Query 006069
Match_columns 662
No_of_seqs 382 out of 1183
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 15:07:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006069.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/006069hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mtc_A Type II inositol-1,4,5- 100.0 6.6E-91 2.2E-95 729.5 32.6 229 378-623 78-308 (313)
2 4a9c_A Phosphatidylinositol-3, 100.0 6.7E-86 2.3E-90 692.6 29.5 229 378-619 80-314 (316)
3 1i9z_A Synaptojanin, phosphati 100.0 6.4E-84 2.2E-88 685.5 33.0 324 78-629 2-328 (347)
4 2xsw_A 72 kDa inositol polypho 100.0 6.7E-78 2.3E-82 641.6 30.1 228 378-622 86-326 (357)
5 2imq_X Salivary nitrophorin; f 100.0 3.8E-63 1.3E-67 509.6 24.5 205 378-618 72-282 (282)
6 4gz1_A Tyrosyl-DNA phosphodies 98.7 9E-08 3.1E-12 91.6 12.0 66 418-496 97-162 (256)
7 3teb_A Endonuclease/exonucleas 98.5 1.1E-06 3.9E-11 85.4 12.9 62 420-497 120-181 (266)
8 4fva_A 5'-tyrosyl-DNA phosphod 98.5 8.8E-07 3E-11 84.9 11.9 68 420-497 103-170 (256)
9 4f1h_A Tyrosyl-DNA phosphodies 98.4 2.2E-06 7.4E-11 80.3 13.0 62 421-495 94-155 (250)
10 1zwx_A SMCL, sphingomyelinase- 98.4 1.3E-06 4.5E-11 87.3 11.2 70 420-498 128-201 (301)
11 4gew_A 5'-tyrosyl-DNA phosphod 98.3 3.2E-06 1.1E-10 89.5 11.9 65 422-496 211-275 (362)
12 3i41_A Beta-hemolysin; beta to 98.2 2.4E-06 8.1E-11 88.0 8.9 71 419-498 146-220 (317)
13 1ako_A Exonuclease III; AP-end 98.1 1.1E-05 3.6E-10 78.6 10.7 68 421-498 87-157 (268)
14 3l1w_A Uncharacterized protein 98.1 2.3E-05 8E-10 76.4 13.2 62 420-496 107-170 (257)
15 2ddr_A Sphingomyelin phosphodi 98.1 1.1E-05 3.8E-10 80.6 10.6 69 420-497 128-200 (306)
16 3g6s_A Putative endonuclease/e 98.0 1.2E-05 4.1E-10 79.1 9.3 61 421-496 114-176 (267)
17 3mpr_A Putative endonuclease/e 97.7 0.00011 3.9E-09 74.1 9.8 62 422-496 119-182 (298)
18 2jc4_A Exodeoxyribonuclease II 97.1 0.0011 3.8E-08 63.9 8.6 53 436-498 98-152 (256)
19 1vyb_A ORF2 contains A reverse 97.1 0.0034 1.2E-07 59.5 11.8 54 425-497 97-150 (238)
20 1wdu_A TRAS1 ORF2P; four-layer 96.6 0.0038 1.3E-07 60.8 7.9 58 422-497 102-159 (245)
21 1hd7_A DNA-(apurinic or apyrim 96.3 0.0059 2E-07 62.3 7.4 37 106-145 61-97 (318)
22 2o3h_A DNA-(apurinic or apyrim 96.3 0.006 2E-07 60.3 7.0 52 435-497 130-182 (285)
23 2jc5_A Exodeoxyribonuclease; h 96.3 0.0042 1.4E-07 59.9 5.5 37 581-617 219-257 (259)
24 4b8c_D Glucose-repressible alc 96.2 0.001 3.5E-08 76.4 1.0 73 433-510 545-618 (727)
25 2j63_A AP-endonuclease; base e 96.2 0.013 4.5E-07 64.4 9.7 35 582-616 430-466 (467)
26 2voa_A AF_EXO, XTHA, exodeoxyr 95.6 0.14 4.8E-06 49.2 13.3 51 436-496 98-150 (257)
27 3g91_A MTH0212, exodeoxyribonu 95.6 0.015 5E-07 57.1 6.0 36 107-145 4-39 (265)
28 2ei9_A Non-LTR retrotransposon 91.7 0.28 9.6E-06 48.5 6.8 36 106-145 7-42 (240)
29 2a40_B Deoxyribonuclease-1; WA 91.0 0.16 5.6E-06 49.9 4.3 61 423-498 111-174 (260)
30 4fva_A 5'-tyrosyl-DNA phosphod 90.6 0.039 1.3E-06 52.4 -0.6 40 103-145 10-53 (256)
31 4f1h_A Tyrosyl-DNA phosphodies 86.8 0.11 3.7E-06 48.1 -0.4 37 106-145 3-43 (250)
32 4gz1_A Tyrosyl-DNA phosphodies 83.7 0.23 7.7E-06 46.9 0.2 35 582-616 211-254 (256)
33 3ngq_A CCR4-NOT transcription 80.9 1.8 6.3E-05 46.5 6.0 74 434-512 194-270 (398)
34 4gew_A 5'-tyrosyl-DNA phosphod 80.9 0.32 1.1E-05 51.1 0.0 41 102-145 115-159 (362)
35 2ei9_A Non-LTR retrotransposon 77.0 0.27 9.1E-06 48.7 -1.9 57 421-497 76-132 (240)
36 1ako_A Exonuclease III; AP-end 76.7 0.25 8.6E-06 47.5 -2.1 35 107-145 1-35 (268)
37 2jc5_A Exodeoxyribonuclease; h 76.4 0.27 9.3E-06 47.1 -2.0 36 107-145 2-37 (259)
38 3g91_A MTH0212, exodeoxyribonu 74.7 0.23 7.8E-06 48.6 -3.1 35 582-616 221-257 (265)
39 1sr4_B CDT B, cytolethal diste 72.3 3.7 0.00013 42.1 5.1 59 422-494 121-179 (261)
40 1vyb_A ORF2 contains A reverse 69.9 0.49 1.7E-05 44.5 -1.9 37 106-145 7-44 (238)
41 2voa_A AF_EXO, XTHA, exodeoxyr 68.2 0.63 2.2E-05 44.6 -1.6 35 107-145 2-36 (257)
42 2o3h_A DNA-(apurinic or apyrim 66.8 0.5 1.7E-05 46.4 -2.7 37 106-145 28-64 (285)
43 1hd7_A DNA-(apurinic or apyrim 65.2 0.57 1.9E-05 47.5 -2.7 52 435-497 163-215 (318)
44 3g6s_A Putative endonuclease/e 61.7 3.6 0.00012 39.8 2.4 36 581-617 222-261 (267)
45 2jc4_A Exodeoxyribonuclease II 61.6 0.69 2.4E-05 44.1 -2.7 34 108-145 2-35 (256)
46 2j63_A AP-endonuclease; base e 60.7 0.72 2.5E-05 50.7 -3.1 37 106-145 149-188 (467)
47 3l1w_A Uncharacterized protein 58.4 1.6 5.5E-05 41.9 -0.8 34 582-617 214-252 (257)
48 3teb_A Endonuclease/exonucleas 57.8 1.8 6.2E-05 41.4 -0.5 35 580-615 226-265 (266)
49 1wdu_A TRAS1 ORF2P; four-layer 56.7 0.91 3.1E-05 43.8 -2.9 36 106-145 19-54 (245)
50 2ddr_A Sphingomyelin phosphodi 56.3 7.7 0.00026 38.1 3.8 15 602-616 291-305 (306)
51 2f1n_A CDT B, cytolethal diste 53.6 3 0.0001 42.8 0.3 61 422-497 130-190 (262)
52 3mpr_A Putative endonuclease/e 51.1 2.1 7.2E-05 42.7 -1.4 39 104-145 4-52 (298)
53 1sr4_B CDT B, cytolethal diste 50.9 5.2 0.00018 41.0 1.5 38 108-148 6-48 (261)
54 2f1n_A CDT B, cytolethal diste 45.6 19 0.00067 36.9 4.8 38 106-145 15-56 (262)
55 1zwx_A SMCL, sphingomyelinase- 44.8 10 0.00034 37.2 2.5 15 602-616 286-300 (301)
56 3i41_A Beta-hemolysin; beta to 32.9 5.6 0.00019 40.3 -1.6 37 106-145 29-74 (317)
No 1
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=100.00 E-value=6.6e-91 Score=729.52 Aligned_cols=229 Identities=41% Similarity=0.751 Sum_probs=216.7
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHh
Q 006069 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (662)
Q Consensus 378 ~Yv~v~S~qmVGi~L~VfVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN 457 (662)
.|++|+|+|||||+|+||||++++++|++|++++||||+||++||||||+|||.+++|+|||||||||||++ +.++||
T Consensus 78 ~Y~~v~s~~lvGl~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~cFVnsHLaA~~~--~~~~Rn 155 (313)
T 3mtc_A 78 KYAKVKLIRLVGIMLLLYVKQEHAAYISEVEAETVGTGIMGRMGNKGGVAIRFQFHNTSICVVNSHLAAHIE--EYERRN 155 (313)
T ss_dssp CEEEEEEEEETTEEEEEEEEGGGGGGEEEEEEEEEECSGGGTSTTSEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHH
T ss_pred CEEEEEEechhhhhhhhhhhhhhhhhcceeEeeeecccccccccCCceEEEEEEECCcEEEEEeeccCCCch--HHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999999999999999986 478999
Q ss_pred hhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc-CChHHHHHHHHhhhHHHHhhcChhhhhhccchhhHHHH
Q 006069 458 SDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN-MMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKEL 536 (662)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~-l~~~~v~~lI~~~~~~~LL~~DQ~~~~~~l~~~L~~e~ 536 (662)
+|+.+|++++.|........|.+|.+||+|||||||||||+ ++.++++++|++++|+.||++|| |++++
T Consensus 156 ~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~~~~~~~v~~~i~~~~~~~Ll~~DQ----------L~~~~ 225 (313)
T 3mtc_A 156 QDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIEELDVEKVKKLIEEKDFQMLYAYDQ----------LKIQV 225 (313)
T ss_dssp HHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBCSSCHHHHHHHHHTTCHHHHHTTBH----------HHHHH
T ss_pred HHHHHHHHhcccCCCCCccCCccccCCceEEEeccccccccCCCHHHHHHHHhcCCHHHHHHhHH----------HHHHH
Confidence 99999999999975433345678999999999999999996 88999999999999999999999 99999
Q ss_pred hcCCCccCccccCcccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecCceeEEeeccC-CCCCCCCcCceeEEE
Q 006069 537 HSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRA-EILLSDHRPVSSTFL 615 (662)
Q Consensus 537 ~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Yd~~~~k~s~KkR~PSWCDRIL~~g~~i~~l~Y~s~-e~~~SDHrPV~A~F~ 615 (662)
++|++|.||+||+|+|||||||+.|++.|++ ++|+|+|||||||||++++++++.|.+. ++++||||||+|.|.
