BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 006069
(662 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N9V|A Chain A, Crystal Structure Of Inpp5b
pdb|3N9V|B Chain B, Crystal Structure Of Inpp5b
Length = 313
Score = 178 bits (452), Expect = 8e-45, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 153/269 (56%), Gaps = 19/269 (7%)
Query: 356 FSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVG 415
F +TPKE+ A+ + KY ++ ++VGI + ++V++ +I+ ++ VG G
Sbjct: 53 FHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTG 112
Query: 416 LMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDT 475
+MG MGNKG V++ + +C+V SHL + ++ +RRN D +I R +F +
Sbjct: 113 IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPS 170
Query: 476 DQPQTIPSHDQIFWFGDLNYRLNMMDTE-VRELVAQKRWDKLINSDQMIYQNCLSFHLSK 534
P TI +HD I W GDLNYR+ +D E V++L+ +K + L DQ+ Q
Sbjct: 171 LPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQLKIQ--------- 221
Query: 535 ELHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQ 594
+ + VFEG+ EG + F PTYKY+ SD + EK R+PAWCDRILW GK I Q
Sbjct: 222 -VAAKTVFEGFTEGELTFQPTYKYDTGSDDW-----DTSEKCRAPAWCDRILWKGKNITQ 275
Query: 595 LAY-TRAEILLSDHRPVSSTFLVQVEVLD 622
L+Y + + SDH+PVSS F + V V++
Sbjct: 276 LSYQSHMALKTSDHKPVSSVFDIGVRVVN 304
>pdb|3MTC|A Chain A, Crystal Structure Of Inpp5b In Complex With
Phosphatidylinositol 4- Phosphate
Length = 313
Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 100/268 (37%), Positives = 152/268 (56%), Gaps = 19/268 (7%)
Query: 356 FSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVG 415
F +TPKE+ A+ + KY ++ ++VGI + ++V++ +I+ ++ VG G
Sbjct: 56 FHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTG 115
Query: 416 LMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDT 475
+MG MGNKG V++ + +C+V SHL + ++ +RRN D +I R +F +
Sbjct: 116 IMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIEE--YERRNQDYKDICSRMQFCQPDPS 173
Query: 476 DQPQTIPSHDQIFWFGDLNYRLNMMDTE-VRELVAQKRWDKLINSDQMIYQNCLSFHLSK 534
P TI +HD I W GDLNYR+ +D E V++L+ +K + L DQ L
Sbjct: 174 LPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQ----------LKI 223
Query: 535 ELHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQ 594
++ + VFEG+ EG + F PTYKY+ SD + EK R+PAWCDRILW GK I Q
Sbjct: 224 QVAAKTVFEGFTEGELTFQPTYKYDTGSDDW-----DTSEKCRAPAWCDRILWKGKNITQ 278
Query: 595 LAY-TRAEILLSDHRPVSSTFLVQVEVL 621
L+Y + + SDH+PVSS F + V V+
Sbjct: 279 LSYQSHMALKTSDHKPVSSVFDIGVRVV 306
>pdb|1I9Y|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin
pdb|1I9Z|A Chain A, Crystal Structure Of Inositol Polyphosphate 5-Phosphatase
Domain (Ipp5c) Of Spsynaptojanin In Complex With
Inositol (1,4)-Bisphosphate And Calcium Ion
Length = 347
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 131/253 (51%), Gaps = 24/253 (9%)
Query: 375 SRPKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQ 434
S P YV++ S Q+VG + I+ ++ I N++ + GL G GNKG+V++
Sbjct: 98 SGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYED 157
Query: 435 SRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494
+ LC + SHL +G + E R+ D I RF + ++I +HD + WFGD N
Sbjct: 158 TGLCFITSHLAAGYTNYDE--RDHDYRTIASGLRFR------RGRSIFNHDYVVWFGDFN 209
Query: 495 YRLNMMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKELHSGHVFEGWKEGVINFPP 554
YR+++ EV +AQ + L DQ L+K++ +G VF + E I FPP
Sbjct: 210 YRISLTYEEVVPCIAQGKLSYLFEYDQ----------LNKQMLTGKVFPFFSELPITFPP 259
Query: 555 TYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTF 614
TYK++I +D Y +K R PAW DRIL+ G+ + +Y + SDHRP+ +T+
Sbjct: 260 TYKFDIGTDIY-----DTSDKHRVPAWTDRILYRGELVPH-SYQSVPLYYSDHRPIYATY 313
Query: 615 LVQVEVLDHRKLK 627
+ +D K K
Sbjct: 314 EANIVKVDREKKK 326
