_pred EEEecCeeEEEEeCCCCccchHHHHHH------HhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCC
Q 006068 113 GISWRENELNMVDTPGHADFGGEVERV------VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (662)
Q Consensus 113 ~~~~~~~~iniIDTPGh~dF~~ev~~~------l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (662)
.+.+.++.+.||||||...+....... +..+|.+++|+|+..|. ......+.. ..++++ -+|+||+|..
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f-~~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAF-NEALPLTGVVLTKVDGD 253 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHH-HHHSCCCCEEEECTTSS
T ss_pred HHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHH-hccCCCeEEEEecCCCC
Confidence 112357899999999987764444333 33578899999998763 222222222 224563 4799999974
No 222
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.27 E-value=6.5e-06 Score=80.34 Aligned_cols=112 Identities=11% Similarity=-0.018 Sum_probs=65.5
Q ss_pred eEEEEeCC------CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHH----HHHH----cCCCcEEEeccC-CCC
Q 006068 120 ELNMVDTP------GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLA----KALK----YGLRPILLLNKV-DRP 184 (662)
Q Consensus 120 ~iniIDTP------Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~----~~~~----~~lp~IvviNKi-D~~ 184 (662)
++..-.+| |+..+...+..++..+|++|+|||+.+......+.-+. .+.+ .++|++|+.||. |.+
T Consensus 97 k~~~~~~~~~~~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp 176 (227)
T 3l82_B 97 KMFSRHNEGDDQQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDV 176 (227)
T ss_dssp --------------------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTS
T ss_pred hcccccCCCccccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCcc
Confidence 45555666 67777788899999999999999987653222433331 1111 478999999995 776
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 185 AVSEERCDEVESLVFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 185 ~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
++-.. .++. +.+ ++..-...+-+..|||++|. |+.+-+++|.+.+..
T Consensus 177 ~Ams~--~EI~----e~L---~L~~l~R~W~Iq~csA~TGe--------------GL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 177 KRMPC--FYLA----HEL---HLNLLNHPWLVQDTEAETLT--------------GFLNGIEWILEEVES 223 (227)
T ss_dssp CBCCH--HHHH----HHT---TGGGGCSCEEEEEEETTTCT--------------THHHHHHHHTTTTTT
T ss_pred CCCCH--HHHH----HHc---CCcCCCCCEEEEEeECCCCc--------------CHHHHHHHHHHHHHh
Confidence 54321 2222 221 11111124679999999999 999999999987743
No 223
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.19 E-value=2.3e-06 Score=88.23 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=69.9
Q ss_pred EEeCCCCc-cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHH
Q 006068 123 MVDTPGHA-DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDL 201 (662)
Q Consensus 123 iIDTPGh~-dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l 201 (662)
|-+.|||. ....++...+..+|.++.|+||.++.......+-+.+ .++|.++|+||+|+.. ... .+...++
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~--~~~----~~~~~~~ 74 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKAD--AAV----TQQWKEH 74 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSC--HHH----HHHHHHH
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCC--HHH----HHHHHHH
Confidence 44679997 4667888999999999999999987665433332222 5789999999999954 322 2333444
Q ss_pred HHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCC
Q 006068 202 FANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVP 253 (662)
Q Consensus 202 ~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP 253 (662)
+...| +|++++||++|. |+++|++.+.+.++
T Consensus 75 ~~~~g-------~~~i~iSA~~~~--------------gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 75 FENQG-------IRSLSINSVNGQ--------------GLNQIVPASKEILQ 105 (282)
T ss_dssp HHTTT-------CCEEECCTTTCT--------------TGGGHHHHHHHHHH
T ss_pred HHhcC-------CcEEEEECCCcc--------------cHHHHHHHHHHHHH
Confidence 54333 468999999998 89999888876654
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.19 E-value=1.1e-06 Score=91.22 Aligned_cols=122 Identities=16% Similarity=0.133 Sum_probs=71.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccc-----------cccccceeEeeeE-------------EEEE
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSIS-----------LERERGITIASKV-------------TGIS 115 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~-----------~E~ergiTi~~~~-------------~~~~ 115 (662)
...|+++|+.|+||||++..|............+.|.+. .....|+.+.... ..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~~~~~l~~~~ 177 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGIAKRGVEKFL 177 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 568999999999999999998855321111111111110 0111233332210 0012
Q ss_pred ecCeeEEEEeCCCCcc--chHHHH------HHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCC
Q 006068 116 WRENELNMVDTPGHAD--FGGEVE------RVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRP 184 (662)
Q Consensus 116 ~~~~~iniIDTPGh~d--F~~ev~------~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~ 184 (662)
++++.+.||||||... ...... .....+|.+++|+|+..+ .+.....+...+ .++ ..+|+||+|..
T Consensus 178 ~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 178 SEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDGT 252 (297)
T ss_dssp HTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGGC
T ss_pred hCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCCC
Confidence 2578999999999877 422221 234578999999999764 233333333333 577 46899999974
No 225
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.09 E-value=3.5e-06 Score=87.77 Aligned_cols=96 Identities=21% Similarity=0.246 Sum_probs=66.7
Q ss_pred CccchHHHHHHHhhcceEEEEeeCCCCc-hhh-HHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcC
Q 006068 129 HADFGGEVERVVGMVEGAILVVDAGEGP-LAQ-TKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLG 206 (662)
Q Consensus 129 h~dF~~ev~~~l~~aD~aIlVVDa~~G~-~~q-t~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g 206 (662)
+..|......+++.+|.+++|+|+.+.. ..+ ...++..+...++|+++|+||+|+.+ .... +..++..+.+..+|
T Consensus 66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~--~~~v-~~~~~~~~~~~~~g 142 (302)
T 2yv5_A 66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLN--EEEK-KELERWISIYRDAG 142 (302)
T ss_dssp CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCC--HHHH-HHHHHHHHHHHHTT
T ss_pred CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCC--cccc-HHHHHHHHHHHHCC
Confidence 4444444445788999999999998753 333 34566677778999999999999953 2211 11233444454444
Q ss_pred CCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHH
Q 006068 207 ATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (662)
Q Consensus 207 ~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I 248 (662)
++++++||++|. |+++|++.+
T Consensus 143 -------~~~~~~SA~~g~--------------gi~~L~~~l 163 (302)
T 2yv5_A 143 -------YDVLKVSAKTGE--------------GIDELVDYL 163 (302)
T ss_dssp -------CEEEECCTTTCT--------------THHHHHHHT
T ss_pred -------CeEEEEECCCCC--------------CHHHHHhhc
Confidence 469999999998 899888865
No 226
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.00 E-value=3.2e-06 Score=95.46 Aligned_cols=106 Identities=16% Similarity=0.072 Sum_probs=63.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEE-EecCeeEEEEeCCCCccchH---
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGI-SWRENELNMVDTPGHADFGG--- 134 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~-~~~~~~iniIDTPGh~dF~~--- 134 (662)
+...|+|+|.+|+|||||+|+|++.........+ .....+|+.... ..+ ...+..+.|+||||..+...
T Consensus 37 ~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~t-----t~~~T~gi~~~~--~~~~~~~~~~i~LiDTpGi~~~~~~~~ 109 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGST-----VQSHTKGIWMWC--VPHPKKPGHILVLLDTEGLGDVEKGDN 109 (592)
T ss_dssp BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCS-----SSCCCCSEEEEE--EECSSSTTCEEEEEEECCBCCGGGCCC
T ss_pred CCcEEEEECCCCCCHHHHHHhHcCCCCccccCCC-----CCCceeEEEEee--cccccCCCceEEEecCCCcCcccccch
Confidence 4678999999999999999999875311000000 001112221110 000 12467899999999765322
Q ss_pred ---HHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcC
Q 006068 135 ---EVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG 171 (662)
Q Consensus 135 ---ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~ 171 (662)
....++...-..++|+|+..++..+....+..+.+.+
T Consensus 110 ~~~~~~fala~llss~lv~n~~~~i~~~dl~~l~~v~e~~ 149 (592)
T 1f5n_A 110 QNDSWIFALAVLLSSTFVYNSIGTINQQAMDQLYYVTELT 149 (592)
T ss_dssp TTHHHHHHHHHHHCSEEEEEEESCSSHHHHHTTHHHHTHH
T ss_pred hHHHHHHHHHHHhcCeEEEECCCCccHHHHHHHHHHHHHh
Confidence 1111233333447889998889888887777665543
No 227
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.95 E-value=1.1e-05 Score=86.49 Aligned_cols=111 Identities=21% Similarity=0.110 Sum_probs=71.4
Q ss_pred eEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHH
Q 006068 120 ELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVF 199 (662)
Q Consensus 120 ~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~ 199 (662)
++.-+++| +.+|......+...++.+|+|+|+.+........+.+.+ .+.|+++|+||+|+..... ....+.+.+.
T Consensus 50 ~~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~~~-~~~~~~~~l~ 125 (369)
T 3ec1_A 50 EVQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPRSV-KYPKLLRWMR 125 (369)
T ss_dssp ----------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCTTC-CHHHHHHHHH
T ss_pred cccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCCcc-CHHHHHHHHH
Confidence 45555665 788998888888999999999999875532222222222 2789999999999964321 1123334444
Q ss_pred HHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 200 DLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 200 ~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
+++...|... .+++++||++|+ |+++|++.|.++.
T Consensus 126 ~~~~~~g~~~----~~v~~iSA~~g~--------------gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 126 RMAEELGLCP----VDVCLVSAAKGI--------------GMAKVMEAINRYR 160 (369)
T ss_dssp HHHHTTTCCC----SEEEECBTTTTB--------------THHHHHHHHHHHH
T ss_pred HHHHHcCCCc----ccEEEEECCCCC--------------CHHHHHHHHHhhc
Confidence 4556666531 258999999999 9999999997765
No 228
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.81 E-value=4.6e-05 Score=73.67 Aligned_cols=121 Identities=11% Similarity=0.076 Sum_probs=75.4
Q ss_pred cEEEEE-eCCCCCHHHHHHHHHHhcCCCCCcccccccccc--------ccccceeEeeeEE-EE------EecCeeEEEE
Q 006068 61 RNVAVI-AHVDHGKTTLMDRLLRQCGADIPHERAMDSISL--------ERERGITIASKVT-GI------SWRENELNMV 124 (662)
Q Consensus 61 rnIaIi-Gh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~--------E~ergiTi~~~~~-~~------~~~~~~iniI 124 (662)
+.|+|. +..|+||||++-.|............+.|.++. ....+..+..... .+ --+.+.+.||
T Consensus 2 ~vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~yD~vii 81 (206)
T 4dzz_A 2 KVISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDPQMSLTNWSKAGKAAFDVFTAASEKDVYGIRKDLADYDFAIV 81 (206)
T ss_dssp EEEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHTTSCCSSEEEECCSHHHHHTHHHHTTTSSEEEE
T ss_pred eEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhcCCCCCcEEecCcHHHHHHHHHhcCCCCEEEE
Confidence 457777 568899999988876543211111112222111 0111111111000 00 0135899999
Q ss_pred eCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcC-----CCcEEEeccCCCC
Q 006068 125 DTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG-----LRPILLLNKVDRP 184 (662)
Q Consensus 125 DTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~-----lp~IvviNKiD~~ 184 (662)
|||+.. ......++..+|.+|+++...... ..+...++.+.+.+ +++.+|+|++|..
T Consensus 82 D~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 82 DGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp ECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred ECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 999976 456677899999999999988776 77777777777553 5678999999963
No 229
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.81 E-value=9.6e-06 Score=82.70 Aligned_cols=95 Identities=22% Similarity=0.214 Sum_probs=63.8
Q ss_pred CCCCccch-HHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHh
Q 006068 126 TPGHADFG-GEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFAN 204 (662)
Q Consensus 126 TPGh~dF~-~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~ 204 (662)
-|||.... .++...+..+|.+|.|+||.++.......+- .+ ++|+++|+||+|+.+ ... .+...+.+..
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~--~~~----~~~~~~~~~~ 73 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIAD--EKT----TKKWVEFFKK 73 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSC--HHH----HHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCC--HHH----HHHHHHHHHH
Confidence 38987654 5888999999999999999887654432211 12 899999999999953 322 2333444544
Q ss_pred cCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 205 LGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 205 ~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
.| +|+ ++||++|. |+++|++.+.+.+
T Consensus 74 ~g-------~~v-~iSa~~~~--------------gi~~L~~~l~~~~ 99 (262)
T 3cnl_A 74 QG-------KRV-ITTHKGEP--------------RKVLLKKLSFDRL 99 (262)
T ss_dssp TT-------CCE-EECCTTSC--------------HHHHHHHHCCCTT
T ss_pred cC-------CeE-EEECCCCc--------------CHHHHHHHHHHhh
Confidence 33 467 99999998 9999998875443
No 230
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.79 E-value=1.8e-05 Score=81.50 Aligned_cols=58 Identities=28% Similarity=0.371 Sum_probs=35.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCcc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHAD 131 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~d 131 (662)
..+|+++|.+|+|||||+|+|+.... .......|+|.......+ +..+.++||||..+
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~-----------~~~~~~~g~T~~~~~~~~---~~~~~l~DtpG~~~ 177 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI-----------AKTGDRPGITTSQQWVKV---GKELELLDTPGILW 177 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC-----------C------------CCEEE---TTTEEEEECCCCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce-----------eecCCCCCeeeeeEEEEe---CCCEEEEECcCcCC
Confidence 46899999999999999999996521 122234466655543222 45899999999754
No 231
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.75 E-value=2.6e-05 Score=83.42 Aligned_cols=102 Identities=22% Similarity=0.098 Sum_probs=69.5
Q ss_pred CCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH--cCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhc
Q 006068 128 GHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK--YGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANL 205 (662)
Q Consensus 128 Gh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~--~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~ 205 (662)
...+|......+.+.+|++|+|+|+.+.. ..+...+.+ .+.|+++|+||+|+..... ...++.+.+..++...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~----~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~-~~~~~~~~l~~~~~~~ 129 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN----GSWLPGLHRFVGNNKVLLVGNKADLIPKSV-KHDKVKHWMRYSAKQL 129 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH----HHCCTTHHHHSSSSCEEEEEECGGGSCTTS-CHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc----ccHHHHHHHHhCCCcEEEEEEChhcCCccc-CHHHHHHHHHHHHHHc
Confidence 35678888888889999999999998732 222222222 3789999999999954321 1122333344445555
Q ss_pred CCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhC
Q 006068 206 GATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHV 252 (662)
Q Consensus 206 g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~l 252 (662)
|... .+++++||++|+ |+++|++.|.++.
