Query 006070
Match_columns 662
No_of_seqs 474 out of 3276
Neff 7.3
Searched_HMMs 46136
Date Thu Mar 28 17:54:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006070.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006070hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02270 phospholipase D alpha 100.0 1E-158 3E-163 1329.5 63.1 660 1-660 1-666 (808)
2 PLN03008 Phospholipase D delta 100.0 1E-155 3E-160 1303.8 62.8 637 4-660 10-725 (868)
3 PLN02352 phospholipase D epsil 100.0 2E-144 5E-149 1212.9 58.8 607 3-660 5-616 (758)
4 KOG1329 Phospholipase D1 [Lipi 100.0 9E-132 2E-136 1104.7 44.8 596 3-660 71-710 (887)
5 PLN02866 phospholipase D 100.0 3.7E-87 7.9E-92 762.8 44.1 497 64-660 213-876 (1068)
6 PRK12452 cardiolipin synthetas 100.0 4.7E-44 1E-48 400.5 30.4 284 166-604 133-417 (509)
7 PRK01642 cls cardiolipin synth 100.0 1.7E-42 3.6E-47 387.3 31.1 280 167-604 110-391 (483)
8 PRK11263 cardiolipin synthase 100.0 4.6E-40 9.9E-45 358.6 31.6 277 168-604 3-279 (411)
9 PHA02820 phospholipase-D-like 100.0 1.6E-29 3.4E-34 277.0 29.8 276 203-616 26-311 (424)
10 COG1502 Cls Phosphatidylserine 100.0 3.1E-29 6.8E-34 278.3 29.8 287 170-604 57-345 (438)
11 PHA03003 palmytilated EEV memb 100.0 2.4E-28 5.2E-33 264.4 25.2 266 203-604 31-297 (369)
12 PRK09428 pssA phosphatidylseri 100.0 7.1E-27 1.5E-31 256.9 28.5 257 171-566 23-301 (451)
13 cd04015 C2_plant_PLD C2 domain 100.0 3E-28 6.5E-33 233.1 15.3 140 2-142 1-158 (158)
14 cd04016 C2_Tollip C2 domain pr 99.9 4.8E-25 1E-29 201.1 14.4 119 7-141 1-121 (121)
15 cd08379 C2D_MCTP_PRT_plant C2 99.9 4.6E-23 1E-27 189.3 14.4 115 9-137 1-125 (126)
16 cd04013 C2_SynGAP_like C2 doma 99.9 1.7E-22 3.7E-27 189.4 15.5 124 6-147 9-144 (146)
17 cd08682 C2_Rab11-FIP_classI C2 99.9 3.1E-22 6.6E-27 184.5 13.3 117 10-140 1-126 (126)
18 cd04042 C2A_MCTP_PRT C2 domain 99.9 8.1E-22 1.7E-26 180.3 15.5 119 10-143 2-121 (121)
19 cd08400 C2_Ras_p21A1 C2 domain 99.9 1.4E-21 3E-26 180.2 15.6 120 7-143 3-124 (126)
20 cd08401 C2A_RasA2_RasA3 C2 dom 99.9 1.7E-21 3.7E-26 178.3 14.3 119 10-141 2-121 (121)
21 cd04019 C2C_MCTP_PRT_plant C2 99.9 3.9E-21 8.5E-26 182.3 14.3 122 9-143 1-133 (150)
22 cd08681 C2_fungal_Inn1p-like C 99.9 3.5E-21 7.6E-26 175.1 11.6 117 8-141 1-118 (118)
23 cd08678 C2_C21orf25-like C2 do 99.8 4.4E-20 9.5E-25 170.1 14.4 122 10-146 1-124 (126)
24 cd04022 C2A_MCTP_PRT_plant C2 99.8 4.7E-20 1E-24 170.1 13.6 119 9-142 1-126 (127)
25 cd04014 C2_PKC_epsilon C2 doma 99.8 1E-19 2.2E-24 169.1 15.1 126 5-143 1-130 (132)
26 cd08378 C2B_MCTP_PRT_plant C2 99.8 8.8E-20 1.9E-24 167.0 12.6 112 10-141 2-119 (121)
27 cd08376 C2B_MCTP_PRT C2 domain 99.8 2.1E-19 4.5E-24 162.9 14.9 113 9-142 1-115 (116)
28 cd04044 C2A_Tricalbin-like C2 99.8 1.1E-19 2.5E-24 166.3 13.2 120 8-143 2-124 (124)
29 cd08391 C2A_C2C_Synaptotagmin_ 99.8 1.2E-19 2.7E-24 165.3 13.2 120 8-141 1-121 (121)
30 cd04054 C2A_Rasal1_RasA4 C2 do 99.8 1.7E-19 3.6E-24 165.1 13.9 118 9-140 1-120 (121)
31 cd04036 C2_cPLA2 C2 domain pre 99.8 1.9E-19 4.1E-24 164.1 14.0 113 10-141 2-117 (119)
32 cd08377 C2C_MCTP_PRT C2 domain 99.8 2.3E-19 4.9E-24 163.3 14.3 117 8-141 1-118 (119)
33 cd08395 C2C_Munc13 C2 domain t 99.8 2E-19 4.3E-24 163.9 12.4 101 9-123 1-112 (120)
34 cd04024 C2A_Synaptotagmin-like 99.8 3E-19 6.4E-24 164.5 13.5 120 8-141 1-128 (128)
35 cd08677 C2A_Synaptotagmin-13 C 99.8 1.3E-19 2.7E-24 163.4 9.8 100 6-121 12-118 (118)
36 cd04033 C2_NEDD4_NEDD4L C2 dom 99.8 5E-19 1.1E-23 164.4 13.3 120 9-142 1-133 (133)
37 KOG1030 Predicted Ca2+-depende 99.8 1.4E-19 3E-24 169.4 8.9 97 5-115 3-100 (168)
38 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 8.9E-19 1.9E-23 160.6 13.6 117 10-140 2-123 (123)
39 cd08373 C2A_Ferlin C2 domain f 99.8 1.2E-18 2.6E-23 160.7 14.3 117 14-148 2-122 (127)
40 cd08375 C2_Intersectin C2 doma 99.8 1.6E-18 3.4E-23 161.9 14.4 115 7-141 14-135 (136)
41 cd08381 C2B_PI3K_class_II C2 d 99.8 5.8E-19 1.3E-23 161.8 11.3 102 6-121 11-121 (122)
42 cd04028 C2B_RIM1alpha C2 domai 99.8 9E-19 1.9E-23 164.7 12.4 107 6-124 27-139 (146)
43 cd08685 C2_RGS-like C2 domain 99.8 5.5E-19 1.2E-23 161.2 9.6 102 6-121 10-119 (119)
44 cd04046 C2_Calpain C2 domain p 99.8 5.2E-18 1.1E-22 156.4 15.5 121 7-143 2-123 (126)
45 cd04051 C2_SRC2_like C2 domain 99.8 1.1E-18 2.3E-23 160.5 10.8 114 9-137 1-125 (125)
46 cd04050 C2B_Synaptotagmin-like 99.8 1.8E-18 4E-23 154.1 11.7 98 10-123 2-102 (105)
47 cd08394 C2A_Munc13 C2 domain f 99.8 2.9E-18 6.4E-23 156.1 12.1 98 8-123 2-101 (127)
48 cd04029 C2A_SLP-4_5 C2 domain 99.8 2.9E-18 6.3E-23 157.8 12.1 105 6-122 13-125 (125)
49 cd08387 C2A_Synaptotagmin-8 C2 99.8 3E-18 6.6E-23 157.3 12.0 103 7-122 15-123 (124)
50 cd08688 C2_KIAA0528-like C2 do 99.8 2.6E-18 5.7E-23 154.5 11.0 101 10-123 1-109 (110)
51 cd08385 C2A_Synaptotagmin-1-5- 99.8 5.1E-18 1.1E-22 155.7 12.2 103 7-122 15-123 (124)
52 cd08393 C2A_SLP-1_2 C2 domain 99.8 4.5E-18 9.7E-23 156.6 11.2 102 8-122 15-125 (125)
53 cd04010 C2B_RasA3 C2 domain se 99.8 7.1E-18 1.5E-22 159.4 12.4 103 9-126 1-125 (148)
54 cd04045 C2C_Tricalbin-like C2 99.7 7.9E-18 1.7E-22 153.8 11.8 104 8-125 1-105 (120)
55 cd08383 C2A_RasGAP C2 domain ( 99.7 2.3E-17 4.9E-22 149.5 14.5 113 9-141 1-117 (117)
56 cd08382 C2_Smurf-like C2 domai 99.7 1.2E-17 2.7E-22 153.2 12.7 116 10-139 2-122 (123)
57 cd04052 C2B_Tricalbin-like C2 99.7 7E-18 1.5E-22 152.0 10.7 101 37-144 9-111 (111)
58 cd04043 C2_Munc13_fungal C2 do 99.7 4.1E-17 8.8E-22 150.1 15.0 113 9-142 2-121 (126)
59 cd04027 C2B_Munc13 C2 domain s 99.7 2E-17 4.3E-22 152.7 12.7 114 9-139 2-127 (127)
60 cd04041 C2A_fungal C2 domain f 99.7 8.1E-18 1.8E-22 151.5 9.8 99 8-122 1-107 (111)
61 cd04040 C2D_Tricalbin-like C2 99.7 2.7E-17 5.8E-22 148.8 12.8 111 10-136 1-113 (115)
62 cd08392 C2A_SLP-3 C2 domain fi 99.7 1.4E-17 2.9E-22 153.9 10.8 102 7-121 14-127 (128)
63 cd08690 C2_Freud-1 C2 domain f 99.7 4.3E-17 9.2E-22 154.6 14.3 119 10-144 4-139 (155)
64 cd08680 C2_Kibra C2 domain fou 99.7 1.5E-17 3.3E-22 152.6 10.5 102 7-121 13-124 (124)
65 cd04017 C2D_Ferlin C2 domain f 99.7 6.3E-17 1.4E-21 151.0 14.5 118 9-144 2-134 (135)
66 cd08388 C2A_Synaptotagmin-4-11 99.7 5.8E-17 1.3E-21 149.8 13.9 103 7-122 15-127 (128)
67 cd04039 C2_PSD C2 domain prese 99.7 2.6E-17 5.5E-22 147.6 11.1 96 8-113 1-99 (108)
68 cd04030 C2C_KIAA1228 C2 domain 99.7 3.1E-17 6.8E-22 151.0 11.6 102 8-122 16-127 (127)
69 cd04018 C2C_Ferlin C2 domain t 99.7 1.9E-17 4.1E-22 156.8 10.2 113 9-123 1-125 (151)
70 cd04011 C2B_Ferlin C2 domain s 99.7 4.3E-17 9.3E-22 146.8 12.0 97 9-123 5-110 (111)
71 cd04031 C2A_RIM1alpha C2 domai 99.7 3.6E-17 7.8E-22 150.1 11.6 102 7-122 15-125 (125)
72 cd04049 C2_putative_Elicitor-r 99.7 3.3E-17 7.2E-22 150.4 11.3 103 8-123 1-108 (124)
73 cd08521 C2A_SLP C2 domain firs 99.7 3.8E-17 8.2E-22 149.5 11.3 102 7-121 13-123 (123)
74 cd08386 C2A_Synaptotagmin-7 C2 99.7 4.3E-17 9.3E-22 149.7 11.7 103 7-122 15-124 (125)
75 cd08407 C2B_Synaptotagmin-13 C 99.7 1.3E-17 2.8E-22 155.7 6.8 111 6-129 13-131 (138)
76 cd08406 C2B_Synaptotagmin-12 C 99.7 1.7E-17 3.7E-22 154.8 7.3 107 7-128 14-128 (136)
77 cd08676 C2A_Munc13-like C2 dom 99.7 6.2E-17 1.4E-21 153.6 10.9 99 6-121 26-153 (153)
78 cd08384 C2B_Rabphilin_Doc2 C2 99.7 3.1E-17 6.6E-22 152.5 8.1 107 7-128 12-126 (133)
79 cd08390 C2A_Synaptotagmin-15-1 99.7 1.7E-16 3.8E-21 145.2 12.2 103 7-122 13-122 (123)
80 cd08404 C2B_Synaptotagmin-4 C2 99.7 5.4E-17 1.2E-21 151.6 8.3 107 7-128 14-128 (136)
81 cd08389 C2A_Synaptotagmin-14_1 99.7 2.1E-16 4.5E-21 145.3 11.8 101 8-122 16-123 (124)
82 cd08692 C2B_Tac2-N C2 domain s 99.7 1E-16 2.2E-21 148.1 8.6 109 7-129 13-129 (135)
83 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.7 1.8E-16 4E-21 152.4 10.7 104 6-122 25-137 (162)
84 cd04032 C2_Perforin C2 domain 99.7 2.4E-16 5.3E-21 145.0 10.9 89 7-110 27-118 (127)
85 cd08402 C2B_Synaptotagmin-1 C2 99.7 5.2E-17 1.1E-21 151.6 6.4 108 6-128 13-128 (136)
86 cd08405 C2B_Synaptotagmin-7 C2 99.7 9.3E-17 2E-21 149.9 7.6 108 7-129 14-129 (136)
87 cd00275 C2_PLC_like C2 domain 99.7 9.3E-16 2E-20 141.1 14.1 119 9-141 3-127 (128)
88 cd08403 C2B_Synaptotagmin-3-5- 99.7 8E-17 1.7E-21 150.0 7.0 108 6-128 12-127 (134)
89 cd08675 C2B_RasGAP C2 domain s 99.7 3.8E-16 8.3E-21 146.0 11.6 101 10-124 1-121 (137)
90 cd08686 C2_ABR C2 domain in th 99.7 8.2E-16 1.8E-20 138.4 12.9 104 10-141 1-118 (118)
91 cd04038 C2_ArfGAP C2 domain pr 99.7 4.4E-16 9.5E-21 146.8 11.4 94 7-115 1-95 (145)
92 cd04021 C2_E3_ubiquitin_ligase 99.7 1.3E-15 2.9E-20 140.1 13.3 115 9-139 3-124 (125)
93 cd00276 C2B_Synaptotagmin C2 d 99.6 2.2E-16 4.9E-21 146.4 7.3 107 7-128 13-127 (134)
94 cd04026 C2_PKC_alpha_gamma C2 99.6 9.6E-16 2.1E-20 142.0 10.9 106 5-124 10-122 (131)
95 cd08409 C2B_Synaptotagmin-15 C 99.6 3.1E-16 6.6E-21 146.7 6.5 108 7-128 14-129 (137)
96 cd08691 C2_NEDL1-like C2 domai 99.6 4.4E-15 9.4E-20 138.6 13.9 115 9-139 2-136 (137)
97 cd08410 C2B_Synaptotagmin-17 C 99.6 3.6E-16 7.9E-21 145.8 6.6 109 6-129 12-129 (135)
98 cd04037 C2E_Ferlin C2 domain f 99.6 2E-15 4.3E-20 138.8 11.3 117 9-143 1-120 (124)
99 KOG1028 Ca2+-dependent phospho 99.6 1.9E-15 4E-20 166.0 13.1 128 6-146 165-298 (421)
100 cd04009 C2B_Munc13-like C2 dom 99.6 1.6E-15 3.4E-20 141.1 10.3 91 8-111 16-118 (133)
101 cd08408 C2B_Synaptotagmin-14_1 99.6 4.1E-16 8.9E-21 146.0 6.3 108 7-128 14-130 (138)
102 PLN03200 cellulose synthase-in 99.6 1.2E-15 2.7E-20 188.3 11.4 119 6-143 1978-2101(2102)
103 cd04035 C2A_Rabphilin_Doc2 C2 99.6 4.7E-15 1E-19 135.9 12.2 101 8-121 15-123 (123)
104 cd04048 C2A_Copine C2 domain f 99.6 2.9E-15 6.4E-20 136.7 10.5 98 13-123 5-114 (120)
105 PRK05443 polyphosphate kinase; 99.6 1.1E-13 2.5E-18 159.1 22.9 229 202-601 347-592 (691)
106 cd00138 PLDc Phospholipase D. 99.6 3E-14 6.5E-19 138.4 14.4 144 203-423 21-169 (176)
107 TIGR03705 poly_P_kin polyphosp 99.6 9.4E-14 2E-18 158.9 18.9 230 202-603 338-584 (672)
108 KOG0696 Serine/threonine prote 99.6 1.4E-15 3.1E-20 158.8 3.7 102 8-123 180-288 (683)
109 KOG2059 Ras GTPase-activating 99.5 2.8E-14 6.1E-19 157.1 8.7 127 7-148 4-131 (800)
110 PRK12452 cardiolipin synthetas 99.5 2.8E-14 6.2E-19 160.6 8.9 144 196-423 337-480 (509)
111 PHA03003 palmytilated EEV memb 99.5 1.7E-13 3.8E-18 148.7 13.6 146 204-423 217-363 (369)
112 cd04047 C2B_Copine C2 domain s 99.5 1.8E-13 4E-18 122.7 9.7 88 12-113 4-102 (110)
113 PF00168 C2: C2 domain; Inter 99.4 6.1E-13 1.3E-17 112.3 8.8 81 10-103 1-85 (85)
114 PRK13912 nuclease NucT; Provis 99.4 5E-12 1.1E-16 123.5 15.8 140 203-423 33-174 (177)
115 KOG1011 Neurotransmitter relea 99.4 3.3E-13 7.1E-18 146.3 7.7 119 8-142 295-426 (1283)
116 PLN02223 phosphoinositide phos 99.4 3.9E-12 8.6E-17 140.3 14.2 123 7-141 408-536 (537)
117 cd00030 C2 C2 domain. The C2 d 99.3 5E-12 1.1E-16 108.7 10.3 99 10-121 1-102 (102)
118 COG5038 Ca2+-dependent lipid-b 99.3 3E-12 6.5E-17 148.4 11.1 135 5-154 433-569 (1227)
119 smart00239 C2 Protein kinase C 99.3 1.1E-11 2.3E-16 107.2 10.3 94 9-115 1-98 (101)
120 PLN02952 phosphoinositide phos 99.3 1.8E-11 4E-16 137.8 13.8 122 7-141 469-596 (599)
121 KOG0169 Phosphoinositide-speci 99.3 1.6E-11 3.4E-16 137.9 11.3 123 9-143 617-745 (746)
122 COG5038 Ca2+-dependent lipid-b 99.3 9.5E-12 2.1E-16 144.3 9.1 122 7-143 1039-1162(1227)
123 PLN02230 phosphoinositide phos 99.2 5.1E-11 1.1E-15 134.0 13.4 124 7-141 468-597 (598)
124 KOG1028 Ca2+-dependent phospho 99.2 9.5E-12 2E-16 136.8 6.2 108 7-129 297-412 (421)
125 cd08374 C2F_Ferlin C2 domain s 99.2 5.6E-11 1.2E-15 109.9 10.2 93 10-113 2-125 (133)
126 PLN02222 phosphoinositide phos 99.2 1.2E-10 2.6E-15 130.9 13.8 124 7-141 451-580 (581)
127 PRK01642 cls cardiolipin synth 99.2 4.4E-11 9.5E-16 134.5 10.4 143 196-423 311-454 (483)
128 PLN02228 Phosphoinositide phos 99.2 1.8E-10 4E-15 129.0 13.7 126 8-144 431-563 (567)
129 PF13091 PLDc_2: PLD-like doma 99.2 2E-10 4.3E-15 105.1 11.7 124 208-420 1-126 (126)
130 cd08689 C2_fungal_Pkc1p C2 dom 99.2 7.4E-11 1.6E-15 103.0 7.7 87 10-110 1-87 (109)
131 KOG1264 Phospholipase C [Lipid 99.0 1.1E-09 2.4E-14 122.1 10.7 126 5-147 1062-1194(1267)
132 PHA02820 phospholipase-D-like 99.0 2.1E-09 4.5E-14 118.6 12.8 152 205-423 220-380 (424)
133 PRK11263 cardiolipin synthase 99.0 2.3E-09 5E-14 117.8 12.6 135 203-422 206-341 (411)
134 PF00614 PLDc: Phospholipase D 98.9 5.5E-10 1.2E-14 74.2 1.4 27 321-358 2-28 (28)
135 KOG1031 Predicted Ca2+-depende 98.9 5.7E-09 1.2E-13 112.7 8.6 119 7-141 2-135 (1169)
136 KOG3603 Predicted phospholipas 98.8 2.7E-08 5.8E-13 105.7 11.1 169 188-423 265-439 (456)
137 KOG1328 Synaptic vesicle prote 98.7 4.1E-09 8.8E-14 116.6 2.0 91 7-110 946-1048(1103)
138 KOG1328 Synaptic vesicle prote 98.7 4.8E-09 1E-13 116.1 0.6 122 10-146 116-305 (1103)
139 KOG3603 Predicted phospholipas 98.6 1.1E-05 2.3E-10 86.3 21.9 253 204-568 73-337 (456)
140 COG1502 Cls Phosphatidylserine 98.4 1.9E-06 4.1E-11 96.0 11.5 133 206-423 273-409 (438)
141 cd00138 PLDc Phospholipase D. 98.4 2.8E-06 6.1E-11 82.3 10.9 59 491-567 19-77 (176)
142 KOG2059 Ras GTPase-activating 98.2 1.6E-06 3.4E-11 96.9 6.4 105 38-143 148-277 (800)
143 cd08683 C2_C2cd3 C2 domain fou 98.2 2.6E-06 5.6E-11 77.0 5.2 109 10-121 1-143 (143)
144 KOG1013 Synaptic vesicle prote 98.1 8.5E-07 1.8E-11 91.4 1.1 200 8-227 93-311 (362)
145 KOG1326 Membrane-associated pr 98.0 3E-06 6.6E-11 97.8 3.0 86 9-107 614-702 (1105)
146 KOG0905 Phosphoinositide 3-kin 97.9 7.1E-06 1.5E-10 95.7 3.6 104 6-122 1522-1634(1639)
147 PLN02964 phosphatidylserine de 97.9 5.4E-06 1.2E-10 95.0 2.5 102 6-127 52-157 (644)
148 PRK13912 nuclease NucT; Provis 97.9 5.6E-05 1.2E-09 73.9 9.3 52 492-567 32-83 (177)
149 PRK09428 pssA phosphatidylseri 97.9 7E-05 1.5E-09 83.4 10.8 139 203-422 251-407 (451)
150 PF13918 PLDc_3: PLD-like doma 97.8 0.00012 2.6E-09 70.7 10.0 69 188-265 71-140 (177)
151 KOG1013 Synaptic vesicle prote 97.8 2.2E-05 4.9E-10 81.1 4.5 100 7-121 232-339 (362)
152 PF07894 DUF1669: Protein of u 97.7 0.00013 2.7E-09 75.4 9.5 185 138-420 90-278 (284)
153 KOG1011 Neurotransmitter relea 97.7 9.4E-05 2E-09 81.7 8.2 100 9-122 1126-1236(1283)
154 KOG2060 Rab3 effector RIM1 and 97.5 9.4E-05 2E-09 77.9 5.0 108 6-125 267-381 (405)
155 smart00155 PLDc Phospholipase 97.5 7E-05 1.5E-09 50.0 2.7 25 322-357 3-27 (28)
156 KOG1265 Phospholipase C [Lipid 97.5 0.00041 8.9E-09 79.5 9.9 112 5-140 700-821 (1189)
157 cd08684 C2A_Tac2-N C2 domain f 97.2 0.00026 5.5E-09 59.9 2.9 96 11-121 2-103 (103)
158 PF13918 PLDc_3: PLD-like doma 96.9 0.028 6.1E-07 54.5 14.1 54 495-567 84-144 (177)
159 PF13091 PLDc_2: PLD-like doma 96.9 0.0029 6.4E-08 57.4 7.2 44 499-566 2-45 (126)
160 PRK05443 polyphosphate kinase; 96.7 0.006 1.3E-07 71.4 9.9 69 496-604 351-424 (691)
161 KOG1326 Membrane-associated pr 96.6 0.00058 1.3E-08 79.5 0.4 85 36-123 222-317 (1105)
162 PF10358 NT-C2: N-terminal C2 96.5 0.066 1.4E-06 50.0 13.4 120 9-148 8-141 (143)
163 KOG3837 Uncharacterized conser 96.2 0.004 8.6E-08 66.4 3.8 99 41-143 388-504 (523)
164 COG0855 Ppk Polyphosphate kina 95.7 0.76 1.6E-05 52.5 19.1 92 203-334 352-448 (696)
165 cd08398 C2_PI3K_class_I_alpha 95.7 0.07 1.5E-06 51.1 9.4 84 7-107 7-104 (158)
166 PF12416 DUF3668: Cep120 prote 95.5 0.16 3.5E-06 54.6 12.2 119 10-145 2-135 (340)
167 TIGR03705 poly_P_kin polyphosp 95.3 0.046 9.9E-07 63.8 8.1 50 204-270 505-558 (672)
168 PF13090 PP_kinase_C: Polyphos 95.0 1.2 2.7E-05 47.5 16.7 135 205-418 20-160 (352)
169 KOG1327 Copine [Signal transdu 94.9 0.053 1.1E-06 60.7 6.6 75 35-111 151-236 (529)
170 PLN03008 Phospholipase D delta 94.7 0.051 1.1E-06 63.9 6.3 75 191-265 554-633 (868)
171 cd08687 C2_PKN-like C2 domain 94.6 0.18 3.9E-06 43.3 7.7 86 39-141 7-92 (98)
172 PLN02352 phospholipase D epsil 94.6 0.11 2.4E-06 60.9 8.5 63 203-265 453-519 (758)
173 cd08693 C2_PI3K_class_I_beta_d 94.5 0.22 4.8E-06 48.5 9.4 71 7-92 7-86 (173)
174 COG3886 Predicted HKD family n 94.4 0.37 7.9E-06 47.0 10.3 140 202-421 38-178 (198)
175 KOG1329 Phospholipase D1 [Lipi 94.3 0.16 3.4E-06 59.8 9.0 136 203-360 566-727 (887)
176 PF11495 Regulator_TrmB: Archa 93.8 0.1 2.2E-06 53.3 5.6 49 203-267 10-58 (233)
177 cd08380 C2_PI3K_like C2 domain 93.1 0.58 1.2E-05 44.6 9.2 87 8-108 8-106 (156)
178 cd08397 C2_PI3K_class_III C2 d 93.0 0.38 8.3E-06 46.2 7.8 68 39-107 28-105 (159)
179 PLN02270 phospholipase D alpha 92.4 0.44 9.5E-06 56.2 8.7 144 203-360 499-683 (808)
180 KOG1452 Predicted Rho GTPase-a 92.3 0.24 5.3E-06 51.4 5.7 117 6-143 49-168 (442)
181 PF15627 CEP76-C2: CEP76 C2 do 92.2 0.84 1.8E-05 43.5 8.8 101 44-146 37-154 (156)
182 cd04012 C2A_PI3K_class_II C2 d 91.5 0.84 1.8E-05 44.3 8.2 89 6-106 6-116 (171)
183 PF00792 PI3K_C2: Phosphoinosi 91.2 0.84 1.8E-05 42.8 7.7 66 43-109 4-85 (142)
184 cd08399 C2_PI3K_class_I_gamma 91.1 2.4 5.2E-05 41.4 10.9 118 8-143 10-139 (178)
185 PLN02866 phospholipase D 90.7 0.5 1.1E-05 57.0 6.9 62 492-564 343-404 (1068)
186 PF15625 CC2D2AN-C2: CC2D2A N- 90.1 1.2 2.7E-05 43.1 7.9 69 41-109 37-106 (168)
187 PF14429 DOCK-C2: C2 domain in 89.7 0.94 2E-05 44.4 6.9 53 55-108 61-120 (184)
188 cd08695 C2_Dock-B C2 domains f 86.8 1.3 2.8E-05 43.6 5.7 51 55-106 55-111 (189)
189 KOG1327 Copine [Signal transdu 85.9 1.7 3.7E-05 49.0 6.7 84 53-140 41-130 (529)
190 KOG0694 Serine/threonine prote 85.7 0.23 5E-06 56.9 -0.2 97 40-146 27-125 (694)
191 cd08694 C2_Dock-A C2 domains f 84.8 2.1 4.6E-05 42.3 6.0 52 54-106 54-113 (196)
192 cd08679 C2_DOCK180_related C2 84.1 2.8 6.1E-05 40.9 6.7 52 56-108 55-115 (178)
193 PF11618 DUF3250: Protein of u 81.8 9.2 0.0002 34.2 8.4 92 44-141 2-104 (107)
194 smart00142 PI3K_C2 Phosphoinos 79.5 11 0.00023 33.1 8.0 69 10-91 13-90 (100)
195 cd08696 C2_Dock-C C2 domains f 78.6 6 0.00013 38.7 6.6 38 54-92 55-95 (179)
196 PF07894 DUF1669: Protein of u 77.1 17 0.00038 38.1 9.9 51 491-565 132-183 (284)
197 PF11495 Regulator_TrmB: Archa 76.1 6.6 0.00014 40.0 6.5 51 491-565 8-58 (233)
198 KOG3964 Phosphatidylglycerolph 75.4 3.6 7.9E-05 44.5 4.4 129 202-362 38-173 (469)
199 KOG4269 Rac GTPase-activating 75.1 1.3 2.8E-05 52.2 1.1 116 5-146 756-886 (1112)
200 cd05137 RasGAP_CLA2_BUD2 CLA2/ 75.1 3.2 7E-05 45.7 4.2 44 98-143 1-45 (395)
201 cd08697 C2_Dock-D C2 domains f 73.7 10 0.00022 37.4 6.8 39 53-92 56-97 (185)
202 PF13090 PP_kinase_C: Polyphos 64.1 11 0.00024 40.5 5.1 44 542-604 51-94 (352)
203 PF06219 DUF1005: Protein of u 64.0 57 0.0012 35.9 10.4 113 39-156 34-178 (460)
204 PTZ00447 apical membrane antig 50.2 96 0.0021 33.3 9.1 93 42-139 75-170 (508)
205 COG3139 Uncharacterized protei 50.0 22 0.00047 29.9 3.5 39 537-585 8-51 (90)
206 PF07023 DUF1315: Protein of u 49.3 25 0.00054 30.5 3.9 37 539-585 8-49 (93)
207 KOG3964 Phosphatidylglycerolph 48.3 31 0.00066 37.7 5.2 55 493-567 39-93 (469)
208 COG0855 Ppk Polyphosphate kina 45.0 45 0.00098 38.7 6.2 44 542-604 385-428 (696)
209 COG1489 SfsA DNA-binding prote 43.6 76 0.0017 32.4 7.0 23 243-265 190-212 (235)
210 KOG3543 Ca2+-dependent activat 40.9 1.5E+02 0.0032 34.4 9.2 117 5-141 338-458 (1218)
211 KOG2419 Phosphatidylserine dec 40.6 2.5 5.4E-05 48.1 -4.3 77 8-95 280-358 (975)
212 KOG1466 Translation initiation 34.1 61 0.0013 33.5 4.6 77 496-604 107-183 (313)
213 PF14186 Aida_C2: Cytoskeletal 31.6 4.3E+02 0.0093 25.1 9.5 74 40-113 30-116 (147)
214 PF14924 DUF4497: Protein of u 31.0 91 0.002 27.9 4.8 58 83-143 30-105 (112)
215 TIGR00230 sfsA sugar fermentat 25.6 1.7E+02 0.0036 30.0 6.2 55 205-265 159-213 (232)
216 PF03749 SfsA: Sugar fermentat 25.1 2.3E+02 0.005 28.6 7.0 23 243-265 179-201 (215)
217 PF13289 SIR2_2: SIR2-like dom 24.4 2.9E+02 0.0063 24.8 7.2 64 204-299 75-142 (143)
218 COG2044 Predicted peroxiredoxi 23.8 1.7E+02 0.0036 26.8 5.1 59 202-264 17-81 (120)
219 KOG3698 Hyaluronoglucosaminida 21.5 40 0.00087 38.4 0.9 92 196-299 55-155 (891)
220 KOG3508 GTPase-activating prot 21.2 40 0.00087 40.8 0.8 95 10-123 104-203 (932)
221 PF09565 RE_NgoFVII: NgoFVII r 21.2 3.8E+02 0.0083 28.5 8.0 27 322-356 79-106 (296)
No 1
>PLN02270 phospholipase D alpha
Probab=100.00 E-value=1.2e-158 Score=1329.52 Aligned_cols=660 Identities=87% Similarity=1.451 Sum_probs=620.1
Q ss_pred CcccceeEEEEEEEEEeecCCCCCCCCccccccC------CCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEE
Q 006070 1 MAQILLHGTLHVTIYEVDQLESGGGGNFFTKLLG------GLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFH 74 (662)
Q Consensus 1 ~~~~~~~G~L~V~I~eA~~L~~~~~~~~~~~~~~------~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~ 74 (662)
|+++||||+|+|||+||++|++++..++|+++.+ +...+++||||+|.|++.+++||+|+.|+..||+|||+|+
T Consensus 1 ~~~~llhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~ 80 (808)
T PLN02270 1 MAQILLHGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFH 80 (808)
T ss_pred CcceeeecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceE
Confidence 7888999999999999999998543445544321 2345789999999999999999999998567999999999
Q ss_pred EeccCCCceEEEEEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeeccccchhhhhcc
Q 006070 75 IYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGI 154 (662)
Q Consensus 75 ~~v~~~~~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~~~~W~~gI 154 (662)
++|+|.++.|+|+|+|.|.++..+||.+.||+++|.+|+.++.||+|++.+|||++++.+|||+++|+|+..++.|.+||
T Consensus 81 i~~ah~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~~~~~~~gv 160 (808)
T PLN02270 81 IYCAHMASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTKDRNWGRGI 160 (808)
T ss_pred EeeccCcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEcccCcchhccc
Confidence 99999999999999999999999999999999999999999999999999999998999999999999999999999999
Q ss_pred cCCCCCCCCCcccccccCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEec
Q 006070 155 RSAKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVR 234 (662)
Q Consensus 155 ~~~~~~g~~~~~~p~~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r 234 (662)
+++++.|||.+|||+++||+||||||||++|+|.|.|+|.+|+.|.+.+||+++++||.+||++|||++|+|+|+++|+|
T Consensus 161 ~~~~~~gvp~t~f~~r~g~~vtlyqdahv~~~~~p~i~l~~g~~~~~~~cwedi~~AI~~Ar~~IyI~GW~~d~~i~LvR 240 (808)
T PLN02270 161 RSAKFPGVPYTFFSQRQGCKVSLYQDAHIPDNFVPKIPLAGGKNYEPHRCWEDVFDAITNAKHLIYITGWSVYTEISLVR 240 (808)
T ss_pred CCcCcCCCCCcccccCCCCeeEEeccccCCCCCCCccccCCCcccchhhhHHHHHHHHHhhhcEEEEEEeecCCCceEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCccc
Q 006070 235 DSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQ 314 (662)
Q Consensus 235 ~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~ 314 (662)
++..+.++...+|+++|++||++||+|+||+||+.++..+++..|+|.||++++.++|++++|+|++++|+|+.+.+|++
T Consensus 241 d~~~p~~~~~~~LGeLLk~KA~eGV~V~iLvWDd~ts~~~~k~~g~m~thd~~t~~~f~~~~V~~~L~~r~P~~~~~~~~ 320 (808)
T PLN02270 241 DSRRPKPGGDVTIGELLKKKASEGVRVLLLVWDDRTSVDLLKKDGLMATHDEETENFFRGTDVHCILCPRNPDDGGSIVQ 320 (808)
T ss_pred CCCCCCCCCcchHHHHHHHHhcCCCEEEEEEEcCcccchhhccccccccCHHHHHHHhccCCceEEEcCCCcccccceee
Confidence 87655555668999999999999999999999999988777778999999999999999999999999999998888888
Q ss_pred ccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCC
Q 006070 315 DIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPR 394 (662)
Q Consensus 315 ~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr 394 (662)
+...++.++||||+||||++.|++.+++|+++|||||+|||+|||||++|++|++|++.|++||+||+|.+++++.++||
T Consensus 321 ~~~~~~~~SHHQKiVVID~~~~~~~~~~r~iVAFVGGIDLc~GRWDT~~H~lf~~Ldt~h~~Df~~p~~~~~~~~~g~Pr 400 (808)
T PLN02270 321 DLQISTMFTHHQKIVVVDSEMPNGGSQRRRIVSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFTGASITKGGPR 400 (808)
T ss_pred ccccccccccceeEEEEccCCccccccccceEEEEcceeccCCcccCccccccccccccccccccCcccccccccCCCCC
Confidence 88889999999999999999888777899999999999999999999999999999999999999999998888889999
Q ss_pred CCeeeeeeeeeCHHHHHHHHHHHHHHHhhcCCcccccccccCcccCCCCCCCCCCCCCCceeeEEeeccCCcCCCCCCCh
Q 006070 395 EPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETP 474 (662)
Q Consensus 395 ~pWhDv~~~v~Gpaa~dl~~~F~qrW~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~ 474 (662)
+||||+|++|+||+|++|+.+|++||+.++++.++....+++++..|+++...|++.++|+||+|||++.+++++||..+
T Consensus 401 ~PWhDvh~rVeGPaa~dL~~~F~~rW~~atg~~ll~~~~~~~~~~~P~~~~~~p~d~~~w~VQvfRSid~g~a~~~P~~~ 480 (808)
T PLN02270 401 EPWHDIHSRLEGPIAWDVLFNFEQRWSKQGGKDILVQLRELEDVIIPPSPVMFPDDHEVWNVQLFRSIDGGAAFGFPETP 480 (808)
T ss_pred CCeEEEEEEEECHHHHHHHHHHHHHHHhhcCccchhhhcccccccCCCCcccCCCcCCccccceeecccchhhccCCCCc
Confidence 99999999999999999999999999999988766555555665667665556778899999999999999999999999
Q ss_pred hHHhhcccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcC
Q 006070 475 EDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAG 554 (662)
Q Consensus 475 ~~~~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g 554 (662)
+++++.|+++|++...++||+.||++||++||||||||||||++++++|+++++++++.++.|+||+||++||++|++++
T Consensus 481 ~~~~~~~lv~g~~~~~~rsI~~aYi~AI~~A~~~IYIENQYF~sss~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~ 560 (808)
T PLN02270 481 EAAAEAGLVSGKDNIIDRSIQDAYIHAIRRAKDFIYIENQYFLGSSFAWSADGIKPEDINALHLIPKELSLKIVSKIEAG 560 (808)
T ss_pred chhhhcceeccCCCchhhHHHHHHHHHHHhhhhEEEeehhhhhhhhhhhcccccccccccccccchHHHHHHHHHHHhCC
Confidence 99999999999988889999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCccceeEEeecCCcccccCCCCCCCCCCC
Q 006070 555 ERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPE 634 (662)
Q Consensus 555 ~~~~V~Iv~P~~peG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~~lr~~~~~~~~~~~~~~~~~ 634 (662)
++|+||||+|+||||.+++.++|+||+||++||+||+.+|+++|+++|+..+|+|||+||||||||....|++.|.+.|.
T Consensus 561 e~f~VyIViP~~peG~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~ 640 (808)
T PLN02270 561 EKFTVYVVVPMWPEGIPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPE 640 (808)
T ss_pred CCCEEEEEECCCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCc
Confidence 99999999999999999999999999999999999999999999999997799999999999999999889999998999
Q ss_pred CchHHHHHhhcceeeEEEeeceeeEe
Q 006070 635 DDSDYLRAQEARRFMIYVHAKMMIGN 660 (662)
Q Consensus 635 ~~~~~~~~~~~~~~~iYvHsK~mIv~ 660 (662)
.+++|.++|++||||||||||+||||
T Consensus 641 ~~~~~~~aq~~rr~~I~vH~K~~ivD 666 (808)
T PLN02270 641 PDTDYIRAQEARRFMIYVHTKMMIVD 666 (808)
T ss_pred ccchhhhhhhccceeEEEeeeEEEEc
Confidence 99999999999999999999999998
No 2
>PLN03008 Phospholipase D delta
Probab=100.00 E-value=1.2e-155 Score=1303.82 Aligned_cols=637 Identities=46% Similarity=0.825 Sum_probs=578.8
Q ss_pred cceeEEEEEEEEEeecCCCCCCCCcccc-c---------cC-----------------------CCCCCCCCcEEEEEEC
Q 006070 4 ILLHGTLHVTIYEVDQLESGGGGNFFTK-L---------LG-----------------------GLGKGGSELYATIDLE 50 (662)
Q Consensus 4 ~~~~G~L~V~I~eA~~L~~~~~~~~~~~-~---------~~-----------------------~~~~g~~DPYv~v~l~ 50 (662)
+||||+|+|||+||++|++++ +|++ + ++ ....+++||||+|.|+
T Consensus 10 ~llhg~l~~~i~ea~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg 86 (868)
T PLN03008 10 MLLHGDLDLKIVKARRLPNMD---MFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVP 86 (868)
T ss_pred EEeecccEEEEEEcccCCchh---HHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEEC
Confidence 689999999999999999853 3322 0 00 0114689999999999
Q ss_pred CeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCC
Q 006070 51 KARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPIS 130 (662)
Q Consensus 51 ~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k 130 (662)
+++++||+|+++ ++||+|||+|+|+|+++.+.|+|+|+|+|.+++++||++.|||++|..|+.++.|++|++.+++|++
T Consensus 87 ~~rv~RTrVi~n-~~NPvWNE~F~f~vah~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k 165 (868)
T PLN03008 87 QATLARTRVLKN-SQEPLWDEKFNISIAHPFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPK 165 (868)
T ss_pred CcceeeEEeCCC-CCCCCcceeEEEEecCCCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCC
Confidence 888889999998 9999999999999999889999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEEeeccccchhhhhcccC-CCCCCCCCcccccccCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHH
Q 006070 131 SGSKIHVKLQYFDVTKDRSWARGIRS-AKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIF 209 (662)
Q Consensus 131 ~~G~i~l~l~f~~~~~~~~W~~gI~~-~~~~g~~~~~~p~~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~ 209 (662)
++++|||+|+|+|+.+++.|.+||++ +++.|||.+|||+|+||+|+||||||++|+|.|.|+|.+|+.|.+++|||+|+
T Consensus 166 ~~~kl~v~lqf~pv~~~~~~~~gv~~~~~~~gvp~t~Fp~r~g~~VtlYqdAhv~d~~~p~i~l~~g~~y~~~rcwedi~ 245 (868)
T PLN03008 166 AETAIFIDMKFTPFDQIHSYRCGIAGDPERRGVRRTYFPVRKGSQVRLYQDAHVMDGTLPAIGLDNGKVYEHGKCWEDIC 245 (868)
T ss_pred CCcEEEEEEEEEEccccccccccccCCcCCCCCCCccccCCCCCEeEEeccCCCCCCCCCccccCCCccccccccHHHHH
Confidence 99999999999999999999999988 59999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccc--cccccCccCCChHH
Q 006070 210 DAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVS--LLKKDGLMATHDEE 287 (662)
Q Consensus 210 ~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~--~~~~~~~~~~~~~~ 287 (662)
+||++||++|||++||++|++||+|++..|. +.+.+|++||++||+|||+|+|||||+++|.. .+++.|+|+||+++
T Consensus 246 ~AI~~Ak~~IyI~gWsl~~ei~L~R~~~~~~-~~~~~Lg~LLk~KA~eGVrV~ilvwdd~ts~~~~~~~~~g~m~thdee 324 (868)
T PLN03008 246 YAISEAHHMIYIVGWSIFHKIKLVRETKVPR-DKDMTLGELLKYKSQEGVRVLLLVWDDKTSHDKFGIKTPGVMGTHDEE 324 (868)
T ss_pred HHHHhhhheEEEeceeecceeEEecCCCCCC-CCCccHHHHHHHHHHCCCEEEEEEecccccccccccccccccccccHH
Confidence 9999999999999999999999999975332 24789999999999999999999999999873 36788999999999
Q ss_pred HHhhhcCCCcEEEecCCCCCCCCCccccc-----------ccccccCCccceEEEcCCCCCCCccccceeEEeccccCcC
Q 006070 288 TEKFFQGTDVHCILCPRNPDDGGSFIQDI-----------QISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCD 356 (662)
Q Consensus 288 ~~~~l~~~~v~~~~~~r~p~~~~~~~~~~-----------~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~ 356 (662)
+.++|++++|+|+++||+++...+++++. ..+++|+||||+||||++.++ ++|+++|||||+|||+
T Consensus 325 t~~~f~h~~v~~~l~pr~~~~~~~~~~~~~~~~~~iy~~~~~~~~~sHHQK~VVID~~~~~---~~r~~vAFvGGiDLc~ 401 (868)
T PLN03008 325 TRKFFKHSSVICVLSPRYASSKLGLFKQQASPIFSIYVMTVVGTLFTHHQKCVLVDTQAVG---NNRKVTAFIGGLDLCD 401 (868)
T ss_pred HHHhhcCCCeeEEECCCccccccchhhccccccccccccccccccccccceEEEEccCCCC---CccceEEEEcceeccC
Confidence 99999999999999999999888888773 455889999999999997554 4799999999999999
Q ss_pred ccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHHHHHHHHHHHHHHHhhcCC----------
Q 006070 357 GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGK---------- 426 (662)
Q Consensus 357 ~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW~~~~~~---------- 426 (662)
|||||++|++++++++.+.+||+||++++ +.++|++||||+|++|+||||++|+.+|.+||+++++.
T Consensus 402 gRwDT~~H~l~~~l~t~~~~D~~np~~~~---~~~~p~~PWHDvh~rVeGPaV~dL~~~F~qRW~~aTg~~~~~~~~k~~ 478 (868)
T PLN03008 402 GRYDTPEHRILHDLDTVFKDDFHNPTFPA---GTKAPRQPWHDLHCRIDGPAAYDVLINFEQRWRKATRWKEFSLRLKGK 478 (868)
T ss_pred CccCCcCCCccccccccccccccCccccC---CCCCCCCCeEEEEEEEECHHHHHHHHHHHHHHHHhhCccccccccccc
Confidence 99999999999999999999999998764 45679999999999999999999999999999999872
Q ss_pred -----cccccccccCcccCCCC--------------CCCCC---CCCCCceeeEEeeccCCcCCCCCCChhHHhhccccc
Q 006070 427 -----DVLVHLRELGDIIIPPS--------------PVMYP---DDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVS 484 (662)
Q Consensus 427 -----~~l~~~~~~~~~~~P~~--------------~~~~~---~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~ 484 (662)
+.|+.+.++++++.|.. +...+ +++++|.+|+|||++.|++++||+.+++++..+++|
T Consensus 479 ~~~~~d~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~w~vQifRSId~~sa~g~P~~~~~~~~~~l~~ 558 (868)
T PLN03008 479 THWQDDALIRIGRISWILSPVFKFLKDGTSIIPEDDPCVWVSKEDDPENWHVQIFRSIDSGSVKGFPKYEDEAEAQHLEC 558 (868)
T ss_pred cccccchhcchhhcccccCCCccccccccccccCCCCccCccccCCCCccccceeeecCchhhcCCCCCcchhhhhcccc
Confidence 34556666666665531 11112 467899999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEec
Q 006070 485 GKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVP 564 (662)
Q Consensus 485 g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P 564 (662)
|++..+|+|||+||++||++||||||||||||++++++|+++ ++.++.|+||+||++||++|++++++|+||||+|
T Consensus 559 gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~----~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IViP 634 (868)
T PLN03008 559 AKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSY----RDAGADNLIPMELALKIVSKIRAKERFAVYVVIP 634 (868)
T ss_pred ccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccc----cccccccchhHHHHHHHHHHHhCCCCCEEEEEEC
Confidence 999999999999999999999999999999999999999876 6889999999999999999999999999999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCccceeEEeecCCcccccCCCCCCCCCCCCchHHHHHhh
Q 006070 565 MWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQE 644 (662)
Q Consensus 565 ~~peG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (662)
+||||.+++.++|+||+||++||+||+.+|+++|+++|.+.+|+|||+||||||||...+ .+.+..++.|..+|+
T Consensus 635 ~~peG~~~sg~vq~Il~wq~~TM~~~~~~I~~~L~~~~~d~~p~dyl~fy~L~~~e~~~~-----~~~~~~~~~~~~a~~ 709 (868)
T PLN03008 635 LWPEGDPKSGPVQEILYWQSQTMQMMYDVIAKELKAVQSDAHPLDYLNFYCLGKREQLPD-----DMPATNGSVVSDSYN 709 (868)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccCEEEEecccccccccC-----CCCCCCCchhhhhhh
Confidence 999999999999999999999999999999999999988778999999999999987643 224556778889999
Q ss_pred cceeeEEEeeceeeEe
Q 006070 645 ARRFMIYVHAKMMIGN 660 (662)
Q Consensus 645 ~~~~~iYvHsK~mIv~ 660 (662)
+||||||||||+||||
T Consensus 710 ~rr~~IYvHsK~~ivD 725 (868)
T PLN03008 710 FQRFMIYVHAKGMIVD 725 (868)
T ss_pred ccceeEEEeeeEEEEC
Confidence 9999999999999998
No 3
>PLN02352 phospholipase D epsilon
Probab=100.00 E-value=2.3e-144 Score=1212.94 Aligned_cols=607 Identities=44% Similarity=0.816 Sum_probs=543.8
Q ss_pred ccceeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC-
Q 006070 3 QILLHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA- 81 (662)
Q Consensus 3 ~~~~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~- 81 (662)
+.||||+|++||+||+-+. +.|... +....+ .||||+|.|++.+++|| ++ ..||+|||+|+++|+|.+
T Consensus 5 ~~~lhg~l~~~i~~~~~~~-----~~~~~~-~~~~~~-~~~y~tv~~~~~~v~rt---~~-~~~p~w~e~f~i~~ah~~~ 73 (758)
T PLN02352 5 QKFFHGTLEATIFDATPYT-----PPFPFN-CIFLNG-KATYVTIKIGNKKVAKT---SH-EYDRVWNQTFQILCAHPLD 73 (758)
T ss_pred ccccccceEEEEEEeeehh-----hccccc-ccccCC-CCceEEEEeCCcEEecC---CC-CCCCccccceeEEeeeecC
Confidence 3589999999999999433 222200 001122 39999999999999999 55 669999999999999999
Q ss_pred ceEEEEEEecCCCCCceeEEEEeeeeeecCCce-EEEEEeccCCCCCCCCCCCceEEEEEeeccccchhhhhcccCCCCC
Q 006070 82 SNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEE-VDKWVEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGIRSAKYP 160 (662)
Q Consensus 82 ~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~-~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~~~~W~~gI~~~~~~ 160 (662)
+.|+|+|+| +..+||.+.||+++|.+|+. ++.||+|++.+|||+++ .+||++++|+|++.++.|.+||.++++.
T Consensus 74 ~~~~f~vk~----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 148 (758)
T PLN02352 74 STITITLKT----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPE-LKLRFMLWFRPAELEPTWCKILENGSFQ 148 (758)
T ss_pred CcEEEEEec----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCC-CEEEEEEEEEEhhhCcchhhcccCCCcC
Confidence 799999999 57999999999999999976 99999999999999865 8999999999999999999999999999
Q ss_pred CCCCcccccccCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCC
Q 006070 161 GVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPK 240 (662)
Q Consensus 161 g~~~~~~p~~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~ 240 (662)
|||.+|||+++||+|+||||+|.+|+|.|.+.| .|.+++||++|++||.+||++|||++|+|+|+++|+|++..+.
T Consensus 149 gvp~~~f~~r~g~~v~lyqdah~~~~~~p~i~l----~~~~~~~f~al~eAI~~Ar~sI~I~gW~~d~~i~L~R~~~~~~ 224 (758)
T PLN02352 149 GLRNATFPQRSNCHVILYQDAHHCSTFQPPVDL----CGSPRKLWEDVYKAIEGAKHLIYIAGWSFNPKMVLVRDPETDI 224 (758)
T ss_pred CcCCcccccCCCCEEEEEecCCCccccCCccee----ecCHHHHHHHHHHHHHhhccEEEEEEEEecCCceeccCccccc
Confidence 999999999999999999999999999999998 4556689999999999999999999999999999999875443
Q ss_pred C-CCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccc
Q 006070 241 P-GGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQIS 319 (662)
Q Consensus 241 ~-~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~ 319 (662)
+ +.+.+|+++|++||+|||+|+||+||+.++.+.++..|+|.+|+++++++|++++|+|++++|.+. ..+
T Consensus 225 p~~~g~~LgdLLk~KA~eGV~VrLLvWDd~~s~~~~~~~g~m~th~~~~~~~f~h~~V~~~l~pr~~~---------~~~ 295 (758)
T PLN02352 225 PHARGVKLGELLKRKAEEGVAVRVMLWDDETSLPIIKNKGVMGTHDEDAFAYFKHTKVVCKLCPRLHK---------KFP 295 (758)
T ss_pred ccccchHHHHHHHHHHHCCCEEEEEEEcCCCcccccccccccccchHHHHhhccCCceEEeecccccc---------ccc
Confidence 3 357899999999999999999999999999887788889999999999999999999999988653 456
Q ss_pred cccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCCCCcccccCCCc-CCCCCCCCCCCCCCcCCCCCCCCee
Q 006070 320 AMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTA-HHDDFHQPNFPGASIEKGGPREPWH 398 (662)
Q Consensus 320 ~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l~~~~~~~-~~~d~~~~~~~~~~~~~~~pr~pWh 398 (662)
+.|+||||+||||++++++ +++|+++|||||+|||+|||||++|++++++++. |++||+|++|.++.++.++||||||
T Consensus 296 ~~~SHHQK~VVID~~~~~~-~~~r~~vAFVGGIDLc~GRwDT~~H~l~d~l~t~~~~~Df~~~~~~g~~~~~g~PR~PWH 374 (758)
T PLN02352 296 TLFAHHQKTITVDTRANDS-ISEREIMSFVGGLDLCDGRYDTEEHSLFRTLNTESHCQDFYQTSIAGAKLQKGGPREPWH 374 (758)
T ss_pred cccccccceEEEccCCCCC-ccccceEEEEcceeccCCccCCccCCcccccccccccccccccccccccCCCCCCCCCcE
Confidence 7899999999999986642 3579999999999999999999999999999876 6799999999988888899999999
Q ss_pred eeeeeeeCHHHHHHHHHHHHHHHhhcCCcccccccccCcccC-CCCCCCCCCCCCCceeeEEeeccCCcCCCCCCChhHH
Q 006070 399 DIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIII-PPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDA 477 (662)
Q Consensus 399 Dv~~~v~Gpaa~dl~~~F~qrW~~~~~~~~l~~~~~~~~~~~-P~~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~ 477 (662)
|+||+|+||||+||.+||+||||++++...+++...++++.. |..+ +.+.++|+||++||++.|++.+||.
T Consensus 375 Dvh~~V~GpAA~Dv~~~F~qRW~~~~~~~~l~p~~~~~~~~~~p~~~---~~~~~~w~VQv~RSid~~sa~~~P~----- 446 (758)
T PLN02352 375 DAHACIVGEAAWDVLTNFEQRWTKQCNPSVLVPTSSIRNLVHQPGSS---ESNNRNWKVQVYRSIDHVSASHMPR----- 446 (758)
T ss_pred eEEEEEECHHHHHHHHHHHHHHhhccCccccCCcccccccccCCCCC---cccCCcccceEEEecCccccccCCC-----
Confidence 999999999999999999999999988766555443333222 2111 2357899999999999999999984
Q ss_pred hhcccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCce
Q 006070 478 ARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERF 557 (662)
Q Consensus 478 ~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~ 557 (662)
+...|+||++||++||++||||||||||||++++++|+.+ ++.++.|+||++|++||++|++++++|
T Consensus 447 ---------~~~~erSIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~----~~~~~~N~I~~eIa~kI~~kir~~e~f 513 (758)
T PLN02352 447 ---------NLPVERSIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKD----NHCGCTNLIPIEIALKIASKIRAKERF 513 (758)
T ss_pred ---------CCchhhHHHHHHHHHHHhhhhEEEEehhhhhccccccccc----cccchhcchHHHHHHHHHHHHhCCCCC
Confidence 2346899999999999999999999999999999999876 678999999999999999999999999
Q ss_pred EEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCccceeEEeecCCcccccCCCCCCCCCCCCch
Q 006070 558 TVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCLGNREVKRSGEYEPAERPEDDS 637 (662)
Q Consensus 558 ~V~Iv~P~~peG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~~lr~~~~~~~~~~~~~~~~~~~~ 637 (662)
+||||+|++|||.+++.++|+||+||++||+||+.+|.++|+++|...+|+|||+||||||||.+..|++.+...|..++
T Consensus 514 ~V~IViP~~PeG~~e~~~vq~il~wq~~TM~~~y~~I~~~L~~~g~~~~P~dYl~F~cL~n~e~~~~g~~~~~~~p~~~~ 593 (758)
T PLN02352 514 AVYILIPMWPEGVPESEPVQDILHWTRETMAMMYKLIGEAIQESGEPGHPRDYLNFFCLANREEKRKGEFVPPYSPHQKT 593 (758)
T ss_pred EEEEEECCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCChhHheeeecccccccccCCccccccCCCCCc
Confidence 99999999999999999999999999999999999999999999987789999999999999999889998888899999
Q ss_pred HHHHHhhcceeeEEEeeceeeEe
Q 006070 638 DYLRAQEARRFMIYVHAKMMIGN 660 (662)
Q Consensus 638 ~~~~~~~~~~~~iYvHsK~mIv~ 660 (662)
+|+.+|++|||||||||||||||
T Consensus 594 ~~~~~~~~rr~~IYVHSKlMIVD 616 (758)
T PLN02352 594 QYWNAQKNRRFMVYVHSKLMIVD 616 (758)
T ss_pred hhhhcccccceeEEEeeeEEEEc
Confidence 99999999999999999999998
No 4
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=100.00 E-value=9e-132 Score=1104.66 Aligned_cols=596 Identities=49% Similarity=0.811 Sum_probs=526.7
Q ss_pred ccceeEEEEEEEEEeecCCCCCCCC--------ccc---cc---------cCCCC---------CCCCCcEEEEEECCee
Q 006070 3 QILLHGTLHVTIYEVDQLESGGGGN--------FFT---KL---------LGGLG---------KGGSELYATIDLEKAR 53 (662)
Q Consensus 3 ~~~~~G~L~V~I~eA~~L~~~~~~~--------~~~---~~---------~~~~~---------~g~~DPYv~v~l~~~~ 53 (662)
..|+||.|+++|++|..+.++.-.. .+. +. ..... ..+.++|+++.|....
