Query 006071
Match_columns 662
No_of_seqs 706 out of 3560
Neff 11.9
Searched_HMMs 46136
Date Thu Mar 28 17:55:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/006071.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/006071hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 6.1E-73 1.3E-77 609.7 66.8 607 17-653 48-689 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 2.4E-71 5.2E-76 597.3 65.8 594 23-651 124-721 (857)
3 PLN03218 maturation of RBCL 1; 100.0 1.3E-67 2.8E-72 554.8 67.1 520 20-554 370-915 (1060)
4 PLN03218 maturation of RBCL 1; 100.0 1.7E-65 3.7E-70 538.9 68.8 542 54-622 368-916 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 3.3E-60 7.2E-65 498.6 54.7 474 54-552 85-561 (697)
6 PLN03081 pentatricopeptide (PP 100.0 4.7E-60 1E-64 497.5 50.7 587 21-636 88-695 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.4E-38 5.3E-43 351.9 79.4 593 26-647 301-897 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.6E-36 3.5E-41 337.4 79.2 592 31-651 272-867 (899)
9 PRK11447 cellulose synthase su 100.0 1E-29 2.2E-34 281.1 71.1 431 203-647 276-737 (1157)
10 PRK11447 cellulose synthase su 100.0 3E-28 6.4E-33 269.5 70.1 599 27-650 35-700 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 7.5E-25 1.6E-29 230.7 69.3 581 32-654 56-710 (987)
12 KOG2002 TPR-containing nuclear 100.0 2.1E-24 4.5E-29 211.9 57.9 580 34-625 144-755 (1018)
13 PRK09782 bacteriophage N4 rece 100.0 8E-23 1.7E-27 215.5 68.5 594 11-641 68-731 (987)
14 KOG4626 O-linked N-acetylgluco 99.9 3.1E-23 6.8E-28 193.4 37.8 432 22-476 50-483 (966)
15 KOG4626 O-linked N-acetylgluco 99.9 9.4E-23 2E-27 190.2 39.3 435 94-553 51-488 (966)
16 KOG2002 TPR-containing nuclear 99.9 9.6E-21 2.1E-25 186.5 55.0 575 23-618 165-801 (1018)
17 TIGR00990 3a0801s09 mitochondr 99.9 2.2E-19 4.9E-24 186.9 52.0 430 164-616 130-572 (615)
18 TIGR00990 3a0801s09 mitochondr 99.9 7.3E-19 1.6E-23 183.1 53.2 252 316-580 308-571 (615)
19 KOG2076 RNA polymerase III tra 99.9 6.4E-18 1.4E-22 165.7 54.8 610 28-645 147-890 (895)
20 PRK15174 Vi polysaccharide exp 99.9 1.6E-19 3.4E-24 187.0 46.4 334 23-367 45-382 (656)
21 PRK11788 tetratricopeptide rep 99.9 1.8E-20 3.9E-25 185.6 35.2 295 29-332 44-348 (389)
22 PRK11788 tetratricopeptide rep 99.9 6.7E-20 1.4E-24 181.6 35.1 302 242-553 46-352 (389)
23 PRK10049 pgaA outer membrane p 99.9 2.2E-18 4.9E-23 182.5 48.5 413 160-617 14-458 (765)
24 PRK10049 pgaA outer membrane p 99.9 2.3E-18 5E-23 182.5 48.0 424 53-489 12-465 (765)
25 KOG0495 HAT repeat protein [RN 99.9 2.3E-15 5.1E-20 142.3 61.7 575 34-649 265-879 (913)
26 PRK15174 Vi polysaccharide exp 99.9 2.7E-18 6E-23 177.8 46.6 394 29-441 14-418 (656)
27 PRK14574 hmsH outer membrane p 99.9 1.8E-16 3.9E-21 164.4 54.0 448 29-488 43-521 (822)
28 KOG0495 HAT repeat protein [RN 99.9 2.3E-15 5E-20 142.4 55.9 534 9-581 337-881 (913)
