Query 006069
Match_columns 662
No_of_seqs 382 out of 1183
Neff 4.8
Searched_HMMs 46136
Date Thu Mar 28 17:54:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006069.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006069hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03191 Type I inositol-1,4,5 100.0 1E-159 3E-164 1313.3 45.7 609 1-643 1-621 (621)
2 KOG0566 Inositol-1,4,5-triphos 100.0 8E-91 1.7E-95 782.8 25.1 325 77-629 513-844 (1080)
3 smart00128 IPPc Inositol polyp 100.0 1.4E-76 3E-81 622.1 27.8 225 377-622 80-310 (310)
4 COG5411 Phosphatidylinositol 5 100.0 2.4E-65 5.2E-70 545.2 18.8 322 78-626 7-336 (460)
5 PTZ00312 inositol-1,4,5-tripho 100.0 9.7E-31 2.1E-35 268.9 10.5 175 420-614 65-356 (356)
6 KOG0565 Inositol polyphosphate 100.0 7.9E-29 1.7E-33 233.4 12.7 142 378-520 2-145 (145)
7 KOG1976 Inositol polyphosphate 99.8 2.8E-19 6.1E-24 184.9 4.9 178 420-616 154-388 (391)
8 TIGR03395 sphingomy sphingomye 98.1 4.7E-05 1E-09 80.2 15.3 71 419-498 117-191 (283)
9 PRK05421 hypothetical protein; 98.0 5.4E-05 1.2E-09 78.5 13.0 58 423-495 135-193 (263)
10 PF03372 Exo_endo_phos: Endonu 98.0 1.7E-05 3.8E-10 76.1 7.6 98 388-501 72-173 (249)
11 COG3568 ElsH Metal-dependent h 97.1 0.0042 9.1E-08 65.2 11.1 55 423-494 119-174 (259)
12 TIGR00633 xth exodeoxyribonucl 96.7 0.01 2.2E-07 59.8 10.3 34 108-145 2-36 (255)
13 PRK11756 exonuclease III; Prov 96.5 0.014 3.1E-07 60.1 10.0 66 422-497 88-156 (268)
14 PTZ00297 pantothenate kinase; 96.1 0.047 1E-06 69.3 13.3 69 421-495 131-206 (1452)
15 PRK13911 exodeoxyribonuclease 95.0 0.2 4.3E-06 52.2 11.1 35 108-145 2-36 (250)
16 TIGR00195 exoDNase_III exodeox 93.9 0.26 5.6E-06 50.4 8.8 34 108-145 2-35 (254)
17 COG3021 Uncharacterized protei 92.8 0.33 7.2E-06 52.4 7.7 60 421-495 173-233 (309)
18 PRK13911 exodeoxyribonuclease 92.3 0.054 1.2E-06 56.4 1.0 56 425-496 89-148 (250)
19 PLN03144 Carbon catabolite rep 90.9 1.7 3.7E-05 51.1 11.3 63 436-512 418-480 (606)
20 KOG3873 Sphingomyelinase famil 88.0 3.6 7.7E-05 45.6 10.2 107 382-501 73-188 (422)
21 PF14529 Exo_endo_phos_2: Endo 87.3 0.28 6E-06 43.5 1.2 33 579-611 86-119 (119)
22 COG0708 XthA Exonuclease III [ 87.2 0.1 2.2E-06 55.1 -1.8 34 108-145 2-35 (261)
23 KOG2756 Predicted Mg2+-depende 83.8 3.3 7.2E-05 44.3 7.2 62 427-498 196-257 (349)
24 PRK11756 exonuclease III; Prov 77.2 0.61 1.3E-05 48.1 -0.7 34 108-145 2-35 (268)
25 KOG2338 Transcriptional effect 73.8 4.5 9.7E-05 46.3 4.9 96 392-497 204-305 (495)
26 smart00476 DNaseIc deoxyribonu 73.7 14 0.00029 39.6 8.3 105 375-497 76-189 (276)
27 TIGR00633 xth exodeoxyribonucl 68.3 1.9 4.2E-05 43.4 0.5 54 435-498 100-155 (255)
28 TIGR00195 exoDNase_III exodeox 65.0 2.1 4.6E-05 43.7 0.0 53 436-498 98-152 (254)
29 PRK15251 cytolethal distending 62.2 6.1 0.00013 42.2 2.8 54 422-494 141-194 (271)
30 PRK05421 hypothetical protein; 51.1 8.3 0.00018 40.2 1.6 33 583-617 230-262 (263)
31 PRK15251 cytolethal distending 40.3 53 0.0011 35.3 5.6 38 107-149 25-69 (271)
32 TIGR02616 tnaC_leader tryptoph 27.7 14 0.00029 26.3 -0.8 16 17-32 6-21 (26)
33 PF08053 Tna_leader: Tryptopha 25.5 14 0.00031 25.1 -1.0 14 17-30 8-21 (24)
34 KOG3870 Uncharacterized conser 22.8 34 0.00074 38.6 0.6 16 482-497 350-365 (434)
35 PRK09806 tryptophanase leader 22.0 17 0.00037 25.1 -1.1 15 17-31 8-22 (26)
No 1
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=100.00 E-value=1.5e-159 Score=1313.32 Aligned_cols=609 Identities=76% Similarity=1.202 Sum_probs=560.7
Q ss_pred CCcccCCCccccChHHHHHhhhccCCCCccccCCccCCCCCcccccccccccccccccccccccccccccccccccCCC-
Q 006069 1 MRTQRGKRSEAFWPSIVMKKWLNIKPKVYDFSEDEIDTETESEDDACSVKDARVHIREDHLHKAQENHSDCQSQISETP- 79 (662)
Q Consensus 1 m~~~~~k~~~~~Wp~~v~~Kwlni~~~~~df~aD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (662)
||++++|++|+||||+||||||||++|++||||||.|+++++|+++|+.++.+..++|+|+.+.++++..++.++++.|
T Consensus 1 m~~~~~k~~~~~w~~~v~rkwlni~~k~~df~ad~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (621)
T PLN03191 1 MRTRRGKRPEAFWPSIVMKKWLNIKPKVYDFSEDEYDTETESEDDACSVKDVRVNVDEDHANRRQGNQSVFGNQISDGGV 80 (621)
T ss_pred CCccccCccccccHHHHHHHHhCcCCcccccCcccccCCCccccchhhhhcccccccccccccccccccccccccccCcc
Confidence 9999999999999999999999999999999999999988999999999999999999999999999999988877655
Q ss_pred --CchhhHhhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeeeeeCCCCCccccC
Q 006069 80 --SKGYHLRHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEVVPLNAGNVLGAE 157 (662)
Q Consensus 80 --~~~~~~~~rr~~~e~~r~~y~~~~~~rifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEiV~Lna~nvl~~e 157 (662)
.+.|..++|||++||+|+|||+++++|||||||||||+.|+.+++|.+||.+++|+|||||||||||||||||||+++
T Consensus 81 ~~~~~~~~~~rr~~~e~~ra~y~~~~~~rv~v~TWNV~g~~p~~~l~l~~wl~~~~p~DiyviG~QE~v~lna~nv~~~~ 160 (621)
T PLN03191 81 SVSKGYSSKHRRGKSETLRAQYINTKDIRVTIGTWNVAGRLPSEDLEIEDWLSTEEPADIYIIGFQEVVPLNAGNVLGAE 160 (621)
T ss_pred ccccccchhhhccchhhhHHHhccccceEEEEEEeecCCCCCcccCCHHHhccCCCCCCEEEEeeEEeccCcHhhhhccc
Confidence 678888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhHHHHHHHHHhcCCCCCCccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCCCcccc
Q 006069 158 SSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNVGREDL 237 (662)
Q Consensus 158 d~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (662)
++.|+.+|+.+|+++||+..++.++|+|||+||||++. +|+ ++|||+.|+|+.....++.+.......+
T Consensus 161 ~~~~~~~W~~~i~~tl~~~~~~~~~~k~~S~ppsp~~~-~~~---~~~e~~~~~d~~~~~~~~~~~~~~~~~~------- 229 (621)
T PLN03191 161 DSRPIPKWEAIIRRTLNKSNKPESKHKSYSAPPSPVLR-TSI---VADELAEEVDSLPLEMMNNEFIDAATGC------- 229 (621)
T ss_pred cCCchhhHHHHHHHHHhccCCCCCccccCCCCCCcccC-Ccc---hhhhhhhhcccChhhhcccccccccccc-------
Confidence 99999999999999999999999999999999999994 444 6789999988865543332211111110
Q ss_pred hhhhhcccccccccccccccCCCCCCCCCCCCCCchhhchhhhhhhhccccccccccccCCCCCCCcccccccCCCcccc
Q 006069 238 KKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGLKRS 317 (662)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~~~p~~~~~~~~~~~~~~~~~~ 317 (662)
-....+.+++++||+.++++..+.+.++++|+|+||+|+||||+|||+|++|++|+++.++.+++++
T Consensus 230 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~e~p~~~~~~~~~~~~~~~~~~ 296 (621)
T PLN03191 230 -------------PSLEPERNKNIGWPEHSLDATPQVVSSNSKLRRVFSSSARLGFKWPENPSLFSPQRFALNARGLKRS 296 (621)
T ss_pred -------------cccchhhccccCCcccccccCcccccccccceeeeccccccccCCCCCccccCchhhcccccccchh
Confidence 0122556678889999999988888899999999999999999999999999999999999999999
Q ss_pred ccccCccccchhhccCCc------ccccccccCCCCCCcccccccCCCchhhhchHHHHhhccCCCCEEEEEeeeceeEE
Q 006069 318 HHSYGNLVSTWMEQQEEP------EVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIY 391 (662)
Q Consensus 318 ~~s~~~~~~~~~~~~~~~------~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qmVGi~ 391 (662)
++||++++++|.++++.. .+..|.+...+.+++++++.+++++..|.++..+.........|++|.|+|||||+
T Consensus 297 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YvkV~S~qLvGl~ 376 (621)
T PLN03191 297 HRSFGNLGLSWNEIKQRSEVPEVPEVIDSLSDVSDRSSEAEDDTFKEVPSYQLPEDLIKDCRKVKQKYVRIVSKQMVGIY 376 (621)
T ss_pred hhccccccccccchhhcccccccccccccccccccccCCCcccccccCChhhhhhHHHHhhccCCCCEEEEEEEeeeeEE
Confidence 999999999999766643 33445556666677888899999999888888888888999999999999999999