T Consensus 130 g~~~----~~v~~iSA~~g~--------------gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 130 GLKP----EDVFLISAAKGQ--------------GIAELADAIEYYR 158 (368)
T ss_dssp TCCC----SEEEECCTTTCT--------------THHHHHHHHHHHH
T ss_pred CCCc----ccEEEEeCCCCc--------------CHHHHHhhhhhhc
Confidence 5421 258999999999 9999999997754
No 232
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.75 E-value=5.1e-05 Score=79.81 Aligned_cols=124 Identities=17% Similarity=0.157 Sum_probs=65.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccc--cc---ccc------ccccceeEeeeEEEE-------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM--DS---ISL------ERERGITIASKVTGI------------- 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~--D~---~~~------E~ergiTi~~~~~~~------------- 114 (662)
+...|+|+|+.|+|||||+..|.+........-.+. |. ... .+..|+.+.......
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 356899999999999999999886532111000000 00 000 111233221110000
Q ss_pred EecCeeEEEEeCCCCcc----chHHHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCC
Q 006068 115 SWRENELNMVDTPGHAD----FGGEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRP 184 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~d----F~~ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~ 184 (662)
...++.+.++||+|... +..+..... -..|-.++++|+..+- +....++...+.--..++++||+|..
T Consensus 208 ~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~--~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGN--AIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp HHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTT--HHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred HhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHH--HHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 01356788999999643 233333222 2368899999987762 33333333332222347889999963
No 233
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.67 E-value=0.00012 Score=74.90 Aligned_cols=105 Identities=12% Similarity=0.002 Sum_probs=69.9
Q ss_pred CCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHH----HHH---HH-cCCCcEEEecc-CCCCCCCHHHHHHHHHH
Q 006068 127 PGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVL----AKA---LK-YGLRPILLLNK-VDRPAVSEERCDEVESL 197 (662)
Q Consensus 127 PGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l----~~~---~~-~~lp~IvviNK-iD~~~~~~~~~~ei~~~ 197 (662)
.|+..+...+..++..+|++|+|||+.+..-...+.-+ ..+ .. .+.|++|+.|| -|.+++-.. .++.
T Consensus 195 GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~Ams~--~EI~-- 270 (312)
T 3l2o_B 195 GSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRMPC--FYLA-- 270 (312)
T ss_dssp --CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCBCCH--HHHH--
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCCCCH--HHHH--
Confidence 36788889999999999999999998765321222211 222 22 58999999997 588765331 2222
Q ss_pred HHHHHHhcCCCCcCCCccEEEcccccCccCCccCCCCCCCccchHHHHHHHHhhCCC
Q 006068 198 VFDLFANLGATDEQLDFPVLYASAKEGWASSTFTKDPPADVRNMSQLLDAIIRHVPP 254 (662)
Q Consensus 198 v~~l~~~~g~~~~~~~~Pvi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I~~~lP~ 254 (662)
+.+ +...-...+-|..|||.+|. |+.+-++++.+.+..
T Consensus 271 --e~L---~L~~l~r~W~Iq~csA~tGe--------------GL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 271 --HEL---HLNLLNHPWLVQDTEAETLT--------------GFLNGIEWILEEVES 308 (312)
T ss_dssp --HHT---TGGGGCSCEEEEEEETTTCT--------------THHHHHHHHHHHSCC
T ss_pred --HHc---CCccCCCcEEEEecccCCCc--------------CHHHHHHHHHHHHHh
Confidence 221 11111124669999999999 999999999988743
No 234
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.67 E-value=7.2e-05 Score=78.41 Aligned_cols=122 Identities=18% Similarity=0.244 Sum_probs=66.8
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccc-----------ccc---ccceeEe-eeEE----------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSIS-----------LER---ERGITIA-SKVT---------- 112 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~-----------~E~---ergiTi~-~~~~---------- 112 (662)
.....|+|+|..|+||||++..|..........-.+.|.+. ... ..++.+. ....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~~p~~~~~~ 182 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNADPASVVFD 182 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCCCHHHHHHH
Confidence 34568999999999999999988754321111111111110 000 2334333 1100
Q ss_pred EE---EecCeeEEEEeCCCCccchH----HHHH---HH-----hhcceEEEEeeCCCCchhhHHHHHHHHHHc--CCCc-
Q 006068 113 GI---SWRENELNMVDTPGHADFGG----EVER---VV-----GMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRP- 174 (662)
Q Consensus 113 ~~---~~~~~~iniIDTPGh~dF~~----ev~~---~l-----~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~--~lp~- 174 (662)
.+ ..+++.+.||||||...... +... .+ ..+|.+++|+|+..+ ..+ +..+..+ .+++
T Consensus 183 ~l~~~~~~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~---l~~~~~~~~~~~i~ 257 (320)
T 1zu4_A 183 AIKKAKEQNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNG---VIQAEEFSKVADVS 257 (320)
T ss_dssp HHHHHHHTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHH---HHHHHHHTTTSCCC
T ss_pred HHHHHHhcCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHH---HHHHHHHhhcCCCc
Confidence 00 01478999999999765432 2221 12 136889999999854 222 2333333 2444
Q ss_pred EEEeccCCCC
Q 006068 175 ILLLNKVDRP 184 (662)
Q Consensus 175 IvviNKiD~~ 184 (662)
=+|+||+|..
T Consensus 258 GvVltk~d~~ 267 (320)
T 1zu4_A 258 GIILTKMDST 267 (320)
T ss_dssp EEEEECGGGC
T ss_pred EEEEeCCCCC
Confidence 3889999964
No 235
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.55 E-value=3.1e-05 Score=78.87 Aligned_cols=58 Identities=26% Similarity=0.380 Sum_probs=36.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADF 132 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF 132 (662)
.+++++|.+|+|||||+|+|+..... ......|+|....... -+..++||||||..+.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~-----------~~~~~~g~T~~~~~~~---~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRAS-----------SVGAQPGITKGIQWFS---LENGVKILDTPGILYK 157 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC---------------------CCSCEEE---CTTSCEEESSCEECCC
T ss_pred hheEEeCCCCCCHHHHHHHHhccccc-----------ccCCCCCCccceEEEE---eCCCEEEEECCCcccC
Confidence 58999999999999999999965321 1122235555443221 2457999999997764
No 236
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.53 E-value=0.00025 Score=71.73 Aligned_cols=67 Identities=13% Similarity=-0.004 Sum_probs=51.6
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDR 183 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~ 183 (662)
+.+.+.|||||+...........+..+|.+|+|+.........+...++.+.+.+++.+ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 56889999999876532222233447999999999887777777788888888899987 89999984
No 237
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.53 E-value=9.6e-05 Score=72.38 Aligned_cols=120 Identities=13% Similarity=0.057 Sum_probs=75.8
Q ss_pred EEEEE-eCCCCCHHHHHHHHHHhcCCCCCcccccccccccccc------cee--Eeee-EEEEEecCeeEEEEeCCCC-c
Q 006068 62 NVAVI-AHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERER------GIT--IASK-VTGISWRENELNMVDTPGH-A 130 (662)
Q Consensus 62 nIaIi-Gh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~er------giT--i~~~-~~~~~~~~~~iniIDTPGh-~ 130 (662)
.|+|+ +..|+||||+.-.|........ ...+.|.++...-. ... +... ...--...+.+.|||||+. .
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~~~~~~~~~~l~~~vi~~~~l~~l~~~yD~viiD~p~~~~ 80 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRSATGWGKRGSLPFKVVDERQAAKYAPKYQNIVIDTQARPE 80 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCHHHHHHHHSCCSSEEEEGGGHHHHGGGCSEEEEEEECCCS
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCCHHHHhcCCCCCcceeCHHHHHHhhhcCCEEEEeCCCCcC
Confidence 36665 5689999999988876543222 33333433321100 000 0000 0000024688999999997 5
Q ss_pred cchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc-CCCcEEEeccCCCC
Q 006068 131 DFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY-GLRPILLLNKVDRP 184 (662)
Q Consensus 131 dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~-~lp~IvviNKiD~~ 184 (662)
.. .+..++..+|.+|+++.+.......+...++.+.+. +.+..+|+|++|..
T Consensus 81 ~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 81 DE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp SS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 43 456788999999999998766666677777777774 77888999999974
No 238
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.48 E-value=0.0002 Score=78.88 Aligned_cols=123 Identities=22% Similarity=0.213 Sum_probs=65.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc--ccccc---------cccccceeEeeeEEEE------------
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS---------LERERGITIASKVTGI------------ 114 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~---------~E~ergiTi~~~~~~~------------ 114 (662)
.....|+|+|..|+|||||+..|.+........-.+ .|... ....+++.+.......
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV~e~l~~ 370 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVIFDAIQA 370 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHHHHHHHH
Confidence 345689999999999999999988643211100011 01110 0012233332211100
Q ss_pred -EecCeeEEEEeCCCCccc----hHHHH---HHHhh-----cceEEEEeeCCCCchhhHHHHHHHHH-HcCCCcEEEecc
Q 006068 115 -SWRENELNMVDTPGHADF----GGEVE---RVVGM-----VEGAILVVDAGEGPLAQTKFVLAKAL-KYGLRPILLLNK 180 (662)
Q Consensus 115 -~~~~~~iniIDTPGh~dF----~~ev~---~~l~~-----aD~aIlVVDa~~G~~~qt~~~l~~~~-~~~lp~IvviNK 180 (662)
...++.+.||||+|.... ..+.. +..+. .+-++||+|+..|-. ....++... ..++ ..+++||
T Consensus 371 a~~~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~--al~~ak~f~~~~~i-tgvIlTK 447 (503)
T 2yhs_A 371 AKARNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQN--AVSQAKLFHEAVGL-TGITLTK 447 (503)
T ss_dssp HHHTTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHH--HHHHHHHHHHHTCC-SEEEEEC
T ss_pred HHhcCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHH--HHHHHHHHHhhcCC-CEEEEEc
Confidence 013678999999997532 22222 22221 346899999987622 122222222 2333 3678999
Q ss_pred CCC
Q 006068 181 VDR 183 (662)
Q Consensus 181 iD~ 183 (662)
+|.
T Consensus 448 LD~ 450 (503)
T 2yhs_A 448 LDG 450 (503)
T ss_dssp GGG
T ss_pred CCC
Confidence 996
No 239
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.47 E-value=0.00018 Score=78.21 Aligned_cols=123 Identities=21% Similarity=0.192 Sum_probs=67.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccccc-----------ccccccceeEeeeEE----------EE---
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI-----------SLERERGITIASKVT----------GI--- 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~-----------~~E~ergiTi~~~~~----------~~--- 114 (662)
....|+++|+.|+||||++..|............+.|.+ ......|+.+..... .+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 456899999999999999999886532111110110100 001112333322110 00
Q ss_pred EecCeeEEEEeCCCCccch----HHHHHH--HhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccCCCC
Q 006068 115 SWRENELNMVDTPGHADFG----GEVERV--VGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKVDRP 184 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~dF~----~ev~~~--l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKiD~~ 184 (662)
...++.+.||||||..... .+.... ...+|.++||+|+..+ .......+.... .++ .-||+||+|..
T Consensus 177 ~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~~-~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (425)
T ss_dssp HHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHH-HTCCCEEEEESGGGC
T ss_pred HHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHHh-cCCceEEEEeCcCCc
Confidence 1246889999999965432 222222 2247899999999765 222222222221 355 45789999974
No 240
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.44 E-value=0.00025 Score=80.78 Aligned_cols=68 Identities=19% Similarity=0.228 Sum_probs=38.9
Q ss_pred CeeEEEEeCCCCcc--c-------hHHHHHH----Hhhc-ceEEEEeeCCCCchh-hHHHHHHHHHHcCCCcEEEeccCC
Q 006068 118 ENELNMVDTPGHAD--F-------GGEVERV----VGMV-EGAILVVDAGEGPLA-QTKFVLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 118 ~~~iniIDTPGh~d--F-------~~ev~~~----l~~a-D~aIlVVDa~~G~~~-qt~~~l~~~~~~~lp~IvviNKiD 182 (662)
.-.+.|+|.||... + ...+... +..- ..+++++++...... ....+++.+...+.+.|+|+||.|
T Consensus 146 ~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D 225 (608)
T 3szr_A 146 VPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD 225 (608)
T ss_dssp SCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred CCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence 35799999998543 1 1222222 2222 445666666544332 233444555555889999999999
Q ss_pred CCC
Q 006068 183 RPA 185 (662)
Q Consensus 183 ~~~ 185 (662)
+..