T Consensus 226 ~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydt-----s~k~R~PsWcDRIL~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~ 300 (313)
T 3mtc_A 226 AAKTVFEGFTEGELTFQPTYKYDTGSDDWDT-----SEKCRAPAWCDRILWKGKNITQLSYQSHMALKTSDHKPVSSVFD 300 (313)
T ss_dssp HTTSSCTTCBCCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSEEEEEEEECTTCCSSSSCCEEEEEE
T ss_pred HcCCccCCcccCCcCcCCCccCcCCCccccc-----ccCEecccccceEEEecCCeEEEeeeeccCccCCCccCeEEEEE
Confidence 9999999999999999999999999999985 7899999999999999999999999995 799999999999999
Q ss_pred EEEEeeCH
Q 006069 616 VQVEVLDH 623 (662)
Q Consensus 616 v~V~vi~~ 623 (662)
+++.|+.+
T Consensus 301 ~~~~~~~~ 308 (313)
T 3mtc_A 301 IGVRVVAH 308 (313)
T ss_dssp EEEEEECC
T ss_pred EEEEEeec
Confidence 99999854
No 2
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=100.00 E-value=6.7e-86 Score=692.60 Aligned_cols=229 Identities=35% Similarity=0.583 Sum_probs=196.9
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHh
Q 006069 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (662)
Q Consensus 378 ~Yv~v~S~qmVGi~L~VfVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN 457 (662)
.|++|+++|||||+|+||||+++.++|++|++++||||+||++||||||+|+|.+++|+|||||||||||+++ +++||
T Consensus 80 ~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~ts~~FVn~HLaAg~~~--~~~Rn 157 (316)
T 4a9c_A 80 DYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEK--TARRN 157 (316)
T ss_dssp CCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred CEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCCceEEEEEEECCcEEEEEEeccccCchH--HHHHH
Confidence 6889999999999999999999999999999999999999999999999999999999999999999999874 78999
Q ss_pred hhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccccCChHHHHHHHHhhhHHHHhhcChhhhhhccchhhHHHHh
Q 006069 458 SDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKELH 537 (662)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQ~~~~~~l~~~L~~e~~ 537 (662)
+|+.+|++++.|.... ......+.+||||||||||||||+++.++++++|++++|..||++|| |++|++
T Consensus 158 ~d~~~I~~~l~f~~~~-~~~~d~~~~~d~vfw~GDLNyRi~~~~~~v~~~i~~~~~~~Ll~~DQ----------L~~e~~ 226 (316)
T 4a9c_A 158 QNYLDILRLLSLGDRQ-LNAFDISLRFTHLFWFGDLNYRLDMDIQEILNYISRKEFEPLLRVDQ----------LNLERE 226 (316)
T ss_dssp HHHHHHHHHCCC--------CCTTTTSSEEEEEEECCCCBSSCHHHHHHHHHTTCCHHHHTTBH----------HHHHHH
T ss_pred HHHHHHHHhCCCCCCC-cCccccCCcCCeEEEcCCccCCcCCCHHHHHHHHhcccHHHHhccCh----------HHHHHh
Confidence 9999999999986321 11122346799999999999999999999999999999999999999 999999
Q ss_pred cCCCccCccccCcccCCCCCcccCCc-cCCCCCCC-CCCcccCCCcccceeeecC---ceeEEeecc-CCCCCCCCcCce
Q 006069 538 SGHVFEGWKEGVINFPPTYKYEINSD-RYVGENPK-EGEKKRSPAWCDRILWLGK---GIKQLAYTR-AEILLSDHRPVS 611 (662)
Q Consensus 538 ~g~vF~gf~Eg~I~FpPTYKy~~~Sd-~Yd~~~~k-~s~KkR~PSWCDRIL~~g~---~i~~l~Y~s-~e~~~SDHrPV~ 611 (662)
+|++|.||+||+|+|||||||+.|++ .|+++..+ +++|+|+|||||||||++. .++++.|.+ .++++||||||+
T Consensus 227 ~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~ 306 (316)
T 4a9c_A 227 KHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWKSYPETHIICNSYGCTDDIVTSDHSPVF 306 (316)
T ss_dssp TTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEEECTTCCEEEEEEEECSSCCSSSSCCEE
T ss_pred cCCcccccccCCcccCCCccccCCCcccccccccccccccccCCcccceEEeccCCCCceEEeeecccCCcCCCCcccEE
Confidence 99999999999999999999999995 67765433 5778999999999999975 588999998 589999999999
Q ss_pred eEEEEEEE
Q 006069 612 STFLVQVE 619 (662)
Q Consensus 612 A~F~v~V~ 619 (662)
|.|.++|.
T Consensus 307 a~f~v~V~ 314 (316)
T 4a9c_A 307 GTFEVGVT 314 (316)
T ss_dssp EEEEEECC
T ss_pred EEEEEEEE
Confidence 99999874
No 3
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=100.00 E-value=6.4e-84 Score=685.50 Aligned_cols=324 Identities=34% Similarity=0.623 Sum_probs=287.7
Q ss_pred CCCchhhH-hhhcccccccccccceeeeEEEEEeeeeCCCCCCCCCCCcccccCCC--CCCCEEEEeeeeeeeCCCCCcc
Q 006069 78 TPSKGYHL-RHRRGKSETLRVQYINTKDVRVTIGTWNVAGRQPYEDLDIDDWLCTQ--EPADIYIFGFQEVVPLNAGNVL 154 (662)
Q Consensus 78 ~~~~~~~~-~~rr~~~e~~r~~y~~~~~~rifvgTwNV~G~~p~~~ldl~~WL~~~--~~~DIYvlGfQEiV~Lna~nvl 154 (662)
||+++++. +|++|..| |+..++++||||||||||+.| +.||.+||.+. .+||||||||||||+|++++++
T Consensus 2 ~p~~~~~~~~l~~r~~e-----~~~~~~~~i~v~TwNv~g~~~--~~~l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~ 74 (347)
T 1i9z_A 2 DPIHEYVNHELRKRENE-----FSEHKNVKIFVASYNLNGCSA--TTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVI 74 (347)
T ss_dssp CHHHHHHHHHHHHTGGG-----TEEEEEEEEEEEEEECTTCCC--CSCCHHHHSCSSSCCCSEEEEEEECSSCCC-----
T ss_pred CchHHHHHHHHHHHHHh-----cCCCCCcEEEEEeEecCCCCC--chhHHHHhccccCCCCCEEEEEeEEeecCchhhhc
Confidence 68888887 78888665 999999999999999999888 45699999873 6899999999999999999999
Q ss_pred ccCCCCChhHHHHHHHHHhcCCCCCCccccccCCCCCCCcCCCchhhhhhhhhhcccCCCccCcccccccccccCCCCCc
Q 006069 155 GAESSRPIPKWEAIIRRTLNKSAEPENKYKSYSAPPSPVLRTSSVADELADELADEIDDLPLGITSEEYASITNGCNVGR 234 (662)
Q Consensus 155 ~~ed~~~~~~W~~~I~~~Ln~~~~~~~~~~~~s~ppsp~~~~~s~~~~~~~~~~~e~d~~~~~~~~~~~~~~~~~~~~~~ 234 (662)
+. |+.+...|+.+|+++|+....
T Consensus 75 ~~-~~~~~~~w~~~i~~~L~~~~~-------------------------------------------------------- 97 (347)
T 1i9z_A 75 SA-DPAKRREWESCVKRLLNGKCT-------------------------------------------------------- 97 (347)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHTCC--------------------------------------------------------
T ss_pred cc-CchhHHHHHHHHHHHHhhccc--------------------------------------------------------
Confidence 65 556688999999999874210
Q ss_pred ccchhhhhcccccccccccccccCCCCCCCCCCCCCCchhhchhhhhhhhccccccccccccCCCCCCCcccccccCCCc
Q 006069 235 EDLKKVISIGKNLHLSRIYGVDYDRRLDWPEHSFDATPQVISSNLKLRRVFSSSARIGFTLVDNPPMLSPQHFAINGNGL 314 (662)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~r~~s~~~r~~~~~~~~p~~~~~~~~~~~~~~~ 314 (662)
T Consensus 98 -------------------------------------------------------------------------------- 97 (347)
T 1i9z_A 98 -------------------------------------------------------------------------------- 97 (347)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccCccccchhhccCCcccccccccCCCCCCcccccccCCCchhhhchHHHHhhccCCCCEEEEEeeeceeEEEEE
Q 006069 315 KRSHHSYGNLVSTWMEQQEEPEVVESVSDVSDGFSDEEFDAFSETPKEKHNDAAIRDTAKSRPKYVRIVSKQMVGIYVSI 394 (662)
Q Consensus 315 ~~~~~s~~~~~~~~~~~~~~~~~~~s~~~~~~~~s~~e~~~~~~~~~~~~~~~~~~~~~~~~~~Yv~v~S~qmVGi~L~V 394 (662)
.+..|+++.++||+|++|+|
T Consensus 98 ------------------------------------------------------------~~~~Y~~v~s~~l~g~~L~V 117 (347)
T 1i9z_A 98 ------------------------------------------------------------SGPGYVQLRSGQLVGTALMI 117 (347)
T ss_dssp ------------------------------------------------------------SSCCEEEEEEEEETTEEEEE
T ss_pred ------------------------------------------------------------CCCceeEEEEeeccceEEEE
Confidence 02379999999999999999
Q ss_pred EEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCC
Q 006069 395 WVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFD 474 (662)
Q Consensus 395 fVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~ 474 (662)
|||.+++++|++|++++|+||++|++||||+|+|+|.+++++||||||||+||+.+ ..+||+|+.+|++++.|..