Q ss_pred EEEEEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCC
Q 006069 392 VSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSS 471 (662)
Q Consensus 392 L~VfVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~ 471 (662)
|+||||++++++|++|++++|+||+||++||||||+|+|.|++|+|||||||||||++++++++||+|+.+|++++.|.+
T Consensus 377 L~VFvk~~l~~~Is~V~~s~V~tGl~G~~GNKGAVaIr~~l~~Ts~cFVn~HLAAg~~~~~~~rRN~D~~~I~~~l~F~~ 456 (621)
T PLN03191 377 VSVWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSISMSLFQSRLCFVCSHLTSGHKDGAEQRRNADVYEIIRRTRFSS 456 (621)
T ss_pred EEEEEehhhhhhcccceeeeEeeccccccccceeEEEEEEEcCcEEEEEEeccccccccchHHHHHHHHHHHHhccccCc
Confidence 99999999999999999999999999999999999999999999999999999999998889999999999999999987
Q ss_pred CCCCCCCCCCCCcceEEEeCccCccccCChHHHHHHHHhhhHHHHhhcChhhhhhccchhhHHHHhcCCCccCccccCcc
Q 006069 472 VFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKELHSGHVFEGWKEGVIN 551 (662)
Q Consensus 472 ~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQ~~~~~~l~~~L~~e~~~g~vF~gf~Eg~I~ 551 (662)
..+...|..|.+||+|||||||||||++++++++++|.+++|..||++|| |.+++++|++|.||+||+|+
T Consensus 457 ~~~~~~~~~I~dhD~vFWlGDLNYRIdl~~~ev~~lI~~~~~~~LL~~DQ----------L~~e~~~g~vF~GF~Eg~I~ 526 (621)
T PLN03191 457 VLDTDQPQTIPSHDQIFWFGDLNYRLNMLDTEVRKLVAQKRWDELINSDQ----------LIKELRSGHVFDGWKEGPIK 526 (621)
T ss_pred ccccCCCccccccceEEEecCccccccCCHHHHHHHHhhccHHHHHHHhH----------HHHHHHcCCccCCcccCCcc
Confidence 66666788999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred cCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecCceeEEeeccCCCCCCCCcCceeEEEEEEEeeCHHHHhhhcc
Q 006069 552 FPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKRALN 631 (662)
Q Consensus 552 FpPTYKy~~~Sd~Yd~~~~k~s~KkR~PSWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~V~vi~~~klq~~l~ 631 (662)
|||||||+.|++.|+++++++++|+|+|||||||||++++++++.|.+.++++||||||+|.|.++|++++++|+|++++
T Consensus 527 FpPTYKYd~gSd~Ydg~~~~Ts~KkR~PSWCDRILykg~~i~~l~Y~s~ei~~SDHRPV~A~F~v~V~~id~~k~q~~~~ 606 (621)
T PLN03191 527 FPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLCYKRSEIRLSDHRPVSSMFLVEVEVFDHRKLQRALN 606 (621)
T ss_pred CCCCcccccCCccccccccccccCccccchhheEeecCCCceEeEeccCCcccCCchhcceEEEEEEEecCHHHHHhhhh
Confidence 99999999999999998889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcc---ccCCccc
Q 006069 632 VSSAV---VHPDIFL 643 (662)
Q Consensus 632 ~~~~~---v~~~~~~ 643 (662)
+++|+ ||||.++
T Consensus 607 ~~~a~~~~~~~~~~~ 621 (621)
T PLN03191 607 VNSAAASAVHPEPSF 621 (621)
T ss_pred cchhhhhccCCccCC
Confidence 99999 9999864
No 2
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8e-91 Score=782.84 Aligned_cols=325 Identities=42% Similarity=0.771 Sum_probs=302.2
Q ss_pred CCCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC------CCCCEEEEeeeeeeeCC
Q 006069 77 ETPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQ------EPADIYIFGFQEVVPLN 149 (662)
Q Consensus 77 ~~~~~~~~~-~~rr~~~e~~r~~y~~~~~~rifvgTwNV~G~~p~~~ldl~~WL~~~------~~~DIYvlGfQEiV~Ln 149 (662)
-+|++.|+. +|+.|.+| |+..++||||||||||||+.+....||++||++. .++|||||||||||+||
T Consensus 513 ~dpv~~yv~~~L~er~~e-----yt~~k~i~IfvgTfNvNG~s~~~k~~L~~WLfp~s~~~~~~~aDIyviG~eEvVeLn 587 (1080)
T KOG0566|consen 513 YDPVHEYVLKELRERRSE-----YTEPKDISIFVGTFNVNGRSAAFKDDLSDWLFPISRGKEFSPADIYVIGFEEVVELN 587 (1080)
T ss_pred cCchhHHHHHHHHHhhhh-----hccccceEEEEEeeeccCccccchhhHHhhccccccCCcCCcCcEEEEeehhhhhcC
Confidence 378888887 78888665 9999999999999999997776667899999974 37999999999999999
Q ss_pred CCCccccCCCCChhHHHHHHHHHhcCCCCCCccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccC
Q 006069 150 AGNVLGAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNG 229 (662)
Q Consensus 150 a~nvl~~ed~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~ 229 (662)
||||+.++..+ ...|++.|+++||+.
T Consensus 588 ag~iv~As~tk-~~~Wee~i~~~Ln~~----------------------------------------------------- 613 (1080)
T KOG0566|consen 588 AGNIVSASTTK-RRFWEEKILKTLNRY----------------------------------------------------- 613 (1080)
T ss_pred ccceeccChHH-HHHHHHHHHHHhcCC-----------------------------------------------------
Confidence 99999886654 899999999998742
Q ss_pred CCCCcccchhhhhcccccccccccccccCCCCCCCCCCCCCCchhhchhhhhhhhccccccccccccCCCCCCCcccccc
Q 006069 230 CNVGREDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAI 309 (662)
Q Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~~~p~~~~~~~~~~ 309 (662)
T Consensus 614 -------------------------------------------------------------------------------- 613 (1080)
T KOG0566|consen 614 -------------------------------------------------------------------------------- 613 (1080)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccCccccchhhccCCcccccccccCCCCCCcccccccCCCchhhhchHHHHhhccCCCCEEEEEeeecee
Q 006069 310 NGNGLKRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVG 389 (662)
Q Consensus 310 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qmVG 389 (662)
..+|+++.|.||||
T Consensus 614 ------------------------------------------------------------------~~kYvlL~s~QlvG 627 (1080)
T KOG0566|consen 614 ------------------------------------------------------------------KNKYVLLRSEQLVG 627 (1080)
T ss_pred ------------------------------------------------------------------CCceEEEehhhhhe
Confidence 12789999999999
Q ss_pred EEEEEEEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhccc
Q 006069 390 IYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRF 469 (662)
Q Consensus 390 i~L~VfVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F 469 (662)
++|.+|+|.+..++|++|.+++++||++|..||||||+|||.++.|+|||||+|||||+.+ ..+||.||.+|.++++|
T Consensus 628 v~L~iF~r~~~~p~Ik~V~~~tkKTGfGG~tgNKGAVAIrf~~~~TsfCFv~SHlAAG~sn--v~ERn~DY~tI~r~l~F 705 (1080)
T KOG0566|consen 628 VCLLLFIRPDHAPYIKDVAGDTKKTGFGGATGNKGAVAIRFVYHATSFCFVCSHLAAGQSN--VEERNEDYKTIARKLRF 705 (1080)
T ss_pred eeEEEEEcccccchhhhcccceeecccccccCCCceEEEEEEeccccEEEEecccccccch--HhhhhhhHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999976 67899999999999999
Q ss_pred CCCCCCCCCCCCCCcceEEEeCccCccccCChHHHHHHHHhhhHHHHhhcChhhhhhccchhhHHHHhcCCCccCccccC
Q 006069 470 SSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKELHSGHVFEGWKEGV 549 (662)
Q Consensus 470 ~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQ~~~~~~l~~~L~~e~~~g~vF~gf~Eg~ 549 (662)
+. ...|.+||+|||||||||||+|++++|+.+|.+++|+.|+++|| |.++|.+|.+|.||.|++
T Consensus 706 p~------Gr~I~~HD~ifW~GDFNYRI~l~nEEVr~~v~~~d~~kL~e~DQ----------L~~q~~~G~vF~gF~E~~ 769 (1080)
T KOG0566|consen 706 PR------GRMIFSHDYIFWLGDFNYRIDLSNEEVRRLVRNQDLDKLLEYDQ----------LTQQMNAGQVFPGFHEGQ 769 (1080)
T ss_pred cC------CccccCCceEEEecccceeecCCHHHHHHHHHhccHHHHhhHHH----------HHHHHhcCcccccccccc
Confidence 75 35799999999999999999999999999999999999999999 999999999999999999
Q ss_pred cccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecCceeEEeeccCCCCCCCCcCceeEEEEEEEeeCHHHHhhh
Q 006069 550 INFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKRA 629 (662)
Q Consensus 550 I~FpPTYKy~~~Sd~Yd~~~~k~s~KkR~PSWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~V~vi~~~klq~~ 629 (662)
|+|+||||||.||+.||+ |+|+|+|||||||||++..+.+++|.+.++++||||||+|+|.++|..+|.+|..+.