T Consensus 71 v~L~hG~l~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~e~Ylt~~l~~~~ 150 (887)
T KOG1329|consen 71 VELLHGTLDWTIKKATKLHNMLHFHLHARLLGESFPDLGRLNINDNHDEKPSGPRSSLNSSMEKRKTLENYLTVVLHKAR 150 (887)
T ss_pred eeeecCcEEEEEEecchhhhHHhHHHhhhhhcccccccccccccccccccCCCccCCcccchhhhhhccchheeeechhh
Confidence 3589999999999999998521000 000 00 00011 1236999999999998
Q ss_pred eeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCC
Q 006070 54 VGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSG 132 (662)
Q Consensus 54 ~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~ 132 (662)
+.+|....+.-.+|.|++.|++.+++....+.++|.+.+..| ..++|.+++|...+.+|..++.|+++++.++++++++
T Consensus 151 ~~~t~~~~~f~e~s~~~f~~~~~~~h~~g~v~~~~~~~~~~G~s~~w~~v~~s~~~~~~~~~~~~~~~Il~~d~~~~~~~ 230 (887)
T KOG1329|consen 151 YRRTHVIYEFLENSRWSFSFDIGFAHKAGYVIFRVKGARVPGWSKRWGRVKISFLQYCSGHRIGGWFPILDNDGKPHQKG 230 (887)
T ss_pred hhchhhhhcccccchhhhhccccccccccEEEEeecCCccccceeEEEEeccchhhhhccccccceeeeeccCCccccCC
Confidence 899999988348999999999999999999999999999999 8999999999999999999999999999999998888
Q ss_pred CceEEEEEeeccccchhhhhcccC-CCCCCCCCcccccccCceeeEcccCCCCCCCCCceecCCCcccCCc-chHHHHHH
Q 006070 133 SKIHVKLQYFDVTKDRSWARGIRS-AKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPH-RCWEDIFD 210 (662)
Q Consensus 133 G~i~l~l~f~~~~~~~~W~~gI~~-~~~~g~~~~~~p~~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~-~~~~~l~~ 210 (662)
..+++.+.|++.+.+..|..++.. +++.|++.++|++++||.|++|||+||++||+|++++++|+||+++ +||+++++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~g~gv~~~qd~Hr~~sf~P~r~~~~~kw~vd~~~~~edi~d 310 (887)
T KOG1329|consen 231 SNESLRLGFTPMEKDRNLKLGCKSGRSFRGWPGTIFPQRKGCGVTLYQDAHRFDSFAPVRTLDGGKWFVDGKKYWEDVAD 310 (887)
T ss_pred cccceEEeeEeechhhhhhheeccccccCCccceeeehhccCceeeeecccccCCcCCcccCCCceEEEchhhHHHHHHH
Confidence 899999999999999999999988 9999999999999999999999999999999999999999988876 59999999
Q ss_pred HHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCccCCChHHHHh
Q 006070 211 AITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEK 290 (662)
Q Consensus 211 aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~~~~~~~~~ 290 (662)
||++||++|||++||++|++||+|+...+ .+++|+++||+||++||+|+|||||+++++.. .+||.+++..
T Consensus 311 AI~~Ar~~IyItgWwl~pel~L~Rp~~~~---~~~rLdelLK~KAeeGVrV~ilv~kdv~s~~~------i~S~~~k~~l 381 (887)
T KOG1329|consen 311 AIENARREIYITGWWLSPELYLVRPPKGP---NDWRLDELLKRKAEEGVRVLILVWKDVTSALG------INSHYEKTRL 381 (887)
T ss_pred HHHhhhhEEEEeccccCceEEEEccCCCC---CceEHHHHHHHHHhCCcEEEEEEeccchhccc------cCchhHHHHH
Confidence 99999999999999999999999988753 58999999999999999999999999998754 3588899999
Q ss_pred hhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCCCCcccccC
Q 006070 291 FFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTL 370 (662)
Q Consensus 291 ~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l~~~~ 370 (662)
++++++|+|.+||+++..+. .++|+||||+||||++ +|||||+|||+|||||++|+|++++
T Consensus 382 ~~lH~nV~vlr~P~~~~~~~--------~~~wtHHeK~VVVD~~-----------v~fvGGlDLC~GRYDT~eH~L~d~~ 442 (887)
T KOG1329|consen 382 FFLHPNVKVLRCPRHPGSGP--------TTLWTHHEKLVVVDQE-----------VAFVGGLDLCDGRYDTPEHPLFDTL 442 (887)
T ss_pred hhcCCCeEEEECCCCcCCCC--------ceEEecceEEEEEcce-----------eccccceeccccccCCccccccccc
Confidence 99999999999999887431 3689999999999999 9999999999999999999999999
Q ss_pred CCcCCCCCCCCCCCCCC--cCCCCCCCCeeeeeeeeeCHHHHHHHHHHHHHHHhhcCC-----cccccccccCcccCCCC
Q 006070 371 DTAHHDDFHQPNFPGAS--IEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGK-----DVLVHLRELGDIIIPPS 443 (662)
Q Consensus 371 ~~~~~~d~~~~~~~~~~--~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW~~~~~~-----~~l~~~~~~~~~~~P~~ 443 (662)
+++|++||+||+|.|+. ++.++|||||||+||+|.||+|+||++||+||||+++.. +.+..+...+++..|+.
T Consensus 443 ~~~~gkDy~n~~~~~~~~~dr~~~PRmPWHDvh~~v~G~~ArDvarhF~QRWn~~~~~K~~~~~~~p~L~p~~~~~~~~~ 522 (887)
T KOG1329|consen 443 QTWHGKDYHNPNFKDFVDIDRKGGPRMPWHDVHCKVDGPAARDVARHFEQRWNKQKREKKPYDDSLPLLLPISDITGPSE 522 (887)
T ss_pred cccccccccCcccccchhcccCCCCCCCceeeeeeeeChhHHHHHHHHHHHHHHHhcccCCCCccceeecChhhhcCCCC
Confidence 99999999999999865 789999999999999999999999999999999998752 12211222223333333
Q ss_pred CCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhcccccCCCCcchhHHHHHHHHHHHhccceEEEeecccccccccc
Q 006070 444 PVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAW 523 (662)
Q Consensus 444 ~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w 523 (662)
+ .+++++.|.+|+++|++.+++.+ ++.+.++|++|++...+|+|||+||+++|++||||||||||||+++++.|
T Consensus 523 ~--~~~~~e~~~~q~f~si~~gs~~~----~qvlrs~g~wS~g~~~~e~SIq~AYv~~Ir~a~hFIYIENQfFi~ss~~~ 596 (887)
T KOG1329|consen 523 P--NEEDPESWHVQVFRSIDGGSVAG----PQVLRSAGLWSGGINEIEDSIQNAYVKAIRNAEHFIYIENQFFIGSSFNW 596 (887)
T ss_pred c--cccccccccccceeeccCCcccc----hHHhhhhcccccCCCchHHHHHHHHHHHHHhccceEEEeeeeEEeeccCC
Confidence 2 24578899999999999998876 67788999999999889999999999999999999999999999999877
Q ss_pred ccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCCC--CC--CCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 006070 524 SADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP--EG--FPESGSVQAILDWQRRTMDMMYKDVVQALR 599 (662)
Q Consensus 524 ~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~p--eG--~~~~~~v~~il~~~~~ti~~~~~si~~~L~ 599 (662)
+. +.|.+++||++||++|+++||+|+||||||+|| || .+++.++|+||||||||||||++||+++|+
T Consensus 597 ~~---------~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p~~~svqaIl~wQyrTms~g~~sI~~~Lk 667 (887)
T KOG1329|consen 597 DS---------VLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTPGSGSVQAILHWQYRTMSMGYKSIYKALK 667 (887)
T ss_pred Cc---------ccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCCCcchHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 64 579999999999999999999999999999999 89 789999999999999999999999999999
Q ss_pred HCCCC-CCccceeEEeecCCcccccCCCCCCCCCCCCchHHHHHhhcceeeEEEeeceeeEe
Q 006070 600 AKGIM-EDPRNYLTFFCLGNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIGN 660 (662)
Q Consensus 600 ~~gi~-~~~~~Yi~f~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iYvHsK~mIv~ 660 (662)
+.|++ .+|.+|++|+||+|+|. .+|+.||||||||||+||||
T Consensus 668 a~g~d~~~yi~f~~lr~~g~~e~-------------------~~~~~~~emIYVHsK~mIvD 710 (887)
T KOG1329|consen 668 AVGLDPADYIDFLGLRCLGNREE-------------------QAQRLRREMIYVHSKLMIVD 710 (887)
T ss_pred HhcCCccccceeeeeeeeecccc-------------------ccccceEEEEEEeeeeEEec
Confidence 99997 56777777777777743 15678999999999999998
No 5
>PLN02866 phospholipase D
Probab=100.00 E-value=3.7e-87 Score=762.81 Aligned_cols=497 Identities=26% Similarity=0.406 Sum_probs=360.9
Q ss_pred CCCCeeeeEE-------EEeccCC--CceEEEEEEecCCCCCceeEEEEeeeeeecC-CceEEEEEeccCCCCCCCCCCC
Q 006070 64 QSNPRWYESF-------HIYCAHM--ASNIIFTVKDDNPIGATLIGRAYVPVEEVLG-GEEVDKWVEILDEDRNPISSGS 133 (662)
Q Consensus 64 t~nP~WNE~F-------~~~v~~~--~~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~-g~~~~~w~~L~~~~~k~~k~~G 133 (662)
..|..|...+ -..+.++ ...+.+.|+|.+. ....-|+..+.+..-.. ......-+.+. .|
T Consensus 213 ~~~~~w~k~w~v~k~~~l~~~~~p~~~~~~~v~lfD~~~-~~~~~~~~~~~~~~~~k~~~~~~~~~~i~---------~~ 282 (1068)
T PLN02866 213 CCNDNWQKVWAVLKPGFLALLEDPFDAKPLDIIVFDVLP-ASNGNGEGQISLAKEIKERNPLRFGFKVT---------CG 282 (1068)
T ss_pred eecCchheeEEEEeccEEEEEecCCCCceeEEEEEeccc-ccccCCCcceeecccccccCCCcceEEEe---------cC
Confidence 5567787763 2234333 2456777787654 21222333333322211 11112222331 23
Q ss_pred ceEEEEEeeccccchhhhhcccCCCCCCCCCcccccccCceeeEcccCCCCCCCCCceecC----CCcccCCcc-hHHHH
Q 006070 134 KIHVKLQYFDVTKDRSWARGIRSAKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLA----GGKYYEPHR-CWEDI 208 (662)
Q Consensus 134 ~i~l~l~f~~~~~~~~W~~gI~~~~~~g~~~~~~p~~~g~~v~l~~d~h~~~~~~p~~~l~----~g~~~~~~~-~~~~l 208 (662)
.=.|.++........+|..+|... ..+.+ +-+...|||+||+|+++++ ..++|.+++ +|++|
T Consensus 283 ~r~l~l~~~s~~~~~~w~~ai~~~----------~~~~~---~~~~~~hRF~SFAP~r~~~~~gN~vk~LvDG~dyF~AL 349 (1068)
T PLN02866 283 NRSIRLRTKSSAKVKDWVAAINDA----------GLRPP---EGWCHPHRFGSFAPPRGLTEDGSQAQWFIDGHAAFEAI 349 (1068)
T ss_pred ceEEEEEECCHHHHHHHHHHHHHH----------HhccC---ccccccCcCCCcCCCccccCCCCEEEEEeCHHHHHHHH
Confidence 334677777777778999999762 11111 1244589999999999764 245777664 79999
Q ss_pred HHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCccCCChHHH
Q 006070 209 FDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEET 288 (662)
Q Consensus 209 ~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~~~~~~~ 288 (662)
++||++||++|||++|||+|++||+|++. ++.+.+|+++|++||++||+||||+||+++...... + ..+
T Consensus 350 ~eAIe~AKesI~I~~WwlsPEiYL~Rp~~---D~~g~RL~~lL~rKAkrGVkVrVLLyD~vg~al~~~------S--~~~ 418 (1068)
T PLN02866 350 ASAIENAKSEIFITGWWLCPELYLRRPFH---DHESSRLDSLLEAKAKQGVQIYILLYKEVALALKIN------S--VYS 418 (1068)
T ss_pred HHHHHhcccEEEEEEccCCceEEEEecCC---CchHHHHHHHHHHHHHCCCEEEEEEECccccccccC------c--hhh
Confidence 99999999999999999999999998532 126899999999999999999999999987531111 0 111
Q ss_pred Hhhh--cCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCCCCcc
Q 006070 289 EKFF--QGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSL 366 (662)
Q Consensus 289 ~~~l--~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l 366 (662)
.+.| .++||+|..+|.+.. ...++||||||+||||++ +||+||+|||.|||||++|++
T Consensus 419 k~~L~~lh~gI~V~r~P~~~~---------~~~ln~RhHRKIVVIDg~-----------IAFvGGiNLc~GRWDT~~H~l 478 (1068)
T PLN02866 419 KRRLLGIHENVKVLRYPDHFS---------SGVYLWSHHEKLVIVDYQ-----------ICFIGGLDLCFGRYDTPEHRV 478 (1068)
T ss_pred HHHHHHhCCCeEEEecCcccc---------cCcccccCCCCeEEECCC-----------EEEecCcccCCCccCCccccc
Confidence 1222 367999876543211 224689999999999999 999999999999999999999
Q ss_pred cccC-CCcCCCCCCCCCCCCC----------CcCCCCCCCCeeeeeeeeeCHHHHHHHHHHHHHHHhhcCCcc-------
Q 006070 367 FRTL-DTAHHDDFHQPNFPGA----------SIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDV------- 428 (662)
Q Consensus 367 ~~~~-~~~~~~d~~~~~~~~~----------~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW~~~~~~~~------- 428 (662)
.+.. ..++|+||.||+..+. ..|...|||||||+||+|+||||+||+++|++|||++++.+.
T Consensus 479 ~D~~~~~wPGkDY~Npr~~d~~~~~~~~~d~ldR~~~pRmPWHDV~~~V~GpAardLa~hFvqRWN~at~~k~~~~~~~~ 558 (1068)
T PLN02866 479 GDCPPVIWPGKDYYNPRESEPNSWEDTMKDELDRRKYPRMPWHDVHCALWGPPCRDVARHFVQRWNYAKRNKAPNEQAIP 558 (1068)
T ss_pred ccccccccCcccccccccccccccccccccccccccCCCCCceEEEEEEECHHHHHHHHHHHHHHHHHhcccCccccccc
Confidence 7643 3467999999865331 235677899999999999999999999999999998865321
Q ss_pred -cccc-----------------------------------------cccCcccCCCCCCC--------------------
Q 006070 429 -LVHL-----------------------------------------RELGDIIIPPSPVM-------------------- 446 (662)
Q Consensus 429 -l~~~-----------------------------------------~~~~~~~~P~~~~~-------------------- 446 (662)
+++. ..+| +++|.++..
T Consensus 559 ll~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P-~llP~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (1068)
T PLN02866 559 LLMPHHHMVIPHYLGGSEEEEIESKNQEDNQKGIARQDSFSSRSSLQDIP-LLLPQEADATDGSGGGHKLNGMNSTNGSL 637 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cCCCCCccccccccccccccccccccccc
Confidence 1100 0011 122221000
Q ss_pred -----------------------------------------------------------CC------CCCCCceeeEEee
Q 006070 447 -----------------------------------------------------------YP------DDHDTWNVQLFRS 461 (662)
Q Consensus 447 -----------------------------------------------------------~~------~~~~~~~vQv~rS 461 (662)
.+ ...++|.|||+||
T Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~QivRS 717 (1068)
T PLN02866 638 SFSFRKSKIEPVLPDTPMKGFVDDLGFLDLSVKMSSAERGSKESDSEWWETQERGDQVGSADEVGQVGPRVSCRCQVIRS 717 (1068)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCeEEEEEEee
Confidence 00 0134689999999
Q ss_pred ccCCcCCCCCCChhHHhhcccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchH
Q 006070 462 IDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPK 541 (662)
Q Consensus 462 ~~~~s~~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~ 541 (662)
++.||+. - ..+|+||++||+++|++|+||||||||||++++.+ +..+.|+|+.
T Consensus 718 ~~~WS~G-----------------~-~~~E~SI~~AYi~~I~~A~hfIYIENQFFis~~~~---------~~~i~N~I~~ 770 (1068)
T PLN02866 718 VSQWSAG-----------------T-SQVEESIHAAYCSLIEKAEHFIYIENQFFISGLSG---------DDTIQNRVLE 770 (1068)
T ss_pred cccccCC-----------------C-CchHHHHHHHHHHHHHhcccEEEEecccccccccc---------cccccchHHH
Confidence 9988752 1 13699999999999999999999999999998642 3467999999
Q ss_pred HHHHHHHHHHhcCCceEEEEEecCCCC--CCC---CchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCccceeEEeec
Q 006070 542 ELSLKIVSKIEAGERFTVYIVVPMWPE--GFP---ESGSVQAILDWQRRTMDMMYKDVVQALRAKGIMEDPRNYLTFFCL 616 (662)
Q Consensus 542 ~l~~~i~~A~~~g~~~~V~Iv~P~~pe--G~~---~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~~~~~~Yi~f~~l 616 (662)
+|++||++|+++|++|+||||||++|| |.. ++.++|+||+||++|||||++||+++|++++ ..+|.|||+||||
T Consensus 771 AL~~RI~rA~~~~~~frviIViP~~P~F~G~v~~~~~~svr~Im~~Q~~tI~rG~~Si~~~L~~~~-g~~p~dYisf~~L 849 (1068)
T PLN02866 771 ALYRRILRAHKEKKCFRVIIVIPLLPGFQGGVDDGGAASVRAIMHWQYRTICRGKNSILHNLYDLL-GPKTHDYISFYGL 849 (1068)
T ss_pred HHHHHHHHHHhcCCCeEEEEEecCCCCcCCCCCCccchhHHHHHHHHHHHHHhhHHHHHHHHHHHh-CCCHHHeEeeecc
Confidence 999999999999999999999999996 543 4578999999999999999999999999853 2479999999999
Q ss_pred CCcccccCCCCCCCCCCCCchHHHHHhhcceeeEEEeeceeeEe
Q 006070 617 GNREVKRSGEYEPAERPEDDSDYLRAQEARRFMIYVHAKMMIGN 660 (662)
Q Consensus 617 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iYvHsK~mIv~ 660 (662)
|||+....| +++++ ||||||||+||||
T Consensus 850 Rn~~~l~~~-----------~~~vt------eqIYVHsK~~IvD 876 (1068)
T PLN02866 850 RAYGRLFEG-----------GPLAT------SQIYVHSKIMIVD 876 (1068)
T ss_pred cccccccCC-----------Ccccc------eeeEEEeeEEEEc
Confidence 999765222 22333 5899999999998
No 6
>PRK12452 cardiolipin synthetase; Reviewed
Probab=100.00 E-value=4.7e-44 Score=400.50 Aligned_cols=284 Identities=21% Similarity=0.253 Sum_probs=218.9
Q ss_pred ccccccCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcc
Q 006070 166 FYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDI 245 (662)
Q Consensus 166 ~~p~~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~ 245 (662)
.+|...||++++|.|+ ++.|++++++|++||++|+|++|++. +|. .+.
T Consensus 133 ~~p~~~~n~~~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~-----~g~ 180 (509)
T PRK12452 133 GGPAADRTTTKLLTNG--------------------DQTFSEILQAIEQAKHHIHIQYYIYK-------SDE-----IGT 180 (509)
T ss_pred CCcccCCCEEEEeCCH--------------------HHHHHHHHHHHHHhCCEEEEEEEEEe-------CCc-----HHH
Confidence 3789999999999994 36789999999999999999999885 444 588
Q ss_pred hHHHHHHHHhhcCCeEEEEEecCccccccccccCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCc
Q 006070 246 MLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHH 325 (662)
Q Consensus 246 ~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hH 325 (662)
.+.++|++||+|||+||||+ |+.||... ...+.+.|+++||+|..+.+.... ....+.++|||
T Consensus 181 ~i~~aL~~aa~rGV~VRiL~-D~~Gs~~~----------~~~~~~~L~~aGi~v~~f~P~~~~------~~~~~~n~RnH 243 (509)
T PRK12452 181 KVRDALIKKAKDGVIVRFLY-DGLGSNTL----------RRRFLQPMKEAGIEIVEFDPIFSA------WLLETVNYRNH 243 (509)
T ss_pred HHHHHHHHHHHCCCEEEEEE-ECCCCCCC----------CHHHHHHHHhCCeEEEEecCcccc------cccccccCCCC
Confidence 99999999999999999995 99998522 246778899999999887542110 11234689999
Q ss_pred cceEEEcCCCCCCCccccceeEEeccccCcCccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeee
Q 006070 326 QKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLE 405 (662)
Q Consensus 326 qK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~ 405 (662)
||++||||+ +||+||+|++++|... .....+|||+|++++
T Consensus 244 RKi~VIDg~-----------ia~~GG~Ni~d~y~~~-----------------------------~~~~~~WrD~~~~i~ 283 (509)
T PRK12452 244 RKIVIVDGE-----------IGFTGGLNVGDEYLGR-----------------------------SKKFPVWRDSHLKVE 283 (509)
T ss_pred CeEEEEcCC-----------EEEeCCcccchhhcCC-----------------------------CCCCCCceEEEEEEE
Confidence 999999999 9999999999975421 123469999999999
Q ss_pred CHHHHHHHHHHHHHHHhhcCCccccccccc-CcccCCCCCCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhccccc
Q 006070 406 GPIAWDVLFNFEQRWRKQGGKDVLVHLREL-GDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVS 484 (662)
Q Consensus 406 Gpaa~dl~~~F~qrW~~~~~~~~l~~~~~~-~~~~~P~~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~ 484 (662)
||+|.+++..|.++|+.+++.......... .....|+. +...+...+|++.|.+
T Consensus 284 Gp~V~~l~~~F~~dW~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~q~~~sgp--------------------- 338 (509)
T PRK12452 284 GKALYKLQAIFLEDWLYASSGLNTYSWDPFMNRQYFPGK----EISNAEGAVQIVASGP--------------------- 338 (509)
T ss_pred CHHHHHHHHHHHHHHHHhhCcccccccccccchhcCCCc----cccCCCeEEEEEeCCC---------------------
Confidence 999999999999999987653111000000 00001110 1112445789888732
Q ss_pred CCCCcchhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEec
Q 006070 485 GKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVP 564 (662)
Q Consensus 485 g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P 564 (662)
. ..+.+|+++|+++|.+||++|||+||||+|+. ++..+|..|+++| |+|+|++|
T Consensus 339 --~-~~~~~i~~~~l~~I~~A~~~I~I~tpYf~pd~---------------------~l~~aL~~Aa~rG--V~Vrii~p 392 (509)
T PRK12452 339 --S-SDDKSIRNTLLAVMGSAKKSIWIATPYFIPDQ---------------------ETLTLLRLSAISG--IDVRILYP 392 (509)
T ss_pred --C-chhHHHHHHHHHHHHHhhhEEEEECCccCCCH---------------------HHHHHHHHHHHcC--CEEEEEcC
Confidence 1 23579999999999999999999999999875 7899999999999 99999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q 006070 565 MWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM 604 (662)
Q Consensus 565 ~~peG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~ 604 (662)
..| |+..+ +|+. .++++.|+++|++
T Consensus 393 ~~~----D~~~~----~~a~-------~~~~~~L~~aGv~ 417 (509)
T PRK12452 393 GKS----DSIIS----DQAS-------QSYFTPLLKAGAS 417 (509)
T ss_pred CCC----ChHHH----HHHH-------HHHHHHHHHcCCE
Confidence 765 65544 3544 4689999999985
No 7
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=100.00 E-value=1.7e-42 Score=387.33 Aligned_cols=280 Identities=22% Similarity=0.363 Sum_probs=217.6
Q ss_pred cccccCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcch
Q 006070 167 YPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIM 246 (662)
Q Consensus 167 ~p~~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~ 246 (662)
+|...||+|++|.|+ ++.|++|+++|++||++|+|++|++. +|. .+.+
T Consensus 110 ~~~~~~n~v~ll~~g--------------------~~~~~~l~~~I~~Ak~~I~l~~yi~~-------~d~-----~g~~ 157 (483)
T PRK01642 110 IPGLKGNQLRLLTNG--------------------DETFQAIIRDIELARHYILMEFYIWR-------PDG-----LGDQ 157 (483)
T ss_pred CCccCCCEEEEEcCH--------------------HHHHHHHHHHHHHhhcEEEEEEEEEc-------cCC-----cHHH
Confidence 788999999999994 36789999999999999999999874 444 5789
Q ss_pred HHHHHHHHhhcCCeEEEEEecCccccccccccCccCCChHHHHhhhcCCCcEEEecCCC-CCCCCCcccccccccccCCc
Q 006070 247 LGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRN-PDDGGSFIQDIQISAMFTHH 325 (662)
Q Consensus 247 l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~r~-p~~~~~~~~~~~~~~~~~hH 325 (662)
+.++|.+||+|||+|||| +|+.|+.... .+.+.+.|+++||++..+.+. +.. ......++|+|
T Consensus 158 i~~aL~~aa~rGV~VriL-~D~~Gs~~~~---------~~~~~~~L~~~Gi~v~~~~p~~~~~------~~~~~~n~RnH 221 (483)
T PRK01642 158 VAEALIAAAKRGVRVRLL-YDSIGSFAFF---------RSPYPEELRNAGVEVVEFLKVNLGR------VFRRRLDLRNH 221 (483)
T ss_pred HHHHHHHHHHCCCEEEEE-EECCCCCCCC---------cHHHHHHHHHCCCEEEEecCCCccc------ccccccccccC
Confidence 999999999999999999 5999885432 134778899999999887321 110 11235688999
Q ss_pred cceEEEcCCCCCCCccccceeEEeccccCcC-ccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeee
Q 006070 326 QKIVVVDSPMPNGDPERRRIMSFVGGIDLCD-GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRL 404 (662)
Q Consensus 326 qK~vVID~~~~~~~~~~~~~vafvGG~nl~~-~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v 404 (662)
||++|||++ +||+||+|+++ +|... .....+|||+|+++
T Consensus 222 rKi~VIDg~-----------ia~~Gg~Ni~d~~y~~~-----------------------------~~~~~~w~D~~~~i 261 (483)
T PRK01642 222 RKIVVIDGY-----------IAYTGSMNVVDPEYFKQ-----------------------------DPGVGQWRDTHVRI 261 (483)
T ss_pred ceEEEEcCC-----------EEEeCCcccCCHHHhCC-----------------------------CCCCCCcEEEEEEE
Confidence 999999999 99999999999 65531 11346899999999
Q ss_pred eCHHHHHHHHHHHHHHHhhcCCcccccccccCcccCCCCCCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhccccc
Q 006070 405 EGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVS 484 (662)
Q Consensus 405 ~Gpaa~dl~~~F~qrW~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~ 484 (662)
+||+|.+++..|.++|+.++++........+ ..++ ....+...+|++.|.+
T Consensus 262 ~Gp~v~~l~~~F~~dW~~~~~~~~~~~~~~~---~~~~-----~~~~~~~~~qi~~sgP--------------------- 312 (483)
T PRK01642 262 EGPVVTALQLIFAEDWEWETGERILPPPPDV---LIMP-----FEEASGHTVQVIASGP--------------------- 312 (483)
T ss_pred EcHHHHHHHHHHHHHHHHHhCcccCCCCccc---ccCC-----ccCCCCceEEEEeCCC---------------------
Confidence 9999999999999999988664211000000 0000 0123345789888732
Q ss_pred CCCCcchhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEec
Q 006070 485 GKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVP 564 (662)
Q Consensus 485 g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P 564 (662)
. ..+..++++|+++|.+||++|||++|||+|+. +|..+|..|+++| |+|.||+|
T Consensus 313 --~-~~~~~~~~~~~~~I~~A~~~I~I~tpYfip~~---------------------~i~~aL~~Aa~rG--V~Vril~p 366 (483)
T PRK01642 313 --G-DPEETIHQFLLTAIYSARERLWITTPYFVPDE---------------------DLLAALKTAALRG--VDVRIIIP 366 (483)
T ss_pred --C-ChhhHHHHHHHHHHHHhccEEEEEcCCcCCCH---------------------HHHHHHHHHHHcC--CEEEEEeC
Confidence 2 23578999999999999999999999999875 7999999999999 99999999
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q 006070 565 MWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM 604 (662)
Q Consensus 565 ~~peG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~ 604 (662)
..+ |+..+ +|+. .+++++|.++|++
T Consensus 367 ~~~----d~~~~----~~~~-------~~~~~~L~~~Gv~ 391 (483)
T PRK01642 367 SKN----DSLLV----FWAS-------RAFFTELLEAGVK 391 (483)
T ss_pred CCC----CcHHH----HHHH-------HHHHHHHHHcCCE
Confidence 875 65544 4554 4689999999985
No 8
>PRK11263 cardiolipin synthase 2; Provisional
Probab=100.00 E-value=4.6e-40 Score=358.63 Aligned_cols=277 Identities=21% Similarity=0.284 Sum_probs=209.9
Q ss_pred ccccCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchH
Q 006070 168 PQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIML 247 (662)
Q Consensus 168 p~~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l 247 (662)
+.+.||+|+||.|| + ++|++++++|++||++|+|++|+|. +|. .+..|
T Consensus 3 ~~~~gN~v~ll~~G---------------~-----e~~~~l~~~I~~Ak~~I~i~~yi~~-------~d~-----~g~~l 50 (411)
T PRK11263 3 SWREGNRIQLLENG---------------E-----QYYPRVFEAIAAAQEEILLETFILF-------EDK-----VGKQL 50 (411)
T ss_pred cccCCCeEEEEeCH---------------H-----HHHHHHHHHHHHhCCEEEEEEEEEe-------cCc-----hHHHH
Confidence 67899999999994 3 5678999999999999999999884 343 57899
Q ss_pred HHHHHHHhhcCCeEEEEEecCccccccccccCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccc
Q 006070 248 GELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQK 327 (662)
Q Consensus 248 ~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK 327 (662)
.++|++||+|||+||||+ |..|+... ...+.+.|+++||++..+.+.+. + ......++.++|+|
T Consensus 51 ~~aL~~aa~rGV~Vril~-D~~gs~~~----------~~~~~~~L~~aGv~v~~~~p~~~----~-~~~~~~~~~R~HrK 114 (411)
T PRK11263 51 HAALLAAAQRGVKVEVLV-DGYGSPDL----------SDEFVNELTAAGVRFRYFDPRPR----L-LGMRTNLFRRMHRK 114 (411)
T ss_pred HHHHHHHHHCCCEEEEEE-ECCCCCCC----------CHHHHHHHHHCCeEEEEeCCccc----c-cccccccccCCcce
Confidence 999999999999999995 99887532 24678889999999988754321 0 01122234699999
Q ss_pred eEEEcCCCCCCCccccceeEEeccccCcCccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCH
Q 006070 328 IVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP 407 (662)
Q Consensus 328 ~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gp 407 (662)
++|||++ +||+||+|++++++.. ....+|+|+|++|+||
T Consensus 115 iiVIDg~-----------~a~vGg~N~~~~~~~~------------------------------~g~~~w~D~~v~i~Gp 153 (411)
T PRK11263 115 IVVIDGR-----------IAFVGGINYSADHLSD------------------------------YGPEAKQDYAVEVEGP 153 (411)
T ss_pred EEEEcCC-----------EEEEcCeEchHhhccc------------------------------cCCCCceEEEEEEECH
Confidence 9999999 9999999999876531 0124799999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCcccccccccCcccCCCCCCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhcccccCCC
Q 006070 408 IAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKD 487 (662)
Q Consensus 408 aa~dl~~~F~qrW~~~~~~~~l~~~~~~~~~~~P~~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~g~~ 487 (662)
+|.+++..|.+.|........... ... .++. +...+...+|++.+- +
T Consensus 154 ~V~~l~~~f~~~w~~~~~~~~~~~--~~~---~~~~----~~~~g~~~~~~v~~~------------------------p 200 (411)
T PRK11263 154 VVADIHQFELEALPGQSAARRWWR--RHH---RAEE----NRQPGEAQALLVWRD------------------------N 200 (411)
T ss_pred HHHHHHHHHHHHHhhcccchhhhc--ccc---cCcc----cCCCCCeEEEEEECC------------------------C
Confidence 999999999999975421100000 000 0000 112344567776552 1
Q ss_pred CcchhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCCC
Q 006070 488 NIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP 567 (662)
Q Consensus 488 ~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~p 567 (662)
......|+++|+.+|.+|++.|||+||||+|+. .|..+|..|++|| |+|.||+|..|
T Consensus 201 ~~~~~~i~~~~~~~i~~A~~~I~I~tpYf~p~~---------------------~l~~aL~~Aa~RG--V~V~ii~~~~~ 257 (411)
T PRK11263 201 EEHRDDIERHYLKALRQARREVIIANAYFFPGY---------------------RLLRALRNAARRG--VRVRLILQGEP 257 (411)
T ss_pred cchHHHHHHHHHHHHHHhceEEEEEecCcCCCH---------------------HHHHHHHHHHHCC--CEEEEEeCCCC
Confidence 123568999999999999999999999999864 7999999999999 99999999654
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q 006070 568 EGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM 604 (662)
Q Consensus 568 eG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~ 604 (662)
|.+.+ +|.. .++|+.|+++|++
T Consensus 258 ----d~~~~----~~a~-------~~~~~~Ll~~Gv~ 279 (411)
T PRK11263 258 ----DMPIV----RVGA-------RLLYNYLLKGGVQ 279 (411)
T ss_pred ----CcHHH----HHHH-------HHHHHHHHHCCCE
Confidence 66654 3444 4689999999985
No 9
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.97 E-value=1.6e-29 Score=277.02 Aligned_cols=276 Identities=14% Similarity=0.143 Sum_probs=184.5
Q ss_pred chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCccC
Q 006070 203 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 282 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~ 282 (662)
..++.+.++|.+||++|+|+++.|.| ++... ...|.+|.++|++||+|||+||||+ |..+.
T Consensus 26 ~t~~~~~~lI~~Ak~~I~I~s~yf~~------~d~~~-~~~G~~i~~aL~~aA~rGV~VRIL~-d~~~~----------- 86 (424)
T PHA02820 26 STFNFWREILSNTTKTLDISSFYWSL------SDEVG-TNFGTMILNEIIQLPKRGVRVRIAV-NKSNK----------- 86 (424)
T ss_pred CHHHHHHHHHHhhCcEEEEEeEEEec------Ccccc-chhHHHHHHHHHHHHHCCCEEEEEE-CCCCC-----------
Confidence 46889999999999999999987754 22100 0137789999999999999999996 86431
Q ss_pred CChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCC
Q 006070 283 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 362 (662)
Q Consensus 283 ~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~ 362 (662)
.....+.|+++||++..+.+.. ....++|+|++|||++ ++|+||+|+.. |+-+
T Consensus 87 --~~~~~~~L~~aGv~v~~~~~~~------------~~~~~~HrK~~VIDg~-----------~~~iGS~Nid~-rsl~- 139 (424)
T PHA02820 87 --PLKDVELLQMAGVEVRYIDITN------------ILGGVLHTKFWISDNT-----------HIYLGSANMDW-RSLT- 139 (424)
T ss_pred --chhhHHHHHhCCCEEEEEecCC------------CCcccceeeEEEECCC-----------EEEEeCCcCCh-hhhh-
Confidence 1234567888999998775221 1246899999999999 99999999966 4421
Q ss_pred CCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeee--eCHHHHHHHHHHHHHHHhhcCCcccccccccCcccC
Q 006070 363 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRL--EGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIII 440 (662)
Q Consensus 363 ~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v--~Gpaa~dl~~~F~qrW~~~~~~~~l~~~~~~~~~~~ 440 (662)
..+|+++.+ +||+|.++++.|.++|+..++.........++....
T Consensus 140 ---------------------------------~n~E~gv~i~~~g~~v~~L~~~F~~dW~~~~~~~~~~~~~~~~~~~~ 186 (424)
T PHA02820 140 ---------------------------------QVKELGIAIFNNSNLAADLTQIFEVYWYLGVNNLPYNWKNFYPLYYN 186 (424)
T ss_pred ---------------------------------hCCceEEEEecchHHHHHHHHHHHHHHHhhccCCCCccccccccccc
Confidence 124677777 799999999999999997753211000001110000
Q ss_pred CCCCCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhcccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccc
Q 006070 441 PPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSS 520 (662)
Q Consensus 441 P~~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~ 520 (662)
+..|.... ..+....|++.|.+... .+ .......++|+++|.+||++|||+++||+|+.
T Consensus 187 ~~~p~~~~-~~~~~~~~~~sssP~~~-----------------~~---~~r~~~~~~~l~~I~~Ak~~I~I~tpyfvP~~ 245 (424)
T PHA02820 187 TDHPLSLN-VSGVPHSVFIASAPQQL-----------------CT---MERTNDLTALLSCIRNASKFVYVSVMNFIPII 245 (424)
T ss_pred cCCCcccc-cCCccceEEEeCCChhh-----------------cC---CCCCchHHHHHHHHHHHhhEEEEEEcccccee
Confidence 11110001 11111234444422100 00 01134689999999999999999999999983
Q ss_pred c-------ccccCCCCCccccccccchHHHHHHHHH-HHhcCCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHH
Q 006070 521 F-------AWSADGIKPEEINALHLIPKELSLKIVS-KIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYK 592 (662)
Q Consensus 521 ~-------~w~~~~~~~~~~~~~n~i~~~l~~~i~~-A~~~g~~~~V~Iv~P~~peG~~~~~~v~~il~~~~~ti~~~~~ 592 (662)
. .|+ .|..+|.+ |++|| |+|+|++|.|+ ++..+. |++ .
T Consensus 246 ~~~~~~~~yw~-----------------~i~~AL~~AA~~RG--V~VriLvp~~~----d~~~~~----~a~-------~ 291 (424)
T PHA02820 246 YSKAGKILFWP-----------------YIEDELRRAAIDRK--VSVKLLISCWQ----RSSFIM----RNF-------L 291 (424)
T ss_pred eccCCcccchH-----------------HHHHHHHHHHHhCC--CEEEEEEeccC----CCCccH----HHH-------H
Confidence 2 233 68899986 66799 99999999886 665553 333 3
Q ss_pred HHHHHHHHCCCCCCccceeEEeec
Q 006070 593 DVVQALRAKGIMEDPRNYLTFFCL 616 (662)
Q Consensus 593 si~~~L~~~gi~~~~~~Yi~f~~l 616 (662)
..+++|.++|++ =|+.+|-.
T Consensus 292 ~~l~~L~~~gv~----I~Vk~y~~ 311 (424)
T PHA02820 292 RSIAMLKSKNIN----IEVKLFIV 311 (424)
T ss_pred HHHHHHhccCce----EEEEEEEc
Confidence 467888888875 36666644
No 10
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=99.97 E-value=3.1e-29 Score=278.34 Aligned_cols=287 Identities=23% Similarity=0.299 Sum_probs=207.1
Q ss_pred ccCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHH
Q 006070 170 RKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGE 249 (662)
Q Consensus 170 ~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~ 249 (662)
..++.++++.++ .+.|..+.++|++|+++|+++.|++. ++. .+..+.+
T Consensus 57 ~~~~~~~~l~~~--------------------~~~~~~~~~~i~~a~~~I~~~~~i~~-------~d~-----~~~~i~~ 104 (438)
T COG1502 57 ISGNGVDLLKDG--------------------ADAFAALIELIEAAKKSIYLQYYIWQ-------DDE-----LGREILD 104 (438)
T ss_pred CCCCceEEecCH--------------------HHHHHHHHHHHHHHhhEEEEEEEEEe-------CCh-----hHHHHHH
Confidence 588889888884 35688999999999999999988764 443 5789999
Q ss_pred HHHHHhhcCCeEEEEEecCccccccccccCccCCChHHHHhhhcCCCc-EEEecCCCCCCCCCcccccccccccCCccce
Q 006070 250 LLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMATHDEETEKFFQGTDV-HCILCPRNPDDGGSFIQDIQISAMFTHHQKI 328 (662)
Q Consensus 250 lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~~~~~~~~~~l~~~~v-~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~ 328 (662)
+|.++|++||+||+|+ |+.|+.... .......+++.++ ++..+.+.... . ......+.++|+|+
T Consensus 105 ~l~~~a~~gv~vr~l~-D~~~~~~~~---------~~~~~~~~~~~~i~~~~~~~~~~~~-~----~~~~~~~~r~H~K~ 169 (438)
T COG1502 105 ALIEAAKRGVEVRLLL-DDIGSTRGL---------LKSLLALLKRAGIEEVRLFNPASPR-P----LRFRRLNRRLHRKI 169 (438)
T ss_pred HHHHHHHcCCEEEEEE-ecCCCcccc---------cHHHHHHHhcCCceEEEecCCcccc-c----chhhhhhccccceE
Confidence 9999999999999996 999874221 1466778889999 66665432110 0 12344688999999
Q ss_pred EEEcCCCCCCCccccceeEEeccccCcCccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHH
Q 006070 329 VVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPI 408 (662)
Q Consensus 329 vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpa 408 (662)
+|||+. ++|+||.|+.++++... ....+|+|++++++||+
T Consensus 170 ~viD~~-----------i~~vGg~N~~d~y~~~~-----------------------------~~~~~~~D~~~~~~g~~ 209 (438)
T COG1502 170 VVIDGK-----------VAFVGGANIGDEYFHKD-----------------------------KGLGYWRDLHVRITGPA 209 (438)
T ss_pred EEEcCC-----------EEEecCcccchhhhccC-----------------------------cCcccceeeeEEEECHH
Confidence 999999 99999999999977420 02359999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCcccccccccCcccCCCC-CCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhcccccCCC
Q 006070 409 AWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPS-PVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKD 487 (662)
Q Consensus 409 a~dl~~~F~qrW~~~~~~~~l~~~~~~~~~~~P~~-~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~g~~ 487 (662)
|.++..+|.++|+............ ..+.. +...........+|++.+.+.... .
T Consensus 210 v~~l~~~f~~~w~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~-------------------~ 265 (438)
T COG1502 210 VADLARLFIQDWNLESGSSKPLLAL-----VRPPLQSLSLLPVGRGSTVQVLSSGPDKGL-------------------G 265 (438)
T ss_pred HHHHHHHHHHHhhhccCcCcccccc-----cccccccccccccccCcceEEEecCCcccc-------------------c
Confidence 9999999999999874321100000 00000 000011122233688877542100 0
Q ss_pred CcchhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCCC
Q 006070 488 NIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP 567 (662)
Q Consensus 488 ~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~p 567 (662)
. ....+...|+.+|.+|+++|||++|||+++. ++..+|..|.++| ++|.|++|..
T Consensus 266 ~-~~~~~~~~~~~~i~~A~~~i~i~~pYf~~~~---------------------~~~~al~~a~~~G--v~V~ii~~~~- 320 (438)
T COG1502 266 S-ELIELNRLLLKAINSARESILIATPYFVPDR---------------------ELLAALKAAARRG--VDVRIIIPSL- 320 (438)
T ss_pred h-hhhhHHHHHHHHHHhhceEEEEEcCCcCCCH---------------------HHHHHHHHHHhcC--CEEEEEeCCC-
Confidence 0 0112558999999999999999999999985 7889999999999 9999999954
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q 006070 568 EGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM 604 (662)
Q Consensus 568 eG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~ 604 (662)
+.++...+ +|.+ ..++..|.+.|+.
T Consensus 321 -~~~d~~~~----~~~~-------~~~~~~l~~~gv~ 345 (438)
T COG1502 321 -GANDSAIV----HAAY-------RAYLKELLEAGVK 345 (438)
T ss_pred -CCCChHHH----HHHH-------HHHHHHHHHhCCE
Confidence 23455544 3554 4689999999975
No 11
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.96 E-value=2.4e-28 Score=264.41 Aligned_cols=266 Identities=18% Similarity=0.209 Sum_probs=176.6
Q ss_pred chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCccC
Q 006070 203 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 282 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~ 282 (662)
..|++++++|++||++|+|++|++. ++++. .+.+|.++|++||+|||+||||+ |+.++
T Consensus 31 ~~~~~l~~~I~~Ak~~I~i~~yi~~-----~~~d~-----~g~~i~~aL~~aa~rGV~Vril~-D~~~~----------- 88 (369)
T PHA03003 31 STYECFDEIISQAKKYIYIASFCCN-----LRSTP-----EGRLILDKLKEAAESGVKVTILV-DEQSG----------- 88 (369)
T ss_pred CHHHHHHHHHHhhhhEEEEEEEEec-----ccCCc-----hHHHHHHHHHHhccCCCeEEEEe-cCCCC-----------
Confidence 5799999999999999999999832 13444 68899999999999999999995 97642
Q ss_pred CChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCC
Q 006070 283 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 362 (662)
Q Consensus 283 ~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~ 362 (662)
....+.|+++||++..+.. +. .+..+..|.|++|||++ +||+||+||+++++..
T Consensus 89 ---~~~~~~L~~~Gv~v~~~~~-~~----------~~~~~~~~~k~~IiDg~-----------~~y~Gg~Ni~~~~~~~- 142 (369)
T PHA03003 89 ---DKDEEELQSSNINYIKVDI-GK----------LNNVGVLLGSFWVSDDR-----------RCYIGNASLTGGSIST- 142 (369)
T ss_pred ---CccHHHHHHcCCEEEEEec-cc----------cCCCCceeeeEEEEcCc-----------EEEEecCccCCcccCc-
Confidence 2345788889999876532 11 00012458899999999 9999999999976531
Q ss_pred CCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHHHHHHHHHHHHHHHhhcCCcccccccccCcccCCC
Q 006070 363 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPP 442 (662)
Q Consensus 363 ~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW~~~~~~~~l~~~~~~~~~~~P~ 442 (662)
. ...+.|+|. ||+|.+|+..|.+.|+.++++....... ... ..|.
T Consensus 143 ~----------------------------~~~g~~~d~-----g~~v~~l~~~F~~~w~~~~~~~~~~~~~-~~~-~~~~ 187 (369)
T PHA03003 143 I----------------------------KTLGVYSTY-----PPLATDLRRRFDTFKAFNKNKSVFNRLC-CAC-CLPV 187 (369)
T ss_pred c----------------------------ccceeEecC-----cHHHHHHHHHHHHHHHhcCCCCcccccc-ccc-CCcc
Confidence 1 123589994 9999999999999999775542210000 000 0011
Q ss_pred CCCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhcccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccc
Q 006070 443 SPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFA 522 (662)
Q Consensus 443 ~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~ 522 (662)
........+ ...+++.|.+.. . . + .....++++|+++|.+||++|+|+++||+|....
T Consensus 188 ~~~~~~~~~--~~~~~~~s~P~~-----------~------~-~--~~~~~~~~~ll~~I~~Ak~~I~I~t~yf~P~~~~ 245 (369)
T PHA03003 188 STKYHINNP--IGGVFFSDSPEH-----------L------L-G--YSRTLDADVVLHKIKSAKKSIDLELLSLVPVIRE 245 (369)
T ss_pred cccccccCC--CcceEEecCChH-----------H------c-C--CCCCcCHHHHHHHHHHHhhEEEEEEeccccEEee
Confidence 000000001 111233232100 0 0 0 0123579999999999999999999999986421
Q ss_pred cccCCCCCccccccccchHHHHHHHHHHH-hcCCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHC
Q 006070 523 WSADGIKPEEINALHLIPKELSLKIVSKI-EAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAK 601 (662)
Q Consensus 523 w~~~~~~~~~~~~~n~i~~~l~~~i~~A~-~~g~~~~V~Iv~P~~peG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~ 601 (662)
.+ .-....+|..+|.+|+ +|| |+|+|++|.+. ..+ .. ..++++.|+++
T Consensus 246 d~-----------~~~~~~~i~~AL~~AAa~RG--V~VRILv~~~~--~~~-~~---------------~~~~~~~L~~~ 294 (369)
T PHA03003 246 DD-----------KTTYWPDIYNALIRAAINRG--VKVRLLVGSWK--KND-VY---------------SMASVKSLQAL 294 (369)
T ss_pred CC-----------CCccHHHHHHHHHHHHHcCC--CEEEEEEecCC--cCC-ch---------------hhhHHHHHHHc
Confidence 00 0112347999999885 899 99999999753 122 11 12478899999
Q ss_pred CCC
Q 006070 602 GIM 604 (662)
Q Consensus 602 gi~ 604 (662)
|+.
T Consensus 295 G~~ 297 (369)
T PHA03003 295 CVG 297 (369)
T ss_pred CCC
Confidence 964
No 12
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=99.96 E-value=7.1e-27 Score=256.91 Aligned_cols=257 Identities=15% Similarity=0.130 Sum_probs=175.9
Q ss_pred cCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHH
Q 006070 171 KGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGEL 250 (662)
Q Consensus 171 ~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~l 250 (662)
.+++++++.++ + +.|++|+++|++|+++|+|++|+|. +|+ .|..|.++
T Consensus 23 ~~~~v~~l~~~---------------~-----~f~~~Ll~~I~~Ak~~I~l~~y~~~-------~D~-----~g~~il~A 70 (451)
T PRK09428 23 SPDDVETLYSP---------------A-----DFRETLLEKIASAKKRIYIVALYLE-------DDE-----AGREILDA 70 (451)
T ss_pred CcccEEEEcCH---------------H-----HHHHHHHHHHHhcCCeEEEEEEEec-------CCc-----hHHHHHHH
Confidence 67889999984 3 5678999999999999999999874 454 68899999
Q ss_pred HHHHhh--cCCeEEEEEecCcccccc-ccccCccCCChHHHHhhhcCC--CcEEEecCCCCCCCCCcccccccccccCCc
Q 006070 251 LKKKAS--EGVRVCMLVWDDRTSVSL-LKKDGLMATHDEETEKFFQGT--DVHCILCPRNPDDGGSFIQDIQISAMFTHH 325 (662)
Q Consensus 251 L~~kA~--~GV~VrvLlwd~~~s~~~-~~~~~~~~~~~~~~~~~l~~~--~v~~~~~~r~p~~~~~~~~~~~~~~~~~hH 325 (662)
|.+|++ +||+|+||+ |...+... ....+ ...+..+.+.|+++ |+++.++.. |.. ....+.++|
T Consensus 71 L~~a~~~~~gv~VrvLv-D~~Ra~Rg~iG~~~--~~~~~~~~~~l~~~~~gv~v~~f~~-p~~--------~~e~~gr~H 138 (451)
T PRK09428 71 LYQAKQQNPELDIKVLV-DWHRAQRGLIGAAA--SNTNADWYCEMAQEYPGVDIPVYGV-PVN--------TREALGVLH 138 (451)
T ss_pred HHHHHhcCCCcEEEEEE-EcccccccccccCC--CCcCHHHHHHHHHhCCCceEEEcCC-ccc--------cchhhhhce
Confidence 999854 899999996 98532211 01000 01124666777764 589887731 211 123467899
Q ss_pred cceEEEcCCCCCCCccccceeEEeccccCcCccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeee
Q 006070 326 QKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLE 405 (662)
Q Consensus 326 qK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~ 405 (662)
+|++|||++ |+|+| .||++.|+.. + .. ...|.+++|+
T Consensus 139 rKi~IiD~~-----------v~ysG-aNi~d~Yl~~--~---------------------------~~--~r~Dry~~i~ 175 (451)
T PRK09428 139 LKGFIIDDT-----------VLYSG-ASLNNVYLHQ--H---------------------------DK--YRYDRYHLIR 175 (451)
T ss_pred eeEEEECCC-----------EEEec-ccccHHHhcC--C---------------------------cc--cCcceEEEEe
Confidence 999999999 99987 7999986631 0 01 1127788899
Q ss_pred CHHHHHHHHHHHHHHHhhcCCcccccccccCcccCCCC-----------------CCCCCCCCCCceeeEEeeccCCcCC
Q 006070 406 GPIAWDVLFNFEQRWRKQGGKDVLVHLRELGDIIIPPS-----------------PVMYPDDHDTWNVQLFRSIDGGAAF 468 (662)
Q Consensus 406 Gpaa~dl~~~F~qrW~~~~~~~~l~~~~~~~~~~~P~~-----------------~~~~~~~~~~~~vQv~rS~~~~s~~ 468 (662)
||++.++...|+++|..+++..-.+... ..|.. ....++..+...+++...+
T Consensus 176 g~~la~~~~~fi~~~~~~~~~v~~l~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~v~p~~------ 244 (451)
T PRK09428 176 NAELADSMVNFIQQNLLNSPAVNRLDQP-----NRPKTKEIKNDIRQFRQRLRDAAYQFQGQANNDELSVTPLV------ 244 (451)
T ss_pred CchHHHHHHHHHHHHhhccCcccccccc-----ccccchhhHHHHHHHHHHHhhhccCcccccCCCCeEEeeee------
Confidence 9999999999999998765421000000 00000 0000101111123333221
Q ss_pred CCCCChhHHhhcccccCCCCcchhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHH
Q 006070 469 GFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIV 548 (662)
Q Consensus 469 ~~p~~~~~~~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~ 548 (662)
|.+. ...+.+.++.+|.+|++.|+|.||||+|+. .+..+|.
T Consensus 245 ----------------g~g~--~~~l~~~~~~li~~A~~~i~I~TPYF~p~~---------------------~l~~~L~ 285 (451)
T PRK09428 245 ----------------GLGK--KNLLNKTIFHLMASAEQKLTICTPYFNLPA---------------------ILVRNII 285 (451)
T ss_pred ----------------ccCC--chHHHHHHHHHHhccCcEEEEEeCCcCCCH---------------------HHHHHHH
Confidence 1111 257889999999999999999999999975 7899999
Q ss_pred HHHhcCCceEEEEEecCC
Q 006070 549 SKIEAGERFTVYIVVPMW 566 (662)
Q Consensus 549 ~A~~~g~~~~V~Iv~P~~ 566 (662)
.|+++| ++|.||+|..
T Consensus 286 ~a~~rG--v~V~Ii~~~~ 301 (451)
T PRK09428 286 RLLRRG--KKVEIIVGDK 301 (451)
T ss_pred HHHhcC--CcEEEEcCCc
Confidence 999999 9999999975
No 13
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.96 E-value=3e-28 Score=233.15 Aligned_cols=140 Identities=56% Similarity=0.945 Sum_probs=123.1
Q ss_pred cccceeEEEEEEEEEeecCCCCCC-----CCccccccC-------------CCCCCCCCcEEEEEECCeeeeeeeeecCC
Q 006070 2 AQILLHGTLHVTIYEVDQLESGGG-----GNFFTKLLG-------------GLGKGGSELYATIDLEKARVGRTRMLKKE 63 (662)
Q Consensus 2 ~~~~~~G~L~V~I~eA~~L~~~~~-----~~~~~~~~~-------------~~~~g~~DPYv~v~l~~~~~~kT~vi~~~ 63 (662)
|.+||||+|+|+|+||++|++++. +++|+++.+ ....|++||||+|++++.+++||+++++
T Consensus 1 ~~~llhG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~- 79 (158)
T cd04015 1 AAVLLHGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIEN- 79 (158)
T ss_pred CceEEeeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCC-
Confidence 457999999999999999999652 234443221 0357889999999999888889999998
Q ss_pred CCCCeeeeEEEEeccCCCceEEEEEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEee
Q 006070 64 QSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYF 142 (662)
Q Consensus 64 t~nP~WNE~F~~~v~~~~~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~ 142 (662)
+.||+|||+|.|++++..+.|+|+|+|+|.+++++||++.+|++++..|...+.|++|.+.++++.++.++|||+++|+
T Consensus 80 ~~nP~WnE~F~~~~~~~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~ 158 (158)
T cd04015 80 SENPVWNESFHIYCAHYASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT 158 (158)
T ss_pred CCCCccceEEEEEccCCCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence 8999999999999988888999999999999999999999999999999999999999988899888899999999994
No 14
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.93 E-value=4.8e-25 Score=201.14 Aligned_cols=119 Identities=18% Similarity=0.321 Sum_probs=105.1
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEE
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIF 86 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~ 86 (662)
.|+|+|+|++|++|++. + .|++||||+|.+++++. ||+|+.+++.||+|||+|+|++++....|.|
T Consensus 1 ~g~L~v~v~~Ak~l~~~------------~-~g~sDPYv~i~lg~~~~-kT~v~~~~~~nP~WNe~F~f~v~~~~~~l~~ 66 (121)
T cd04016 1 VGRLSITVVQAKLVKNY------------G-LTRMDPYCRIRVGHAVY-ETPTAYNGAKNPRWNKTIQCTLPEGVDSIYI 66 (121)
T ss_pred CcEEEEEEEEccCCCcC------------C-CCCCCceEEEEECCEEE-EeEEccCCCCCCccCeEEEEEecCCCcEEEE
Confidence 48999999999998863 2 46899999999998875 9999987689999999999999877778999
Q ss_pred EEEecCCCC-CceeEEEEeeee-eecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 87 TVKDDNPIG-ATLIGRAYVPVE-EVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 87 ~V~D~d~~~-~~~IG~~~ipl~-~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
+|||+|.++ |++||++.||+. .+..|+..+.|++|.+.++++ ..|+|||+|+|
T Consensus 67 ~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~--~~g~i~l~l~y 121 (121)
T cd04016 67 EIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGED--KEGMINLVFSY 121 (121)
T ss_pred EEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCCC--CceEEEEEEeC
Confidence 999999998 699999999996 688898899999998766654 57999999987
No 15
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.90 E-value=4.6e-23 Score=189.32 Aligned_cols=115 Identities=19% Similarity=0.298 Sum_probs=102.7
Q ss_pred EEEEEEEEeec---CCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEE
Q 006070 9 TLHVTIYEVDQ---LESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNII 85 (662)
Q Consensus 9 ~L~V~I~eA~~---L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~ 85 (662)
.|+|+|++|+| |+. ++..|++||||+|++++++ .||+++++ ++||+|||+|.|++.+....|+
T Consensus 1 ~L~v~v~~A~~~~~l~~------------~d~~g~sDPYv~i~~g~~~-~rTk~~~~-~~nP~WnE~f~f~v~~~~~~l~ 66 (126)
T cd08379 1 ILEVGILGAQGLDVLRA------------KDGRGSTDAYCVAKYGPKW-VRTRTVED-SSNPRWNEQYTWPVYDPCTVLT 66 (126)
T ss_pred CeEEEEEEeECCccccc------------cccCCCCCeeEEEEECCEE-eEcCcccC-CCCCcceeEEEEEecCCCCEEE
Confidence 38999999999 554 3567899999999999876 49999999 9999999999999988778999
Q ss_pred EEEEecCCC-------CCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEE
Q 006070 86 FTVKDDNPI-------GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHV 137 (662)
Q Consensus 86 ~~V~D~d~~-------~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l 137 (662)
|+|||++.+ ++++||++.|+|+++..+...+.||+|.+.++++.+..|+|++
T Consensus 67 v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~ 125 (126)
T cd08379 67 VGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC 125 (126)
T ss_pred EEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence 999999987 6899999999999999999999999999877667778898875
No 16
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.89 E-value=1.7e-22 Score=189.44 Aligned_cols=124 Identities=23% Similarity=0.295 Sum_probs=109.7
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEE
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNII 85 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~ 85 (662)
+...|.|.|+||++|+.+ .||||+|.|++++++||+++.+ +.||+|||.|+|++.+..+.|+
T Consensus 9 ~~~sL~v~V~EAk~Lp~~-----------------~~~Y~~i~Ld~~~vaRT~v~~~-~~nP~W~E~F~f~~~~~~~~l~ 70 (146)
T cd04013 9 TENSLKLWIIEAKGLPPK-----------------KRYYCELCLDKTLYARTTSKLK-TDTLFWGEHFEFSNLPPVSVIT 70 (146)
T ss_pred EEEEEEEEEEEccCCCCc-----------------CCceEEEEECCEEEEEEEEEcC-CCCCcceeeEEecCCCcccEEE
Confidence 456899999999999873 3899999999999999999999 9999999999999988888999
Q ss_pred EEEEe-cCCC----CCceeEEEEeeeeeecCCceEEEEEeccCCCCCC-------CCCCCceEEEEEeeccccc
Q 006070 86 FTVKD-DNPI----GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP-------ISSGSKIHVKLQYFDVTKD 147 (662)
Q Consensus 86 ~~V~D-~d~~----~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~-------~k~~G~i~l~l~f~~~~~~ 147 (662)
|+|++ .+.. ++++||++.||++++..|+.++.||||++.++++ .+..++|||+++|.++.-.