T Consensus 118 fvr~~~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~~~l~fvn~HLaa~~~~--~~~R~~d~~~I~~~l~f~~--- 192 (347)
T 1i9z_A 118 FCKESCLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYEDTGLCFITSHLAAGYTN--YDERDHDYRTIASGLRFRR--- 192 (347)
T ss_dssp EEEGGGGGGEEEEEEEEEECCCC----CCEEEEEEEEETTEEEEEEEEECCCCSSC--HHHHHHHHHHHHHHCCCGG---
T ss_pred EEehHhhhhccceeeeeEeccCCCccCCCceEEEEEEECCeEEEEEEecCCCCCcc--HHHHHHHHHHHHHhhccCc---
Confidence 99999999999999999999999999999999999999999999999999999865 5679999999999999864
Q ss_pred CCCCCCCCCcceEEEeCccCccccCChHHHHHHHHhhhHHHHhhcChhhhhhccchhhHHHHhcCCCccCccccCcccCC
Q 006069 475 TDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKELHSGHVFEGWKEGVINFPP 554 (662)
Q Consensus 475 ~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQ~~~~~~l~~~L~~e~~~g~vF~gf~Eg~I~FpP 554 (662)
+..|.+||++||||||||||+++.+.++++|++++|..||++|| |.+++++|++|.||.|++|+|+|
T Consensus 193 ---~~~i~~~d~v~~~GDlNyRi~~~~~~v~~~i~~~~~~~Ll~~Dq----------L~~~~~~~~~f~~f~E~~i~F~P 259 (347)
T 1i9z_A 193 ---GRSIFNHDYVVWFGDFNYRISLTYEEVVPCIAQGKLSYLFEYDQ----------LNKQMLTGKVFPFFSELPITFPP 259 (347)
T ss_dssp ---GCCTTSSSEEEEEEECCCCBSSCHHHHHHHHHTTCHHHHHTTBH----------HHHHHHTTSSSTTCBCCCCCSCC
T ss_pred ---ccccccCccEEEecccccccCCCHHHHHHHHhhccHHHhhcccH----------HHHHHhcCCcccccccCCCCCCC
Confidence 24588999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred CCCcccCCccCCCCCCCCCCcccCCCcccceeeecCceeEEeeccCCCCCCCCcCceeEEEEEEEeeCHHHHhhh
Q 006069 555 TYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGKGIKQLAYTRAEILLSDHRPVSSTFLVQVEVLDHRKLKRA 629 (662)
Q Consensus 555 TYKy~~~Sd~Yd~~~~k~s~KkR~PSWCDRIL~~g~~i~~l~Y~s~e~~~SDHrPV~A~F~v~V~vi~~~klq~~ 629 (662)
||||+.+++.|++ ++|+|+|||||||||++ +++++.|.+.++++||||||+|.|.+.|+++++++.+++
T Consensus 260 TYK~~~~~~~yd~-----s~k~R~PsWcDRIL~~~-~l~~~~Y~~~~~~~SDH~PV~a~f~~~v~~~~~~~~~~~ 328 (347)
T 1i9z_A 260 TYKFDIGTDIYDT-----SDKHRVPAWTDRILYRG-ELVPHSYQSVPLYYSDHRPIYATYEANIVKVDREKKKIL 328 (347)
T ss_dssp CBCBCTTSSCBCC-----STTCCCCBCCEEEEEES-SCEEEEEEECCCCSSSBCCEEEEEEEEEEEECHHHHHHH
T ss_pred CcccCCCCccccc-----cccccCCcccceEEEeC-CEEEEEEEecCccCCCcCCceeEEEEEEecCCHHHHHHH
Confidence 9999999999985 78999999999999998 899999999889999999999999999999999887654
No 4
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=100.00 E-value=6.7e-78 Score=641.64 Aligned_cols=228 Identities=30% Similarity=0.537 Sum_probs=207.9
Q ss_pred CEEEEEeeeceeEEEEEEEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHh
Q 006069 378 KYVRIVSKQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRN 457 (662)
Q Consensus 378 ~Yv~v~S~qmVGi~L~VfVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN 457 (662)
.|+++.+.+|+|++|+||||++++++|++|++++|+||+||++||||+|+|+|.+++|+||||||||+||+++ ..+||
T Consensus 86 ~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNKGav~vr~~~~~t~~~Fvn~HLaa~~~~--~~~Rn 163 (357)
T 2xsw_A 86 HYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTKGALGISFTFFGTSFLFITSHFTSGDGK--VAERL 163 (357)
T ss_dssp TEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEEEEEECCCSTTC--HHHHH
T ss_pred cccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccccEEEEEEEECCeEEEEEEEccCCCCch--HHHHH
Confidence 5888999999999999999999999999999999999999999999999999999999999999999999864 68999
Q ss_pred hhHHHHHhhcccCCCCCCC------CCCCCCCcceEEEeCccCccccCChHHHHHHHH---hhhHHHHhhcChhhhhhcc
Q 006069 458 SDVSEIRRRTRFSSVFDTD------QPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVA---QKRWDKLINSDQMIYQNCL 528 (662)
Q Consensus 458 ~D~~eIlrr~~F~~~~~~~------~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~---~~~~~~LL~~DQ~~~~~~l 528 (662)
+|+.+|++++.|+...... ....+.+||+|||||||||||++++++++++|+ .++|+.|+++||
T Consensus 164 ~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~~~~~~v~~~i~~~~~~~~~~Ll~~DQ------- 236 (357)
T 2xsw_A 164 LDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLSGGRTVVDALLCQGLVVDVPALLQHDQ------- 236 (357)
T ss_dssp HHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBSSCHHHHHHHHC---CCCHHHHHTTBH-------
T ss_pred HHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccccchHHHHHHHhhcchhhHHHHHhcCh-------
Confidence 9999999999996432111 112345799999999999999999999999996 478999999999
Q ss_pred chhhHHHHhcCCCccCccccCcccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeecC---ceeEEeecc-CCCCC
Q 006069 529 SFHLSKELHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLGK---GIKQLAYTR-AEILL 604 (662)
Q Consensus 529 ~~~L~~e~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Yd~~~~k~s~KkR~PSWCDRIL~~g~---~i~~l~Y~s-~e~~~ 604 (662)
|+.++++|++|.||+|++|+|||||||+.|++.|++ ++|+|+|||||||||++. +++++.|.+ .++++
T Consensus 237 ---L~~~~~~g~~F~gf~E~~I~F~PTYKy~~~t~~Ydt-----s~k~R~PaWcDRIL~~~~~~~~i~~~~Y~s~~~~~~ 308 (357)
T 2xsw_A 237 ---LIREMRKGSIFKGFQEPDIHFLPSYKFDIGKDTYDS-----TSKQRTPSYTDRVLYRSRHKGDICPVSYSSCPGIKT 308 (357)
T ss_dssp ---HHHHHHHTSSSTTCBCCCCCSCCCBCBCTTSSSBCC-----STTCCCCBCCEEEEEEESSTTSEEEEEEEECTTCCS
T ss_pred ---hHHHHhccccccCccccCCCCCCCccccCCCccccc-----cCCCCCCcccceEEEecCCCCceEEEEeEecccccC
Confidence 999999999999999999999999999999999985 789999999999999964 699999999 58999
Q ss_pred CCCcCceeEEEEEEEeeC
Q 006069 605 SDHRPVSSTFLVQVEVLD 622 (662)
Q Consensus 605 SDHrPV~A~F~v~V~vi~ 622 (662)
||||||+|.|.+.|+...
T Consensus 309 SDHrPV~a~f~v~v~~~~ 326 (357)
T 2xsw_A 309 SDHRPVYGLFRVKVRPGR 326 (357)
T ss_dssp SSSCCEEEEEEEECCCCC
T ss_pred CCcCCceeEEEEEEecCC
Confidence 999999999999987654
No 5
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=100.00 E-value=3.8e-63 Score=509.56 Aligned_cols=205 Identities=26% Similarity=0.490 Sum_probs=185.3
Q ss_pred CEEEEEe--eeceeEEEEEEEeccccccccceeEeEEeecccccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHH
Q 006069 378 KYVRIVS--KQMVGIYVSIWVRKRLRRHINNLKVSPVGVGLMGYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQR 455 (662)
Q Consensus 378 ~Yv~v~S--~qmVGi~L~VfVr~~l~~~I~~v~vs~V~tGl~G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~r 455 (662)
.|+++.+ .+|+|++|+||+|.++.+.|+++.+ +|++|.+||||+|+++|.+++++||||||||+|++.+ ..+
T Consensus 72 ~Y~~v~~~~~~~~G~~l~vf~k~~~~~~i~~~~~----~~~~g~~g~kGav~~r~~~~~~~~~fvn~HL~~~~~~--~~~ 145 (282)
T 2imq_X 72 GYTKLKNTITETMGLTVYCLEKHLDQNTLKNETI----IVTVDDQKKSGGIVTSFTIYNKRFSFTTSRMSDEDVT--STN 145 (282)
T ss_dssp TEEEEEEEECSSEEEEEEEEGGGCCTTTCCCEEE----EEECSTTSCSEEEEEEEEETTEEEEEEEEECCTTCCC--TTS
T ss_pred ceEEEEeccCceeEEEEEEEEccccCccceeeee----ccccccccCCceEEEEEEECCEEEEEEEECCCCCCch--HHH
Confidence 4556666 7899999999999999999888765 5778899999999999999999999999999999643 467
Q ss_pred HhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccccCChHHHHHHHHhhhHHHHhhcChhhhhhccchhhHHH
Q 006069 456 RNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQKRWDKLINSDQMIYQNCLSFHLSKE 535 (662)
Q Consensus 456 RN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~~~~~~LL~~DQ~~~~~~l~~~L~~e 535 (662)
||+++..|++++.+ +.++++|||+||||||++.+.++++++|++++|..|+++|| |..+
T Consensus 146 R~~~~~~I~~~~~~-----------~~~~~~vi~~GDfN~r~~~~~~~~~~~i~~~~~~~l~~~Dq----------L~~~ 204 (282)
T 2imq_X 146 TKYAYDTRLDYSKK-----------DDPSDFLFWIGDLNVRVETNATHAKSLVDQNNIDGLMAFDQ----------LKKA 204 (282)
T ss_dssp SSSSCCGGGCTTSS-----------SSCCSEEEEEEECSCCBCSCHHHHHHHHHTTCHHHHHTTBT----------HHHH
T ss_pred HHHHHHHHHHhhhc-----------cCccceEEEecccccccCCCHHHHHHHHhhccHHHHhhhhH----------HHHh
Confidence 99999999876543 45689999999999999999999999999999999999999 9999
Q ss_pred HhcCCCccCccccCcccCCCCCcccCCccCCCCCCCCCCcccCCCcccceeeec---CceeEEeeccC-CCCCCCCcCce
Q 006069 536 LHSGHVFEGWKEGVINFPPTYKYEINSDRYVGENPKEGEKKRSPAWCDRILWLG---KGIKQLAYTRA-EILLSDHRPVS 611 (662)
Q Consensus 536 ~~~g~vF~gf~Eg~I~FpPTYKy~~~Sd~Yd~~~~k~s~KkR~PSWCDRIL~~g---~~i~~l~Y~s~-e~~~SDHrPV~ 611 (662)
++ |.+|.||.|++|+|+|||||+.+++.|++ +|+|||||||||++ ..++++.|.+. ++.+|||+||+
T Consensus 205 ~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~~--------~R~Psw~DrIl~~~~~~~~~~~~~y~~~~~~~~SDH~PV~ 275 (282)
T 2imq_X 205 KE-QKLFDGWTEPQVTFKPTYKFKPNTDEYDL--------SATPSWTDRALYKSGTGKTIQPLSYNSLTNYKQTEHRPVL 275 (282)
T ss_dssp HH-TTSSTTCBCCCCCSCCCBCBCTTSSCBCT--------TSCCBCCEEEEEECSSSCCEEEEEEEECTTCCSSSSCCEE
T ss_pred hc-cccccccccCCcCCCCCccccCCCccccc--------cCCccccceEEEecCCCCceEeeEecCCCCCCCCCcCCeE
Confidence 99 99999999999999999999999999985 79999999999996 47999999997 79999999999
Q ss_pred eEEEEEE
Q 006069 612 STFLVQV 618 (662)
Q Consensus 612 A~F~v~V 618 (662)
|.|.+++
T Consensus 276 a~f~~~~ 282 (282)
T 2imq_X 276 AKFRVTL 282 (282)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9998764