T Consensus 770 ltF~PTYKyD~gTd~YDT-----SeK~R~PAWTDRIL~r~e~~~~l~Y~~~el~~SDHRPV~A~~~a~i~~Vd~~kk~~l 844 (1080)
T KOG0566|consen 770 LTFPPTYKYDPGTDDYDT-----SEKCRTPAWTDRILWRGEKLELLSYKRAELKTSDHRPVYAIFRAEIFEVDEQKKLRL 844 (1080)
T ss_pred cccCCcccccCCCCcccc-----chhccCccchhhheeccccccccccccccccccCCCceEEEEEEEEEEEcHHHHHHH
Confidence 999999999999999995 899999999999999999999999999999999999999999999999998876543
No 3
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=100.00 E-value=1.4e-76 Score=622.13 Aligned_cols=225 Identities=40% Similarity=0.738 Sum_probs=207.3
Q ss_pred CCEEEEEeeeceeEEEEEEEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHH
Q 006069 377 PKYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRR 456 (662)
Q Consensus 377 ~~Yv~v~S~qmVGi~L~VfVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rR 456 (662)
..|+++.+.+|+||+|+||+|.++.++|+++.++++++|++|.+||||||+|+|.+.+++||||||||+||+.+ .++|
T Consensus 80 ~~Y~~v~~~~l~gi~l~vf~~~~~~~~i~~v~~~~v~~G~~~~~~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~--~~~R 157 (310)
T smart00128 80 GQYNVLAKVRLVGILVLVFVKANHLVYIKDVETFTVKTGMGGLWGNKGAVAVRFKLSDTSFCFVNSHLAAGASN--VEQR 157 (310)
T ss_pred CceEEEeeeeecceEEEEEEehhhcCccceeEeeeeeccccceeecCceEEEEEEEcCcEEEEEeeccccccch--hhhh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999864 7899
Q ss_pred hhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccccCCh-HHHHHHHHhhhHHHHhhcChhhhhhccchhhHHH
Q 006069 457 NSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMD-TEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKE 535 (662)
Q Consensus 457 N~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~-~~v~~lI~~~~~~~LL~~DQ~~~~~~l~~~L~~e 535 (662)
|+|+.+|++++.|+... ...+.+||+|||||||||||++.+ ++++++|++++|..||++|| |+.+
T Consensus 158 ~~~~~~I~~~~~f~~~~----~~~~~~~d~~f~~GDlNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQ----------L~~~ 223 (310)
T smart00128 158 NQDYKTILRALSFPERA----ELSQFDHDVVFWFGDLNFRLDSPSYEEVRRKISKKEFDDLLEKDQ----------LNRQ 223 (310)
T ss_pred HHHHHHHHHhcCCCCCc----cccccccceEEEecCcceeecCCCHHHHHHHHhhCcHHHHhhhhh----------HHHH
Confidence 99999999999886421 112678999999999999999998 89999999999999999999 9999
Q ss_pred HhcCCCccCccccCcccCCCCCcc-cCCccCCCCCCCCCCcccCCCcccceeeec--CceeEEe-ecc-CCCCCCCCcCc
Q 006069 536 LHSGHVFEGWKEGVINFPPTYKYE-INSDRYVGENPKEGEKKRSPAWCDRILWLG--KGIKQLA-YTR-AEILLSDHRPV 610 (662)
Q Consensus 536 ~~~g~vF~gf~Eg~I~FpPTYKy~-~~Sd~Yd~~~~k~s~KkR~PSWCDRIL~~g--~~i~~l~-Y~s-~e~~~SDHrPV 610 (662)
++++.+|.||.|++|+|||||||+ .|++.|++ ++|+|+|||||||||+. .++.++. |.+ .++.+||||||
T Consensus 224 ~~~~~~f~~f~E~~I~F~PTYK~~~~~t~~Yd~-----~~k~R~PsWcDRIL~~~~~~~~~~~~~Y~s~~~~~~SDHkPV 298 (310)
T smart00128 224 KEAGKVFKGFQEGPITFPPTYKYDSVGTETYDT-----SEKKRVPAWCDRILYRSNGPNLIQLSEYHSGMELTTSDHKPV 298 (310)
T ss_pred hhcccccCcCccCCcCCCCCeeecCCCCccccC-----cccccCcchhheehhhccCCCceecccccCCCccCCcCcccc
Confidence 999999999999999999999999 99999985 67999999999999994 4566665 887 58999999999
Q ss_pred eeEEEEEEEeeC
Q 006069 611 SSTFLVQVEVLD 622 (662)
Q Consensus 611 ~A~F~v~V~vi~ 622 (662)
+|.|.|.+..++
T Consensus 299 ~~~f~v~~~~~~ 310 (310)
T smart00128 299 FATFRLKVTAVD 310 (310)
T ss_pred cEEEEEEEEecC
Confidence 999999998764
No 4
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=100.00 E-value=2.4e-65 Score=545.21 Aligned_cols=322 Identities=36% Similarity=0.624 Sum_probs=287.6
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCC----CCCCCEEEEeeeeeeeCCCCC
Q 006069 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCT----QEPADIYIFGFQEVVPLNAGN 152 (662)
Q Consensus 78 ~~~~~~~~-~~rr~~~e~~r~~y~~~~~~rifvgTwNV~G~~p~~~ldl~~WL~~----~~~~DIYvlGfQEiV~Lna~n 152 (662)
+|++.|+. .++.++++ |+-.+++.+|++|+|++|..| ..++..||++ .+.+|+||+||||+|+|++|.
T Consensus 7 ~p~~~y~~~~l~~~~sk-----~~~~~~~~~f~~~~n~~~~~~--k~~~k~~lfP~~~~~~~~dlyVvGlQEvv~lt~~s 79 (460)
T COG5411 7 DPRHPYIVAVLRQRRSK-----YVIEKDVSIFVSTFNPPGKPP--KASTKRWLFPEIEATELADLYVVGLQEVVELTPGS 79 (460)
T ss_pred CCCchhHHHHHHHHhhh-----heeecceeeEeccccCCCCCc--hhhhhhhcccccccccccceEEeccceeeeccchh
Confidence 68888887 67777554 999999999999999999776 4458999998 246899999999999999999
Q ss_pred ccccCCCCChhHHHHHHHHHhcCCCCCCccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCC
Q 006069 153 VLGAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNV 232 (662)
Q Consensus 153 vl~~ed~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~ 232 (662)
|+++........|++.+..+||. ..