T Consensus 226 lv~ 228 (608)
T 3szr_A 226 LVD 228 (608)
T ss_dssp GSS
T ss_pred hcC
Confidence 864
No 241
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.41 E-value=0.00015 Score=75.45 Aligned_cols=123 Identities=20% Similarity=0.196 Sum_probs=63.9
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccc-----------cccccceeEeeeE-------------EEE
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSIS-----------LERERGITIASKV-------------TGI 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~-----------~E~ergiTi~~~~-------------~~~ 114 (662)
....|+|+|+.|+||||++..|..........-.+.|.+. .-...|+.+.... ...
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 4568999999999999999988764321110000101000 0011233321110 000
Q ss_pred EecCeeEEEEeCCCCccchHHH----H---HHH-----hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC-cEEEeccC
Q 006068 115 SWRENELNMVDTPGHADFGGEV----E---RVV-----GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR-PILLLNKV 181 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~dF~~ev----~---~~l-----~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp-~IvviNKi 181 (662)
...++.+.|+||||........ . +.+ ..+|.+++|+|+..+ .......+...+ .++ .-+++||+
T Consensus 183 ~~~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~-~~~i~gvVlTk~ 259 (306)
T 1vma_A 183 LARNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKE-AVNVTGIILTKL 259 (306)
T ss_dssp HHTTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHH-HSCCCEEEEECG
T ss_pred HhcCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHh-cCCCCEEEEeCC
Confidence 1246789999999964433222 1 222 136889999999743 122222222222 233 34778999
Q ss_pred CCC
Q 006068 182 DRP 184 (662)
Q Consensus 182 D~~ 184 (662)
|..
T Consensus 260 D~~ 262 (306)
T 1vma_A 260 DGT 262 (306)
T ss_dssp GGC
T ss_pred CCc
Confidence 974
No 242
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.37 E-value=0.00036 Score=72.56 Aligned_cols=123 Identities=24% Similarity=0.201 Sum_probs=65.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccc--cccc---cc------cccceeEeeeEEE----------E---
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAM--DSIS---LE------RERGITIASKVTG----------I--- 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~--D~~~---~E------~ergiTi~~~~~~----------~--- 114 (662)
+...|+|+|+.|+|||||+..|..........-.+. |... .+ +.+++.+...... +
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 346899999999999999999986532111100000 0000 00 1122322111000 0
Q ss_pred EecCeeEEEEeCCCCccch----HHHHH---HH-----hhcceEEEEeeCCCCchhhHHHHHHHH-HHcCCCcEEEeccC
Q 006068 115 SWRENELNMVDTPGHADFG----GEVER---VV-----GMVEGAILVVDAGEGPLAQTKFVLAKA-LKYGLRPILLLNKV 181 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~dF~----~ev~~---~l-----~~aD~aIlVVDa~~G~~~qt~~~l~~~-~~~~lp~IvviNKi 181 (662)
...++.+.++||+|..+.. .+... ++ ...+.+++++|+..+.. ....+... ...++ .++++||.
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~~-t~iivTh~ 257 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVGL-TGVIVTKL 257 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHCC-SEEEEECT
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcCC-cEEEEECC
Confidence 1135567899999965432 22221 11 12566899999887643 22233333 23354 67889999
Q ss_pred CCC
Q 006068 182 DRP 184 (662)
Q Consensus 182 D~~ 184 (662)
|..
T Consensus 258 d~~ 260 (304)
T 1rj9_A 258 DGT 260 (304)
T ss_dssp TSS
T ss_pred ccc
Confidence 974
No 243
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.32 E-value=0.00034 Score=72.45 Aligned_cols=122 Identities=12% Similarity=0.111 Sum_probs=64.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCC-CCCccccccccc-----------cccccceeEeeeE-------EEEEecCe
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGA-DIPHERAMDSIS-----------LERERGITIASKV-------TGISWREN 119 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~-~~~~~~v~D~~~-----------~E~ergiTi~~~~-------~~~~~~~~ 119 (662)
+...|+++|+.|+||||++..|...... ....-.+.|.+. .....|+.+.... .--...++
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~~~~ 183 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELFSEY 183 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHGGGS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHhcCC
Confidence 3568999999999999999998754211 000000001000 0001122211000 00012567
Q ss_pred eEEEEeCCCCccchHH----HHHHHh--hcceEEEEeeCCCCchhhHHHHHHHHHHcC-CC-cEEEeccCCCC
Q 006068 120 ELNMVDTPGHADFGGE----VERVVG--MVEGAILVVDAGEGPLAQTKFVLAKALKYG-LR-PILLLNKVDRP 184 (662)
Q Consensus 120 ~iniIDTPGh~dF~~e----v~~~l~--~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~-lp-~IvviNKiD~~ 184 (662)
.+.|+||||....... ....+. ..|.+++|+|+..+.. . +.+.+.... ++ .-+++||+|..
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~-~---~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYE-D---MKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHH-H---HHHHTTTTSSSCCCEEEEECTTTC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHH-H---HHHHHHHHhcCCCCEEEEeCCCcc
Confidence 9999999997654332 223332 2578899999886531 1 222222222 22 24677999975
No 244
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.25 E-value=0.001 Score=67.25 Aligned_cols=66 Identities=12% Similarity=0.093 Sum_probs=49.8
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc--CCCcEEEeccCCCC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY--GLRPILLLNKVDRP 184 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~--~lp~IvviNKiD~~ 184 (662)
..+.+.|||||+... .....++..+|.+|+++.+..........+++.+... ++++.+|+|+++..
T Consensus 143 ~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~~ 210 (267)
T 3k9g_A 143 YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFKKN 210 (267)
T ss_dssp TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEECTT
T ss_pred cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEecccCc
Confidence 357899999998653 4567788899999999998765555555666666666 45677999999653
No 245
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.22 E-value=0.00021 Score=74.37 Aligned_cols=78 Identities=19% Similarity=0.241 Sum_probs=54.8
Q ss_pred HHhhcceEEEEeeCCCCchhhH--HHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCccE
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT--KFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFPV 216 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt--~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~Pv 216 (662)
.+..+|.+++|+|+.++..... ..++..+...++|+++|+||+|+.+. ....+..+++.+.+...|. ++
T Consensus 83 ~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~~~~~~vivlnK~DL~~~--~~~~~~~~~~~~~y~~~g~-------~v 153 (307)
T 1t9h_A 83 PICNVDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIED--QDTEDTIQAYAEDYRNIGY-------DV 153 (307)
T ss_dssp TEECCCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCC--HHHHHHHHHHHHHHHHHTC-------CE
T ss_pred HHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCccCch--hhhHHHHHHHHHHHHhCCC-------eE
Confidence 5788999999999987655443 23444556689999999999999542 1111223445556655553 59
Q ss_pred EEcccccCc
Q 006068 217 LYASAKEGW 225 (662)
Q Consensus 217 i~~SA~~g~ 225 (662)
+++||.+|.
T Consensus 154 ~~~sa~~~~ 162 (307)
T 1t9h_A 154 YLTSSKDQD 162 (307)
T ss_dssp EECCHHHHT
T ss_pred EEEecCCCC
Confidence 999999998
No 246
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.17 E-value=0.00016 Score=71.97 Aligned_cols=65 Identities=15% Similarity=0.169 Sum_probs=50.5
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDR 183 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~ 183 (662)
+.+.+.|||||+.... ....++..+|.+|+|+++..........+.+.+.+.+++. .+++||.+.
T Consensus 130 ~~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 130 DKKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 4789999999986544 4456789999999999986655556666777777888764 589999984
No 247
>1xe1_A Hypothetical protein PF0907; structural genomics, unknown function, protein structure INI secsg, conserved hypothetical protein; HET: MSE; 2.00A {Pyrococcus furiosus} SCOP: b.43.3.1
Probab=97.13 E-value=0.0026 Score=55.60 Aligned_cols=79 Identities=23% Similarity=0.300 Sum_probs=56.5
Q ss_pred CCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE-
Q 006068 260 DAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV- 338 (662)
Q Consensus 260 ~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai- 338 (662)
..|..+.|..+..--| |.+..|||.+|+|++|+.| +.+ . ...+|.+|... .+.+++|.|||.|++
T Consensus 32 ~~P~k~~ilp~~~~vF-gpvivGrVe~G~LK~G~~V---Pg~-----~-~vg~VkSIE~~----~e~v~eA~~GdnVai~ 97 (116)
T 1xe1_A 32 KPAGKVVVEEVVNIMG-KDVIIGTVESGMIGVGFKV---KGP-----S-GIGGIVRIERN----REKVEFAIAGDRIGIS 97 (116)
T ss_dssp SCSEEEEEEEEEEETT-EEEEEEEEEEEEEETTCEE---ECS-----S-CEEEEEEEEET----TEEESEEETTCEEEEE
T ss_pred cCcEEEEEEecCCeEE-CCeeEEEEeEEEEcCCCCc---CCC-----c-eEEEEEEEEEC----CcCcCCcCCCCEEEEE
Confidence 3466666655333334 8899999999999999999 321 0 24568888752 368999999999987
Q ss_pred -cCcC-CCccCceeee
Q 006068 339 -AGMT-KPSIGHTVAN 352 (662)
Q Consensus 339 -~gl~-~~~~GdTl~~ 352 (662)
.|.. ++..||+|..
T Consensus 98 Ikg~~~~I~~GdVLyv 113 (116)
T 1xe1_A 98 IEGKIGKVKKGDVLEI 113 (116)
T ss_dssp EESCCCCCCTTCEEEE
T ss_pred EECCccccCCCcEEEE
Confidence 4544 7788888754
No 248
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.11 E-value=0.00058 Score=70.67 Aligned_cols=123 Identities=20% Similarity=0.184 Sum_probs=65.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccccccc-----------ccccccceeEeeeE-------------EEE
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSI-----------SLERERGITIASKV-------------TGI 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~-----------~~E~ergiTi~~~~-------------~~~ 114 (662)
....++++|..|+||||++..|..........-.+.|.+ ......|+.+.... ..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 456899999999999999998875421100000000000 00011233322110 000
Q ss_pred EecCeeEEEEeCCCCccch----HHHHHHH--hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCC
Q 006068 115 SWRENELNMVDTPGHADFG----GEVERVV--GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (662)
Q Consensus 115 ~~~~~~iniIDTPGh~dF~----~ev~~~l--~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (662)
...++.+.|+||||..... .++.... ..+|.+++|+|+..+ .......+.... .+++ -+|+||+|..
T Consensus 177 ~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~~-~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFDE-KVGVTGLVLTKLDGD 250 (295)
T ss_dssp HHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHHH-HTCCCEEEEECGGGC
T ss_pred HhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHhh-cCCCCEEEEECCCCC
Confidence 0147899999999865332 2222221 247889999998754 222222222222 3553 4889999974
No 249
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.06 E-value=0.00048 Score=71.30 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=45.6
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH----cCCCcE-EEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK----YGLRPI-LLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~----~~lp~I-vviNKiD~ 183 (662)
.+.+.|||||+..... .+..++..+|.+|+|+++.......+..+++.+.+ .+++++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 5899999999865432 12346788999999998765444555556666654 345555 89999994
No 250
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.01 E-value=0.0028 Score=65.08 Aligned_cols=65 Identities=15% Similarity=0.183 Sum_probs=47.8
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH------cCCCcE-EEeccCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK------YGLRPI-LLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~------~~lp~I-vviNKiD~~ 184 (662)
.+.+.|||||+.... ....++..+|.+|+++.+...........++.+.+ .+++++ +|+|++|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 578999999987653 34557778999999999876666555555555544 266755 889999973
No 251
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=96.98 E-value=0.0012 Score=66.49 Aligned_cols=66 Identities=21% Similarity=0.207 Sum_probs=46.0
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH------cCCCcE-EEeccCCCC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK------YGLRPI-LLLNKVDRP 184 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~------~~lp~I-vviNKiD~~ 184 (662)
..+.+.|||||+.... ....++..+|.+|+++.+.......+..+++.+.. .+++++ +|+|++|..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 4688999999987543 35567889999999999875444444444444332 256664 899999864
No 252
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=96.95 E-value=0.0015 Score=64.39 Aligned_cols=66 Identities=23% Similarity=0.218 Sum_probs=51.9
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPA 185 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~ 185 (662)
.+.+.|||||+... .....++..+|.+|+|+++.......+...++.+.+.+.+.+ +|+||+|...
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~~ 177 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRSD 177 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSCT
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCccc
Confidence 57899999998654 566778999999999999876555666777777777777654 8899999643
No 253
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=96.94 E-value=0.0033 Score=64.64 Aligned_cols=67 Identities=21% Similarity=0.262 Sum_probs=54.3
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPA 185 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~ 185 (662)
.+.+.|||||...... ........+|++|+|+.+...........++.+.+.+.+++ +|+||+|...
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~~ 268 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRRA 268 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccccc
Confidence 4679999999976543 33446678999999999988778888888899999998865 8999999743
No 254
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=96.93 E-value=0.0012 Score=66.54 Aligned_cols=65 Identities=12% Similarity=0.256 Sum_probs=51.4
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (662)
.+.+.|||||+... .....++..+|.+|+|+.+.......+...++.+.+.+.+.+ +|+|++|..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 68899999998654 566778899999999998776555666677777777777655 889999963
No 255
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=96.92 E-value=0.0012 Score=66.17 Aligned_cols=64 Identities=14% Similarity=0.233 Sum_probs=48.2
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcC---------CCcEEEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYG---------LRPILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~---------lp~IvviNKiD~ 183 (662)
.+.+.|||||+... .....++..+|.+|+|+++.......+..+++.+...+ ...-+|+|++|.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 68999999998544 46778889999999999987555555556666665444 345689999985
No 256
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=96.86 E-value=0.0028 Score=64.64 Aligned_cols=66 Identities=14% Similarity=0.211 Sum_probs=52.8
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (662)
.+.+.|||||+..... ........+|++|+|+.+...........++.+.+.+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 4689999999975532 33445678999999999988777888888888888899877 899999964
No 257
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.83 E-value=0.0042 Score=67.73 Aligned_cols=26 Identities=35% Similarity=0.446 Sum_probs=23.6
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.++.-|+|+|..++|||||+|+|++.