T Consensus 71 v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~~~l 144 (146)
T cd04013 71 VNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQSTRVL 144 (146)
T ss_pred EEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEeeeC
Confidence 99964 4444 4689999999999999999999999999888876 5677999999999987643
No 17
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.88 E-value=3.1e-22 Score=184.46 Aligned_cols=117 Identities=21% Similarity=0.379 Sum_probs=100.9
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccC------CCce
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAH------MASN 83 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~------~~~~ 83 (662)
|+|+|++|+||+++ +..|++||||+|.+++.+ .||+++++ +.||+|||+|.|.+.. ....
T Consensus 1 ~~V~V~~A~~L~~~------------d~~g~~dpYv~v~l~~~~-~kT~v~~~-t~nP~Wne~f~F~v~~~~~~~~~~~~ 66 (126)
T cd08682 1 VQVTVLQARGLLCK------------GKSGTNDAYVIIQLGKEK-YSTSVKEK-TTSPVWKEECSFELPGLLSGNGNRAT 66 (126)
T ss_pred CEEEEEECcCCcCC------------CCCcCCCceEEEEECCee-eeeeeecC-CCCCEeCceEEEEecCcccCCCcCCE
Confidence 57999999999973 456789999999998766 59999999 9999999999998876 3478
Q ss_pred EEEEEEecCCCC-CceeEEEEeeeeeec--CCceEEEEEeccCCCCCCCCCCCceEEEEE
Q 006070 84 IIFTVKDDNPIG-ATLIGRAYVPVEEVL--GGEEVDKWVEILDEDRNPISSGSKIHVKLQ 140 (662)
Q Consensus 84 L~~~V~D~d~~~-~~~IG~~~ipl~~l~--~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~ 140 (662)
|.|+|+|++.++ +++||++.|+|+++. .+...+.||+|.++.+++.+..|+|+|+++
T Consensus 67 l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~ 126 (126)
T cd08682 67 LQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ 126 (126)
T ss_pred EEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence 999999999987 799999999999988 677889999998766655456899999875
No 18
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.88 E-value=8.1e-22 Score=180.30 Aligned_cols=119 Identities=17% Similarity=0.237 Sum_probs=106.3
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTVK 89 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V~ 89 (662)
|+|+|++|++|++. +..|++||||++.+++....||+++++ +.||+|||+|.|.+.+..+.|.|+||
T Consensus 2 L~v~v~~a~~L~~~------------d~~g~~Dpyv~v~~~~~~~~kT~~~~~-t~nP~Wne~f~f~v~~~~~~l~~~v~ 68 (121)
T cd04042 2 LDIHLKEGRNLAAR------------DRGGTSDPYVKFKYGGKTVYKSKTIYK-NLNPVWDEKFTLPIEDVTQPLYIKVF 68 (121)
T ss_pred eEEEEEEeeCCCCc------------CCCCCCCCeEEEEECCEEEEEeeeccC-CCCCccceeEEEEecCCCCeEEEEEE
Confidence 78999999999973 446789999999998866789999999 99999999999999876789999999
Q ss_pred ecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 90 DDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 90 D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
|+|.++ +++||.+.++++++..++..+.|++|.++.+. +..|+|+|.++|+|
T Consensus 69 D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--~~~G~l~l~~~~~~ 121 (121)
T cd04042 69 DYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--EDLGYISLVVTLTP 121 (121)
T ss_pred eCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--cCceEEEEEEEECC
Confidence 999985 79999999999999999999999999876542 46899999999976
No 19
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.87 E-value=1.4e-21 Score=180.17 Aligned_cols=120 Identities=18% Similarity=0.337 Sum_probs=102.3
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC-ceEE
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA-SNII 85 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~-~~L~ 85 (662)
+..|+|+|++|+||++. +++||||+|.+++.+++||++ ++ +.||+|||+|.|++.... ..++
T Consensus 3 ~~~L~V~Vi~A~~L~~~---------------~~~DPYv~v~l~~~~~~kT~v-~~-~~nP~WnE~f~f~~~~~~~~~l~ 65 (126)
T cd08400 3 VRSLQLNVLEAHKLPVK---------------HVPHPYCVISLNEVKVARTKV-RE-GPNPVWSEEFVFDDLPPDVNSFT 65 (126)
T ss_pred eeEEEEEEEEeeCCCCC---------------CCCCeeEEEEECCEeEEEeec-CC-CCCCccCCEEEEecCCCCcCEEE
Confidence 46799999999999862 468999999999877779997 45 899999999999875443 5789
Q ss_pred EEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 86 FTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 86 ~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
|.|+|++.++ +++||++.|||.++..|...+.||+|...++++.+..|+|+|+++|.+
T Consensus 66 v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~ 124 (126)
T cd08400 66 ISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSH 124 (126)
T ss_pred EEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEc
Confidence 9999999887 799999999999999999999999998754433346799999999975
No 20
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.87 E-value=1.7e-21 Score=178.30 Aligned_cols=119 Identities=21% Similarity=0.328 Sum_probs=102.3
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTVK 89 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V~ 89 (662)
|.|+|++|+||++++ ...|++||||+|+++++.++||+++++ |+||+|||+|.|.+++....|.|.|+
T Consensus 2 l~v~v~~a~~L~~~~-----------~~~g~sDpYv~v~l~~~~~~kT~v~~k-t~~P~WnE~F~f~v~~~~~~l~~~v~ 69 (121)
T cd08401 2 LKIKIGEAKNLPPRS-----------GPNKMRDCYCTVNLDQEEVFRTKTVEK-SLCPFFGEDFYFEIPRTFRHLSFYIY 69 (121)
T ss_pred eEEEEEEccCCCCCC-----------CCCCCcCcEEEEEECCccEEEeeEEEC-CCCCccCCeEEEEcCCCCCEEEEEEE
Confidence 789999999999741 124679999999998877789999999 99999999999999876679999999
Q ss_pred ecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 90 DDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 90 D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
|++.++ +++||++.++++++..+...+.||+|...... .+..|+|||+++|
T Consensus 70 d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~-~~~~G~i~l~~~~ 121 (121)
T cd08401 70 DRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDAD-SEVQGKVHLELRL 121 (121)
T ss_pred ECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCC-CcccEEEEEEEEC
Confidence 999986 69999999999999988889999999753221 2357999999886
No 21
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.86 E-value=3.9e-21 Score=182.29 Aligned_cols=122 Identities=22% Similarity=0.337 Sum_probs=103.5
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC-ceEEEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA-SNIIFT 87 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~-~~L~~~ 87 (662)
.|+|+|++|++|++. +..|++||||+|.+++++ .||+++.+.|.||+|||+|.|.+.++. +.|.|+
T Consensus 1 ~L~V~Vi~A~~L~~~------------d~~g~sDPYV~v~l~~~~-~kTk~~~~~t~nP~WNE~F~f~v~~~~~~~l~v~ 67 (150)
T cd04019 1 YLRVTVIEAQDLVPS------------DKNRVPEVFVKAQLGNQV-LRTRPSQTRNGNPSWNEELMFVAAEPFEDHLILS 67 (150)
T ss_pred CEEEEEEEeECCCCC------------CCCCCCCeEEEEEECCEE-eeeEeccCCCCCCcccCcEEEEecCccCCeEEEE
Confidence 389999999999974 456789999999999864 599999774699999999999997654 689999
Q ss_pred EEecCCCC-CceeEEEEeeeeeecCC----ceEEEEEeccCCCC-----CCCCCCCceEEEEEeec
Q 006070 88 VKDDNPIG-ATLIGRAYVPVEEVLGG----EEVDKWVEILDEDR-----NPISSGSKIHVKLQYFD 143 (662)
Q Consensus 88 V~D~d~~~-~~~IG~~~ipl~~l~~g----~~~~~w~~L~~~~~-----k~~k~~G~i~l~l~f~~ 143 (662)
|+|++..+ +++||++.|||+++..+ ...+.||+|.+..+ |+.+..|+|+|.+.|.+
T Consensus 68 V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~ 133 (150)
T cd04019 68 VEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDG 133 (150)
T ss_pred EEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecC
Confidence 99999875 79999999999998753 55789999987654 55567899999999963
No 22
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.85 E-value=3.5e-21 Score=175.09 Aligned_cols=117 Identities=20% Similarity=0.318 Sum_probs=100.7
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC-CceEEE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM-ASNIIF 86 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-~~~L~~ 86 (662)
|+|+|+|++|++|++. +..+++||||+|++++.+ .||+++.+++.||+|||+|.|++.+. .+.|.|
T Consensus 1 g~L~V~v~~A~~L~~~------------~~~~~~dpyv~v~~~~~~-~kT~~~~~~~~nP~Wne~f~f~v~~~~~~~l~i 67 (118)
T cd08681 1 GTLVVVVLKARNLPNK------------RKLDKQDPYCVLRIGGVT-KKTKTDFRGGQHPEWDEELRFEITEDKKPILKV 67 (118)
T ss_pred CEEEEEEEEccCCCCC------------CcCCCCCceEEEEECCCc-cccccccCCCCCCccCceEEEEecCCCCCEEEE
Confidence 7899999999999974 345779999999998754 68999866589999999999999764 478999
Q ss_pred EEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 87 TVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 87 ~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
+|||++..++++||++.+++.++..+...+.|++|.. +++ ..|+|+|+++|
T Consensus 68 ~v~d~~~~~~~~iG~~~~~l~~~~~~~~~~~w~~L~~-~~~---~~G~i~l~l~f 118 (118)
T cd08681 68 AVFDDDKRKPDLIGDTEVDLSPALKEGEFDDWYELTL-KGR---YAGEVYLELTF 118 (118)
T ss_pred EEEeCCCCCCcceEEEEEecHHHhhcCCCCCcEEecc-CCc---EeeEEEEEEEC
Confidence 9999998888999999999999987777899999974 333 56999999987
No 23
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.83 E-value=4.4e-20 Score=170.12 Aligned_cols=122 Identities=20% Similarity=0.336 Sum_probs=103.7
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC-eeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK-ARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTV 88 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~-~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V 88 (662)
|.|+|++|+||+. ..|++||||++++++ ....||+++++ +.||+|||+|.|.+......|.|+|
T Consensus 1 l~v~v~~A~~L~~--------------~~g~~dpyv~v~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~~~v 65 (126)
T cd08678 1 LLVKNIKANGLSE--------------AAGSSNPYCVLEMDEPPQKYQSSTQKN-TSNPFWDEHFLFELSPNSKELLFEV 65 (126)
T ss_pred CEEEEEEecCCCC--------------CCCCcCCEEEEEECCCCcEEEeEEEec-CCCCccCceEEEEeCCCCCEEEEEE
Confidence 6799999999985 246799999999974 33469999999 9999999999999976567899999
Q ss_pred EecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeecccc
Q 006070 89 KDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDVTK 146 (662)
Q Consensus 89 ~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~ 146 (662)
||++..+ +++||++.+++.++..++..+.|++|..+.++..+..|+|+++++|.+..+
T Consensus 66 ~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~~ 124 (126)
T cd08678 66 YDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPAE 124 (126)
T ss_pred EECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEecccc
Confidence 9999987 699999999999999888888999997654433346899999999987653
No 24
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.83 E-value=4.7e-20 Score=170.13 Aligned_cols=119 Identities=20% Similarity=0.268 Sum_probs=100.3
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC----ceE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA----SNI 84 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~----~~L 84 (662)
.|.|+|++|++|++. +..|.+||||+|++++++ .||+++++ +.||+|||+|.|.+.+.. ..|
T Consensus 1 ~L~V~vi~A~~L~~~------------d~~g~~dpyv~v~~~~~~-~rT~v~~~-t~nP~Wne~f~f~~~~~~~~~~~~l 66 (127)
T cd04022 1 KLVVEVVDAQDLMPK------------DGQGSSSAYVELDFDGQK-KRTRTKPK-DLNPVWNEKLVFNVSDPSRLSNLVL 66 (127)
T ss_pred CeEEEEEEeeCCCCC------------CCCCCcCcEEEEEECCEE-ecceeEcC-CCCCccceEEEEEccCHHHccCCeE
Confidence 489999999999973 446789999999999876 49999998 999999999999987542 479
Q ss_pred EEEEEecCCC--CCceeEEEEeeeeeec-CCceEEEEEeccCCCCCCCCCCCceEEEEEee
Q 006070 85 IFTVKDDNPI--GATLIGRAYVPVEEVL-GGEEVDKWVEILDEDRNPISSGSKIHVKLQYF 142 (662)
Q Consensus 85 ~~~V~D~d~~--~~~~IG~~~ipl~~l~-~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~ 142 (662)
.|+|||.+.+ ++++||++.|+++++. .++....||+|..+ ++.-+..|+|+|++.|+
T Consensus 67 ~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~-~~~~~~~G~l~l~~~~~ 126 (127)
T cd04022 67 EVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKR-GLFSRVRGEIGLKVYIT 126 (127)
T ss_pred EEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeC-CCCCCccEEEEEEEEEc
Confidence 9999999987 4799999999999998 57778899999754 22123579999999986
No 25
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.83 E-value=1e-19 Score=169.09 Aligned_cols=126 Identities=25% Similarity=0.477 Sum_probs=103.3
Q ss_pred ceeEEEEEEEEEeecCCCCCCCCccccc-cCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCce
Q 006070 5 LLHGTLHVTIYEVDQLESGGGGNFFTKL-LGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASN 83 (662)
Q Consensus 5 ~~~G~L~V~I~eA~~L~~~~~~~~~~~~-~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~ 83 (662)
++.|.|+|+|++|++|++.+ ..++. ......|.+||||+|.++++++.||+++++ +.||+|||+|.|++. ..+.
T Consensus 1 ~~~g~l~V~v~~a~~L~~~d---~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~-~~~~ 75 (132)
T cd04014 1 MFTGTLKIKICEAVDLKPTD---WSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPK-TNSPVWNEEFTTEVH-NGRN 75 (132)
T ss_pred CcceEEEEEEEEecCCCCCC---chhhhcccccCccCcCcEEEEEECCEEEeEEeEcCC-CCCCCcceeEEEEcC-CCCE
Confidence 46899999999999998742 21000 000124689999999999888789999998 999999999999997 4578
Q ss_pred EEEEEEecCCCC-CceeEEEEeeeeeecC--CceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 84 IIFTVKDDNPIG-ATLIGRAYVPVEEVLG--GEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 84 L~~~V~D~d~~~-~~~IG~~~ipl~~l~~--g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
|.|.|+|++.++ +++||++.++|+++.. +...+.|++|. ..|+|+++++|..
T Consensus 76 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--------~~G~l~l~~~~~~ 130 (132)
T cd04014 76 LELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--------PQGKLHVKIELKG 130 (132)
T ss_pred EEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--------CCcEEEEEEEEec
Confidence 999999998876 6999999999999997 67789999994 3589999999864
No 26
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.82 E-value=8.8e-20 Score=166.96 Aligned_cols=112 Identities=18% Similarity=0.363 Sum_probs=96.9
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC-CceEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM-ASNIIFTV 88 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-~~~L~~~V 88 (662)
|.|+|++|+||+.. ++||||+|++++. ..||+++++ +.||+|||+|.|.+.+. ...|.|+|
T Consensus 2 L~V~Vi~a~~L~~~----------------~~Dpyv~v~l~~~-~~kT~v~~~-t~nP~Wne~F~f~~~~~~~~~L~~~v 63 (121)
T cd08378 2 LYVRVVKARGLPAN----------------SNDPVVEVKLGNY-KGSTKAIER-TSNPEWNQVFAFSKDRLQGSTLEVSV 63 (121)
T ss_pred EEEEEEEecCCCcc----------------cCCCEEEEEECCc-cccccccCC-CCCCccceEEEEEcCCCcCCEEEEEE
Confidence 89999999999861 5899999999875 469999999 99999999999998764 57899999
Q ss_pred EecCCCCCceeEEEEeeeeeecCC-----ceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 89 KDDNPIGATLIGRAYVPVEEVLGG-----EEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 89 ~D~d~~~~~~IG~~~ipl~~l~~g-----~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
||+|.+++++||++.++++++..+ ...+.||+|.+..+. +..|+|+|+++|
T Consensus 64 ~d~d~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--~~~G~i~l~~~~ 119 (121)
T cd08378 64 WDKDKAKDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--RVGGELMLAVWF 119 (121)
T ss_pred EeCCCCcCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--ccceEEEEEEEe
Confidence 999988889999999999998753 245789999876542 467999999998
No 27
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.82 E-value=2.1e-19 Score=162.90 Aligned_cols=113 Identities=18% Similarity=0.257 Sum_probs=99.0
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC-CceEEEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM-ASNIIFT 87 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-~~~L~~~ 87 (662)
.|+|+|++|++|++. +..+++||||++++++.+ .||+++++ |.||+|||+|.|.+.+. ...|.|+
T Consensus 1 ~~~V~v~~a~~L~~~------------~~~~~~dPyv~v~~~~~~-~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~v~ 66 (116)
T cd08376 1 VVTIVLVEGKNLPPM------------DDNGLSDPYVKFRLGNEK-YKSKVCSK-TLNPQWLEQFDLHLFDDQSQILEIE 66 (116)
T ss_pred CEEEEEEEEECCCCC------------CCCCCCCcEEEEEECCEe-EecccccC-CCCCceeEEEEEEecCCCCCEEEEE
Confidence 378999999999974 345789999999998765 69999999 99999999999998765 5789999
Q ss_pred EEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEee
Q 006070 88 VKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYF 142 (662)
Q Consensus 88 V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~ 142 (662)
|||++.++ +++||++.++|+++..++..+.|++|.+ ..|+|++.+.|+
T Consensus 67 v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~-------~~G~~~~~~~~~ 115 (116)
T cd08376 67 VWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELED-------GEGSLLLLLTLT 115 (116)
T ss_pred EEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccC-------CCcEEEEEEEec
Confidence 99999986 6999999999999999889999999953 248999998875
No 28
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.82 E-value=1.1e-19 Score=166.29 Aligned_cols=120 Identities=25% Similarity=0.372 Sum_probs=100.8
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC-eeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK-ARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIF 86 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~-~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~ 86 (662)
|.|+|+|++|++|++.+ ...+.+||||+|.+++ ....||+++++ +.||+|||.|.|.+.+..+.|.|
T Consensus 2 g~l~v~v~~a~~L~~~~-----------~~~~~~dpyv~v~~~~~~~~~kT~~~~~-~~~P~Wne~~~~~v~~~~~~l~~ 69 (124)
T cd04044 2 GVLAVTIKSARGLKGSD-----------IIGGTVDPYVTFSISNRRELARTKVKKD-TSNPVWNETKYILVNSLTEPLNL 69 (124)
T ss_pred eEEEEEEEcccCCCccc-----------ccCCCCCCeEEEEECCCCcceEeeeecC-CCCCcceEEEEEEeCCCCCEEEE
Confidence 89999999999999631 1245789999999988 46679999998 99999999999998866789999
Q ss_pred EEEecCCCC-CceeEEEEeeeeeecCCceEEE-EEeccCCCCCCCCCCCceEEEEEeec
Q 006070 87 TVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDK-WVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 87 ~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~-w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
+|||++..+ +++||++.++|.++..+...+. |.+| ..+++ ..|+|+++++|.|
T Consensus 70 ~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~-~~~~k---~~G~i~~~l~~~p 124 (124)
T cd04044 70 TVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNL-LRNGK---PVGELNYDLRFFP 124 (124)
T ss_pred EEEecCCCCCCceeEEEEEEHHHhccCccccCcchhh-hcCCc---cceEEEEEEEeCC
Confidence 999999886 6999999999999998776654 4444 34555 4699999999976
No 29
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.82 E-value=1.2e-19 Score=165.31 Aligned_cols=120 Identities=23% Similarity=0.490 Sum_probs=99.8
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccC-CCceEEE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAH-MASNIIF 86 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~-~~~~L~~ 86 (662)
|.|+|+|++|++|++.+. .++ +...|++||||+|++++. ..||+++++ +.||+|||+|.|.+.+ ..+.|.|
T Consensus 1 g~l~v~v~~a~~L~~~d~--~~~----~~~~g~~dPyv~v~~~~~-~~kT~~~~~-t~~P~W~e~f~~~v~~~~~~~l~i 72 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDK--FVG----GLVKGKSDPYVIVRVGAQ-TFKSKVIKE-NLNPKWNEVYEAVVDEVPGQELEI 72 (121)
T ss_pred CeEEEEEEEccCCccccc--ccc----cCCCCCcCCEEEEEECCE-eEEccccCC-CCCCcccceEEEEeCCCCCCEEEE
Confidence 789999999999997421 000 012468999999999884 579999999 9999999999999864 3579999
Q ss_pred EEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 87 TVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 87 ~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
+|+|++..++++||.+.+++.++..+...+.||+|.+. ..|+|+++++|
T Consensus 73 ~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~------~~G~~~~~~~~ 121 (121)
T cd08391 73 ELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDV------KSGRLHLKLEW 121 (121)
T ss_pred EEEecCCCCCCcEEEEEEEHHHhcccCccceEEECcCC------CCceEEEEEeC
Confidence 99999988789999999999999988788999999642 46899999876
No 30
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.82 E-value=1.7e-19 Score=165.11 Aligned_cols=118 Identities=22% Similarity=0.382 Sum_probs=99.5
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTV 88 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V 88 (662)
.|.|+|++|++|++. +..|++||||+|.+++..++||+++++ ++||+|||.|.|++.+....|.|.|
T Consensus 1 ~l~v~vi~a~~L~~~------------d~~g~~DPYv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~~~~~l~v~v 67 (121)
T cd04054 1 SLYIRIVEGKNLPAK------------DITGSSDPYCIVKVDNEVIIRTATVWK-TLNPFWGEEYTVHLPPGFHTVSFYV 67 (121)
T ss_pred CEEEEEEEeeCCcCC------------CCCCCCCceEEEEECCEeeeeeeeEcC-CCCCcccceEEEeeCCCCCEEEEEE
Confidence 389999999999974 446789999999998877789999999 9999999999999987668999999
Q ss_pred EecCCCC-CceeEEEEeeeeeecCC-ceEEEEEeccCCCCCCCCCCCceEEEEE
Q 006070 89 KDDNPIG-ATLIGRAYVPVEEVLGG-EEVDKWVEILDEDRNPISSGSKIHVKLQ 140 (662)
Q Consensus 89 ~D~d~~~-~~~IG~~~ipl~~l~~g-~~~~~w~~L~~~~~k~~k~~G~i~l~l~ 140 (662)
||++.++ +++||++.++++++..+ ...+.|++|.+.++. .+..|+|++.++
T Consensus 68 ~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~~~~-~~~~G~i~l~~~ 120 (121)
T cd04054 68 LDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEVDPD-EEVQGEIHLELS 120 (121)
T ss_pred EECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeeeCCC-CccccEEEEEEE
Confidence 9999987 69999999999888754 457899999753322 125799988875
No 31
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.82 E-value=1.9e-19 Score=164.12 Aligned_cols=113 Identities=19% Similarity=0.298 Sum_probs=96.1
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC--eeeeeeeeecCCCCCCeeeeEEEEeccCCC-ceEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK--ARVGRTRMLKKEQSNPRWYESFHIYCAHMA-SNIIF 86 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~-~~L~~ 86 (662)
|.|+|++|++|++. +..+++||||+|.+.+ ....||+++++ +.||+|||+|.|.+.... ..|.|
T Consensus 2 L~V~vi~a~~L~~~------------~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~-t~nP~Wne~f~f~i~~~~~~~l~v 68 (119)
T cd04036 2 LTVRVLRATNITKG------------DLLSTPDCYVELWLPTASDEKKRTKTIKN-SINPVWNETFEFRIQSQVKNVLEL 68 (119)
T ss_pred eEEEEEEeeCCCcc------------CCCCCCCcEEEEEEcCCCCccCccceecC-CCCCccceEEEEEeCcccCCEEEE
Confidence 78999999999973 3356799999999963 34569999999 999999999999986543 57999
Q ss_pred EEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 87 TVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 87 ~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
+|||+|.+++++||++.+++.++..|...+.|++|.+. +.|+|++++.+
T Consensus 69 ~v~d~d~~~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~------~~g~l~~~~~~ 117 (119)
T cd04036 69 TVMDEDYVMDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ------GKEELEVEFLL 117 (119)
T ss_pred EEEECCCCCCcccEEEEEEHHHCCCCCcEEEEEECCCC------CCceEEEEEEe
Confidence 99999988779999999999999999999999999532 45788877765
No 32
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.81 E-value=2.3e-19 Score=163.26 Aligned_cols=117 Identities=22% Similarity=0.402 Sum_probs=100.5
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFT 87 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~ 87 (662)
|.|+|+|++|++|++. +..+++||||+|++++.. .||+++++ +.||+|||+|.|++.+..+.|.|+
T Consensus 1 g~l~v~v~~a~~L~~~------------~~~~~~dPyv~v~~~~~~-~~T~~~~~-t~nP~W~e~f~~~~~~~~~~l~~~ 66 (119)
T cd08377 1 GFLQVKVIRASGLAAA------------DIGGKSDPFCVLELVNAR-LQTHTIYK-TLNPEWNKIFTFPIKDIHDVLEVT 66 (119)
T ss_pred CEEEEEEEeeeCCCCC------------CCCCCCCcEEEEEECCEe-eecceecC-CcCCccCcEEEEEecCcCCEEEEE
Confidence 7899999999999974 335679999999998765 59999999 999999999999998767899999
Q ss_pred EEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 88 VKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 88 V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
|+|++.++ +++||++.+++.++..+. ..|++|.++.++. +..|+|+|+++|
T Consensus 67 v~d~~~~~~~~~iG~~~~~l~~~~~~~--~~~~~l~~~~~~~-~~~G~i~l~~~~ 118 (119)
T cd08377 67 VYDEDKDKKPEFLGKVAIPLLSIKNGE--RKWYALKDKKLRT-RAKGSILLEMDV 118 (119)
T ss_pred EEECCCCCCCceeeEEEEEHHHCCCCC--ceEEECcccCCCC-ceeeEEEEEEEe
Confidence 99999875 699999999999998664 5799998654432 368999999987
No 33
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.81 E-value=2e-19 Score=163.87 Aligned_cols=101 Identities=15% Similarity=0.248 Sum_probs=85.6
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC-----C-eeeeeeeeecCCCCCCeeeeEEEEeccCC--
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE-----K-ARVGRTRMLKKEQSNPRWYESFHIYCAHM-- 80 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~-----~-~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-- 80 (662)
.|+|+|++|++|+.. + .|++||||+|++- . .+..||+++++ |+||+|||+|.|.+...
T Consensus 1 kL~V~Vi~A~~L~~~------------d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~-tlnPvwNE~f~F~v~~~~~ 66 (120)
T cd08395 1 KVTVKVVAANDLKWQ------------T-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNN-NWSPKYNETFQFILGNEDD 66 (120)
T ss_pred CEEEEEEECcCCCcc------------c-CCCCCCEEEEEEecCCCcccccEeeeEEecC-CCCCccCcEEEEEeeCcCC
Confidence 389999999999873 3 3789999999983 2 23458999988 99999999999998632
Q ss_pred --CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccC
Q 006070 81 --ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILD 123 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 123 (662)
...|.|.|+|+|..+ +++||++.||++++..++..+.|++|..
T Consensus 67 ~~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~ 112 (120)
T cd08395 67 PESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR 112 (120)
T ss_pred CceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence 246999999999876 6899999999999999999999999953
No 34
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.81 E-value=3e-19 Score=164.54 Aligned_cols=120 Identities=21% Similarity=0.378 Sum_probs=100.1
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCC--CCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccC-CCceE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLG--KGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAH-MASNI 84 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~--~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~-~~~~L 84 (662)
|.|.|+|++|++|++. +. .+.+||||+|.+++.+ .||+++++ +.||+|||+|.|++.+ ..+.|
T Consensus 1 g~l~v~v~~a~~L~~~------------~~~~~~~~dPyv~v~~~~~~-~kT~~~~~-t~~P~Wne~f~~~~~~~~~~~l 66 (128)
T cd04024 1 GVLRVHVVEAKDLAAK------------DRSGKGKSDPYAILSVGAQR-FKTQTIPN-TLNPKWNYWCEFPIFSAQNQLL 66 (128)
T ss_pred CEEEEEEEEeeCCCcc------------cCCCCCCcCCeEEEEECCEE-EecceecC-CcCCccCCcEEEEecCCCCCEE
Confidence 7899999999999973 33 5789999999998765 59999999 9999999999999986 35799
Q ss_pred EEEEEecCCCC-CceeEEEEeeeeeecC---CceEEEEEeccCCC-CCCCCCCCceEEEEEe
Q 006070 85 IFTVKDDNPIG-ATLIGRAYVPVEEVLG---GEEVDKWVEILDED-RNPISSGSKIHVKLQY 141 (662)
Q Consensus 85 ~~~V~D~d~~~-~~~IG~~~ipl~~l~~---g~~~~~w~~L~~~~-~k~~k~~G~i~l~l~f 141 (662)
.|+|||++.++ +++||++.+++.++.. ....+.||+|.+.. ++..+..|+|+|+++|
T Consensus 67 ~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~ 128 (128)
T cd04024 67 KLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW 128 (128)
T ss_pred EEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence 99999999885 7999999999999873 34568999997653 2222368999998875
No 35
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.80 E-value=1.3e-19 Score=163.44 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=84.7
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC---eeeeeeeeecCCCCCCeeeeEEEEeccCC--
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK---ARVGRTRMLKKEQSNPRWYESFHIYCAHM-- 80 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~---~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-- 80 (662)
..|.|.|+|++|++|+. .|.+||||+|+|.. .+..||+|+++ |+||+|||+|.|.++..
T Consensus 12 ~~~~L~V~vikA~~L~~---------------~g~sDPYVKv~L~~~~k~~k~kT~v~rk-tlnPvfnE~f~F~v~~~~l 75 (118)
T cd08677 12 QKAELHVNILEAENISV---------------DAGCECYISGCVSVSEGQKEAQTALKKL-ALHTQWEEELVFPLPEEES 75 (118)
T ss_pred cCCEEEEEEEEecCCCC---------------CCCCCeEEEEEEcCCcCccEEEcceecC-CCCCccccEEEEeCCHHHh
Confidence 35899999999999983 24589999999942 23459999999 99999999999998753
Q ss_pred -CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEec
Q 006070 81 -ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 121 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L 121 (662)
...|.|+|+|+|.++ +++||++.+|++++..+...++|.+|
T Consensus 76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 257999999999998 69999999999998767777889765
No 36
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.80 E-value=5e-19 Score=164.35 Aligned_cols=120 Identities=21% Similarity=0.306 Sum_probs=99.3
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCe------eeeeeeeecCCCCCCeeeeEEEEeccCCCc
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKA------RVGRTRMLKKEQSNPRWYESFHIYCAHMAS 82 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~------~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~ 82 (662)
+|+|+|++|++|++. +..|++||||+|.+.+. ...||+++++ +.||+|||+|.|.+.....
T Consensus 1 ~L~v~Vi~a~~L~~~------------d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~ 67 (133)
T cd04033 1 ILRVKVLAGIDLAKK------------DIFGASDPYVKISLYDPDGNGEIDSVQTKTIKK-TLNPKWNEEFFFRVNPREH 67 (133)
T ss_pred CEEEEEEEeECCCcc------------cCCCCcCcEEEEEEECCCCCCcccceeeeEEcC-CCCCcEeeEEEEEEcCCCC
Confidence 489999999999973 34577999999999654 1358999998 9999999999999876567
Q ss_pred eEEEEEEecCCCC-CceeEEEEeeeeeecCCc------eEEEEEeccCCCCCCCCCCCceEEEEEee
Q 006070 83 NIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE------EVDKWVEILDEDRNPISSGSKIHVKLQYF 142 (662)
Q Consensus 83 ~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~------~~~~w~~L~~~~~k~~k~~G~i~l~l~f~ 142 (662)
.|.|+|+|++.++ +++||++.+++.++..+. ..+.||+|....++ .+..|+|+|++.|.
T Consensus 68 ~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-~~~~G~l~~~~~~~ 133 (133)
T cd04033 68 RLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-SRVKGHLRLYMAYL 133 (133)
T ss_pred EEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-CcceeEEEEEEeeC
Confidence 8999999999987 699999999999988653 35689999754332 24689999999983
No 37
>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=99.79 E-value=1.4e-19 Score=169.37 Aligned_cols=97 Identities=24% Similarity=0.437 Sum_probs=88.2
Q ss_pred ceeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceE
Q 006070 5 LLHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNI 84 (662)
Q Consensus 5 ~~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L 84 (662)
++.|.|+|+|++|.||... |..++|||||++.+++++. ||+++++ ++||+|||+|+|.+.++...|
T Consensus 3 ~~vGLL~v~v~~g~~L~~r------------D~~~sSDPyVVl~lg~q~l-kT~~v~~-n~NPeWNe~ltf~v~d~~~~l 68 (168)
T KOG1030|consen 3 MLVGLLRVRVKRGKNLAIR------------DFLGSSDPYVVLELGNQKL-KTRVVYK-NLNPEWNEELTFTVKDPNTPL 68 (168)
T ss_pred ccceEEEEEEEeecCeeee------------ccccCCCCeEEEEECCeee-eeeeecC-CCCCcccceEEEEecCCCceE
Confidence 5899999999999999873 4456799999999999985 8999999 999999999999999999999
Q ss_pred EEEEEecCCCC-CceeEEEEeeeeeecCCceE
Q 006070 85 IFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV 115 (662)
Q Consensus 85 ~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~ 115 (662)
.++|||+|+++ ||+||.|.|||..+...+..
T Consensus 69 kv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 69 KVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred EEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 99999999998 69999999999998866544
No 38
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.79 E-value=8.9e-19 Score=160.60 Aligned_cols=117 Identities=19% Similarity=0.335 Sum_probs=97.9
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC-ceEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA-SNIIFTV 88 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~-~~L~~~V 88 (662)
|+|+|++|++|++. +..+++||||+|++++.+ .||+++++ +.||+|||+|.|.+.+.. ..|.|+|
T Consensus 2 L~v~vi~a~~L~~~------------d~~~~~DPyv~v~~~~~~-~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~l~~~v 67 (123)
T cd04025 2 LRCHVLEARDLAPK------------DRNGTSDPFVRVFYNGQT-LETSVVKK-SCYPRWNEVFEFELMEGADSPLSVEV 67 (123)
T ss_pred EEEEEEEeeCCCCC------------CCCCCcCceEEEEECCEE-EeceeecC-CCCCccCcEEEEEcCCCCCCEEEEEE
Confidence 89999999999874 345679999999998765 59999999 999999999999987653 6899999
Q ss_pred EecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCC---CCCCCCceEEEEE
Q 006070 89 KDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN---PISSGSKIHVKLQ 140 (662)
Q Consensus 89 ~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k---~~k~~G~i~l~l~ 140 (662)
+|++.++ +++||.+.++|.++..+...+.|++|.+...+ ..+..|.|+|.++
T Consensus 68 ~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~~ 123 (123)
T cd04025 68 WDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKVR 123 (123)
T ss_pred EECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEeC
Confidence 9999887 69999999999999887778899999853322 1235688888764
No 39
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.79 E-value=1.2e-18 Score=160.66 Aligned_cols=117 Identities=24% Similarity=0.419 Sum_probs=102.1
Q ss_pred EEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC---CceEEEEEEe
Q 006070 14 IYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKD 90 (662)
Q Consensus 14 I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~---~~~L~~~V~D 90 (662)
|++|++|++ ..|++||||+|++++.+ .||+++++ +.||+|||+|.|++.+. .+.|.|+|+|
T Consensus 2 vi~a~~L~~--------------~~g~~Dpyv~v~~~~~~-~kT~v~~~-~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d 65 (127)
T cd08373 2 VVSLKNLPG--------------LKGKGDRIAKVTFRGVK-KKTRVLEN-ELNPVWNETFEWPLAGSPDPDESLEIVVKD 65 (127)
T ss_pred eEEeeCCcc--------------cCCCCCCEEEEEECCEe-eecceeCC-CcCCcccceEEEEeCCCcCCCCEEEEEEEE
Confidence 789999986 14679999999998865 59999999 99999999999999753 4789999999
Q ss_pred cCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeeccccch
Q 006070 91 DNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDVTKDR 148 (662)
Q Consensus 91 ~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~~~ 148 (662)
++.++ +++||++.++++++..+.....|++|.++++++ ..|+|+++++|.|...+.
T Consensus 66 ~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~--~~~~l~l~~~~~~~~~~~ 122 (127)
T cd08373 66 YEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGRP--TGATISLEVSYQPPDGAV 122 (127)
T ss_pred CCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCCc--ccEEEEEEEEEeCCCCcc
Confidence 99886 699999999999999998999999998776664 468999999999987653
No 40
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.79 E-value=1.6e-18 Score=161.92 Aligned_cols=115 Identities=22% Similarity=0.402 Sum_probs=96.8
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC-ceEE
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA-SNII 85 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~-~~L~ 85 (662)
-|.|.|+|++|++|++. +..|++||||+|.+++.. .||+++++ +.||+|||+|.|.+.+.. +.|.
T Consensus 14 ~G~L~V~Vi~A~~L~~~------------d~~g~~DPYv~v~~~~~~-~kT~vi~~-t~nP~Wne~f~f~v~~~~~~~l~ 79 (136)
T cd08375 14 IGRLMVVIVEGRDLKPC------------NSNGKSDPYCEVSMGSQE-HKTKVVSD-TLNPKWNSSMQFFVKDLEQDVLC 79 (136)
T ss_pred cEEEEEEEEEeeCCCCC------------CCCCCcCcEEEEEECCEe-eeccccCC-CCCCccCceEEEEecCccCCEEE
Confidence 48999999999999974 346789999999998765 69999999 999999999999987644 6899
Q ss_pred EEEEecCCCC-CceeEEEEeeeeeecC-----CceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 86 FTVKDDNPIG-ATLIGRAYVPVEEVLG-----GEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 86 ~~V~D~d~~~-~~~IG~~~ipl~~l~~-----g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
|+|||+|.++ +++||++.+++.++.. ......|.+|. + +..|+|+|++.|
T Consensus 80 i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~---~---~~~g~i~l~~~~ 135 (136)
T cd08375 80 ITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH---E---VPTGEVVVKLDL 135 (136)
T ss_pred EEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc---c---ccceeEEEEEEe
Confidence 9999999887 6999999999999885 33456677773 2 256899999987
No 41
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.79 E-value=5.8e-19 Score=161.80 Aligned_cols=102 Identities=18% Similarity=0.288 Sum_probs=88.2
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEec-cC-
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYC-AH- 79 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v-~~- 79 (662)
..|.|.|+|++|++|++. + .+++||||+|++.. ....||+++++ +.||+|||+|.|++ +.
T Consensus 11 ~~~~L~V~Vi~A~~L~~~------------~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~-~~nP~wnE~F~f~~~~~~ 76 (122)
T cd08381 11 KNGTLFVMVMHAKNLPLL------------D-GSDPDPYVKTYLLPDPQKTTKRKTKVVRK-TRNPTFNEMLVYDGLPVE 76 (122)
T ss_pred eCCEEEEEEEEeeCCCCC------------C-CCCCCCEEEEEEeeCCccCCceeCCccCC-CCCCCcccEEEEecCChH
Confidence 368999999999999973 4 67899999999953 22458999999 99999999999986 32
Q ss_pred --CCceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEec
Q 006070 80 --MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 121 (662)
Q Consensus 80 --~~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L 121 (662)
....|.|+|||+|.++ +++||++.|||+++..++..+.||+|
T Consensus 77 ~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 77 DLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred HhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 2368999999999987 69999999999999988888999997
No 42
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.78 E-value=9e-19 Score=164.73 Aligned_cols=107 Identities=16% Similarity=0.215 Sum_probs=90.3
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCe--eeeeeeeecCCCCCCeeeeEEEEeccCCC
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKA--RVGRTRMLKKEQSNPRWYESFHIYCAHMA 81 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~--~~~kT~vi~~~t~nP~WNE~F~~~v~~~~ 81 (662)
..|.|.|+|++|+||++.+ +..|.+||||+++| ++. ...||+++++ |+||+|||+|.|++....
T Consensus 27 ~~~~L~V~Vi~ArnL~~~~-----------~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kk-tlnPvfNE~F~f~v~l~~ 94 (146)
T cd04028 27 KKGQLEVEVIRARGLVQKP-----------GSKVLPAPYVKVYLLEGKKCIAKKKTKIARK-TLDPLYQQQLVFDVSPTG 94 (146)
T ss_pred CCCEEEEEEEEeeCCCccc-----------CCCCCcCCeEEEEEECCCccccceeceecCC-CCCCccCCeEEEEEcCCC
Confidence 4689999999999998731 23577999999999 332 2459999999 999999999999998555
Q ss_pred ceEEEEEE-ecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCC
Q 006070 82 SNIIFTVK-DDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE 124 (662)
Q Consensus 82 ~~L~~~V~-D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 124 (662)
..|.|+|| |++.++ +++||++.|+|+++..+.....||+|.++
T Consensus 95 ~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~ 139 (146)
T cd04028 95 KTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT 139 (146)
T ss_pred CEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence 78999999 577776 69999999999999878888999999864
No 43
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.78 E-value=5.5e-19 Score=161.19 Aligned_cols=102 Identities=20% Similarity=0.316 Sum_probs=87.7
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
-+|.|.|+|++|+||+++ + .|.+||||+|+|.. ....||+++++ +.||+|||+|.|++++.
T Consensus 10 ~~~~L~V~Vi~ar~L~~~------------~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~-t~~P~~nE~F~f~v~~~~ 75 (119)
T cd08685 10 QNRKLTLHVLEAKGLRST------------N-SGTCNSYVKISLSPDKEVRFRQKTSTVPD-SANPLFHETFSFDVNERD 75 (119)
T ss_pred cCCEEEEEEEEEECCCCC------------C-CCCCCeeEEEEEEeCCCCcceEeCccccC-CCCCccccEEEEEcChHH
Confidence 578999999999999873 3 56799999999953 23458999999 99999999999998653
Q ss_pred -CceEEEEEEecCCCC--CceeEEEEeeeeeecCCceEEEEEec
Q 006070 81 -ASNIIFTVKDDNPIG--ATLIGRAYVPVEEVLGGEEVDKWVEI 121 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~--~~~IG~~~ipl~~l~~g~~~~~w~~L 121 (662)
...|.|+|||.+..+ +++||.+.|||.++..++.++.||.|
T Consensus 76 ~~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 76 YQKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred hCCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 357899999998764 58999999999999988889999986
No 44
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.78 E-value=5.2e-18 Score=156.36 Aligned_cols=121 Identities=18% Similarity=0.211 Sum_probs=99.9
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEE
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIF 86 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~ 86 (662)
++.|+|+|++|++|++. +..|++||||+|.+++++ .||+++++ +.||+|||+|.|.+.+..+.|.|
T Consensus 2 ~~~~~V~v~~A~~L~~~------------d~~g~~dPyv~v~~~~~~-~kT~v~~~-t~nP~Wne~f~f~~~~~~~~l~i 67 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQ------------DSGGGADPYVIIKCEGES-VRSPVQKD-TLSPEFDTQAIFYRKKPRSPIKI 67 (126)
T ss_pred cEEEEEEEEeCcCCCCC------------CCCCCcCccEEEEECCEE-EEeCccCC-CCCCcccceEEEEecCCCCEEEE
Confidence 57899999999999873 345789999999998876 59999998 99999999999998777789999
Q ss_pred EEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCC-CCCCCCceEEEEEeec
Q 006070 87 TVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRN-PISSGSKIHVKLQYFD 143 (662)
Q Consensus 87 ~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k-~~k~~G~i~l~l~f~~ 143 (662)
+|||++.+++++||.+.+++.++.. ....|++|.....+ ..+..|.|.|++++.+
T Consensus 68 ~V~d~~~~~d~~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~ 123 (126)
T cd04046 68 QVWNSNLLCDEFLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSD 123 (126)
T ss_pred EEEECCCCCCCceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEcc
Confidence 9999999889999999999987643 34577888532211 1246799999998765
No 45
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.78 E-value=1.1e-18 Score=160.49 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=95.9
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC-----Cce
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM-----ASN 83 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-----~~~ 83 (662)
+|+|+|++|++|++. +..+++||||+|++++....||+++++++.||+|||+|.|.+.+. ...
T Consensus 1 ~L~V~V~sA~~L~~~------------~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~ 68 (125)
T cd04051 1 TLEITIISAEDLKNV------------NLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLA 68 (125)
T ss_pred CEEEEEEEcccCCCC------------CcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccE
Confidence 589999999999973 335679999999998744469999875589999999999999776 578
Q ss_pred EEEEEEecCCCC-CceeEEEEeeeeeecCCce-----EEEEEeccCCCCCCCCCCCceEE
Q 006070 84 IIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEE-----VDKWVEILDEDRNPISSGSKIHV 137 (662)
Q Consensus 84 L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~-----~~~w~~L~~~~~k~~k~~G~i~l 137 (662)
|.|+|+|++.++ +++||++.|++.++..+.. ...||+|..++|+ ..|.|+|
T Consensus 69 l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~---~~G~~~~ 125 (125)
T cd04051 69 LTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGK---PQGVLNF 125 (125)
T ss_pred EEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCC---cCeEEeC
Confidence 999999999865 7999999999999986554 3689999987776 4688875
No 46
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.77 E-value=1.8e-18 Score=154.14 Aligned_cols=98 Identities=19% Similarity=0.351 Sum_probs=86.2
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC-CceEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM-ASNIIFTV 88 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-~~~L~~~V 88 (662)
|.|+|++|++|++. +..+.+||||+|++++++ .||+++++ +.||+|||+|.|.+.++ .+.|.|+|
T Consensus 2 L~V~v~~A~~L~~~------------~~~~~~dpyv~v~~~~~~-~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~v~v 67 (105)
T cd04050 2 LFVYLDSAKNLPLA------------KSTKEPSPYVELTVGKTT-QKSKVKER-TNNPVWEEGFTFLVRNPENQELEIEV 67 (105)
T ss_pred EEEEEeeecCCCCc------------ccCCCCCcEEEEEECCEE-EeCccccC-CCCCcccceEEEEeCCCCCCEEEEEE
Confidence 88999999999973 346789999999999854 69999998 99999999999999874 47899999
Q ss_pred EecCCCCCceeEEEEeeeeeecCC--ceEEEEEeccC
Q 006070 89 KDDNPIGATLIGRAYVPVEEVLGG--EEVDKWVEILD 123 (662)
Q Consensus 89 ~D~d~~~~~~IG~~~ipl~~l~~g--~~~~~w~~L~~ 123 (662)
+|.+. +++||++.++|.++..+ ...+.||+|.+
T Consensus 68 ~d~~~--~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~ 102 (105)
T cd04050 68 KDDKT--GKSLGSLTLPLSELLKEPDLTLDQPFPLDN 102 (105)
T ss_pred EECCC--CCccEEEEEEHHHhhccccceeeeeEecCC
Confidence 99987 89999999999999864 46899999964
No 47
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.77 E-value=2.9e-18 Score=156.10 Aligned_cols=98 Identities=15% Similarity=0.346 Sum_probs=85.6
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFT 87 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~ 87 (662)
|.|.|+|++|++|+.. +..||||+|++++++ .||+++++ + ||+|||+|.|.+.+..+.|.|+
T Consensus 2 ~~L~V~Vv~Ar~L~~~---------------~~~dPYV~Ik~g~~k-~kT~v~~~-~-nP~WnE~F~F~~~~~~~~L~v~ 63 (127)
T cd08394 2 SLLCVLVKKAKLDGAP---------------DKFNTYVTLKVQNVK-STTIAVRG-S-QPCWEQDFMFEINRLDLGLVIE 63 (127)
T ss_pred ceEEEEEEEeeCCCCC---------------CCCCCeEEEEECCEE-eEeeECCC-C-CCceeeEEEEEEcCCCCEEEEE
Confidence 5799999999999752 346999999998875 58999876 4 9999999999998777779999
Q ss_pred EEecCCCCCceeEEEEeeeeeecCCceE--EEEEeccC
Q 006070 88 VKDDNPIGATLIGRAYVPVEEVLGGEEV--DKWVEILD 123 (662)
Q Consensus 88 V~D~d~~~~~~IG~~~ipl~~l~~g~~~--~~w~~L~~ 123 (662)
|||+|.++||+||++.|||+++..+... ..||+|..
T Consensus 64 V~dkd~~~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~ 101 (127)
T cd08394 64 LWNKGLIWDTLVGTVWIPLSTIRQSNEEGPGEWLTLDS 101 (127)
T ss_pred EEeCCCcCCCceEEEEEEhHHcccCCCCCCCccEecCh
Confidence 9999998899999999999999976554 78999963
No 48
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.77 E-value=2.9e-18 Score=157.84 Aligned_cols=105 Identities=18% Similarity=0.277 Sum_probs=88.5
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
..|.|.|+|++|+||++.+ ...|++||||+|++.. ....||+++++ +.||+|||+|.|++...
T Consensus 13 ~~~~L~V~Vi~a~~L~~~~-----------~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~ 80 (125)
T cd04029 13 KTQSLNVHVKECRNLAYGD-----------EAKKRSNPYVKTYLLPDKSRQSKRKTSIKRN-TTNPVYNETLKYSISHSQ 80 (125)
T ss_pred CCCeEEEEEEEecCCCccC-----------CCCCCCCcEEEEEEEcCCccccceEeeeeeC-CCCCcccceEEEECCHHH
Confidence 3578999999999998731 1246899999999942 22458999998 99999999999998642
Q ss_pred --CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 81 --ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
...|.|+|||+|.++ +++||++.|+|.++...+..+.|+||.
T Consensus 81 l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 81 LETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred hCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 357999999999887 589999999999999888899999983
No 49
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.76 E-value=3e-18 Score=157.28 Aligned_cols=103 Identities=23% Similarity=0.369 Sum_probs=90.0
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCeeeeeeeeecCCCCCCeeeeEEEEeccCC---C
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKARVGRTRMLKKEQSNPRWYESFHIYCAHM---A 81 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~---~ 81 (662)
.|.|.|+|++|++|++. +..|++||||+|++ ++....||+++++ +.||+|||+|.|.+... .
T Consensus 15 ~~~L~V~v~~a~~L~~~------------d~~g~~dpyv~v~l~~~~~~~~kT~v~~~-t~~P~wne~f~f~v~~~~l~~ 81 (124)
T cd08387 15 MGILNVKLIQARNLQPR------------DFSGTADPYCKVRLLPDRSNTKQSKIHKK-TLNPEFDESFVFEVPPQELPK 81 (124)
T ss_pred CCEEEEEEEEeeCCCCC------------CCCCCCCCeEEEEEecCCCCcEeCceEcC-CCCCCcccEEEEeCCHHHhCC
Confidence 47899999999999973 44678999999999 4345679999999 99999999999998653 3
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
..|.|+|+|+|.++ +++||++.|+|+++..++..+.|++|.
T Consensus 82 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 82 RTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred CEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 58999999999887 699999999999999888899999985
No 50
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.76 E-value=2.6e-18 Score=154.47 Aligned_cols=101 Identities=20% Similarity=0.368 Sum_probs=87.1
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCee-eeEEEEeccCC---CceEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRW-YESFHIYCAHM---ASNII 85 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~W-NE~F~~~v~~~---~~~L~ 85 (662)
|+|+|++|++|++++ ...|++||||+|++++. ..||+++++ +.||+| ||+|.|.+++. .+.|.
T Consensus 1 l~V~v~~a~~L~~~d-----------~~~~~~Dpyv~v~~~~~-~~kT~v~~~-~~nP~W~ne~f~f~i~~~~l~~~~l~ 67 (110)
T cd08688 1 LKVRVVAARDLPVMD-----------RSSDLTDAFVEVKFGST-TYKTDVVKK-SLNPVWNSEWFRFEVDDEELQDEPLQ 67 (110)
T ss_pred CEEEEEEEECCCccc-----------cCCCCCCceEEEEECCe-eEecceecC-CCCCcccCcEEEEEcChHHcCCCeEE
Confidence 689999999999741 12577999999999884 569999998 999999 99999998763 36899
Q ss_pred EEEEecCCCC-CceeEEEEeeeeeecC---CceEEEEEeccC
Q 006070 86 FTVKDDNPIG-ATLIGRAYVPVEEVLG---GEEVDKWVEILD 123 (662)
Q Consensus 86 ~~V~D~d~~~-~~~IG~~~ipl~~l~~---g~~~~~w~~L~~ 123 (662)
|+|||+|.++ +++||++.+++.++.. +..++.||+|++
T Consensus 68 i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 68 IRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred EEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 9999999987 5899999999999986 456899999975
No 51
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.76 E-value=5.1e-18 Score=155.74 Aligned_cols=103 Identities=24% Similarity=0.341 Sum_probs=89.2
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC--eeeeeeeeecCCCCCCeeeeEEEEeccCC---C
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK--ARVGRTRMLKKEQSNPRWYESFHIYCAHM---A 81 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~~~~kT~vi~~~t~nP~WNE~F~~~v~~~---~ 81 (662)
.|.|.|+|++|+||++. +..+++||||+|.+.+ .+..||+++++ +.||+|||+|.|.+... .
T Consensus 15 ~~~L~V~v~~a~~L~~~------------d~~~~~dpyv~v~l~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~l~~ 81 (124)
T cd08385 15 SNQLTVGIIQAADLPAM------------DMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFTFKVPYSELGN 81 (124)
T ss_pred CCEEEEEEEEeeCCCCc------------cCCCCCCCEEEEEEEcCCCCceecccCcC-CCCCceeeeEEEeCCHHHhCC
Confidence 48999999999999973 3456799999999943 34569999998 99999999999998642 3
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
..|.|+|||+|.++ +++||++.++|+++..|...+.|++|.
T Consensus 82 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 82 KTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred CEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 58999999999987 699999999999998888999999984
No 52
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.75 E-value=4.5e-18 Score=156.59 Aligned_cols=102 Identities=19% Similarity=0.253 Sum_probs=87.0
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCC-CCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC--
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGK-GGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM-- 80 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~-g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-- 80 (662)
+.|.|+|++|+||+++ +.. |.+||||+|++.. ....||+++++ +.||+|||+|.|++...
T Consensus 15 ~~L~V~vi~a~~L~~~------------d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~-t~nP~~nE~f~f~v~~~~l 81 (125)
T cd08393 15 RELHVHVIQCQDLAAA------------DPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKK-TLNPVFNETLRYKVEREEL 81 (125)
T ss_pred CEEEEEEEEeCCCCCc------------CCCCCCCCcEEEEEEEcCCCccccccCccCcC-CCCCccCceEEEECCHHHh
Confidence 6899999999999974 333 7899999999932 22359999999 99999999999998642
Q ss_pred -CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 81 -ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
...|.|+|||+|.++ +++||++.|||.++..++....||+|+
T Consensus 82 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 82 PTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred CCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 368999999999887 689999999999998777788999984
No 53
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.75 E-value=7.1e-18 Score=159.42 Aligned_cols=103 Identities=19% Similarity=0.317 Sum_probs=86.0
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCe----eeeeeeeecCCCCCCeeeeEEEEecc------
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKA----RVGRTRMLKKEQSNPRWYESFHIYCA------ 78 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~----~~~kT~vi~~~t~nP~WNE~F~~~v~------ 78 (662)
.|.|+|++|+||+. .+|++||||+|++.+. ...||+++++ |.||+|||+|.|++.
T Consensus 1 kL~V~Vi~ArnL~~--------------~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~-t~nP~wNE~F~F~v~~~~~~~ 65 (148)
T cd04010 1 KLSVRVIECSDLAL--------------KNGTCDPYASVTLIYSNKKQDTKRTKVKKK-TNNPQFDEAFYFDVTIDSSPE 65 (148)
T ss_pred CEEEEEEeCcCCCC--------------CCCCCCceEEEEEeCCcccCcccCCccEeC-CCCCccceEEEEEEecccccc
Confidence 38999999999985 2477999999999652 2358999999 999999999999884
Q ss_pred ---------CC-CceEEEEEEecCCCC-CceeEEEEeeeeeecCC-ceEEEEEeccCCCC
Q 006070 79 ---------HM-ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG-EEVDKWVEILDEDR 126 (662)
Q Consensus 79 ---------~~-~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g-~~~~~w~~L~~~~~ 126 (662)
+. ...|.|.|||++.++ +++||++.||+.++..+ .....||+|.+...