T Consensus 80 ils~~p~~rl~~wes~~~~~Ln~-~~------------------------------------------------------ 104 (460)
T COG5411 80 ILSADPYDRLRIWESKVLDCLNG-AQ------------------------------------------------------ 104 (460)
T ss_pred hccCCcccccchhHHHHHHHhcc-cc------------------------------------------------------
Confidence 99876433346788766666653 10
Q ss_pred CcccchhhhhcccccccccccccccCCCCCCCCCCCCCCchhhchhhhhhhhccccccccccccCCCCCCCcccccccCC
Q 006069 233 GREDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGN 312 (662)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~~~p~~~~~~~~~~~~~ 312 (662)
T Consensus 105 -------------------------------------------------------------------------------- 104 (460)
T COG5411 105 -------------------------------------------------------------------------------- 104 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccCccccchhhccCCcccccccccCCCCCCcccccccCCCchhhhchHHHHhhccCCCCEEEEEeeeceeEEE
Q 006069 313 GLKRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYV 392 (662)
Q Consensus 313 ~~~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qmVGi~L 392 (662)
...+|.++.+.||.|+++
T Consensus 105 --------------------------------------------------------------~~eky~~l~s~q~~~~~~ 122 (460)
T COG5411 105 --------------------------------------------------------------SDEKYSLLRSPQLGGILL 122 (460)
T ss_pred --------------------------------------------------------------cCCceEEecchhccCcce
Confidence 123788888999999999
Q ss_pred EEEEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCC
Q 006069 393 SIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSV 472 (662)
Q Consensus 393 ~VfVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~ 472 (662)
.||.+.+-.+.+.+|..+.-+||++|.-+|||+|+++|.+..++||||+|||+||..+ .++|+.||..|.+.++|++
T Consensus 123 ~vf~~~~~~~v~~~V~~~~~KtG~gg~s~nKGav~i~~~~~~t~~cFv~shlaag~~N--~eeR~~Dy~~I~~~i~f~~- 199 (460)
T COG5411 123 RVFSLATNLPVVKPVSGTVKKTGFGGSSSNKGAVAIRFNYERTSFCFVNSHLAAGVNN--IEERIFDYRSIASNICFSR- 199 (460)
T ss_pred EEeeeccccceeccccccccccccceecccccccceeEEeecCCcEEEecchhccccc--HHHHHHHHHHHHHheecCC-
Confidence 9999999999999999999999999999999999999999999999999999999875 6789999999999999964
Q ss_pred CCCCCCCCCCCcceEEEeCccCccccCChHHHHHHHHhhh--HHHHhhcChhhhhhccchhhHHHHhcCCCccCccccCc
Q 006069 473 FDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKR--WDKLINSDQMIYQNCLSFHLSKELHSGHVFEGWKEGVI 550 (662)
Q Consensus 473 ~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~--~~~LL~~DQ~~~~~~l~~~L~~e~~~g~vF~gf~Eg~I 550 (662)
...|.+||+|||+|||||||++.+++++..+...+ +..|+++|| |..|+..|.+|.||+|..|
T Consensus 200 -----g~~I~~hdti~w~GDlNyRVts~~e~v~~~~~~~~g~~~~l~~~Dq----------L~~e~~~g~~f~~f~E~~i 264 (460)
T COG5411 200 -----GLRIYDHDTIFWLGDLNYRVTSTNEEVRPEIASDDGRLDKLFEYDQ----------LLWEMEVGNVFPGFKEPVI 264 (460)
T ss_pred -----CceecccceEEEecccCceeecCchhcchhhhCCcchhhhhhhhhh----------Hhhhhcccccccceecccc
Confidence 24689999999999999999999999999998877 788999999 9999999999999999999
Q ss_pred ccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecCceeEEeeccCC-CCCCCCcCceeEEEEEEEeeCHHHH
Q 006069 551 NFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAE-ILLSDHRPVSSTFLVQVEVLDHRKL 626 (662)
Q Consensus 551 ~FpPTYKy~~~Sd~Yd~~~~k~s~KkR~PSWCDRIL~~g~~i~~l~Y~s~e-~~~SDHrPV~A~F~v~V~vi~~~kl 626 (662)
+|||||||+.|++.|++ ++|.|+||||||||+++...++++|.+.. +++||||||+|+|.+.+.++|+.+.
T Consensus 265 ~FpPTYKfd~gt~~ydt-----sdk~RiPsWtDRIl~~s~~~~p~sY~sip~l~~SDHrPV~a~~~~~i~~~d~~~k 336 (460)
T COG5411 265 TFPPTYKFDYGTDEYDT-----SDKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDHRPVYATFRAKIKVVDPSKK 336 (460)
T ss_pred cCCCceEeecCCccccc-----cccccCCchhhhhhhhccccccccccccCceeecCCCeEEEEEecceEEeCcchh
Confidence 99999999999999985 78999999999999999999999999976 9999999999999999999997653
No 5
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=99.97 E-value=9.7e-31 Score=268.89 Aligned_cols=175 Identities=26% Similarity=0.423 Sum_probs=131.0
Q ss_pred ccCceeEEEEEEEcCeEEEeeccccCCCCCchh---------HHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEe
Q 006069 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGA---------EQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWF 490 (662)
Q Consensus 420 lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~---------~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~ 490 (662)
++.||.+.+|++|+++.|||||+||.++..+.. ...|..++..|+.+.. . .+..++++|||
T Consensus 65 wSRKGfmrtrw~i~~t~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~--~--------~~~~~~~lF~f 134 (356)
T PTZ00312 65 RSRKGFLLLSLRLGTVVVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECS--A--------FISPSDPLFIF 134 (356)
T ss_pred ccccceEEEEEEECCEEEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHh--h--------ccCCCCcEEEe
Confidence 789999999999999999999999999987753 3457888888887522 1 23457999999
Q ss_pred CccCccccCChH--HHH------HHHH------hhhHHHHhhcChhhhhhccchhhHHHHhc-------------CCCcc
Q 006069 491 GDLNYRLNMMDT--EVR------ELVA------QKRWDKLINSDQMIYQNCLSFHLSKELHS-------------GHVFE 543 (662)
Q Consensus 491 GDLNYRI~l~~~--~v~------~lI~------~~~~~~LL~~DQ~~~~~~l~~~L~~e~~~-------------g~vF~ 543 (662)
||||||++...- -++ ..++ ...|.+|+++|| |.+|++. .+.|.
T Consensus 135 GDfNyRld~~~~~e~L~ek~Ql~ve~~~g~~~~P~hf~~Lf~~dQ----------l~rE~~~fd~e~q~l~~~va~~s~~ 204 (356)
T PTZ00312 135 GDFNVRLDGHNLLEWLKEKMQIDVKIEVKRVRAPDRFWELFTNPQ----------TQGEIRRFDLELQRLMDVVAQQSGV 204 (356)
T ss_pred ccceeeeccccHHHHhcccccccccccccccCChHHHHHHhcChh----------hhHHHhhhhhhhhhhhhhhhhhccc
Confidence 999999995421 111 1111 346899999999 8888874 67788
Q ss_pred CccccCcccCCCCCcccC----------------CccCC---------CCC---------------------------C-
Q 006069 544 GWKEGVINFPPTYKYEIN----------------SDRYV---------GEN---------------------------P- 570 (662)
Q Consensus 544 gf~Eg~I~FpPTYKy~~~----------------Sd~Yd---------~~~---------------------------~- 570 (662)
++.|.+|+||||||-... ...|- .+. |
T Consensus 205 eLaE~pI~FpPTYkrva~r~~~~~~~~~a~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~g~~d~i~~~~~l~~~ta~P~ 284 (356)
T PTZ00312 205 ELAEFAIRFPPTYPRVAERTNTGAQIESAGANVAASVYGVKDVAAKLDNQQRKKAAKDLKGTADAILASVVLTRVTAIPH 284 (356)
T ss_pred chhcccccCCCcchhhhhhcCCcchhhhcccccccchhcccccccccccccccchhhhccCccceeeeeeeeecccccCC
Confidence 999999999999993221 11110 000 1
Q ss_pred CCCCcccCCCcccceeeecCc----------------------------eeEEeeccCCCCCCCCcCceeEE
Q 006069 571 KEGEKKRSPAWCDRILWLGKG----------------------------IKQLAYTRAEILLSDHRPVSSTF 614 (662)
Q Consensus 571 k~s~KkR~PSWCDRIL~~g~~----------------------------i~~l~Y~s~e~~~SDHrPV~A~F 614 (662)
....+.|+|||||||||...+ .....|.+.++..+||.+|...|
T Consensus 285 r~~~~~r~pawcdrvl~~~~~~~~~~~~r~~~a~~~~~aa~~~~~~~~~~~~~~Y~s~~L~htDH~~V~~lF 356 (356)
T PTZ00312 285 RNYCRDRLPAWCDRVLWNPAGLELMTGDRSRSASPQSAAASKGDQASGQSCRYAYRSIDLIHTDHDGVFLLF 356 (356)
T ss_pred cchhcccchhhhheeeechhhhhhhcCccccCCCcchhhhccCCcccchhhhheeeeeeeeeccCccceecC
Confidence 234589999999999998432 23467899999999999999876
No 6
>KOG0565 consensus Inositol polyphosphate 5-phosphatase and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=7.9e-29 Score=233.41 Aligned_cols=142 Identities=45% Similarity=0.722 Sum_probs=129.5
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHh
Q 006069 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (662)
Q Consensus 378 ~Yv~v~S~qmVGi~L~VfVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN 457 (662)