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 44/74 (59%), Gaps = 5/74 (6%)
Query: 103 KDVRVTIGTWNVAGRQPYEDLDIDDWLCTQEP--ADIYIFGFQEVVPLNAGNVLGAESSR 160
K+V++ + ++N+ G L+ +WL + ADIY+ GFQE+V L V+ A+ ++
Sbjct: 23 KNVKIFVASYNLNGCSATTKLE--NWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAK 80
Query: 161 PIPKWEAIIRRTLN 174
+WE+ ++R LN
Sbjct: 81 R-REWESCVKRLLN 93
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 113 bits (283), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 120/250 (48%), Gaps = 27/250 (10%)
Query: 379 YVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLC 438
Y I + + I V++ V+ I+++ S V G+ +GNKG+V VS +
Sbjct: 81 YRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFG 140
Query: 439 LVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFS----SVFDTDQPQTIPSHDQIFWFGDLN 494
V HLTSG + A RRN + +I R + FD T +FWFGDLN
Sbjct: 141 FVNCHLTSGNEKTA--RRNQNYLDILRLLSLGDRQLNAFDISLRFT-----HLFWFGDLN 193
Query: 495 YRLNMMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKELHSGHVFEGWKEGVINFPP 554
YRL+M E+ +++K ++ L+ DQ+ +L +E H VF + E I+FPP
Sbjct: 194 YRLDMDIQEILNYISRKEFEPLLRVDQL--------NLEREKHK--VFLRFSEEEISFPP 243
Query: 555 TYKYEINS-DRYVGENPK-EGEKKRSPAWCDRILWLGKGIKQLAYTRA----EILLSDHR 608
TY+YE S D Y K G + P+WCDRILW + +I+ SDH
Sbjct: 244 TYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHS 303
Query: 609 PVSSTFLVQV 618
PV TF V V
Sbjct: 304 PVFGTFEVGV 313
>pdb|2XSW|A Chain A, Crystal Structure Of Human Inpp5e
pdb|2XSW|B Chain B, Crystal Structure Of Human Inpp5e
Length = 357
Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 78/259 (30%), Positives = 127/259 (49%), Gaps = 38/259 (14%)
Query: 377 PKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSR 436
P YV + S +Y+S+++R+ L + ++ S V ++ + KG++ +S T F +
Sbjct: 85 PHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTS 144
Query: 437 LCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIP----------SHDQ 486
+ SH TSG DG R D + RT + V + P T P D+
Sbjct: 145 FLFITSHFTSG--DGKVAERLLDYT----RTVQALVLPRNVPDTNPYRSSAADVTTRFDE 198
Query: 487 IFWFGDLNYRLNMMDTEVRELVAQK---RWDKLINSDQMIYQNCLSFHLSKELHSGHVFE 543
+FWFGD N+RL+ T V L+ Q L+ DQ+I +E+ G +F+
Sbjct: 199 VFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQLI----------REMRKGSIFK 248
Query: 544 GWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGK---GIKQLAYTRA 600
G++E I+F P+YK++I D Y K+R+P++ DR+L+ + I ++Y+
Sbjct: 249 GFQEPDIHFLPSYKFDIGKDTY-----DSTSKQRTPSYTDRVLYRSRHKGDICPVSYSSC 303
Query: 601 E-ILLSDHRPVSSTFLVQV 618
I SDHRPV F V+V
Sbjct: 304 PGIKTSDHRPVYGLFRVKV 322
>pdb|1NTF|A Chain A, Crystal Structure Of Cimex Nitrophorin
pdb|1Y21|A Chain A, Crystal Structure Of Cimex Nitrophorin No Complex
pdb|1SI6|X Chain X, Crystal Structure Of Cimex Nitrophorin Complex With Co
pdb|1YJH|A Chain A, Crystal Structure Of Cimex Nitrophorin Ferrous No Complex
pdb|2IMQ|X Chain X, Crystal Structure Of Ferrous Cimex Nitrophorin
Length = 282
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 36/199 (18%)
Query: 424 GSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPS 483
G + S T++ R S ++ + DV+ + + + D + + PS
Sbjct: 116 GGIVTSFTIYNKRFSFTTSRMS-----------DEDVTSTNTKYAYDTRLDYSK-KDDPS 163
Query: 484 HDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKELHSGHVFE 543
D +FW GDLN R+ T + LV Q D L+ DQ+ K+ +F+
Sbjct: 164 -DFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQL-----------KKAKEQKLFD 211
Query: 544 GWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILW---LGKGIKQLAY-TR 599
GW E + F PTYK++ N+D Y + +P+W DR L+ GK I+ L+Y +
Sbjct: 212 GWTEPQVTFKPTYKFKPNTDEY--------DLSATPSWTDRALYKSGTGKTIQPLSYNSL 263
Query: 600 AEILLSDHRPVSSTFLVQV 618
++HRPV + F V +
Sbjct: 264 TNYKQTEHRPVLAKFRVTL 282