T Consensus 66 ~~~~~~~~~~~~~~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~ 125 (148)
T cd04010 66 KKQFEMPEEDAEKLELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREE 125 (148)
T ss_pred cccccCCcccccEEEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCccc
Confidence 11 247899999999876 69999999999999977 67789999976543
No 54
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.75 E-value=7.9e-18 Score=153.84 Aligned_cols=104 Identities=21% Similarity=0.333 Sum_probs=92.3
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFT 87 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~ 87 (662)
|.|+|+|++|++|++. +..+++||||+|++++....||+++++ +.||+|||+|.|++.+..+.|.|+
T Consensus 1 g~L~V~Vi~a~~L~~~------------d~~g~~DPYv~v~~~~~~~~kT~~~~~-t~~P~Wne~f~~~v~~~~~~L~v~ 67 (120)
T cd04045 1 GVLRLHIRKANDLKNL------------EGVGKIDPYVRVLVNGIVKGRTVTISN-TLNPVWDEVLYVPVTSPNQKITLE 67 (120)
T ss_pred CeEEEEEEeeECCCCc------------cCCCCcCCEEEEEECCEEeeceeEECC-CcCCccCceEEEEecCCCCEEEEE
Confidence 7899999999999973 345789999999998877789999988 999999999999998777899999
Q ss_pred EEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCC
Q 006070 88 VKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDED 125 (662)
Q Consensus 88 V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~ 125 (662)
|+|++.++ +++||++.+++.++..+ ..+.||.|++.+
T Consensus 68 v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~ 105 (120)
T cd04045 68 VMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDE 105 (120)
T ss_pred EEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCC
Confidence 99999987 58999999999999876 668899998754
No 55
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.75 E-value=2.3e-17 Score=149.54 Aligned_cols=113 Identities=26% Similarity=0.452 Sum_probs=89.9
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC---CceEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM---ASNII 85 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~---~~~L~ 85 (662)
.|+|+|++|++|+.. |++||||+|++++.+.+||+++++ .||+|||+|.|.+.+. ...|.
T Consensus 1 ~L~v~vi~a~~l~~~---------------~~~dpyv~v~~~~~~~~kT~~~~~--~~P~Wne~f~f~v~~~~~~~~~l~ 63 (117)
T cd08383 1 SLRLRILEAKNLPSK---------------GTRDPYCTVSLDQVEVARTKTVEK--LNPFWGEEFVFDDPPPDVTFFTLS 63 (117)
T ss_pred CeEEEEEEecCCCcC---------------CCCCceEEEEECCEEeEecceEEC--CCCcccceEEEecCCccccEEEEE
Confidence 389999999999861 579999999999877789999876 8999999999999763 35678
Q ss_pred EEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 86 FTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 86 ~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
|.++|.+..+ +..+|. +++..+..+...+.||+|.+.+++. +..|+|+|.++|
T Consensus 64 i~v~d~~~~~~~~~~g~--v~l~~~~~~~~~~~w~~L~~~~~~~-~~~G~l~l~~~~ 117 (117)
T cd08383 64 FYNKDKRSKDRDIVIGK--VALSKLDLGQGKDEWFPLTPVDPDS-EVQGSVRLRARY 117 (117)
T ss_pred EEEEecccCCCeeEEEE--EEecCcCCCCcceeEEECccCCCCC-CcCceEEEEEEC
Confidence 8888887664 355555 5555566688889999998655433 367999999987
No 56
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.74 E-value=1.2e-17 Score=153.19 Aligned_cols=116 Identities=21% Similarity=0.273 Sum_probs=93.1
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTVK 89 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V~ 89 (662)
|+|+|++|++|++. +..+++||||+|++++....||+++++ +.||+|||+|.|++.. .+.|.|+||
T Consensus 2 l~v~v~~A~~L~~~------------~~~~~~dpyv~v~~~~~~~~kT~v~~~-t~nP~Wne~f~~~~~~-~~~l~i~V~ 67 (123)
T cd08382 2 VRLTVLCADGLAKR------------DLFRLPDPFAVITVDGGQTHSTDVAKK-TLDPKWNEHFDLTVGP-SSIITIQVF 67 (123)
T ss_pred eEEEEEEecCCCcc------------CCCCCCCcEEEEEECCccceEccEEcC-CCCCcccceEEEEeCC-CCEEEEEEE
Confidence 89999999999874 345679999999997655679999998 9999999999999975 679999999
Q ss_pred ecCCCC---CceeEEEEeeeeeecCCc-eEEEEEeccCCCCC-CCCCCCceEEEE
Q 006070 90 DDNPIG---ATLIGRAYVPVEEVLGGE-EVDKWVEILDEDRN-PISSGSKIHVKL 139 (662)
Q Consensus 90 D~d~~~---~~~IG~~~ipl~~l~~g~-~~~~w~~L~~~~~k-~~k~~G~i~l~l 139 (662)
|++.++ +++||++.+++.++.... ....|++|...... .....|+|.+++
T Consensus 68 d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~ 122 (123)
T cd08382 68 DQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL 122 (123)
T ss_pred ECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence 999886 379999999999987543 34679999654321 112357777664
No 57
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.74 E-value=7e-18 Score=152.00 Aligned_cols=101 Identities=23% Similarity=0.367 Sum_probs=88.1
Q ss_pred CCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC-ceEEEEEEecCCCCCceeEEEEeeeeeecC-Cce
Q 006070 37 GKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNPIGATLIGRAYVPVEEVLG-GEE 114 (662)
Q Consensus 37 ~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~-~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~-g~~ 114 (662)
.+|++||||+|+++++...||+++++ +.||+|||+|.|.+++.. +.|.|.|+|++.+++++||++.++|+++.. +..
T Consensus 9 ~~G~~dPYv~v~v~~~~~~kT~v~~~-t~nP~Wne~f~f~v~~~~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~ 87 (111)
T cd04052 9 KTGLLSPYAELYLNGKLVYTTRVKKK-TNNPSWNASTEFLVTDRRKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV 87 (111)
T ss_pred cCCCCCceEEEEECCEEEEEEeeecc-CCCCccCCceEEEecCcCCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence 36789999999999877789999998 999999999999998754 679999999998888999999999999864 455
Q ss_pred EEEEEeccCCCCCCCCCCCceEEEEEeecc
Q 006070 115 VDKWVEILDEDRNPISSGSKIHVKLQYFDV 144 (662)
Q Consensus 115 ~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~ 144 (662)
.+.||+|.+ + ..|+|+++++|.|+
T Consensus 88 ~~~w~~L~~---~---~~G~i~~~~~~~p~ 111 (111)
T cd04052 88 GQQWFPLSG---N---GQGRIRISALWKPV 111 (111)
T ss_pred cceeEECCC---C---CCCEEEEEEEEecC
Confidence 689999964 2 46999999999985
No 58
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.74 E-value=4.1e-17 Score=150.10 Aligned_cols=113 Identities=23% Similarity=0.363 Sum_probs=94.6
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC--eeeeeeeeecCCCCCCeeeeEEEEeccCC-CceEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK--ARVGRTRMLKKEQSNPRWYESFHIYCAHM-ASNII 85 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-~~~L~ 85 (662)
.|.|+|++|++|++. +..+++||||+|.+.+ ....||+++++ +.||+|||+|.|++.+. ...|.
T Consensus 2 ~~~V~v~~a~~L~~~------------~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~-t~~P~Wne~f~f~i~~~~~~~L~ 68 (126)
T cd04043 2 LFTIRIVRAENLKAD------------SSNGLSDPYVTLVDTNGKRRIAKTRTIYD-TLNPRWDEEFELEVPAGEPLWIS 68 (126)
T ss_pred EEEEEEEEeECCCCC------------CCCCCCCceEEEEECCCCeeeecccEecC-CCCCcccceEEEEcCCCCCCEEE
Confidence 589999999999974 3457899999999864 34579999998 99999999999999764 47899
Q ss_pred EEEEecCCCC-CceeEEEEeeeeeecC---CceEEEEEeccCCCCCCCCCCCceEEEEEee
Q 006070 86 FTVKDDNPIG-ATLIGRAYVPVEEVLG---GEEVDKWVEILDEDRNPISSGSKIHVKLQYF 142 (662)
Q Consensus 86 ~~V~D~d~~~-~~~IG~~~ipl~~l~~---g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~ 142 (662)
|+|||++..+ +++||++.++|.++.. +...+.|++|. +.|+|++.+.+.
T Consensus 69 i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~--------~~g~i~l~~~~~ 121 (126)
T cd04043 69 ATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLD--------TQGRLLLRVSME 121 (126)
T ss_pred EEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcC--------CCCeEEEEEEEe
Confidence 9999999886 6899999999987643 45678999994 247888888874
No 59
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.74 E-value=2e-17 Score=152.70 Aligned_cols=114 Identities=22% Similarity=0.448 Sum_probs=93.9
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTV 88 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V 88 (662)
.|+|+|++|++|++. +..|++||||+|++++.. .||+++++ +.||+|||+|.|.+.+....|.|+|
T Consensus 2 ~L~V~vi~a~~L~~~------------d~~g~~DPyv~v~~~~~~-~kT~~v~~-t~~P~Wne~f~f~~~~~~~~l~i~v 67 (127)
T cd04027 2 KISITVVCAQGLIAK------------DKTGTSDPYVTVQVGKTK-KRTKTIPQ-NLNPVWNEKFHFECHNSSDRIKVRV 67 (127)
T ss_pred eEEEEEEECcCCcCC------------CCCCCcCcEEEEEECCEe-eecceecC-CCCCccceEEEEEecCCCCEEEEEE
Confidence 589999999999973 445779999999998754 69999998 9999999999999876667899999
Q ss_pred EecCCC------------CCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEE
Q 006070 89 KDDNPI------------GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKL 139 (662)
Q Consensus 89 ~D~d~~------------~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l 139 (662)
||+|.. ++++||.+.+++.++. +..+.|++|...+++. +..|+|.+++
T Consensus 68 ~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~-~~~G~i~~~~ 127 (127)
T cd04027 68 WDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKS-AVSGAIRLHI 127 (127)
T ss_pred EECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCC-cEeEEEEEEC
Confidence 999852 3699999999999875 3356899998655432 3578888764
No 60
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.74 E-value=8.1e-18 Score=151.54 Aligned_cols=99 Identities=23% Similarity=0.397 Sum_probs=83.7
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCC-CCCCcEEEEEECC--eeeeeeeeecCCCCCCeeeeEEEEeccCC----
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGK-GGSELYATIDLEK--ARVGRTRMLKKEQSNPRWYESFHIYCAHM---- 80 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~-g~~DPYv~v~l~~--~~~~kT~vi~~~t~nP~WNE~F~~~v~~~---- 80 (662)
|+|+|+|++|++|++. +.. |++||||+|++.+ ....||+++++ ++||+|||+|.|.+...
T Consensus 1 G~L~V~v~~a~~L~~~------------d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~-t~nP~Wne~f~f~~~~~~~~~ 67 (111)
T cd04041 1 GVLVVTIHRATDLPKA------------DFGTGSSDPYVTASFAKFGKPLYSTRIIRK-DLNPVWEETWFVLVTPDEVKA 67 (111)
T ss_pred CEEEEEEEEeeCCCcc------------cCCCCCCCccEEEEEccCCCccEeeeeECC-CCCCccceeEEEEeCchhccC
Confidence 7899999999999974 334 7899999999943 34569999999 99999999999987543
Q ss_pred CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 81 ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 81 ~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
...|.|+|||+|.++ +++||++.+++.++... ..|+++.
T Consensus 68 ~~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~~~---~~~~~~~ 107 (111)
T cd04041 68 GERLSCRLWDSDRFTADDRLGRVEIDLKELIED---RNWMGRR 107 (111)
T ss_pred CCEEEEEEEeCCCCCCCCcceEEEEEHHHHhcC---CCCCccc
Confidence 368999999999987 69999999999999833 5688874
No 61
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.73 E-value=2.7e-17 Score=148.77 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=94.4
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC-CceEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM-ASNIIFTV 88 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-~~~L~~~V 88 (662)
|+|+|++|++|++. +..+.+||||+|.+++....||+++.+ +.||+|||+|.|.+... .+.|.|+|
T Consensus 1 l~v~vi~a~~L~~~------------~~~~~~dpyv~v~~~~~~~~~T~v~~~-~~~P~Wne~f~~~~~~~~~~~l~~~v 67 (115)
T cd04040 1 LTVDVISAENLPSA------------DRNGKSDPFVKFYLNGEKVFKTKTIKK-TLNPVWNESFEVPVPSRVRAVLKVEV 67 (115)
T ss_pred CEEEEEeeeCCCCC------------CCCCCCCCeEEEEECCCcceeeceecC-CCCCcccccEEEEeccCCCCEEEEEE
Confidence 68999999999973 335678999999998766679999998 99999999999998764 47899999
Q ss_pred EecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceE
Q 006070 89 KDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIH 136 (662)
Q Consensus 89 ~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~ 136 (662)
||++..+ +++||++.+++.++..+...+.|++|....+. ..|.|.
T Consensus 68 ~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~---~~~~~~ 113 (115)
T cd04040 68 YDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGG---KLGAVF 113 (115)
T ss_pred EeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCc---cCceEE
Confidence 9999886 68999999999999998889999999754433 456654
No 62
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.73 E-value=1.4e-17 Score=153.95 Aligned_cols=102 Identities=17% Similarity=0.230 Sum_probs=85.6
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCC-CCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLG-KGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~-~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
.+.|.|+|++|+||++. +. .|.+||||+|++.. ....||+++++ +.||+|||+|.|+++..
T Consensus 14 ~~~L~V~V~~a~nL~~~------------d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~-t~nPvfNE~F~f~v~~~~ 80 (128)
T cd08392 14 TSCLEITIKACRNLAYG------------DEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKG-TVNPVFNETLKYVVEADL 80 (128)
T ss_pred CCEEEEEEEecCCCCcc------------CCCCCCCCeEEEEEEEeCCcccceeecccccC-CCCCccceEEEEEcCHHH
Confidence 47899999999999873 33 37899999999942 22459999999 99999999999998653
Q ss_pred --CceEEEEEEecCCCC-CceeEEEEeeeeeecC---CceEEEEEec
Q 006070 81 --ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG---GEEVDKWVEI 121 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~---g~~~~~w~~L 121 (662)
...|.|+|||.+.++ +++||++.|+|+++.- +.....||+|
T Consensus 81 l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l 127 (128)
T cd08392 81 LSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPL 127 (128)
T ss_pred hCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEEC
Confidence 358999999999886 6999999999999863 4577899998
No 63
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.73 E-value=4.3e-17 Score=154.58 Aligned_cols=119 Identities=24% Similarity=0.427 Sum_probs=95.3
Q ss_pred EEEEEEEeec--CCCCCCCCccccccCCCCCCCCCcEEEEEE----CCeeeeeeeeecCCCCCCeeeeEEEEeccCC---
Q 006070 10 LHVTIYEVDQ--LESGGGGNFFTKLLGGLGKGGSELYATIDL----EKARVGRTRMLKKEQSNPRWYESFHIYCAHM--- 80 (662)
Q Consensus 10 L~V~I~eA~~--L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l----~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--- 80 (662)
.+|+|..|++ |++ ++..+.+||||++++ .+....||+|+++ |+||+|||+|.|.+...
T Consensus 4 ~el~i~~~~~~~l~~------------~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~-TlnPvfNE~f~f~I~~~~~~ 70 (155)
T cd08690 4 IELTIVRCIGIPLPS------------GWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKD-TNSPEYNESFKLNINRKHRS 70 (155)
T ss_pred eEEEEEEeeccccCC------------CcCCCCCCeEEEEEEecCCCCCceeecCcccC-CCCCcccceEEEEeccccch
Confidence 4566666666 554 245678999999998 3444579999999 99999999999998654
Q ss_pred ------CceEEEEEEecCCC--CCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeecc
Q 006070 81 ------ASNIIFTVKDDNPI--GATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDV 144 (662)
Q Consensus 81 ------~~~L~~~V~D~d~~--~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~ 144 (662)
...|.|+|||++.+ +|++||++.|+|+.+..+...+.|++|++ ..|+ -+|+|+++++....
T Consensus 71 ~~R~l~~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~-~~k~--~Gg~l~v~ir~r~p 139 (155)
T cd08690 71 FQRVFKRHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMD-GRKA--TGGKLEVKVRLREP 139 (155)
T ss_pred hhhhccCCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhh-CCCC--cCCEEEEEEEecCC
Confidence 24699999999986 47999999999999988877888999984 3343 58999999998543
No 64
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.73 E-value=1.5e-17 Score=152.61 Aligned_cols=102 Identities=19% Similarity=0.298 Sum_probs=86.0
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CC---eeeeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EK---ARVGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~---~~~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
.+.|.|+|++|+||++. +..|.+||||+|+| ++ ....||+++++ +.||+|||+|.|+++..
T Consensus 13 ~~~L~V~V~~arnL~~~------------~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~-t~nPvfnE~F~f~v~~~~ 79 (124)
T cd08680 13 DSSLVISVEQLRNLSAL------------SIPENSKVYVRVALLPCSSSTSCLFRTKALED-QDKPVFNEVFRVPISSTK 79 (124)
T ss_pred CCEEEEEEeEecCCccc------------ccCCCCCeEEEEEEccCCCCCCceEEcCccCC-CCCCccccEEEEECCHHH
Confidence 47899999999999973 34678999999999 22 23569999999 99999999999998653
Q ss_pred --CceEEEEEEecCCCC-CceeEEEEeeeeeecC-CceEEEEEec
Q 006070 81 --ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG-GEEVDKWVEI 121 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~-g~~~~~w~~L 121 (662)
...|.|+|||.+.++ +++||.+.|+|.++.. ++....||+|
T Consensus 80 L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 80 LYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred hhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 368999999999887 6999999999999954 4567889986
No 65
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.73 E-value=6.3e-17 Score=150.97 Aligned_cols=118 Identities=17% Similarity=0.346 Sum_probs=95.3
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC--------
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM-------- 80 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-------- 80 (662)
.|+|+|++|++|++. +..|++||||+|.+++.+ .||+++++ |.||+|||+|.|++...
T Consensus 2 ~l~v~V~~a~~L~~~------------d~~g~~dpyv~v~~~~~~-~kT~v~~~-t~nP~Wne~~~f~~~~~~~~~~~~~ 67 (135)
T cd04017 2 QLRAYIYQARDLLAA------------DKSGLSDPFARVSFLNQS-QETEVIKE-TLSPTWDQTLIFDEVELYGSPEEIA 67 (135)
T ss_pred EEEEEEEEeecCcCC------------CCCCCCCCEEEEEECCee-eEeeeEcC-CCCCccCcEEEEeeeeccCChHHhh
Confidence 489999999999873 456789999999998765 59999998 99999999999975321
Q ss_pred --CceEEEEEEecCCCC-CceeEEEEe-eeeeecC---CceEEEEEeccCCCCCCCCCCCceEEEEEeecc
Q 006070 81 --ASNIIFTVKDDNPIG-ATLIGRAYV-PVEEVLG---GEEVDKWVEILDEDRNPISSGSKIHVKLQYFDV 144 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~-~~~IG~~~i-pl~~l~~---g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~ 144 (662)
...|.|+|||+|.++ +++||++.+ |+..+.. +.....|++|.. .++ ..|+|.|++.+.++
T Consensus 68 ~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~-~~~---~~Geil~~~~~~~~ 134 (135)
T cd04017 68 QNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYK-GGQ---SAGELLAAFELIEV 134 (135)
T ss_pred cCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeec-CCC---chhheeEEeEEEEe
Confidence 246899999999987 699999997 5555543 467789999963 332 57999999998764
No 66
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.72 E-value=5.8e-17 Score=149.80 Aligned_cols=103 Identities=26% Similarity=0.298 Sum_probs=85.0
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCC-CCCCcEEEEEEC--CeeeeeeeeecCCCCCCeeeeEEEEe-ccC---
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGK-GGSELYATIDLE--KARVGRTRMLKKEQSNPRWYESFHIY-CAH--- 79 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~-g~~DPYv~v~l~--~~~~~kT~vi~~~t~nP~WNE~F~~~-v~~--- 79 (662)
.+.|.|+|++|+||++. +.. |++||||+|.+. +.+..||+++++ +.||+|||+|.|. ++.
T Consensus 15 ~~~L~V~Vi~a~~L~~~------------~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~-t~nP~wnE~F~f~~~~~~~~ 81 (128)
T cd08388 15 KKALLVNIIECRDLPAM------------DEQSGTSDPYVKLQLLPEKEHKVKTRVLRK-TRNPVYDETFTFYGIPYNQL 81 (128)
T ss_pred CCEEEEEEEEeECCCCC------------CCCCCCcCCEEEEEEeCCcCceeeccEEcC-CCCCceeeEEEEcccCHHHh
Confidence 36899999999999974 333 789999999994 233469999999 9999999999994 432
Q ss_pred CCceEEEEEEecCCCC-CceeEEEEeeeeeecCC--ceEEEEEecc
Q 006070 80 MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGG--EEVDKWVEIL 122 (662)
Q Consensus 80 ~~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g--~~~~~w~~L~ 122 (662)
....|.|+|+|+|.++ +++||++.|||+++..+ ++...|++|.
T Consensus 82 ~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~ 127 (128)
T cd08388 82 QDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQ 127 (128)
T ss_pred CCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEecc
Confidence 1247999999999887 69999999999998644 7789999985
No 67
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.72 E-value=2.6e-17 Score=147.59 Aligned_cols=96 Identities=18% Similarity=0.217 Sum_probs=79.5
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC--CceEE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM--ASNII 85 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--~~~L~ 85 (662)
|.|.|+|++|++|++.+ .+. ...+++||||+|++++.+ .||+++++ +.||+|||+|.|++.+. ...|.
T Consensus 1 g~l~v~v~~A~~L~~~~---~~~-----~~~~~~DPYv~v~~~~~~-~kT~v~~~-t~nPvWne~f~f~v~~~~~~~~L~ 70 (108)
T cd04039 1 GVVFMEIKSITDLPPLK---NMT-----RTGFDMDPFVIISFGRRV-FRTSWRRH-TLNPVFNERLAFEVYPHEKNFDIQ 70 (108)
T ss_pred CEEEEEEEeeeCCCCcc---ccC-----CCCCccCceEEEEECCEe-EeeeeecC-CCCCcccceEEEEEeCccCCCEEE
Confidence 78999999999999742 111 122468999999998764 59999999 99999999999988543 24799
Q ss_pred EEEEecCCCC-CceeEEEEeeeeeecCCc
Q 006070 86 FTVKDDNPIG-ATLIGRAYVPVEEVLGGE 113 (662)
Q Consensus 86 ~~V~D~d~~~-~~~IG~~~ipl~~l~~g~ 113 (662)
|.|||+|.++ +++||++.++|++|..+.
T Consensus 71 ~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 71 FKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred EEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 9999999987 699999999999998664
No 68
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.72 E-value=3.1e-17 Score=151.00 Aligned_cols=102 Identities=17% Similarity=0.262 Sum_probs=87.4
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC---
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM--- 80 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--- 80 (662)
+.|.|+|++|+||++. +..+.+||||+|.+.. ....||+++++ +.||+|||+|.|.+...
T Consensus 16 ~~L~V~vi~a~~L~~~------------~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-~~nP~wne~f~f~i~~~~l~ 82 (127)
T cd04030 16 QKLIVTVHKCRNLPPC------------DSSDIPDPYVRLYLLPDKSKSTRRKTSVKKD-NLNPVFDETFEFPVSLEELK 82 (127)
T ss_pred CEEEEEEEEEECCCCc------------cCCCCCCceEEEEEEcCCCCCceEecccccC-CCCCEECeEEEEecCHHHhc
Confidence 7899999999999974 3457799999999943 33469999999 99999999999998542
Q ss_pred CceEEEEEEecCCC--C-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 81 ASNIIFTVKDDNPI--G-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 81 ~~~L~~~V~D~d~~--~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
...|.|+|+|.+.+ + +++||++.|+|.++..++..+.||+|.
T Consensus 83 ~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 83 RRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred CCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 36899999999875 3 699999999999998888889999983
No 69
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.72 E-value=1.9e-17 Score=156.83 Aligned_cols=113 Identities=19% Similarity=0.357 Sum_probs=86.7
Q ss_pred EEEEEEEEeecCCCCCCCCccc--cccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEecc--CCCceE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFT--KLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCA--HMASNI 84 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~--~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~--~~~~~L 84 (662)
+|.|+|++|++|++++...+++ +-.-++..+.+||||+|.+++++. ||+++++ +.||+|||+|.|++. +..+.|
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~-kT~v~~~-t~nPvWNE~f~f~v~~p~~~~~l 78 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKV-KTSVKKN-SYNPEWNEQIVFPEMFPPLCERI 78 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEee-ecceEcC-CCCCCcceEEEEEeeCCCcCCEE
Confidence 4899999999999864221100 000024567899999999998764 9999999 999999999999864 345789
Q ss_pred EEEEEecCCCC-CceeEEEEeeeeeecCCce-------EEEEEeccC
Q 006070 85 IFTVKDDNPIG-ATLIGRAYVPVEEVLGGEE-------VDKWVEILD 123 (662)
Q Consensus 85 ~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~-------~~~w~~L~~ 123 (662)
.|+|||+|..+ +++||++.|++.++...+. -..|+.|.+
T Consensus 79 ~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg 125 (151)
T cd04018 79 KIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYG 125 (151)
T ss_pred EEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeec
Confidence 99999999985 7999999999999876432 246777654
No 70
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=4.3e-17 Score=146.77 Aligned_cols=97 Identities=23% Similarity=0.315 Sum_probs=84.1
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC-----Cce
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM-----ASN 83 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-----~~~ 83 (662)
.|+|+|++|++|+. |++||||+|++++++ .||+++++ +.||+|||+|.|.+... ...
T Consensus 5 ~l~V~v~~a~~L~~----------------~~~dpyv~v~~~~~~-~kT~~~~~-t~nP~wne~f~f~~~~~~~~l~~~~ 66 (111)
T cd04011 5 QVRVRVIEARQLVG----------------GNIDPVVKVEVGGQK-KYTSVKKG-TNCPFYNEYFFFNFHESPDELFDKI 66 (111)
T ss_pred EEEEEEEEcccCCC----------------CCCCCEEEEEECCEe-eeeeEEec-cCCCccccEEEEecCCCHHHHhcCe
Confidence 58999999999983 458999999999876 58999998 99999999999987543 257
Q ss_pred EEEEEEecCCCC-CceeEEEEeeeeeecCC---ceEEEEEeccC
Q 006070 84 IIFTVKDDNPIG-ATLIGRAYVPVEEVLGG---EEVDKWVEILD 123 (662)
Q Consensus 84 L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g---~~~~~w~~L~~ 123 (662)
|.|+|+|++.++ +++||++.++|+++..+ .....|++|.+
T Consensus 67 l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 67 IKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred EEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 999999999887 69999999999999765 45789999965
No 71
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.72 E-value=3.6e-17 Score=150.09 Aligned_cols=102 Identities=21% Similarity=0.328 Sum_probs=83.8
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccC---
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAH--- 79 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~--- 79 (662)
.|.|.|+|++|++|+.. +..+.+||||+|++.+ ....||+++++ +.||+|||+|.|++.+
T Consensus 15 ~~~L~V~vi~a~~L~~~------------~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~~ 81 (125)
T cd04031 15 TSQLIVTVLQARDLPPR------------DDGSLRNPYVKVYLLPDRSEKSKRRTKTVKK-TLNPEWNQTFEYSNVRRET 81 (125)
T ss_pred CCEEEEEEEEecCCCCc------------CCCCCCCCEEEEEEccCCCccccccccccCC-CCCCccccEEEEcccCHHH
Confidence 37899999999999874 3457799999999964 23569999999 9999999999998644
Q ss_pred -CCceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 80 -MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 80 -~~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
....|.|+|||++.++ +++||++.++|++... .....||+|.
T Consensus 82 l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~~-~~~~~W~~L~ 125 (125)
T cd04031 82 LKERTLEVTVWDYDRDGENDFLGEVVIDLADALL-DDEPHWYPLQ 125 (125)
T ss_pred hCCCEEEEEEEeCCCCCCCcEeeEEEEecccccc-cCCcceEECc
Confidence 2468999999999887 6999999999998332 3346899983
No 72
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.72 E-value=3.3e-17 Score=150.38 Aligned_cols=103 Identities=19% Similarity=0.340 Sum_probs=89.8
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC----Cce
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM----ASN 83 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~----~~~ 83 (662)
|.|+|+|++|++|++. +..+++||||+|++++.. .||+++++++.||+|||+|.|.+.+. ...
T Consensus 1 g~L~V~V~~A~~L~~~------------~~~~~~dpyv~v~~~~~~-~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~ 67 (124)
T cd04049 1 GTLEVLLISAKGLQDT------------DFLGKIDPYVIIQCRTQE-RKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTK 67 (124)
T ss_pred CeEEEEEEecCCCCCC------------CCCCCcCceEEEEECCEe-eeeeEcCCCCCCCcccceEEEEecCcccCCCCE
Confidence 7899999999999974 334679999999998765 48998875589999999999999876 468
Q ss_pred EEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccC
Q 006070 84 IIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILD 123 (662)
Q Consensus 84 L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 123 (662)
|.|+|+|.+.++ +++||++.+++.++..++..+.|++|..
T Consensus 68 l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p 108 (124)
T cd04049 68 LILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVP 108 (124)
T ss_pred EEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeec
Confidence 999999999886 6999999999999998888899999964
No 73
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.72 E-value=3.8e-17 Score=149.51 Aligned_cols=102 Identities=21% Similarity=0.333 Sum_probs=87.1
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCC-CCCCCCcEEEEEECC--e--eeeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGL-GKGGSELYATIDLEK--A--RVGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~-~~g~~DPYv~v~l~~--~--~~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
.|.|.|+|++|+||++. + ..+.+||||+|++.. . ...||+++++ +.||+|||+|.|++...
T Consensus 13 ~~~L~V~v~~a~~L~~~------------~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~f~f~i~~~~ 79 (123)
T cd08521 13 TGSLEVHIKECRNLAYA------------DEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKN-TTNPVFNETLKYHISKSQ 79 (123)
T ss_pred CCEEEEEEEEecCCCCc------------CCCCCCCCcEEEEEEecCCCcCceeeccccCC-CCCCcccceEEEeCCHHH
Confidence 58999999999999974 2 356799999999832 1 3469999998 99999999999988642
Q ss_pred --CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEec
Q 006070 81 --ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 121 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L 121 (662)
...|.|+|+|++.++ +++||++.++|.++..+...+.||+|
T Consensus 80 l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 80 LETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred hCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 358999999999887 58999999999999888888999987
No 74
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.71 E-value=4.3e-17 Score=149.73 Aligned_cols=103 Identities=24% Similarity=0.334 Sum_probs=87.4
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCeeeeeeeeecCCCCCCeeeeEEEEeccCC----
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKARVGRTRMLKKEQSNPRWYESFHIYCAHM---- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~---- 80 (662)
.+.|.|+|++|+||+.. +..+++||||+|.+ ++....||+++++ +.||+|||+|.|++...
T Consensus 15 ~~~L~v~v~~a~~L~~~------------d~~~~~dpyv~v~~~~~~~~~~kT~v~~~-t~~P~Wne~f~f~~~~~~~l~ 81 (125)
T cd08386 15 ESTLTLKILKAVELPAK------------DFSGTSDPFVKIYLLPDKKHKLETKVKRK-NLNPHWNETFLFEGFPYEKLQ 81 (125)
T ss_pred CCEEEEEEEEecCCCCc------------cCCCCCCceEEEEECCCCCcceeeeeecC-CCCCccceeEEEcccCHHHhC
Confidence 46899999999999873 34567999999999 3334569999999 99999999999974221
Q ss_pred CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 81 ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 81 ~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
...|.|+|+|+|.++ +++||++.++++++..++..+.|++|.
T Consensus 82 ~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~ 124 (125)
T cd08386 82 QRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124 (125)
T ss_pred CCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecC
Confidence 257999999999887 699999999999999888999999985
No 75
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.70 E-value=1.3e-17 Score=155.71 Aligned_cols=111 Identities=24% Similarity=0.360 Sum_probs=90.2
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC--ee--eeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK--AR--VGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~~--~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
..|.|.|+|++|+||+.++. ...+.+||||+|++.. ++ ..||+++++ +.||+|||+|.|.+++.
T Consensus 13 ~~~~L~V~V~karnL~~~d~----------~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~-t~nPvfNE~f~F~v~~~~ 81 (138)
T cd08407 13 AANRLLVVVIKAKNLHSDQL----------KLLLGIDVSVKVTLKHQNAKLKKKQTKRAKH-KINPVWNEMIMFELPSEL 81 (138)
T ss_pred CCCeEEEEEEEecCCCcccc----------CCCCCCCeEEEEEEEcCCcccceeccceeeC-CCCCccccEEEEECCHHH
Confidence 35889999999999998421 1124489999999943 22 358999998 99999999999998753
Q ss_pred --CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCC
Q 006070 81 --ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 129 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~ 129 (662)
...|.|+|+|+|.++ +++||++.+++.. .|+..++|.+++...++++
T Consensus 82 L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~v 131 (138)
T cd08407 82 LAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQI 131 (138)
T ss_pred hCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCch
Confidence 357999999999988 6999999999974 6888899999987666653
No 76
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.70 E-value=1.7e-17 Score=154.76 Aligned_cols=107 Identities=18% Similarity=0.307 Sum_probs=88.5
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC--Cee--eeeeeeecCCCCCCeeeeEEEEeccCC--
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE--KAR--VGRTRMLKKEQSNPRWYESFHIYCAHM-- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~--~~kT~vi~~~t~nP~WNE~F~~~v~~~-- 80 (662)
.+.|.|+|++|+||+.. +..|.+||||+|+|. +.+ ..||+|+++ +.||+|||+|.|.++..
T Consensus 14 ~~~L~V~Vi~A~nL~~~------------~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~-t~nP~~nE~f~F~v~~~~l 80 (136)
T cd08406 14 AERLTVVVVKARNLVWD------------NGKTTADPFVKVYLLQDGRKISKKKTSVKRD-DTNPIFNEAMIFSVPAIVL 80 (136)
T ss_pred CCEEEEEEEEeeCCCCc------------cCCCCCCeEEEEEEEeCCccccccCCccccC-CCCCeeceeEEEECCHHHh
Confidence 47899999999999973 456789999999993 222 348999998 99999999999998652
Q ss_pred -CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCC
Q 006070 81 -ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 128 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~ 128 (662)
...|.|+|+|+|.++ +++||++.|+.. ..|+..++|.+++...+++
T Consensus 81 ~~~~l~~~V~~~d~~~~~~~iG~v~lg~~--~~g~~~~hW~~ml~~~~~~ 128 (136)
T cd08406 81 QDLSLRVTVAESTEDGKTPNVGHVIIGPA--ASGMGLSHWNQMLASLRKP 128 (136)
T ss_pred CCcEEEEEEEeCCCCCCCCeeEEEEECCC--CCChhHHHHHHHHHCCCCe
Confidence 367999999999877 699999999876 4677788999998765554
No 77
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.70 E-value=6.2e-17 Score=153.58 Aligned_cols=99 Identities=20% Similarity=0.372 Sum_probs=85.3
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCe----------------------------eeeee
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKA----------------------------RVGRT 57 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~----------------------------~~~kT 57 (662)
..+.|.|+|++|++|+++ +..|.+||||+|.+... .+.||
T Consensus 26 ~~~~L~V~vi~a~~L~~~------------d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT 93 (153)
T cd08676 26 PIFVLKVTVIEAKGLLAK------------DVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVT 93 (153)
T ss_pred CeEEEEEEEEeccCCccc------------CCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEec
Confidence 568999999999999974 45678999999999531 24689
Q ss_pred eeecCCCCCCeeeeEEEEeccCC-CceEEEEEEecCCCCCceeEEEEeeeeeecCCceEEEEEec
Q 006070 58 RMLKKEQSNPRWYESFHIYCAHM-ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEI 121 (662)
Q Consensus 58 ~vi~~~t~nP~WNE~F~~~v~~~-~~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L 121 (662)
+++++ ++||+|||+|.|++.+. .+.|.|+|||++ +++||++.++++++.. ..++.||+|
T Consensus 94 ~v~~~-tlnP~WnE~F~f~v~~~~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L 153 (153)
T cd08676 94 EVKPQ-TLNPVWNETFRFEVEDVSNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL 153 (153)
T ss_pred ceecC-CCCCccccEEEEEeccCCCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence 99999 99999999999999764 468999999998 8999999999999984 457999987
No 78
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.70 E-value=3.1e-17 Score=152.49 Aligned_cols=107 Identities=22% Similarity=0.302 Sum_probs=89.5
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC--
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM-- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-- 80 (662)
.|.|.|+|++|+||++. +..|.+||||+|.+.+ ....||+++++ +.||+|||+|.|++...
T Consensus 12 ~~~L~V~Vi~a~~L~~~------------d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~~~~~~l 78 (133)
T cd08384 12 RRGLIVGIIRCVNLAAM------------DANGYSDPFVKLYLKPDAGKKSKHKTQVKKK-TLNPEFNEEFFYDIKHSDL 78 (133)
T ss_pred CCEEEEEEEEEcCCCCc------------CCCCCCCcEEEEEEEcCCCccCCceeeeEec-cCCCCcccEEEEECCHHHh
Confidence 48999999999999974 3457799999999942 23469999998 99999999999998643
Q ss_pred -CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCC
Q 006070 81 -ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 128 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~ 128 (662)
...|.|+|+|+|..+ +++||++.+++.. .|+..++|++++...+++
T Consensus 79 ~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~ 126 (133)
T cd08384 79 AKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKK 126 (133)
T ss_pred CCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCC
Confidence 357999999999887 6999999999984 567788999998765554
No 79
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.69 E-value=1.7e-16 Score=145.18 Aligned_cols=103 Identities=16% Similarity=0.273 Sum_probs=88.1
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCC-CCCCCCcEEEEEEC--CeeeeeeeeecCCCCCCeeeeEEEEeccCC---
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGL-GKGGSELYATIDLE--KARVGRTRMLKKEQSNPRWYESFHIYCAHM--- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~-~~g~~DPYv~v~l~--~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--- 80 (662)
.+.|.|+|++|++|++. + ..+.+||||+|++. +....||+++++ +.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~a~~L~~~------------~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~-~~~P~wne~f~f~i~~~~l~ 79 (123)
T cd08390 13 EEQLTVSLIKARNLPPR------------TKDVAHCDPFVKVCLLPDERRSLQSKVKRK-TQNPNFDETFVFQVSFKELQ 79 (123)
T ss_pred CCEEEEEEEEecCCCCc------------cCCCCCCCcEEEEEEeeCCCCceEeeeEcC-CCCCccceEEEEEcCHHHhc
Confidence 47899999999999973 2 35679999999983 344569999999 99999999999987643
Q ss_pred CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 81 ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 81 ~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
...|.|.|+|.+..+ +++||++.++|+++......+.|++|.
T Consensus 80 ~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~ 122 (123)
T cd08390 80 RRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLE 122 (123)
T ss_pred ccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCC
Confidence 357999999999887 699999999999999888888999984
No 80
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.69 E-value=5.4e-17 Score=151.57 Aligned_cols=107 Identities=23% Similarity=0.331 Sum_probs=89.0
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC--Cee--eeeeeeecCCCCCCeeeeEEEEeccC---
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE--KAR--VGRTRMLKKEQSNPRWYESFHIYCAH--- 79 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~--~~kT~vi~~~t~nP~WNE~F~~~v~~--- 79 (662)
.+.|.|+|++|++|+.. +..|++||||+|.+. +++ ..||+|+++ +.||+|||+|.|.+..
T Consensus 14 ~~~L~V~vi~a~~L~~~------------d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~-t~nP~w~e~F~f~v~~~~~ 80 (136)
T cd08404 14 TNRLTVVVLKARHLPKM------------DVSGLADPYVKVNLYYGKKRISKKKTHVKKC-TLNPVFNESFVFDIPSEEL 80 (136)
T ss_pred CCeEEEEEEEeeCCCcc------------ccCCCCCeEEEEEEEcCCceeeeEcCccccC-CCCCccCceEEEECCHHHh
Confidence 57899999999999973 446789999999993 322 358999998 9999999999999864
Q ss_pred CCceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCC
Q 006070 80 MASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 128 (662)
Q Consensus 80 ~~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~ 128 (662)
....|.|+|+|+|.++ +++||++.+++.. .+....+|++|.+..|++
T Consensus 81 ~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~ 128 (136)
T cd08404 81 EDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQ 128 (136)
T ss_pred CCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCe
Confidence 2357899999999987 6999999999988 466788999998766664
No 81
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.68 E-value=2.1e-16 Score=145.32 Aligned_cols=101 Identities=20% Similarity=0.315 Sum_probs=85.1
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCeeeeeeeeecCCCCCCeeeeEEEEe-ccC---CC
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKARVGRTRMLKKEQSNPRWYESFHIY-CAH---MA 81 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~kT~vi~~~t~nP~WNE~F~~~-v~~---~~ 81 (662)
+.|.|+|++|+||++. +..|.+||||++.+ ++....||+++++ .||+|||+|.|+ +.. ..
T Consensus 16 ~~L~V~Vi~a~nL~~~------------~~~~~~d~yVk~~llp~~~~~~kTkv~~~--~nP~fnE~F~f~~i~~~~l~~ 81 (124)
T cd08389 16 RKLTVTVIRAQDIPTK------------DRGGASSWQVHLVLLPSKKQRAKTKVQRG--PNPVFNETFTFSRVEPEELNN 81 (124)
T ss_pred CEEEEEEEEecCCCch------------hcCCCCCcEEEEEEccCCcceeecccccC--CCCcccCEEEECCCCHHHhcc
Confidence 6899999999999974 34677899999888 3334468998753 899999999998 543 23
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
..|.|+|+|++.++ +++||++.|||+++..++....|++|.
T Consensus 82 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~ 123 (124)
T cd08389 82 MALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLE 123 (124)
T ss_pred CEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCC
Confidence 67999999999887 699999999999999888999999985
No 82
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.67 E-value=1e-16 Score=148.07 Aligned_cols=109 Identities=12% Similarity=0.335 Sum_probs=85.9
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC--Ce--eeeeeeeecCCCC-CCeeeeEEEEeccCCC
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE--KA--RVGRTRMLKKEQS-NPRWYESFHIYCAHMA 81 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~--~~~kT~vi~~~t~-nP~WNE~F~~~v~~~~ 81 (662)
.|.|.|+|++|+||+++ ...+.+||||+|+|- ++ +..||+++++ |. ||+|||+|.|+++...
T Consensus 13 ~~rLtV~VikarnL~~~------------~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~-t~~~P~fNEsF~Fdv~~~~ 79 (135)
T cd08692 13 NSRIQLQILEAQNLPSS------------STPLTLSFFVKVGMFSTGGLLYKKKTRLVKS-SNGQVKWGETMIFPVTQQE 79 (135)
T ss_pred CCeEEEEEEEccCCCcc------------cCCCCCCcEEEEEEEECCCcceeecCccEEC-CCCCceecceEEEeCCchh
Confidence 48899999999999974 124557999999992 22 3459999998 85 6999999999987543
Q ss_pred --ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCC
Q 006070 82 --SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 129 (662)
Q Consensus 82 --~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~ 129 (662)
..|.++|+|+|.++ +++||++.++.++. .+...++|.+++...++++
T Consensus 80 ~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~i 129 (135)
T cd08692 80 HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVV 129 (135)
T ss_pred heeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCee
Confidence 36788889998876 69999999999763 4556789999987656653
No 83
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.67 E-value=1.8e-16 Score=152.38 Aligned_cols=104 Identities=21% Similarity=0.292 Sum_probs=86.9
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC----CeeeeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE----KARVGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~----~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
..|.|.|+|++|+||++. +..|++||||+|++. +....||+++++ +.||+|||+|.|++...
T Consensus 25 ~~g~L~V~Vi~A~nL~~~------------d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~-t~nP~WnE~f~f~~~~~~ 91 (162)
T cd04020 25 STGELHVWVKEAKNLPAL------------KSGGTSDSFVKCYLLPDKSKKSKQKTPVVKK-SVNPVWNHTFVYDGVSPE 91 (162)
T ss_pred CCceEEEEEEeeeCCCCC------------CCCCCCCCEEEEEEEcCCCCCcceeCCccCC-CCCCCCCCEEEEecCCHH
Confidence 458999999999999974 346789999999983 234569999999 99999999999985322
Q ss_pred ---CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 81 ---ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 81 ---~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
...|.|+|||+|.++ +++||++.+++.++......+.|++|.
T Consensus 92 ~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 92 DLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred HhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 247999999999988 799999999999988666678888874
No 84
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.67 E-value=2.4e-16 Score=145.03 Aligned_cols=89 Identities=22% Similarity=0.257 Sum_probs=76.5
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccC--CCceE
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAH--MASNI 84 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~--~~~~L 84 (662)
.|.|+|+|++|++|+. +..+++||||+|+++++ ..||+++++ +.||+|||+|.|.... ..+.|
T Consensus 27 ~~~L~V~V~~A~~L~~-------------d~~g~~DPYVkV~~~~~-~~kT~vi~~-t~nPvWNE~F~f~~~~~~~~~~L 91 (127)
T cd04032 27 LATLTVTVLRATGLWG-------------DYFTSTDGYVKVFFGGQ-EKRTEVIWN-NNNPRWNATFDFGSVELSPGGKL 91 (127)
T ss_pred cEEEEEEEEECCCCCc-------------CcCCCCCeEEEEEECCc-cccCceecC-CCCCcCCCEEEEecccCCCCCEE
Confidence 4899999999999984 23467899999999877 569999999 9999999999997432 35799
Q ss_pred EEEEEecCCCC-CceeEEEEeeeeeec
Q 006070 85 IFTVKDDNPIG-ATLIGRAYVPVEEVL 110 (662)
Q Consensus 85 ~~~V~D~d~~~-~~~IG~~~ipl~~l~ 110 (662)
.|+|||+|.++ +++||++.++|....
T Consensus 92 ~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 92 RFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred EEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 99999999986 799999999998554
No 85
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.67 E-value=5.2e-17 Score=151.60 Aligned_cols=108 Identities=30% Similarity=0.442 Sum_probs=88.9
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC--Ce--eeeeeeeecCCCCCCeeeeEEEEeccCCC
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE--KA--RVGRTRMLKKEQSNPRWYESFHIYCAHMA 81 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~--~~~kT~vi~~~t~nP~WNE~F~~~v~~~~ 81 (662)
.+|.|.|+|++|++|++. +..|++||||+|++. ++ ...||+++++ +.||+|||+|.|++....
T Consensus 13 ~~~~l~V~Vi~a~~L~~~------------d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~ 79 (136)
T cd08402 13 TAGKLTVVILEAKNLKKM------------DVGGLSDPYVKIHLMQNGKRLKKKKTTIKKR-TLNPYYNESFSFEVPFEQ 79 (136)
T ss_pred CCCeEEEEEEEeeCCCcc------------cCCCCCCCeEEEEEEECCcccceeeccceeC-CCCCcccceEEEECCHHH
Confidence 458999999999999974 346789999999994 22 2458999988 999999999999986432
Q ss_pred ---ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCC
Q 006070 82 ---SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 128 (662)
Q Consensus 82 ---~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~ 128 (662)
..|.|+|+|+|.++ +++||++.|++.. .|...++|++|+...+++
T Consensus 80 l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~ 128 (136)
T cd08402 80 IQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRP 128 (136)
T ss_pred hCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCe
Confidence 47999999999987 5999999999975 477788999998765554
No 86
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.67 E-value=9.3e-17 Score=149.92 Aligned_cols=108 Identities=26% Similarity=0.448 Sum_probs=89.0
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCe--eeeeeeeecCCCCCCeeeeEEEEeccC--C
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKA--RVGRTRMLKKEQSNPRWYESFHIYCAH--M 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~--~~~kT~vi~~~t~nP~WNE~F~~~v~~--~ 80 (662)
.|+|.|+|++|+||++. +..|++||||+|.+ ++. ...||+++++ +.||+|||+|.|.+.. .
T Consensus 14 ~~~L~v~vi~a~~L~~~------------~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~-t~~P~wne~F~f~i~~~~~ 80 (136)
T cd08405 14 ANRITVNIIKARNLKAM------------DINGTSDPYVKVWLMYKDKRVEKKKTVIKKR-TLNPVFNESFIFNIPLERL 80 (136)
T ss_pred CCeEEEEEEEeeCCCcc------------ccCCCCCceEEEEEEeCCCccccccCcceeC-CCCCcccceEEEeCCHHHh
Confidence 48999999999999873 34577999999998 322 2358999998 9999999999998752 2
Q ss_pred -CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCC
Q 006070 81 -ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 129 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~ 129 (662)
...|.|+|+|.+.++ +++||++.+++.+. |...++|++|+...++++
T Consensus 81 ~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~ 129 (136)
T cd08405 81 RETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPV 129 (136)
T ss_pred CCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCch
Confidence 357999999999987 69999999999876 667789999987766653
No 87
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.67 E-value=9.3e-16 Score=141.10 Aligned_cols=119 Identities=23% Similarity=0.377 Sum_probs=96.1
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC-----eeeeeeeeecCCCCCCeeeeEEEEeccCCC-c
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK-----ARVGRTRMLKKEQSNPRWYESFHIYCAHMA-S 82 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~-----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~-~ 82 (662)
.|+|+|++|++|++.+. ...+.+||||+|++.+ ....||+++.+++.||+|||+|.|.+..+. +
T Consensus 3 ~l~v~vi~a~~L~~~~~----------~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~~~~ 72 (128)
T cd00275 3 TLTIKIISGQQLPKPKG----------DKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVPELA 72 (128)
T ss_pred EEEEEEEeeecCCCCCC----------CCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCCCeE
Confidence 58999999999997410 1246789999999942 234699998873459999999999986554 6
Q ss_pred eEEEEEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 83 NIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 83 ~L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
.|.|+|+|.+..++++||.+.++++++..| ..|++|.++.|++ ...|.|.+.+++
T Consensus 73 ~l~~~V~d~~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~-~~~~~l~v~~~~ 127 (128)
T cd00275 73 FLRFVVYDEDSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEP-LELSTLFVHIDI 127 (128)
T ss_pred EEEEEEEeCCCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCC-CcceeEEEEEEE
Confidence 799999999988779999999999999776 5789999887774 366899888876
No 88
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.67 E-value=8e-17 Score=149.99 Aligned_cols=108 Identities=26% Similarity=0.387 Sum_probs=88.7
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC--Ce--eeeeeeeecCCCCCCeeeeEEEEeccCCC
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE--KA--RVGRTRMLKKEQSNPRWYESFHIYCAHMA 81 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~--~~~kT~vi~~~t~nP~WNE~F~~~v~~~~ 81 (662)
.+|.|+|+|++|++|++. +..|.+||||+|++. ++ ...||+++++ +.||+|||+|.|.++...
T Consensus 12 ~~~~L~V~v~~A~~L~~~------------d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~-t~nP~wne~f~f~i~~~~ 78 (134)
T cd08403 12 TAGRLTLTIIKARNLKAM------------DITGFSDPYVKVSLMCEGRRLKKKKTSVKKN-TLNPTYNEALVFDVPPEN 78 (134)
T ss_pred CCCEEEEEEEEeeCCCcc------------ccCCCCCceEEEEEEeCCcccceecCCcccC-CCCCcccceEEEECCHHH
Confidence 468999999999999974 345779999999993 22 2458999888 999999999999885432
Q ss_pred ---ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCC
Q 006070 82 ---SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 128 (662)
Q Consensus 82 ---~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~ 128 (662)
..|.|+|+|+|.++ +++||++.|++. ..++..+.|++++...+++
T Consensus 79 ~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~ 127 (134)
T cd08403 79 VDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKP 127 (134)
T ss_pred hCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCe
Confidence 36999999999988 699999999987 4466678899998776665
No 89
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.67 E-value=3.8e-16 Score=146.03 Aligned_cols=101 Identities=20% Similarity=0.344 Sum_probs=86.9
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC---eeeeeeeeecCCCCCCeeeeEEEEeccCC------
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK---ARVGRTRMLKKEQSNPRWYESFHIYCAHM------ 80 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~---~~~~kT~vi~~~t~nP~WNE~F~~~v~~~------ 80 (662)
|.|+|++|++|+.+ ..|++||||+|+++. ....||+++++ +.||+|||+|.|++...
T Consensus 1 L~V~Vi~A~~L~~~-------------~~g~~dPyv~v~~~~~~~~~~~rT~vv~~-t~nP~Wne~f~f~~~~~~~~~~~ 66 (137)
T cd08675 1 LSVRVLECRDLALK-------------SNGTCDPFARVTLNYSSKTDTKRTKVKKK-TNNPRFDEAFYFELTIGFSYEKK 66 (137)
T ss_pred CEEEEEEccCCCcc-------------cCCCCCcEEEEEEecCCcCCeeccceeeC-CCCCCcceEEEEEcccccccccc
Confidence 68999999999862 246799999999983 34569999999 99999999999998654
Q ss_pred ----------CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCC
Q 006070 81 ----------ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE 124 (662)
Q Consensus 81 ----------~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 124 (662)
...|.|+|+|++.++ +++||++.+++.++..+...+.||+|...
T Consensus 67 ~~~~~~~~~~~~~l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~ 121 (137)
T cd08675 67 SFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR 121 (137)
T ss_pred ccccccccccccEEEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence 357999999999885 69999999999999877788999999754
No 90
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.66 E-value=8.2e-16 Score=138.36 Aligned_cols=104 Identities=15% Similarity=0.450 Sum_probs=78.3
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCCCceEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHMASNII 85 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~ 85 (662)
|.|+|.+|+||+. .+||||++.++. ...+||+++++ |+||+|||+|.|+++. ...|.
T Consensus 1 L~V~V~~A~~L~~-----------------~sDPYV~l~v~~~~~~~~~~KTk~i~~-TlnPvWnE~F~i~l~~-s~~L~ 61 (118)
T cd08686 1 LNVIVHSAQGFKQ-----------------SANLYCTLEVDSFGYFVKKAKTRVCRD-TTEPNWNEEFEIELEG-SQTLR 61 (118)
T ss_pred CEEEEEeCCCCCC-----------------CCCCEEEEEEcCccccceeeeeeeecC-CCCCccceEEEEEeCC-CCEEE
Confidence 6899999999974 389999999963 34689999999 9999999999999974 67999
Q ss_pred EEEEec-------CCCC-CceeEEEEeeee--eecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 86 FTVKDD-------NPIG-ATLIGRAYVPVE--EVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 86 ~~V~D~-------d~~~-~~~IG~~~ipl~--~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
|+|||+ |..+ +++||++.|.|. .+........-+.| .+-+|.++|+|
T Consensus 62 ~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~---------~~~~~~~s~~~ 118 (118)
T cd08686 62 ILCYEKCYSKVKLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISM---------NGITVNLSIKF 118 (118)
T ss_pred EEEEEcccccccccccCcccEEEEEEEEECHHHhccCCeeEEEEEe---------cCEEEEEEEeC
Confidence 999998 4555 699998888774 23332333333344 12366677765
No 91
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.66 E-value=4.4e-16 Score=146.80 Aligned_cols=94 Identities=21% Similarity=0.349 Sum_probs=82.7
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEE
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIF 86 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~ 86 (662)
.|.|.|+|++|++|+.. +. +++||||+|.+++++ .||+++++ +.||+|||+|.|.+.++...|.|
T Consensus 1 ~G~L~V~Vi~a~nL~~~------------d~-~~sDPYV~v~~g~~~-~kT~vvk~-t~nP~WnE~f~f~i~~~~~~l~~ 65 (145)
T cd04038 1 LGLLKVRVVRGTNLAVR------------DF-TSSDPYVVLTLGNQK-VKTRVIKK-NLNPVWNEELTLSVPNPMAPLKL 65 (145)
T ss_pred CeEEEEEEEeeECCCCC------------CC-CCcCcEEEEEECCEE-EEeeeEcC-CCCCeecccEEEEecCCCCEEEE
Confidence 38999999999999873 33 679999999998765 69999999 99999999999999888889999
Q ss_pred EEEecCCCC-CceeEEEEeeeeeecCCceE
Q 006070 87 TVKDDNPIG-ATLIGRAYVPVEEVLGGEEV 115 (662)
Q Consensus 87 ~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~ 115 (662)
+|||+|.++ +++||.+.+++.++......
T Consensus 66 ~V~D~d~~~~dd~iG~a~i~l~~l~~~~~~ 95 (145)
T cd04038 66 EVFDKDTFSKDDSMGEAEIDLEPLVEAAKL 95 (145)
T ss_pred EEEECCCCCCCCEEEEEEEEHHHhhhhhhh
Confidence 999999987 69999999999988765433
No 92
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.65 E-value=1.3e-15 Score=140.11 Aligned_cols=115 Identities=20% Similarity=0.335 Sum_probs=91.2
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTV 88 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V 88 (662)
.|.|+|++|+.++. +..+++||||+|++++....||+++++ +.||+|||+|.|.+.. .+.|.|+|
T Consensus 3 ~L~V~i~~a~l~~~-------------~~~~~~dPyv~v~~~~~~~~kT~v~~~-t~~P~Wne~f~~~~~~-~~~l~~~V 67 (125)
T cd04021 3 QLQITVESAKLKSN-------------SKSFKPDPYVEVTVDGQPPKKTEVSKK-TSNPKWNEHFTVLVTP-QSTLEFKV 67 (125)
T ss_pred eEEEEEEeeECCCC-------------CcCCCCCeEEEEEECCcccEEeeeeCC-CCCCccccEEEEEeCC-CCEEEEEE
Confidence 68999999984443 235679999999998775679999998 9999999999999863 47899999
Q ss_pred EecCCCC-CceeEEEEeeeeeecCC---ce--EEEEEeccCCCCC-CCCCCCceEEEE
Q 006070 89 KDDNPIG-ATLIGRAYVPVEEVLGG---EE--VDKWVEILDEDRN-PISSGSKIHVKL 139 (662)
Q Consensus 89 ~D~d~~~-~~~IG~~~ipl~~l~~g---~~--~~~w~~L~~~~~k-~~k~~G~i~l~l 139 (662)
||++..+ +++||++.++|.++..+ .. ...|++|..+. + ..+..|.|++.+
T Consensus 68 ~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~G~~~~~~ 124 (125)
T cd04021 68 WSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN-KGSSVKVGELTVIL 124 (125)
T ss_pred EeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC-CCcceeeeeEEEEe
Confidence 9999986 69999999999998853 22 34599997443 2 123578887764
No 93
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.64 E-value=2.2e-16 Score=146.42 Aligned_cols=107 Identities=28% Similarity=0.515 Sum_probs=90.6
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCe----eeeeeeeecCCCCCCeeeeEEEEeccCC--
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKA----RVGRTRMLKKEQSNPRWYESFHIYCAHM-- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~----~~~kT~vi~~~t~nP~WNE~F~~~v~~~-- 80 (662)
.|.|.|+|++|++|++. +..+.+||||+|.+.+. ...||+++++ +.||+|||+|.|.+...