T Consensus 65 ~~v~vVsV~G~~~~GKStLLN~llg~ 90 (447)
T 3q5d_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRY 90 (447)
T ss_dssp SBEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHhhh
Confidence 35778999999999999999999986
No 258
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=96.78 E-value=0.0015 Score=64.79 Aligned_cols=65 Identities=15% Similarity=0.132 Sum_probs=50.3
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCC---cEEEeccCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLR---PILLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp---~IvviNKiD~~ 184 (662)
.+.+.|||||+..+. ....++..+|.+|+|+.........+..+++.+.+.+.+ .-+|+|++|..
T Consensus 118 ~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 578999999986543 456688999999999998765556667777777777643 45899999964
No 259
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=96.75 E-value=0.0048 Score=63.78 Aligned_cols=66 Identities=21% Similarity=0.249 Sum_probs=53.4
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (662)
.+.+.|||||+..... ........+|.+|+|+.+......+....++.+.+.+++++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 4689999999976543 33345578999999999888878888888888888898876 889999964
No 260
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.55 E-value=0.0078 Score=62.32 Aligned_cols=123 Identities=20% Similarity=0.221 Sum_probs=65.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc--cccccc------c---cccceeEeeeEEE-EE-----------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSISL------E---RERGITIASKVTG-IS----------- 115 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~~------E---~ergiTi~~~~~~-~~----------- 115 (662)
....++++|+.|+|||||+..|.+........-.+ .|.... . ...++.+...... ..
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~v~e~l~~ 178 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 178 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHHHHHHHHH
Confidence 34589999999999999999998653211100000 011000 0 1123443322211 10
Q ss_pred --ecCeeEEEEeCCCCccchH----HHH---HHHh-----hcceEEEEeeCCCCchhhHHHHHHHHH-HcCCCcEEEecc
Q 006068 116 --WRENELNMVDTPGHADFGG----EVE---RVVG-----MVEGAILVVDAGEGPLAQTKFVLAKAL-KYGLRPILLLNK 180 (662)
Q Consensus 116 --~~~~~iniIDTPGh~dF~~----ev~---~~l~-----~aD~aIlVVDa~~G~~~qt~~~l~~~~-~~~lp~IvviNK 180 (662)
..+....++||.|...+.. +.. .++. ..+-++||+|++.|..+... .+... ..++ .+++++|
T Consensus 179 ~~~~~~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~~~~g~-t~iiiTh 255 (302)
T 3b9q_A 179 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNEVVGI-TGLILTK 255 (302)
T ss_dssp HHHTTCSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHHHHTCC-CEEEEEC
T ss_pred HHHcCCcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHHHhcCC-CEEEEeC
Confidence 1234578999999765432 211 1111 24556999998877655433 22332 3454 4678899
Q ss_pred CCCC
Q 006068 181 VDRP 184 (662)
Q Consensus 181 iD~~ 184 (662)
+|..
T Consensus 256 lD~~ 259 (302)
T 3b9q_A 256 LDGS 259 (302)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 9864
No 261
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=96.42 E-value=0.011 Score=62.52 Aligned_cols=84 Identities=20% Similarity=0.285 Sum_probs=54.9
Q ss_pred HHhhcceEEEEeeCCCCchhhH---HHHHHHHHHcCCCcEEEeccCCCCCCCHHHHHHHHHHHHHHHHhcCCCCcCCCcc
Q 006068 139 VVGMVEGAILVVDAGEGPLAQT---KFVLAKALKYGLRPILLLNKVDRPAVSEERCDEVESLVFDLFANLGATDEQLDFP 215 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt---~~~l~~~~~~~lp~IvviNKiD~~~~~~~~~~ei~~~v~~l~~~~g~~~~~~~~P 215 (662)
....+|.+++| ||... .... ..++..+...++|+++|+||+|+.+ ... .+..++....|..+|+ +
T Consensus 127 i~anvD~v~iv-~a~~P-~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~--~~~-~~~~~~~~~~y~~~G~-------~ 194 (358)
T 2rcn_A 127 IAANIDQIVIV-SAILP-ELSLNIIDRYLVGCETLQVEPLIVLNKIDLLD--DEG-MDFVNEQMDIYRNIGY-------R 194 (358)
T ss_dssp EEECCCEEEEE-EESTT-TCCHHHHHHHHHHHHHHTCEEEEEEECGGGCC--HHH-HHHHHHHHHHHHTTTC-------C
T ss_pred HHhcCCEEEEE-EeCCC-CCCHHHHHHHHHHHHhcCCCEEEEEECccCCC--chh-HHHHHHHHHHHHhCCC-------c
Confidence 35678888866 55543 3222 2344555678999999999999953 322 1123344455555554 5
Q ss_pred EEEcccccCccCCccCCCCCCCccchHHHHHHH
Q 006068 216 VLYASAKEGWASSTFTKDPPADVRNMSQLLDAI 248 (662)
Q Consensus 216 vi~~SA~~g~~~~~~~~~~~~~~~gv~~Lld~I 248 (662)
++++||.+|. |++.|...+
T Consensus 195 v~~~Sa~~~~--------------gl~~L~~~~ 213 (358)
T 2rcn_A 195 VLMVSSHTQD--------------GLKPLEEAL 213 (358)
T ss_dssp EEECBTTTTB--------------THHHHHHHH
T ss_pred EEEEecCCCc--------------CHHHHHHhc
Confidence 9999999998 888777653
No 262
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=96.35 E-value=0.0014 Score=67.21 Aligned_cols=34 Identities=18% Similarity=0.311 Sum_probs=28.9
Q ss_pred CeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCC
Q 006068 118 ENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAG 153 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~ 153 (662)
.+.+.|||||+.. ...+..++..+|.+|+++...
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 5789999999975 566778999999999999865
No 263
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.22 E-value=0.011 Score=62.64 Aligned_cols=124 Identities=19% Similarity=0.217 Sum_probs=65.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCcccc--ccccc------cc---cccceeEeeeEEE-E------------
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERA--MDSIS------LE---RERGITIASKVTG-I------------ 114 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v--~D~~~------~E---~ergiTi~~~~~~-~------------ 114 (662)
....|+|+|+.|+|||||+..|.+........-.+ .|... .. ...++.+...... .
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~tv~e~l~~ 235 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATVLSKAVKR 235 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhhHHHHHHH
Confidence 34589999999999999999998753211100000 01100 00 1123333221111 0
Q ss_pred -EecCeeEEEEeCCCCccchHH----HH---HHH-----hhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccC
Q 006068 115 -SWRENELNMVDTPGHADFGGE----VE---RVV-----GMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKV 181 (662)
Q Consensus 115 -~~~~~~iniIDTPGh~dF~~e----v~---~~l-----~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKi 181 (662)
...+....++||.|...+... .. .++ ...+-++||+|++.|..+... ........++ .+++++|+
T Consensus 236 ~~~~~~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g~-t~iiiThl 313 (359)
T 2og2_A 236 GKEEGYDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILTKL 313 (359)
T ss_dssp HHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEESC
T ss_pred HHhCCCHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcCC-eEEEEecC
Confidence 012445789999997654321 11 111 124556999998877654433 1122223454 46789999
Q ss_pred CCC
Q 006068 182 DRP 184 (662)
Q Consensus 182 D~~ 184 (662)
|-.
T Consensus 314 D~~ 316 (359)
T 2og2_A 314 DGS 316 (359)
T ss_dssp TTC
T ss_pred ccc
Confidence 863
No 264
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=96.05 E-value=0.019 Score=57.72 Aligned_cols=66 Identities=18% Similarity=0.181 Sum_probs=42.0
Q ss_pred CeeEEEEeCCCCccchHH-HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHc----CCCc-EEEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGE-VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKY----GLRP-ILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~e-v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~----~lp~-IvviNKiD~ 183 (662)
.+.+.||||||....... ..-....+|.+|+++.+.......+..+++.+... +++. -+|+|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 588999999996432211 11122579999999987654444444455555442 5665 488999974
No 265
>1d1n_A Initiation factor 2; beta-barrel, gene regulation; NMR {Geobacillus stearothermophilus} SCOP: b.43.3.1
Probab=96.02 E-value=0.018 Score=48.97 Aligned_cols=81 Identities=19% Similarity=0.152 Sum_probs=65.0
Q ss_pred eEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--cCcC
Q 006068 265 MLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV--AGMT 342 (662)
Q Consensus 265 ~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai--~gl~ 342 (662)
+.|-+++..+..|.+|=.+|.+|+++.+..+.+.+.+. -....++.+|..+. .++.++.+|.=|+| .+.+
T Consensus 9 AeVr~vF~isk~g~IAGc~V~~G~i~r~~~vRv~Rd~~----vI~eG~i~SLkr~K----ddV~EV~~G~ECGi~l~~~~ 80 (99)
T 1d1n_A 9 AEVRQTFKVSKVGTIAGCYVTDGKITRDSKVRLIRQGI----VVYEGEIDSLKRYK----DDVREVAQGYECGLTIKNFN 80 (99)
T ss_dssp EEECCCCCCSSSCCCEEEEECSSBCCSSSEEEEECSSS----EEEEEECSEEECSS----SCCSCCBTTCEEEEECTTCS
T ss_pred EEEEEEEEcCCceEEEEEEEEcCEEEcCCeEEEEECCE----EEEEeEEhhhcccc----cccceECCCcEEEEEEcCcC
Confidence 44555666677899999999999999999999997531 34567888888775 48999999999987 4778
Q ss_pred CCccCceeeec
Q 006068 343 KPSIGHTVANT 353 (662)
Q Consensus 343 ~~~~GdTl~~~ 353 (662)
|++.||.|-.-
T Consensus 81 dik~GD~Ie~y 91 (99)
T 1d1n_A 81 DIKEGDVIEAY 91 (99)
T ss_dssp SCSSCSEEEEE
T ss_pred CCCCCCEEEEE
Confidence 99999998543
No 266
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=95.81 E-value=0.016 Score=59.19 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=40.9
Q ss_pred CeeEEEEeCCCCccchHH-HHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHH----cCCCc-EEEeccCCC
Q 006068 118 ENELNMVDTPGHADFGGE-VERVVGMVEGAILVVDAGEGPLAQTKFVLAKALK----YGLRP-ILLLNKVDR 183 (662)
Q Consensus 118 ~~~iniIDTPGh~dF~~e-v~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~----~~lp~-IvviNKiD~ 183 (662)
.+.+.||||||....... .......+|.+|+++.+.......+..+++.+.. .++++ -+|+|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 689999999996432111 1122357999999998764333434444444443 26664 478899874
No 267
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.61 E-value=0.0068 Score=66.69 Aligned_cols=106 Identities=11% Similarity=0.145 Sum_probs=61.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccc-cceeEeeeEEEEEecCeeEEEEeCCCCccc--hHHH
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERE-RGITIASKVTGISWRENELNMVDTPGHADF--GGEV 136 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~e-rgiTi~~~~~~~~~~~~~iniIDTPGh~dF--~~ev 136 (662)
..+|+++|.+|+||||+..+|....+.........+......+ .| ......++|+.|...| ....
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g------------~~~~~~ifd~~g~~~~r~re~~ 106 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVK------------TYKSFEFFLPDNEEGLKIRKQC 106 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHC------------SCCCGGGGCTTCHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhcc------------CCCcccccCCCCHHHHHHHHHH
Confidence 4589999999999999999998764311111000000000000 00 0123457788887332 2221
Q ss_pred --------HHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEE
Q 006068 137 --------ERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILL 177 (662)
Q Consensus 137 --------~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~Ivv 177 (662)
..++...++.++|+|++......-..++..+.+.+.+++++
T Consensus 107 ~~~~l~~~~~~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l 155 (469)
T 1bif_A 107 ALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFV 155 (469)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEE
Confidence 44455578889999998865444445556677777765544
No 268
>2crv_A IF-2MT, translation initiation factor IF-2; ribosome, beta barrel, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=95.42 E-value=0.097 Score=46.01 Aligned_cols=83 Identities=18% Similarity=0.068 Sum_probs=64.6
Q ss_pred eeEEEeeeeecccce---EEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEeecCCceeeecccCCCCEEEE--
Q 006068 264 QMLVTMMEKDFYLGR---ILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKKKGTGMVLIDSAGAGDIISV-- 338 (662)
Q Consensus 264 ~~~V~~~~~~~~~G~---i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~~g~~~~~v~~a~AGdIvai-- 338 (662)
.+.|-+++..+..|+ +|=.+|.+|+++.+..+.+.+.+. -..+.++.+|.++. .+|.++.+|.=|+|
T Consensus 12 ~AeVr~vF~isk~g~~~~IAGC~V~~G~i~r~~~vRviRdg~----vI~eG~i~SLkrfK----dDVkEV~~G~ECGi~l 83 (120)
T 2crv_A 12 EASILATFTVTEGKKKIPVADCRVQKGQLERHKKFKLIRNGQ----VIWKGSLTSLKHHK----DDISVIKTGMDCGLSL 83 (120)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEESCEETTSCEEEEETTE----EEEEECCSEEESSS----SCCSEECTTCEEEEEC
T ss_pred EEEEeEEEEeCCCCceeEEeEEEEEcCEEEcCCeEEEEECCE----EEEEeEehhhcccc----cccceecCCCEEEEEE
Confidence 445556666666677 999999999999999999997531 23456788887765 48999999999987
Q ss_pred cCcC-CCccCceeeecC
Q 006068 339 AGMT-KPSIGHTVANTE 354 (662)
Q Consensus 339 ~gl~-~~~~GdTl~~~~ 354 (662)
.+.+ |++.||+|-.-+
T Consensus 84 ~~fniDik~GDiIE~ye 100 (120)
T 2crv_A 84 DEEKVEFKPGDQVICYE 100 (120)
T ss_dssp SCTTSCCCTTEEEEEEC
T ss_pred ccCCCCCCCCCEEEEEE
Confidence 4778 899999995543
No 269
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=95.32 E-value=0.017 Score=60.19 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=23.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
++..++|+|..|+|||||++.|+...