.|+++.+.||+|+++.+|++.++..++.+++++++++|+||++||||+|+++|.++++.+|||||||+||.++.. ++||
T Consensus 2 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~v~~g~~~~~~nkg~v~is~~~~~~~~~~v~~hl~~~~~~~~-~~r~ 80 (145)
T KOG0565|consen 2 LYVVVASGRLVGIDLSVLLRRDLLDHSFNVRVSEVGTGIMGYLGNKGGVAISFVLSQTSFCFVISHLTSGVHKVY-ERRN 80 (145)
T ss_pred cEEEEeeeEEEEEEEEEEehhhhhhhhcccEEEEecceEEEEeCCCCeEEEEEEEcCceEEEEEecccccchhhH-HHhh
Confidence 699999999999999999999999999999999999999999999999999999999999999999999988643 3399
Q ss_pred hhHHHHHhhcccCCCCCCCCCCCCCC-cceEEEeCccCccccCC-hHHHHHHHHhhhHHHHhhcC
Q 006069 458 SDVSEIRRRTRFSSVFDTDQPQTIPS-HDQIFWFGDLNYRLNMM-DTEVRELVAQKRWDKLINSD 520 (662)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~~p~~I~d-hD~Vfw~GDLNYRI~l~-~~~v~~lI~~~~~~~LL~~D 520 (662)
+|+.+|+.++.|........|..+.. ||.|||+||||||+..+ +.+++.++..+.|..|+++|
T Consensus 81 ~d~~~i~~~~~~~~~~~~~~~~~~~~~~D~v~w~GDlN~Rl~~~~~~~~~~~~~~~~~~~l~~~d 145 (145)
T KOG0565|consen 81 EDYQEILNGLRFPSVSPASEPVISDGEHDTVIWLGDLNYRLSGPSYLEVRTLISVKSRDGLLEKD 145 (145)
T ss_pred ccHHHHHhhccccccCcccccccccccccEEEEecceeeeecCcccccchhhhhhcchhhhhccC
Confidence 99999999999986555555655554 89999999999999988 88899999999999998876
No 7
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=99.76 E-value=2.8e-19 Score=184.85 Aligned_cols=178 Identities=28% Similarity=0.425 Sum_probs=108.5
Q ss_pred ccCceeEEEEEEEcCeEEEeeccccCCCCCch---------hHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEe
Q 006069 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDG---------AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWF 490 (662)
Q Consensus 420 lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~---------~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~ 490 (662)
++.||-.-.++.|++..|.|||.||-....+- ....|.+.+.-+|.++.= . =...|.+|+|
T Consensus 154 ~~rkg~~~~r~~I~~k~fdfVN~hLFhD~snla~~~sspt~ys~~R~~al~~vL~el~~-----~-----~~~~~~~fVf 223 (391)
T KOG1976|consen 154 NQRKGFLLARFRIHGKEFDFVNLHLFHDVSNLATKNSSPTKYSSKREQALEMVLKELDE-----E-----GLRNDAIFVF 223 (391)
T ss_pred hhhccccceeEEEcCceeeeeehhhhcchhhhhhhcCChhhhhhhHHHHHHHHHHHHHh-----h-----ccCceEEEEe
Confidence 57799999999999999999999997765431 123455555555554321 0 1235789999
Q ss_pred CccCccccCChHHHHHHHHhhhHHHHhhcCh--h---hhh-------hcc------ch---------h--------hHHH
Q 006069 491 GDLNYRLNMMDTEVRELVAQKRWDKLINSDQ--M---IYQ-------NCL------SF---------H--------LSKE 535 (662)
Q Consensus 491 GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQ--~---~~~-------~~l------~~---------~--------L~~e 535 (662)
||||||++... -+.-|.+..--+..-+.|+ + ++. +|. .| + ..+|
T Consensus 224 GdfNfrLds~s-~ln~l~a~q~~qtv~~~d~~~vv~~ifr~esd~drkv~l~vEkk~FDyfnh~~f~d~~r~~~~~~dkE 302 (391)
T KOG1976|consen 224 GDFNFRLDSTS-LLNYLAATQLVQTVAKKDEDGVVESIFRVESDGDRKVTLTVEKKRFDYFNHDWFFDLGRGMVKRYDKE 302 (391)
T ss_pred cccccccchHH-HHHHHhcCCccchhhhcccCcceeeEEeecccCCceeEEEeehhhcchhhhHHHHHcCchhhhhcchH
Confidence 99999998542 1111111110010001110 0 000 000 00 0 1112
Q ss_pred HhcCCCccC-ccccCcccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecCc----------eeEEeecc--CCC
Q 006069 536 LHSGHVFEG-WKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKG----------IKQLAYTR--AEI 602 (662)
Q Consensus 536 ~~~g~vF~g-f~Eg~I~FpPTYKy~~~Sd~Yd~~~~k~s~KkR~PSWCDRIL~~g~~----------i~~l~Y~s--~e~ 602 (662)
.. .|+. ..|..|.|||||.|..+... ..+..+.|+||||||||+.... -+.+.|.. .+.
T Consensus 303 l~---nf~~kl~E~~i~FpPsypysed~~~-----~E~~m~TrcPAWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg~e~ 374 (391)
T KOG1976|consen 303 LA---NFAFKLKEETIFFPPSYPYSEDDSG-----KEEFMRTRCPAWCDRILMNDRANELVKHDEFEASGLYYGLVGEEK 374 (391)
T ss_pred HH---HHHHHHhheeecCCCCCCCCcCccc-----hHHHHhccChHhhhhhhcCccHHHHhhccccCcccceeccccccc
Confidence 21 3443 88999999999999865321 1123579999999999998642 12477887 579
Q ss_pred CCCCCcCceeEEEE
Q 006069 603 LLSDHRPVSSTFLV 616 (662)
Q Consensus 603 ~~SDHrPV~A~F~v 616 (662)
++.|||||...|.+
T Consensus 375 c~GdHKpVfl~~~i 388 (391)
T KOG1976|consen 375 CVGDHKPVFLHASI 388 (391)
T ss_pred ccCCCcceEEEEee
Confidence 99999999998875
No 8
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=98.15 E-value=4.7e-05 Score=80.19 Aligned_cols=71 Identities=23% Similarity=0.345 Sum_probs=52.5
Q ss_pred cccCceeEEEEEEEcCeEEEeeccccCCCCC----chhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccC
Q 006069 419 YMGNKGSVSVSMTLFQSRLCLVCSHLTSGQK----DGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (662)
Q Consensus 419 ~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~----~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (662)
...+||.+.+++.+.+..+.|+|+||.+... ......|..++.+|.+.+.- ..+...+.||++||||
T Consensus 117 ~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i~~---------~~~~~~~pvIl~GDfN 187 (283)
T TIGR03395 117 NLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFIDS---------KNIPKDETVLIGGDLN 187 (283)
T ss_pred cccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHHhh---------ccCCCCceEEEEeeCC
Confidence 4578999999999999999999999998531 11246789999999764321 0122346799999999
Q ss_pred cccc
Q 006069 495 YRLN 498 (662)
Q Consensus 495 YRI~ 498 (662)
-.-+
T Consensus 188 ~~~~ 191 (283)
T TIGR03395 188 VNKG 191 (283)
T ss_pred CCCC
Confidence 7643
No 9
>PRK05421 hypothetical protein; Provisional
Probab=98.04 E-value=5.4e-05 Score=78.46 Aligned_cols=58 Identities=16% Similarity=0.138 Sum_probs=41.2
Q ss_pred ceeEEEEEEE-cCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006069 423 KGSVSVSMTL-FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (662)
Q Consensus 423 KGaVsVr~~i-~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (662)
||++.+.+.+ .+..|.++|+||.+.... ...|..++..|.+.+. . . ...+|++||||-
T Consensus 135 r~~l~a~~~~~~g~~l~v~ntHl~~~~~~--~~~r~~q~~~l~~~~~--~---~--------~~p~Il~GDFN~ 193 (263)
T PRK05421 135 KSALITEYPLPNGRTLLVVNIHAINFSLG--VDVYSKQLEPIGDQIA--H---H--------SGPVILAGDFNT 193 (263)
T ss_pred ceeEEEEEEeCCCCEEEEEEECccccCcC--hHHHHHHHHHHHHHHH--h---C--------CCCEEEEccccc
Confidence 7888888888 566799999999865322 3457778877765331 0 0 136999999994
No 10
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=97.99 E-value=1.7e-05 Score=76.08 Aligned_cols=98 Identities=24% Similarity=0.321 Sum_probs=53.9
Q ss_pred eeEEEEEEEeccccccccceeEeEEeeccc---ccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHH
Q 006069 388 VGIYVSIWVRKRLRRHINNLKVSPVGVGLM---GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIR 464 (662)
Q Consensus 388 VGi~L~VfVr~~l~~~I~~v~vs~V~tGl~---G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIl 464 (662)
.+..++|++|.++...+........+.+.. ....+++.+.+++. +..|+++|+|+.+... .|..+..+++
T Consensus 72 ~~~g~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~~~H~~~~~~-----~~~~~~~~~~ 144 (249)
T PF03372_consen 72 GGYGVAILSRSPIFSSVSYVFSLFSKPGIRIFRRSSKSKGIVPVSIN--GKPITVVNVHLPSSND-----ERQEQWRELL 144 (249)
T ss_dssp SSEEEEEEESSCCCEEEEEEEEEESSSTTCEEEEEEEEEEEEEEEEE--TEEEEEEEEETTSHHH-----HHHHHHHHHH
T ss_pred cCceEEEEEcccccccccccccccccccccccccccccccccccccc--ceEEEeeeccccccch-----hhhhhhhhhh
Confidence 556677888887655444433332233332 22455666677766 9999999999998532 2222222333
Q ss_pred hhcc-cCCCCCCCCCCCCCCcceEEEeCccCccccCCh
Q 006069 465 RRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMD 501 (662)
Q Consensus 465 rr~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~ 501 (662)
..+. +.. ..+ ...+|++||||.+.....