T Consensus 13 ~~~L~V~v~~a~~L~~~------------~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~-~~~P~wne~f~f~i~~~~l 79 (134)
T cd00276 13 AERLTVVVLKARNLPPS------------DGKGLSDPYVKVSLLQGGKKLKKKKTSVKKG-TLNPVFNEAFSFDVPAEQL 79 (134)
T ss_pred CCEEEEEEEEeeCCCCc------------cCCCCCCcEEEEEEEcCCeEeeeecCcceec-CCCCeeeeeEEEECCHHHh
Confidence 37999999999999973 34567999999999542 2459999998 99999999999998754
Q ss_pred -CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCC
Q 006070 81 -ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 128 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~ 128 (662)
...|.|+|+|.+.++ +++||.+.+++.+ .+...+.|++|++..+++
T Consensus 80 ~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~ 127 (134)
T cd00276 80 EEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKP 127 (134)
T ss_pred CCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCc
Confidence 368999999999866 6999999999998 677889999999776664
No 94
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.64 E-value=9.6e-16 Score=142.03 Aligned_cols=106 Identities=24% Similarity=0.345 Sum_probs=89.4
Q ss_pred ceeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC
Q 006070 5 LLHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM 80 (662)
Q Consensus 5 ~~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~ 80 (662)
+..|.|.|+|++|++|+.. +..+.+||||+|.+.+ ...+||+++++ +.||.|||+|.|++...
T Consensus 10 ~~~~~l~v~i~~a~nL~~~------------~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~wne~f~~~~~~~ 76 (131)
T cd04026 10 VKDNKLTVEVREAKNLIPM------------DPNGLSDPYVKLKLIPDPKNETKQKTKTIKK-TLNPVWNETFTFDLKPA 76 (131)
T ss_pred ECCCEEEEEEEEeeCCCCc------------CCCCCCCCcEEEEEEcCCCCCceecceeecC-CCCCCccceEEEeCCch
Confidence 3458999999999999973 3456799999999963 34579999998 99999999999998653
Q ss_pred --CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCC
Q 006070 81 --ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDE 124 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~ 124 (662)
...|.|+|||.+.++ +++||++.++++++... ..+.||+|.+.
T Consensus 77 ~~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~ 122 (131)
T cd04026 77 DKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQ 122 (131)
T ss_pred hcCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCc
Confidence 368999999999876 69999999999999854 67899999764
No 95
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.63 E-value=3.1e-16 Score=146.74 Aligned_cols=108 Identities=17% Similarity=0.337 Sum_probs=89.1
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC--e--eeeeeeeecCCCCCCeeeeEEEEeccCC--
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK--A--RVGRTRMLKKEQSNPRWYESFHIYCAHM-- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~--~~~kT~vi~~~t~nP~WNE~F~~~v~~~-- 80 (662)
.+.|.|+|++|+||++. + .+.+||||+|.+.. . ...||+++++ +.||+|||+|.|.++..
T Consensus 14 ~~~L~V~V~~a~nL~~~------------~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~-~~nP~fnE~F~f~i~~~~l 79 (137)
T cd08409 14 LNRLTVVVLRARGLRQL------------D-HAHTSVYVKVSLMIHNKVVKTKKTEVVDG-AASPSFNESFSFKVTSRQL 79 (137)
T ss_pred CCeEEEEEEEecCCCcc------------c-CCCCCeEEEEEEEECCEEeeeeecccEeC-CCCCcccceEEEECCHHHh
Confidence 47899999999999873 3 45689999999842 2 2358999998 99999999999998632
Q ss_pred -CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCC
Q 006070 81 -ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 128 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~ 128 (662)
...|.|+|+|.+.++ +++||++.|+......|+..++|.+|+...+++
T Consensus 80 ~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~ 129 (137)
T cd08409 80 DTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKEL 129 (137)
T ss_pred CccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCc
Confidence 257999999999876 699999999987777888899999998654443
No 96
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.63 E-value=4.4e-15 Score=138.61 Aligned_cols=115 Identities=15% Similarity=0.245 Sum_probs=88.6
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC--e----------eeeeeeeecCCCCCCee-eeEEEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK--A----------RVGRTRMLKKEQSNPRW-YESFHI 75 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~--~----------~~~kT~vi~~~t~nP~W-NE~F~~ 75 (662)
...|++++|+||+. +..|++||||+|.+.. . ...||+++++ ++||+| ||+|.|
T Consensus 2 ~~~~~~~~A~~L~~-------------~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~-tlnP~W~nE~f~f 67 (137)
T cd08691 2 SFSLSGLQARNLKK-------------GMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVEN-TINPVWHREQFVF 67 (137)
T ss_pred EEEEEEEEeCCCCC-------------ccCCCCCceEEEEEECCCcccccccccccceeeeeeEcC-CCCCceEceEEEE
Confidence 36799999999983 2236799999999942 1 1469999999 999999 999999
Q ss_pred eccCCCceEEEEEEecCCCC----CceeEEEEeeeeeecCC---ceEEEEEeccCCCCCCCCCCCceEEEE
Q 006070 76 YCAHMASNIIFTVKDDNPIG----ATLIGRAYVPVEEVLGG---EEVDKWVEILDEDRNPISSGSKIHVKL 139 (662)
Q Consensus 76 ~v~~~~~~L~~~V~D~d~~~----~~~IG~~~ipl~~l~~g---~~~~~w~~L~~~~~k~~k~~G~i~l~l 139 (662)
.+. ..+.|.|+|+|++..+ +++||++.+|+.++..+ .....|++|....... .-.|+|.+.+
T Consensus 68 ~v~-~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s-~v~G~~~l~~ 136 (137)
T cd08691 68 VGL-PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTD-HVSGQLTFRF 136 (137)
T ss_pred EcC-CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCC-cEEEEEEEEe
Confidence 986 3468999999986543 69999999999999865 3467899996433222 2457776654
No 97
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.63 E-value=3.6e-16 Score=145.84 Aligned_cols=109 Identities=25% Similarity=0.400 Sum_probs=86.0
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC-Ce---eeeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE-KA---RVGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~-~~---~~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
..|.|+|+|++|++|+.. +..|++||||+|++. +. ...||+++++ |.||+|||+|.|.+...
T Consensus 12 ~~~~L~V~vi~a~~L~~~------------d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~-t~nP~wnE~F~f~i~~~~ 78 (135)
T cd08410 12 SAGRLNVDIIRAKQLLQT------------DMSQGSDPFVKIQLVHGLKLIKTKKTSCMRG-TIDPFYNESFSFKVPQEE 78 (135)
T ss_pred CCCeEEEEEEEecCCCcc------------cCCCCCCeEEEEEEEcCCcccceEcCccccC-CCCCccceeEEEeCCHHH
Confidence 348999999999999974 345689999999983 21 2358999998 99999999999998532
Q ss_pred -C-ceEEEEEEecCCCC-CceeEEEEeeeeeecCCc-eEEEEEeccCCCCCCC
Q 006070 81 -A-SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE-EVDKWVEILDEDRNPI 129 (662)
Q Consensus 81 -~-~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~-~~~~w~~L~~~~~k~~ 129 (662)
. ..|.|+|+|+|..+ +++||++.|... ..|. ..++|+.|++..++++
T Consensus 79 l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~--~~~~~~~~~W~~l~~~~~~~~ 129 (135)
T cd08410 79 LENVSLVFTVYGHNVKSSNDFIGRIVIGQY--SSGPSETNHWRRMLNSQRTAV 129 (135)
T ss_pred hCCCEEEEEEEeCCCCCCCcEEEEEEEcCc--cCCchHHHHHHHHHhCCCCEe
Confidence 2 36999999999877 699999987653 3333 5688999988766653
No 98
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=2e-15 Score=138.79 Aligned_cols=117 Identities=17% Similarity=0.198 Sum_probs=87.5
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeee-eeeeeecCCCCCCeeeeEEEEeccCC-CceEEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARV-GRTRMLKKEQSNPRWYESFHIYCAHM-ASNIIF 86 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~-~kT~vi~~~t~nP~WNE~F~~~v~~~-~~~L~~ 86 (662)
.|+|+|++|++|++. +..|++||||+|++++.+. .||+++++ +.||+|||+|.|++..+ .+.|.|
T Consensus 1 ~lrV~Vi~a~~L~~~------------d~~g~~DPYv~v~~~~~~~~~kT~~v~~-t~nP~Wne~f~f~~~~~~~~~L~~ 67 (124)
T cd04037 1 LVRVYVVRARNLQPK------------DPNGKSDPYLKIKLGKKKINDRDNYIPN-TLNPVFGKMFELEATLPGNSILKI 67 (124)
T ss_pred CEEEEEEECcCCCCC------------CCCCCCCcEEEEEECCeeccceeeEEEC-CCCCccceEEEEEecCCCCCEEEE
Confidence 379999999999974 4467899999999987653 58999998 99999999999987544 468999
Q ss_pred EEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 87 TVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 87 ~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
+|||+|.++ +++||++.+++.+..-+ .+|....-+...+ ..|.++..-.+.|
T Consensus 68 ~V~d~d~~~~dd~iG~~~i~l~~~~~~---~~~~~~~~~~~~~--~~~~~~~~~~~~~ 120 (124)
T cd04037 68 SVMDYDLLGSDDLIGETVIDLEDRFFS---KHRATCGLPPTYE--ESGPNQWRDSLKP 120 (124)
T ss_pred EEEECCCCCCCceeEEEEEeecccccc---hHHHhccCCCccc--ccCceecCcccCc
Confidence 999999986 69999999999876532 2333332111111 3466665555544
No 99
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.9e-15 Score=165.96 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=106.4
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC--CeeeeeeeeecCCCCCCeeeeEEEEeccCC---
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE--KARVGRTRMLKKEQSNPRWYESFHIYCAHM--- 80 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--- 80 (662)
.+..|.|+|++|++|+.+ +..|++||||++++- .....||++.++ |+||+|||+|.|.++..
T Consensus 165 ~~~~L~V~V~qa~~Lp~~------------d~~g~sdpyVK~~llPdk~~k~kT~v~r~-tlnP~fnEtf~f~v~~~~l~ 231 (421)
T KOG1028|consen 165 ELNLLTVRVIQAHDLPAK------------DRGGTSDPYVKVYLLPDKKGKFKTRVHRK-TLNPVFNETFRFEVPYEELS 231 (421)
T ss_pred cCCEEEEEEEEecCCCcc------------cCCCCCCCeeEEEEcCCCCCcceeeeeec-CcCCccccceEeecCHHHhc
Confidence 457899999999999984 446789999999994 333459999999 99999999999997653
Q ss_pred CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeecccc
Q 006070 81 ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDVTK 146 (662)
Q Consensus 81 ~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~ 146 (662)
...|.|+|+|.|+|+ +++||++.+||..+........|.+|........+..|+|.++++|.|...
T Consensus 232 ~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g 298 (421)
T KOG1028|consen 232 NRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAG 298 (421)
T ss_pred cCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCC
Confidence 378999999999998 699999999999888776688899998653333334489999999999843
No 100
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.62 E-value=1.6e-15 Score=141.15 Aligned_cols=91 Identities=26% Similarity=0.433 Sum_probs=78.2
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC------eeeeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK------ARVGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~------~~~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
+.|.|+|++|++|++. +..|++||||+|++.+ ....||+++++ |.||+|||+|.|++...
T Consensus 16 ~~L~V~Vi~A~~L~~~------------~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~-t~nP~wnE~f~f~i~~~~ 82 (133)
T cd04009 16 QSLRVEILNARNLLPL------------DSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKK-TLFPLFDESFEFNVPPEQ 82 (133)
T ss_pred CEEEEEEEEeeCCCCc------------CCCCCCCCEEEEEEECCCcCccccccccccCcC-CCCCccCCEEEEEechhh
Confidence 6899999999999973 3457799999999952 23569999999 99999999999998642
Q ss_pred ----CceEEEEEEecCCCC-CceeEEEEeeeeeecC
Q 006070 81 ----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG 111 (662)
Q Consensus 81 ----~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~ 111 (662)
...|.|+|||++.++ +++||++.++|+++..
T Consensus 83 ~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 83 CSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred cccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 358999999999988 7999999999999874
No 101
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.62 E-value=4.1e-16 Score=145.98 Aligned_cols=108 Identities=18% Similarity=0.322 Sum_probs=86.6
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC---Ce--eeeeeeeecCCCCCCeeeeEEEEeccCC-
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE---KA--RVGRTRMLKKEQSNPRWYESFHIYCAHM- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~---~~--~~~kT~vi~~~t~nP~WNE~F~~~v~~~- 80 (662)
.|.|.|+|++|+||++. +..|++||||+|.+. +. ...||+++++ +.||+|||+|.|+++..
T Consensus 14 ~~~L~V~VikarnL~~~------------~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~-t~nPvfnEtF~f~i~~~~ 80 (138)
T cd08408 14 TGRLSVEVIKGSNFKNL------------AMNKAPDTYVKLTLLNSDGQEISKSKTSIRRG-QPDPEFKETFVFQVALFQ 80 (138)
T ss_pred CCeEEEEEEEecCCCcc------------ccCCCCCeeEEEEEEeCCCcceeeccceeecC-CCCCcEeeeEEEECCHHH
Confidence 48999999999999973 346789999999993 22 2359999998 99999999999998643
Q ss_pred --CceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCC
Q 006070 81 --ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP 128 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~ 128 (662)
...|.|+|+|.+.++ +++||++.|++.... .+..++|+.++...+++
T Consensus 81 l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~ 130 (138)
T cd08408 81 LSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQ 130 (138)
T ss_pred hCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCE
Confidence 358999999999877 699999999987332 23467899998765554
No 102
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.61 E-value=1.2e-15 Score=188.26 Aligned_cols=119 Identities=19% Similarity=0.382 Sum_probs=102.3
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC--ce
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA--SN 83 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~--~~ 83 (662)
+-|.|.|+|++|+||.. ..|++||||+|.++++...||+|+++ +.||+|||+|+|.+.++. +.
T Consensus 1978 ~~G~L~V~V~~a~nl~~--------------~~~~sdPyv~l~~g~~~~~kTkvvk~-~~nP~Wne~f~~~~~~p~~~~~ 2042 (2102)
T PLN03200 1978 LPGSLTVTIKRGNNLKQ--------------SMGNTNAFCKLTLGNGPPRQTKVVSH-SSSPEWKEGFTWAFDSPPKGQK 2042 (2102)
T ss_pred CCcceEEEEeecccccc--------------ccCCCCCeEEEEECCCCcccccccCC-CCCCCcccceeeeecCCCCCCc
Confidence 46999999999999983 13679999999999764459999999 999999999998776654 67
Q ss_pred EEEEEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCc---eEEEEEeec
Q 006070 84 IIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSK---IHVKLQYFD 143 (662)
Q Consensus 84 L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~---i~l~l~f~~ 143 (662)
|.|+|||+|.++++.+|.+.|++.++..++....||+|.++ |+ +.|+ |++.++|++
T Consensus 2043 l~iev~d~d~f~kd~~G~~~i~l~~vv~~~~~~~~~~L~~~-~~---k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200 2043 LHISCKSKNTFGKSSLGKVTIQIDRVVMEGTYSGEYSLNPE-SN---KDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred eEEEEEecCccCCCCCceEEEEHHHHhcCceeeeeeecCcc-cc---cCCCcceEEEEEEecC
Confidence 99999999999989999999999999999999999999853 32 2456 999998864
No 103
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.61 E-value=4.7e-15 Score=135.88 Aligned_cols=101 Identities=22% Similarity=0.358 Sum_probs=83.6
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC---
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM--- 80 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--- 80 (662)
+.|.|+|++|++|++. +..+++||||+|.+.. ....||+++++ +.||+|||+|.|.....
T Consensus 15 ~~L~V~v~~a~~L~~~------------~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~-~~~P~Wne~f~f~~~~~~~~ 81 (123)
T cd04035 15 SALHCTIIRAKGLKAM------------DANGLSDPYVKLNLLPGASKATKLRTKTVHK-TRNPEFNETLTYYGITEEDI 81 (123)
T ss_pred CEEEEEEEEeeCCCCC------------CCCCCCCceEEEEEecCCCCCCceeeeeecC-CCCCCccceEEEcCCCHHHh
Confidence 6899999999999973 3356799999999832 23569999998 99999999999963221
Q ss_pred -CceEEEEEEecCCCCCceeEEEEeeeeeecCCceEEEEEec
Q 006070 81 -ASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEI 121 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L 121 (662)
...|.|+|||++.+++++||++.+++++|..++..+.|+.|
T Consensus 82 ~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~ 123 (123)
T cd04035 82 QRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123 (123)
T ss_pred CCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence 35899999999988779999999999999988877777654
No 104
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.61 E-value=2.9e-15 Score=136.72 Aligned_cols=98 Identities=15% Similarity=0.249 Sum_probs=82.0
Q ss_pred EEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCee------eeeeeeecCCCCCCeeeeEEEEecc-CCCceEE
Q 006070 13 TIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKAR------VGRTRMLKKEQSNPRWYESFHIYCA-HMASNII 85 (662)
Q Consensus 13 ~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~------~~kT~vi~~~t~nP~WNE~F~~~v~-~~~~~L~ 85 (662)
-.++|++|++. +..|++||||+|++.+.. ..||+++++ +.||+|||+|.|.+. +..+.|.
T Consensus 5 ~~i~a~~L~~~------------d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~-t~nP~wne~f~f~~~~~~~~~l~ 71 (120)
T cd04048 5 LSISCRNLLDK------------DVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKN-NLNPDFVTTFTVDYYFEEVQKLR 71 (120)
T ss_pred EEEEccCCCCC------------CCCCCCCcEEEEEEEcCCCCceEEeccEeEeCC-CCCCCceEEEEEEEEeEeeeEEE
Confidence 35899999973 345779999999996543 579999999 999999999999753 3346899
Q ss_pred EEEEecCC----CC-CceeEEEEeeeeeecCCceEEEEEeccC
Q 006070 86 FTVKDDNP----IG-ATLIGRAYVPVEEVLGGEEVDKWVEILD 123 (662)
Q Consensus 86 ~~V~D~d~----~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 123 (662)
|+|||+|. ++ +++||++.+++.+|..++....|++|.+
T Consensus 72 ~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 72 FEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred EEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 99999996 55 6999999999999998887888999943
No 105
>PRK05443 polyphosphate kinase; Provisional
Probab=99.58 E-value=1.1e-13 Score=159.07 Aligned_cols=229 Identities=16% Similarity=0.152 Sum_probs=166.1
Q ss_pred cchHHHHHHHHHcCCc-----EEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCcccccccc
Q 006070 202 HRCWEDIFDAITNARH-----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLK 276 (662)
Q Consensus 202 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~ 276 (662)
-+.|+.+.+.|++|.+ +|.++-|.++ .+..+.++|.+||++||+|+||+ +... .+
T Consensus 347 Y~SF~~~~~~i~~Aa~DP~V~~Ik~tlYr~~---------------~~s~iv~aL~~Aa~~Gk~V~vlv-e~ka--rf-- 406 (691)
T PRK05443 347 YESFDPVVEFLRQAAADPDVLAIKQTLYRTS---------------KDSPIVDALIEAAENGKQVTVLV-ELKA--RF-- 406 (691)
T ss_pred ccCchHHHHHHHHhccCCCeeEEEEEEEEec---------------CCHHHHHHHHHHHHcCCEEEEEE-ccCc--cc--
Confidence 3567889999999998 9999998763 24689999999999999999998 5432 11
Q ss_pred ccCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcC
Q 006070 277 KDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCD 356 (662)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~ 356 (662)
....+..+.+.|+++||+|+.-. + .+..|.|+++||++.. ++-+-.|++|+.|+..
T Consensus 407 ----de~~n~~~~~~L~~aGv~V~y~~--~--------------~~k~HaK~~lid~~e~----~~~~~~~~iGTgN~n~ 462 (691)
T PRK05443 407 ----DEEANIRWARRLEEAGVHVVYGV--V--------------GLKTHAKLALVVRREG----GGLRRYVHLGTGNYNP 462 (691)
T ss_pred ----cHHHHHHHHHHHHHcCCEEEEcc--C--------------CccceeEEEEEEeecC----CceeEEEEEcCCCCCc
Confidence 11123567789999999986421 1 3689999999999722 2233389999999877
Q ss_pred ccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeee-eCHHHHHHHHHHHHHHHhhcCCccccccccc
Q 006070 357 GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRL-EGPIAWDVLFNFEQRWRKQGGKDVLVHLREL 435 (662)
Q Consensus 357 ~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v-~Gpaa~dl~~~F~qrW~~~~~~~~l~~~~~~ 435 (662)
... ..|.|+++.+ .+..+.|+...|...|.......+
T Consensus 463 ~s~-----------------------------------~~y~D~~l~t~d~~i~~d~~~~F~~l~~~~~~~~~------- 500 (691)
T PRK05443 463 KTA-----------------------------------RLYTDLSLLTADPEIGEDVTRLFNYLTGYSRPVKL------- 500 (691)
T ss_pred chh-----------------------------------hhccceeEEEeChHHHHHHHHHHHHHhCcCccccc-------
Confidence 421 3578999985 556899999999988754211100
Q ss_pred CcccCCCCCCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhcccccCCCCcchhHHHHHHHHHHHhccc----eEEE
Q 006070 436 GDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKN----FIYI 511 (662)
Q Consensus 436 ~~~~~P~~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~----~IYI 511 (662)
. .++- +| ......+.+++...|.+|++ +|+|
T Consensus 501 ~--------------------~l~~------------------------sP-~~~~~~l~~~i~~ei~~Ak~G~~a~I~i 535 (691)
T PRK05443 501 R--------------------KLLV------------------------SP-FTLRERLLELIDREIANARAGKPARIIA 535 (691)
T ss_pred c--------------------EEee------------------------cC-ccHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 0100 11 12356799999999999999 9999
Q ss_pred eeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEe-------cCCCCCCCCchhHHHHHHHHH
Q 006070 512 ENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVV-------PMWPEGFPESGSVQAILDWQR 584 (662)
Q Consensus 512 EnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~-------P~~peG~~~~~~v~~il~~~~ 584 (662)
.++| +++. +|..+|..|.++| |+|.+++ |..| |.+|...|+
T Consensus 536 k~n~-l~d~---------------------~ii~aL~~As~~G--V~V~liVRGiC~l~pgip-g~sd~i~v~------- 583 (691)
T PRK05443 536 KMNS-LVDP---------------------QIIDALYEASQAG--VKIDLIVRGICCLRPGVP-GLSENIRVR------- 583 (691)
T ss_pred EcCC-CCCH---------------------HHHHHHHHHHHCC--CeEEEEEecccccCCCCC-CCCCCEEEH-------
Confidence 9999 4443 7999999999999 8888888 4333 445665552
Q ss_pred HHHHHHHHHHHHHHHHC
Q 006070 585 RTMDMMYKDVVQALRAK 601 (662)
Q Consensus 585 ~ti~~~~~si~~~L~~~ 601 (662)
||+++|+++
T Consensus 584 --------s~v~r~Leh 592 (691)
T PRK05443 584 --------SIVGRFLEH 592 (691)
T ss_pred --------HHHHHHHhc
Confidence 688888873
No 106
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=99.57 E-value=3e-14 Score=138.37 Aligned_cols=144 Identities=22% Similarity=0.332 Sum_probs=110.6
Q ss_pred chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCccC
Q 006070 203 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 282 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~ 282 (662)
..++.++++|.+|+++|+|+.|.|++.. .. ....|.+.|++++++||+|+||+ |.......
T Consensus 21 ~~~~~i~~~I~~A~~~I~i~~~~~~~~~-----~~-----~~~~l~~~L~~a~~rGv~V~il~-~~~~~~~~-------- 81 (176)
T cd00138 21 SDLDALLEAISNAKKSIYIASFYLSPLI-----TE-----YGPVILDALLAAARRGVKVRILV-DEWSNTDL-------- 81 (176)
T ss_pred hHHHHHHHHHHhhheEEEEEEeEecccc-----cc-----cchHHHHHHHHHHHCCCEEEEEE-cccccCCc--------
Confidence 5688999999999999999999886522 01 35689999999999999999998 44332211
Q ss_pred CChHHHHhhhcCC---CcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccc
Q 006070 283 THDEETEKFFQGT---DVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 359 (662)
Q Consensus 283 ~~~~~~~~~l~~~---~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~ 359 (662)
.........|... ++++...+... ....++|+|++|||++ ++++||.|+...++
T Consensus 82 ~~~~~~~~~l~~~~~~~i~~~~~~~~~------------~~~~~~H~K~~iiD~~-----------~~~vGS~N~~~~~~ 138 (176)
T cd00138 82 KISSAYLDSLRALLDIGVRVFLIRTDK------------TYGGVLHTKLVIVDDE-----------TAYIGSANLDGRSL 138 (176)
T ss_pred hHHHHHHHHHHHhhcCceEEEEEcCCc------------ccccceeeeEEEEcCC-----------EEEEECCcCChhhh
Confidence 0013455566654 78876543211 0247999999999999 99999999999765
Q ss_pred cCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCH--HHHHHHHHHHHHHHhh
Q 006070 360 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP--IAWDVLFNFEQRWRKQ 423 (662)
Q Consensus 360 dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gp--aa~dl~~~F~qrW~~~ 423 (662)
. .++|+.+.+.+| +|.++.+.|.+.|+..
T Consensus 139 ~-----------------------------------~~~e~~~~~~~~~~~~~~~~~~f~~~w~~~ 169 (176)
T cd00138 139 T-----------------------------------LNSEVGVVIYDPASLAADLKASLERDWNST 169 (176)
T ss_pred h-----------------------------------hhcceEEEEeChHHHHHHHHHHHHHHHhcC
Confidence 2 457999999999 7999999999999864
No 107
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=99.56 E-value=9.4e-14 Score=158.86 Aligned_cols=230 Identities=15% Similarity=0.161 Sum_probs=161.6
Q ss_pred cchHHHHHHHHHcCCc-----EEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCcccccccc
Q 006070 202 HRCWEDIFDAITNARH-----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLK 276 (662)
Q Consensus 202 ~~~~~~l~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~ 276 (662)
-+.|+.+.+.|++|.+ +|.|+-|.++ .+.++.++|.+||++|++|+||| +-.-. +.
T Consensus 338 Y~Sf~~v~~~i~~Aa~DP~V~~Ik~tlYr~~---------------~~s~ii~aL~~Aa~~Gk~V~v~v-eLkAr---fd 398 (672)
T TIGR03705 338 YESFDPVVEFLRQAAEDPDVLAIKQTLYRTS---------------KDSPIIDALIEAAENGKEVTVVV-ELKAR---FD 398 (672)
T ss_pred ccCHHHHHHHHHHHhcCCCceEEEEEEEEec---------------CCcHHHHHHHHHHHcCCEEEEEE-Eehhh---cc
Confidence 3567889999999998 9999998773 24689999999999999999998 51100 00
Q ss_pred ccCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcC
Q 006070 277 KDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCD 356 (662)
Q Consensus 277 ~~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~ 356 (662)
...+..+.+.|+++|++|+.-. ..+..|+|+++||.+..+ .-+-.+++|.-|...
T Consensus 399 -----e~~ni~wa~~le~aG~~viyg~----------------~~~k~H~K~~li~r~~~~----~~~~y~~igTgN~n~ 453 (672)
T TIGR03705 399 -----EEANIRWARRLEEAGVHVVYGV----------------VGLKTHAKLALVVRREGG----ELRRYVHLGTGNYHP 453 (672)
T ss_pred -----chhhHHHHHHHHHcCCEEEEcC----------------CCeeeeeEEEEEEEeeCC----ceEEEEEecCCCCCC
Confidence 0113467789999999987511 147999999999986111 111134444433332
Q ss_pred ccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeee-eeCHHHHHHHHHHHHHHHhhcCCccccccccc
Q 006070 357 GRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSR-LEGPIAWDVLFNFEQRWRKQGGKDVLVHLREL 435 (662)
Q Consensus 357 ~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~-v~Gpaa~dl~~~F~qrW~~~~~~~~l~~~~~~ 435 (662)
. + ...|+|+++. ..+..+.|+...|...|.......+
T Consensus 454 ~----------------------------------t-a~~y~D~~l~t~~~~i~~d~~~~F~~l~~~~~~~~~------- 491 (672)
T TIGR03705 454 K----------------------------------T-ARLYTDLSLFTADPEIGRDVARVFNYLTGYSRPPKF------- 491 (672)
T ss_pred c----------------------------------c-cccccceeEEEeChHHHHHHHHHHHHhhCCCcchhh-------
Confidence 2 1 1469999998 8889999999999987753211000
Q ss_pred CcccCCCCCCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhcccccCCCCcchhHHHHHHHHHHHhccc----eEEE
Q 006070 436 GDIIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKN----FIYI 511 (662)
Q Consensus 436 ~~~~~P~~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~----~IYI 511 (662)
+ .|..||. ..+..+.+.+.+.|.+|++ +|+|
T Consensus 492 ---------------------~-----------------------~l~~~P~-~~~~~~~~~i~~ei~~Ak~g~~~~I~i 526 (672)
T TIGR03705 492 ---------------------K-----------------------HLLVSPF-TLRKRLLELIDREIENARAGKPARIIA 526 (672)
T ss_pred ---------------------H-----------------------HHHhCcc-hHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 0 0112222 2456789999999999999 9999
Q ss_pred eeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEe-------cCCCCCCCCchhHHHHHHHHH
Q 006070 512 ENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVV-------PMWPEGFPESGSVQAILDWQR 584 (662)
Q Consensus 512 EnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~-------P~~peG~~~~~~v~~il~~~~ 584 (662)
.++|| ++. +|..+|..|.++| |+|.+++ |..| |.+|...|.
T Consensus 527 k~n~l-~D~---------------------~ii~aL~~As~aG--V~V~LivRGiCcL~pgip-g~sd~i~v~------- 574 (672)
T TIGR03705 527 KMNSL-VDP---------------------DLIDALYEASQAG--VKIDLIVRGICCLRPGVP-GLSENIRVR------- 574 (672)
T ss_pred EcCCC-CCH---------------------HHHHHHHHHHHCC--CeEEEEEecccccCCCCC-CCCCCEEEE-------
Confidence 99994 443 7999999999999 8888877 4333 445666552
Q ss_pred HHHHHHHHHHHHHHHHCCC
Q 006070 585 RTMDMMYKDVVQALRAKGI 603 (662)
Q Consensus 585 ~ti~~~~~si~~~L~~~gi 603 (662)
||++++++ |.
T Consensus 575 --------siv~r~Le-h~ 584 (672)
T TIGR03705 575 --------SIVGRFLE-HS 584 (672)
T ss_pred --------EEhhHhhC-cC
Confidence 68888887 54
No 108
>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=99.56 E-value=1.4e-15 Score=158.79 Aligned_cols=102 Identities=25% Similarity=0.350 Sum_probs=87.8
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC----CeeeeeeeeecCCCCCCeeeeEEEEeccCC--C
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE----KARVGRTRMLKKEQSNPRWYESFHIYCAHM--A 81 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~----~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--~ 81 (662)
..|.|+|.||+||-++ |.+|.|||||++++- +....||++++. ++||+|||+|+|.+... .
T Consensus 180 ~~l~v~i~ea~NLiPM------------DpNGlSDPYvk~kliPD~~~~sKqKTkTik~-~LNP~wNEtftf~Lkp~Dkd 246 (683)
T KOG0696|consen 180 DVLTVTIKEAKNLIPM------------DPNGLSDPYVKLKLIPDPKNESKQKTKTIKA-TLNPVWNETFTFKLKPSDKD 246 (683)
T ss_pred ceEEEEehhhcccccc------------CCCCCCCcceeEEeccCCcchhhhhhhhhhh-hcCccccceeEEeccccccc
Confidence 4699999999999985 678999999999992 233469999999 99999999999987533 3
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccC
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILD 123 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 123 (662)
..|.++|||+|.-+ +||+|..++.+++|. ...++.||.|++
T Consensus 247 rRlsiEvWDWDrTsRNDFMGslSFgisEl~-K~p~~GWyKlLs 288 (683)
T KOG0696|consen 247 RRLSIEVWDWDRTSRNDFMGSLSFGISELQ-KAPVDGWYKLLS 288 (683)
T ss_pred ceeEEEEecccccccccccceecccHHHHh-hcchhhHHHHhh
Confidence 68999999999988 699999999999987 346788999985
No 109
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=99.51 E-value=2.8e-14 Score=157.06 Aligned_cols=127 Identities=23% Similarity=0.323 Sum_probs=111.1
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEE
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIF 86 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~ 86 (662)
...|.|+|.||+||++. +..|.+||||+|.++++.+.||.++.+ ++.|.|.|.|+|.++.....|.|
T Consensus 4 ~~sl~vki~E~knL~~~------------~~~g~~D~yC~v~lD~E~v~RT~tv~k-sL~PF~gEe~~~~iP~~F~~l~f 70 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSY------------GPSGMRDCYCTVNLDQEEVCRTATVEK-SLCPFFGEEFYFEIPRTFRYLSF 70 (800)
T ss_pred ccceeEEEeecccCCCC------------CCCCCcCcceEEeecchhhhhhhhhhh-hcCCccccceEEecCcceeeEEE
Confidence 35799999999999984 456889999999999999999999999 99999999999999877789999
Q ss_pred EEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeeccccch
Q 006070 87 TVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDVTKDR 148 (662)
Q Consensus 87 ~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~~~ 148 (662)
-|||.| ++ |+.||++.|.-++|..-...+.||.|..-+... +.+|+|||++++++.....
T Consensus 71 Yv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~ds-EVQG~v~l~l~~~e~~~~~ 131 (800)
T KOG2059|consen 71 YVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDS-EVQGKVHLELALTEAIQSS 131 (800)
T ss_pred EEeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCCh-hhceeEEEEEEeccccCCC
Confidence 999999 55 899999999999999877889999997543322 4789999999998876543
No 110
>PRK12452 cardiolipin synthetase; Reviewed
Probab=99.50 E-value=2.8e-14 Score=160.63 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=110.9
Q ss_pred CcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccc
Q 006070 196 GKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLL 275 (662)
Q Consensus 196 g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~ 275 (662)
|+......+++.++++|.+||++|+|++..|-| +..+.++|+.||++||+|+||+ ++.+...+.
T Consensus 337 gp~~~~~~i~~~~l~~I~~A~~~I~I~tpYf~p---------------d~~l~~aL~~Aa~rGV~Vrii~-p~~~D~~~~ 400 (509)
T PRK12452 337 GPSSDDKSIRNTLLAVMGSAKKSIWIATPYFIP---------------DQETLTLLRLSAISGIDVRILY-PGKSDSIIS 400 (509)
T ss_pred CCCchhHHHHHHHHHHHHHhhhEEEEECCccCC---------------CHHHHHHHHHHHHcCCEEEEEc-CCCCChHHH
Confidence 443333467899999999999999999843322 2479999999999999999997 765432211
Q ss_pred cccCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCc
Q 006070 276 KKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLC 355 (662)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~ 355 (662)
. .....+.+.|.++||++..+.+ ...|+|++|||++ +|++|+.|+.
T Consensus 401 ~------~a~~~~~~~L~~aGv~I~~y~~-----------------~~lHaK~~ivD~~-----------~a~vGS~Nld 446 (509)
T PRK12452 401 D------QASQSYFTPLLKAGASIYSYKD-----------------GFMHAKIVLVDDK-----------IATIGTANMD 446 (509)
T ss_pred H------HHHHHHHHHHHHcCCEEEEecC-----------------CCeeeeEEEECCC-----------EEEEeCcccC
Confidence 0 0124556788889999977642 3689999999999 9999999997
Q ss_pred CccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHHHHHHHHHHHHHHHhh
Q 006070 356 DGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQ 423 (662)
Q Consensus 356 ~~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW~~~ 423 (662)
...+. ..|.+..+..+++.|.++...|.++|..+
T Consensus 447 ~RS~~----------------------------------~n~E~~~~i~~~~~~~~l~~~f~~d~~~s 480 (509)
T PRK12452 447 VRSFE----------------------------------LNYEIISVLYESETVHDIKRDFEDDFKHS 480 (509)
T ss_pred HhHhh----------------------------------hhhhccEEEECHHHHHHHHHHHHHHHHhC
Confidence 75431 24568889999999999999999999865
No 111
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=99.49 E-value=1.7e-13 Score=148.69 Aligned_cols=146 Identities=16% Similarity=0.213 Sum_probs=102.2
Q ss_pred hHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHh-hcCCeEEEEEecCccccccccccCccC
Q 006070 204 CWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKA-SEGVRVCMLVWDDRTSVSLLKKDGLMA 282 (662)
Q Consensus 204 ~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA-~~GV~VrvLlwd~~~s~~~~~~~~~~~ 282 (662)
.-+.++++|.+||++|+|+++.|.|.. +++.. ...+..|.++|.++| +|||+||||+ |..+.....
T Consensus 217 ~~~~ll~~I~~Ak~~I~I~t~yf~P~~---~~d~~--~~~~~~i~~AL~~AAa~RGV~VRILv-~~~~~~~~~------- 283 (369)
T PHA03003 217 DADVVLHKIKSAKKSIDLELLSLVPVI---REDDK--TTYWPDIYNALIRAAINRGVKVRLLV-GSWKKNDVY------- 283 (369)
T ss_pred CHHHHHHHHHHHhhEEEEEEeccccEE---eeCCC--CccHHHHHHHHHHHHHcCCCEEEEEE-ecCCcCCch-------
Confidence 358999999999999999998776532 22220 013468999999885 9999999997 875432111
Q ss_pred CChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCC
Q 006070 283 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 362 (662)
Q Consensus 283 ~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~ 362 (662)
.....+.|+++|+++.+..+. +.+.+|+|++|||++ +||+||.|+...++..
T Consensus 284 --~~~~~~~L~~~G~~~~i~vri--------------~~~~~H~K~~VVD~~-----------~a~iGS~N~d~~s~~~- 335 (369)
T PHA03003 284 --SMASVKSLQALCVGNDLSVKV--------------FRIPNNTKLLIVDDE-----------FAHITSANFDGTHYLH- 335 (369)
T ss_pred --hhhHHHHHHHcCCCCCceEee--------------ecCCCCceEEEEcCC-----------EEEEeccccCchhhcc-
Confidence 135667788888542110000 012389999999999 9999999997755531
Q ss_pred CCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHHHHHHHHHHHHHHHhh
Q 006070 363 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRKQ 423 (662)
Q Consensus 363 ~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW~~~ 423 (662)
..|.++. ..+|++|.+++..|.++|+..
T Consensus 336 --------------------------------~~e~~~~-~~~~~~a~~l~~~F~~dW~~~ 363 (369)
T PHA03003 336 --------------------------------HAFVSFN-TIDKELVKELSAIFERDWTSS 363 (369)
T ss_pred --------------------------------CCCeEEe-cCChhHHHHHHHHHHHHhCCc
Confidence 1233332 568999999999999999853
No 112
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.47 E-value=1.8e-13 Score=122.75 Aligned_cols=88 Identities=25% Similarity=0.324 Sum_probs=72.1
Q ss_pred EEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCe-----eeeeeeeecCCCCCCeeeeEEEEeccCC-----C
Q 006070 12 VTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKA-----RVGRTRMLKKEQSNPRWYESFHIYCAHM-----A 81 (662)
Q Consensus 12 V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~-----~~~kT~vi~~~t~nP~WNE~F~~~v~~~-----~ 81 (662)
+-.++|++|++. +..|++||||+|++.+. ...||+++++ ++||+|| +|.|++.+. .
T Consensus 4 ~~~i~a~~L~~~------------d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~-t~nP~Wn-~f~~~~~~l~~~~~~ 69 (110)
T cd04047 4 ELQFSGKKLDKK------------DFFGKSDPFLEISRQSEDGTWVLVYRTEVIKN-TLNPVWK-PFTIPLQKLCNGDYD 69 (110)
T ss_pred EEEEEeCCCCCC------------CCCCCCCeeEEEEEECCCCCEEEEEeeeEecc-CCCCceE-EEEEEHHHhcCCCcC
Confidence 345799999974 44567999999998543 3469999999 9999999 799886432 4
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCc
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE 113 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~ 113 (662)
..|.|+|||++.++ +++||++.+++++|..++
T Consensus 70 ~~l~~~V~d~d~~~~d~~iG~~~~~l~~l~~~~ 102 (110)
T cd04047 70 RPIKIEVYDYDSSGKHDLIGEFETTLDELLKSS 102 (110)
T ss_pred CEEEEEEEEeCCCCCCcEEEEEEEEHHHHhcCC
Confidence 68999999999987 699999999999998543
No 113
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.42 E-value=6.1e-13 Score=112.28 Aligned_cols=81 Identities=28% Similarity=0.435 Sum_probs=68.6
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCee--eeeeeeecCCCCCCeeeeEEEEeccC-CCceEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKAR--VGRTRMLKKEQSNPRWYESFHIYCAH-MASNIIF 86 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~--~~kT~vi~~~t~nP~WNE~F~~~v~~-~~~~L~~ 86 (662)
|+|+|++|+||+.. +..+..||||++.+++.. ..||+++++ +.||.|||+|.|++.. ....|.|
T Consensus 1 L~v~I~~a~~L~~~------------~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~~ 67 (85)
T PF00168_consen 1 LTVTIHSARNLPSK------------DSNGKPDPYVRVSVNGSESTKYKTKVKKN-TSNPVWNEEFEFPLDDPDLDSLSF 67 (85)
T ss_dssp EEEEEEEEESSSSS------------STTSSBEEEEEEEEETTTCEEEEECCBSS-BSSEEEEEEEEEEESHGCGTEEEE
T ss_pred CEEEEEEEECCCCc------------ccCCcccccceeecceeeeeeeeeeeeec-cccceeeeeeeeeeecccccceEE
Confidence 79999999999973 345678999999997632 369999999 9999999999999643 3456999
Q ss_pred EEEecCCCC-CceeEEEE
Q 006070 87 TVKDDNPIG-ATLIGRAY 103 (662)
Q Consensus 87 ~V~D~d~~~-~~~IG~~~ 103 (662)
+|||.+..+ +++||++.
T Consensus 68 ~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 68 EVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEETSSSSEEEEEEEE
T ss_pred EEEECCCCCCCCEEEEEC
Confidence 999999998 79999974
No 114
>PRK13912 nuclease NucT; Provisional
Probab=99.41 E-value=5e-12 Score=123.48 Aligned_cols=140 Identities=16% Similarity=0.213 Sum_probs=99.9
Q ss_pred chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCccC
Q 006070 203 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 282 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~ 282 (662)
++++.++++|++|+++|+|+.|.+. ...+.++|.++++|||+|+||+ |+.++...
T Consensus 33 ~~~~~l~~~I~~Ak~sI~i~~Y~~~----------------~~~i~~aL~~Aa~RGV~VrIll-d~~~~~~~-------- 87 (177)
T PRK13912 33 DALNKLVSLISNARSSIKIAIYSFT----------------HKDIAKALKSAAKRGVKISIIY-DYESNHNN-------- 87 (177)
T ss_pred HHHHHHHHHHHhcccEEEEEEEEEc----------------hHHHHHHHHHHHHCCCEEEEEE-eCccccCc--------
Confidence 4578999999999999999988763 2379999999999999999996 87654311
Q ss_pred CChHHHHhhhc-CCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccC
Q 006070 283 THDEETEKFFQ-GTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 361 (662)
Q Consensus 283 ~~~~~~~~~l~-~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt 361 (662)
+.....++. ..++++......... .......+|.|++|||++ ++++|+.|++...+..
T Consensus 88 --~~~~~~~l~~~~~~~~~~~~~~~~~--------~~~~~~~~H~K~~viD~~-----------~~~iGS~N~t~~s~~~ 146 (177)
T PRK13912 88 --DQSTIGYLDKYPNIKVCLLKGLKAK--------NGKYYGIMHQKVAIIDDK-----------IVVLGSANWSKNAFEN 146 (177)
T ss_pred --chhHHHHHHhCCCceEEEecCcccc--------CcccccccceeEEEEcCC-----------EEEEeCCCCChhHhcc
Confidence 112222333 246665544211110 011235689999999999 9999999999865531
Q ss_pred CCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCH-HHHHHHHHHHHHHHhh
Q 006070 362 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQ 423 (662)
Q Consensus 362 ~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~qrW~~~ 423 (662)
=+++.+.++.| .+.++.+.|.+.|...
T Consensus 147 -----------------------------------N~E~~lii~d~~~~~~~~~~F~~~~~~s 174 (177)
T PRK13912 147 -----------------------------------NYEVLLITDDTETILKAKEYFQKMLGSC 174 (177)
T ss_pred -----------------------------------CCceEEEECCHHHHHHHHHHHHHHHHhc
Confidence 03567778887 5799999999999864
No 115
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.3e-13 Score=146.26 Aligned_cols=119 Identities=23% Similarity=0.454 Sum_probs=95.0
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFT 87 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~ 87 (662)
..+.++|++|.+|.. +|..|++||||++++++.+ .||++|.. .+||+|||.|+|.|.+....|.+.
T Consensus 295 akitltvlcaqgl~a------------kdktg~sdpyvt~qv~ktk-rrtrti~~-~lnpvw~ekfhfechnstdrikvr 360 (1283)
T KOG1011|consen 295 AKITLTVLCAQGLIA------------KDKTGKSDPYVTAQVGKTK-RRTRTIHQ-ELNPVWNEKFHFECHNSTDRIKVR 360 (1283)
T ss_pred eeeEEeeeeccccee------------cccCCCCCCcEEEeecccc-hhhHhhhh-ccchhhhhheeeeecCCCceeEEE
Confidence 458999999999987 4778999999999999876 49999998 999999999999998888899999
Q ss_pred EEecCC------------CCCceeEEEEeeeeeecCCceEEEEEeccCCCCCC-CCCCCceEEEEEee
Q 006070 88 VKDDNP------------IGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNP-ISSGSKIHVKLQYF 142 (662)
Q Consensus 88 V~D~d~------------~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~-~k~~G~i~l~l~f~ 142 (662)
|||+|. -+|||+|+..|-+..|. .+.+.||.|..+..|. +.+.-+||+++...
T Consensus 361 vwded~dlksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdksavsgairlhisveik 426 (1283)
T KOG1011|consen 361 VWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHISVEIK 426 (1283)
T ss_pred EecCcccHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccchhhccceEEEEEEEEEc
Confidence 999862 24799999999988774 4567899996543332 22333445555443
No 116
>PLN02223 phosphoinositide phospholipase C
Probab=99.38 E-value=3.9e-12 Score=140.31 Aligned_cols=123 Identities=21% Similarity=0.294 Sum_probs=93.7
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCCC-
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHMA- 81 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~- 81 (662)
..+|.|+|+.|.+|+.. .. ++ .+.....||||+|.+.+ ....||+|..| +.||+|||+|.|++..+.
T Consensus 408 ~~~L~V~Visgq~~~~~-~~---k~---~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nN-g~nPvWne~F~F~i~~PEL 479 (537)
T PLN02223 408 VKILKVKIYMGDGWIVD-FK---KR---IGRLSKPDLYVRISIAGVPHDEKIMKTTVKNN-EWKPTWGEEFTFPLTYPDL 479 (537)
T ss_pred ceEEEEEEEEcccccCC-cc---cc---cCCCCCCCeEEEEEEeeccCCcceeEEEeCCC-CcCceecceeEEEEEccCc
Confidence 46799999999998631 10 00 01224579999999954 22347876665 999999999999886554
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
..|.|+|+|+|..+ +++||+..||++.|..| .++++|.+++|+++. ..+|.++..|
T Consensus 480 AlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~G---yR~VpL~~~~g~~l~-~~~Ll~~f~~ 536 (537)
T PLN02223 480 ALISFEVYDYEVSTADAFCGQTCLPVSELIEG---IRAVPLYDERGKACS-STMLLTRFKW 536 (537)
T ss_pred eEEEEEEEecCCCCCCcEEEEEecchHHhcCC---ceeEeccCCCcCCCC-CceEEEEEEe
Confidence 57999999999876 69999999999999999 688999999998763 3555555544
No 117
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.35 E-value=5e-12 Score=108.65 Aligned_cols=99 Identities=25% Similarity=0.480 Sum_probs=84.5
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccC-CCceEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAH-MASNIIFTV 88 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~-~~~~L~~~V 88 (662)
|.|.|++|++|... ......+|||++.+.+....||+++.+ +.||.|||.|.|++.. ....|.|+|
T Consensus 1 l~v~i~~~~~l~~~------------~~~~~~~~~v~v~~~~~~~~~T~~~~~-~~~P~w~~~~~~~~~~~~~~~l~i~v 67 (102)
T cd00030 1 LRVTVIEARNLPAK------------DLNGKSDPYVKVSLGGKQKFKTKVVKN-TLNPVWNETFEFPVLDPESDTLTVEV 67 (102)
T ss_pred CEEEEEeeeCCCCc------------CCCCCCCcEEEEEeccCceEecceeCC-CCCCcccceEEEEccCCCCCEEEEEE
Confidence 57999999999862 224568999999998745579999998 9999999999999986 567899999
Q ss_pred EecCCCC-CceeEEEEeeeeeec-CCceEEEEEec
Q 006070 89 KDDNPIG-ATLIGRAYVPVEEVL-GGEEVDKWVEI 121 (662)
Q Consensus 89 ~D~d~~~-~~~IG~~~ipl~~l~-~g~~~~~w~~L 121 (662)
+|.+..+ +++||.+.+++.++. .+.....|++|
T Consensus 68 ~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 68 WDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 9998877 699999999999998 66777788875
No 118
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.34 E-value=3e-12 Score=148.42 Aligned_cols=135 Identities=20% Similarity=0.359 Sum_probs=108.3
Q ss_pred ceeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceE
Q 006070 5 LLHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNI 84 (662)
Q Consensus 5 ~~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L 84 (662)
...|+|.|+|.+|++|+..+. -.+++.|||+++...+.-.+||+++++ ++||+|||+|++++....+.|
T Consensus 433 ~aIGVv~vkI~sa~~lk~~d~----------~i~~~vDpyit~~~~~r~~gkT~v~~n-t~nPvwNEt~Yi~lns~~d~L 501 (1227)
T COG5038 433 TAIGVVEVKIKSAEGLKKSDS----------TINGTVDPYITVTFSDRVIGKTRVKKN-TLNPVWNETFYILLNSFTDPL 501 (1227)
T ss_pred CeeEEEEEEEeeccCcccccc----------cccCCCCceEEEEeccccCCccceeec-cCCccccceEEEEecccCCce
Confidence 456999999999999997420 136789999999998877789999999 999999999999999888999
Q ss_pred EEEEEecCC-CCCceeEEEEeeeeeecCCceE-EEEEeccCCCCCCCCCCCceEEEEEeeccccchhhhhcc
Q 006070 85 IFTVKDDNP-IGATLIGRAYVPVEEVLGGEEV-DKWVEILDEDRNPISSGSKIHVKLQYFDVTKDRSWARGI 154 (662)
Q Consensus 85 ~~~V~D~d~-~~~~~IG~~~ipl~~l~~g~~~-~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~~~~W~~gI 154 (662)
.++|||.+. .+|+++|++.|+|..|.....+ +.-+.++ .+.+ ..|+|++.++|.|..++.--..+.
T Consensus 502 ~LslyD~n~~~sd~vvG~~~l~L~~L~~~~~~~ne~~e~~-~~~k---~vGrL~yDl~ffp~~e~k~~~~~s 569 (1227)
T COG5038 502 NLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFL-RNTK---NVGRLTYDLRFFPVIEDKKELKGS 569 (1227)
T ss_pred eEEEEeccccCCcceeeeEEechHHhhhccccccceeeee-ccCc---cceEEEEeeeeecccCCccccccc
Confidence 999999554 4589999999999988864433 3355654 3344 469999999999998766433333
No 119
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.31 E-value=1.1e-11 Score=107.20 Aligned_cols=94 Identities=27% Similarity=0.462 Sum_probs=79.6
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCe--eeeeeeeecCCCCCCeeeeEEEEeccCC-CceEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKA--RVGRTRMLKKEQSNPRWYESFHIYCAHM-ASNII 85 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~--~~~kT~vi~~~t~nP~WNE~F~~~v~~~-~~~L~ 85 (662)
+|.|+|++|++|... ...+..+|||++.+.+. ...||+++.+ +.||.|||+|.|++... .+.|.
T Consensus 1 ~l~i~i~~~~~l~~~------------~~~~~~~~yv~v~~~~~~~~~~~T~~~~~-~~~P~w~e~~~~~~~~~~~~~l~ 67 (101)
T smart00239 1 TLTVKIISARNLPKK------------DKKGKSDPYVKVSLDGDPKEKKKTKVVKN-TLNPVWNETFEFEVPPPELAELE 67 (101)
T ss_pred CeEEEEEEeeCCCCC------------CCCCCCCceEEEEEeCCccceEeeeEecC-CCCCcccceEEEEecCcccCEEE
Confidence 378999999999863 11245899999999875 4579999998 88999999999999877 68999
Q ss_pred EEEEecCCCC-CceeEEEEeeeeeecCCceE
Q 006070 86 FTVKDDNPIG-ATLIGRAYVPVEEVLGGEEV 115 (662)
Q Consensus 86 ~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~ 115 (662)
|+|+|.+..+ +.+||.+.+++.++..+...
T Consensus 68 i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 68 IEVYDKDRFGRDDFIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred EEEEecCCccCCceeEEEEEEHHHcccCccc
Confidence 9999998876 69999999999998876543
No 120
>PLN02952 phosphoinositide phospholipase C
Probab=99.30 E-value=1.8e-11 Score=137.75 Aligned_cols=122 Identities=16% Similarity=0.251 Sum_probs=92.6
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCCC-
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHMA- 81 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~- 81 (662)
..+|.|+|+.|.+|+.. ..+- ..+.....||||+|.+-+ ....||+++.+ +.||+|||+|.|++..+.
T Consensus 469 ~~~L~V~VisGq~l~lp-~~~~-----~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~n-N~nPvWnE~F~F~i~~PEL 541 (599)
T PLN02952 469 KKTLKVKVYLGDGWRLD-FSHT-----HFDSYSPPDFYTKMYIVGVPADNAKKKTKIIED-NWYPAWNEEFSFPLTVPEL 541 (599)
T ss_pred cceEEEEEEECcccCCC-Cccc-----cCCccCCCCceEEEEEeccCCCCcceeeeeccC-CCCcccCCeeEEEEEcCCc
Confidence 46899999999998631 0000 012223469999999954 23358999998 799999999998876543
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
..|.|+|+|+|..+ ++++|++.||++.|..| .+|++|.+.+|+++ + .++|.++|
T Consensus 542 Allrf~V~D~D~~~~ddfiGq~~lPv~~Lr~G---yR~VpL~~~~G~~l-~--~a~Llv~f 596 (599)
T PLN02952 542 ALLRIEVREYDMSEKDDFGGQTCLPVSELRPG---IRSVPLHDKKGEKL-K--NVRLLMRF 596 (599)
T ss_pred cEEEEEEEecCCCCCCCeEEEEEcchhHhcCC---ceeEeCcCCCCCCC-C--CEEEEEEE
Confidence 57999999999876 69999999999999999 57999999888875 2 34455544
No 121
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=99.27 E-value=1.6e-11 Score=137.95 Aligned_cols=123 Identities=23% Similarity=0.325 Sum_probs=100.5
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCe----eeeeeeeecCCCCCCeeeeEEEEeccCCC-ce
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKA----RVGRTRMLKKEQSNPRWYESFHIYCAHMA-SN 83 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~----~~~kT~vi~~~t~nP~WNE~F~~~v~~~~-~~ 83 (662)
+|.|+|+.++++.... ++ ...+..+||||.|.+.+. ...||+++++++-||.|+|+|+|++..+. ..
T Consensus 617 tL~IkI~sGq~~~~~~-----~~---~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPELAl 688 (746)
T KOG0169|consen 617 TLKIKIISGQGWLPDF-----GK---TKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPELAL 688 (746)
T ss_pred eeEEEEEecCcccCCC-----CC---CcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccceeE
Confidence 7999999999876521 10 122457899999999653 23599977777999999999999886665 68
Q ss_pred EEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 84 IIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 84 L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
|.|.|.|+|..+ |+|+|+..||+++|..| .+-+||.+..|+.+ ...+|.+.+.+.+
T Consensus 689 iRF~V~d~d~~~~ddF~GQ~tlP~~~L~~G---yRhVpL~~~~G~~~-~~asLfv~i~~~~ 745 (746)
T KOG0169|consen 689 IRFEVHDYDYIGKDDFIGQTTLPVSELRQG---YRHVPLLSREGEAL-SSASLFVRIAIVE 745 (746)
T ss_pred EEEEEEecCCCCcccccceeeccHHHhhCc---eeeeeecCCCCccc-cceeEEEEEEEec
Confidence 999999999998 89999999999999999 77889999888876 5578888887753
No 122
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=99.26 E-value=9.5e-12 Score=144.33 Aligned_cols=122 Identities=20% Similarity=0.301 Sum_probs=100.1
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC-CceEE
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM-ASNII 85 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-~~~L~ 85 (662)
.|.|+|.+..|.||++. +.+|.+||||++.++++++.||+++++ |+||+|||.|.+++... ...++
T Consensus 1039 sG~l~I~~~~~~nl~~~------------d~ng~sDpfv~~~ln~k~vyktkv~Kk-tlNPvwNEe~~i~v~~r~~D~~~ 1105 (1227)
T COG5038 1039 SGYLTIMLRSGENLPSS------------DENGYSDPFVKLFLNEKSVYKTKVVKK-TLNPVWNEEFTIEVLNRVKDVLT 1105 (1227)
T ss_pred cCcEEEEEeccCCCccc------------ccCCCCCceEEEEecceecccccchhc-cCCCCccccceEeeeccccceEE
Confidence 69999999999999983 678999999999999988889999999 99999999999999744 47899
Q ss_pred EEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 86 FTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 86 ~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
+.|+|+|.-. ++.||.+.++|+.|..+...+.-.+|-.+. -....|.++..-.|.+
T Consensus 1106 i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldgk~--~~~~~g~~~~~~~~r~ 1162 (1227)
T COG5038 1106 INVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT--FIVLDGTLHPGFNFRS 1162 (1227)
T ss_pred EEEeecccCCCccccccccccHhhcCcCCccceeeeccCcc--eEecccEeecceecch
Confidence 9999999877 599999999999999887776666663221 1234556555555533
No 123
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.24 E-value=5.1e-11 Score=134.01 Aligned_cols=124 Identities=14% Similarity=0.191 Sum_probs=95.1
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCCC-
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHMA- 81 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~- 81 (662)
..+|.|+|+.+.+++.. .... ..+.....||||+|.+-+ ....||++..| +.||+|||+|.|++.-+.