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=98.70 E-value=9e-08 Score=91.59 Aligned_cols=66 Identities=21% Similarity=0.360 Sum_probs=48.6
Q ss_pred ccccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006069 418 GYMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (662)
Q Consensus 418 G~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (662)
+....++.+.+.+.+.+..|+++|+||.++... ...|...+.+|++.+.= ......+|++||||..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~~ 162 (256)
T 4gz1_A 97 NTKMMRNLLCVNVSLGGNEFCLMTSHLESTREH--SAERIRQLKTVLGKMQE-----------APDSTTVIFAGDTNLR 162 (256)
T ss_dssp TCSSCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH-----------SCTTSEEEEEEECCCC
T ss_pred cccccceEEEEEEEeCCEEEEEEeecccccccc--hhhhhHHHHHHhhhhhh-----------ccCcceEEEeCccCCC
Confidence 445567889999999999999999999987643 44566777777765421 1123479999999964
No 7
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=98.47 E-value=1.1e-06 Score=85.43 Aligned_cols=62 Identities=15% Similarity=0.265 Sum_probs=48.3
Q ss_pred ccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 420 lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
...+|.+.+.+.+.+..|+++|+||.+.... ...|..++..|++.+. ....+|++||||-.-
T Consensus 120 ~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~--~~~r~~q~~~l~~~~~--------------~~~~~il~GDfN~~~ 181 (266)
T 3teb_A 120 ISARRIVSITINYEGQDIEFYSCHMNLPNCE--TEDMGKNIQTILNRTQ--------------NSNLKILMGDFNTDA 181 (266)
T ss_dssp TTCCEEEEEEEEETTEEEEEEEEECCCTTCT--TCCHHHHHHHHHTSSC--------------SCCEEEEEEECCCCT
T ss_pred cccceEEEEEEEeCCeEEEEEEecCCCccCC--hHHHHHHHHHHHHHHh--------------cCCcEEEEeECCCCC
Confidence 4568999999999999999999999987432 2347778888876432 146899999999875
No 8
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=98.47 E-value=8.8e-07 Score=84.91 Aligned_cols=68 Identities=18% Similarity=0.141 Sum_probs=44.9
Q ss_pred ccCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 420 lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
.+..+.+.+.+.+.+..|.++|+||.+.... ...|...+..++..+..... ......+|++||||.+-
T Consensus 103 ~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~--~~~~~~q~~~~~~~~~~~~~--------~~~~~~vIl~GDfN~~~ 170 (256)
T 4fva_A 103 GMYRTLQILEGSIGGLKVFLLNTHLESTREH--RPQRCAQFGFCMDKVREIIA--------QNPGALVFFGGDLNLRD 170 (256)
T ss_dssp SSCCEEEEEEEEETTEEEEEEEEECCCSGGG--HHHHHHHHHHHHHHHHHHHH--------HSTTCEEEEEEECCCCG
T ss_pred cccceeEEEEEEeCCeEEEEEEecCCCCCcc--hHHHHHHHHHHHHHhhhhhh--------ccCCCcEEEeccCCCCc
Confidence 3467888899999999999999999987543 34455555555443211000 01234799999999653
No 9
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=98.42 E-value=2.2e-06 Score=80.34 Aligned_cols=62 Identities=21% Similarity=0.334 Sum_probs=45.5
Q ss_pred cCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006069 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (662)
Q Consensus 421 GNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (662)
...+.+.+.+.+.+..|.++++||.+.... ...|...+.+|++.+.= ......+|++||||-
T Consensus 94 ~~~~~~~~~~~~~~~~~~v~~~hl~~~~~~--~~~r~~q~~~~~~~l~~-----------~~~~~pvIl~GDfN~ 155 (250)
T 4f1h_A 94 MMRNLLIAQVTFSGQKLYLMTSHLESCKNQ--SQERTKQLRVVLQKIKE-----------APEDAIVIFAGDTNL 155 (250)
T ss_dssp SCCEEEEEEEEETTEEEEEEECBCCCSGGG--HHHHHHHHHHHHHHHHH-----------SCTTEEEEEEEECCC
T ss_pred ccceEEEEEEecCCcEEEEecccccccccc--HHHHHHHHHHHHHHHHh-----------cCCCCCEEEEEecCC
Confidence 346678888889999999999999987543 45677777777765421 112347999999995
No 10
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=98.39 E-value=1.3e-06 Score=87.32 Aligned_cols=70 Identities=23% Similarity=0.279 Sum_probs=50.4
Q ss_pred ccCceeEEEEEEEcCeEEEeeccccCCCCCc----hhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006069 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (662)
Q Consensus 420 lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~----~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (662)
..++|++.+.+.+.+..|+++|+||.++... .....|...+..|.+.+.= . .+.....+|++||||-
T Consensus 128 ~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~--~-------~~~~~~pvIl~GDfN~ 198 (301)
T 1zwx_A 128 LSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAK--K-------NIPKDEIIFIGGDLNV 198 (301)
T ss_dssp GBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHH--H-------TCCTTSEEEEEEECCC
T ss_pred ccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHH--h-------CCCCCCeEEEEeeCCC
Confidence 4578999999999999999999999987432 1345677777777654320 0 0112357999999998
Q ss_pred ccc
Q 006069 496 RLN 498 (662)
Q Consensus 496 RI~ 498 (662)
.-.
T Consensus 199 ~~~ 201 (301)
T 1zwx_A 199 NYG 201 (301)
T ss_dssp CTT
T ss_pred CCC
Confidence 765
No 11
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=98.29 E-value=3.2e-06 Score=89.47 Aligned_cols=65 Identities=18% Similarity=0.197 Sum_probs=45.1
Q ss_pred CceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006069 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (662)
Q Consensus 422 NKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (662)
..+++.+.+.+.+..|+++|+||.++.. ...+|...+..++..+.-... ......||++||||-+
T Consensus 211 ~r~~l~~~i~~~g~~l~v~ntHL~s~~~--~~~~R~~Q~~~l~~~~~~~~~--------~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 211 YRTLQILEGSIGGLKVFLLNTHLESTRE--HRPQRCAQFGFCMDKVREIIA--------QNPGALVFFGGDLNLR 275 (362)
T ss_dssp CCEEEEEEEEETTEEEEEEEEECCCSGG--GHHHHHHHHHHHHHHHHHHHH--------HCTTCEEEEEEECCCC
T ss_pred cceEEEEEEEECCEEEEEEEecCCcccc--chhHHHHHHHHHHHHhHhhhh--------cCCCCCeEEeecCCCC
Confidence 4678888999999999999999998753 345677777666653221000 0122479999999964
No 12
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=98.22 E-value=2.4e-06 Score=87.95 Aligned_cols=71 Identities=21% Similarity=0.275 Sum_probs=52.0
Q ss_pred cccCceeEEEEEEEcCeEEEeeccccCCCCCc----hhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccC
Q 006069 419 YMGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (662)
Q Consensus 419 ~lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~----~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (662)
...+||.+.+.+.+.+..|.++|+||.+.... .....|...+..|.+.+.=. .+.....||++||||
T Consensus 146 ~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~---------~~~~~~pvIl~GDfN 216 (317)
T 3i41_A 146 NDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKK---------NIPKDETVYIGGDLN 216 (317)
T ss_dssp GGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHH---------TCCTTSCEEEEEECC
T ss_pred cccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHh---------ccCCCCeEEEEeECC
Confidence 36789999999999999999999999986521 24677888888777643210 011235799999999
Q ss_pred cccc
Q 006069 495 YRLN 498 (662)
Q Consensus 495 YRI~ 498 (662)
-.-.
T Consensus 217 ~~~~ 220 (317)
T 3i41_A 217 VNKG 220 (317)
T ss_dssp CCTT
T ss_pred CCCC
Confidence 7763
No 13
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=98.12 E-value=1.1e-05 Score=78.63 Aligned_cols=68 Identities=6% Similarity=0.164 Sum_probs=45.9
Q ss_pred cCceeEEEEEEEcCeEEEeeccccCCCCCch---hHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDG---AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 421 GNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~---~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
.+++.+.+.+.+.+..|+++|+||.++.... ....|...+.+|...+.- . ......+|++||||-..
T Consensus 87 ~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~Il~GDFN~~~ 156 (268)
T 1ako_A 87 AQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLET--E--------LKRDNPVLIMGDMNISP 156 (268)
T ss_dssp HHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHH--H--------CCTTSCEEEEEECCCCC
T ss_pred cCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHH--h--------hhCCCCEEEEeECCCCC
Confidence 4678899999998899999999999876321 223455655555543220 0 01235799999999754
Q ss_pred c
Q 006069 498 N 498 (662)
Q Consensus 498 ~ 498 (662)
+
T Consensus 157 ~ 157 (268)
T 1ako_A 157 T 157 (268)
T ss_dssp S
T ss_pred c
Confidence 4
No 14
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=98.12 E-value=2.3e-05 Score=76.40 Aligned_cols=62 Identities=13% Similarity=0.074 Sum_probs=44.5
Q ss_pred ccCceeEEEEEEEc--CeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006069 420 MGNKGSVSVSMTLF--QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (662)
Q Consensus 420 lGNKGaVsVr~~i~--~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (662)
...++++.+.+... +..|.++|+||.+.. ...|...+..|+..+.= . +.. +.+|++||||-.