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 36689999999999999999999764
No 270
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=95.15 E-value=0.21 Score=52.44 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=36.5
Q ss_pred cceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCCC
Q 006068 143 VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPA 185 (662)
Q Consensus 143 aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~ 185 (662)
.+++++|.-...-....++..+..+.+.++|+. +|+|++....
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~~ 280 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPED 280 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCSC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCcccc
Confidence 478899988877777888999999999999985 8899998753
No 271
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.91 E-value=0.0065 Score=63.05 Aligned_cols=23 Identities=13% Similarity=0.351 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..++|+|++|+|||||++.|+..
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-
T ss_pred CEEEEECCCCCCHHHHHHHhccc
Confidence 58999999999999999999764
No 272
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.84 E-value=0.033 Score=57.54 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..++++|++|+|||||++.|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 478999999999999999999 53
No 273
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=94.72 E-value=0.32 Score=50.43 Aligned_cols=41 Identities=17% Similarity=0.186 Sum_probs=35.3
Q ss_pred ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCC
Q 006068 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (662)
Q Consensus 144 D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (662)
+++++|.-+..-....++..+..+.+.|+|+. +|+|++...
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 58899988877777888899999999999985 899999875
No 274
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.70 E-value=0.013 Score=62.16 Aligned_cols=24 Identities=25% Similarity=0.313 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..++|+|++|+|||||++.|+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 379999999999999999998653
No 275
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.68 E-value=0.18 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.158 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...|+|+|.+|+||||+...|...
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~ 36 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADL 36 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 468999999999999999999766
No 276
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.32 E-value=0.095 Score=56.57 Aligned_cols=90 Identities=13% Similarity=0.107 Sum_probs=54.1
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcCCCCCccccccccccccccceeEeeeEEEEEecCeeEEEEeCCCCccchHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCGADIPHERAMDSISLERERGITIASKVTGISWRENELNMVDTPGHADFGGEVER 138 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g~~~~~~~v~D~~~~E~ergiTi~~~~~~~~~~~~~iniIDTPGh~dF~~ev~~ 138 (662)
...-|+|+|.+|+|||||..+|....+.. +.|.+.. ..+......+..
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~-----~i~~D~~---------------------------~~~~~~~~~~~~ 304 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV-----HVNRDTL---------------------------GSWQRCVSSCQA 304 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCE-----ECCGGGS---------------------------CSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcE-----EEccchH---------------------------HHHHHHHHHHHH
Confidence 45679999999999999999998764321 1111111 011122233333
Q ss_pred HHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCC
Q 006068 139 VVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 139 ~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (662)
.+. .+..+|+|+......+-..++..+.+.+.++.++.-.++
T Consensus 305 ~l~--~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~ 346 (416)
T 3zvl_A 305 ALR--QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCAT 346 (416)
T ss_dssp HHH--TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred HHh--cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 333 334456898876655556667777888888765554444
No 277
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=94.22 E-value=0.48 Score=49.76 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=34.8
Q ss_pred ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCCC
Q 006068 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRPA 185 (662)
Q Consensus 144 D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~~ 185 (662)
+++++|.-+..-....+...+..+...|+|+. +|+|++....
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~~~ 274 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLFAE 274 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECCCC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCcccc
Confidence 57888888777667788899999999999974 8999998643
No 278
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.21 E-value=0.026 Score=53.53 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
+++|+|+.|+|||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999874
No 279
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.20 E-value=0.023 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
+.++|+|++|+|||||++.|+..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999875
No 280
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.09 E-value=0.034 Score=52.51 Aligned_cols=24 Identities=8% Similarity=0.342 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..++|+|++|+|||||++.|+...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 479999999999999999999763
No 281
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=93.84 E-value=0.2 Score=54.44 Aligned_cols=75 Identities=27% Similarity=0.270 Sum_probs=45.5
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhc----CC------CCCccccc-cccccccccceeEeeeEEEEEe---cCeeEEE
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQC----GA------DIPHERAM-DSISLERERGITIASKVTGISW---RENELNM 123 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~----g~------~~~~~~v~-D~~~~E~ergiTi~~~~~~~~~---~~~~ini 123 (662)
.++.-|+|+|..++|||+|+|.|+... +. .....-+. -.......+||-+......+.. .+..+.+
T Consensus 65 ~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vll 144 (457)
T 4ido_A 65 KEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLL 144 (457)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEE
T ss_pred CceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEE
Confidence 457889999999999999999877532 10 00000000 0112334567766655444433 2467999
Q ss_pred EeCCCCccc
Q 006068 124 VDTPGHADF 132 (662)
Q Consensus 124 IDTPGh~dF 132 (662)
+||.|..|-
T Consensus 145 lDTEG~~d~ 153 (457)
T 4ido_A 145 MDTQGTFDS 153 (457)
T ss_dssp EEECCBTCT
T ss_pred EeccCCCCc
Confidence 999997653
No 282
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=93.61 E-value=0.047 Score=52.74 Aligned_cols=26 Identities=19% Similarity=0.344 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.-+-|+|+|++|+|||||+++|+...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34679999999999999999999764
No 283
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.59 E-value=0.044 Score=51.76 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..|+|+|++|+|||||++.|...
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 357999999999999999999875
No 284
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.50 E-value=0.036 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
+-++|+|+.|+|||||++.|+...
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999999763
No 285
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.46 E-value=0.038 Score=53.37 Aligned_cols=25 Identities=24% Similarity=0.202 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
-..++|+|+.|||||||++.|.+..
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3479999999999999999998764
No 286
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.42 E-value=0.04 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..|+|+|++|||||||++.|....
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 369999999999999999998763
No 287
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=93.40 E-value=0.17 Score=57.14 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=34.1
Q ss_pred ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCC
Q 006068 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (662)
Q Consensus 144 D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (662)
+.+++|+.+.......+...++.+.+.+++.. +|+|+++..
T Consensus 199 t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 199 TRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred cEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 36899998877777888889999999999875 789999864
No 288
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.22 E-value=0.22 Score=45.55 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..++|+|++|+|||||+..+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~ 59 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQ 59 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 358999999999999999999886
No 289
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=93.17 E-value=0.052 Score=52.43 Aligned_cols=24 Identities=29% Similarity=0.274 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..|+|+|++|+|||||++.|...
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999875
No 290
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.13 E-value=0.28 Score=51.76 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.|+|+|+.|||||||++.|+..
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 37999999999999999999875
No 291
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=93.09 E-value=0.056 Score=51.99 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...|+|+|+.|+|||||++.|...
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999876
No 292
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=93.08 E-value=0.047 Score=53.40 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
-..++|+|+.|+|||||++.|+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3469999999999999999998764
No 293
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=93.03 E-value=0.084 Score=51.25 Aligned_cols=25 Identities=16% Similarity=0.315 Sum_probs=22.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+++.|.|++|+|||||+.++....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998763
No 294
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=92.94 E-value=0.058 Score=49.99 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.+|+|+|.+|+|||||...|....+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988744
No 295
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=92.86 E-value=0.4 Score=53.97 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=35.6
Q ss_pred hcceEEEEeeCCCCchhhHHHHHHHHHHcCCCc-EEEeccCCCC
Q 006068 142 MVEGAILVVDAGEGPLAQTKFVLAKALKYGLRP-ILLLNKVDRP 184 (662)
Q Consensus 142 ~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~-IvviNKiD~~ 184 (662)
.+|.+++|+.+.......+...++.+.+.|++. -+|+|+++-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 468999998877766778888899999999986 4889999864
No 296
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=92.81 E-value=0.069 Score=50.92 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..|+|+|++|+|||||++.|....
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 479999999999999999998753
No 297
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.77 E-value=0.058 Score=50.14 Aligned_cols=24 Identities=29% Similarity=0.289 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
-.++++|+.|+|||||++.|.+..
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 369999999999999999999874
No 298
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=92.77 E-value=0.057 Score=53.02 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.-++|+|+.|+|||||++.|+...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 479999999999999999998864
No 299
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=92.64 E-value=0.076 Score=50.87 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.-..|+|+|.+|+|||||++.|....|
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 345899999999999999999987754
No 300
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.62 E-value=0.069 Score=49.19 Aligned_cols=25 Identities=12% Similarity=-0.005 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|+|.+|+||||+.+.|....+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3799999999999999999987754
No 301
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.55 E-value=0.081 Score=49.98 Aligned_cols=24 Identities=33% Similarity=0.464 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.+-++|+|.+|+|||||+++|+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHh
Confidence 467999999999999999999875
No 302
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=92.49 E-value=0.081 Score=51.11 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
-.-|+|+|++|+|||||++.|+...
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3579999999999999999999764
No 303
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=92.48 E-value=0.093 Score=48.77 Aligned_cols=26 Identities=12% Similarity=0.149 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
-..|+|+|++|+|||||...|....|
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 35799999999999999999987654
No 304
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=92.40 E-value=0.063 Score=50.21 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=18.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLL 81 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll 81 (662)
--++|+|++|||||||++.++
T Consensus 10 ei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 368999999999999999854
No 305
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=92.37 E-value=0.071 Score=51.02 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
|-|+|+|++|+|||||+++|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 348999999999999999999763
No 306
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.36 E-value=0.09 Score=49.19 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=23.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.++|+|+|.+|+||||+...|....+
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 46899999999999999999987654
No 307
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=92.30 E-value=0.25 Score=50.25 Aligned_cols=25 Identities=20% Similarity=0.248 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..++.|.|++|+|||+|+..|....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3489999999999999999998764
No 308
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=92.27 E-value=0.086 Score=48.37 Aligned_cols=24 Identities=17% Similarity=0.360 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|+|.+|+||||+.+.| ...|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 36999999999999999999 5544
No 309
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=92.15 E-value=0.89 Score=47.19 Aligned_cols=40 Identities=13% Similarity=0.101 Sum_probs=33.9
Q ss_pred ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCC
Q 006068 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDR 183 (662)
Q Consensus 144 D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~ 183 (662)
+++++|..........+...+..+...|+|+. +|+|++..
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 47888888877677788899999999999976 78999984
No 310
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.13 E-value=0.095 Score=50.12 Aligned_cols=27 Identities=22% Similarity=0.292 Sum_probs=23.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGA 86 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (662)
..+|+|+|.+|+||||+...|....+.
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999887653
No 311
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=92.13 E-value=0.093 Score=49.38 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.+.|+|+|..|+|||||+.+|+..
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999875
No 312
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.12 E-value=0.11 Score=55.19 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=28.7
Q ss_pred cCeeEEEEeCCCCccchHHHHHHHhhcceEEEEeeCCC
Q 006068 117 RENELNMVDTPGHADFGGEVERVVGMVEGAILVVDAGE 154 (662)
Q Consensus 117 ~~~~iniIDTPGh~dF~~ev~~~l~~aD~aIlVVDa~~ 154 (662)
..+.+.|||||. .....+..++..||.+|+|+.+..
T Consensus 258 ~~yD~VIID~p~--~~~~~~~~~l~~aD~vivv~~~~~ 293 (373)
T 3fkq_A 258 DNYDEIIVDLPF--SLEIEKLKLLSKAWRIIVVNDGSQ 293 (373)
T ss_dssp SCCSEEEEECCC--CCCHHHHHHHTTCSEEEEEECCCH
T ss_pred CCCCEEEEeCCC--CCCHHHHHHHHHCCEEEEEecCCc
Confidence 467899999994 344567788999999999987754
No 313
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=92.00 E-value=0.13 Score=49.12 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=23.6
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+.+.|+|+|.+|+||||+...|....+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 456899999999999999999987654
No 314
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.99 E-value=0.31 Score=48.49 Aligned_cols=27 Identities=15% Similarity=0.103 Sum_probs=23.3
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
....|+++|.+|+||||+...|....+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 346899999999999999999987743
No 315
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=91.97 E-value=0.091 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+.|+|+|++|+|||||++.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3579999999999999999998764
No 316
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=91.97 E-value=0.048 Score=51.39 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..|+|+|.+|+|||||++.|+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999876
No 317
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=91.95 E-value=0.061 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+.