T Consensus 468 ~~~L~V~VisGq~~~l~-~~k~-----~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n-~~nP~Wneef~F~l~vPEL 540 (598)
T PLN02230 468 KKTLKVKVCMGDGWLLD-FKKT-----HFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYD-TWTPIWNKEFIFPLAVPEL 540 (598)
T ss_pred CcEEEEEEEEccCccCC-Cccc-----cCCCCCCCCceEEEEEEECCCCCcccceeccCC-CCCCccCCeeEEEEEcCce
Confidence 46899999999987531 0000 012223579999999943 22358998877 999999999999875554
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
..|.|.|+|+|..+ +++||+..||++.|..| .+.++|.+++|.++. ..+|.+++.|
T Consensus 541 AllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~G---yR~V~L~~~~G~~l~-~~~Ll~~f~~ 597 (598)
T PLN02230 541 ALLRVEVHEHDINEKDDFGGQTCLPVSEIRQG---IHAVPLFNRKGVKYS-STRLLMRFEF 597 (598)
T ss_pred eEEEEEEEECCCCCCCCEEEEEEcchHHhhCc---cceEeccCCCcCCCC-CCeeEEEEEe
Confidence 68999999999865 79999999999999999 778899999998763 3566666655
No 124
>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.22 E-value=9.5e-12 Score=136.84 Aligned_cols=108 Identities=31% Similarity=0.480 Sum_probs=87.2
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CC--eeeeeeeeecCCCCCCeeeeEEEEeccCC--
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EK--ARVGRTRMLKKEQSNPRWYESFHIYCAHM-- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~--~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-- 80 (662)
+|.|.|.|++|++|+.+ +..+.+||||++.+ ++ .+..||+++++ +.||+|||+|.|.++..
T Consensus 297 ~g~ltv~v~kar~L~~~------------~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~-~~npv~nesf~F~vp~~~l 363 (421)
T KOG1028|consen 297 AGRLTVVVIKARNLKSM------------DVGGLSDPYVKVTLLDGDKRLSKKKTSVKKK-TLNPVFNETFVFDVPPEQL 363 (421)
T ss_pred CCeEEEEEEEecCCCcc------------cCCCCCCccEEEEEecCCceeeeeeeecccC-CCCCcccccEEEeCCHHHh
Confidence 49999999999999974 45788999999999 23 23458999998 99999999999987632
Q ss_pred C-ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCC
Q 006070 81 A-SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPI 129 (662)
Q Consensus 81 ~-~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~ 129 (662)
. ..|.|+|||+|.++ +++||.+.+.... .|....+|.+++...++++
T Consensus 364 ~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 364 AEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred heeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 2 47999999999998 5899998887764 5556778888876555553
No 125
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.22 E-value=5.6e-11 Score=109.89 Aligned_cols=93 Identities=12% Similarity=0.158 Sum_probs=75.6
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCC--CCCcEEEEEECC--eeeeeeeeecCCCCC--CeeeeEEEEeccCC---
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKG--GSELYATIDLEK--ARVGRTRMLKKEQSN--PRWYESFHIYCAHM--- 80 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g--~~DPYv~v~l~~--~~~~kT~vi~~~t~n--P~WNE~F~~~v~~~--- 80 (662)
|+|.|.+|++++.... ...| .+||||++.|.+ ....+|.|..+ ++| |+||++|.|++...
T Consensus 2 LRViIw~~~~v~~~~~----------~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyr-slnG~~~FNwRfvF~~~~~~~~ 70 (133)
T cd08374 2 LRVIVWNTRDVLNDDT----------NITGEKMSDIYVKGWLDGLEEDKQKTDVHYR-SLDGEGNFNWRFVFPFDYLPAE 70 (133)
T ss_pred EEEEEEECcCCccccc----------ccCCccccCeEEEEEEccCcccccccceEEe-cCCCCcEEeEEEEEeeecCCcc
Confidence 8999999999775211 1133 499999999965 34569999999 999 99999999877541
Q ss_pred ---------------------CceEEEEEEecCCCC-CceeEEEEeeeeeecCCc
Q 006070 81 ---------------------ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGE 113 (662)
Q Consensus 81 ---------------------~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~ 113 (662)
...|.|+|||+|.++ +++||++.++|+.+..+.
T Consensus 71 ~~~~~~~~~~~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 71 KKIVVIKKEHFWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ceeEEEeeccccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 247899999999998 799999999999887664
No 126
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.20 E-value=1.2e-10 Score=130.89 Aligned_cols=124 Identities=18% Similarity=0.210 Sum_probs=95.3
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCCC-
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHMA- 81 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~- 81 (662)
..+|.|+|+.+.+++-. .+.. ..+.....||||+|.+.+ ....||+++.+ +.||+|||+|.|++..+.
T Consensus 451 ~~~L~V~Visgq~~~l~-~~~~-----~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~n-n~nP~W~e~f~F~i~~PeL 523 (581)
T PLN02222 451 KTTLRVTIYMGEGWYFD-FRHT-----HFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLED-NWIPAWDEVFEFPLTVPEL 523 (581)
T ss_pred cceEEEEEEEcccccCC-CCcc-----ccCCCCCCCeeEEEEEeccCCCcceeeeEecCC-CCCcccCCeeEEEEEcCce
Confidence 46899999999985420 0000 012234579999999953 23359999998 689999999999875544
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
..|.|+|+|+|..+ +++||+..||++.|..| .+.++|.+.+|.++. ...|.+++.|
T Consensus 524 AllRf~V~d~D~~~~ddfigq~~lPv~~Lr~G---yR~V~L~~~~g~~l~-~a~Lfv~~~~ 580 (581)
T PLN02222 524 ALLRLEVHEYDMSEKDDFGGQTCLPVWELSQG---IRAFPLHSRKGEKYK-SVKLLVKVEF 580 (581)
T ss_pred eEEEEEEEECCCCCCCcEEEEEEcchhhhhCc---cceEEccCCCcCCCC-CeeEEEEEEe
Confidence 68999999999866 79999999999999999 778999999998764 4577776665
No 127
>PRK01642 cls cardiolipin synthetase; Reviewed
Probab=99.20 E-value=4.4e-11 Score=134.54 Aligned_cols=143 Identities=21% Similarity=0.164 Sum_probs=104.3
Q ss_pred CcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccc
Q 006070 196 GKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLL 275 (662)
Q Consensus 196 g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~ 275 (662)
|+......+.+.+.++|.+||++|+|++- |++. ...+.++|+.+|++||+|+||+ +......+.
T Consensus 311 gP~~~~~~~~~~~~~~I~~A~~~I~I~tp------Yfip---------~~~i~~aL~~Aa~rGV~Vril~-p~~~d~~~~ 374 (483)
T PRK01642 311 GPGDPEETIHQFLLTAIYSARERLWITTP------YFVP---------DEDLLAALKTAALRGVDVRIII-PSKNDSLLV 374 (483)
T ss_pred CCCChhhHHHHHHHHHHHHhccEEEEEcC------CcCC---------CHHHHHHHHHHHHcCCEEEEEe-CCCCCcHHH
Confidence 44333334677899999999999999972 2231 2479999999999999999997 654322111
Q ss_pred cccCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCc
Q 006070 276 KKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLC 355 (662)
Q Consensus 276 ~~~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~ 355 (662)
. .....+.+.|.++||++..+.+ ...|.|++|||++ ++++|+.|+.
T Consensus 375 ~------~~~~~~~~~L~~~Gv~I~~y~~-----------------~~~HaK~~ivD~~-----------~~~vGS~N~d 420 (483)
T PRK01642 375 F------WASRAFFTELLEAGVKIYRYEG-----------------GLLHTKSVLVDDE-----------LALVGTVNLD 420 (483)
T ss_pred H------HHHHHHHHHHHHcCCEEEEeCC-----------------CceEeEEEEECCC-----------EEEeeCCcCC
Confidence 0 0123456677789999876531 2479999999999 9999999996
Q ss_pred CccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCH-HHHHHHHHHHHHHHhh
Q 006070 356 DGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQ 423 (662)
Q Consensus 356 ~~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~qrW~~~ 423 (662)
...+. -=+++.+.+.+| .+.++.+.|.++|..+
T Consensus 421 ~rS~~-----------------------------------~N~E~~~~i~d~~~~~~l~~~f~~d~~~s 454 (483)
T PRK01642 421 MRSFW-----------------------------------LNFEITLVIDDTGFAADLAAMQEDYFARS 454 (483)
T ss_pred HhHHh-----------------------------------hhhcceEEEECHHHHHHHHHHHHHHHHhC
Confidence 64331 013678888887 5899999999999764
No 128
>PLN02228 Phosphoinositide phospholipase C
Probab=99.18 E-value=1.8e-10 Score=129.04 Aligned_cols=126 Identities=17% Similarity=0.196 Sum_probs=97.6
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCee-eeEEEEeccCCC-
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRW-YESFHIYCAHMA- 81 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~W-NE~F~~~v~~~~- 81 (662)
.+|.|+|+.|++|+-....+- .+.....||||+|.+.+ ....||+++++ +.||+| ||+|.|++..+.
T Consensus 431 ~~L~I~ViSGq~l~lp~~~~~------~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n-~~nP~W~~e~f~F~~~~pEL 503 (567)
T PLN02228 431 TTLKVKIYTGEGWDLDFHLTH------FDQYSPPDFFVKIGIAGVPRDTVSYRTETAVD-QWFPIWGNDEFLFQLRVPEL 503 (567)
T ss_pred ceEEEEEEECCccCCCCCCCC------CCCCCCCCcEEEEEEEecCCCCCcceeeccCC-CCCceECCCeEEEEEEcCce
Confidence 479999999999842000000 11223479999999954 22349999988 799999 999999876554
Q ss_pred ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeecc
Q 006070 82 SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDV 144 (662)
Q Consensus 82 ~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~ 144 (662)
..|.|+|+|+|..+ +++||++.||++.|..| .+.++|.+.+|++. ..++|.+++.+.+.
T Consensus 504 A~lRf~V~D~d~~~~d~figq~~lPv~~Lr~G---YR~VpL~~~~G~~l-~~atLfv~~~~~~~ 563 (567)
T PLN02228 504 ALLWFKVQDYDNDTQNDFAGQTCLPLPELKSG---VRAVRLHDRAGKAY-KNTRLLVSFALDPP 563 (567)
T ss_pred eEEEEEEEeCCCCCCCCEEEEEEcchhHhhCC---eeEEEccCCCCCCC-CCeEEEEEEEEcCc
Confidence 68999999999765 69999999999999999 77899999999876 45788888888653
No 129
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=99.18 E-value=2e-10 Score=105.11 Aligned_cols=124 Identities=19% Similarity=0.354 Sum_probs=85.9
Q ss_pred HHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCcccc-ccccccCccCCChH
Q 006070 208 IFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSV-SLLKKDGLMATHDE 286 (662)
Q Consensus 208 l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~-~~~~~~~~~~~~~~ 286 (662)
+.++|++|+++|+|+.+.+. ...+.++|..++++||+|+|++ +..... .... .....
T Consensus 1 l~~~i~~A~~~i~i~~~~~~----------------~~~i~~~l~~~~~~gv~v~ii~-~~~~~~~~~~~-----~~~~~ 58 (126)
T PF13091_consen 1 LIDLIKSAQKSIWIASPYIT----------------DPDIIKALLDAAKRGVKVRIIV-DSNQDDSEAIN-----LASLK 58 (126)
T ss_dssp HHHHHHT-SSEEEEEESSS-----------------SCHHHHHHHHHHHTT-EEEEEE-ECGGGHHCCCS-----HHHHH
T ss_pred CHHHHhccCCEEEEEEEecC----------------cHHHHHHHHHHHHCCCeEEEEE-CCCccccchhh-----hHHHH
Confidence 57899999999999988762 2478999999999999999998 543211 1100 00012
Q ss_pred HHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCCCCcc
Q 006070 287 ETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSL 366 (662)
Q Consensus 287 ~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l 366 (662)
...+.++..|+++. .+.|.|++++|++ ++++|+.|++...+.
T Consensus 59 ~~~~~~~~~~i~v~---------------------~~~H~K~~i~d~~-----------~~iiGS~N~t~~~~~------ 100 (126)
T PF13091_consen 59 ELRELLKNAGIEVR---------------------NRLHAKFYIIDDK-----------VAIIGSANLTSSSFR------ 100 (126)
T ss_dssp HHHHHHHHTTHCEE---------------------S-B--EEEEETTT-----------EEEEES--CSCCCSC------
T ss_pred HHHhhhccceEEEe---------------------cCCCcceEEecCc-----------cEEEcCCCCCcchhc------
Confidence 33444466777654 3889999999998 999999999887652
Q ss_pred cccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHH-HHHHHHHHHHHH
Q 006070 367 FRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPI-AWDVLFNFEQRW 420 (662)
Q Consensus 367 ~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpa-a~dl~~~F~qrW 420 (662)
-.++..+.+++|. +.++.+.|.+.|
T Consensus 101 -----------------------------~n~E~~~~~~~~~~~~~~~~~F~~~W 126 (126)
T PF13091_consen 101 -----------------------------RNYELGVIIDDPELVKELIREFDQMW 126 (126)
T ss_dssp -----------------------------TSEEEEEEEECHHHHHHHHHHTHH-H
T ss_pred -----------------------------CCcceEEEEECHHHHHHHHHHHhccC
Confidence 2369999999996 999999999989
No 130
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.17 E-value=7.4e-11 Score=102.97 Aligned_cols=87 Identities=21% Similarity=0.297 Sum_probs=70.4
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTVK 89 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V~ 89 (662)
|.|+|..|++|.-..... ..+.+||||+|++++...+||++ +.||.|||+|.|++. .+..++|+||
T Consensus 1 L~I~V~~~RdvdH~~~~~---------~~~~~etyV~IKved~~kaRTr~----srnd~WnE~F~i~Vd-k~nEiel~Vy 66 (109)
T cd08689 1 LTITITSARDVDHIASPR---------FSKRPETYVSIKVEDVERARTKP----SRNDRWNEDFEIPVE-KNNEEEVIVY 66 (109)
T ss_pred CEEEEEEEecCccccchh---------hccCCCcEEEEEECCEEEEeccC----CCCCcccceEEEEec-CCcEEEEEEE
Confidence 689999999998743222 24568999999999987789998 567999999999994 6789999999
Q ss_pred ecCCCCCceeEEEEeeeeeec
Q 006070 90 DDNPIGATLIGRAYVPVEEVL 110 (662)
Q Consensus 90 D~d~~~~~~IG~~~ipl~~l~ 110 (662)
|...-..-.||-.-|++++|.
T Consensus 67 Dk~~~~~~Pi~llW~~~sdi~ 87 (109)
T cd08689 67 DKGGDQPVPVGLLWLRLSDIA 87 (109)
T ss_pred eCCCCeecceeeehhhHHHHH
Confidence 985533468888888888776
No 131
>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]
Probab=99.02 E-value=1.1e-09 Score=122.15 Aligned_cols=126 Identities=18% Similarity=0.278 Sum_probs=96.1
Q ss_pred ceeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeee-eEEEEeccC
Q 006070 5 LLHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWY-ESFHIYCAH 79 (662)
Q Consensus 5 ~~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WN-E~F~~~v~~ 79 (662)
+..=+|.|+|+.|+.|+. .+.|..-|+|+|.+-+ ..+.+|+++..+++||+|| |+|+|.+.+
T Consensus 1062 l~p~~lsv~vigaRHL~k-------------~gr~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~n 1128 (1267)
T KOG1264|consen 1062 LLPMTLSVKVLGARHLPK-------------LGRSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYN 1128 (1267)
T ss_pred ccceEEEEEEeecccccc-------------CCCCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeC
Confidence 344679999999999996 2356678999999944 2334555555559999999 999998876
Q ss_pred CC-ceEEEEEEecCCCCC-ceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeeccccc
Q 006070 80 MA-SNIIFTVKDDNPIGA-TLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDVTKD 147 (662)
Q Consensus 80 ~~-~~L~~~V~D~d~~~~-~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~~ 147 (662)
+. ..|.|.|+|.|.+++ .|||++..|+..+..| -+-+||.+.-.+.+ .-..|.|.++..|+.+.
T Consensus 1129 Pe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G---fRsVpLkN~ySEdl-ELaSLLv~i~m~~~~~~ 1194 (1267)
T KOG1264|consen 1129 PEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSG---FRSVPLKNGYSEDL-ELASLLVFIEMRPVLES 1194 (1267)
T ss_pred CceEEEEEEEecccccCCcceeeeeecchhhhhcc---ceeeecccCchhhh-hhhhheeeeEeccccCc
Confidence 65 789999999999996 8999999999999988 56678854333323 23567777777776543
No 132
>PHA02820 phospholipase-D-like protein; Provisional
Probab=99.01 E-value=2.1e-09 Score=118.64 Aligned_cols=152 Identities=13% Similarity=0.200 Sum_probs=101.4
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHH-HhhcCCeEEEEEecCccccccccccCccCC
Q 006070 205 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKK-KASEGVRVCMLVWDDRTSVSLLKKDGLMAT 283 (662)
Q Consensus 205 ~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~-kA~~GV~VrvLlwd~~~s~~~~~~~~~~~~ 283 (662)
-+.++.+|.+||++|+|+.--|-|.++...++. .....|.++|++ +++|||+||||+ -........ + .
T Consensus 220 ~~~~l~~I~~Ak~~I~I~tpyfvP~~~~~~~~~----~yw~~i~~AL~~AA~~RGV~VriLv-p~~~d~~~~-----~-~ 288 (424)
T PHA02820 220 LTALLSCIRNASKFVYVSVMNFIPIIYSKAGKI----LFWPYIEDELRRAAIDRKVSVKLLI-SCWQRSSFI-----M-R 288 (424)
T ss_pred HHHHHHHHHHHhhEEEEEEccccceeeccCCcc----cchHHHHHHHHHHHHhCCCEEEEEE-eccCCCCcc-----H-H
Confidence 479999999999999999876666544332222 145689999996 557999999998 221111110 0 0
Q ss_pred ChHHHHhhhcCCCcEE----EecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccc
Q 006070 284 HDEETEKFFQGTDVHC----ILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 359 (662)
Q Consensus 284 ~~~~~~~~l~~~~v~~----~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~ 359 (662)
.....++.|.++|+++ +.+|... ...+....+|.|++||| . .|++|..|+...++
T Consensus 289 a~~~~l~~L~~~gv~I~Vk~y~~p~~~---------~~~~~~~f~HaK~~vvD-~-----------~a~IGTsN~D~rsf 347 (424)
T PHA02820 289 NFLRSIAMLKSKNINIEVKLFIVPDAD---------PPIPYSRVNHAKYMVTD-K-----------TAYIGTSNWTGNYF 347 (424)
T ss_pred HHHHHHHHHhccCceEEEEEEEcCccc---------ccCCcceeeeeeEEEEc-c-----------cEEEECCcCCHHHH
Confidence 0123344556677775 2234211 12234568999999999 4 89999999988766
Q ss_pred cCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeC----HHHHHHHHHHHHHHHhh
Q 006070 360 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEG----PIAWDVLFNFEQRWRKQ 423 (662)
Q Consensus 360 dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~G----paa~dl~~~F~qrW~~~ 423 (662)
.. | ..+.+-+.. +.+.+|...|+++|+..
T Consensus 348 ~~------------------n-----------------~ev~~~i~~~~~~~~~~~l~~~F~~D~~s~ 380 (424)
T PHA02820 348 TD------------------T-----------------CGVSINITPDDGLGLRQQLEDIFIRDWNSK 380 (424)
T ss_pred hc------------------c-----------------CcEEEEEecCCcHHHHHHHHHHHHHhcCCC
Confidence 31 0 145666644 58999999999999853
No 133
>PRK11263 cardiolipin synthase 2; Provisional
Probab=99.00 E-value=2.3e-09 Score=117.80 Aligned_cols=135 Identities=16% Similarity=0.163 Sum_probs=100.2
Q ss_pred chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCccC
Q 006070 203 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLMA 282 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~~ 282 (662)
.+.+.+.++|.+||++|+|++= |++. +..|.++|+.+|+|||+|+||+ +..+..++..
T Consensus 206 ~i~~~~~~~i~~A~~~I~I~tp------Yf~p---------~~~l~~aL~~Aa~RGV~V~ii~-~~~~d~~~~~------ 263 (411)
T PRK11263 206 DIERHYLKALRQARREVIIANA------YFFP---------GYRLLRALRNAARRGVRVRLIL-QGEPDMPIVR------ 263 (411)
T ss_pred HHHHHHHHHHHHhceEEEEEec------CcCC---------CHHHHHHHHHHHHCCCEEEEEe-CCCCCcHHHH------
Confidence 3567899999999999999861 2321 3579999999999999999998 7654433211
Q ss_pred CChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCC
Q 006070 283 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 362 (662)
Q Consensus 283 ~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~ 362 (662)
.....+...|.++||++..+.. ...|.|++|||++ +++||+.|+....+.
T Consensus 264 ~a~~~~~~~Ll~~Gv~I~~y~~-----------------~~lHaK~~viD~~-----------~~~vGS~Nld~rS~~-- 313 (411)
T PRK11263 264 VGARLLYNYLLKGGVQIYEYCR-----------------RPLHGKVALMDDH-----------WATVGSSNLDPLSLS-- 313 (411)
T ss_pred HHHHHHHHHHHHCCCEEEEecC-----------------CCceeEEEEECCC-----------EEEEeCCcCCHHHhh--
Confidence 1123456788889999875431 3689999999999 999999999763221
Q ss_pred CCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHH-HHHHHHHHHHHHHh
Q 006070 363 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPI-AWDVLFNFEQRWRK 422 (662)
Q Consensus 363 ~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpa-a~dl~~~F~qrW~~ 422 (662)
+ + ..+.+.|.+|. +..+...|.+.+..
T Consensus 314 -------l------N--------------------~E~~~~i~d~~~a~~l~~~~~~~~~~ 341 (411)
T PRK11263 314 -------L------N--------------------LEANLIIRDRAFNQTLRDNLNGLIAA 341 (411)
T ss_pred -------h------h--------------------hhcCEEEeCHHHHHHHHHHHHHHHHh
Confidence 0 0 25567777874 78999999999863
No 134
>PF00614 PLDc: Phospholipase D Active site motif; InterPro: IPR001736 Phosphatidylcholine-hydrolysing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, and/or asparagine residues which may contribute to the active site aspartic acid. An Escherichia coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs [, , , ].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3HSI_C.
Probab=98.89 E-value=5.5e-10 Score=74.22 Aligned_cols=27 Identities=63% Similarity=1.053 Sum_probs=19.2
Q ss_pred ccCCccceEEEcCCCCCCCccccceeEEeccccCcCcc
Q 006070 321 MFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGR 358 (662)
Q Consensus 321 ~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r 358 (662)
.++||||++|||++ +||+||+|||++|
T Consensus 2 ~~~~H~K~~vvD~~-----------~a~vGg~nl~~~~ 28 (28)
T PF00614_consen 2 GGSHHQKFVVVDDR-----------VAFVGGANLCDGR 28 (28)
T ss_dssp TBEE---EEEETTT-----------EEEEE---SSHHH
T ss_pred CcceeeEEEEEcCC-----------EEEECceecCCCC
Confidence 48999999999999 9999999999875
No 135
>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]
Probab=98.86 E-value=5.7e-09 Score=112.71 Aligned_cols=119 Identities=18% Similarity=0.326 Sum_probs=96.7
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeE-EEEeccCC---Cc
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYES-FHIYCAHM---AS 82 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~-F~~~v~~~---~~ 82 (662)
.|.|.|+|.-|++||-++ ..+.+.|.||.|++++.. .||.|..+ ++||.||-. |.|.|.+. .+
T Consensus 2 pgkl~vki~a~r~lpvmd-----------kasd~tdafveik~~n~t-~ktdvf~k-slnp~wnsdwfkfevddadlqde 68 (1169)
T KOG1031|consen 2 PGKLGVKIKAARHLPVMD-----------KASDLTDAFVEIKFANTT-FKTDVFLK-SLNPQWNSDWFKFEVDDADLQDE 68 (1169)
T ss_pred CCcceeEEEeccCCcccc-----------cccccchheeEEEecccc-eehhhhhh-hcCCcccccceEEecChhhhccC
Confidence 588999999999999753 234578999999999876 49999999 999999965 88888653 36
Q ss_pred eEEEEEEecCCCC-CceeEEEEeeeeeecC----------CceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 83 NIIFTVKDDNPIG-ATLIGRAYVPVEEVLG----------GEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 83 ~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~----------g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
.|+|+|+|+|..+ +|-||++.|.+.-|.- |..+..|||+.+.--. -.|+|.+.++-
T Consensus 69 plqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihg---irgeinvivkv 135 (1169)
T KOG1031|consen 69 PLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHG---IRGEINVIVKV 135 (1169)
T ss_pred CeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceeccc---ccceeEEEEEE
Confidence 8999999999998 5999999999887751 4567899999874211 36888887764
No 136
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.80 E-value=2.7e-08 Score=105.72 Aligned_cols=169 Identities=18% Similarity=0.357 Sum_probs=111.4
Q ss_pred CCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEE--
Q 006070 188 VPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLV-- 265 (662)
Q Consensus 188 ~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLl-- 265 (662)
.|+-.+..|.. .-.++|++.|.+|+++|||+.....|......+ . .-+.|+++|+++|-|||+||+|+
T Consensus 265 SP~~~~~~grt----~DL~ail~~i~~A~~fv~isVMdY~Ps~~y~k~-~-----~fw~iDdaiR~aa~RgV~vR~lvs~ 334 (456)
T KOG3603|consen 265 SPPPLNPSGRT----WDLEAILNTIDEAQKFVYISVMDYFPSTIYSKN-H-----RFWEIDDAIRRAAVRGVKVRLLVSC 334 (456)
T ss_pred CCCCCCCCCCc----hhHHHHHHHHHHHhhheeeeehhccchheeecC-c-----chhhhhHHHHHHhhcceEEEEEEec
Confidence 34444444542 247899999999999999998888785544433 3 35699999999999999999998
Q ss_pred ecCcc--ccccccccCccCCChHHHHhhhcCCCcEEEec--CCCCCCCCCcccccccccccCCccceEEEcCCCCCCCcc
Q 006070 266 WDDRT--SVSLLKKDGLMATHDEETEKFFQGTDVHCILC--PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPE 341 (662)
Q Consensus 266 wd~~~--s~~~~~~~~~~~~~~~~~~~~l~~~~v~~~~~--~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~ 341 (662)
|+... ..+++++ -+.....+++..|+|.++ |+.-. ...+....+|.|.+|-+.
T Consensus 335 ~~~~~~~m~~~L~S-------Lq~l~~~~~~~~iqvk~f~VP~~~~--------~~ip~~Rv~HnKymVTe~-------- 391 (456)
T KOG3603|consen 335 WKHSEPSMFRFLRS-------LQDLSDPLENGSIQVKFFIVPQTNI--------EKIPFARVNHNKYMVTES-------- 391 (456)
T ss_pred cCCCCchHHHHHHH-------HHHhcCccccCceEEEEEEeCCCcc--------ccCchhhhccceeEEeec--------
Confidence 22211 1111110 012222334556766655 43211 245677899999999988
Q ss_pred ccceeEEeccccCcCccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHHHHHHHHHHHHHHH
Q 006070 342 RRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWR 421 (662)
Q Consensus 342 ~~~~vafvGG~nl~~~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW~ 421 (662)
.||+|--|.+.+||-.. .|..+--.. .| -.|+++.+|...|+.+|+
T Consensus 392 ----aayIGTSNws~dYf~~T---------------------aG~~ivv~q--~~-------~~~~~~~ql~~vFeRdW~ 437 (456)
T KOG3603|consen 392 ----AAYIGTSNWSGDYFTST---------------------AGTAIVVRQ--TP-------HKGTLVSQLKAVFERDWN 437 (456)
T ss_pred ----ceeeeccCCCccceecc---------------------CceEEEEec--CC-------CCCcHHHHHHHHHhhccc
Confidence 89999999999988420 010000000 01 357899999999999998
Q ss_pred hh
Q 006070 422 KQ 423 (662)
Q Consensus 422 ~~ 423 (662)
..
T Consensus 438 S~ 439 (456)
T KOG3603|consen 438 ST 439 (456)
T ss_pred cc
Confidence 54
No 137
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.72 E-value=4.1e-09 Score=116.63 Aligned_cols=91 Identities=22% Similarity=0.333 Sum_probs=77.5
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCee------eeeeeeecCCCCCCeeeeEEEEeccCC
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKAR------VGRTRMLKKEQSNPRWYESFHIYCAHM 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~------~~kT~vi~~~t~nP~WNE~F~~~v~~~ 80 (662)
+.+|-|.|+-|+++-+- |.+|.|||||+|.+.... ..||+|+++ |+||+++|+|+|.|+..
T Consensus 946 ~q~L~veVlhA~diipL------------D~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~r-tLnPVfDE~FeFsVp~e 1012 (1103)
T KOG1328|consen 946 AQTLVVEVLHAKDIIPL------------DSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSR-TLNPVFDETFEFSVPPE 1012 (1103)
T ss_pred ccchhhhhhcccccccc------------CCCCCCCCeEEEEeccccccccchhhhhhhhhc-cccchhhhheeeecCcc
Confidence 45677888999998772 678999999999997643 359999999 99999999999988643
Q ss_pred -----CceEEEEEEecCCCC-CceeEEEEeeeeeec
Q 006070 81 -----ASNIIFTVKDDNPIG-ATLIGRAYVPVEEVL 110 (662)
Q Consensus 81 -----~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~ 110 (662)
...|.|+|||.|.++ +||-|++.+.|.++.
T Consensus 1013 ~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1013 PCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred ccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 357999999999998 699999999998875
No 138
>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]
Probab=98.66 E-value=4.8e-09 Score=116.05 Aligned_cols=122 Identities=18% Similarity=0.361 Sum_probs=92.2
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----ee--------------------------eeeeee
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----AR--------------------------VGRTRM 59 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~--------------------------~~kT~v 59 (662)
|.|.+.+|+||-+ ++.+|-|||||.+.+-. .+ +.-|+|
T Consensus 116 l~is~~~ak~l~a------------kd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsv 183 (1103)
T KOG1328|consen 116 LNISLLEAKDLIA------------KDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSV 183 (1103)
T ss_pred HHHHHHHhcCccc------------cCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhccc
Confidence 4566677777776 36678899999887721 00 124778
Q ss_pred ecCCCCCCeeeeEEEEeccCCC-ceEEEEEEecCC----------------------------------C---CCceeEE
Q 006070 60 LKKEQSNPRWYESFHIYCAHMA-SNIIFTVKDDNP----------------------------------I---GATLIGR 101 (662)
Q Consensus 60 i~~~t~nP~WNE~F~~~v~~~~-~~L~~~V~D~d~----------------------------------~---~~~~IG~ 101 (662)
+++ |+||+|||.|.|.+.+-. ..+.+.+||.|- . .|||+|.
T Consensus 184 k~~-TLnPkW~EkF~F~IeDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGc 262 (1103)
T KOG1328|consen 184 KKK-TLNPKWSEKFQFTIEDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGC 262 (1103)
T ss_pred ccc-cCCcchhhheeeehhccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccc
Confidence 887 999999999999998754 678999998751 0 1689999
Q ss_pred EEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeecccc
Q 006070 102 AYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDVTK 146 (662)
Q Consensus 102 ~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~ 146 (662)
+.|||.++.+ ..+++||.|..++.+. +..|.+++.+...-.++
T Consensus 263 iNipl~EiP~-~Gld~WFkLepRS~~S-~VqG~~~LklwLsT~e~ 305 (1103)
T KOG1328|consen 263 INIPLAEIPP-DGLDQWFKLEPRSDKS-KVQGQVKLKLWLSTKEE 305 (1103)
T ss_pred cccchhcCCc-chHHHHhccCcccccc-cccceEEEEEEEeeecc
Confidence 9999999974 2478999998776554 47899999998865544
No 139
>KOG3603 consensus Predicted phospholipase D [General function prediction only]
Probab=98.56 E-value=1.1e-05 Score=86.33 Aligned_cols=253 Identities=17% Similarity=0.190 Sum_probs=146.6
Q ss_pred hHHHHHHHHHcCCcEEEEEEEeeec---eeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCc
Q 006070 204 CWEDIFDAITNARHMIYITGWSVYT---EISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGL 280 (662)
Q Consensus 204 ~~~~l~~aI~~Ak~~I~I~~w~~~p---~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~ 280 (662)
..++-+..|++|+++++|..|-++- ++++. +.. ...|..+..+|..++.+||.||+.. ....... .
T Consensus 73 T~eaW~~Ll~sA~~eldIas~ywsL~~~d~~~~-dsS---t~~G~~vy~~L~~~~~~gIsiriA~-~~p~~~~-~----- 141 (456)
T KOG3603|consen 73 TKEAWLELLSTAQEELDIASFYWSLTGKDTGVV-DSS---TQYGEQVYNTLLALAKSGVKIRIAQ-SYPSGGP-P----- 141 (456)
T ss_pred HHHHHHHHhhccceEEEEEEEeeccccceeccC-CCc---chHHHHHHHHHHHhccCCeEEEEEe-ecCCCCC-C-----
Confidence 4688999999999999998654431 11111 110 1147889999999999999999986 3332111 1
Q ss_pred cCCChHHHHhhhcCCC-cEEEec--CCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCc
Q 006070 281 MATHDEETEKFFQGTD-VHCILC--PRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDG 357 (662)
Q Consensus 281 ~~~~~~~~~~~l~~~~-v~~~~~--~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~ 357 (662)
+.-...|+..| +++.-. ++.+ ...-.|-|..|||++ -=|+||.|+...
T Consensus 142 -----~~d~~~Le~~Gaa~vr~id~~~l~-------------g~GvlHtKf~vvD~k-----------hfylGSaNfDWr 192 (456)
T KOG3603|consen 142 -----NADLQVLESLGLAQVRSIDMNRLT-------------GGGVLHTKFWVVDIK-----------HFYLGSANFDWR 192 (456)
T ss_pred -----cccHHHHHhCCCceEEeecccccc-------------cCceEEEEEEEEecc-----------eEEEeccccchh
Confidence 12234566666 555432 1111 135679999999998 889999999763
Q ss_pred cccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeC--HHHHHHHHHHHHHHHhhcCCccccccc--
Q 006070 358 RYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEG--PIAWDVLFNFEQRWRKQGGKDVLVHLR-- 433 (662)
Q Consensus 358 r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~G--paa~dl~~~F~qrW~~~~~~~~l~~~~-- 433 (662)
-. |+ --.+++.++- -.|.||...|++.|.--..+.+.....
T Consensus 193 Sl-Tq----------------------------------vkElGv~v~NCpclakDL~kiFe~yW~lg~~~s~~p~~wp~ 237 (456)
T KOG3603|consen 193 SL-TQ----------------------------------VKELGVVVRNCPCLAKDLKKIFERYWYLGNAKSLIPKKWPN 237 (456)
T ss_pred hc-cc----------------------------------eeEeeeEEecChhHHHHHHHHHHHHhcCCCCCccCCCCCcc
Confidence 22 10 0133333332 369999999999998543322110000
Q ss_pred ccCc-ccCCCCCCCCCCCCCCceeeEEeeccCCcCCCCCCChhHHhhcccccCCCCcchhHHHHHHHHHHHhccceEEEe
Q 006070 434 ELGD-IIIPPSPVMYPDDHDTWNVQLFRSIDGGAAFGFPETPEDAARAGLVSGKDNIIDRSIQDAYIHAIRRAKNFIYIE 512 (662)
Q Consensus 434 ~~~~-~~~P~~~~~~~~~~~~~~vQv~rS~~~~s~~~~p~~~~~~~~~~l~~g~~~~~e~sI~~ay~~aI~~A~~~IYIE 512 (662)
.+.. ...|. |....-+......++..|-+ | | +..+ ..-=.+|.++.|..|+.||||.
T Consensus 238 ~~st~~N~~~-p~~~~~dg~~~~~y~saSP~-------~----------~-~~~g---rt~DL~ail~~i~~A~~fv~is 295 (456)
T KOG3603|consen 238 CYSTHYNKPL-PMKIAVDGTPATPYISASPP-------P----------L-NPSG---RTWDLEAILNTIDEAQKFVYIS 295 (456)
T ss_pred cccccccccC-cceeecCCCCcceEEccCCC-------C----------C-CCCC---CchhHHHHHHHHHHHhhheeee
Confidence 0000 00000 00000011122233322210 0 1 1111 1223689999999999999996
Q ss_pred e-ccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCCCC
Q 006070 513 N-QYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPE 568 (662)
Q Consensus 513 n-qYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~pe 568 (662)
- +||=+..+. +. .|-- +|=++|.+|+-|| |+|++++..|+.
T Consensus 296 VMdY~Ps~~y~--------k~---~~fw--~iDdaiR~aa~Rg--V~vR~lvs~~~~ 337 (456)
T KOG3603|consen 296 VMDYFPSTIYS--------KN---HRFW--EIDDAIRRAAVRG--VKVRLLVSCWKH 337 (456)
T ss_pred ehhccchheee--------cC---cchh--hhhHHHHHHhhcc--eEEEEEEeccCC
Confidence 4 566444331 11 1222 6778899998888 999999999874
No 140
>COG1502 Cls Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes [Lipid metabolism]
Probab=98.37 E-value=1.9e-06 Score=95.99 Aligned_cols=133 Identities=22% Similarity=0.268 Sum_probs=97.9
Q ss_pred HHHHHHHHcCCcEEEEEE-EeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCcc--ccccccccCccC
Q 006070 206 EDIFDAITNARHMIYITG-WSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRT--SVSLLKKDGLMA 282 (662)
Q Consensus 206 ~~l~~aI~~Ak~~I~I~~-w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~--s~~~~~~~~~~~ 282 (662)
..++.+|.+|+++|+|+. |.+ .+..+.++|+.++++||+|+|++ +..+ ......
T Consensus 273 ~~~~~~i~~A~~~i~i~~pYf~----------------~~~~~~~al~~a~~~Gv~V~ii~-~~~~~~d~~~~~------ 329 (438)
T COG1502 273 RLLLKAINSARESILIATPYFV----------------PDRELLAALKAAARRGVDVRIII-PSLGANDSAIVH------ 329 (438)
T ss_pred HHHHHHHHhhceEEEEEcCCcC----------------CCHHHHHHHHHHHhcCCEEEEEe-CCCCCCChHHHH------
Confidence 679999999999999997 543 23578899999999999999997 7322 211110
Q ss_pred CChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCC
Q 006070 283 THDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTP 362 (662)
Q Consensus 283 ~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~ 362 (662)
.......+.+...|+++..++. ....|.|++|||++ ++++|+.|+...-+.
T Consensus 330 ~~~~~~~~~l~~~gv~i~~~~~----------------g~~lH~K~~iiD~~-----------~~~vGS~N~~~rS~~-- 380 (438)
T COG1502 330 AAYRAYLKELLEAGVKVYEYPG----------------GAFLHSKVMIIDDR-----------TVLVGSANLDPRSLR-- 380 (438)
T ss_pred HHHHHHHHHHHHhCCEEEEecC----------------CCcceeeEEEEcCC-----------EEEEeCCcCCHhHHH--
Confidence 0013456677788999865531 04799999999999 999999999885442
Q ss_pred CCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCH-HHHHHHHHHHHHHHhh
Q 006070 363 FHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQRWRKQ 423 (662)
Q Consensus 363 ~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~qrW~~~ 423 (662)
.| -.+.+.|+.+ .+.++...|...|...
T Consensus 381 -------------lN--------------------~E~~~~i~d~~~~~~~~~~~~~~~~~s 409 (438)
T COG1502 381 -------------LN--------------------FEVGLVIEDPELALKLRREFEADLARS 409 (438)
T ss_pred -------------Hh--------------------hhheeEEeCHHHHHHHHHHHHHHHHHH
Confidence 01 1456777777 7999999999777654
No 141
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=98.36 E-value=2.8e-06 Score=82.32 Aligned_cols=59 Identities=29% Similarity=0.343 Sum_probs=49.7
Q ss_pred hhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCCC
Q 006070 491 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP 567 (662)
Q Consensus 491 e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~p 567 (662)
..++.++++++|.+|++.|+|+++||.+.. .....+|..+|..|.++| ++|+|++...+
T Consensus 19 ~~~~~~~i~~~I~~A~~~I~i~~~~~~~~~----------------~~~~~~l~~~L~~a~~rG--v~V~il~~~~~ 77 (176)
T cd00138 19 GRSDLDALLEAISNAKKSIYIASFYLSPLI----------------TEYGPVILDALLAAARRG--VKVRILVDEWS 77 (176)
T ss_pred cchHHHHHHHHHHhhheEEEEEEeEecccc----------------cccchHHHHHHHHHHHCC--CEEEEEEcccc
Confidence 578999999999999999999999998741 001137999999999998 99999999765
No 142
>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]
Probab=98.23 E-value=1.6e-06 Score=96.90 Aligned_cols=105 Identities=17% Similarity=0.294 Sum_probs=79.4
Q ss_pred CCCCCcEEEEEECCe---eeeeeeeecCCCCCCeeeeEEEEeccCC----------------CceEEEEEEe-cCCCC-C
Q 006070 38 KGGSELYATIDLEKA---RVGRTRMLKKEQSNPRWYESFHIYCAHM----------------ASNIIFTVKD-DNPIG-A 96 (662)
Q Consensus 38 ~g~~DPYv~v~l~~~---~~~kT~vi~~~t~nP~WNE~F~~~v~~~----------------~~~L~~~V~D-~d~~~-~ 96 (662)
++.+||||+|...+. +..+|+++++ |.||.|||.|+|.+... ...|.+.+|+ .+.+. +
T Consensus 148 ~~~~dp~~~v~~~g~~~~~~~~T~~~kk-t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~ 226 (800)
T KOG2059|consen 148 NGQCDPFARVTLCGPSKLKEKKTKVKKK-TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVIND 226 (800)
T ss_pred CCCCCcceEEeecccchhhccccceeee-ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhh
Confidence 566999999999542 2248999999 99999999999977543 2357788888 45554 7
Q ss_pred ceeEEEEeeeeeecCCceEEEEEeccCC-CCCCC---CCCCceEEEEEeec
Q 006070 97 TLIGRAYVPVEEVLGGEEVDKWVEILDE-DRNPI---SSGSKIHVKLQYFD 143 (662)
Q Consensus 97 ~~IG~~~ipl~~l~~g~~~~~w~~L~~~-~~k~~---k~~G~i~l~l~f~~ 143 (662)
+|+|++.+|+..+......+.||-|... +|+.. ..-|.+++.+.|+.
T Consensus 227 ~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~~~~~~lGslrl~v~y~~ 277 (800)
T KOG2059|consen 227 VFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKSSDGGDLGSLRLNVTYTE 277 (800)
T ss_pred hhceeEEeehhhhhhccCccceEEEecCCCcccCCCCCCccceeeeEEeee
Confidence 9999999999888755566789999753 34322 23477899999864
No 143
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.16 E-value=2.6e-06 Score=76.99 Aligned_cols=109 Identities=25% Similarity=0.435 Sum_probs=76.5
Q ss_pred EEEEEEEeecCCCCCCCCccccc---cCCCCCCCCCcEEEEEE---CCeeeeeeeeecCCCCCCeeeeEEEEecc-----
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKL---LGGLGKGGSELYATIDL---EKARVGRTRMLKKEQSNPRWYESFHIYCA----- 78 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~---~~~~~~g~~DPYv~v~l---~~~~~~kT~vi~~~t~nP~WNE~F~~~v~----- 78 (662)
|.|.|++|.+|+..- ..+... .+-...-..++||++.+ .+.+..+|+++-+ +..|++|-+|+|+|+
T Consensus 1 lsv~I~RA~GLqaAA--~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVAr-SFcPeF~Hh~Efpc~lv~~~ 77 (143)
T cd08683 1 LSVQIHRASGLQAAA--RALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVAR-SFCPEFNHHVEFPCNLVVQR 77 (143)
T ss_pred CeEEeehhhhHHHHH--HHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhh-hcCCCccceEEEecccEEEc
Confidence 578999999998710 000000 00001112689999996 4445568999999 999999999999987
Q ss_pred ---C--------CCceEEEEEEecCCC-----------CCceeEEEEeeeeeecC-CceEEEEEec
Q 006070 79 ---H--------MASNIIFTVKDDNPI-----------GATLIGRAYVPVEEVLG-GEEVDKWVEI 121 (662)
Q Consensus 79 ---~--------~~~~L~~~V~D~d~~-----------~~~~IG~~~ipl~~l~~-g~~~~~w~~L 121 (662)
+ ....+.|+||+..+- +|=+||.+.||+.+|.. ...+..|||+
T Consensus 78 ~~Ge~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 78 NSGEAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred CCCccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 2 124689999987532 23489999999999985 3458889985
No 144
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=8.5e-07 Score=91.42 Aligned_cols=200 Identities=14% Similarity=0.074 Sum_probs=121.3
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEE--EEeccCCC
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESF--HIYCAHMA 81 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F--~~~v~~~~ 81 (662)
..|+.+|..|++|+++ +.++..|||++..+.. ....||++..+ ++||+|||+- .+...+..
T Consensus 93 ~~~~~tl~~a~~lk~~------------~~~~~~d~~~~~~llpga~kl~slr~~t~~n-~lN~~w~etev~~~i~~~~~ 159 (362)
T KOG1013|consen 93 RMLDTTLDRAKGLKPM------------DINGLADPYVKLHLLPGAGKLNSLRTKTTRN-TLNPEWNETEVYEGITDDDT 159 (362)
T ss_pred hhcceeechhcccchh------------hhhhhcchHHhhhcccchhhhhhhhHHhhcc-CcCcceeccceecccccchh
Confidence 4578999999999985 5678899999999942 12248888888 9999999984 44444332
Q ss_pred --ceEEEEEEecCCCC-CceeEEEEeeeeeecCCce--EEEEEeccCCCC----CCCCCCCceEEEEEeeccccchh--h
Q 006070 82 --SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEE--VDKWVEILDEDR----NPISSGSKIHVKLQYFDVTKDRS--W 150 (662)
Q Consensus 82 --~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~--~~~w~~L~~~~~----k~~k~~G~i~l~l~f~~~~~~~~--W 150 (662)
..+.+.|+|++.+. ++++|+..+++..|.+.+. ...|+.-.-+.+ ...+..|+|.+++.|.......- |
T Consensus 160 ~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt~ 239 (362)
T KOG1013|consen 160 HLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVTI 239 (362)
T ss_pred hhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEEE
Confidence 56789999999988 6999999999999986543 334543322211 11356899999999976554432 3
Q ss_pred hh-cc-cCCCCCCCCCcccccccCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeee
Q 006070 151 AR-GI-RSAKYPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVY 227 (662)
Q Consensus 151 ~~-gI-~~~~~~g~~~~~~p~~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~ 227 (662)
.. +. ...+-.|-.+.|..++.--.| +.+|..-.++-..+.+..|-++-+|+-=--.| |.+.+-|+.|..+
T Consensus 240 iRc~~l~ssDsng~sDpyvS~~l~pdv-----~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL--a~~kv~lsvgd~~ 311 (362)
T KOG1013|consen 240 IRCSHLASSDSNGYSDPYVSQRLSPDV-----GKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL--AYKKVALSVGDYD 311 (362)
T ss_pred EEeeeeeccccCCCCCccceeecCCCc-----chhhcccCcchhccCCccccccccccCCccch--hcceEEEeecccC
Confidence 33 11 112222333333322211111 12222333333444455544333333222333 7888888888643
No 145
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=98.00 E-value=3e-06 Score=97.75 Aligned_cols=86 Identities=23% Similarity=0.350 Sum_probs=75.5
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeee-eeeeecCCCCCCeeeeEEEEeccCCC-ceEEE
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVG-RTRMLKKEQSNPRWYESFHIYCAHMA-SNIIF 86 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~-kT~vi~~~t~nP~WNE~F~~~v~~~~-~~L~~ 86 (662)
.++|.|++|-+|.+. |.+|.+|||++|.++++... |+..+.+ |+||++++.|.+.+.-+. ..+++
T Consensus 614 LvrVyvv~A~~L~p~------------D~ng~adpYv~l~lGk~~~~d~~~yip~-tlnPVfgkmfel~~~lp~ek~l~v 680 (1105)
T KOG1326|consen 614 LVRVYVVEAFSLQPS------------DGNGDADPYVKLLLGKKRTLDRAHYIPN-TLNPVFGKMFELECLLPFEKDLIV 680 (1105)
T ss_pred eEEEEEEEeeecccc------------CCCCCcCceeeeeeccchhhhhhhcCcC-CCCcHHHHHHHhhcccchhhccee
Confidence 478999999999983 77899999999999987643 7888998 999999999998876554 67899
Q ss_pred EEEecCCCC-CceeEEEEeeee
Q 006070 87 TVKDDNPIG-ATLIGRAYVPVE 107 (662)
Q Consensus 87 ~V~D~d~~~-~~~IG~~~ipl~ 107 (662)
.|+|+|.++ |+.||+..+.|+
T Consensus 681 ~vyd~D~~~~d~~iget~iDLE 702 (1105)
T KOG1326|consen 681 EVYDHDLEAQDEKIGETTIDLE 702 (1105)
T ss_pred EEEEeecccccchhhceehhhh
Confidence 999999998 799999999986
No 146
>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=97.89 E-value=7.1e-06 Score=95.74 Aligned_cols=104 Identities=16% Similarity=0.218 Sum_probs=82.8
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEE---ecc
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHI---YCA 78 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~---~v~ 78 (662)
-.|+|.|-|.-||+|+-- ..+.-.||||+.+|-. +.+.||+|+++ |.||.+||.... +..
T Consensus 1522 ~~~~LtImV~H~K~L~~L------------qdg~~P~pyVK~YLlPdp~k~sKRKTKvvrk-t~~PTfnE~LvY~g~p~~ 1588 (1639)
T KOG0905|consen 1522 NNGTLTIMVMHAKGLALL------------QDGQDPDPYVKTYLLPDPRKTSKRKTKVVRK-TRNPTFNEMLVYDGFPKE 1588 (1639)
T ss_pred cCceEEEEhhhhcccccc------------cCCCCCCcceeEEecCCchHhhhhhhccccc-cCCCchhhheeecCCchh
Confidence 468999999999999631 1133589999999932 22359999999 999999999764 444
Q ss_pred CCC-ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 79 HMA-SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 79 ~~~-~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
... ..|+++|+..+.+. +.++|.+.|||.++.-.++...||.|-
T Consensus 1589 ~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg 1634 (1639)
T KOG0905|consen 1589 ILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLG 1634 (1639)
T ss_pred hhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeecc
Confidence 333 68999999988876 699999999999988777777899993
No 147
>PLN02964 phosphatidylserine decarboxylase
Probab=97.89 E-value=5.4e-06 Score=94.97 Aligned_cols=102 Identities=14% Similarity=0.162 Sum_probs=78.7
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC-ceE
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA-SNI 84 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~-~~L 84 (662)
+.|.+.|+|++|+ |. -.|||..+-.-+.++.||.+.++ |+||+|||...|.+.... ...
T Consensus 52 ~~~~~~~~~~~~~----~~---------------~~~~~~~~~~~g~~~f~t~~~~~-~~~p~~~~~~~~~~~~~~~~~~ 111 (644)
T PLN02964 52 FSGIALLTLVGAE----MK---------------FKDKWLACVSFGEQTFRTETSDS-TDKPVWNSEKKLLLEKNGPHLA 111 (644)
T ss_pred ccCeEEEEeehhh----hc---------------cCCcEEEEEEecceeeeeccccc-cCCcccchhhceEeccCCcceE
Confidence 5688899999886 21 15898776655556789999999 999999999888775443 457
Q ss_pred EEEEEecCCCC-CceeEEEEeeeeeecCCceEEEE--EeccCCCCC
Q 006070 85 IFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKW--VEILDEDRN 127 (662)
Q Consensus 85 ~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w--~~L~~~~~k 127 (662)
.|.|+|.+.++ ++++|.+.++|.++...+..+.| |.+.++++.
T Consensus 112 ~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dgd 157 (644)
T PLN02964 112 RISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSSS 157 (644)
T ss_pred EEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCCC
Confidence 99999999998 69999999999888765443333 677777653
No 148
>PRK13912 nuclease NucT; Provisional
Probab=97.88 E-value=5.6e-05 Score=73.86 Aligned_cols=52 Identities=15% Similarity=0.236 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCCC
Q 006070 492 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP 567 (662)
Q Consensus 492 ~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~p 567 (662)
..+...++++|++|++.|+|+. |++++. +|+++|..|.+|| ++|+|+++..+
T Consensus 32 ~~~~~~l~~~I~~Ak~sI~i~~-Y~~~~~---------------------~i~~aL~~Aa~RG--V~VrIlld~~~ 83 (177)
T PRK13912 32 KDALNKLVSLISNARSSIKIAI-YSFTHK---------------------DIAKALKSAAKRG--VKISIIYDYES 83 (177)
T ss_pred HHHHHHHHHHHHhcccEEEEEE-EEEchH---------------------HHHHHHHHHHHCC--CEEEEEEeCcc
Confidence 4678999999999999999995 776543 7999999999999 99999999754
No 149
>PRK09428 pssA phosphatidylserine synthase; Provisional
Probab=97.87 E-value=7e-05 Score=83.43 Aligned_cols=139 Identities=14% Similarity=0.128 Sum_probs=91.6
Q ss_pred chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccC---
Q 006070 203 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDG--- 279 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~--- 279 (662)
.....+..+|.+|+++|+|++ | ||.. ...+.++|++++++||+|+||+ .+..+..++...+
T Consensus 251 ~l~~~~~~li~~A~~~i~I~T----P--YF~p---------~~~l~~~L~~a~~rGv~V~Ii~-~~~~andfy~~~d~~~ 314 (451)
T PRK09428 251 LLNKTIFHLMASAEQKLTICT----P--YFNL---------PAILVRNIIRLLRRGKKVEIIV-GDKTANDFYIPPDEPF 314 (451)
T ss_pred HHHHHHHHHHhccCcEEEEEe----C--CcCC---------CHHHHHHHHHHHhcCCcEEEEc-CCcccccCcCCCccHH
Confidence 456788899999999999986 2 4542 3479999999999999999998 6553322222111
Q ss_pred -ccCCChHHHH-----------hhhcCCC---cEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccc
Q 006070 280 -LMATHDEETE-----------KFFQGTD---VHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRR 344 (662)
Q Consensus 280 -~~~~~~~~~~-----------~~l~~~~---v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~ 344 (662)
.++.. .... ..+.++| |++..++ .++-|-|.++||++
T Consensus 315 ~~~~~~-py~ye~~lr~f~~~~~~li~~G~l~v~i~~~~-----------------~~~~HaK~i~vD~~---------- 366 (451)
T PRK09428 315 KIIGAL-PYLYEINLRRFAKRLQYYIDNGQLNVRLWKDG-----------------DNSYHLKGIWVDDR---------- 366 (451)
T ss_pred HHhhhh-HHHHHHhhhhhHHHhhhhhhcCcceEEEEecC-----------------CCcceEEEEEEeCC----------
Confidence 01110 0111 1123344 5544321 36899999999998
Q ss_pred eeEEeccccCcCccccCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHHHHHHHHHHHHHHHh
Q 006070 345 IMSFVGGIDLCDGRYDTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRWRK 422 (662)
Q Consensus 345 ~vafvGG~nl~~~r~dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW~~ 422 (662)
++++||.|+..--|.- | ..+.+.|..|. ..+...|.+....
T Consensus 367 -~~~iGS~Nld~RS~~l---------------n--------------------~E~~l~i~d~~-~~l~~~~~~E~~~ 407 (451)
T PRK09428 367 -WMLLTGNNLNPRAWRL---------------D--------------------LENALLIHDPK-QELAEQREKELEL 407 (451)
T ss_pred -EEEEcCCCCChhHhhh---------------c--------------------ccceEEEECCh-HHHHHHHHHHHHH
Confidence 9999999998855531 1 13466677776 7888888877653
No 150
>PF13918 PLDc_3: PLD-like domain
Probab=97.82 E-value=0.00012 Score=70.68 Aligned_cols=69 Identities=22% Similarity=0.327 Sum_probs=53.3
Q ss_pred CCceecCCCcccCCcchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHh-hcCCeEEEEE
Q 006070 188 VPEIPLAGGKYYEPHRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKA-SEGVRVCMLV 265 (662)
Q Consensus 188 ~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA-~~GV~VrvLl 265 (662)
.|+.....|+.. -.++++..|++|+++|||+-..+-|.+... .+.+ ....|+++|+++| +|||+||+|+
T Consensus 71 SPp~~~~~gRT~----DldAIl~~I~~A~~fI~IsVMdY~P~~~~~-~~~~----YWP~ID~ALR~AA~~R~V~VRlLI 140 (177)
T PF13918_consen 71 SPPPFCPKGRTL----DLDAILSVIDSAKKFIYISVMDYLPTSRYS-KPNR----YWPVIDDALRRAAIERGVKVRLLI 140 (177)
T ss_pred CCcccCCCCCCc----HHHHHHHHHHhHhheEEEEEeecCCeeecC-CCCC----cchhHHHHHHHHHHHcCCeEEEEE
Confidence 565555556532 368999999999999999999888855332 2221 5678999999998 7999999998
No 151
>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.77 E-value=2.2e-05 Score=81.13 Aligned_cols=100 Identities=25% Similarity=0.235 Sum_probs=76.7
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC--
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM-- 80 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~-- 80 (662)
..-|.|+++++..|..+ |.+|-+||||..++.. .-.+||.+.++ |.||++||.|.+.+.+.