T Consensus 107 ~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~r~~q~~~l~~~i~~-~---------~~~-~pvil~GDfN~~ 170 (257)
T 3l1w_A 107 GCPRIALWGLFKETTQNTPFLVINVHLDHIS----AHARLAGMTVILEELHD-K---------IAQ-YPTLLMGDFNAE 170 (257)
T ss_dssp SSCCEEEEEEEEETTCSSCEEEEEEECCSSC----HHHHHHHHHHHHHHTHH-H---------HHH-SCEEEEEECCCC
T ss_pred cccceeEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-H---------cCC-CCEEEEeeCCCC
Confidence 45788888998884 679999999998863 35677888888765430 0 001 269999999963
No 15
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=98.10 E-value=1.1e-05 Score=80.59 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=48.1
Q ss_pred ccCceeEEEEEEEcCeEEEeeccccCCCCCc----hhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCc
Q 006069 420 MGNKGSVSVSMTLFQSRLCLVCSHLTSGQKD----GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNY 495 (662)
Q Consensus 420 lGNKGaVsVr~~i~~TsfcFVn~HLaAg~~~----~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNY 495 (662)
..++|++.+.+.+.+..|.++|+||.+.... .....|...+.+|.+.+.=. .+.....+|++||||-
T Consensus 128 ~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~---------~~~~~~pvil~GDfN~ 198 (306)
T 2ddr_A 128 LSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNK---------NIPNNEYVLIGGDMNV 198 (306)
T ss_dssp CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHH---------TCCTTSCEEEEEECCC
T ss_pred hcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHh---------cCCCCCEEEEEeeCCC
Confidence 3578999999999999999999999987421 13456777777776543200 0112347999999998
Q ss_pred cc
Q 006069 496 RL 497 (662)
Q Consensus 496 RI 497 (662)
.-
T Consensus 199 ~~ 200 (306)
T 2ddr_A 199 NK 200 (306)
T ss_dssp CC
T ss_pred Cc
Confidence 76
No 16
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=98.04 E-value=1.2e-05 Score=79.05 Aligned_cols=61 Identities=16% Similarity=0.091 Sum_probs=42.5
Q ss_pred cCceeEEEEEEE--cCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006069 421 GNKGSVSVSMTL--FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (662)
Q Consensus 421 GNKGaVsVr~~i--~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (662)
.+++++.+.+.. .+..|+++|+||.+.. ...|...+..|++.+.= +.....+|++||||-.
T Consensus 114 ~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~l~~-----------~~~~~pvIl~GDfN~~ 176 (267)
T 3g6s_A 114 CVRIATWAKFKDKATGKIFMAVNTHFDHVG----EEARRQSALLIIRKIKE-----------IVGERPAVVTGDFNVT 176 (267)
T ss_dssp SCCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH-----------HTTTSCEEEEEECSSC
T ss_pred CcceEEEEEEEEcCCCCEEEEEEeCCCCCC----HHHHHHHHHHHHHHHHH-----------hcCCCCEEEEeECCCC
Confidence 467888888885 5789999999998753 35666666666654320 0012469999999963
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=97.69 E-value=0.00011 Score=74.12 Aligned_cols=62 Identities=8% Similarity=-0.030 Sum_probs=41.2
Q ss_pred CceeEEEEEE--EcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006069 422 NKGSVSVSMT--LFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (662)
Q Consensus 422 NKGaVsVr~~--i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (662)
+++++.+.|. ..+..|+++|+||.+.. ...|...+..|++.+.= ... .....+|++||||-.
T Consensus 119 ~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~----~~~R~~q~~~l~~~i~~--~~~-------~~~~pvIl~GDfN~~ 182 (298)
T 3mpr_A 119 PRICSWGHFKCKDTGFEFLFFNLHMDHIG----KKARVESAFLVQEKMKE--LGR-------GKNLPAILTGDFNVD 182 (298)
T ss_dssp CCEEEEEEEEETTTCCEEEEEEEECCSSC----HHHHHHHHHHHHHHHHH--TTT-------TSCCCEEEEEECSSC
T ss_pred CceeEEEEEEEcCCCCEEEEEEecCCCCC----HHHHHHHHHHHHHHHHH--Hhc-------CCCCcEEEEEeCCCC
Confidence 5677777777 35779999999998642 35677777777654321 000 012469999999954
No 18
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=97.14 E-value=0.0011 Score=63.85 Aligned_cols=53 Identities=11% Similarity=0.144 Sum_probs=31.1
Q ss_pred EEEeeccccCCCCCch--hHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc
Q 006069 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (662)
Q Consensus 436 sfcFVn~HLaAg~~~~--~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (662)
.|.++|+||.++...+ ....|...+.+|...+.- . +.....+|++||||-...
T Consensus 98 ~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~--~--------~~~~~~~il~GDFN~~~~ 152 (256)
T 2jc4_A 98 GVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRD--E--------MTRHGKLVLLGDFNIAPA 152 (256)
T ss_dssp TEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHH--H--------HTTCSSEEEEEECCCCCS
T ss_pred CEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHH--H--------hcCCCCEEEEeECCCCCc
Confidence 6999999999876422 223344444444332210 0 011346999999997654
No 19
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=97.12 E-value=0.0034 Score=59.54 Aligned_cols=54 Identities=15% Similarity=0.172 Sum_probs=35.4
Q ss_pred eEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 425 SVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 425 aVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
.+.+.+.+.+..|.++|+|++++.. .+. +.++++.+. .. ....+|++||||-..
T Consensus 97 ~i~~~~~~~~~~~~v~~~y~p~~~~----~~~---~~~l~~~l~--~~----------~~~~~Il~GDFN~~~ 150 (238)
T 1vyb_A 97 YIMVKGSIQQEELTILNIYAPNTGA----PRF---IKQVLSDLQ--RD----------LDSHTLIMGDFNTPL 150 (238)
T ss_dssp EEEEEEEETTEEEEEEEEECCSSSH----HHH---HHHHHHHTT--TT----------CCTTEEEEEECSSCS
T ss_pred EEEEEEEeCCCcEEEEEEecCCCCc----HHH---HHHHHHHHH--hc----------cCCCEEEEccCCCCC
Confidence 5667777888999999999998642 111 333444322 00 124699999999854
No 20
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=96.64 E-value=0.0038 Score=60.77 Aligned_cols=58 Identities=14% Similarity=0.201 Sum_probs=40.5
Q ss_pred CceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 422 NKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
..|.+.+.+.+.+..|.++|+|++.+.. ...+.+.+.++++.+ ....+|++||||-..
T Consensus 102 ~~~~~~~~i~~~~~~~~v~~vy~p~~~~---~~~~~~~l~~~~~~~---------------~~~~~Ii~GDfN~~~ 159 (245)
T 1wdu_A 102 TNNIVVVGIRTRAWEITLVSYYFEPDKP---IESYLEQIKRVERKM---------------GPKRLIFGGDANAKS 159 (245)
T ss_dssp CSSEEEEEEECSSCEEEEEEEECCTTSC---SHHHHHHHHHHHHTT---------------CSSSEEEEEECCCCC
T ss_pred cCCEEEEEEEcCCCcEEEEEEEeCCCCC---HHHHHHHHHHHHHHh---------------CCCcEEEEeccccCc
Confidence 4677888888888899999999998753 223444566665421 123699999999543
No 21
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=96.33 E-value=0.0059 Score=62.30 Aligned_cols=37 Identities=32% Similarity=0.571 Sum_probs=24.0
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 106 rifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 61 ~lrv~t~Nv~g~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 97 (318)
T 1hd7_A 61 TLKICSWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 97 (318)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecCcchhhhhhhHHHHHHh-hCCCE--EEEEEc
Confidence 46789999998532111236666643 34686 788998
No 22
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=96.30 E-value=0.006 Score=60.31 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=30.4
Q ss_pred eEEEeeccccCCCCCc-hhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 435 SRLCLVCSHLTSGQKD-GAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 435 TsfcFVn~HLaAg~~~-~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
..|.++|+||.++... .....|.+.+..|...+.- . .....+|++||||-..
T Consensus 130 ~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~--~---------~~~~p~Il~GDFN~~~ 182 (285)
T 2o3h_A 130 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG--L---------ASRKPLVLCGDLNVAH 182 (285)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH--H---------HTTSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHh--h---------ccCCCEEEEEECCCCC
Confidence 4689999999876532 1223455544444432210 0 0114699999999754
No 23
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=96.27 E-value=0.0042 Score=59.89 Aligned_cols=37 Identities=16% Similarity=0.093 Sum_probs=24.3
Q ss_pred cccceeeecCce-eEEeeccC-CCCCCCCcCceeEEEEE
Q 006069 581 WCDRILWLGKGI-KQLAYTRA-EILLSDHRPVSSTFLVQ 617 (662)
Q Consensus 581 WCDRIL~~g~~i-~~l~Y~s~-e~~~SDHrPV~A~F~v~ 617 (662)
--|+||....-. +...+.-. +...|||.||.+.|.+.
T Consensus 219 rID~i~~s~~~~~~~~~~~v~~~~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 219 RIDYQMVTPELAAKAVSAHVYKDEKFSDHAPLVVEYDYA 257 (259)
T ss_dssp CCEEEEECHHHHTTEEEEEECCSSCCSSBCCEEEEESCC
T ss_pred EEEEEEECHHHHhHHhheeecCCCCCCCcccEEEEEecc
Confidence 479999875311 12333322 57899999999998653
No 24
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=96.22 E-value=0.001 Score=76.42 Aligned_cols=73 Identities=15% Similarity=0.128 Sum_probs=0.0
Q ss_pred cCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcc-cCCCCCCCCCCCCCCcceEEEeCccCccccCChHHHHHHHHh
Q 006069 433 FQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQTIPSHDQIFWFGDLNYRLNMMDTEVRELVAQ 510 (662)
Q Consensus 433 ~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~-F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~ 510 (662)
.+..|+++|+||.+....+ ..|-.....|++.+. +...........-.....||++||||--- .+.+.+++..