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999764
No 318
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=91.90 E-value=0.067 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.273 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998754
No 319
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=91.69 E-value=0.098 Score=49.37 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.++|+|++|+|||||++.|...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~ 25 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQ 25 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhcc
Confidence 6899999999999999999864
No 320
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.68 E-value=0.73 Score=48.10 Aligned_cols=40 Identities=15% Similarity=0.154 Sum_probs=33.5
Q ss_pred ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCC
Q 006068 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDR 183 (662)
Q Consensus 144 D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~ 183 (662)
+++++|.-+..-....+++.+..+.+.|+|+. +|+|++.-
T Consensus 223 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 223 TTFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eeEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 47888887776667788899999999999985 88999874
No 321
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=91.59 E-value=0.11 Score=49.49 Aligned_cols=26 Identities=19% Similarity=0.478 Sum_probs=22.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
...|+|+|.+|+|||||+..|....|
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987754
No 322
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=91.56 E-value=0.14 Score=48.26 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..+|+|+|.+|+||||+...|...
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 468999999999999999999876
No 323
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.56 E-value=0.23 Score=48.14 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+|.|+|++||||+|+...|....|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 689999999999999999998755
No 324
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=91.55 E-value=0.45 Score=49.77 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
--+.|.|.+|+|||||+-.++..
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~ 69 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLS 69 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999999888765
No 325
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=91.52 E-value=0.086 Score=52.48 Aligned_cols=23 Identities=9% Similarity=0.248 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999865
No 326
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=91.49 E-value=0.11 Score=50.42 Aligned_cols=25 Identities=16% Similarity=0.150 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|+|++|+||||+.+.|....|
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987644
No 327
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.46 E-value=0.11 Score=48.59 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=23.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGA 86 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (662)
.++|+++|.+|+||||+...|....+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 458999999999999999999887553
No 328
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.41 E-value=0.25 Score=49.43 Aligned_cols=24 Identities=17% Similarity=0.214 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...|+|+|.+|+||||+...|...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999875
No 329
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=91.39 E-value=0.11 Score=52.50 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHh
Confidence 47999999999999999999875
No 330
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.34 E-value=0.11 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.388 Sum_probs=22.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|+|++|+|||||++.|....|
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5899999999999999999996644
No 331
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=91.32 E-value=0.12 Score=49.31 Aligned_cols=24 Identities=17% Similarity=0.429 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.+|+|+|.+|+||||+.+.|.. .|
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC
Confidence 3799999999999999999987 44
No 332
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=91.31 E-value=0.1 Score=53.86 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..++|+|++|+|||||++.|++.
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhh
Confidence 358999999999999999999876
No 333
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.30 E-value=0.092 Score=51.06 Aligned_cols=22 Identities=27% Similarity=0.074 Sum_probs=20.4
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.++|+|+.|+|||||++.|.+.
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 334
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.26 E-value=0.1 Score=49.86 Aligned_cols=23 Identities=26% Similarity=0.258 Sum_probs=20.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.++|+|+.|+|||||+..|++..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58999999999999999988753
No 335
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=91.18 E-value=0.13 Score=48.83 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=21.7
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.|+|+|.+|+||||++..|....+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 699999999999999999988654
No 336
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=91.17 E-value=0.67 Score=48.31 Aligned_cols=25 Identities=24% Similarity=0.347 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...++.|.|++|+|||||+..+...
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~ 67 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRR 67 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHH
Confidence 3568999999999999999999876
No 337
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=91.12 E-value=0.11 Score=48.77 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.+++|+|++|+|||||+.++...
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~ 61 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKA 61 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999876
No 338
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=91.11 E-value=0.09 Score=52.19 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999764
No 339
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.08 E-value=0.093 Score=51.78 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999765
No 340
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=91.06 E-value=0.086 Score=53.19 Aligned_cols=23 Identities=17% Similarity=0.278 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999764
No 341
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.06 E-value=0.1 Score=52.28 Aligned_cols=23 Identities=26% Similarity=0.212 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999863
No 342
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=91.01 E-value=0.59 Score=48.21 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..+|.|.|++|+|||+|+.++....
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 4579999999999999999997763
No 343
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.98 E-value=0.13 Score=47.67 Aligned_cols=22 Identities=18% Similarity=0.302 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLR 82 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (662)
..|+|+|.+|+||||+...|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4699999999999999999987
No 344
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=90.97 E-value=0.62 Score=51.41 Aligned_cols=103 Identities=19% Similarity=0.159 Sum_probs=72.9
Q ss_pred HHHHHHHhhC---CCCCCCCCCCceeEEEeeeeecccceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEEee
Q 006068 243 QLLDAIIRHV---PPPKASLDAPFQMLVTMMEKDFYLGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLMKK 319 (662)
Q Consensus 243 ~Lld~I~~~l---P~p~~~~~~p~~~~V~~~~~~~~~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~~~ 319 (662)
.|+|.+..++ -+|.....---.+.|-.++..+..|.++=++|..|+++.|..+.+.+.+. .....+|.+|..+
T Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~~g~a~v~~~f~~~~~~~iaG~~v~~G~~~~~~~~~~~r~~~----~i~~g~i~sl~~~ 461 (501)
T 1zo1_I 386 NLIDEVKAAMSGMLSPELKQQIIGLAEVRDVFKSPKFGAIAGCMVTEGVVKRHNPIRVLRDNV----VIYEGELESLRRF 461 (501)
T ss_dssp HHHHHTHHHHTTTSSTTCCCCCCCCEEEEECSSCCCSSCEEEEEEEEEEEETTCEEECCSSSC----CCEEEEBCCEEET
T ss_pred HHHHHHHHHHHhhcCceeeeeeeeEEEEEEEEecCCCCEEEEEEEEeCEEecCCeEEEEeCCe----EEEEEEEehhccc
Confidence 5665554433 23433333333445556666666799999999999999999999986431 2356788888766
Q ss_pred cCCceeeecccCCCCEEEE--cCcCCCccCceeeec
Q 006068 320 KGTGMVLIDSAGAGDIISV--AGMTKPSIGHTVANT 353 (662)
Q Consensus 320 ~g~~~~~v~~a~AGdIvai--~gl~~~~~GdTl~~~ 353 (662)
. .+++++..|.-|+| .+..++..||.|-.-
T Consensus 462 k----~~v~e~~~g~ecgi~~~~~~~~~~gd~~~~~ 493 (501)
T 1zo1_I 462 K----DDVNEVRNGMECGIGVKNYNDVRTGDVIEVF 493 (501)
T ss_dssp T----EEESEEETTCCEEEEBCCCTTCCTTCEEEEC
T ss_pred C----ccccEECCCCEEEEEEcCcCCCCCCCEEEEE
Confidence 4 58999999999887 467789999998553
No 345
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=90.96 E-value=0.15 Score=48.82 Aligned_cols=25 Identities=24% Similarity=0.060 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
-..|+|+|.+|+|||||...|....
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998763
No 346
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=90.96 E-value=0.14 Score=47.91 Aligned_cols=25 Identities=16% Similarity=0.146 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|.|.+|+||||++..|....+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3699999999999999999987643
No 347
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=90.96 E-value=0.096 Score=52.14 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999765
No 348
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.95 E-value=0.15 Score=52.87 Aligned_cols=25 Identities=24% Similarity=0.096 Sum_probs=22.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
....|+|+|++|+|||||++.|...
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhh
Confidence 4568999999999999999999876
No 349
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=90.95 E-value=0.088 Score=52.92 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999764
No 350
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=90.94 E-value=0.087 Score=53.31 Aligned_cols=23 Identities=35% Similarity=0.374 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999765
No 351
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.92 E-value=0.15 Score=47.38 Aligned_cols=25 Identities=16% Similarity=0.153 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|.|+|.+|+||||+...|....+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999998754
No 352
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=90.88 E-value=0.091 Score=53.46 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+.
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999764
No 353
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.87 E-value=0.15 Score=48.78 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=22.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
...|+|+|.+|+|||||++.|....
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 4589999999999999999998753
No 354
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=90.82 E-value=0.096 Score=51.23 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.++|+|+.|+|||||++.|++.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999765
No 355
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=90.79 E-value=0.1 Score=52.21 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999765
No 356
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=90.75 E-value=0.3 Score=44.05 Aligned_cols=24 Identities=17% Similarity=-0.013 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+|.|.|.+|+|||+|+.++...+
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 579999999999999999998763
No 357
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.74 E-value=0.095 Score=52.09 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999764
No 358
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.72 E-value=0.13 Score=49.72 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|++|+|||||+..|+..
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999874
No 359
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=90.68 E-value=0.29 Score=50.86 Aligned_cols=23 Identities=30% Similarity=0.286 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
+.+.|.|++|+|||||+.++...
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45789999999999999999875
No 360
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=90.62 E-value=0.11 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.498 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl 69 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRF 69 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999765
No 361
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=90.61 E-value=0.19 Score=49.22 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=24.1
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.+.+.|.|+|++||||+|+...|...-+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 4456789999999999999999988765
No 362
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=90.56 E-value=0.12 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 37999999999999999999864
No 363
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.55 E-value=0.2 Score=46.81 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.+.|+|+|.+|+||||+...|....+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987654
No 364
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.48 E-value=0.18 Score=47.36 Aligned_cols=26 Identities=31% Similarity=0.259 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
...|+|+|.+|+||||+...|....+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35799999999999999999987644
No 365
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=90.48 E-value=0.13 Score=49.11 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=20.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLR 82 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (662)
..|+|+|.+||||||+.+.|..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999976
No 366
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=90.47 E-value=0.19 Score=47.61 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...|+|+|.+||||||+...|...
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 468999999999999999999886
No 367
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=90.45 E-value=0.11 Score=52.61 Aligned_cols=23 Identities=30% Similarity=0.302 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcC
Confidence 47999999999999999999764
No 368
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=90.44 E-value=0.52 Score=44.55 Aligned_cols=24 Identities=21% Similarity=0.201 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..++.|.|++|+|||+|+..+...
T Consensus 38 ~~~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 346999999999999999999875
No 369
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.42 E-value=0.13 Score=50.39 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLR 82 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (662)
-.++|+|+.|+|||||+..|+.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHH
Confidence 4799999999999999999883
No 370
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.38 E-value=0.17 Score=50.16 Aligned_cols=26 Identities=19% Similarity=0.321 Sum_probs=22.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
-..|+|+|+.|+|||||++.|....|
T Consensus 25 g~iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 25 PFLIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45799999999999999999987543
No 371
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=90.32 E-value=0.76 Score=48.01 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
+++.|.|++|+|||||+..+....
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998774
No 372
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=90.32 E-value=0.11 Score=52.00 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999765
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.27 E-value=0.16 Score=48.86 Aligned_cols=24 Identities=17% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987654
No 374
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=90.27 E-value=0.11 Score=52.19 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 37999999999999999999764
No 375
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=90.22 E-value=0.16 Score=47.24 Aligned_cols=24 Identities=29% Similarity=0.476 Sum_probs=21.8
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+|+|+|.+|+||||+...|....+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 699999999999999999987755
No 376
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.21 E-value=0.17 Score=48.71 Aligned_cols=24 Identities=25% Similarity=0.448 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987654
No 377
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=90.18 E-value=0.21 Score=47.03 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=22.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
...|+|+|.+|+||||+...|....+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987654
No 378
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=90.18 E-value=0.17 Score=47.26 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+++|.+|+||||+...|....+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987644
No 379
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=90.14 E-value=0.18 Score=47.12 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|.|.+|+||||+...|....+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987543
No 380
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=90.11 E-value=0.12 Score=52.33 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999765
No 381
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=90.08 E-value=1.3 Score=44.12 Aligned_cols=65 Identities=22% Similarity=0.245 Sum_probs=46.5
Q ss_pred CeeEEEEeCCCCc-----cc-hHHHHHHHhhcceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCC
Q 006068 118 ENELNMVDTPGHA-----DF-GGEVERVVGMVEGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVD 182 (662)
Q Consensus 118 ~~~iniIDTPGh~-----dF-~~ev~~~l~~aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD 182 (662)
.+.+.|||+||-. +. .....-+-....-+|||+|+..|...++...++.+...++++. +++||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 5689999999732 11 1112222233466999999998888888877887888899986 8899985
No 382
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=90.08 E-value=0.1 Score=51.15 Aligned_cols=24 Identities=29% Similarity=0.344 Sum_probs=16.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHH-Hh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLL-RQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll-~~ 83 (662)
-..|+|+|+.|+|||||++.|. ..
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~ 51 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQ 51 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC--
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcC
Confidence 3579999999999999999998 65
No 383
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=90.04 E-value=0.12 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 37999999999999999998754
No 384
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=90.02 E-value=0.2 Score=52.14 Aligned_cols=26 Identities=19% Similarity=0.077 Sum_probs=22.5
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
....-|+|+|++|||||||++.|...
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34568999999999999999998765
No 385
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=89.98 E-value=1.3 Score=42.50 Aligned_cols=67 Identities=19% Similarity=0.129 Sum_probs=44.8
Q ss_pred CeeEEEEeCCCCccc--h--HHHHHHHhhc-ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcE-EEeccCCCC
Q 006068 118 ENELNMVDTPGHADF--G--GEVERVVGMV-EGAILVVDAGEGPLAQTKFVLAKALKYGLRPI-LLLNKVDRP 184 (662)
Q Consensus 118 ~~~iniIDTPGh~dF--~--~ev~~~l~~a-D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~I-vviNKiD~~ 184 (662)
.+.+.||||||...- . .......... +.+|+|+++..+...++...++.+...+++++ +|+|++|..
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~~ 180 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTPP 180 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSSC
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCCc
Confidence 688999999975431 0 0111222222 35888888866556667777777777888866 889999964
No 386
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=89.94 E-value=0.13 Score=52.38 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999765
No 387
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=89.90 E-value=0.12 Score=51.76 Aligned_cols=22 Identities=41% Similarity=0.517 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.++|+|+.|+|||||++.|.+.