29 PRK14574 hmsH outer membrane p 99.9 3.2E-16 6.9E-21 162.5 54.0 193 345-547 300-512 (822)
30 KOG2076 RNA polymerase III tra 99.8 4.8E-15 1E-19 145.9 53.7 583 22-612 175-892 (895)
31 KOG1915 Cell cycle control pro 99.8 1.2E-14 2.6E-19 132.4 47.7 437 32-491 85-547 (677)
32 KOG4422 Uncharacterized conser 99.8 3.4E-15 7.4E-20 134.1 43.0 423 93-547 118-589 (625)
33 KOG1915 Cell cycle control pro 99.8 3.7E-14 8E-19 129.2 47.5 470 90-580 72-585 (677)
34 KOG4422 Uncharacterized conser 99.8 3.1E-15 6.7E-20 134.4 39.2 463 31-542 126-619 (625)
35 KOG2003 TPR repeat-containing 99.8 1.7E-15 3.7E-20 137.0 33.7 468 34-534 215-709 (840)
36 KOG2047 mRNA splicing factor [ 99.7 1.6E-11 3.6E-16 116.6 52.3 541 54-609 100-717 (835)
37 KOG2003 TPR repeat-containing 99.7 2.6E-13 5.6E-18 123.1 36.1 476 128-637 203-710 (840)
38 KOG3785 Uncharacterized conser 99.7 1.3E-12 2.9E-17 114.7 33.6 225 429-662 269-502 (557)
39 KOG1156 N-terminal acetyltrans 99.7 2.8E-11 6.1E-16 115.4 44.7 460 32-511 19-509 (700)
40 KOG0547 Translocase of outer m 99.7 2.6E-12 5.5E-17 118.0 35.8 420 164-615 118-566 (606)
41 KOG2047 mRNA splicing factor [ 99.7 5.3E-10 1.1E-14 106.6 51.9 571 34-638 58-711 (835)
42 PF13429 TPR_15: Tetratricopep 99.7 7.7E-16 1.7E-20 143.9 13.0 258 273-545 15-274 (280)
43 KOG0547 Translocase of outer m 99.7 1.3E-12 2.8E-17 120.0 32.5 418 131-580 120-566 (606)
44 PF13429 TPR_15: Tetratricopep 99.7 1E-15 2.2E-20 143.0 13.3 258 63-328 15-274 (280)
45 KOG1173 Anaphase-promoting com 99.7 1.2E-11 2.7E-16 115.9 39.6 271 334-617 241-520 (611)
46 KOG1155 Anaphase-promoting com 99.7 6.4E-11 1.4E-15 108.4 42.5 360 193-580 161-536 (559)
47 PRK10747 putative protoheme IX 99.6 1.5E-12 3.2E-17 127.4 35.0 285 68-366 96-390 (398)
48 TIGR00540 hemY_coli hemY prote 99.6 1.3E-12 2.8E-17 128.6 34.3 294 67-367 95-400 (409)
49 PRK10747 putative protoheme IX 99.6 3.8E-12 8.1E-17 124.6 36.8 287 31-330 95-389 (398)
50 KOG1155 Anaphase-promoting com 99.6 1.6E-10 3.5E-15 105.8 43.7 383 229-634 162-553 (559)
51 KOG3785 Uncharacterized conser 99.6 3.7E-11 8E-16 105.9 38.2 453 27-523 29-498 (557)
52 TIGR00540 hemY_coli hemY prote 99.6 2E-12 4.4E-17 127.2 34.7 294 29-330 93-398 (409)
53 KOG1173 Anaphase-promoting com 99.6 3.2E-11 6.8E-16 113.2 39.2 277 263-555 241-523 (611)
54 KOG1126 DNA-binding cell divis 99.6 3.7E-13 8E-18 128.7 26.1 284 35-332 334-621 (638)
55 KOG4318 Bicoid mRNA stability 99.6 2.2E-11 4.7E-16 120.1 38.2 548 43-651 13-595 (1088)
56 KOG1126 DNA-binding cell divis 99.6 3.4E-13 7.3E-18 129.0 24.3 286 317-617 334-622 (638)
57 COG2956 Predicted N-acetylgluc 99.6 5.3E-12 1.2E-16 109.8 29.0 291 316-615 49-347 (389)
58 KOG1156 N-terminal acetyltrans 99.6 5.4E-09 1.2E-13 100.2 51.2 441 12-477 32-510 (700)
59 COG2956 Predicted N-acetylgluc 99.6 7.6E-12 1.6E-16 108.9 29.3 294 244-547 48-346 (389)
60 KOG4318 Bicoid mRNA stability 99.6 5.6E-11 1.2E-15 117.3 35.6 240 20-281 25-286 (1088)