T Consensus 545 ~g~~l~V~ntHL~~~p~~~--~~R~~Qa~~l~~~l~~~~~~~~~~~~~~~~~~~pvIl~GDFNs~P---~s~~~~~l~~ 618 (727)
T 4b8c_D 545 SGDTIWAVTTHLHWDPKFN--DVKTFQVGVLLDHLETLLKEETSHNFRQDIKKFPVLICGDFNSYI---NSAVYELINT 618 (727)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred CCceEEEEEeccccCCCCC--chHHHHHHHHHHHHHHHHHHhcccccccccCCCceEEecccCCCC---CCcceEeeec
Confidence 3678999999999864322 335555555544322 10000000000001124699999999543 3344444433
No 25
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=96.19 E-value=0.013 Score=64.41 Aligned_cols=35 Identities=14% Similarity=0.038 Sum_probs=22.4
Q ss_pred ccceeeecCce-eEEeec-cCCCCCCCCcCceeEEEE
Q 006069 582 CDRILWLGKGI-KQLAYT-RAEILLSDHRPVSSTFLV 616 (662)
Q Consensus 582 CDRIL~~g~~i-~~l~Y~-s~e~~~SDHrPV~A~F~v 616 (662)
-|+||....-. ....+. ..+...|||.||.+.|.+
T Consensus 430 IDyIlvS~~l~~~v~~~~I~~~~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 430 LDYFVVSSRLASYVVDCFPMPTVMGSDHCPFQMWMRH 466 (467)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred eEEEEEcHHHHcceeEEEECCCCCCCCcccEEEEEEc
Confidence 59998875321 122222 234679999999998853
No 26
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=95.65 E-value=0.14 Score=49.23 Aligned_cols=51 Identities=14% Similarity=0.189 Sum_probs=28.3
Q ss_pred EEEeeccccCCCCCch--hHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcc
Q 006069 436 RLCLVCSHLTSGQKDG--AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYR 496 (662)
Q Consensus 436 sfcFVn~HLaAg~~~~--~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYR 496 (662)
.|.++|+|++++...+ ....|.+-+.+|...+. .. +.....+|++||||-.
T Consensus 98 ~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~--~~--------~~~~~p~Il~GDFN~~ 150 (257)
T 2voa_A 98 GIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQ--KT--------VDFRSFAVWCGDMNVA 150 (257)
T ss_dssp TEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHH--HH--------CCTTSCEEEEEECSCC
T ss_pred CEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHH--HH--------hcCCCCEEEEeeCCCC
Confidence 7999999998875321 22233333334433211 00 0112469999999954
No 27
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=95.57 E-value=0.015 Score=57.14 Aligned_cols=36 Identities=31% Similarity=0.587 Sum_probs=24.0
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 107 ifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 4 l~i~s~Nv~g~~~~~~~~l~~~i~~-~~~DI--v~LQEt 39 (265)
T 3g91_A 4 LKIISWNVNGLRAVHRKGFLKWFME-EKPDI--LCLQEI 39 (265)
T ss_dssp EEEEEEECSCHHHHHHHTHHHHHHH-HCCSE--EEEECC
T ss_pred cEEEEEEcCCchhhhhhhHHHHHHh-cCCCE--EEEEec
Confidence 5678999999432221247788854 34686 778997
No 28
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=91.71 E-value=0.28 Score=48.50 Aligned_cols=36 Identities=25% Similarity=0.223 Sum_probs=25.4
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 106 rifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+.|.||||||..-..+. |.+||.. ..||| |++||+
T Consensus 7 ~mki~s~Nvn~~r~~~~~-l~~~l~~-~~~DI--l~LQEt 42 (240)
T 2ei9_A 7 RLRIGQINLGGAEDATRE-LPSIARD-LGLDI--VLVQEQ 42 (240)
T ss_dssp EEEEEEEECTTCHHHHHT-HHHHHHH-HTCSE--EEEESC
T ss_pred cceEEEEecCccHHHHHH-HHHHHHH-cCCCE--EEeecc
Confidence 367899999995433333 7888854 34687 778997
No 29
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=91.05 E-value=0.16 Score=49.86 Aligned_cols=61 Identities=10% Similarity=0.175 Sum_probs=35.8
Q ss_pred ceeEEEEEEEc---CeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCcccc
Q 006069 423 KGSVSVSMTLF---QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRLN 498 (662)
Q Consensus 423 KGaVsVr~~i~---~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI~ 498 (662)
.+.+.+.|... +..|.+||+||.+... .++-+.+.+++..+. .. .....+|++||||-.-.
T Consensus 111 R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~----~~q~~~l~~~~~~~~--~~---------~~~~~vil~GDfN~~~~ 174 (260)
T 2a40_B 111 REPAVVKFSSHSTKVKEFAIVALHSAPSDA----VAEINSLYDVYLDVQ--QK---------WHLNDVMLMGDFNADCS 174 (260)
T ss_dssp SCCEEEEEECTTSSSSEEEEEECCCCGGGH----HHHHHHHHHHHHHHH--HH---------HCCCCEEEEEECCCSTT
T ss_pred eCCEEEEEEeCCCCCceEEEEEecCCCCCc----HHHHHHHHHHHHHHH--Hh---------CCCCCEEEEecCCCCCc
Confidence 55677777765 5699999999997532 111222333332210 00 01246999999997544
No 30
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=90.61 E-value=0.039 Score=52.37 Aligned_cols=40 Identities=28% Similarity=0.401 Sum_probs=25.3
Q ss_pred eeEEEEEeeeeCCCCCCCCCC----CcccccCCCCCCCEEEEeeeee
Q 006069 103 KDVRVTIGTWNVAGRQPYEDL----DIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 103 ~~~rifvgTwNV~G~~p~~~l----dl~~WL~~~~~~DIYvlGfQEi 145 (662)
+...+.|-||||+|..+.... -|.+||.. ..||| |+|||+
T Consensus 10 ~~~~l~v~s~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 53 (256)
T 4fva_A 10 KGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 53 (256)
T ss_dssp TTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCCEEEEEEEecCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEec
Confidence 345788999999985432210 14455533 35795 899998
No 31
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=86.82 E-value=0.11 Score=48.12 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=23.2
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006069 106 RVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 106 rifvgTwNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
++.|-||||+|..+... ..|.+||.. ..||| |+|||+
T Consensus 3 ~l~v~t~Ni~g~~~~~~~~r~~~i~~~i~~-~~pDI--i~LQEv 43 (250)
T 4f1h_A 3 KLSIISWNVDGLDTLNLADRARGLCSYLAL-YTPDV--VFLQEL 43 (250)
T ss_dssp CEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred eEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEeC
Confidence 46678999998533211 114455533 35785 889998
No 32
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=83.75 E-value=0.23 Score=46.92 Aligned_cols=35 Identities=23% Similarity=0.297 Sum_probs=23.3
Q ss_pred ccceeeecCc--eeEEeec-----c--CCCCCCCCcCceeEEEE
Q 006069 582 CDRILWLGKG--IKQLAYT-----R--AEILLSDHRPVSSTFLV 616 (662)
Q Consensus 582 CDRIL~~g~~--i~~l~Y~-----s--~e~~~SDHrPV~A~F~v 616 (662)
-|+||+++.. +....+. . .....|||.||.|.|.+
T Consensus 211 iD~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 211 FDRIFFRAEEGHLIPQSLDLVGLEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CEEEEEECC-CSEEEEEEEEECCSCCTTSSCSCSBCEEEEEEEE
T ss_pred EEEEEEECCccceeeeEEEEEeccccCCCCCCCccccEEEEEEE
Confidence 6999998642 3333332 2 13446999999999976
No 33
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=80.91 E-value=1.8 Score=46.55 Aligned_cols=74 Identities=12% Similarity=0.091 Sum_probs=42.0
Q ss_pred CeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcc-cCCCCCCCCCC--CCCCcceEEEeCccCccccCChHHHHHHHHh
Q 006069 434 QSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTR-FSSVFDTDQPQ--TIPSHDQIFWFGDLNYRLNMMDTEVRELVAQ 510 (662)
Q Consensus 434 ~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~-F~~~~~~~~p~--~I~dhD~Vfw~GDLNYRI~l~~~~v~~lI~~ 510 (662)
+..||++|+||..+... ...|..++..|++.+. |........+. .-...-.||++||||-- +...+-+++..
T Consensus 194 ~~~l~V~nTHL~~~p~~--~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~---P~s~vy~~L~~ 268 (398)
T 3ngq_A 194 KQLLIVANAHMHWDPEY--SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSL---PDSGVVEYLSN 268 (398)
T ss_dssp CCEEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCC---TTSHHHHHHHH
T ss_pred CcEEEEEEeCcCCCCCC--HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCC---CCCHHHHHHhc
Confidence 46799999999997543 3456677776665432 21000000000 00012369999999954 55667777776
Q ss_pred hh
Q 006069 511 KR 512 (662)
Q Consensus 511 ~~ 512 (662)
+.