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999765
No 388
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.89 E-value=0.19 Score=47.04 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=22.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|+|.+|+||||+...|....+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987654
No 389
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=89.87 E-value=0.21 Score=51.20 Aligned_cols=25 Identities=8% Similarity=-0.057 Sum_probs=22.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
+...|+|+|++|+|||||++.|...
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~ 54 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNH 54 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3467999999999999999998876
No 390
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=89.83 E-value=0.22 Score=49.65 Aligned_cols=26 Identities=23% Similarity=0.171 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
...|+|+|+.|||||||+..|....|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg 52 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLN 52 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34899999999999999999986644
No 391
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=89.83 E-value=0.14 Score=54.10 Aligned_cols=23 Identities=39% Similarity=0.611 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.+++|+|+.|+|||||++.|+..
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHhc
Confidence 48999999999999999999876
No 392
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=89.80 E-value=0.22 Score=48.98 Aligned_cols=42 Identities=12% Similarity=-0.086 Sum_probs=27.5
Q ss_pred ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCCCC
Q 006068 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDRPA 185 (662)
Q Consensus 144 D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~~~ 185 (662)
+.-+++||-..-......+.+..+...++++|++.-..|-.+
T Consensus 89 ~~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~ 130 (223)
T 2b8t_A 89 ETKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG 130 (223)
T ss_dssp TCCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred CCCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence 356888895443333444455555567999999998888643
No 393
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=89.78 E-value=0.23 Score=47.49 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...|+|+|.+|+|||||++.|...
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~ 45 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQT 45 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999998764
No 394
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.74 E-value=1.1 Score=46.50 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+++|+|+.|+|||||++.|+...
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998763
No 395
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=89.70 E-value=1.3 Score=45.06 Aligned_cols=24 Identities=21% Similarity=0.275 Sum_probs=21.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+|.|.|++|+|||+|+.++....
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998763
No 396
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=89.66 E-value=0.19 Score=46.91 Aligned_cols=24 Identities=25% Similarity=0.353 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..+|+|+.|+|||||+++|....+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 578999999999999999988654
No 397
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.60 E-value=0.86 Score=50.41 Aligned_cols=26 Identities=23% Similarity=0.289 Sum_probs=23.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.+.+.|.|++|+|||||+.++....+
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~ 102 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG 102 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 47899999999999999999998753
No 398
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=89.43 E-value=0.24 Score=48.24 Aligned_cols=26 Identities=19% Similarity=0.302 Sum_probs=22.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
...|+|+|.+|+||||+...|....+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999987654
No 399
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.36 E-value=0.23 Score=46.82 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|+|.+|+||||+...|....+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999988755
No 400
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.31 E-value=0.24 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...|+|+|+.|+|||||++.|...
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQAL 103 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999875
No 401
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=89.26 E-value=0.15 Score=52.50 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..++++|++|+|||||++.|+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 478999999999999999998653
No 402
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=89.25 E-value=0.18 Score=53.36 Aligned_cols=23 Identities=30% Similarity=0.291 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+.
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 36899999999999999999875
No 403
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=89.21 E-value=0.24 Score=49.20 Aligned_cols=27 Identities=15% Similarity=0.266 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+...|+|.|.+|+||||+...|....+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 356899999999999999999987544
No 404
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=89.15 E-value=0.18 Score=49.37 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=22.2
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.+-..|+|+|..|+|||||++.|...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34468999999999999999998765
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.15 E-value=0.23 Score=45.71 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=23.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcCC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCGA 86 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (662)
..||+|.|.+|+||||+...|....|.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 469999999999999999999876553
No 406
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=89.13 E-value=0.25 Score=54.88 Aligned_cols=40 Identities=20% Similarity=0.271 Sum_probs=27.6
Q ss_pred cceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCC
Q 006068 143 VEGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVD 182 (662)
Q Consensus 143 aD~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD 182 (662)
..+-.+|+|++.+....-..+...+.+.+.+++++--.+|
T Consensus 117 ~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~ 156 (520)
T 2axn_A 117 EGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCD 156 (520)
T ss_dssp SCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECC
T ss_pred cCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCC
Confidence 3567889999887766666666777778887665533333
No 407
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=89.12 E-value=0.24 Score=47.96 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.+|+|+|.+|+||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999987754
No 408
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=89.09 E-value=0.28 Score=46.91 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...|+|.|.+|+||||+++.|...
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999999865
No 409
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.07 E-value=0.25 Score=47.02 Aligned_cols=25 Identities=16% Similarity=-0.017 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|.|.+|+||||+++.|....+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999987643
No 410
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=89.07 E-value=0.17 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTS
T ss_pred CEEEEECCCCCcHHHHHHHHhcC
Confidence 47999999999999999999765
No 411
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=89.05 E-value=0.27 Score=46.68 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..|+|+|.+|+||||+++.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 57999999999999999999876
No 412
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.05 E-value=0.18 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.238 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+-
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHhcC
Confidence 47899999999999999999865
No 413
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=89.03 E-value=0.17 Score=51.07 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.++|+|+.|+|||||++.|.+.
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999765
No 414
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=88.99 E-value=1.5 Score=48.87 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=71.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCCCceeEEEeeeeecc---cceEEEEEEeeceeccCCEEEEeeccCCCCcceEEeEEEeEE
Q 006068 241 MSQLLDAIIRHVPPPKASLDAPFQMLVTMMEKDFY---LGRILTGRVSSGVVSVGDKVHGLRITDSGTEKIEEGKVTKLM 317 (662)
Q Consensus 241 v~~Lld~I~~~lP~p~~~~~~p~~~~V~~~~~~~~---~G~i~~gRV~sG~l~~Gd~V~~~~~~~~~~~~~~~~kI~~i~ 317 (662)
++++-+++...++ |.....-.-.+.|-+++..+. .|.++=++|..|+++.|..+.+.+.+. .....+|.+|.
T Consensus 427 ~~~~~~~~~~~l~-~~~~e~~~g~a~v~~~f~~~~~~~~~~iaG~~v~~G~i~~~~~~r~~r~~~----~i~~g~i~slk 501 (537)
T 3izy_P 427 IEDLQEELSSRLP-CIVEEHPIGEASILATFSITEGKKKVPVAGCRVQKGQIEKQKKFKLIRNGH----VIWKGSLISLK 501 (537)
T ss_dssp HHHHHHHHSSSSS-CSSSCCCSSEEEEEEEESSCSSSCCSCEEEEEECSSEEESSSEEEEESSSS----EEEEEECCCCC
T ss_pred HHHHHHHHHhccC-CceEEEEEEEEEEcCcEEECCCCccCcEEEEEEEeCeEeeCCeEEEecCCE----EEEEEEEehhc
Confidence 4555555555444 333333334555555555442 578999999999999999999997431 23556777776
Q ss_pred eecCCceeeecccCCCCEEEEc--C-cCCCccCceee
Q 006068 318 KKKGTGMVLIDSAGAGDIISVA--G-MTKPSIGHTVA 351 (662)
Q Consensus 318 ~~~g~~~~~v~~a~AGdIvai~--g-l~~~~~GdTl~ 351 (662)
.+. .++.++..|.=|+|. + +.+++.||+|-
T Consensus 502 ~~k----~~v~ev~~g~ecgi~~~~~~~~~~~gd~ie 534 (537)
T 3izy_P 502 HHK----DDTSVVKTGMDCGLSLDEEKIEFKVGDAII 534 (537)
T ss_dssp CSS----CCCSEEETTCEEEEESSSSCSSCSCCCEEE
T ss_pred ccC----cccceEcCCCEEEEEEcCcccCCCCCCEEE
Confidence 654 589999999999884 6 77899999984
No 415
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.99 E-value=0.26 Score=47.68 Aligned_cols=26 Identities=19% Similarity=0.141 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..+|+|+|.+|+||||+...|....+
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 35899999999999999999987643
No 416
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.98 E-value=0.28 Score=45.23 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=22.0
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..++.|.|++|+|||+|+.++...
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~ 66 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQR 66 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999876
No 417
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=88.94 E-value=0.21 Score=53.07 Aligned_cols=24 Identities=17% Similarity=0.292 Sum_probs=21.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
--.|+|+|+.|+|||||++.|+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 347999999999999999999875
No 418
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.93 E-value=0.2 Score=46.61 Aligned_cols=25 Identities=16% Similarity=0.066 Sum_probs=18.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..|+|.|.+|+||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987654
No 419
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=88.91 E-value=0.18 Score=53.28 Aligned_cols=25 Identities=24% Similarity=0.440 Sum_probs=22.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
...++|+|+.|+|||||++.|.+..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999998863
No 420
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=88.84 E-value=0.31 Score=46.37 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.7
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
...|+|+|.+|+||||+...|....+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35799999999999999999987654
No 421
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=88.82 E-value=0.11 Score=53.61 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
--.++|+|+.|+|||||++.|++.
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl 103 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRF 103 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTS
T ss_pred CCEEEEECCCCchHHHHHHHHHcC
Confidence 347999999999999999998765
No 422
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.78 E-value=0.26 Score=45.18 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.6
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+|+|.|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987655
No 423
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.61 E-value=0.24 Score=45.59 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+.|+|+|.+|+||||+...|....+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3699999999999999999987655
No 424
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=88.57 E-value=0.3 Score=46.58 Aligned_cols=24 Identities=17% Similarity=0.066 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...|+|.|.+|+||||+.+.|...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHH
Confidence 357999999999999999999865
No 425
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=88.57 E-value=0.2 Score=52.86 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+.
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999865
No 426
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.54 E-value=1.4 Score=45.44 Aligned_cols=24 Identities=25% Similarity=0.242 Sum_probs=21.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..++.|.|++|+|||||+..|.+.
T Consensus 36 ~~~~ll~Gp~G~GKTtl~~~la~~ 59 (354)
T 1sxj_E 36 LPHLLLYGPNGTGKKTRCMALLES 59 (354)
T ss_dssp CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 345999999999999999999884
No 427
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=88.54 E-value=0.13 Score=49.26 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-|+|.|.+|+|||||++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999999999876
No 428
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=88.49 E-value=0.2 Score=52.90 Aligned_cols=23 Identities=30% Similarity=0.225 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHCC
Confidence 36899999999999999999865
No 429
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=88.47 E-value=0.24 Score=46.35 Aligned_cols=25 Identities=24% Similarity=0.409 Sum_probs=22.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcCC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCGA 86 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g~ 86 (662)
+|+|+|.+|+||||+...|....|.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCC
Confidence 5999999999999999999876553
No 430
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=88.43 E-value=0.3 Score=48.42 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=22.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
..+|+|+|.+|+||||++..|....+
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999987644
No 431
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=88.38 E-value=0.28 Score=47.24 Aligned_cols=24 Identities=17% Similarity=0.302 Sum_probs=21.5
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 699999999999999999987644
No 432
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=88.38 E-value=0.83 Score=46.32 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
...++.|.|++|+|||+|+.++....
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999887663
No 433
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=88.35 E-value=0.21 Score=52.79 Aligned_cols=23 Identities=22% Similarity=0.299 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCchHHHHHHHHhcC
Confidence 36899999999999999999865
No 434
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=88.26 E-value=0.22 Score=53.06 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+-
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEEcCCCchHHHHHHHHHcC
Confidence 36899999999999999999865
No 435
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=88.21 E-value=0.2 Score=55.63 Aligned_cols=23 Identities=22% Similarity=0.336 Sum_probs=21.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.+++|+|+.|||||||+++|+..
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~ 283 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMF 283 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 47999999999999999999876
No 436
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.17 E-value=0.3 Score=45.70 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.|+|.|.+|+||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEY 23 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999875
No 437
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=88.16 E-value=0.31 Score=49.68 Aligned_cols=25 Identities=16% Similarity=0.210 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
...|.|+|.+|+|||||+..|....
T Consensus 33 ~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 438
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=88.14 E-value=0.22 Score=52.91 Aligned_cols=23 Identities=17% Similarity=0.193 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+-
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCcHHHHHHHHHHcC
Confidence 36899999999999999999865
No 439
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=88.14 E-value=0.22 Score=52.84 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+-
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCChHHHHHHHHHcC
Confidence 47899999999999999999865
No 440
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=88.10 E-value=0.28 Score=48.93 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.|+|+|.+|+|||||...|....+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999988765
No 441
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=87.93 E-value=0.4 Score=48.50 Aligned_cols=24 Identities=21% Similarity=0.228 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
+.++++|++|+|||||++++....
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHc
Confidence 459999999999999999998873
No 442
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=87.90 E-value=0.29 Score=46.07 Aligned_cols=22 Identities=18% Similarity=0.143 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-|+|.|.+|+||||+++.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999876
No 443
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=87.87 E-value=0.35 Score=47.33 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..+|+|+|.+|+||||+...|....
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 444
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=87.85 E-value=0.28 Score=49.10 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=22.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.+|+|+|.+|+||||+...|....|
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4799999999999999999987655
No 445
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=87.74 E-value=0.87 Score=44.78 Aligned_cols=23 Identities=26% Similarity=0.059 Sum_probs=19.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.||.+.|.+|+||||++-++...
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~ 29 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHA 29 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHHHHHH
Confidence 58999999999999997776654
No 446
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=87.66 E-value=0.32 Score=48.10 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=21.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
+.++|+|++|+|||||+.++...
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46999999999999999999876
No 447
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=87.61 E-value=0.32 Score=44.46 Aligned_cols=23 Identities=26% Similarity=0.382 Sum_probs=20.2
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
-.+|+|+.|+|||||+++|....
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999998654
No 448
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=87.39 E-value=0.34 Score=45.09 Aligned_cols=24 Identities=25% Similarity=0.048 Sum_probs=21.1
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..|+|+|.+|+||||+.+.|...