61 COG3071 HemY Uncharacterized e 99.6 4.6E-11 9.9E-16 107.6 32.3 290 175-482 98-394 (400)
62 COG3071 HemY Uncharacterized e 99.6 2E-11 4.3E-16 109.9 29.8 292 245-547 98-389 (400)
63 KOG1127 TPR repeat-containing 99.5 6.4E-10 1.4E-14 111.4 40.3 566 33-618 471-1107(1238)
64 KOG1174 Anaphase-promoting com 99.5 2.1E-09 4.6E-14 97.1 37.0 292 277-583 207-503 (564)
65 KOG4162 Predicted calmodulin-b 99.5 4.8E-09 1E-13 102.7 41.6 435 87-547 319-782 (799)
66 KOG4162 Predicted calmodulin-b 99.5 5.3E-09 1.2E-13 102.4 41.9 435 157-618 319-786 (799)
67 KOG2376 Signal recognition par 99.5 4.1E-09 8.9E-14 99.9 39.6 458 170-650 21-520 (652)
68 KOG0985 Vesicle coat protein c 99.5 1.5E-07 3.2E-12 94.9 51.2 253 323-612 968-1246(1666)
69 PF12569 NARP1: NMDA receptor- 99.5 8.9E-09 1.9E-13 101.7 42.8 131 233-367 196-335 (517)
70 KOG3617 WD40 and TPR repeat-co 99.5 3.2E-08 6.9E-13 97.4 45.4 353 10-439 711-1105(1416)
71 KOG1174 Anaphase-promoting com 99.5 3.8E-09 8.2E-14 95.5 36.0 266 333-616 228-501 (564)
72 PRK12370 invasion protein regu 99.4 8.3E-11 1.8E-15 120.5 27.4 249 71-331 276-535 (553)
73 PRK12370 invasion protein regu 99.4 6.8E-11 1.5E-15 121.1 26.2 249 394-650 275-535 (553)
74 PF12569 NARP1: NMDA receptor- 99.4 2.7E-09 5.9E-14 105.2 35.9 298 206-513 14-334 (517)
75 TIGR02521 type_IV_pilW type IV 99.4 1.5E-10 3.2E-15 106.1 25.3 197 449-649 31-231 (234)
76 KOG1129 TPR repeat-containing 99.4 3.4E-11 7.4E-16 104.9 19.1 238 301-553 222-461 (478)
77 KOG1129 TPR repeat-containing 99.4 5E-11 1.1E-15 103.9 18.6 236 195-443 222-458 (478)
78 KOG2376 Signal recognition par 99.4 6.5E-08 1.4E-12 92.0 39.7 454 57-545 13-517 (652)
79 TIGR02521 type_IV_pilW type IV 99.4 5.6E-10 1.2E-14 102.3 25.9 199 267-476 32-230 (234)
80 COG3063 PilF Tfp pilus assembl 99.4 8E-10 1.7E-14 92.1 23.2 204 450-657 36-243 (250)
81 COG3063 PilF Tfp pilus assembl 99.3 5.6E-09 1.2E-13 87.1 25.0 199 268-477 37-235 (250)
82 KOG1127 TPR repeat-containing 99.3 3.5E-07 7.5E-12 92.5 41.7 583 24-628 496-1187(1238)
83 KOG1840 Kinesin light chain [C 99.3 2.2E-09 4.8E-14 104.4 25.0 234 415-648 200-477 (508)
84 KOG3616 Selective LIM binding 99.3 4E-07 8.7E-12 88.9 39.0 196 272-509 738-933 (1636)
85 KOG0985 Vesicle coat protein c 99.3 3.6E-06 7.9E-11 85.4 49.8 85 383-468 1282-1373(1666)
86 KOG3616 Selective LIM binding 99.3 8.2E-07 1.8E-11 86.8 40.4 459 29-575 453-932 (1636)
87 PRK11189 lipoprotein NlpI; Pro 99.3 6E-09 1.3E-13 97.5 25.6 205 415-626 65-275 (296)
88 KOG3617 WD40 and TPR repeat-co 99.2 1.8E-07 3.8E-12 92.4 34.9 455 89-645 724-1195(1416)
89 KOG1840 Kinesin light chain [C 99.2 1.2E-08 2.6E-13 99.4 26.7 245 301-546 198-477 (508)
90 KOG4340 Uncharacterized conser 99.2 6.8E-08 1.5E-12 83.7 28.0 355 91-475 10-372 (459)
91 KOG0624 dsRNA-activated protei 99.2 6.9E-07 1.5E-11 79.3 34.1 311 237-584 44-374 (504)