T Consensus 269 G~ 270 (398)
T 3ngq_A 269 GG 270 (398)
T ss_dssp TE
T ss_pred CC
Confidence 54
No 34
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=80.86 E-value=0.32 Score=51.14 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=26.7
Q ss_pred eeeEEEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006069 102 TKDVRVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 102 ~~~~rifvgTwNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+..++.|-||||+|...... .-|.+||.. ..||| |+|||+
T Consensus 115 ~~~~~lkVlSWNI~Gl~~~~~~~R~~~I~~~I~~-~~PDI--V~LQEv 159 (362)
T 4gew_A 115 LKGFEVSVMSWNIDGLDGRSLLTRMKAVAHIVKN-VNPDI--LFLQEV 159 (362)
T ss_dssp TTTCEEEEEEEECCTTCCTTHHHHHHHHHHHHHH-HCCSE--EEEEEE
T ss_pred CCCCeEEEEEEEeCCCCCcCHHHHHHHHHHHHHH-cCCCE--EEEEcC
Confidence 345678889999999532111 014567743 45796 899998
No 35
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=77.04 E-value=0.27 Score=48.66 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=35.5
Q ss_pred cCceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 421 GNKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 421 GNKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
...|++.|.+.+ ..+.+||+|++.+... ..+.+.+..++..+. ...+|++||||---
T Consensus 76 ~~~~~~~i~i~~--~~i~i~svY~P~~~~~---~~~~~~l~~l~~~~~---------------~~~~Ii~GDfN~~~ 132 (240)
T 2ei9_A 76 SSTHITVVHIGG--WDLYMVSAYFQYSDPI---DPYLHRLGNILDRLR---------------GARVVICADTNAHS 132 (240)
T ss_dssp CCSSEEEEEETT--TTEEEEEEECCTTSCS---HHHHHHHHHHHHHTT---------------TSCEEEEEECCCCC
T ss_pred CCCCEEEEEEee--ccEEEEEEEcCCCCch---hHHHHHHHHHHHhcC---------------CCcEEEEEeccccc
Confidence 346777766543 5689999999998642 223333444433210 13699999999544
No 36
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=76.75 E-value=0.25 Score=47.54 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=22.5
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 107 ifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
+.|.||||+|.... -..|.+||.. ..||| |||||+
T Consensus 1 lrv~t~Nv~~~~~~-~~~i~~~i~~-~~~Di--i~LQE~ 35 (268)
T 1ako_A 1 MKFVSFNINGLRAR-PHQLEAIVEK-HQPDV--IGLQET 35 (268)
T ss_dssp CEEEEEECSCGGGC-HHHHHHHHHH-HCCSE--EEEECC
T ss_pred CEEEEEehhHHHHH-HHHHHHHHHH-cCCCE--EEEEec
Confidence 35899999985321 1124556533 35785 899998
No 37
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=76.36 E-value=0.27 Score=47.06 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=24.2
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 107 ifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
+.|.||||+|........|.+||.. ..||| |+|||+
T Consensus 2 l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 37 (259)
T 2jc5_A 2 LKIISANVNGIRSAYKKGFYEYIAA-SGADI--VCVQEL 37 (259)
T ss_dssp EEEEEEECSSHHHHHHTTHHHHHHH-TTCSE--EEEECC
T ss_pred cEEEEEeeccHHHHHHhHHHHHHHh-cCCCE--EEEEEe
Confidence 5689999998432111136777743 45787 788999
No 38
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=74.70 E-value=0.23 Score=48.55 Aligned_cols=35 Identities=17% Similarity=0.078 Sum_probs=22.3
Q ss_pred ccceeeecCce-eEEeecc-CCCCCCCCcCceeEEEE
Q 006069 582 CDRILWLGKGI-KQLAYTR-AEILLSDHRPVSSTFLV 616 (662)
Q Consensus 582 CDRIL~~g~~i-~~l~Y~s-~e~~~SDHrPV~A~F~v 616 (662)
-|+||....-. ......- .+...|||.||.+.|..
T Consensus 221 ID~il~s~~~~~~~~~~~i~~~~~~SDH~Pv~~~~~~ 257 (265)
T 3g91_A 221 LDYFFVNEEFKGKVKRSWILSDVMGSDHCPIGLEIEL 257 (265)
T ss_dssp CEEEEEEGGGGGGEEEEEECTTCCSSSBCCEEEEEEC
T ss_pred EEEEEECHHHHhhhcEEEEeCCCCCCCcceEEEEhhh
Confidence 69998876432 1122221 24578999999998754
No 39
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=72.35 E-value=3.7 Score=42.06 Aligned_cols=59 Identities=17% Similarity=0.170 Sum_probs=35.7
Q ss_pred CceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccC
Q 006069 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLN 494 (662)
Q Consensus 422 NKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLN 494 (662)
..|.+.|+ +.+ +.|++.||.+.... .|.+-+..|... |.... ..|. ..|...+++||||
T Consensus 121 ~R~~l~i~--i~g--~~f~s~Hl~~~~~~----ea~~~v~~I~~~--~~~~~--~~~~--~~~~~~ii~GDFN 179 (261)
T 1sr4_B 121 SRPAVGIR--IGT--DVFFTVHALATGGS----DAVSLIRNIFTT--FNSSS--SPPE--RRVYSWMVVGDFN 179 (261)
T ss_dssp CCCEEEEE--ETT--EEEEEEECCTTTTT----THHHHHHHHHHH--HHC-----CGG--GGGCEEEEEEECS
T ss_pred CcceEEEE--ECC--eEEEEeCCCCCCCc----hHHHHHHHHHHH--HHhcc--cCCc--ccCCcEEEEeeCC
Confidence 67888774 677 99999999997521 244445555542 21100 0010 0235799999999
No 40
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=69.95 E-value=0.49 Score=44.52 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=24.1
Q ss_pred EEEEeeeeCCCCCCCCC-CCcccccCCCCCCCEEEEeeeee
Q 006069 106 RVTIGTWNVAGRQPYED-LDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 106 rifvgTwNV~G~~p~~~-ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+.|.||||+|...... ..|.+||.. ..||| |+|||+
T Consensus 7 ~lri~t~Nv~g~~~~~~~~~~~~~i~~-~~~DI--v~LQE~ 44 (238)
T 1vyb_A 7 HITILTLNINGLNSAIKRHRLASWIKS-QDPSV--CCIQET 44 (238)
T ss_dssp CEEEEEEECSCCCSHHHHHHHHHHHHH-HCCSE--EEEECC
T ss_pred cceEEEEecccCCchhhHHHHHHHHHH-cCCCE--EEEecc
Confidence 36789999999543210 135566643 34686 889998
No 41
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=68.19 E-value=0.63 Score=44.63 Aligned_cols=35 Identities=29% Similarity=0.383 Sum_probs=22.4
Q ss_pred EEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 107 VTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 107 ifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
+.|.||||+|..... ..|.+||.. ..||| |+|||+
T Consensus 2 lrv~t~Nv~g~~~~~-~~i~~~i~~-~~~Di--i~lQE~ 36 (257)
T 2voa_A 2 LKIATFNVNSIRSRL-HIVIPWLKE-NKPDI--LCMQET 36 (257)
T ss_dssp EEEEEEECSCGGGTH-HHHHHHHHH-HCCSE--EEEECC
T ss_pred eEEEEEecCChHHHH-HHHHHHHhh-cCCCE--EEEEEe
Confidence 568999999853221 124455532 35786 889999
No 42
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=66.81 E-value=0.5 Score=46.43 Aligned_cols=37 Identities=32% Similarity=0.593 Sum_probs=24.2
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 106 rifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+.|.||||+|........|..||.. ..||| |+|||+
T Consensus 28 ~l~v~t~Ni~~~~~~~~~~i~~~i~~-~~~DI--i~LQE~ 64 (285)
T 2o3h_A 28 TLKIASWNVDGLRAWIKKKGLDWVKE-EAPDI--LCLQET 64 (285)
T ss_dssp CEEEEEEECSSHHHHHHTTHHHHHHH-HCCSE--EEEECC
T ss_pred ceEEEEEecccChhhhhhhHHHHHHh-cCCCE--EEEEEe
Confidence 47789999998432111126666643 35685 889999
No 43
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=65.24 E-value=0.57 Score=47.53 Aligned_cols=52 Identities=17% Similarity=0.176 Sum_probs=30.6
Q ss_pred eEEEeeccccCCCCCch-hHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 435 SRLCLVCSHLTSGQKDG-AEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 435 TsfcFVn~HLaAg~~~~-~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
..|.++|+||.++.... ....|.+.+..|...+.= +.....+|++||||-..
T Consensus 163 ~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~-----------~~~~~pvIl~GDFN~~~ 215 (318)
T 1hd7_A 163 DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKG-----------LASRKPLVLCGDLNVAH 215 (318)
T ss_dssp SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHH-----------HHHHSCEEEEEECSCCC
T ss_pred CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHh-----------cccCCCEEEEeeCCCCC
Confidence 46999999998765321 223455555555443210 00114699999999654
No 44
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=61.70 E-value=3.6 Score=39.82 Aligned_cols=36 Identities=22% Similarity=0.173 Sum_probs=25.0
Q ss_pred cccceeeecCceeEEeeccCCC----CCCCCcCceeEEEEE
Q 006069 581 WCDRILWLGKGIKQLAYTRAEI----LLSDHRPVSSTFLVQ 617 (662)
Q Consensus 581 WCDRIL~~g~~i~~l~Y~s~e~----~~SDHrPV~A~F~v~ 617 (662)
--|+||..+ +++...+..... ..|||.||.|.....
T Consensus 222 riD~I~~s~-~~~~~~~~v~~~~~~~~~SDH~PV~a~~~~~ 261 (267)
T 3g6s_A 222 KIDFIFVTP-QVLVKSCEIPAEVPEALLSDHNPQLADLELE 261 (267)
T ss_dssp CCEEEEECT-TSEEEEEEECCCCSSSCCCSBCCEEEEEEEC
T ss_pred cEeEEEeCC-CceEEEEEEecCCCCCCCCCcccEEEEEEec
Confidence 369999976 366666654322 579999999876543
No 45
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=61.63 E-value=0.69 Score=44.09 Aligned_cols=34 Identities=32% Similarity=0.530 Sum_probs=21.9
Q ss_pred EEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 108 TIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 108 fvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.|.||||+|-.... ..|.+||.. ..||| |+|||+
T Consensus 2 rv~t~Nv~~~~~~~-~~i~~~i~~-~~~DI--v~LQE~ 35 (256)
T 2jc4_A 2 KITTWNVNSLNVRL-PQVQNLLAD-NPPDI--LVLQEL 35 (256)
T ss_dssp EEEEEECSCHHHHH-HHHHHHHHS-SCCSE--EEEECC
T ss_pred EEEEEEcCCcHHHH-HHHHHHHHh-cCCCE--EEEEee
Confidence 57899999842111 124556643 45787 788998
No 46
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=60.70 E-value=0.72 Score=50.65 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=24.2
Q ss_pred EEEEeeeeCCCCCCCC--C-CCcccccCCCCCCCEEEEeeeee
Q 006069 106 RVTIGTWNVAGRQPYE--D-LDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 106 rifvgTwNV~G~~p~~--~-ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+.|.||||+|..... . ..|.+||.. ..||| |+|||+
T Consensus 149 ~LKI~TwNVnGl~~~~kr~~~~i~~~I~~-~~pDI--VcLQEt 188 (467)
T 2j63_A 149 MYKFITWNVAGLRGLLKKNASALRAFMEA-EKPDV--LCLQET 188 (467)
T ss_dssp EEEEEEEECSCHHHHHHHCTTHHHHHHHH-HCCSE--EEEECC
T ss_pred CeEEEEEEcCCCcccccccHHHHHHHHHH-cCCCE--EEEEec
Confidence 4778999999942111 0 136777754 34686 889998
No 47
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=58.36 E-value=1.6 Score=41.94 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=25.4
Q ss_pred ccceeeecCceeEEeeccC-----CCCCCCCcCceeEEEEE
Q 006069 582 CDRILWLGKGIKQLAYTRA-----EILLSDHRPVSSTFLVQ 617 (662)
Q Consensus 582 CDRIL~~g~~i~~l~Y~s~-----e~~~SDHrPV~A~F~v~ 617 (662)
-|+||. .+++...+... ....|||.||.+.|.+.