T Consensus 232 ~~~l~vt~iRc~~l~ss------------Dsng~sDpyvS~~l~pdv~~~fkkKt~~~K~-t~~p~fd~~~~~~i~pgdL 298 (362)
T KOG1013|consen 232 TPGLIVTIIRCSHLASS------------DSNGYSDPYVSQRLSPDVGKKFKKKTQQKKK-TLNPEFDEEFFYDIGPGDL 298 (362)
T ss_pred CCceEEEEEEeeeeecc------------ccCCCCCccceeecCCCcchhhcccCcchhc-cCCccccccccccCCccch
Confidence 35588999999899874 6788899999999942 22358999999 99999999998877543
Q ss_pred C-ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEec
Q 006070 81 A-SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 121 (662)
Q Consensus 81 ~-~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L 121 (662)
+ ..+.|.|+|++..+ .+++|-...... ..++...+|+.-
T Consensus 299 a~~kv~lsvgd~~~G~s~d~~GG~~~g~~--rr~~v~~h~gr~ 339 (362)
T KOG1013|consen 299 AYKKVALSVGDYDIGKSNDSIGGSMLGGY--RRGEVHKHWGRC 339 (362)
T ss_pred hcceEEEeecccCCCcCccCCCccccccc--ccchhhcCcccc
Confidence 2 57999999999985 699998766543 335555666543
No 152
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=97.75 E-value=0.00013 Score=75.43 Aligned_cols=185 Identities=18% Similarity=0.218 Sum_probs=110.5
Q ss_pred EEEeeccccchhhhhcccCCC-CCCCCCcccccccCceeeEcccCCCCCCCCCceecCCCcccCCcchHHHHHHHHHcCC
Q 006070 138 KLQYFDVTKDRSWARGIRSAK-YPGVPFTFYPQRKGCKVSLYQDAHVPDNFVPEIPLAGGKYYEPHRCWEDIFDAITNAR 216 (662)
Q Consensus 138 ~l~f~~~~~~~~W~~gI~~~~-~~g~~~~~~p~~~g~~v~l~~d~h~~~~~~p~~~l~~g~~~~~~~~~~~l~~aI~~Ak 216 (662)
+.+|.|...+. ..|. ..|+|.+ ...+.-.++++|... |. .+. ..+-|.+...|.+|+
T Consensus 90 S~TYwP~~SD~------~~P~LdLGWP~~-~~~~g~Tr~~vy~qP--------p~--~~~-----p~IKE~vR~~I~~A~ 147 (284)
T PF07894_consen 90 SGTYWPMQSDT------EPPPLDLGWPET-PSYKGVTRATVYFQP--------PK--DGQ-----PHIKEVVRRMIQQAQ 147 (284)
T ss_pred CcccCCCcCCC------CCCCCCCCCCCC-CcccCCceEEEEeCC--------CC--CCC-----CCHHHHHHHHHHHhc
Confidence 66777765543 1122 3577762 223444789999863 11 111 145689999999999
Q ss_pred cEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCcccccccc---ccCccCCChHHHHhhhc
Q 006070 217 HMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLK---KDGLMATHDEETEKFFQ 293 (662)
Q Consensus 217 ~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~---~~~~~~~~~~~~~~~l~ 293 (662)
+.|-|..=.| .|. .-|.++|.++-+|||-||||| |..+...++. +.++ + ...++
T Consensus 148 kVIAIVMD~F-------TD~--------dIf~DLleAa~kR~VpVYiLL-D~~~~~~Fl~Mc~~~~v---~----~~~~~ 204 (284)
T PF07894_consen 148 KVIAIVMDVF-------TDV--------DIFCDLLEAANKRGVPVYILL-DEQNLPHFLEMCEKLGV---N----LQHLK 204 (284)
T ss_pred ceeEEEeecc-------ccH--------HHHHHHHHHHHhcCCcEEEEe-chhcChHHHHHHHHCCC---C----hhhcC
Confidence 9999985444 232 357776666669999999998 9876543321 1111 1 11233
Q ss_pred CCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccCCCCcccccCCCc
Q 006070 294 GTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDTPFHSLFRTLDTA 373 (662)
Q Consensus 294 ~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt~~H~l~~~~~~~ 373 (662)
|++|+.+. +..++......+-..-++|+++||++ .+..|..=++..-. .-|
T Consensus 205 --nmrVRsv~-----G~~y~~rsg~k~~G~~~eKF~lvD~~-----------~V~~GSYSFtWs~~--~~~--------- 255 (284)
T PF07894_consen 205 --NMRVRSVT-----GCTYYSRSGKKFKGQLKEKFMLVDGD-----------KVISGSYSFTWSSS--RVH--------- 255 (284)
T ss_pred --CeEEEEec-----CCeeecCCCCeeeCcccceeEEEecc-----------cccccccceeeccc--ccc---------
Confidence 34443321 11111112234567899999999999 77888764433211 111
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCHHHHHHHHHHHHHH
Q 006070 374 HHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGPIAWDVLFNFEQRW 420 (662)
Q Consensus 374 ~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gpaa~dl~~~F~qrW 420 (662)
+-+-..++|.+|...-+.|..-.
T Consensus 256 ------------------------r~~~~~~tGq~Ve~FD~EFR~Ly 278 (284)
T PF07894_consen 256 ------------------------RNLVTVLTGQIVESFDEEFRELY 278 (284)
T ss_pred ------------------------cceeEEEeccccchHhHHHHHHH
Confidence 13567899999999999997643
No 153
>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.70 E-value=9.4e-05 Score=81.73 Aligned_cols=100 Identities=19% Similarity=0.300 Sum_probs=80.5
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC------CeeeeeeeeecCCCCCCeeeeEEEEeccCCC-
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE------KARVGRTRMLKKEQSNPRWYESFHIYCAHMA- 81 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~------~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~- 81 (662)
.+.|+|+-|.+|+=. ..|--.|||.|.+- +++..-|+++.| +-.|.+||+|+|.+....
T Consensus 1126 kvtvkvvaandlkwq-------------tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsn-nWaPKyNEtF~f~Lg~e~~ 1191 (1283)
T KOG1011|consen 1126 KVTVKVVAANDLKWQ-------------TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSN-NWAPKYNETFHFFLGNEGG 1191 (1283)
T ss_pred eEEEEEEecccccch-------------hccccccceEEEEecCcccchhhhccccccCC-CcCcccCceeEEEeccCCC
Confidence 478999999999742 24556899999983 244456888887 999999999999875432
Q ss_pred ---ceEEEEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEecc
Q 006070 82 ---SNIIFTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEIL 122 (662)
Q Consensus 82 ---~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~ 122 (662)
-.|.|.|+|+..-. |..+|-+.++|.++......-.|+||.
T Consensus 1192 Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLg 1236 (1283)
T KOG1011|consen 1192 PEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLG 1236 (1283)
T ss_pred CceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeecc
Confidence 36999999988665 689999999999999777788999994
No 154
>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.53 E-value=9.4e-05 Score=77.85 Aligned_cols=108 Identities=18% Similarity=0.186 Sum_probs=83.9
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEEC--Ce--eeeeeeeecCCCCCCeeeeEEEEeccCCC
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLE--KA--RVGRTRMLKKEQSNPRWYESFHIYCAHMA 81 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~--~~--~~~kT~vi~~~t~nP~WNE~F~~~v~~~~ 81 (662)
-.|.|+|.|++|++|.... ..+..++|||+|++- +. ...||+...+ |++|-+-+...|.-..+.
T Consensus 267 ~~g~l~vEii~ar~l~~k~-----------~~k~~~apyVkVYlL~~g~c~ak~ktk~A~k-T~~plyqq~l~f~~sp~~ 334 (405)
T KOG2060|consen 267 SKGDLEVEIIRARGLVVKP-----------GSKSLPAPYVKVYLLENGFCIAKKKTKSARK-TLDPLYQQQLSFDQSPPG 334 (405)
T ss_pred ccCceeEEEEecccccccC-----------CcccccCceeEEEEcCCCceecccccccccc-cCchhhhhhhhhccCCCc
Confidence 3589999999999998631 122368999999992 22 1248999998 998887778888776677
Q ss_pred ceEEEEEE-ecCCCC-CceeEEEEeeeeeecCCc-eEEEEEeccCCC
Q 006070 82 SNIIFTVK-DDNPIG-ATLIGRAYVPVEEVLGGE-EVDKWVEILDED 125 (662)
Q Consensus 82 ~~L~~~V~-D~d~~~-~~~IG~~~ipl~~l~~g~-~~~~w~~L~~~~ 125 (662)
..|.++|| |+..+. +.|+|.+.|-+.+|.-+. ..-.||+|....
T Consensus 335 k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgss 381 (405)
T KOG2060|consen 335 KYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSS 381 (405)
T ss_pred cEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCc
Confidence 89999998 445555 589999999999998655 778899998654
No 155
>smart00155 PLDc Phospholipase D. Active site motifs. Phosphatidylcholine-hydrolyzing phospholipase D (PLD) isoforms are activated by ADP-ribosylation factors (ARFs). PLD produces phosphatidic acid from phosphatidylcholine, which may be essential for the formation of certain types of transport vesicles or may be constitutive vesicular transport to signal transduction pathways. PC-hydrolysing PLD is a homologue of cardiolipin synthase, phosphatidylserine synthase, bacterial PLDs, and viral proteins. Each of these appears to possess a domain duplication which is apparent by the presence of two motifs containing well-conserved histidine, lysine, aspartic acid, and/or asparagine residues which may contribute to the active site. An E. coli endonuclease (nuc) and similar proteins appear to be PLD homologues but possess only one of these motifs. The profile contained here represents only the putative active site regions, since an accurate multiple alignment of the repeat units has not be
Probab=97.53 E-value=7e-05 Score=50.05 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=23.2
Q ss_pred cCCccceEEEcCCCCCCCccccceeEEeccccCcCc
Q 006070 322 FTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDG 357 (662)
Q Consensus 322 ~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~ 357 (662)
.++|+|++|||++ .+|+||.|++..
T Consensus 3 ~~~H~K~~v~D~~-----------~~~iGs~N~~~~ 27 (28)
T smart00155 3 GVLHTKLMIVDDE-----------IAYIGSANLDGR 27 (28)
T ss_pred CcEEeEEEEEcCC-----------EEEEeCccCCCC
Confidence 6899999999999 999999999874
No 156
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=97.50 E-value=0.00041 Score=79.53 Aligned_cols=112 Identities=21% Similarity=0.347 Sum_probs=85.3
Q ss_pred ceeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC------eeeeeeeeecCCCCCCeeeeE-EEEe-
Q 006070 5 LLHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK------ARVGRTRMLKKEQSNPRWYES-FHIY- 76 (662)
Q Consensus 5 ~~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~------~~~~kT~vi~~~t~nP~WNE~-F~~~- 76 (662)
...++|.|+||++.=|..++ .--||.|.+-+ .+..||+++..++.||+|||. |.|.
T Consensus 700 vIA~t~sV~VISgqFLSdrk----------------vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~K 763 (1189)
T KOG1265|consen 700 VIAATLSVTVISGQFLSDRK----------------VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRK 763 (1189)
T ss_pred eEEeeEEEEEEeeeeccccc----------------cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccce
Confidence 46789999999999997631 33699999943 133599999988999999986 7764
Q ss_pred --ccCCCceEEEEEEecCCCCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEE
Q 006070 77 --CAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQ 140 (662)
Q Consensus 77 --v~~~~~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~ 140 (662)
+++. ..|.|-|+++.- ++||.-.+|+..|.+| .+.+-|.++.++|+ .-..|.+.+.
T Consensus 764 VvLpeL-A~lRiavyeEgg---K~ig~RIlpvd~l~~G---Yrhv~LRse~Nqpl-~lp~Lfv~i~ 821 (1189)
T KOG1265|consen 764 VVLPEL-ASLRIAVYEEGG---KFIGQRILPVDGLNAG---YRHVCLRSESNQPL-TLPALFVYIV 821 (1189)
T ss_pred ecccch-hheeeeeeccCC---ceeeeeccchhcccCc---ceeEEecCCCCCcc-ccceeEEEEE
Confidence 2333 689999999754 9999999999999999 67778877777765 3344544443
No 157
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=97.20 E-value=0.00026 Score=59.93 Aligned_cols=96 Identities=16% Similarity=0.298 Sum_probs=66.6
Q ss_pred EEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEE--EEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC---CceEE
Q 006070 11 HVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYAT--IDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM---ASNII 85 (662)
Q Consensus 11 ~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~--v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~---~~~L~ 85 (662)
-+||+.+++|.=. .- ......-|++ +.+.+....||++.+. ..||+++|+|.|.++-. ...|.
T Consensus 2 witv~~c~d~s~~---~~--------~~e~~~i~ikg~~tl~kpv~~KsS~rrg-s~d~~f~ETFVFqi~l~qL~~V~L~ 69 (103)
T cd08684 2 WITVLKCKDLSWP---SS--------CGENPTIYIKGILTLPKPVHFKSSAKEG-SNDIEFMETFVFAIKLQNLQTVRLV 69 (103)
T ss_pred EEEEEEecccccc---cc--------cCcCCeeEEEEEEecCCCccccchhhcC-CCChhHHHHHHHHHHHhhccceEEE
Confidence 4789999998631 10 1122334664 5556655579998887 99999999999987643 24677
Q ss_pred EEEEecCCCC-CceeEEEEeeeeeecCCceEEEEEec
Q 006070 86 FTVKDDNPIG-ATLIGRAYVPVEEVLGGEEVDKWVEI 121 (662)
Q Consensus 86 ~~V~D~d~~~-~~~IG~~~ipl~~l~~g~~~~~w~~L 121 (662)
|.|+. ... .+.||.+.+.++++- .++.++|.++
T Consensus 70 fsv~~--~~~RKe~iG~~sL~l~s~g-eeE~~HW~e~ 103 (103)
T cd08684 70 FKIQT--QTPRKRTIGECSLSLRTLS-TQETDHWLEI 103 (103)
T ss_pred EEeec--cCCccceeeEEEeecccCC-HHHhhhhhcC
Confidence 88876 333 589999999998763 3456778653
No 158
>PF13918 PLDc_3: PLD-like domain
Probab=96.88 E-value=0.028 Score=54.48 Aligned_cols=54 Identities=30% Similarity=0.516 Sum_probs=42.6
Q ss_pred HHHHHHHHHhccceEEEeecccccccc------ccccCCCCCccccccccchHHHHHHHHHHH-hcCCceEEEEEecCCC
Q 006070 495 QDAYIHAIRRAKNFIYIENQYFLGSSF------AWSADGIKPEEINALHLIPKELSLKIVSKI-EAGERFTVYIVVPMWP 567 (662)
Q Consensus 495 ~~ay~~aI~~A~~~IYIEnqYFi~~~~------~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~-~~g~~~~V~Iv~P~~p 567 (662)
.+|.++.|..|++||||+===++|... .|+ .|-++|.+|+ .|| |+|++++-.|.
T Consensus 84 ldAIl~~I~~A~~fI~IsVMdY~P~~~~~~~~~YWP-----------------~ID~ALR~AA~~R~--V~VRlLIS~W~ 144 (177)
T PF13918_consen 84 LDAILSVIDSAKKFIYISVMDYLPTSRYSKPNRYWP-----------------VIDDALRRAAIERG--VKVRLLISCWK 144 (177)
T ss_pred HHHHHHHHHhHhheEEEEEeecCCeeecCCCCCcch-----------------hHHHHHHHHHHHcC--CeEEEEEeecC
Confidence 589999999999999998665665442 254 5677777664 788 99999999996
No 159
>PF13091 PLDc_2: PLD-like domain; PDB: 2ZE4_A 2ZE9_A 1BYS_A 1BYR_A 1V0T_A 1V0U_A 1V0V_A 1V0S_A 1V0R_A 1V0W_A ....
Probab=96.87 E-value=0.0029 Score=57.41 Aligned_cols=44 Identities=23% Similarity=0.390 Sum_probs=35.4
Q ss_pred HHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCC
Q 006070 499 IHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMW 566 (662)
Q Consensus 499 ~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~ 566 (662)
+++|.+|++.|+|..+||... .|+.+|..+.++| ++|.|++-..
T Consensus 2 ~~~i~~A~~~i~i~~~~~~~~----------------------~i~~~l~~~~~~g--v~v~ii~~~~ 45 (126)
T PF13091_consen 2 IDLIKSAQKSIWIASPYITDP----------------------DIIKALLDAAKRG--VKVRIIVDSN 45 (126)
T ss_dssp HHHHHT-SSEEEEEESSS-SC----------------------HHHHHHHHHHHTT---EEEEEEECG
T ss_pred HHHHhccCCEEEEEEEecCcH----------------------HHHHHHHHHHHCC--CeEEEEECCC
Confidence 689999999999999999322 6888898998999 9999999864
No 160
>PRK05443 polyphosphate kinase; Provisional
Probab=96.74 E-value=0.006 Score=71.38 Aligned_cols=69 Identities=16% Similarity=0.119 Sum_probs=52.4
Q ss_pred HHHHHHHHhccc-----eEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCCCCCC
Q 006070 496 DAYIHAIRRAKN-----FIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGF 570 (662)
Q Consensus 496 ~ay~~aI~~A~~-----~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~peG~ 570 (662)
+..+..|++|.+ .|.|+--.+.+++ .|+.+|..|+++| ++|.|++|+.+ .
T Consensus 351 ~~~~~~i~~Aa~DP~V~~Ik~tlYr~~~~s---------------------~iv~aL~~Aa~~G--k~V~vlve~ka--r 405 (691)
T PRK05443 351 DPVVEFLRQAAADPDVLAIKQTLYRTSKDS---------------------PIVDALIEAAENG--KQVTVLVELKA--R 405 (691)
T ss_pred hHHHHHHHHhccCCCeeEEEEEEEEecCCH---------------------HHHHHHHHHHHcC--CEEEEEEccCc--c
Confidence 556789999999 7988765554443 7999999999999 99999999875 1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q 006070 571 PESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM 604 (662)
Q Consensus 571 ~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~ 604 (662)
.+ .|+. ..++++|.++|++
T Consensus 406 fd--------e~~n-------~~~~~~L~~aGv~ 424 (691)
T PRK05443 406 FD--------EEAN-------IRWARRLEEAGVH 424 (691)
T ss_pred cc--------HHHH-------HHHHHHHHHcCCE
Confidence 12 1222 2578999999985
No 161
>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]
Probab=96.60 E-value=0.00058 Score=79.51 Aligned_cols=85 Identities=18% Similarity=0.202 Sum_probs=61.7
Q ss_pred CCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccC----------CCceEEEEEEecCCCC-CceeEEEEe
Q 006070 36 LGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAH----------MASNIIFTVKDDNPIG-ATLIGRAYV 104 (662)
Q Consensus 36 ~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~----------~~~~L~~~V~D~d~~~-~~~IG~~~i 104 (662)
+..+-+|||+.|..-++. ..|-++.+ |+||.||++..|.-.+ .--.+.|+|+|.|..+ ++++|+...
T Consensus 222 dk~~~sdp~a~v~f~~qs-~~T~~v~~-tl~ptwdq~~~f~~~ei~ge~~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~ 299 (1105)
T KOG1326|consen 222 DKDDESDPDAAVEFCGQS-KETEVVPG-TLNPTWDQTIIFDEVEIYGEAHLVLKNPPIRVFEVYDLDRSGINEFKGRKKQ 299 (1105)
T ss_pred CcccCCCchhhhhccccc-ceeEeecC-cCCCCccceeeccceeecCccchhhcCCCeEEEEeehhhhhchHHhhccccc
Confidence 556779999999997664 36888887 9999999997663211 1136889999999988 699998876
Q ss_pred eeeeecCCceEEEEEeccC
Q 006070 105 PVEEVLGGEEVDKWVEILD 123 (662)
Q Consensus 105 pl~~l~~g~~~~~w~~L~~ 123 (662)
...=... ...-.|+++..
T Consensus 300 ~p~V~~~-~p~lkw~p~~r 317 (1105)
T KOG1326|consen 300 RPYVMVQ-CPALKWVPTMR 317 (1105)
T ss_pred ceEEEec-CCccceEEeec
Confidence 4432222 34456999974
No 162
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=96.46 E-value=0.066 Score=49.99 Aligned_cols=120 Identities=16% Similarity=0.335 Sum_probs=82.6
Q ss_pred EEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCee--eeeeeeecCCCCCCeeeeEEEEecc----CC--
Q 006070 9 TLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKAR--VGRTRMLKKEQSNPRWYESFHIYCA----HM-- 80 (662)
Q Consensus 9 ~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~--~~kT~vi~~~t~nP~WNE~F~~~v~----~~-- 80 (662)
.+.|+|.+..+++.. ...-||+...++.. .++|.........=.|||+|.+++. ..
T Consensus 8 ~~~l~i~~l~~~p~~----------------~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~ 71 (143)
T PF10358_consen 8 QFDLTIHELENLPSS----------------NGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSK 71 (143)
T ss_pred EEEEEEEEeECcCCC----------------CCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCC
Confidence 578999999999862 12345555555543 3455555544667799999988763 11
Q ss_pred ---CceEEEEEEecCCCCC-ceeEEEEeeeeeecC--CceEEEEEeccCCCCCCCCCCCceEEEEEeeccccch
Q 006070 81 ---ASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLG--GEEVDKWVEILDEDRNPISSGSKIHVKLQYFDVTKDR 148 (662)
Q Consensus 81 ---~~~L~~~V~D~d~~~~-~~IG~~~ipl~~l~~--g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~~~ 148 (662)
...+.|.|+....-+. ..+|.+.|.|.++.. ......-++|... + +....|+|++++.+....+
T Consensus 72 ~~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~--~--~~~a~L~isi~~~~~~~~~ 141 (143)
T PF10358_consen 72 EFQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKC--K--KSNATLSISISLSELREDP 141 (143)
T ss_pred cEeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccC--C--CCCcEEEEEEEEEECccCC
Confidence 1368899988754344 599999999999986 3566667777543 1 3568899999998876654
No 163
>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]
Probab=96.20 E-value=0.004 Score=66.44 Aligned_cols=99 Identities=15% Similarity=0.289 Sum_probs=77.3
Q ss_pred CCcEEEEEE---C-CeeeeeeeeecCCCCCCeeeeEEEEeccC---CC---------ceEEEEEEecCCCC--CceeEEE
Q 006070 41 SELYATIDL---E-KARVGRTRMLKKEQSNPRWYESFHIYCAH---MA---------SNIIFTVKDDNPIG--ATLIGRA 102 (662)
Q Consensus 41 ~DPYv~v~l---~-~~~~~kT~vi~~~t~nP~WNE~F~~~v~~---~~---------~~L~~~V~D~d~~~--~~~IG~~ 102 (662)
.|-|+.+.+ + .....||.|+++ |..|+++|.|.+.+.. .. -.+.|+++.+..|- |.++|.+
T Consensus 388 ld~fvr~efpl~nD~~qk~kt~vik~-t~SPdfde~fklni~rg~~~nr~fqR~fkr~g~kfeifhkggf~rSdkl~gt~ 466 (523)
T KOG3837|consen 388 LDQFVRLEFPLENDSRQKLKTDVIKV-TPSPDFDEDFKLNIRRGPGLNREFQRRFKRLGKKFEIFHKGGFNRSDKLTGTG 466 (523)
T ss_pred HHhhhcccccccccccccCccceeeC-CCCCCcccceeeeccCCCcccHHHHHHHHhcCeeEEEeeccccccccceecee
Confidence 567888776 2 233459999999 9999999999998864 11 24889999988764 7999999
Q ss_pred EeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 103 YVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 103 ~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
.|-|+.|...-++...++|++ |+. ..+|.|.+.++...
T Consensus 467 nikle~Len~cei~e~~~l~D--GRK-~vGGkLevKvRiR~ 504 (523)
T KOG3837|consen 467 NIKLEILENMCEICEYLPLKD--GRK-AVGGKLEVKVRIRQ 504 (523)
T ss_pred eeeehhhhcccchhhceeccc--ccc-ccCCeeEEEEEEec
Confidence 999999887777888899964 543 25789998888753
No 164
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=95.75 E-value=0.76 Score=52.48 Aligned_cols=92 Identities=22% Similarity=0.259 Sum_probs=61.1
Q ss_pred chHHHHHHHHHcCCc-----EEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccc
Q 006070 203 RCWEDIFDAITNARH-----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKK 277 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~-----~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~ 277 (662)
+.|+.+.+-|++|-. .|-++ |-|.+ ....+.++|.++|+.|-+|-+|| +.-.. +.
T Consensus 352 eSF~~Vv~fl~qAA~DP~VLAIKqT---------LYRt~------~dSpIV~ALi~AA~nGKqVtvlV--ELkAR--FD- 411 (696)
T COG0855 352 ESFEPVVEFLRQAAADPDVLAIKQT---------LYRTS------KDSPIVRALIDAAENGKQVTVLV--ELKAR--FD- 411 (696)
T ss_pred hhhHHHHHHHHHhhcCCCeEEEEEE---------EEecC------CCCHHHHHHHHHHHcCCeEEEEE--EEhhh--cC-
Confidence 457777888877752 22223 33433 35799999999999999999998 11000 00
Q ss_pred cCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCC
Q 006070 278 DGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSP 334 (662)
Q Consensus 278 ~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~ 334 (662)
...+-.+.+.|+.+||||+.-- ..+--|.|+++|=-+
T Consensus 412 ----EE~NI~WAk~LE~AGvhVvyG~----------------~glKtHAKm~lVvRr 448 (696)
T COG0855 412 ----EEANIHWAKRLERAGVHVVYGV----------------VGLKTHAKMLLVVRR 448 (696)
T ss_pred ----hhhhhHHHHHHHhCCcEEEecc----------------cceeeeeeEEEEEEe
Confidence 0112367789999999987411 247889999988665
No 165
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=95.67 E-value=0.07 Score=51.12 Aligned_cols=84 Identities=13% Similarity=0.226 Sum_probs=56.9
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCeeee---eeeeecCCCCCCeeeeEEEEecc--C
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKARVG---RTRMLKKEQSNPRWYESFHIYCA--H 79 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~---kT~vi~~~t~nP~WNE~F~~~v~--~ 79 (662)
...++|+|++|+++.-. ..+|-||++.| +++... .|+.+. ..+|.|||-.+|++. +
T Consensus 7 ~~~~~v~i~~~~~~~~~---------------~~~~l~V~v~l~~g~~~L~~pv~T~~v~--~~~~~WnEwL~fpI~i~d 69 (158)
T cd08398 7 NSNLRIKILCATYVNVN---------------DIDKIYVRTGIYHGGEPLCDNVNTQRVP--CSNPRWNEWLDYDIYIPD 69 (158)
T ss_pred CCCeEEEEEeeccCCCC---------------CcCeEEEEEEEEECCEEccCeeEecccC--CCCCccceeEEcccchhc
Confidence 45789999999998741 23688999877 554432 344332 468999998877653 2
Q ss_pred C--CceEEEEEEecCCC-C----CceeEEEEeeee
Q 006070 80 M--ASNIIFTVKDDNPI-G----ATLIGRAYVPVE 107 (662)
Q Consensus 80 ~--~~~L~~~V~D~d~~-~----~~~IG~~~ipl~ 107 (662)
. .+.|.|+|++...- + ...||.+.++|=
T Consensus 70 LPr~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LF 104 (158)
T cd08398 70 LPRSARLCLSICSVKGRKGAKEEHCPLAWGNINLF 104 (158)
T ss_pred CChhheEEEEEEEEecccCCCCceEEEEEEEEEEE
Confidence 2 36899999986431 1 146888877763
No 166
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=95.47 E-value=0.16 Score=54.55 Aligned_cols=119 Identities=11% Similarity=0.171 Sum_probs=87.3
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC--------C
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM--------A 81 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--------~ 81 (662)
+-|.|+|++|.+.. ....-.+...+++... .|--+.. +..|.||....+.++.. .
T Consensus 2 ivl~i~egr~F~~~---------------~~~~~vv~a~~ng~~l-~TDpv~~-~~~p~f~teL~WE~Dr~~l~~~r~~~ 64 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---------------PRHPIVVEAKFNGESL-ETDPVPH-TESPQFNTELAWECDRKALKQHRLQR 64 (340)
T ss_pred EEEEEecccCCCCC---------------CCccEEEEEEeCCcee-eecCCCC-CCCceeecceeeeccHHHHHHhhccC
Confidence 46899999999862 1245678889998765 5776666 99999999999887531 2
Q ss_pred ceEEEEEEecCCCC--CceeEEEEeeeeee---cCC--ceEEEEEeccCCCCCCCCCCCceEEEEEeeccc
Q 006070 82 SNIIFTVKDDNPIG--ATLIGRAYVPVEEV---LGG--EEVDKWVEILDEDRNPISSGSKIHVKLQYFDVT 145 (662)
Q Consensus 82 ~~L~~~V~D~d~~~--~~~IG~~~ipl~~l---~~g--~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~ 145 (662)
..|.++++.-|..+ .+.||.+.++|... ..+ .....||+|+..+.+-.+...+|.+.+......
T Consensus 65 tPiKl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~ 135 (340)
T PF12416_consen 65 TPIKLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS 135 (340)
T ss_pred CceEEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence 46888888877433 59999999999888 555 567889999976433223456788877775443
No 167
>TIGR03705 poly_P_kin polyphosphate kinase 1. Members of this protein family are the enzyme polyphosphate kinase 1 (PPK1). This family is found in many prokaryotes and also in Dictyostelium. Sequences in the seed alignment were taken from prokaryotic consecutive two-gene pairs in which the other gene encodes an exopolyphosphatase. It synthesizes polyphosphate from the terminal phosphate of ATP but not GTP, in contrast to PPK2.
Probab=95.31 E-value=0.046 Score=63.83 Aligned_cols=50 Identities=28% Similarity=0.187 Sum_probs=39.5
Q ss_pred hHHHHHHHHHcCCc----EEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCcc
Q 006070 204 CWEDIFDAITNARH----MIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRT 270 (662)
Q Consensus 204 ~~~~l~~aI~~Ak~----~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~ 270 (662)
..+.+..+|.+||+ +|+|..-.+ .+..+.++|.+||++||+|++|+ .+.-
T Consensus 505 ~~~~i~~ei~~Ak~g~~~~I~ik~n~l----------------~D~~ii~aL~~As~aGV~V~Liv-RGiC 558 (672)
T TIGR03705 505 LLELIDREIENARAGKPARIIAKMNSL----------------VDPDLIDALYEASQAGVKIDLIV-RGIC 558 (672)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEcCCC----------------CCHHHHHHHHHHHHCCCeEEEEE-eccc
Confidence 45556668888998 999986433 23589999999999999999998 6553
No 168
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=94.95 E-value=1.2 Score=47.55 Aligned_cols=135 Identities=21% Similarity=0.238 Sum_probs=76.4
Q ss_pred HHHHHHHHHcCC-----cEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccC
Q 006070 205 WEDIFDAITNAR-----HMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDG 279 (662)
Q Consensus 205 ~~~l~~aI~~Ak-----~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~ 279 (662)
|+.+.+-|++|- .+|-++-|-++ ....+.++|.++|+.|=+|.++| +.-.. + ..
T Consensus 20 f~~vv~fl~eAA~DP~V~aIk~TLYR~a---------------~~S~iv~aLi~AA~nGK~Vtv~v--ELkAR-F-DE-- 78 (352)
T PF13090_consen 20 FDPVVDFLREAAEDPDVLAIKITLYRVA---------------SNSPIVNALIEAAENGKQVTVLV--ELKAR-F-DE-- 78 (352)
T ss_dssp TCHHHHHHHHHCC-TTEEEEEEEESSS----------------TT-HHHHHHHHHHHTT-EEEEEE--STTSS-S-TT--
T ss_pred cHHHHHHHHHHhcCCCccEEEEEEEecC---------------CCCHHHHHHHHHHHcCCEEEEEE--EEecc-c-cH--
Confidence 345666776663 67888876442 25689999999999999999998 21111 0 00
Q ss_pred ccCCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccc
Q 006070 280 LMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRY 359 (662)
Q Consensus 280 ~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~ 359 (662)
..+-.+.+.|+++||+|+.-. | .+--|-|+++|=-+..+ +=+-.+++|-=|....
T Consensus 79 ---e~Ni~Wa~~Le~aGv~ViyG~--~--------------glKvHaK~~lI~R~e~~----~~~~Y~hlgTGNyNe~-- 133 (352)
T PF13090_consen 79 ---ENNIHWAKRLEEAGVHVIYGV--P--------------GLKVHAKICLIVRREGG----GLRRYAHLGTGNYNEK-- 133 (352)
T ss_dssp ---CCCCCCCHHHHHCT-EEEE----T--------------T-EE--EEEEEEEEETT----EEEEEEEEESS-SSTT--
T ss_pred ---HHHhHHHhhHHhcCeEEEcCC--C--------------ChhheeeEEEEEEEeCC----cEEEEEEEcCCCcCcc--
Confidence 001134567889999987521 2 36889999999765111 1112455443332221
Q ss_pred cCCCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCeeeeeeeeeCH-HHHHHHHHHHH
Q 006070 360 DTPFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWHDIHSRLEGP-IAWDVLFNFEQ 418 (662)
Q Consensus 360 dt~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWhDv~~~v~Gp-aa~dl~~~F~q 418 (662)
+. .-+-|+++.-.-| .+.|+...|..
T Consensus 134 --------------------------------TA-r~YtD~~l~Ta~~~i~~D~~~~F~~ 160 (352)
T PF13090_consen 134 --------------------------------TA-RIYTDLSLFTADPEIGADVAKLFNY 160 (352)
T ss_dssp --------------------------------HC-CCEEEEEEEE--HHHHHHHHHHHHH
T ss_pred --------------------------------ch-hheecceeecCCHHHHHHHHHHHHH
Confidence 11 2456888877776 68999999963
No 169
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=94.86 E-value=0.053 Score=60.65 Aligned_cols=75 Identities=21% Similarity=0.201 Sum_probs=57.7
Q ss_pred CCCCCCCCcEEEEEEC--C---eeeeeeeeecCCCCCCeeeeEEEEec-----cCCCceEEEEEEecCCCCC-ceeEEEE
Q 006070 35 GLGKGGSELYATIDLE--K---ARVGRTRMLKKEQSNPRWYESFHIYC-----AHMASNIIFTVKDDNPIGA-TLIGRAY 103 (662)
Q Consensus 35 ~~~~g~~DPYv~v~l~--~---~~~~kT~vi~~~t~nP~WNE~F~~~v-----~~~~~~L~~~V~D~d~~~~-~~IG~~~ 103 (662)
++..+++|||..++=- . ..+.||.++++ ++||.|-+. .++. .+....+++.++|++.-++ ++||++.
T Consensus 151 kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n-~l~p~w~~~-~i~~~~l~~~~~~~~~~i~~~d~~~~~~~~~ig~~~ 228 (529)
T KOG1327|consen 151 KDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKN-TLNPQWAPF-SISLQSLCSKDGNRPIQIECYDYDSNGKHDLIGKFQ 228 (529)
T ss_pred ccccccCCcceEEEEecCCCceeeccccceecc-CCCCccccc-ccchhhhcccCCCCceEEEEeccCCCCCcCceeEec
Confidence 4556779999987652 2 23469999999 999999864 3332 2334678999999999886 9999999
Q ss_pred eeeeeecC
Q 006070 104 VPVEEVLG 111 (662)
Q Consensus 104 ipl~~l~~ 111 (662)
.+++++..
T Consensus 229 tt~~~~~~ 236 (529)
T KOG1327|consen 229 TTLSELQE 236 (529)
T ss_pred ccHHHhcc
Confidence 99988864
No 170
>PLN03008 Phospholipase D delta
Probab=94.71 E-value=0.051 Score=63.92 Aligned_cols=75 Identities=17% Similarity=0.091 Sum_probs=42.5
Q ss_pred eecCCCcccCCc-chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCC-C-CCCCcchHHHHHHHHhh--cCCeEEEEE
Q 006070 191 IPLAGGKYYEPH-RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRR-P-KPGGDIMLGELLKKKAS--EGVRVCMLV 265 (662)
Q Consensus 191 ~~l~~g~~~~~~-~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~-~-~~~~~~~l~~lL~~kA~--~GV~VrvLl 265 (662)
..+..|+...-+ .+..+.++||++|||+|||+.=-|-...+....... . ..-.+..|...|.+|.+ ++-+|+|++
T Consensus 554 ~~l~~gk~~~ie~SIq~aYi~aIr~A~hFIYIENQYFiss~~~w~~~~~~~~~n~I~~eia~kI~~ki~~~e~f~V~IVi 633 (868)
T PLN03008 554 QHLECAKRLVVDKSIQTAYIQTIRSAQHFIYIENQYFLGSSYAWPSYRDAGADNLIPMELALKIVSKIRAKERFAVYVVI 633 (868)
T ss_pred hccccccccchhhhHHHHHHHHHHhhccEEEEehhhhhccccccccccccccccchhHHHHHHHHHHHhCCCCCEEEEEE
Confidence 345555555433 367899999999999999984211111111100000 0 01134456666666655 578888886
No 171
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=94.62 E-value=0.18 Score=43.29 Aligned_cols=86 Identities=20% Similarity=0.290 Sum_probs=64.1
Q ss_pred CCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEEEecCCCCCceeEEEEeeeeeecCCceEEEE
Q 006070 39 GGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEVLGGEEVDKW 118 (662)
Q Consensus 39 g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V~D~d~~~~~~IG~~~ipl~~l~~g~~~~~w 118 (662)
|-++--|++.+++..+++|.-.. ..+..|++.|.|.+. .+..|+|.|+=.|. ..+-|...+-|++...+ .-
T Consensus 7 ~~~eV~avLklDn~~VgqT~Wk~--~s~q~WDQ~Fti~Ld-RsRELEI~VywrD~--RslCav~~lrLEd~~~~----~~ 77 (98)
T cd08687 7 GCSEVSAVLKLDNTVVGQTQWKP--KSNQAWDQSFTLELE-RSRELEIAVYWRDW--RSLCAVKFLKLEDERHE----VQ 77 (98)
T ss_pred cccceEEEEEEcCeEEeeccccc--cccccccceeEEEee-cccEEEEEEEEecc--hhhhhheeeEhhhhccc----ce
Confidence 34688999999999899887653 468999999999986 45799999987665 46777778888874322 12
Q ss_pred EeccCCCCCCCCCCCceEEEEEe
Q 006070 119 VEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 119 ~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
.+| +++|.+...+.|
T Consensus 78 ~~l--------epqg~l~~ev~f 92 (98)
T cd08687 78 LDM--------EPQLCLVAELTF 92 (98)
T ss_pred ecc--------ccccEEEEEEEe
Confidence 233 357888888888
No 172
>PLN02352 phospholipase D epsilon
Probab=94.55 E-value=0.11 Score=60.85 Aligned_cols=63 Identities=19% Similarity=0.132 Sum_probs=38.5
Q ss_pred chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCC-CCC-CCCcchHHHHHHHHhhc--CCeEEEEE
Q 006070 203 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSR-RPK-PGGDIMLGELLKKKASE--GVRVCMLV 265 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~-~~~-~~~~~~l~~lL~~kA~~--GV~VrvLl 265 (662)
...++.++||++|||+|||+.=-|-...+.+..+. .+. .-.+..|.+.|.+|.++ +-+|+|++
T Consensus 453 SIq~AYi~AIr~AqhfIYIENQYFiss~~~w~~~~~~~~~N~I~~eIa~kI~~kir~~e~f~V~IVi 519 (758)
T PLN02352 453 SIHEAYVEAIRRAERFIYIENQYFIGGCHLWEKDNHCGCTNLIPIEIALKIASKIRAKERFAVYILI 519 (758)
T ss_pred HHHHHHHHHHHhhhhEEEEehhhhhccccccccccccchhcchHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 46899999999999999998421211111111111 000 11345777777777765 68888886
No 173
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=94.54 E-value=0.22 Score=48.49 Aligned_cols=71 Identities=11% Similarity=0.300 Sum_probs=49.2
Q ss_pred eEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCeeee---eeeeecCCCCCCeeeeEEEEecc--C
Q 006070 7 HGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKARVG---RTRMLKKEQSNPRWYESFHIYCA--H 79 (662)
Q Consensus 7 ~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~---kT~vi~~~t~nP~WNE~F~~~v~--~ 79 (662)
+..+.|+|+.|.+|.-. ....+-||++.| |++... .|+.+.- ..++.|||.+.|++. +
T Consensus 7 ~~~f~i~i~~~~~~~~~--------------~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~-~~~~~Wnewl~F~I~i~d 71 (173)
T cd08693 7 EEKFSITLHKISNLNAA--------------ERTMKVGVQAGLFHGGESLCKTVKTSEVSG-KNDPVWNETLEFDINVCD 71 (173)
T ss_pred CCCEEEEEEEeccCccC--------------CCCceEEEEEEEEECCEEccCceEccccCC-CCccccceeEEcccchhc
Confidence 45789999999999741 123567888766 555432 5655543 577999999887653 2
Q ss_pred C--CceEEEEEEecC
Q 006070 80 M--ASNIIFTVKDDN 92 (662)
Q Consensus 80 ~--~~~L~~~V~D~d 92 (662)
. .+.|.|+|++..
T Consensus 72 LPr~ArLciti~~~~ 86 (173)
T cd08693 72 LPRMARLCFAIYEVS 86 (173)
T ss_pred CChhHeEEEEEEEec
Confidence 2 368999999854
No 174
>COG3886 Predicted HKD family nuclease [DNA replication, recombination, and repair]
Probab=94.44 E-value=0.37 Score=46.98 Aligned_cols=140 Identities=20% Similarity=0.279 Sum_probs=94.0
Q ss_pred cchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEecCccccccccccCcc
Q 006070 202 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWDDRTSVSLLKKDGLM 281 (662)
Q Consensus 202 ~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd~~~s~~~~~~~~~~ 281 (662)
+.....+.+.|+.|++...+..++-. + .-.-|.+.|..+...||++|+|- ++--+
T Consensus 38 e~il~~Li~~l~k~~ef~IsVaFit~--------s------G~sll~~~L~d~~~Kgvkgkilt-s~Yln---------- 92 (198)
T COG3886 38 EKILPRLIDELEKADEFEISVAFITE--------S------GLSLLFDLLLDLVNKGVKGKILT-SDYLN---------- 92 (198)
T ss_pred hhHHHHHHHHHhcCCeEEEEEEEeeC--------c------cHHHHHHHHHHHhcCCceEEEec-ccccC----------
Confidence 45678999999999999988887642 2 23578899999999999999996 44322
Q ss_pred CCChHHHHhhhcCCCcEEEecCCCCCCCCCcccccccccccCCccceEEEcCCCCCCCccccceeEEeccccCcCccccC
Q 006070 282 ATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDIQISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYDT 361 (662)
Q Consensus 282 ~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~dt 361 (662)
-|++....+-+.-.+|+|+.+.- + ...+|-|-.+.-.... ..|++|+.||+++-..+
T Consensus 93 fTdP~al~~Ll~~~nve~r~~~~-~--------------~~~fH~KgYiFe~~~~--------~taiiGSsNlt~sALt~ 149 (198)
T COG3886 93 FTDPVALRKLLMLKNVELRVSTI-G--------------SANFHTKGYIFEHNTG--------ITAIIGSSNLTDSALTV 149 (198)
T ss_pred ccCHHHHHHHHhhhccceEEEec-C--------------ccccccceeEEEecce--------EEEEEccchhhhhhccc
Confidence 13333344444445677776531 1 2467777777544321 38999999999975421
Q ss_pred CCCcccccCCCcCCCCCCCCCCCCCCcCCCCCCCCee-eeeeeeeCHHHHHHHHHHHHHHH
Q 006070 362 PFHSLFRTLDTAHHDDFHQPNFPGASIEKGGPREPWH-DIHSRLEGPIAWDVLFNFEQRWR 421 (662)
Q Consensus 362 ~~H~l~~~~~~~~~~d~~~~~~~~~~~~~~~pr~pWh-Dv~~~v~Gpaa~dl~~~F~qrW~ 421 (662)
. .-|- -+...-.|..|..+...|+..|.
T Consensus 150 -n-------------------------------~Ewn~k~s~~~~g~i~~~~k~~f~r~~~ 178 (198)
T COG3886 150 -N-------------------------------EEWNLKVSSSKNGDIVKEVKVTFERQFQ 178 (198)
T ss_pred -C-------------------------------HHHHhhhccccccchHHHHHHHHHHHHH
Confidence 1 1121 11223468899999999999998
No 175
>KOG1329 consensus Phospholipase D1 [Lipid transport and metabolism]
Probab=94.34 E-value=0.16 Score=59.81 Aligned_cols=136 Identities=19% Similarity=0.160 Sum_probs=71.4
Q ss_pred chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCC---CCCCcchHHHHHHHHhhc--CCeEEEEE--ecCcc-----
Q 006070 203 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRP---KPGGDIMLGELLKKKASE--GVRVCMLV--WDDRT----- 270 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~---~~~~~~~l~~lL~~kA~~--GV~VrvLl--wd~~~----- 270 (662)
..-.+-+.+|++|||+|||+. .|++...... ....+..|.+-+.+|-++ --+|+|++ |-++.
T Consensus 566 SIq~AYv~~Ir~a~hFIYIEN------QfFi~ss~~~~~~~n~v~~ela~rIv~a~ra~e~frVYIVIPL~PgfEG~~~p 639 (887)
T KOG1329|consen 566 SIQNAYVKAIRNAEHFIYIEN------QFFIGSSFNWDSVLNKVGDELALRIVKAIRAGEKFRVYIVIPLWPGFEGDDTP 639 (887)
T ss_pred HHHHHHHHHHHhccceEEEee------eeEEeeccCCCcccchHHHHHHHHHHHHHhcCCceEEEEEEeCCccccCCCCC
Confidence 356889999999999999984 2222111100 011233444444444454 47888885 54221
Q ss_pred -cccc---c--cccCccCCChHHHHhhhcCCCcEEEecCCCCCCCCCccc--------ccccccccCCccceEEEcCCCC
Q 006070 271 -SVSL---L--KKDGLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQ--------DIQISAMFTHHQKIVVVDSPMP 336 (662)
Q Consensus 271 -s~~~---~--~~~~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~--------~~~~~~~~~hHqK~vVID~~~~ 336 (662)
+.++ + .... |........+.|++.|+.- ..|-...+++. +...+.+---|-|++|||++
T Consensus 640 ~~~svqaIl~wQyrT-ms~g~~sI~~~Lka~g~d~----~~yi~f~~lr~~g~~e~~~~~~~~emIYVHsK~mIvDD~-- 712 (887)
T KOG1329|consen 640 GSGSVQAILHWQYRT-MSMGYKSIYKALKAVGLDP----ADYIDFLGLRCLGNREEQAQRLRREMIYVHSKLMIVDDE-- 712 (887)
T ss_pred CcchHHHHHHHHHHH-HhhhHHHHHHHHHHhcCCc----cccceeeeeeeeeccccccccceEEEEEEeeeeEEecCC--
Confidence 1110 0 0000 1111235566777766551 11111111100 01122334569999999999
Q ss_pred CCCccccceeEEeccccCcCcccc
Q 006070 337 NGDPERRRIMSFVGGIDLCDGRYD 360 (662)
Q Consensus 337 ~~~~~~~~~vafvGG~nl~~~r~d 360 (662)
.+.+|+.||.+.-.+
T Consensus 713 ---------~vIIGSANINqRSm~ 727 (887)
T KOG1329|consen 713 ---------YVIIGSANINQRSML 727 (887)
T ss_pred ---------EEEEeecccchhhcc
Confidence 999999999985544
No 176
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=93.81 E-value=0.1 Score=53.34 Aligned_cols=49 Identities=29% Similarity=0.289 Sum_probs=39.2
Q ss_pred chHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEec
Q 006070 203 RCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVWD 267 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlwd 267 (662)
...+.+.+.|++|+++|+|..|. . .-..|.+.|++|++|||+|.++++.
T Consensus 10 ~I~~~i~elI~~Ae~eI~is~~~----------~------~l~~l~~~L~~a~~rGV~V~li~~~ 58 (233)
T PF11495_consen 10 TILERIRELIENAESEIYISIPP----------E------FLEELRDELEEAVDRGVKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHC-SSEEEEEE-G----------G------GHHHHHHHHHHHHHTT-EEEEEESS
T ss_pred HHHHHHHHHHHHhheEEEEEcCH----------H------HHHHHHHHHHHHHHCCCEEEEEEeC
Confidence 35788999999999999999873 1 2358999999999999999999966
No 177
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=93.06 E-value=0.58 Score=44.58 Aligned_cols=87 Identities=14% Similarity=0.235 Sum_probs=57.5
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCeeee---eeeeecCCCCCCeeeeEEEEecc--CC
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKARVG---RTRMLKKEQSNPRWYESFHIYCA--HM 80 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~---kT~vi~~~t~nP~WNE~F~~~v~--~~ 80 (662)
..++|+|..+.++... .....+-||++.| +++... .|+.... ..++.|||...|++. +.
T Consensus 8 ~~~~i~i~~~~~~~~~-------------~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~-~~~~~Wne~l~F~i~~~~L 73 (156)
T cd08380 8 FNLRIKIHGITNINLL-------------DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPF-STSVTWNEWLTFDILISDL 73 (156)
T ss_pred CCeEEEEEeecccccc-------------CCCceeEEEEEEEEECCEEccCceeccCCcC-CCCCcccceeEccchhhcC
Confidence 4678888888887641 0123577888876 554322 3333322 378999999887653 22
Q ss_pred --CceEEEEEEecCCCC---CceeEEEEeeeee
Q 006070 81 --ASNIIFTVKDDNPIG---ATLIGRAYVPVEE 108 (662)
Q Consensus 81 --~~~L~~~V~D~d~~~---~~~IG~~~ipl~~ 108 (662)
.+.|.|+|++.+..+ ...||.+.++|=+
T Consensus 74 P~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd 106 (156)
T cd08380 74 PREARLCLSIYAVSEPGSKKEVPLGWVNVPLFD 106 (156)
T ss_pred ChhheEEEEEEEEecCCCCcceEEEEEeEEeEc
Confidence 368999999876543 3799999888743
No 178
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=93.00 E-value=0.38 Score=46.17 Aligned_cols=68 Identities=18% Similarity=0.267 Sum_probs=49.0
Q ss_pred CCCCcEEEEEE--CCeeee---eeeeecCCCCCCeeeeEEEEecc--CC--CceEEEEEEecCCCC-CceeEEEEeeee
Q 006070 39 GGSELYATIDL--EKARVG---RTRMLKKEQSNPRWYESFHIYCA--HM--ASNIIFTVKDDNPIG-ATLIGRAYVPVE 107 (662)
Q Consensus 39 g~~DPYv~v~l--~~~~~~---kT~vi~~~t~nP~WNE~F~~~v~--~~--~~~L~~~V~D~d~~~-~~~IG~~~ipl~ 107 (662)
..+|-||++.| +++... .|+.+.- +..+.|||-..|++. +. .+.|.|+|||.+..+ ...||.+.++|=
T Consensus 28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f-~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lF 105 (159)
T cd08397 28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPF-KNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLF 105 (159)
T ss_pred CCCCEEEEEEEEECCEeccCcEEccccCC-CCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeE
Confidence 45789999987 554332 6666665 678899999887763 22 368999999976544 468998888763
No 179
>PLN02270 phospholipase D alpha
Probab=92.44 E-value=0.44 Score=56.24 Aligned_cols=144 Identities=17% Similarity=0.252 Sum_probs=73.2
Q ss_pred chHHHHHHHHHcCCcEEEEEE-EeeeceeEEec-CCCCCC-----CCCcchHHHHHHHHhh--cCCeEEEEEecCccccc
Q 006070 203 RCWEDIFDAITNARHMIYITG-WSVYTEISLVR-DSRRPK-----PGGDIMLGELLKKKAS--EGVRVCMLVWDDRTSVS 273 (662)
Q Consensus 203 ~~~~~l~~aI~~Ak~~I~I~~-w~~~p~~~L~r-~~~~~~-----~~~~~~l~~lL~~kA~--~GV~VrvLlwd~~~s~~ 273 (662)
....+.++||++||++|||+. |.++. .+-.. ++-.+. .-....|...|.+|.+ ++-+|+|++ -.. +-.
T Consensus 499 sI~~aYi~AI~~A~~~IYIENQYF~ss-s~~w~~~~~~~~~~~~~nlIp~el~~kI~~ri~~~e~f~VyIVi-P~~-peG 575 (808)
T PLN02270 499 SIQDAYIHAIRRAKDFIYIENQYFLGS-SFAWSADGIKPEDINALHLIPKELSLKIVSKIEAGEKFTVYVVV-PMW-PEG 575 (808)
T ss_pred HHHHHHHHHHHhhhhEEEeehhhhhhh-hhhhcccccccccccccccchHHHHHHHHHHHhCCCCCEEEEEE-CCC-CCC
Confidence 468899999999999999984 21111 11000 000000 0023455556666655 578899987 111 000
Q ss_pred cccccC---c-------cCCChHHHHhhhcCCCcE------E-EecCCC----------CCCCC----Cccc-ccccccc
Q 006070 274 LLKKDG---L-------MATHDEETEKFFQGTDVH------C-ILCPRN----------PDDGG----SFIQ-DIQISAM 321 (662)
Q Consensus 274 ~~~~~~---~-------~~~~~~~~~~~l~~~~v~------~-~~~~r~----------p~~~~----~~~~-~~~~~~~ 321 (662)
...... + |........+.|++.|+. + ++|++. |.... .... +...+..
T Consensus 576 ~~e~~~vq~il~wq~~TM~~~~~~I~~~Lk~~g~~~dp~dyL~ff~L~nre~~~~g~~~P~~~~~~~~~~~~aq~~rr~~ 655 (808)
T PLN02270 576 IPESGSVQAILDWQRRTMEMMYKDVIQALRAKGLEEDPRNYLTFFCLGNREVKKSGEYEPSEKPEPDTDYIRAQEARRFM 655 (808)
T ss_pred CcccchHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCccceEEEEeccccccccCcccCCccCCcccchhhhhhhcccee
Confidence 000000 0 111123456677766652 1 122221 11000 0000 0011224
Q ss_pred cCCccceEEEcCCCCCCCccccceeEEeccccCcCcccc
Q 006070 322 FTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDLCDGRYD 360 (662)
Q Consensus 322 ~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl~~~r~d 360 (662)
---|.|++|||++ .+.+|+.||...-++
T Consensus 656 I~vH~K~~ivDd~-----------~~~iGSaN~n~rS~~ 683 (808)
T PLN02270 656 IYVHTKMMIVDDE-----------YIIIGSANINQRSMD 683 (808)
T ss_pred EEEeeeEEEEcCC-----------EEEEecccccccccc
Confidence 5679999999999 999999999885554
No 180
>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]
Probab=92.32 E-value=0.24 Score=51.44 Aligned_cols=117 Identities=16% Similarity=0.177 Sum_probs=77.7
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEE
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNII 85 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~ 85 (662)
+.|.|-+.+++.++|+-. + .-.+-+.|-||++..+.+..+||.|... ..-=.|.|+|++.+. ....+.
T Consensus 49 ~tGiL~~H~~~GRGLr~~--p--------~~kglt~~~ycVle~drqh~aRt~vrs~-~~~f~w~e~F~~Dvv-~~~vl~ 116 (442)
T KOG1452|consen 49 STGILYFHAYNGRGLRMT--P--------QQKGLTVCFYCVLEPDRQHPARTRVRSS-GPGFAWAEDFKHDVV-NIEVLH 116 (442)
T ss_pred ccceEEEEEecccccccC--h--------hccCceeeeeeeeeecccCccccccccC-CCCccchhhceeecc-cceeee
Confidence 579999999999999852 1 1224567999999999887788888765 666689999999886 346888
Q ss_pred EEEEecCCCCC-c--eeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 86 FTVKDDNPIGA-T--LIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 86 ~~V~D~d~~~~-~--~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
+-|+.++..-. + ..| -|.+..+. .+.-++-+-|. ++..|++-+++.+..
T Consensus 117 ~lvySW~pq~RHKLC~~g--~l~~~~v~-rqspd~~~Al~------lePrgq~~~r~~~~D 168 (442)
T KOG1452|consen 117 YLVYSWPPQRRHKLCHLG--LLEAFVVD-RQSPDRVVALY------LEPRGQPPLRLPLAD 168 (442)
T ss_pred EEEeecCchhhccccccc--hhhhhhhh-hcCCcceeeee------cccCCCCceecccCC
Confidence 99998887542 2 344 12221111 12222222331 235678888888854
No 181
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=92.25 E-value=0.84 Score=43.50 Aligned_cols=101 Identities=16% Similarity=0.244 Sum_probs=71.2
Q ss_pred EEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC--------------CceEEEEEEecCCCCC-ceeEEEEeeeee
Q 006070 44 YATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM--------------ASNIIFTVKDDNPIGA-TLIGRAYVPVEE 108 (662)
Q Consensus 44 Yv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--------------~~~L~~~V~D~d~~~~-~~IG~~~ipl~~ 108 (662)
++-+.+++++. +|+-+.- +.+|.++|.|-|++... .+.|.+.|.-.|..+. .++|+-.+.-..
T Consensus 37 ~l~l~f~~QRF-~S~~Vp~-~~eP~f~e~Flf~l~~~~~~~~~~~~~lls~~~pihivli~~d~~~~~~Lv~s~~ldWR~ 114 (156)
T PF15627_consen 37 TLHLHFRGQRF-RSKPVPC-ACEPDFNEEFLFELPRDSFGAGSTATTLLSISDPIHIVLIRTDPSGETTLVGSHFLDWRK 114 (156)
T ss_pred EEEEEecCceE-ecCCccc-ccCCCCCCcEEEEecccccccccchhHhhcCCCceEEEEEEecCCCceEeeeeceehHHH
Confidence 44455578874 8999998 99999999999987543 1357888887787764 899999998877
Q ss_pred ecCCce--EEEEEeccCCCCCCCCCCCceEEEEEeecccc
Q 006070 109 VLGGEE--VDKWVEILDEDRNPISSGSKIHVKLQYFDVTK 146 (662)
Q Consensus 109 l~~g~~--~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~ 146 (662)
+...+. ...-..|.+......-..|.|.+++...|...