T Consensus 145 ~~~~~~~~----~~~-----~~~~iv~GDfN~~~~~~~ 173 (249)
T PF03372_consen 145 ARIQKIYA----DNP-----NEPVIVMGDFNSRPDSRD 173 (249)
T ss_dssp HHHHHHHH----TSS-----CCEEEEEEE-SS-BSSGG
T ss_pred hhhhhccc----ccc-----cceEEEEeecccCCccch
Confidence 2211 100 000 016999999999987543
No 11
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=97.08 E-value=0.0042 Score=65.21 Aligned_cols=55 Identities=18% Similarity=0.314 Sum_probs=40.9
Q ss_pred ceeEEEEEEEc-CeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccC
Q 006069 423 KGSVSVSMTLF-QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (662)
Q Consensus 423 KGaVsVr~~i~-~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (662)
.|++-+.+... +..|-+||+||.=. .+.|.++...|+..+.+. +-..++++||||
T Consensus 119 Rgal~a~~~~~~g~~l~V~~~HL~l~-----~~~R~~Q~~~L~~~~~l~------------~~~p~vl~GDFN 174 (259)
T COG3568 119 RGALLAEIELPGGKPLRVINAHLGLS-----EESRLRQAAALLALAGLP------------ALNPTVLMGDFN 174 (259)
T ss_pred ceeEEEEEEcCCCCEEEEEEEecccc-----HHHHHHHHHHHHhhccCc------------ccCceEEEccCC
Confidence 68888888874 66899999999954 356888888888733221 112799999999
No 12
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.72 E-value=0.01 Score=59.81 Aligned_cols=34 Identities=32% Similarity=0.580 Sum_probs=23.0
Q ss_pred EEeeeeCCCCCCCCCCCc-ccccCCCCCCCEEEEeeeee
Q 006069 108 TIGTWNVAGRQPYEDLDI-DDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 108 fvgTwNV~G~~p~~~ldl-~~WL~~~~~~DIYvlGfQEi 145 (662)
.|.||||+|..... ..+ .+||... .||| |+|||+
T Consensus 2 ri~t~Nv~g~~~~~-~~~~~~~l~~~-~~DI--v~LQE~ 36 (255)
T TIGR00633 2 KIISWNVNGLRARL-HKLFLDWLKEE-QPDV--LCLQET 36 (255)
T ss_pred EEEEEecccHHHHh-hccHHHHHHhc-CCCE--EEEEec
Confidence 57899999954322 234 7777554 4587 667998
No 13
>PRK11756 exonuclease III; Provisional
Probab=96.53 E-value=0.014 Score=60.11 Aligned_cols=66 Identities=8% Similarity=0.181 Sum_probs=38.6
Q ss_pred CceeEEEEEEEcCeEEEeeccccCCCCCc---hhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKD---GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 422 NKGaVsVr~~i~~TsfcFVn~HLaAg~~~---~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
..+.+.+.+...+..|.|+|+|++.+... .....|..-+..|...+.= . ......+|++||||---
T Consensus 88 ~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~--~--------~~~~~pvIl~GDfN~~~ 156 (268)
T PRK11756 88 QRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLET--E--------LSPDNPLLIMGDMNISP 156 (268)
T ss_pred cCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHH--H--------hccCCCEEEEeecccCC
Confidence 35788888887666699999999887532 1122233333333322110 0 01124699999999643
No 14
>PTZ00297 pantothenate kinase; Provisional
Probab=96.14 E-value=0.047 Score=69.32 Aligned_cols=69 Identities=19% Similarity=0.266 Sum_probs=40.9
Q ss_pred cCceeEEEEEEEc----C-eEEEeeccccCCCCCchhHHHHhhhHHHHHhhcc--cCCCCCCCCCCCCCCcceEEEeCcc
Q 006069 421 GNKGSVSVSMTLF----Q-SRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR--FSSVFDTDQPQTIPSHDQIFWFGDL 493 (662)
Q Consensus 421 GNKGaVsVr~~i~----~-TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~--F~~~~~~~~p~~I~dhD~Vfw~GDL 493 (662)
.+||.+.+.+.+. + ..+-|+|+||.+.... ..|.+++.+|.+-+. .....+ ...+.....+|+.|||
T Consensus 131 ~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~---~~R~~Q~~ql~~~i~~~i~~~~~---~~~~~~~~PvILaGDF 204 (1452)
T PTZ00297 131 VRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSL---PSTSSQVQETRRFVESVIANVYE---QNNDGAEIPFVIAGDF 204 (1452)
T ss_pred cccceEEEEEEccccCCCCceEEEEEeCCCCCCCc---chHHHHHHHHHHHHHHhhhhhcc---cccCCCCCCEEEEeeC
Confidence 4788888888874 2 5799999999987543 124444555543211 100000 0122234589999999
Q ss_pred Cc
Q 006069 494 NY 495 (662)
Q Consensus 494 NY 495 (662)
|=
T Consensus 205 N~ 206 (1452)
T PTZ00297 205 NI 206 (1452)
T ss_pred CC
Confidence 93
No 15
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=95.03 E-value=0.2 Score=52.17 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=25.9
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 108 fvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+.||||||..-.....+.+||... .||| |+|||+
T Consensus 2 ki~swNVNgir~~~~~~~~~~l~~~-~~DI--iclQEt 36 (250)
T PRK13911 2 KLISWNVNGLRACMTKGFMDFFNSV-DADV--FCIQES 36 (250)
T ss_pred EEEEEEeCChhHhhhhhHHHHHHhc-CCCE--EEEEee
Confidence 5789999996543333578999654 4687 788999
No 16
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=93.92 E-value=0.26 Score=50.39 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=23.1
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 108 fvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.|.||||+|..... ..+..||... .||| |+|||+
T Consensus 2 ri~t~Ni~g~~~~~-~~~~~~l~~~-~~DI--i~LQE~ 35 (254)
T TIGR00195 2 KIISWNVNGLRARL-HKGLAWLKEN-QPDV--LCLQET 35 (254)
T ss_pred EEEEEEcCcHHHhH-HHHHHHHHhc-CCCE--EEEEec
Confidence 58999999954322 2367888554 4687 558996
No 17
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.84 E-value=0.33 Score=52.38 Aligned_cols=60 Identities=17% Similarity=0.236 Sum_probs=38.7
Q ss_pred cCceeEEEEEEE-cCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006069 421 GNKGSVSVSMTL-FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (662)
Q Consensus 421 GNKGaVsVr~~i-~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (662)
+-||++.+.... +++.+..+|.|..-..-. ....| +...++.+.+. +.. -.||+.||||=
T Consensus 173 ~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~-~~~~~-~ql~~l~~~i~-----~~~--------gpvIlaGDfNa 233 (309)
T COG3021 173 LPKSALATAYPLPDGTELTVVALHAVNFPVG-TDPQR-AQLLELGDQIA-----GHS--------GPVILAGDFNA 233 (309)
T ss_pred CCccceeEEEEcCCCCEEEEEeeccccccCC-ccHHH-HHHHHHHHHHH-----cCC--------CCeEEeecCCC
Confidence 568887777664 578999999999843322 23344 56666655321 111 25999999995
No 18
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=92.31 E-value=0.054 Score=56.38 Aligned_cols=56 Identities=14% Similarity=0.139 Sum_probs=32.0
Q ss_pred eEEEEEEEcCeEEEeeccccCCCCCch-hHHHH---hhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006069 425 SVSVSMTLFQSRLCLVCSHLTSGQKDG-AEQRR---NSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (662)
Q Consensus 425 aVsVr~~i~~TsfcFVn~HLaAg~~~~-~~~rR---N~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (662)
+-.|...+. .|.+||+..+++.... ....| ..++.+.+..+. ....+||+||||=-
T Consensus 89 GR~I~~~~~--~~~l~nvY~Pn~~~~~~r~~~K~~~~~~~~~~l~~l~--------------~~~~~Ii~GD~Nva 148 (250)
T PRK13911 89 GRVITCEFE--SFYLVNVYTPNSQQALSRLSYRMSWEVEFKKFLKALE--------------LKKPVIVCGDLNVA 148 (250)
T ss_pred CCEEEEEEC--CEEEEEEEecCCCCCCcchHHHHHHHHHHHHHHHhcc--------------cCCCEEEEccccCC
Confidence 334454453 5899999999986431 22222 233444444221 12479999999943
No 19
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=90.94 E-value=1.7 Score=51.07 Aligned_cols=63 Identities=16% Similarity=0.218 Sum_probs=40.4
Q ss_pred EEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccccCChHHHHHHHHhhh
Q 006069 436 RLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKR 512 (662)
Q Consensus 436 sfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~ 512 (662)
.||++|+||-.+.... .-|..+...|++.+.= +.. .. .-.||++||||- .+.+.+-+++.++.