T Consensus 214 iD~i~~--~~~~~~~~~v~~~~~~~~~~SDH~pv~~~l~~~ 252 (257)
T 3l1w_A 214 IDYIYV--KGWQVQQTASLTDSIDGRFPSDHFPLEAEVAGE 252 (257)
T ss_dssp CEEEEE--ESEEEEEEEECCCCBTTBCSSSBCCEEEEEEEC
T ss_pred eeEEEE--CCcEEEEEEEeccCcCCcccCCcceEEEEEEEE
Confidence 699999 56666666532 24689999999998764
No 48
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=57.84 E-value=1.8 Score=41.38 Aligned_cols=35 Identities=17% Similarity=0.072 Sum_probs=23.5
Q ss_pred CcccceeeecCceeEEeecc-----CCCCCCCCcCceeEEE
Q 006069 580 AWCDRILWLGKGIKQLAYTR-----AEILLSDHRPVSSTFL 615 (662)
Q Consensus 580 SWCDRIL~~g~~i~~l~Y~s-----~e~~~SDHrPV~A~F~ 615 (662)
.--|+||..+ ++....+.. .....|||.||.+.|.
T Consensus 226 ~riD~i~~s~-~~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~ 265 (266)
T 3teb_A 226 KRLDYIFSNK-ELKVKESKVIFNNKNKEIVSDHFGIEVKIE 265 (266)
T ss_dssp ECCEEEEESS-CCCEEEEEEESSSSSSCCCSSSCEEEEEEC
T ss_pred CeeEEEEeCC-CeEEEEEEEEeCCCCCCCcCCccCEEEEEE
Confidence 3479999975 343433332 1256799999999885
No 49
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=56.65 E-value=0.91 Score=43.75 Aligned_cols=36 Identities=17% Similarity=0.004 Sum_probs=24.4
Q ss_pred EEEEeeeeCCCCCCCCCCCcccccCCCCCCCEEEEeeeee
Q 006069 106 RVTIGTWNVAGRQPYEDLDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 106 rifvgTwNV~G~~p~~~ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+.|.||||+|.....+ .|..|+.. ..||| |++||+
T Consensus 19 ~lri~s~Nv~~~~~~~~-~l~~~i~~-~~~DI--v~lQE~ 54 (245)
T 1wdu_A 19 PYRVLQANLQRKKLATA-ELAIEAAT-RKAAI--ALIQEP 54 (245)
T ss_dssp CEEEEEEECTTCHHHHH-HHHHHHHH-HTCSE--EEEESC
T ss_pred ceeeeeeeccccHHHHH-HHHHHHhh-cCCCE--EEEEcc
Confidence 37789999998432111 36677744 45686 889998
No 50
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=56.31 E-value=7.7 Score=38.06 Aligned_cols=15 Identities=40% Similarity=0.437 Sum_probs=13.1
Q ss_pred CCCCCCcCceeEEEE
Q 006069 602 ILLSDHRPVSSTFLV 616 (662)
Q Consensus 602 ~~~SDHrPV~A~F~v 616 (662)
...|||.||.|.|.+
T Consensus 291 ~~~SDH~pv~a~l~~ 305 (306)
T 2ddr_A 291 NDYSDHYPVEATISM 305 (306)
T ss_dssp CCSCSSCCEEEEEEC
T ss_pred cCCCCCcceeEEEEe
Confidence 578999999999865
No 51
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=53.65 E-value=3 Score=42.85 Aligned_cols=61 Identities=11% Similarity=0.153 Sum_probs=38.0
Q ss_pred CceeEEEEEEEcCeEEEeeccccCCCCCchhHHHHhhhHHHHHhhcccCCCCCCCCCCCCCCcceEEEeCccCccc
Q 006069 422 NKGSVSVSMTLFQSRLCLVCSHLTSGQKDGAEQRRNSDVSEIRRRTRFSSVFDTDQPQTIPSHDQIFWFGDLNYRL 497 (662)
Q Consensus 422 NKGaVsVr~~i~~TsfcFVn~HLaAg~~~~~~~rRN~D~~eIlrr~~F~~~~~~~~p~~I~dhD~Vfw~GDLNYRI 497 (662)
....++|++ . .+.|.+.|+.+.... .|.+.+..|... |.. .|..+...-.++++||||=.=
T Consensus 130 ~Rp~lgiri--~--~~~ff~tHa~a~~g~----da~a~v~~I~~~--~~~-----~~~~~~~~~pwii~GDFNr~P 190 (262)
T 2f1n_A 130 GRPLLGIRI--G--NDAFFTAHAIAMRNN----DAPALVEEVYNF--FRD-----SRDPVHQALNWMILGDFNREP 190 (262)
T ss_dssp CCCEEEEEE--T--TEEEEEEECCSSSSC----SHHHHHHHHHHH--HHT-----CSSHHHHTCEEEEEEECSSCH
T ss_pred CCceEEEEE--C--CEEEEEEEecCCCCc----cHHHHHHHHHHH--Hhc-----CcccccCCCcEEEEecCCCCC
Confidence 677777776 2 488999999997432 266778888763 211 111000012699999999643
No 52
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=51.06 E-value=2.1 Score=42.72 Aligned_cols=39 Identities=26% Similarity=0.448 Sum_probs=22.9
Q ss_pred eEEEEEeeeeCCCCCCCCCCCcccc----------cCCCCCCCEEEEeeeee
Q 006069 104 DVRVTIGTWNVAGRQPYEDLDIDDW----------LCTQEPADIYIFGFQEV 145 (662)
Q Consensus 104 ~~rifvgTwNV~G~~p~~~ldl~~W----------L~~~~~~DIYvlGfQEi 145 (662)
.-.|.|.||||....+........| |. ...||| |||||+
T Consensus 4 ~~~lrV~t~Ni~~~~~~~~~~~~~w~~r~~~i~~~i~-~~~~DI--v~LQEv 52 (298)
T 3mpr_A 4 PTSLTVASYNLRNANGSDSARGDGWGQRYPVIAQMVQ-YHDFDI--FGTQEC 52 (298)
T ss_dssp CEEEEEEEEECCCCCHHHHHHTCCHHHHHHHHHHHHH-HTTCSE--EEEESB
T ss_pred CCcEEEEEEEeccCCCCCcccccCHHHHHHHHHHHHH-HcCCCE--EEEeCC
Confidence 3468899999976443211001234 22 235785 899999
No 53
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=50.90 E-value=5.2 Score=41.00 Aligned_cols=38 Identities=29% Similarity=0.533 Sum_probs=27.3
Q ss_pred EEeeeeCCCCCCCCC-----CCcccccCCCCCCCEEEEeeeeeeeC
Q 006069 108 TIGTWNVAGRQPYED-----LDIDDWLCTQEPADIYIFGFQEVVPL 148 (662)
Q Consensus 108 fvgTwNV~G~~p~~~-----ldl~~WL~~~~~~DIYvlGfQEiV~L 148 (662)
.|+|||+-|. ++.+ ..+..||.....+|| |.+||+--+
T Consensus 6 kv~TwNi~g~-~~~~~~k~~~~i~~~i~~~~~~DI--laLQEa~~~ 48 (261)
T 1sr4_B 6 KVATWNLQGS-SAVNESKWNINVRQLLSGEQGADI--LMVQEAGSL 48 (261)
T ss_dssp CEEEEECCCC-SSSSHHHHHHHHHHHHCSTTCCSE--EEEESCCSC
T ss_pred EEEEEEcCCC-CCCChhhhhhHHHHHHcCCCCCCE--EEEecCCCC
Confidence 4899999994 4433 236778876577898 667999555
No 54
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=45.63 E-value=19 Score=36.88 Aligned_cols=38 Identities=21% Similarity=0.553 Sum_probs=25.0
Q ss_pred EEEEeeeeCCCCCCCCC----CCcccccCCCCCCCEEEEeeeee
Q 006069 106 RVTIGTWNVAGRQPYED----LDIDDWLCTQEPADIYIFGFQEV 145 (662)
Q Consensus 106 rifvgTwNV~G~~p~~~----ldl~~WL~~~~~~DIYvlGfQEi 145 (662)
.+.|+|||+-|..+..+ .+|..-+....++|| +++||.
T Consensus 15 ~~kV~TwNiqgs~~~teskw~~~v~~lI~~~~~~DI--vaLQEa 56 (262)
T 2f1n_A 15 DFRVATWNLQGASATTESKWNINVRQLISGENAVDI--LAVQEA 56 (262)
T ss_dssp GCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSE--EEEEEE
T ss_pred eeEEEEEEcCCCCCCCcccccccHHHHHccCCCCCE--EEEeec
Confidence 46789999999655333 234443323455897 778999
No 55
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=44.82 E-value=10 Score=37.22 Aligned_cols=15 Identities=33% Similarity=0.157 Sum_probs=12.5
Q ss_pred CCCCCCcCceeEEEE
Q 006069 602 ILLSDHRPVSSTFLV 616 (662)
Q Consensus 602 ~~~SDHrPV~A~F~v 616 (662)
...|||.||.|.|.+
T Consensus 286 ~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 286 QDFSDHYPVVGFTDN 300 (301)
T ss_dssp CCSSSSCCEEEEEC-
T ss_pred cCCCCCccEEEEEec
Confidence 478999999999865
No 56
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=32.87 E-value=5.6 Score=40.32 Aligned_cols=37 Identities=14% Similarity=-0.035 Sum_probs=21.9
Q ss_pred EEEEeeeeCCCCCCCCCCCccccc------C---CCCCCCEEEEeeeee
Q 006069 106 RVTIGTWNVAGRQPYEDLDIDDWL------C---TQEPADIYIFGFQEV 145 (662)
Q Consensus 106 rifvgTwNV~G~~p~~~ldl~~WL------~---~~~~~DIYvlGfQEi 145 (662)
.|.|.||||.+..+..+-+ ..|- . ....||| |||||+
T Consensus 29 ~lrV~T~Ni~~~~~~~~~~-~~~~~R~~~i~~~~~~~~pDI--v~LQEv 74 (317)
T 3i41_A 29 DLKLVSHNVYMLSTVLYPN-WGQYKRADLIGQSSYIKNNDV--VIFNEA 74 (317)
T ss_dssp CCCEEEEEEEECCTTTSTT-SCHHHHHHHHHHCSTTSSCSE--EEEEEE
T ss_pred ceEEEEEecccCccccCCC-ccHHHHHHHHHHHhhccCCCE--EEEEee
Confidence 5778899999953221110 0221 1 1246786 899999
Done!