>pdb|3N2T|A Chain A, Structure Of The Glycerol Dehydrogenase Akr11b4 From
Gluconobacter Oxydans
Length = 348
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 10/77 (12%)
Query: 80 SKGYHLRHRRGKSETLRVQYINTKDVRVTIGTWNVAG---RQPYED-------LDIDDWL 129
S G R S+T+R+ I+T RV +GTW + G P +D +D+ +
Sbjct: 7 SSGLVPRGSHMASDTIRIPGIDTPLSRVALGTWAIGGWMWGGPDDDNGVRTIHAALDEGI 66
Query: 130 CTQEPADIYIFGFQEVV 146
+ A +Y FG E +
Sbjct: 67 NLIDTAPVYGFGHSEEI 83
>pdb|2WQM|A Chain A, Structure Of Apo Human Nek7
pdb|2WQN|A Chain A, Structure Of Adp-Bound Human Nek7
Length = 310
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 270 ATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGLKRSHHSYGNLV 325
AT V +L L R FSS +LV P +SP+ NG K S G L+
Sbjct: 171 ATGVVKLGDLGLGRFFSSKTTAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLL 226
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 30.0 bits (66), Expect = 4.1, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 133 EPADIYIFGFQEVVPLNAGNVLGAESSRPIPKWEAIIRRTLNKSAEPENKY 183
+P+ I + P+ GN L E +R P+++ + + KS N Y
Sbjct: 32 QPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQANAY 82
>pdb|3L2D|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2D|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp.
pdb|3L2E|B Chain B, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2E|D Chain D, Glycocyamine Kinase, Alpha-Beta Heterodimer From Marine
Worm Namalycastis Sp.
pdb|3L2F|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2F|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 1.
pdb|3L2G|A Chain A, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|B Chain B, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|C Chain C, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|D Chain D, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|E Chain E, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|F Chain F, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|G Chain G, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|H Chain H, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|I Chain I, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|J Chain J, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|K Chain K, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|L Chain L, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|M Chain M, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|N Chain N, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|O Chain O, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|P Chain P, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|Q Chain Q, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2.
pdb|3L2G|R Chain R, Glycocyamine Kinase, Beta-Beta Homodimer From Marine Worm
Namalycastis Sp., With Transition State Analog
Mg(Ii)-Adp-No3-Glycocyamine. Part 2
Length = 390
Score = 29.3 bits (64), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 490 FGDLNYRLNMMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKELHSGHVFEGWKEGV 549
F DL+ N+M +++ + + +K WDK + + + + C+ + + G+ F G K G
Sbjct: 31 FPDLSKHNNVMASQLTKELYEKYWDK-VTPNGVTFDKCIQTGVD---NPGNKFYGKKTGC 86
Query: 550 INFPPTYKYEI 560
+ F Y YE
Sbjct: 87 V-FGDEYSYEC 96
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,178,035
Number of Sequences: 62578
Number of extensions: 714533
Number of successful extensions: 1390
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1359
Number of HSP's gapped (non-prelim): 14
length of query: 662
length of database: 14,973,337
effective HSP length: 105
effective length of query: 557
effective length of database: 8,402,647
effective search space: 4680274379
effective search space used: 4680274379
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)