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998765
No 449
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=87.31 E-value=0.31 Score=52.59 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
-.|+|+|+.|+|||||++.|+...
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHhhc
Confidence 369999999999999999999863
No 450
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=87.27 E-value=0.28 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+.
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCChHHHHHHHHhCC
Confidence 47999999999999999999764
No 451
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=87.22 E-value=0.35 Score=46.56 Aligned_cols=23 Identities=17% Similarity=0.203 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..++|+|++|+|||||+..|+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 37899999999999999999865
No 452
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=87.18 E-value=0.4 Score=46.23 Aligned_cols=22 Identities=23% Similarity=0.327 Sum_probs=20.3
Q ss_pred cEEEEEeCCCCCHHHHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLR 82 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (662)
..|+|.|.+||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999876
No 453
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=86.95 E-value=0.2 Score=52.80 Aligned_cols=23 Identities=13% Similarity=0.264 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+.
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTS
T ss_pred CEEEEECCCCccHHHHHHHHHcC
Confidence 36899999999999999999865
No 454
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=86.91 E-value=0.37 Score=50.77 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..+.|.|++|+|||||+..++..
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999999876
No 455
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.75 E-value=0.34 Score=44.62 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.+++.|.|++|+|||||+.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~ 66 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIK 66 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHH
Confidence 568999999999999999999876
No 456
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=86.63 E-value=0.3 Score=53.11 Aligned_cols=24 Identities=21% Similarity=0.206 Sum_probs=20.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
--+.|.|.+|+|||||+-.++...
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCChHHHHHHHHHHH
Confidence 468999999999999998887653
No 457
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=86.42 E-value=0.42 Score=46.51 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.3
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+|+|+|.+|+||||+...|....+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987644
No 458
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=86.36 E-value=1.8 Score=44.56 Aligned_cols=26 Identities=15% Similarity=0.268 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..+.|.+.|++|+|||+|+.++....
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 35789999999999999999999873
No 459
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=86.30 E-value=2.4 Score=43.89 Aligned_cols=22 Identities=5% Similarity=-0.049 Sum_probs=19.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHh
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.+.|.|++|+|||||+-+++..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 3799999999999998887755
No 460
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=86.26 E-value=0.42 Score=48.08 Aligned_cols=24 Identities=21% Similarity=0.308 Sum_probs=21.6
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
+.|+|+|++|+|||||+.++....
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCcChHHHHHHHHHHHc
Confidence 469999999999999999998873
No 461
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=86.19 E-value=0.47 Score=45.88 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.+|+|+|.+|+||||+...|....+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987644
No 462
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=86.15 E-value=0.32 Score=51.17 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..+.|.|++|+|||||+-.++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999988865
No 463
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.11 E-value=0.46 Score=46.98 Aligned_cols=26 Identities=31% Similarity=0.290 Sum_probs=22.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
...|+|.|++|+|||||...|....|
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35899999999999999999987654
No 464
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.07 E-value=0.42 Score=49.68 Aligned_cols=24 Identities=25% Similarity=0.246 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+++|+|++|+|||||+..+.+..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 479999999999999999999874
No 465
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=86.02 E-value=0.51 Score=46.27 Aligned_cols=27 Identities=19% Similarity=0.351 Sum_probs=23.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
+...|+|+|.+|+||||+...|....|
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999987655
No 466
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=85.98 E-value=0.47 Score=48.14 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHH
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLR 82 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~ 82 (662)
+...|+|.|.+||||||+.+.|..
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 467
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.91 E-value=0.47 Score=45.00 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=21.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
+++.|.|++|+|||+|+.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998763
No 468
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=85.86 E-value=0.53 Score=46.61 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.3
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+.|.|.|++|+|||||+.++....
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHc
Confidence 4579999999999999999998763
No 469
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=85.81 E-value=0.5 Score=45.20 Aligned_cols=28 Identities=21% Similarity=0.342 Sum_probs=23.9
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.....|+|+|.+||||||+.+.|....|
T Consensus 10 ~~~~iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 10 HHHMVIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3467899999999999999999987644
No 470
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=85.80 E-value=0.19 Score=52.93 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|||||||++.|.+.
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 36899999999999999999865
No 471
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=85.80 E-value=0.4 Score=52.43 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..++|+|+.|+|||||++.|++.
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhCc
Confidence 46999999999999999999875
No 472
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=85.79 E-value=1.3 Score=44.01 Aligned_cols=24 Identities=25% Similarity=0.339 Sum_probs=21.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+|.|.|.+|+|||+|+.++....
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~ 53 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLS 53 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhc
Confidence 579999999999999999998764
No 473
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.68 E-value=0.52 Score=45.29 Aligned_cols=24 Identities=25% Similarity=0.152 Sum_probs=21.2
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...|+|+|.+|+||||++..|...
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~ 48 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQ 48 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 357999999999999999998765
No 474
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.65 E-value=0.44 Score=48.38 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.7
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.-++|+|++|+|||||+..|+..
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 36899999999999999998875
No 475
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.65 E-value=0.41 Score=50.63 Aligned_cols=23 Identities=17% Similarity=0.159 Sum_probs=20.1
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhc
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
-++|+|+.|+|||||++++.+..
T Consensus 25 ~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998664
No 476
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=85.60 E-value=0.47 Score=49.80 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~ 94 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNG 94 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47999999999999999999987
No 477
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=85.45 E-value=0.32 Score=53.68 Aligned_cols=24 Identities=13% Similarity=0.026 Sum_probs=20.9
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.-+.|.|.+|+|||||+-.++...
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHH
T ss_pred eEEEEeecCCCCchHHHHHHHHHH
Confidence 468999999999999999988764
No 478
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=85.27 E-value=0.43 Score=52.42 Aligned_cols=24 Identities=17% Similarity=0.138 Sum_probs=21.5
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
-.++|+|+.|+|||||++.|....
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 479999999999999999998754
No 479
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=85.25 E-value=0.46 Score=45.43 Aligned_cols=22 Identities=27% Similarity=0.048 Sum_probs=20.2
Q ss_pred cEEEEEeCCCCCHHHHHHHHHH
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLR 82 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~ 82 (662)
..++|+|++|+|||||+..|+.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999986
No 480
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=85.18 E-value=2.7 Score=43.31 Aligned_cols=24 Identities=21% Similarity=0.214 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..+.|.|++|+|||||+..++..
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHhHHHHHHHHH
Confidence 357999999999999999999876
No 481
>3lh2_S 4E10_1VI7A_S0_002_N (T88); epitope-scaffold, immune system; 2.65A {Artificial gene}
Probab=85.11 E-value=0.55 Score=37.68 Aligned_cols=56 Identities=11% Similarity=0.087 Sum_probs=47.6
Q ss_pred EEEEE----chhHHHHhhccceEEEeecccc-CCEEEEEEEeccccccchhhhccccceeeEEe
Q 006068 464 VTIEL----LSLCIWYLSSLRFCFRLTRNMW-GWLWKLSLTGKLRGLVGYRSVFSSDTRGTGFM 522 (662)
Q Consensus 464 ~~i~v----~g~v~~~l~~Rrg~i~~~~~~~-~~~~~i~~~vP~~~l~g~~~~l~s~T~G~g~~ 522 (662)
..+.+ .|.|...|.+..+.+ .+.+ +..+.++..+|....-.|...|..+|+|+..+
T Consensus 10 ~~l~~dY~~~g~v~~~L~~~~~~I---~~~~Y~~~V~l~v~vp~~~~~~~~~~L~d~t~G~~~~ 70 (76)
T 3lh2_S 10 YTLQANWFDITGILWLLGQVDGKI---INSDVQAFVLLRVALPAAKVAEFSAKLADFSGGSLQL 70 (76)
T ss_dssp EEEEECHHHHHHHHHHHHHTTCEE---EEEEEEEEEEEEEEECC-CC-CHHHHHHHHHTTCCCB
T ss_pred EEEEEcccCHHHHHHHHHHCCCEE---EcccccCeEEEEEEECHHHHHHHHHHHHHHhCCEEEE
Confidence 34555 999999999999999 8877 77799999999999999999999999998755
No 482
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=85.01 E-value=0.53 Score=44.60 Aligned_cols=24 Identities=21% Similarity=0.302 Sum_probs=21.9
Q ss_pred EEEEEeCCCCCHHHHHHHHHHhcC
Q 006068 62 NVAVIAHVDHGKTTLMDRLLRQCG 85 (662)
Q Consensus 62 nIaIiGh~~~GKTTLv~~Ll~~~g 85 (662)
.|+|.|.+|+||||+...|....|
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988655
No 483
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.56 E-value=1.5 Score=46.35 Aligned_cols=24 Identities=29% Similarity=0.234 Sum_probs=20.9
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..+.|.|.+|+|||||+-.++..
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 346899999999999999998865
No 484
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=84.50 E-value=0.72 Score=45.22 Aligned_cols=26 Identities=15% Similarity=0.195 Sum_probs=22.8
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
+-..|+|.|.+|+||||+++.|....
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l 50 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRL 50 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998764
No 485
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=84.40 E-value=0.56 Score=50.87 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=21.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|.+.
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~ 180 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARY 180 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999987
No 486
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.37 E-value=0.53 Score=45.74 Aligned_cols=23 Identities=17% Similarity=0.222 Sum_probs=21.1
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
..++|+|++|+|||||+..|+..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 47899999999999999999975
No 487
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=84.10 E-value=2 Score=46.58 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=22.6
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..++.|.|++|+|||||+..+....
T Consensus 50 ~~~vLL~GppGtGKTtlAr~ia~~~ 74 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAEVIARYA 74 (447)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999999999998874
No 488
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=84.01 E-value=0.95 Score=40.62 Aligned_cols=23 Identities=9% Similarity=0.033 Sum_probs=20.4
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.+|.|.|.+|+|||+|+.++...
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCT
T ss_pred CcEEEECCCCccHHHHHHHHHHh
Confidence 57999999999999999988654
No 489
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=83.94 E-value=1.9 Score=41.82 Aligned_cols=23 Identities=26% Similarity=0.166 Sum_probs=20.8
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
.-|+|.|..|+||||+++.|...
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~ 29 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAER 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 47999999999999999999765
No 490
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=83.94 E-value=1.5 Score=55.89 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=23.2
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
+-++|.|.|++|+|||+|+-++...+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999998764
No 491
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=83.92 E-value=0.7 Score=49.09 Aligned_cols=24 Identities=38% Similarity=0.368 Sum_probs=21.8
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..++|+|++|+|||||+..|...
T Consensus 169 ~~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 169 KRYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 458999999999999999999875
No 492
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=83.91 E-value=1.9 Score=50.77 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=22.4
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
...++.++|++|+|||||+..|...
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~ 214 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQR 214 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHH
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999876
No 493
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=83.64 E-value=0.5 Score=53.16 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
--.++|+|+.|+|||||++.|++.
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999875
No 494
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=83.63 E-value=0.47 Score=53.42 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.0
Q ss_pred cEEEEEeCCCCCHHHHHHHHHHh
Q 006068 61 RNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 61 rnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-.++|+|+.|+|||||++.|++.
T Consensus 370 ~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhhc
Confidence 47999999999999999999765
No 495
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=83.59 E-value=1.6 Score=41.26 Aligned_cols=40 Identities=10% Similarity=-0.060 Sum_probs=25.3
Q ss_pred ceEEEEeeCCCCchhhHHHHHHHHHHcCCCcEEEeccCCC
Q 006068 144 EGAILVVDAGEGPLAQTKFVLAKALKYGLRPILLLNKVDR 183 (662)
Q Consensus 144 D~aIlVVDa~~G~~~qt~~~l~~~~~~~lp~IvviNKiD~ 183 (662)
+.-++++|=..-..+.-...+..+...++++++.....|-
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~~~~Vi~~Gl~~~f 115 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDRGIDVFCAGLDLTH 115 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHTTCEEEEEEESBCT
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHCCCCEEEEeecccc
Confidence 4568888944433233444555455569998888887773
No 496
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=83.39 E-value=4.8 Score=41.80 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
-..+.|.|++|+|||||+..|+..
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999999999876
No 497
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.31 E-value=1.1 Score=45.56 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=23.3
Q ss_pred CCccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 58 GRLRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 58 ~~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
...+.+.+.|++|+|||+|+.++....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345688888999999999999999874
No 498
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=83.03 E-value=0.82 Score=45.81 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=22.5
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
.+++.|.|++|+|||+|+.++....
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4689999999999999999998773
No 499
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=83.01 E-value=0.81 Score=45.03 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=23.0
Q ss_pred CccEEEEEeCCCCCHHHHHHHHHHhc
Q 006068 59 RLRNVAVIAHVDHGKTTLMDRLLRQC 84 (662)
Q Consensus 59 ~irnIaIiGh~~~GKTTLv~~Ll~~~ 84 (662)
..+.|.|.|++|+|||+|+.++....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999998763
No 500
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=83.01 E-value=0.58 Score=52.19 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.4
Q ss_pred ccEEEEEeCCCCCHHHHHHHHHHh
Q 006068 60 LRNVAVIAHVDHGKTTLMDRLLRQ 83 (662)
Q Consensus 60 irnIaIiGh~~~GKTTLv~~Ll~~ 83 (662)
--.++|+|+.|+|||||++.|.+.
T Consensus 47 Ge~~~LvG~NGaGKSTLlk~l~Gl 70 (538)
T 1yqt_A 47 GMVVGIVGPNGTGKSTAVKILAGQ 70 (538)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999875
Done!