T Consensus 418 ~l~VaNTHL~~~p~~~--dvRl~Q~~~Ll~~l~~--~~~---~~----~~PvIlcGDFNS---~P~S~vy~lLt~G~ 480 (606)
T PLN03144 418 LLCVANTHIHANQELK--DVKLWQVHTLLKGLEK--IAA---SA----DIPMLVCGDFNS---VPGSAPHCLLATGK 480 (606)
T ss_pred EEEEEEeeeccCCccc--hhHHHHHHHHHHHHHH--Hhh---cC----CCceEEeccCCC---CCCChhhhhhhcCC
Confidence 6999999997765433 3456666667664321 000 00 125999999995 55567777887764
No 20
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=88.00 E-value=3.6 Score=45.62 Aligned_cols=107 Identities=18% Similarity=0.203 Sum_probs=67.0
Q ss_pred EEeeeceeEEEEEEEeccccccccce-----eEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCC---CchhH
Q 006069 382 IVSKQMVGIYVSIWVRKRLRRHINNL-----KVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQ---KDGAE 453 (662)
Q Consensus 382 v~S~qmVGi~L~VfVr~~l~~~I~~v-----~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~---~~~~~ 453 (662)
..|.-| |--|+||.|--+..-..+. .-..+=.| -..|-||--..++.+.+..+.+-|+||-|-- ++...
T Consensus 73 FHSGim-GaGL~vfSK~PI~~t~~~~y~lNG~p~~i~rG--DWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D~YL 149 (422)
T KOG3873|consen 73 FHSGIM-GAGLCVFSKHPILETLFHRYSLNGYPHAIHRG--DWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQNDEYL 149 (422)
T ss_pred hhcccc-cCceEEeecCchhhhhhhccccCCccceeeec--cccccceeEEEEEeeCCEEeeeeehhccccccccCchhh
Confidence 355566 8889999987764332221 11111122 3357788777888899999999999998852 22234
Q ss_pred HHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc-CCh
Q 006069 454 QRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN-MMD 501 (662)
Q Consensus 454 ~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~-l~~ 501 (662)
-.|-.+..++.+-++- +-...|.||..||||-+=. ++.
T Consensus 150 ~HR~~QAwdlaqfi~~----------t~q~~~vVI~~GDLN~~P~dl~~ 188 (422)
T KOG3873|consen 150 CHRVAQAWDLAQFIRA----------TRQNADVVILAGDLNMQPQDLGH 188 (422)
T ss_pred hHHHHHHHHHHHHHHH----------HhcCCcEEEEecCCCCCccccce
Confidence 5566666665442211 1134689999999998853 444
No 21
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=87.32 E-value=0.28 Score=43.48 Aligned_cols=33 Identities=21% Similarity=0.114 Sum_probs=17.3
Q ss_pred CCcccceeeecCceeE-EeeccCCCCCCCCcCce
Q 006069 579 PAWCDRILWLGKGIKQ-LAYTRAEILLSDHRPVS 611 (662)
Q Consensus 579 PSWCDRIL~~g~~i~~-l~Y~s~e~~~SDHrPV~ 611 (662)
.+-=|+||....-... ..-.......|||+||+
T Consensus 86 ~s~iD~~~~s~~~~~~~~~~~~~~~~~SDH~~I~ 119 (119)
T PF14529_consen 86 GSRIDLILTSDNLLSWCVWVISSDDSGSDHCPIT 119 (119)
T ss_dssp EE--EEEEEECCGCCCEEEEEETTSSSSSB--EE
T ss_pred CceEEEEEECChHHhcCcEEEeCCCCCCCccCCC
Confidence 4456888887643322 11122467889999985
No 22
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=87.23 E-value=0.1 Score=55.05 Aligned_cols=34 Identities=35% Similarity=0.715 Sum_probs=24.8
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 108 fvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+.||||||.--.-.. +-+||....| || |++||+
T Consensus 2 kI~SwNVNgiRar~~~-~~~~l~~~~p-DV--lclQEt 35 (261)
T COG0708 2 KIASWNVNGLRARLKK-LLDWLEEEQP-DV--LCLQET 35 (261)
T ss_pred eeEEEehhhHHHHHHH-HHHHHHHhCC-CE--EEEEec
Confidence 4789999995322222 7899977555 86 899999
No 23
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=83.77 E-value=3.3 Score=44.34 Aligned_cols=62 Identities=21% Similarity=0.349 Sum_probs=40.9
Q ss_pred EEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc
Q 006069 427 SVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (662)
Q Consensus 427 sVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (662)
.+-..|.+..+||.++||.+-... ..+|.+.+.+.+.+++=. + .++..-.||+-||+|.|=.
T Consensus 196 I~Ev~v~G~Kl~l~tsHLEStr~h--~P~r~~qF~~~~~k~~Ea-I-------e~lPnA~ViFGGD~NlrD~ 257 (349)
T KOG2756|consen 196 IVEVNVSGNKLCLMTSHLESTRGH--APERMNQFKMVLKKMQEA-I-------ESLPNATVIFGGDTNLRDR 257 (349)
T ss_pred EEEEeecCceEEEEeccccCCCCC--ChHHHHHHHHHHHHHHHH-H-------HhCCCceEEEcCcccchhh
Confidence 344557788899999999997643 456777777666544310 0 0112246999999999843
No 24
>PRK11756 exonuclease III; Provisional
Probab=77.16 E-value=0.61 Score=48.12 Aligned_cols=34 Identities=18% Similarity=0.400 Sum_probs=22.9
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 108 fvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.|.||||+|..-.- ..|..||... .||| |+|||+
T Consensus 2 ri~T~Nv~g~~~~~-~~i~~~i~~~-~pDI--i~LQE~ 35 (268)
T PRK11756 2 KFVSFNINGLRARP-HQLEAIIEKH-QPDV--IGLQET 35 (268)
T ss_pred EEEEEEcCCHHHHH-HHHHHHHHhc-CCCE--EEEEec
Confidence 46799999953211 1267888553 4687 669998
No 25
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=73.81 E-value=4.5 Score=46.31 Aligned_cols=96 Identities=22% Similarity=0.177 Sum_probs=57.9
Q ss_pred EEEEEeccccccccceeE--eEEeecccccccCceeEEEEEEEcCe---EEEeeccccCCCCCchhHHHHhhhHHHHHhh
Q 006069 392 VSIWVRKRLRRHINNLKV--SPVGVGLMGYMGNKGSVSVSMTLFQS---RLCLVCSHLTSGQKDGAEQRRNSDVSEIRRR 466 (662)
Q Consensus 392 L~VfVr~~l~~~I~~v~v--s~V~tGl~G~lGNKGaVsVr~~i~~T---sfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr 466 (662)
++|+-++.+-+.+.+-.+ .-.+.|++..-.=++.|+.+|++-+. .++..|+||-=+...+++ |-+++.-|+..
T Consensus 204 ~ai~w~~~~F~lv~~~~l~y~~~~~~l~n~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~~v--rL~Q~~iiL~~ 281 (495)
T KOG2338|consen 204 VAILWHSAKFKLVNHSELNYFDSGSALANRDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRSDV--RLAQVYIILAE 281 (495)
T ss_pred EEEEEecccceecccchhhcccccchhhcccceeEEEEEEecccCcccCceEEEeeeeeecCcccch--hhHHHHHHHHH
Confidence 334445554344433222 23556665533335667777766655 899999999998776654 66777777765
Q ss_pred cc-cCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 467 TR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 467 ~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
+. |.... ..|=+||++||||--=
T Consensus 282 ~~~~~~~~--------~~~~pi~l~GDfNt~p 305 (495)
T KOG2338|consen 282 LEKMSKSS--------KSHWPIFLCGDFNTEP 305 (495)
T ss_pred HHHHHhhc--------ccCCCeEEecCCCCCC
Confidence 42 21100 0355899999999544
No 26
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=73.75 E-value=14 Score=39.59 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=55.0
Q ss_pred CCCCEEEEEeeece----eEEEEEEEeccccccccceeEeEEee-cccccccCceeEEEEEEEcCe---EEEeeccccCC
Q 006069 375 SRPKYVRIVSKQMV----GIYVSIWVRKRLRRHINNLKVSPVGV-GLMGYMGNKGSVSVSMTLFQS---RLCLVCSHLTS 446 (662)
Q Consensus 375 ~~~~Yv~v~S~qmV----Gi~L~VfVr~~l~~~I~~v~vs~V~t-Gl~G~lGNKGaVsVr~~i~~T---sfcFVn~HLaA 446 (662)
+...|-.+.|..+. |....++-|++....+..-...- +. |-.. .=.-=...++|+...+ .|.+|++|+.+
T Consensus 76 ~~~~Y~~v~s~r~gr~~~~E~~a~~Yr~drv~v~~~~~f~d-~~~~~~~-~F~ReP~~~~F~~~~~~~~~F~li~~H~~p 153 (276)
T smart00476 76 SPNTYSYVSSEPLGRNSYKEQYLFLYRSDLVSVLDSYLYDD-GCECGND-VFSREPFVVKFSSPSTAVKEFVIVPLHTTP 153 (276)
T ss_pred CCCCceEEecCCCCCCCCCEEEEEEEecceEEEcccceecC-CCCCccc-cccccceEEEEEeCCCCCccEEEEEecCCh
Confidence 34577777766543 46666777777644333222110 00 0000 0012345677777765 79999999988
Q ss_pred CCCchhHHHHhhhHHH-HHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 447 GQKDGAEQRRNSDVSE-IRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 447 g~~~~~~~rRN~D~~e-Ilrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
.. ..++...+.+ ++.... . . ..+-||++||||=--
T Consensus 154 ~~----~~~e~~aL~~v~~~~~~--~---------~-~~~~villGDFNa~~ 189 (276)
T smart00476 154 EA----AVAEIDALYDVYLDVRQ--K---------W-GTEDVIFMGDFNAGC 189 (276)
T ss_pred HH----HHHHHHHHHHHHHHHHH--h---------h-ccCCEEEEccCCCCC
Confidence 52 2333333232 222110 0 0 125699999999743
No 27
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=68.26 E-value=1.9 Score=43.40 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=30.3
Q ss_pred eEEEeeccccCCCCCchh--HHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc
Q 006069 435 SRLCLVCSHLTSGQKDGA--EQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (662)
Q Consensus 435 TsfcFVn~HLaAg~~~~~--~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (662)
..|.++|+|++++...+. ...|.+.+..+.+.+. .. +.....+|++||||--..