T Consensus 115 vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~~ 154 (156)
T PF15627_consen 115 VLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNLN 154 (156)
T ss_pred HhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCCC
Confidence 764333 24455665533221115789999999887543
No 182
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=91.46 E-value=0.84 Score=44.31 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=56.9
Q ss_pred eeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCeeee---eeeeec--C-CCCCCeeeeEEEEec
Q 006070 6 LHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKARVG---RTRMLK--K-EQSNPRWYESFHIYC 77 (662)
Q Consensus 6 ~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~---kT~vi~--~-~t~nP~WNE~F~~~v 77 (662)
....+.|+|..+.+++..- .....|-||++.| +++... .|+... + -...+.|||...|++
T Consensus 6 v~~~~~i~v~~~h~~~~~~------------~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i 73 (171)
T cd04012 6 VTDLLSVTVSSLHRIPPTW------------VQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPI 73 (171)
T ss_pred ccccEEEEEEEeecCChHH------------hhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECcc
Confidence 3557899999999998731 1223678998877 555442 333211 1 123678999987766
Q ss_pred c--C--CCceEEEEEEecCCCC----------CceeEEEEeee
Q 006070 78 A--H--MASNIIFTVKDDNPIG----------ATLIGRAYVPV 106 (662)
Q Consensus 78 ~--~--~~~~L~~~V~D~d~~~----------~~~IG~~~ipl 106 (662)
. + ..+.|.|+|++....+ ...||.+.++|
T Consensus 74 ~i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~L 116 (171)
T cd04012 74 PVCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPL 116 (171)
T ss_pred chhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEee
Confidence 3 2 2368999999865432 25777777766
No 183
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=91.18 E-value=0.84 Score=42.75 Aligned_cols=66 Identities=18% Similarity=0.289 Sum_probs=43.0
Q ss_pred cEEEEEE--CCeeee----eeeeecCCC-CCCeeeeEEEEec--cC--CCceEEEEEEecCCCCC-----ceeEEEEeee
Q 006070 43 LYATIDL--EKARVG----RTRMLKKEQ-SNPRWYESFHIYC--AH--MASNIIFTVKDDNPIGA-----TLIGRAYVPV 106 (662)
Q Consensus 43 PYv~v~l--~~~~~~----kT~vi~~~t-~nP~WNE~F~~~v--~~--~~~~L~~~V~D~d~~~~-----~~IG~~~ipl 106 (662)
-||.+.| |++... .|+...- + .+|.|||.+.|++ .+ ..+.|.|+|++.+.... ..||.+.++|
T Consensus 4 ~~V~~~ly~g~~~L~~p~~~T~~~~~-~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~l 82 (142)
T PF00792_consen 4 LYVECQLYHGGEPLCNPVQSTSYVPF-SFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPL 82 (142)
T ss_dssp EEEEEEEEETTEESS-EEEE-S-EES-S-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEES
T ss_pred EEEEEEEEECCEEeecCeeecccccc-ccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEe
Confidence 4666665 554432 5665554 4 7999999877664 33 24689999998765543 5899998887
Q ss_pred eee
Q 006070 107 EEV 109 (662)
Q Consensus 107 ~~l 109 (662)
=+.
T Consensus 83 Fd~ 85 (142)
T PF00792_consen 83 FDY 85 (142)
T ss_dssp B-T
T ss_pred ECC
Confidence 443
No 184
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=91.14 E-value=2.4 Score=41.45 Aligned_cols=118 Identities=9% Similarity=0.098 Sum_probs=63.2
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCeee--eeeeeecCCCCCCeeeeEEEEecc--CC-
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKARV--GRTRMLKKEQSNPRWYESFHIYCA--HM- 80 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~--~kT~vi~~~t~nP~WNE~F~~~v~--~~- 80 (662)
..++|+|.++..+.. +......-||++.| ++... .+|+.... +.+|.|||-..|++. +.
T Consensus 10 ~~friki~~~~~~~~-------------~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~-~~~~~WnEwL~f~I~~~dLP 75 (178)
T cd08399 10 RKFRVKILGIDIPVL-------------PRNTDLTVFVEANIQHGQQVLCQRRTSPKPF-TEEVLWNTWLEFDIKIKDLP 75 (178)
T ss_pred CCEEEEEEeecccCc-------------CCCCceEEEEEEEEEECCeecccceeeccCC-CCCccccccEECccccccCC
Confidence 468899999974322 11112335676655 44322 15666666 778999998777653 22
Q ss_pred -CceEEEEEEecCCCC--CceeEEEEeeeeeecCCceEEEEE--eccCCCCCCCCCCCceEEEEEeec
Q 006070 81 -ASNIIFTVKDDNPIG--ATLIGRAYVPVEEVLGGEEVDKWV--EILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 81 -~~~L~~~V~D~d~~~--~~~IG~~~ipl~~l~~g~~~~~w~--~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
.+.|.|+|++...-+ ....|.. +.+.-......-.|. .|.+.++.- ..|...|.+.-.|
T Consensus 76 ~~arLc~ti~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~wvn~~LFD~~~~L--r~G~~~L~~W~~~ 139 (178)
T cd08399 76 KGALLNLQIYCGKAPALSSKKSAES--PSSESKGKHQLLYYVNLLLIDHRFLL--RTGEYVLHMWQIS 139 (178)
T ss_pred hhhEEEEEEEEEecCcccccccccc--cccccccccceEEEEEEEEEcCCCce--ecCCEEEEEecCC
Confidence 368999999863221 1222321 111111112223353 445555432 4577777776644
No 185
>PLN02866 phospholipase D
Probab=90.73 E-value=0.5 Score=57.05 Aligned_cols=62 Identities=19% Similarity=0.237 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEec
Q 006070 492 RSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVP 564 (662)
Q Consensus 492 ~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P 564 (662)
.....|++.||.+||++|||+.=.|-|..+.+.+. .-.++..|...|.+|+++| |+|+|++=
T Consensus 343 ~dyF~AL~eAIe~AKesI~I~~WwlsPEiYL~Rp~---------~D~~g~RL~~lL~rKAkrG--VkVrVLLy 404 (1068)
T PLN02866 343 HAAFEAIASAIENAKSEIFITGWWLCPELYLRRPF---------HDHESSRLDSLLEAKAKQG--VQIYILLY 404 (1068)
T ss_pred HHHHHHHHHHHHhcccEEEEEEccCCceEEEEecC---------CCchHHHHHHHHHHHHHCC--CEEEEEEE
Confidence 57889999999999999999765555444332210 0124568999999999999 99999754
No 186
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=90.07 E-value=1.2 Score=43.05 Aligned_cols=69 Identities=17% Similarity=0.323 Sum_probs=55.5
Q ss_pred CCcEEEEEECCeeeeeeeeecC-CCCCCeeeeEEEEeccCCCceEEEEEEecCCCCCceeEEEEeeeeee
Q 006070 41 SELYATIDLEKARVGRTRMLKK-EQSNPRWYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEEV 109 (662)
Q Consensus 41 ~DPYv~v~l~~~~~~kT~vi~~-~t~nP~WNE~F~~~v~~~~~~L~~~V~D~d~~~~~~IG~~~ipl~~l 109 (662)
..-|++|.++++.+.+|+...- ....=.+||.|.+.+...=+.|.+.||.....++..|+++.||+-..
T Consensus 37 ~~~~ikl~~N~k~V~~T~~~~l~~dF~v~f~~~f~v~i~~~Pesi~l~i~E~~~~~~~~la~v~vpvP~~ 106 (168)
T PF15625_consen 37 TRYYIKLFFNDKEVSRTRSRPLWSDFRVHFNEIFNVQITRWPESIKLEIYEKSGLSDRLLAEVFVPVPGS 106 (168)
T ss_pred eeEEEEEEECCEEEEeeeeEecCCCeEEeccCEEEEEEecCCCEEEEEEEEccCccceEEEEEEeeCCCC
Confidence 5679999999999888876643 24455678999999876558999999998887789999999998543
No 187
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=89.74 E-value=0.94 Score=44.44 Aligned_cols=53 Identities=15% Similarity=0.273 Sum_probs=31.2
Q ss_pred eeeeeecCCCCCCeeeeEEEEeccCC---CceEEEEEEecCCCC----CceeEEEEeeeee
Q 006070 55 GRTRMLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG----ATLIGRAYVPVEE 108 (662)
Q Consensus 55 ~kT~vi~~~t~nP~WNE~F~~~v~~~---~~~L~~~V~D~d~~~----~~~IG~~~ipl~~ 108 (662)
..|.|... +.+|.|||+|.+.++.. ...|.|++++...-. +..+|-+.+||-+
T Consensus 61 ~~S~v~yh-~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 61 YYSSVYYH-NKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp EE----TT--SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred EEEEEEec-CCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 47888877 89999999999887643 368999999865432 1577777777655
No 188
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=86.81 E-value=1.3 Score=43.61 Aligned_cols=51 Identities=24% Similarity=0.448 Sum_probs=35.0
Q ss_pred eeeeeecCCCCCCeeeeEEEEeccCC---CceEEEEEEecCCCC---CceeEEEEeee
Q 006070 55 GRTRMLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG---ATLIGRAYVPV 106 (662)
Q Consensus 55 ~kT~vi~~~t~nP~WNE~F~~~v~~~---~~~L~~~V~D~d~~~---~~~IG~~~ipl 106 (662)
.+|.|... ..+|.|||++.+.++-. ...|.|++++...-. ...+|-+.+||
T Consensus 55 ~~S~V~yH-~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL 111 (189)
T cd08695 55 YRSFVLYH-NNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPL 111 (189)
T ss_pred EEEEEEEc-CCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEee
Confidence 48888887 88999999999887642 368999887643321 13455444444
No 189
>KOG1327 consensus Copine [Signal transduction mechanisms]
Probab=85.90 E-value=1.7 Score=48.98 Aligned_cols=84 Identities=18% Similarity=0.317 Sum_probs=58.6
Q ss_pred eeeeeeeecCCCCCCeeeeEEEEecc-CCCceEEEEEEecCCC----C-CceeEEEEeeeeeecCCceEEEEEeccCCCC
Q 006070 53 RVGRTRMLKKEQSNPRWYESFHIYCA-HMASNIIFTVKDDNPI----G-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDR 126 (662)
Q Consensus 53 ~~~kT~vi~~~t~nP~WNE~F~~~v~-~~~~~L~~~V~D~d~~----~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~ 126 (662)
+++||.++.+ .+||.|-+.|.+.-. +-.+.|+|.++|-+.. . .+|+|++.-.+.++.+...... +|.-+.+
T Consensus 41 e~~rte~i~~-~~~p~f~~~~~l~y~fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~--~l~~~~~ 117 (529)
T KOG1327|consen 41 EVGRTEVIRN-VLNPFFTKKFLLQYRFEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTG--PLLLKPG 117 (529)
T ss_pred cccceeeeec-cCCccceeeechhheeeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhh--hhhcccC
Confidence 3469999999 999999999887542 2347899999987654 2 4899999999988876544433 3333333
Q ss_pred CCCCCCCceEEEEE
Q 006070 127 NPISSGSKIHVKLQ 140 (662)
Q Consensus 127 k~~k~~G~i~l~l~ 140 (662)
+. .+.|.|.+.+.
T Consensus 118 ~~-~~~g~iti~ae 130 (529)
T KOG1327|consen 118 KN-AGSGTITISAE 130 (529)
T ss_pred cc-CCcccEEEEee
Confidence 33 25567666654
No 190
>KOG0694 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=85.70 E-value=0.23 Score=56.94 Aligned_cols=97 Identities=14% Similarity=0.070 Sum_probs=63.9
Q ss_pred CCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceEEEEEEecCCCC-CceeEEEEeeeeeecC-CceEEE
Q 006070 40 GSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNIIFTVKDDNPIG-ATLIGRAYVPVEEVLG-GEEVDK 117 (662)
Q Consensus 40 ~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L~~~V~D~d~~~-~~~IG~~~ipl~~l~~-g~~~~~ 117 (662)
..|||+.|.+.....+.+.+.+. +.+|+|||+|.+.+. ....+.|.|+...... +.+.-.+++-.+++.. ....+.
T Consensus 27 al~~y~~v~vk~~~~~~~~~~~~-~~~~~~~~~F~~~v~-~~~~~~i~v~~~~~~~~~~~~a~~~~~~e~~k~~~~~~~~ 104 (694)
T KOG0694|consen 27 ALQPYLAVELKVKQGAENMTKVE-LRIPELRETFHVEVV-AGGAKNIIVLLKSPDPKALSEAQLSLQEESQKLLALEQRL 104 (694)
T ss_pred hhhhhheeccceeecccccCCCC-CCCchhhhheeeeee-cCCceEEEEEecCCcchhhHHHhHHHHHHHHHHHhhhhhh
Confidence 46999999998766667777777 999999999999964 4568899999876433 2333333333333332 223456
Q ss_pred EEeccCCCCCCCCCCCceEEEEEeecccc
Q 006070 118 WVEILDEDRNPISSGSKIHVKLQYFDVTK 146 (662)
Q Consensus 118 w~~L~~~~~k~~k~~G~i~l~l~f~~~~~ 146 (662)
|..+. ..|++...+.++-...
T Consensus 105 w~~~~--------~~g~~~~~~~~~~~~~ 125 (694)
T KOG0694|consen 105 WVLIE--------ELGTLLKPAALTGTLE 125 (694)
T ss_pred ccccc--------cccceeeeecccCcCC
Confidence 87752 3466767766654433
No 191
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=84.75 E-value=2.1 Score=42.30 Aligned_cols=52 Identities=17% Similarity=0.381 Sum_probs=36.4
Q ss_pred eeeeeeecCCCCCCeeeeEEEEeccCC---CceEEEEEEecCCCC--C---ceeEEEEeee
Q 006070 54 VGRTRMLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG--A---TLIGRAYVPV 106 (662)
Q Consensus 54 ~~kT~vi~~~t~nP~WNE~F~~~v~~~---~~~L~~~V~D~d~~~--~---~~IG~~~ipl 106 (662)
..||.|... ..+|.|||++.+.++-. ...|.|++++..... | ..+|-+.+||
T Consensus 54 e~~S~V~Yh-~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL 113 (196)
T cd08694 54 EYKSVIYYQ-VDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKL 113 (196)
T ss_pred eEEEEEEee-cCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEee
Confidence 358888776 88999999999887632 468999997753321 1 3566555555
No 192
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=84.12 E-value=2.8 Score=40.87 Aligned_cols=52 Identities=19% Similarity=0.317 Sum_probs=37.2
Q ss_pred eeeeecCCCCCCeeeeEEEEeccCC---CceEEEEEEecCCCC------CceeEEEEeeeee
Q 006070 56 RTRMLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDNPIG------ATLIGRAYVPVEE 108 (662)
Q Consensus 56 kT~vi~~~t~nP~WNE~F~~~v~~~---~~~L~~~V~D~d~~~------~~~IG~~~ipl~~ 108 (662)
-|+++.. ..+|.|||+|.+.++.. ...|.|++++-..-. ...+|-+.+||-+
T Consensus 55 ~~sv~~~-~k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYY-HKNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEc-CCCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 4666666 48999999999887543 468999999865322 2577777777653
No 193
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=81.75 E-value=9.2 Score=34.19 Aligned_cols=92 Identities=9% Similarity=0.132 Sum_probs=49.4
Q ss_pred EEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCC--------CceEEEEEEecCCCCC-ceeEEEEeeeeeecC--C
Q 006070 44 YATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHM--------ASNIIFTVKDDNPIGA-TLIGRAYVPVEEVLG--G 112 (662)
Q Consensus 44 Yv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~--------~~~L~~~V~D~d~~~~-~~IG~~~ipl~~l~~--g 112 (662)
||++.+-.-...-|.++. +.||..|-+-++.|.-. ...+.+++...- ..+ +.||.+.|++..+.. +
T Consensus 2 Fct~dFydfEtq~Tpvv~--G~~p~y~fts~y~V~~d~~fl~YLq~~~~~lELhqa~-g~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 2 FCTYDFYDFETQTTPVVR--GLNPFYDFTSQYKVTMDDLFLHYLQTGSLTLELHQAL-GSDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp EEEE-STT---EE---EE--SSS----EEEEEEE--SHHHHHHHHH--EEEEEEEE--SS-EEEEEEEEE--SHHHH--S
T ss_pred EEEEEeeceeeeccccee--CCCccceeEEEEEEEcCHHHHHHhhcCCEEEEEEeec-cCCeEEEEEEEeechhhhcCCC
Confidence 677777655555677775 89999998866555422 256888887644 223 899999999999883 4
Q ss_pred ceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 113 EEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 113 ~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
+.+..-..|.+.+|+ .-|.|.+.++.
T Consensus 79 ~~i~~~~~l~g~~~~---~~g~l~y~~rl 104 (107)
T PF11618_consen 79 ERIHGSATLVGVSGE---DFGTLEYWIRL 104 (107)
T ss_dssp --EEEEEEE-BSSS----TSEEEEEEEEE
T ss_pred ceEEEEEEEeccCCC---eEEEEEEEEEe
Confidence 467777888777666 34788777765
No 194
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=79.51 E-value=11 Score=33.09 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=43.3
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEE--CCeeee---eeeeecCCCCCCeeeeEEEEecc--CC--
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDL--EKARVG---RTRMLKKEQSNPRWYESFHIYCA--HM-- 80 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l--~~~~~~---kT~vi~~~t~nP~WNE~F~~~v~--~~-- 80 (662)
+.+++..+++..-. .....+|-||++.| +++... .|+.+.- ...+.|||-..|++. +.
T Consensus 13 ~~~~~~~~~~~~l~------------~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~-~~~~~Wnewl~f~i~i~~LPr 79 (100)
T smart00142 13 LVITIALIHGIPLN------------WSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPF-FPSVKWNEWLTFPIQISDLPR 79 (100)
T ss_pred eEEEEEEeeCCCcc------------cccCcceEEEEEEEEECCEEccCcEEecccCC-CCCcccceeEEccCchhcCCh
Confidence 55666666666531 01112588999877 554432 5555443 566999999877653 22
Q ss_pred CceEEEEEEec
Q 006070 81 ASNIIFTVKDD 91 (662)
Q Consensus 81 ~~~L~~~V~D~ 91 (662)
.+.|.|+|++.
T Consensus 80 ~a~L~~~i~~~ 90 (100)
T smart00142 80 EARLCITIYEV 90 (100)
T ss_pred hhEEEEEEEEe
Confidence 36899999984
No 195
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=78.62 E-value=6 Score=38.74 Aligned_cols=38 Identities=16% Similarity=0.270 Sum_probs=30.5
Q ss_pred eeeeeeecCCCCCCeeeeEEEEeccCC---CceEEEEEEecC
Q 006070 54 VGRTRMLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDN 92 (662)
Q Consensus 54 ~~kT~vi~~~t~nP~WNE~F~~~v~~~---~~~L~~~V~D~d 92 (662)
.+.|.|... +.+|.|+|+|.+.++-. ...|.|+.++-+
T Consensus 55 ~~~S~V~yH-nk~P~f~DEiKi~LP~~l~~~hHLlFtF~Hvs 95 (179)
T cd08696 55 EAYTAVTYH-NKSPDFYDEIKIKLPADLTDNHHLLFTFYHIS 95 (179)
T ss_pred eEEEEEEEe-CCCCcccceEEEEcCCCCCCCeEEEEEEEEee
Confidence 458888888 99999999999887643 358999998843
No 196
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=77.13 E-value=17 Score=38.06 Aligned_cols=51 Identities=20% Similarity=0.337 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHH-hcCCceEEEEEecC
Q 006070 491 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKI-EAGERFTVYIVVPM 565 (662)
Q Consensus 491 e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~-~~g~~~~V~Iv~P~ 565 (662)
..+|.+..-+.|++|++-|=|---=|.-. +|..-|..|. +|+ |-|||++=.
T Consensus 132 ~p~IKE~vR~~I~~A~kVIAIVMD~FTD~----------------------dIf~DLleAa~kR~--VpVYiLLD~ 183 (284)
T PF07894_consen 132 QPHIKEVVRRMIQQAQKVIAIVMDVFTDV----------------------DIFCDLLEAANKRG--VPVYILLDE 183 (284)
T ss_pred CCCHHHHHHHHHHHhcceeEEEeeccccH----------------------HHHHHHHHHHHhcC--CcEEEEech
Confidence 46799999999999999999987777421 5777788887 888 999999974
No 197
>PF11495 Regulator_TrmB: Archaeal transcriptional regulator TrmB; InterPro: IPR021586 TrmB is an alpha-glucoside sensing transcriptional regulator. The protein is the transcriptional repressor for gene cluster encoding trehalose/maltose ABC transporter in T.litoralis and P.furiosus []. TrmB has lost its DNA binding domain but retained its sugar recognition site. A nonreducing glucosyl residue is shared by all substrates bound to TrmB which suggests that its a common recognition motif []. ; PDB: 3QPH_A 2F5T_X.
Probab=76.09 E-value=6.6 Score=39.99 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=40.1
Q ss_pred hhHHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecC
Q 006070 491 DRSIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPM 565 (662)
Q Consensus 491 e~sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~ 565 (662)
..+|.+-...+|++|++.|||..+. . .-.++...|.+|.++| ++|.+++..
T Consensus 8 ~~~I~~~i~elI~~Ae~eI~is~~~----~------------------~l~~l~~~L~~a~~rG--V~V~li~~~ 58 (233)
T PF11495_consen 8 RETILERIRELIENAESEIYISIPP----E------------------FLEELRDELEEAVDRG--VKVKLIVFG 58 (233)
T ss_dssp HHHHHHHHHHHHHC-SSEEEEEE-G----G------------------GHHHHHHHHHHHHHTT---EEEEEESS
T ss_pred HHHHHHHHHHHHHHhheEEEEEcCH----H------------------HHHHHHHHHHHHHHCC--CEEEEEEeC
Confidence 4689999999999999999998542 1 1137889999999999 999999887
No 198
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=75.37 E-value=3.6 Score=44.48 Aligned_cols=129 Identities=16% Similarity=0.171 Sum_probs=75.2
Q ss_pred cchHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhc--CCeEEEEEecCc-ccccccccc
Q 006070 202 HRCWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASE--GVRVCMLVWDDR-TSVSLLKKD 278 (662)
Q Consensus 202 ~~~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~--GV~VrvLlwd~~-~s~~~~~~~ 278 (662)
.+.|+.+...|.+||+.|+++. +||-. ....|.+.|..+.+. -.+|.||+ |.. |+.......
T Consensus 38 ~~fy~~lk~~I~~aq~Ri~las------LYlG~--------~E~elv~cl~~aL~~~~~L~v~iLl-D~~rgtr~~~~~~ 102 (469)
T KOG3964|consen 38 PEFYQRLKKLIKKAQRRIFLAS------LYLGK--------LERELVDCLSNALEKNPSLKVSILL-DFLRGTRELPNSC 102 (469)
T ss_pred HHHHHHHHHHHHHhhheeeeee------eccch--------hHHHHHHHHHHHhccCCCcEEEeeh-hhhhhcccCcccc
Confidence 4578999999999999999997 34432 235788888777765 79999997 874 332221110
Q ss_pred CccCCChHHHHhhhcCCCcEEEecCCCCCCCCCccccc----ccccccCCccceEEEcCCCCCCCccccceeEEeccccC
Q 006070 279 GLMATHDEETEKFFQGTDVHCILCPRNPDDGGSFIQDI----QISAMFTHHQKIVVVDSPMPNGDPERRRIMSFVGGIDL 354 (662)
Q Consensus 279 ~~~~~~~~~~~~~l~~~~v~~~~~~r~p~~~~~~~~~~----~~~~~~~hHqK~vVID~~~~~~~~~~~~~vafvGG~nl 354 (662)
. | +-.-...+.+. ..|++.++.. |.. ..+.+.. ..-.....|-|+.-+|.+ ..+-|.|+
T Consensus 103 s-~-llp~~l~kkf~-e~vd~~lyht-p~L-rg~~k~Lvp~rfneg~GlQhmKIy~fdde------------viiSGanl 165 (469)
T KOG3964|consen 103 S-A-LLPVWLGKKFP-ERVDESLYHT-PFL-RGLSKSLVPARFNEGLGLQHMKIYGFDDE------------VIISGANL 165 (469)
T ss_pred h-h-hchHHHhhhhh-hhhceeeecC-hhh-hhhhhhcCchhhccccchhhhhhhcccHh------------hhcccccc
Confidence 0 0 00001111111 2455555521 110 0010100 111245789999999996 36789999
Q ss_pred cCccccCC
Q 006070 355 CDGRYDTP 362 (662)
Q Consensus 355 ~~~r~dt~ 362 (662)
+.+|+.+.
T Consensus 166 s~dyfTNR 173 (469)
T KOG3964|consen 166 SNDYFTNR 173 (469)
T ss_pred hhhhhccc
Confidence 99876543
No 199
>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]
Probab=75.15 E-value=1.3 Score=52.16 Aligned_cols=116 Identities=16% Similarity=0.298 Sum_probs=72.7
Q ss_pred ceeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECC----eeeeeeeeecCCCCCCeeeeEEEEeccCC
Q 006070 5 LLHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEK----ARVGRTRMLKKEQSNPRWYESFHIYCAHM 80 (662)
Q Consensus 5 ~~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~----~~~~kT~vi~~~t~nP~WNE~F~~~v~~~ 80 (662)
++.|.|++.+.+|..|+.. ..-||+..++. ...++|+++.+ |.-|.||+.|++++...
T Consensus 756 l~ygflh~~vhsat~lkqs-----------------~~lY~Td~v~e~~~~~s~~st~~iad-T~~~~~npe~hv~~~~s 817 (1112)
T KOG4269|consen 756 LLYGFLHVIVHSATGLKQS-----------------RNLYCTDEVDEFGYFVSKASTRVIAD-TAEPQWNPEKHVPVIES 817 (1112)
T ss_pred ccccceeeeeccccccccc-----------------cceeeehhhhhhccccccccceeeec-ccCCCCChhcccchhhc
Confidence 6789999999999999872 35688887743 33469999999 99999999999998532
Q ss_pred CceEEEEEEecCC----------CC-CceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEeecccc
Q 006070 81 ASNIIFTVKDDNP----------IG-ATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFDVTK 146 (662)
Q Consensus 81 ~~~L~~~V~D~d~----------~~-~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~~~~ 146 (662)
+.+.+..++.+. +. +...|+..+-+.-... ....|+.=... . -...+...|.|.+...
T Consensus 818 -qS~r~~~~ek~~~~~k~~~~~~~~~~~~~~~~~~~l~~~~~--~d~d~~t~v~~-~----n~~~ve~~v~~ssss~ 886 (1112)
T KOG4269|consen 818 -QSSRLEKTEKSTPVEKLIDSHSQNSQNEEKRSRMKLDPQPH--HDADWYTQVID-M----NGIVVETSVKFSSSST 886 (1112)
T ss_pred -cccchhhhcccchHHHhhhccchhhcccccccccccCcccc--ccccCccChhh-h----cCcceeeeEEeccccc
Confidence 445555544432 11 3455555544432111 11224432111 0 2346677888877554
No 200
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=75.14 E-value=3.2 Score=45.74 Aligned_cols=44 Identities=25% Similarity=0.505 Sum_probs=34.6
Q ss_pred eeEEEEeeeee-ecCCceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 98 LIGRAYVPVEE-VLGGEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 98 ~IG~~~ipl~~-l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
++|.+.||+.. +..|+..+.|||+.+...+.. +.|.+ |+++|..
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~~~-~~~~l-lk~~~~~ 45 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNKSV-GEGLI-IKVSSEE 45 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCCCc-CcceE-EEEEeee
Confidence 48999999999 557788999999988655543 56777 7888753
No 201
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=73.67 E-value=10 Score=37.36 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=31.2
Q ss_pred eeeeeeeecCCCCCCeeeeEEEEeccCC---CceEEEEEEecC
Q 006070 53 RVGRTRMLKKEQSNPRWYESFHIYCAHM---ASNIIFTVKDDN 92 (662)
Q Consensus 53 ~~~kT~vi~~~t~nP~WNE~F~~~v~~~---~~~L~~~V~D~d 92 (662)
..+.|.|... +.+|.|+|++.+.++-. ...|.|+.++-.
T Consensus 56 ~~~~s~V~yh-~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvs 97 (185)
T cd08697 56 TSAYAAVLHH-NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVS 97 (185)
T ss_pred eEEEEEEEEc-CCCCccceeEEEecCCcCCCCeeEEEEEEeec
Confidence 3468999988 89999999999877532 368999999854
No 202
>PF13090 PP_kinase_C: Polyphosphate kinase C-terminal domain; PDB: 2O8R_A 1XDP_A 1XDO_B.
Probab=64.06 E-value=11 Score=40.48 Aligned_cols=44 Identities=18% Similarity=0.336 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q 006070 542 ELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM 604 (662)
Q Consensus 542 ~l~~~i~~A~~~g~~~~V~Iv~P~~peG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~ 604 (662)
.|+.+|.+|++.| =+|.+++=+..-.+-+ .-+ +|+ ++|.++|+.
T Consensus 51 ~iv~aLi~AA~nG--K~Vtv~vELkARFDEe-~Ni----~Wa------------~~Le~aGv~ 94 (352)
T PF13090_consen 51 PIVNALIEAAENG--KQVTVLVELKARFDEE-NNI----HWA------------KRLEEAGVH 94 (352)
T ss_dssp HHHHHHHHHHHTT---EEEEEESTTSSSTTC-CCC----CCC------------HHHHHCT-E
T ss_pred HHHHHHHHHHHcC--CEEEEEEEEeccccHH-HHh----HHH------------hhHHhcCeE
Confidence 6999999999999 5667777776522222 222 244 679999985
No 203
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=64.01 E-value=57 Score=35.94 Aligned_cols=113 Identities=17% Similarity=0.306 Sum_probs=66.5
Q ss_pred CCCCcEEEEEECCeeeeeeeeec---CCCCCC-eee---eEEEEeccC------C------CceEEEEEEecCC-----C
Q 006070 39 GGSELYATIDLEKARVGRTRMLK---KEQSNP-RWY---ESFHIYCAH------M------ASNIIFTVKDDNP-----I 94 (662)
Q Consensus 39 g~~DPYv~v~l~~~~~~kT~vi~---~~t~nP-~WN---E~F~~~v~~------~------~~~L~~~V~D~d~-----~ 94 (662)
.++-.||+|+|.+-.. +|..+- ..+.+| .=+ -.|++.-.+ . ...|+|.||-... +
T Consensus 34 ssspCfC~IrL~~fP~-Qta~vPLi~~~~~~~p~~~~~Aa~F~Ld~s~l~~l~~~~~f~~~~~~L~i~VY~Gr~G~tCGv 112 (460)
T PF06219_consen 34 SSSPCFCEIRLKGFPS-QTAPVPLISSSEPEPPDSHSLAASFHLDKSDLRRLLAKPCFYSPRPCLEISVYTGRRGSTCGV 112 (460)
T ss_pred CCCCeEEEEecCCCCc-cceeeeeccCCCCCCCCcCCcceEEecCHHHHHHHhCCCccccCCceEEEEEEECCCCCcccc
Confidence 3467799999987554 344332 112222 112 237664322 1 1469999997432 2
Q ss_pred --CCceeEEEEeeeeeec--CCce---EEEEEeccCCCC-CCCCCCCceEEEEEeeccccchhhhhcccC
Q 006070 95 --GATLIGRAYVPVEEVL--GGEE---VDKWVEILDEDR-NPISSGSKIHVKLQYFDVTKDRSWARGIRS 156 (662)
Q Consensus 95 --~~~~IG~~~ipl~~l~--~g~~---~~~w~~L~~~~~-k~~k~~G~i~l~l~f~~~~~~~~W~~gI~~ 156 (662)
+.++||++.|||. +. .++. .+.|+.|=..+. +..+...+|||.++-.| |+-|..+.++
T Consensus 113 ~~~~klLG~v~vpld-l~~ae~kp~v~hnGWi~iGk~~~~~~~~~~aeLHl~Vr~Ep---DPRfVFQFdg 178 (460)
T PF06219_consen 113 GNSGKLLGKVRVPLD-LKWAEGKPVVFHNGWISIGKNKQGSGKSPSAELHLVVRAEP---DPRFVFQFDG 178 (460)
T ss_pred cccceEEEEEEEEec-cccccCCeeEEEccceecCCCCCCCCCCCcceEEEEEeccC---CCeeEEEcCC
Confidence 2489999999996 32 2332 367999943221 11124689999999755 7767766544
No 204
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=50.24 E-value=96 Score=33.30 Aligned_cols=93 Identities=12% Similarity=0.195 Sum_probs=59.6
Q ss_pred CcEEEEEECCeeeeeeeeecCCCCCCe-eeeEEEEeccCCCceEEEEEEecCCCCCceeEEEEeeeee-ecCC-ceEEEE
Q 006070 42 ELYATIDLEKARVGRTRMLKKEQSNPR-WYESFHIYCAHMASNIIFTVKDDNPIGATLIGRAYVPVEE-VLGG-EEVDKW 118 (662)
Q Consensus 42 DPYv~v~l~~~~~~kT~vi~~~t~nP~-WNE~F~~~v~~~~~~L~~~V~D~d~~~~~~IG~~~ipl~~-l~~g-~~~~~w 118 (662)
.-|+.+..|+..+ +|..+.-+-.+-+ =.|.-.+.+.--...|.+.|+-....+..-||.+.|.+.+ +..+ =+...|
T Consensus 75 hiyIef~~Gr~d~-TT~~IpTsKK~RI~IqqRV~IkIRQcDnTLkI~lfKKkLvkk~hIgdI~InIn~dIIdk~FPKnkW 153 (508)
T PTZ00447 75 HIYIIFSTDKYDF-TTDEIPTNKKNRIHIDQRVDIKIRQCDETLRVDLFTTKLTKKVHIGQIKIDINASVISKSFPKNEW 153 (508)
T ss_pred eEEEEEEcCceEE-EccccccCcCceEEEeeeeeeeeeecCceEEEEEEeccccceeEEEEEEecccHHHHhccCCccce
Confidence 5688999887654 5645443233333 1233444443333689999998888888999999999843 4443 356889
Q ss_pred EeccCCCCCCCCCCCceEEEE
Q 006070 119 VEILDEDRNPISSGSKIHVKL 139 (662)
Q Consensus 119 ~~L~~~~~k~~k~~G~i~l~l 139 (662)
|-+. ++|+. .++|.++.
T Consensus 154 y~c~-kDGq~---~cRIqLSF 170 (508)
T PTZ00447 154 FVCF-KDGQE---ICKVQMSF 170 (508)
T ss_pred EEEe-cCCce---eeeEEEEe
Confidence 9994 56653 35554443
No 205
>COG3139 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.96 E-value=22 Score=29.87 Aligned_cols=39 Identities=28% Similarity=0.714 Sum_probs=30.8
Q ss_pred ccchHHHHHHHHHHHhcCCceEEEEEecCCCCCCC-----CchhHHHHHHHHHH
Q 006070 537 HLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFP-----ESGSVQAILDWQRR 585 (662)
Q Consensus 537 n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~peG~~-----~~~~v~~il~~~~~ 585 (662)
|-|-.|+..+|..|+.-| .||+|.. ....+|++|-||.|
T Consensus 8 n~mtPEiYQrL~~AvElG----------KWPdG~~LtqeQke~clQaVmlwqar 51 (90)
T COG3139 8 NSMTPEIYQRLSTAVELG----------KWPDGVALTQEQKENCLQAVMLWQAR 51 (90)
T ss_pred HhcCHHHHHHHHHHHHhc----------CCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 445568999999998877 6999975 23578899999986
No 206
>PF07023 DUF1315: Protein of unknown function (DUF1315); InterPro: IPR009749 This family consists of several bacterial proteins of around 90 residues in length. The function of this family is unknown.
Probab=49.29 E-value=25 Score=30.53 Aligned_cols=37 Identities=27% Similarity=0.593 Sum_probs=29.5
Q ss_pred chHHHHHHHHHHHhcCCceEEEEEecCCCCCCC-----CchhHHHHHHHHHH
Q 006070 539 IPKELSLKIVSKIEAGERFTVYIVVPMWPEGFP-----ESGSVQAILDWQRR 585 (662)
Q Consensus 539 i~~~l~~~i~~A~~~g~~~~V~Iv~P~~peG~~-----~~~~v~~il~~~~~ 585 (662)
+..++..+|..|+.-| .||+|.. ....+|++|-|+.+
T Consensus 8 mtPevY~rL~~AVElG----------KWpDG~~LT~eQre~~mQaVm~yq~~ 49 (93)
T PF07023_consen 8 MTPEVYERLKQAVELG----------KWPDGRALTPEQRESCMQAVMLYQAR 49 (93)
T ss_pred CCHHHHHHHHHHHHhC----------cCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4558999999998888 7999975 23578888888875
No 207
>KOG3964 consensus Phosphatidylglycerolphosphate synthase [Lipid transport and metabolism]
Probab=48.28 E-value=31 Score=37.67 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCCC
Q 006070 493 SIQDAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWP 567 (662)
Q Consensus 493 sI~~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~p 567 (662)
..++...+.|.+||+.|+|.+-|.-..+ .||++-|..|.......+|-|++-..-
T Consensus 39 ~fy~~lk~~I~~aq~Ri~lasLYlG~~E--------------------~elv~cl~~aL~~~~~L~v~iLlD~~r 93 (469)
T KOG3964|consen 39 EFYQRLKKLIKKAQRRIFLASLYLGKLE--------------------RELVDCLSNALEKNPSLKVSILLDFLR 93 (469)
T ss_pred HHHHHHHHHHHHhhheeeeeeeccchhH--------------------HHHHHHHHHHhccCCCcEEEeehhhhh
Confidence 5788899999999999999999986533 399999999999999999999987543
No 208
>COG0855 Ppk Polyphosphate kinase [Inorganic ion transport and metabolism]
Probab=45.00 E-value=45 Score=38.71 Aligned_cols=44 Identities=18% Similarity=0.378 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhcCCceEEEEEecCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q 006070 542 ELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGSVQAILDWQRRTMDMMYKDVVQALRAKGIM 604 (662)
Q Consensus 542 ~l~~~i~~A~~~g~~~~V~Iv~P~~peG~~~~~~v~~il~~~~~ti~~~~~si~~~L~~~gi~ 604 (662)
.|+++|+.|+++|+ +|.+|+=+..-.+ +..- ++|+ ++|.++|+.
T Consensus 385 pIV~ALi~AA~nGK--qVtvlVELkARFD-EE~N----I~WA------------k~LE~AGvh 428 (696)
T COG0855 385 PIVRALIDAAENGK--QVTVLVELKARFD-EEAN----IHWA------------KRLERAGVH 428 (696)
T ss_pred HHHHHHHHHHHcCC--eEEEEEEEhhhcC-hhhh----hHHH------------HHHHhCCcE
Confidence 69999999999995 5556666554111 2222 3565 569999985
No 209
>COG1489 SfsA DNA-binding protein, stimulates sugar fermentation [General function prediction only]
Probab=43.58 E-value=76 Score=32.37 Aligned_cols=23 Identities=30% Similarity=0.330 Sum_probs=20.3
Q ss_pred CcchHHHHHHHHhhcCCeEEEEE
Q 006070 243 GDIMLGELLKKKASEGVRVCMLV 265 (662)
Q Consensus 243 ~~~~l~~lL~~kA~~GV~VrvLl 265 (662)
.+..+.++|.+++++||+|...-
T Consensus 190 ~Dp~fa~~l~~A~~~GVev~~~~ 212 (235)
T COG1489 190 IDPKFAELLREAIKAGVEVLAYR 212 (235)
T ss_pred cCHHHHHHHHHHHHcCCEEEEEE
Confidence 67799999999999999988763
No 210
>KOG3543 consensus Ca2+-dependent activator protein [Signal transduction mechanisms]
Probab=40.91 E-value=1.5e+02 Score=34.36 Aligned_cols=117 Identities=16% Similarity=0.284 Sum_probs=72.9
Q ss_pred ceeEEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCceE
Q 006070 5 LLHGTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMASNI 84 (662)
Q Consensus 5 ~~~G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~~L 84 (662)
.|.=.++|.|.|..+|++. ....=-||++.+++.+. +|--.. ..-|.|...=.|...++-..+
T Consensus 338 ~la~smevvvmevqglksv--------------apnrivyctmevegekl-qtdqae--askp~wgtqgdfstthplpvv 400 (1218)
T KOG3543|consen 338 SLALSMEVVVMEVQGLKSV--------------APNRIVYCTMEVEGEKL-QTDQAE--ASKPKWGTQGDFSTTHPLPVV 400 (1218)
T ss_pred eEEeeeeEEEeeecccccc--------------CCCeeEEEEEEeccccc-ccchhh--hcCCCCCcCCCcccCCCCcee
Confidence 4556799999999999862 01123699999998765 565442 567999988666665655566
Q ss_pred EEEEEecCC----CCCceeEEEEeeeeeecCCceEEEEEeccCCCCCCCCCCCceEEEEEe
Q 006070 85 IFTVKDDNP----IGATLIGRAYVPVEEVLGGEEVDKWVEILDEDRNPISSGSKIHVKLQY 141 (662)
Q Consensus 85 ~~~V~D~d~----~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f 141 (662)
.+.++-+.+ +.|+-+|++.|--. ........|+.+.-++..+ ...-+|++.++.
T Consensus 401 kvklftestgvlaledkelgrvil~pt--pns~ks~ewh~mtvpknsq-dqdlkiklavrm 458 (1218)
T KOG3543|consen 401 KVKLFTESTGVLALEDKELGRVILQPT--PNSAKSPEWHTMTVPKNSQ-DQDLKIKLAVRM 458 (1218)
T ss_pred EEEEEeecceeEEeechhhCeEEEecC--CCCcCCccceeeecCCCCc-CccceEEEEEec
Confidence 777765543 23688999887432 1122335687774333222 133455555554
No 211
>KOG2419 consensus Phosphatidylserine decarboxylase [Lipid transport and metabolism]
Probab=40.59 E-value=2.5 Score=48.09 Aligned_cols=77 Identities=10% Similarity=0.001 Sum_probs=47.2
Q ss_pred EEEEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCC--ceEE
Q 006070 8 GTLHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMA--SNII 85 (662)
Q Consensus 8 G~L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~--~~L~ 85 (662)
|..-+++|.|.++++ +.+-+.+ .-+.+|++.+.++++. .||..-.. +.+|+|||. .+.+.+.. ..|.
T Consensus 280 gi~ll~lI~a~~~~~--i~~~~~~------~f~~~~~~itsf~~~~-frt~~~~~-~e~piyNe~-~~E~~~Fqsn~~l~ 348 (975)
T KOG2419|consen 280 GIALLTLIGAEMKYD--IVEDVAK------LFKDKWLAITSFGEQT-FRTEISDD-TEKPIYNED-EREDSDFQSNRYLG 348 (975)
T ss_pred hhHHHHHhhhhcccc--hhhhhhh------ccCCCchheeecchhh-hhhhhhcc-ccccccccc-ccccccchhhHHHh
Confidence 334445666666654 1111111 2246899999999875 58998888 999999997 44443322 3455
Q ss_pred EEEEecCCCC
Q 006070 86 FTVKDDNPIG 95 (662)
Q Consensus 86 ~~V~D~d~~~ 95 (662)
..|.+++.+.
T Consensus 349 ~kiv~~~~~~ 358 (975)
T KOG2419|consen 349 NKIVGYCELD 358 (975)
T ss_pred hhcccccccc
Confidence 5555555544
No 212
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=34.14 E-value=61 Score=33.52 Aligned_cols=77 Identities=18% Similarity=0.304 Sum_probs=51.0
Q ss_pred HHHHHHHHhccceEEEeeccccccccccccCCCCCccccccccchHHHHHHHHHHHhcCCceEEEEEecCCCCCCCCchh
Q 006070 496 DAYIHAIRRAKNFIYIENQYFLGSSFAWSADGIKPEEINALHLIPKELSLKIVSKIEAGERFTVYIVVPMWPEGFPESGS 575 (662)
Q Consensus 496 ~ay~~aI~~A~~~IYIEnqYFi~~~~~w~~~~~~~~~~~~~n~i~~~l~~~i~~A~~~g~~~~V~Iv~P~~peG~~~~~~ 575 (662)
+.++..++.|++-|=--.|=||.+.. ....|--.+.....|..|++++.+|+|++- - |.|+...
T Consensus 107 ~~F~~~~~~sR~~IA~l~~~Fi~dg~-----------~ILtHg~SRvVl~~L~~Aa~~~~~F~V~vT-E----srPd~sG 170 (313)
T KOG1466|consen 107 ELFIERARKSRQKIAMLAQDFITDGC-----------TILTHGYSRVVLEVLLTAAQNKKRFRVYVT-E----SRPDGSG 170 (313)
T ss_pred HHHHHHHHHHHHHHHHHhhhHhhCCC-----------EEEEcchhHHHHHHHHHHHhcCceEEEEEe-c----CCCCCch
Confidence 34566677777777667777776531 122344456788889999999999999763 2 3344433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q 006070 576 VQAILDWQRRTMDMMYKDVVQALRAKGIM 604 (662)
Q Consensus 576 v~~il~~~~~ti~~~~~si~~~L~~~gi~ 604 (662)
. -.++.|+++||.
T Consensus 171 ~----------------lm~~~L~~~~IP 183 (313)
T KOG1466|consen 171 K----------------LMAKELKKLGIP 183 (313)
T ss_pred h----------------HHHHHHHhcCCC
Confidence 2 257888888874
No 213
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=31.61 E-value=4.3e+02 Score=25.08 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCCcEEEEEEC---Cee---eeeeeeecC-CCCCCeeeeEEEEec--cC--CCceEEEEEEecCCCCC--ceeEEEEeee
Q 006070 40 GSELYATIDLE---KAR---VGRTRMLKK-EQSNPRWYESFHIYC--AH--MASNIIFTVKDDNPIGA--TLIGRAYVPV 106 (662)
Q Consensus 40 ~~DPYv~v~l~---~~~---~~kT~vi~~-~t~nP~WNE~F~~~v--~~--~~~~L~~~V~D~d~~~~--~~IG~~~ipl 106 (662)
-.|||++|++- +.. ...|.+-.. ++..=.||.+.+++. .+ ..+.+.|+++++..-.. ...+.+.+++
T Consensus 30 ~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lqtple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~ 109 (147)
T PF14186_consen 30 YIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQTPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMEL 109 (147)
T ss_dssp -EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-SS-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEG
T ss_pred ccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEcCCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEh
Confidence 36999999992 221 224555421 134445666665543 22 24679999999766553 6789999999
Q ss_pred eeecCCc
Q 006070 107 EEVLGGE 113 (662)
Q Consensus 107 ~~l~~g~ 113 (662)
+++..|.
T Consensus 110 dei~~g~ 116 (147)
T PF14186_consen 110 DEIKPGP 116 (147)
T ss_dssp GG--SEE
T ss_pred hhccCCc
Confidence 9999883
No 214
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=30.98 E-value=91 Score=27.87 Aligned_cols=58 Identities=21% Similarity=0.344 Sum_probs=40.1
Q ss_pred eEEEEEEecCC---CC-CceeEEEEeeeeeecC--------------CceEEEEEeccCCCCCCCCCCCceEEEEEeec
Q 006070 83 NIIFTVKDDNP---IG-ATLIGRAYVPVEEVLG--------------GEEVDKWVEILDEDRNPISSGSKIHVKLQYFD 143 (662)
Q Consensus 83 ~L~~~V~D~d~---~~-~~~IG~~~ipl~~l~~--------------g~~~~~w~~L~~~~~k~~k~~G~i~l~l~f~~ 143 (662)
.|.+.|++--. .. ..+||.+.|++.+... ......-|+|.++.+++ -|+|.+.++.+.
T Consensus 30 pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~~~---~G~I~l~iRLsc 105 (112)
T PF14924_consen 30 PLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENGNP---VGEISLYIRLSC 105 (112)
T ss_pred ceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCCce---eeeEEEEEEEec
Confidence 56666665322 23 4899999999877651 12456679999887774 488988888754
No 215
>TIGR00230 sfsA sugar fermentation stimulation protein. probable regulatory factor involved in maltose metabolism contains a putative DNA binding domain. Isolated as a gene which enabled E.coli strain MK2001 to use maltose.
Probab=25.55 E-value=1.7e+02 Score=29.96 Aligned_cols=55 Identities=15% Similarity=0.156 Sum_probs=33.6
Q ss_pred HHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEE
Q 006070 205 WEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLV 265 (662)
Q Consensus 205 ~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLl 265 (662)
.+.|.++.++ . .-+|..-...++..-+++.. ..+..+.++|.++++.||+|.-+-
T Consensus 159 L~eL~~l~~~-~-ra~vlF~vqr~d~~~f~p~~----~~Dp~fa~~l~~A~~~GVev~a~~ 213 (232)
T TIGR00230 159 LRELEEILKE-S-RAVVLFVVALPSVRAFSPNR----EGDEEYYRLLRRAHEAGVEVRPYQ 213 (232)
T ss_pred HHHHHHHHHh-C-CEEEEEEEeCCCCCEEeeCc----ccCHHHHHHHHHHHHCCCEEEEEE
Confidence 4566666666 3 33333222333333333222 256799999999999999998764
No 216
>PF03749 SfsA: Sugar fermentation stimulation protein; InterPro: IPR005224 The sugar fermentation stimulation protein is a probable regulatory factor involved in maltose metabolism. It contains a putative DNA-binding domain, and was isolated as a gene which enabled Escherichia coli W3110 (strain MK2001) to use maltose [].
Probab=25.12 E-value=2.3e+02 Score=28.61 Aligned_cols=23 Identities=30% Similarity=0.294 Sum_probs=20.3
Q ss_pred CcchHHHHHHHHhhcCCeEEEEE
Q 006070 243 GDIMLGELLKKKASEGVRVCMLV 265 (662)
Q Consensus 243 ~~~~l~~lL~~kA~~GV~VrvLl 265 (662)
.+..+.++|.+++++||+|.-+-
T Consensus 179 ~Dp~fa~~l~~A~~~GV~v~a~~ 201 (215)
T PF03749_consen 179 IDPEFAEALREAAEAGVEVLAYR 201 (215)
T ss_pred cCHHHHHHHHHHHHCCCEEEEEE
Confidence 56799999999999999998764
No 217
>PF13289 SIR2_2: SIR2-like domain
Probab=24.37 E-value=2.9e+02 Score=24.83 Aligned_cols=64 Identities=19% Similarity=0.458 Sum_probs=39.0
Q ss_pred hHHHHHHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhc-C---CeEEEEEecCccccccccccC
Q 006070 204 CWEDIFDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASE-G---VRVCMLVWDDRTSVSLLKKDG 279 (662)
Q Consensus 204 ~~~~l~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~-G---V~VrvLlwd~~~s~~~~~~~~ 279 (662)
.|...+.++..++..|+| ||++. | ..+..+|....+. | -++++++.+..
T Consensus 75 ~~~~~l~~~l~~~~~lfi-Gys~~-------D---------~~i~~~l~~~~~~~~~~~~~~~~v~~~~~---------- 127 (143)
T PF13289_consen 75 WFPNFLRSLLRSKTLLFI-GYSFN-------D---------PDIRQLLRSALENSGKSRPRHYIVIPDPD---------- 127 (143)
T ss_pred HHHHHHHHHHcCCCEEEE-EECCC-------C---------HHHHHHHHHHHHhccCCCccEEEEEcCCc----------
Confidence 455666777778877777 99873 2 2466666555543 2 25777763332
Q ss_pred ccCCChHHHHhhhcCCCcEE
Q 006070 280 LMATHDEETEKFFQGTDVHC 299 (662)
Q Consensus 280 ~~~~~~~~~~~~l~~~~v~~ 299 (662)
++....++++.||++
T Consensus 128 -----~~~~~~~~~~~~i~~ 142 (143)
T PF13289_consen 128 -----DENEREFLEKYGIEV 142 (143)
T ss_pred -----hHHHHHHHHHcCCEE
Confidence 134456777778875
No 218
>COG2044 Predicted peroxiredoxins [General function prediction only]
Probab=23.77 E-value=1.7e+02 Score=26.78 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHcC----CcEEEEEEEeeeceeEEecCCCCC-C-CCCcchHHHHHHHHhhcCCeEEEE
Q 006070 202 HRCWEDIFDAITNA----RHMIYITGWSVYTEISLVRDSRRP-K-PGGDIMLGELLKKKASEGVRVCML 264 (662)
Q Consensus 202 ~~~~~~l~~aI~~A----k~~I~I~~w~~~p~~~L~r~~~~~-~-~~~~~~l~~lL~~kA~~GV~VrvL 264 (662)
++|+..++-|+..| .-+||++. -..+|++.+... . .....+|.++.+.+.+.||+.++=
T Consensus 17 ~r~ya~f~~A~~a~smg~dV~iF~t~----dG~~l~~K~~~ekik~~~~~~l~~~~~~a~e~GVk~yvC 81 (120)
T COG2044 17 ERAYAPFVMATAAASMGYDVTIFFTM----DGVTLVKKKVAEKIKHPNFPPLEELIKQAIEAGVKIYVC 81 (120)
T ss_pred HHHHhHHHHHHHHHhCCCceEEEEEe----ccceeeeecchhhhcCCCCCCHHHHHHHHHHcCCEEEEE
Confidence 46666666666544 45555543 445666533211 1 124578999999999999888763
No 219
>KOG3698 consensus Hyaluronoglucosaminidase [Posttranslational modification, protein turnover, chaperones]
Probab=21.54 E-value=40 Score=38.36 Aligned_cols=92 Identities=17% Similarity=0.207 Sum_probs=54.1
Q ss_pred CcccCCcchHHHH---------HHHHHcCCcEEEEEEEeeeceeEEecCCCCCCCCCcchHHHHHHHHhhcCCeEEEEEe
Q 006070 196 GKYYEPHRCWEDI---------FDAITNARHMIYITGWSVYTEISLVRDSRRPKPGGDIMLGELLKKKASEGVRVCMLVW 266 (662)
Q Consensus 196 g~~~~~~~~~~~l---------~~aI~~Ak~~I~I~~w~~~p~~~L~r~~~~~~~~~~~~l~~lL~~kA~~GV~VrvLlw 266 (662)
-++|.+...|..| ...|++||+.=.=-.|.++|..-+.-...+ .-.+|..-|.+.++=|.+-+-|++
T Consensus 55 KDDyKHR~~WRElY~vEEa~~L~~Li~aAke~~i~F~YAiSPGlDitySspk----E~~TLKrKLDQV~qfGC~sfAlLF 130 (891)
T KOG3698|consen 55 KDDYKHRSLWRELYNVEEATYLRNLIEAAKENNINFVYAISPGLDITYSSPK----EMDTLKRKLDQVRQFGCDSFALLF 130 (891)
T ss_pred cchhHHHHHHHHHhhhHHHHHHHHHHHHHHhcCceEEEEcCCCcccccCCHH----HHHHHHHHHHHHHhhCchhhhhhh
Confidence 4556655556555 456788875433334667775544321110 124555555566666999999999
Q ss_pred cCccccccccccCccCCChHHHHhhhcCCCcEE
Q 006070 267 DDRTSVSLLKKDGLMATHDEETEKFFQGTDVHC 299 (662)
Q Consensus 267 d~~~s~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 299 (662)
|++.+. |...|++.+.-|.++.|++
T Consensus 131 DDIe~~--------m~~aDkevF~sFAhAqVsi 155 (891)
T KOG3698|consen 131 DDIEVQ--------MQDADKEVFTSFAHAQVSI 155 (891)
T ss_pred hhHHHH--------HhHhHHHHHHHhhhheeee
Confidence 998653 2333556666666665554
No 220
>KOG3508 consensus GTPase-activating protein [General function prediction only]
Probab=21.18 E-value=40 Score=40.77 Aligned_cols=95 Identities=20% Similarity=0.115 Sum_probs=62.1
Q ss_pred EEEEEEEeecCCCCCCCCccccccCCCCCCCCCcEEEEEECCeeeeeeeeecCCCCCCeeeeEEEEeccCCCc-eEEEEE
Q 006070 10 LHVTIYEVDQLESGGGGNFFTKLLGGLGKGGSELYATIDLEKARVGRTRMLKKEQSNPRWYESFHIYCAHMAS-NIIFTV 88 (662)
Q Consensus 10 L~V~I~eA~~L~~~~~~~~~~~~~~~~~~g~~DPYv~v~l~~~~~~kT~vi~~~t~nP~WNE~F~~~v~~~~~-~L~~~V 88 (662)
+...|.||+.|+.. .--+|..++++.-.+||.-..+ +.|=.|.|.|.|++..+.. ...-.+
T Consensus 104 ~~~wi~e~~~lp~~-----------------~~l~~~~~~d~~l~~r~~s~~~-~s~vl~gE~~~f~~lPpl~~~~~~~~ 165 (932)
T KOG3508|consen 104 GSYWIREAKRLPGK-----------------GKLSCLLQLDGTLYARTISKCG-TSNVLWGENFLFPVLPPLPVVDVLRV 165 (932)
T ss_pred eeEEeeccCcCCCc-----------------ceeehhhccchhHHhhhhhhcc-cchhccccccccccCCccchhhhhhh
Confidence 45567777777752 2346666676655567777776 9999999999998754432 222222
Q ss_pred EecCC----CCCceeEEEEeeeeeecCCceEEEEEeccC
Q 006070 89 KDDNP----IGATLIGRAYVPVEEVLGGEEVDKWVEILD 123 (662)
Q Consensus 89 ~D~d~----~~~~~IG~~~ipl~~l~~g~~~~~w~~L~~ 123 (662)
.+-+. ...+.||-+. +...+...+..+.|+.+..
T Consensus 166 ~~i~~~~k~~~n~~l~~~~-~~~f~~~~~~~d~w~~v~t 203 (932)
T KOG3508|consen 166 RAILPKKKKPTNDEIGFVK-GDEFPVHRDLEDGWYWVTT 203 (932)
T ss_pred hhhhhhhccCccccccccc-chhheecccccceeEEeec
Confidence 22222 2247999999 6666666677899999864
No 221
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=21.17 E-value=3.8e+02 Score=28.46 Aligned_cols=27 Identities=11% Similarity=0.306 Sum_probs=21.4
Q ss_pred cCCccceEEE-cCCCCCCCccccceeEEeccccCcC
Q 006070 322 FTHHQKIVVV-DSPMPNGDPERRRIMSFVGGIDLCD 356 (662)
Q Consensus 322 ~~hHqK~vVI-D~~~~~~~~~~~~~vafvGG~nl~~ 356 (662)
..-|.|+.+. .... ...||+|+.|++.
T Consensus 79 ~~~HgKlY~f~k~g~--------~~~a~IGSANfS~ 106 (296)
T PF09565_consen 79 PPYHGKLYIFSKNGK--------PFRAYIGSANFSQ 106 (296)
T ss_pred CCcccEEEEEecCCC--------ceEEEEeeccccc
Confidence 5889999999 3332 2389999999988
Done!