T Consensus 100 ~~~~i~~vy~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~--------~~~~~~~Il~GDFN~~~~ 155 (255)
T TIGR00633 100 DGFTVVNVYVPNGGSRGLERLEYKLQFWDALFQYYE--KE--------LDAGKPVIICGDMNVAHT 155 (255)
T ss_pred CCEEEEEEEccCCCCCCchhHHHHHHHHHHHHHHHH--HH--------HhcCCcEEEEeecccCCC
Confidence 368899999988763221 2334444444433210 00 012247999999996553
No 28
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=65.03 E-value=2.1 Score=43.71 Aligned_cols=53 Identities=9% Similarity=0.201 Sum_probs=27.9
Q ss_pred EEEeeccccCCCCCch--hHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc
Q 006069 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (662)
Q Consensus 436 sfcFVn~HLaAg~~~~--~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (662)
.|.++|+|+.++.... ....|..-+..+...+. ... .....+|++||||-...
T Consensus 98 ~~~l~~~~~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~~--------~~~~pvIi~GDfN~~~~ 152 (254)
T TIGR00195 98 SFLVINGYFPNGSRDDSEKLPYKLQWLEALQNYLE--KLV--------DKDKPVLICGDMNIAPT 152 (254)
T ss_pred CEEEEEEEccCCCCCCCccHHHHHHHHHHHHHHHH--HHH--------hcCCcEEEEeecccCCC
Confidence 4889999999853222 12233333333332211 000 01136999999995554
No 29
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=62.20 E-value=6.1 Score=42.22 Aligned_cols=54 Identities=13% Similarity=0.174 Sum_probs=34.6
Q ss_pred CceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccC
Q 006069 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (662)
Q Consensus 422 NKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (662)
....+++++ .+ +.|.+.||.+.... .|.+-+..|..- |.+ ..| +..++++||||
T Consensus 141 ~Rpilgi~i--~~--~~ffstH~~a~~~~----da~aiV~~I~~~--f~~----~~~-----~~pw~I~GDFN 194 (271)
T PRK15251 141 SRPIIGIRI--GN--DVFFSIHALANGGT----DAGAIVRAVHNF--FRP----NMR-----HINWMIAGDFN 194 (271)
T ss_pred ccceEEEEe--cC--eEEEEeeecCCCCc----cHHHHHHHHHHH--Hhh----ccC-----CCCEEEeccCC
Confidence 456666765 33 78999999997321 266667777653 210 111 34689999999
No 30
>PRK05421 hypothetical protein; Provisional
Probab=51.07 E-value=8.3 Score=40.18 Aligned_cols=33 Identities=21% Similarity=0.330 Sum_probs=26.7
Q ss_pred cceeeecCceeEEeeccCCCCCCCCcCceeEEEEE
Q 006069 583 DRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQ 617 (662)
Q Consensus 583 DRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~ 617 (662)
|+||.. ++....+.-.+...|||+||.|.|.+.
T Consensus 230 D~I~~~--~~~v~~~~v~~~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 230 DFVFYR--GLNVSKASVLVTRASDHNPLLVEFSLK 262 (263)
T ss_pred ceEEEC--CcEEEEEEcCCCCCCCccCEEEEEEec
Confidence 999974 677677766677899999999999764
No 31
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=40.32 E-value=53 Score=35.31 Aligned_cols=38 Identities=32% Similarity=0.615 Sum_probs=25.6
Q ss_pred EEEeeeeCCCCCCCCCCCccccc-------CCCCCCCEEEEeeeeeeeCC
Q 006069 107 VTIGTWNVAGRQPYEDLDIDDWL-------CTQEPADIYIFGFQEVVPLN 149 (662)
Q Consensus 107 ifvgTwNV~G~~p~~~ldl~~WL-------~~~~~~DIYvlGfQEiV~Ln 149 (662)
..|||||+.|..-.++ +.|= ..++++|| |-|||.=.|.
T Consensus 25 ~~~~twn~qg~s~~~~---~kw~~~v~~l~~~~~~~DI--la~QEags~p 69 (271)
T PRK15251 25 YKVATWNLQGSSASTE---SKWNVNVRQLLSGENPADI--LMVQEAGSLP 69 (271)
T ss_pred ceEEEeecCCCCCCCh---hhhhhhHHHHhcCCCCCCE--EEEEecCCCc
Confidence 4579999999755444 4554 34567887 6689984333
No 32
>TIGR02616 tnaC_leader tryptophanase leader peptide. Members of this family are the apparent leader peptides of tryptophanase operons in Esherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae type b, and related species. All members of the seed alignment are examples ORFs upstream of tryptophanase, with a start codon, a conserved single Trp residue, and several other conserved residues. It is suggested (Konan KV and Yanofsky C) that the nascent peptide interacts with the ribosome once (if) the ribosome reaches the stop codon. Note that this model describes a much broader set (and shorter protein region) than Pfam model pfam08053.
Probab=27.66 E-value=14 Score=26.30 Aligned_cols=16 Identities=38% Similarity=0.764 Sum_probs=12.9
Q ss_pred HHHhhhccCCCCcccc
Q 006069 17 VMKKWLNIKPKVYDFS 32 (662)
Q Consensus 17 v~~Kwlni~~~~~df~ 32 (662)
+..|||||-++-++|-
T Consensus 6 ~~s~WfniD~rIsf~F 21 (26)
T TIGR02616 6 VLSKWFNIDNRISFFF 21 (26)
T ss_pred cCCceEEcchhheecc
Confidence 4679999999887763
No 33
>PF08053 Tna_leader: Tryptophanese operon leader peptide; InterPro: IPR012620 This entry defines the apparent leader peptides of tryptophanase operons in Escherichia coli, Vibrio cholerae, Photobacterium profundum, Haemophilus influenzae, and related species. It has been suggested that these peptides act in cis to alter the behaviour of the translating ribosome []. The tryptophanese (tna) operon leader peptide catalyses the degradation of L-tryptophan to indole, pyruvate and ammonia, enabling the bacteria to utilise tryptophan as a source of carbon, nitrogen and energy. The tna operon of Escherichia coli contains two major structural genes, tnaA and tnaB. Preceding tnaA in the tna operon is a 319 -nucleotide transcribed regulatory region that contains the coding region for a 24-residue leader peptide, TnaC. The RNA sequence in the vicinity of the tnaC stop codon is rich in Cytidylate residues which is required for efficient Rho -dependent termination in the leader region of the tna operon [].; GO: 0031554 regulation of transcription termination, DNA-dependent, 0031556 transcriptional attenuation by ribosome
Probab=25.49 E-value=14 Score=25.12 Aligned_cols=14 Identities=50% Similarity=0.942 Sum_probs=10.6
Q ss_pred HHHhhhccCCCCcc
Q 006069 17 VMKKWLNIKPKVYD 30 (662)
Q Consensus 17 v~~Kwlni~~~~~d 30 (662)
|-.|||||..|--|
T Consensus 8 vtskwfnidnkivd 21 (24)
T PF08053_consen 8 VTSKWFNIDNKIVD 21 (24)
T ss_pred EeeeeEeccCeecc
Confidence 34699999887654
No 34
>KOG3870 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.84 E-value=34 Score=38.62 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=13.6
Q ss_pred CCcceEEEeCccCccc
Q 006069 482 PSHDQIFWFGDLNYRL 497 (662)
Q Consensus 482 ~dhD~Vfw~GDLNYRI 497 (662)
...+.||+=||||||=
T Consensus 350 ~~S~LvIFKGDLNYRK 365 (434)
T KOG3870|consen 350 QKSSLVIFKGDLNYRK 365 (434)
T ss_pred hhCcEEEEeccccHHH
Confidence 4578999999999983
No 35
>PRK09806 tryptophanase leader peptide; Provisional
Probab=22.00 E-value=17 Score=25.13 Aligned_cols=15 Identities=47% Similarity=0.877 Sum_probs=11.1
Q ss_pred HHHhhhccCCCCccc
Q 006069 17 VMKKWLNIKPKVYDF 31 (662)
Q Consensus 17 v~~Kwlni~~~~~df 31 (662)
|-.|||||..|--|.
T Consensus 8 vtskwfnidnkivdh 22 (26)
T PRK09806 8 VTSKWFNIDNKIVDH 22 (26)
T ss_pred EeeeEEeccCeeecc
Confidence 346999998876553
Done!