92 KOG0548 Molecular co-chaperone 99.2 1.8E-07 3.8E-12 88.3 32.0 437 28-496 10-471 (539)
93 PRK11189 lipoprotein NlpI; Pro 99.2 2.8E-08 6.1E-13 93.0 27.3 226 27-261 33-266 (296)
94 KOG0548 Molecular co-chaperone 99.2 2.5E-07 5.3E-12 87.3 31.9 104 64-171 10-114 (539)
95 PF13041 PPR_2: PPR repeat fam 99.2 8.8E-11 1.9E-15 75.8 6.5 49 229-277 1-49 (50)
96 PF13041 PPR_2: PPR repeat fam 99.2 8.9E-11 1.9E-15 75.8 6.5 49 194-242 1-49 (50)
97 KOG4340 Uncharacterized conser 99.1 1.3E-06 2.8E-11 75.9 30.7 293 22-328 12-336 (459)
98 cd05804 StaR_like StaR_like; a 99.1 6.1E-07 1.3E-11 87.8 33.0 92 385-476 119-213 (355)
99 cd05804 StaR_like StaR_like; a 99.1 6.4E-07 1.4E-11 87.7 32.6 191 29-223 15-213 (355)
100 KOG0624 dsRNA-activated protei 99.1 7.7E-07 1.7E-11 79.0 27.7 195 25-225 43-252 (504)
101 KOG1125 TPR repeat-containing 99.1 4.8E-08 1E-12 92.8 21.6 253 276-540 295-563 (579)
102 KOG1125 TPR repeat-containing 99.1 3.6E-08 7.9E-13 93.6 20.8 244 389-638 294-559 (579)
103 KOG1914 mRNA cleavage and poly 99.0 2.6E-05 5.6E-10 74.0 40.4 430 158-615 17-501 (656)
104 PRK04841 transcriptional regul 99.0 9.9E-05 2.2E-09 82.3 49.3 377 167-548 347-760 (903)
105 PF04733 Coatomer_E: Coatomer 99.0 3.5E-08 7.6E-13 90.7 17.6 148 390-547 112-264 (290)
106 PF04733 Coatomer_E: Coatomer 99.0 2.4E-08 5.2E-13 91.8 15.9 248 66-330 11-264 (290)
107 PRK04841 transcriptional regul 99.0 3.3E-06 7.1E-11 94.0 35.9 339 275-618 383-763 (903)
108 KOG1128 Uncharacterized conser 98.9 3.1E-06 6.8E-11 83.1 26.0 215 338-579 399-615 (777)
109 PLN02789 farnesyltranstransfer 98.8 5.2E-06 1.1E-10 77.6 26.5 204 389-598 46-267 (320)
110 PLN02789 farnesyltranstransfer 98.8 3.9E-06 8.4E-11 78.4 25.3 211 26-243 43-267 (320)
111 KOG2053 Mitochondrial inherita 98.8 0.00023 5.1E-09 72.1 52.2 224 32-261 21-256 (932)
112 KOG1070 rRNA processing protei 98.8 4.2E-06 9.1E-11 88.0 27.0 236 42-284 1446-1689(1710)
113 KOG1914 mRNA cleavage and poly 98.8 0.00016 3.5E-09 68.9 40.5 130 382-513 368-501 (656)
114 KOG1128 Uncharacterized conser 98.8 3.8E-06 8.1E-11 82.6 24.0 214 271-513 403-616 (777)
115 PRK14720 transcript cleavage f 98.8 7.1E-06 1.5E-10 85.6 27.3 220 265-547 30-251 (906)
116 TIGR03302 OM_YfiO outer membra 98.8 1.5E-06 3.2E-11 79.2 20.4 65 412-477 31-98 (235)
117 KOG1070 rRNA processing protei 98.8 9.4E-06 2E-10 85.5 27.1 206 265-483 1457-1668(1710)
118 TIGR03302 OM_YfiO outer membra 98.7 2.3E-06 4.9E-11 78.0 20.4 186 447-650 31-232 (235)
119 COG5010 TadD Flp pilus assembl 98.7 3.7E-06 8E-11 72.4 19.5 164 53-221 64-227 (257)
120 COG5010 TadD Flp pilus assembl 98.7 5E-06 1.1E-10 71.6 20.1 161 411-575 64-226 (257)
121 PRK14720 transcript cleavage f 98.7 6.4E-06 1.4E-10 85.9 24.0 238 379-640 30-274 (906)
122 KOG3081 Vesicle coat complex C 98.7 1.9E-05 4.1E-10 68.0 22.2 249 64-330 16-270 (299)
123 PRK15179 Vi polysaccharide bio 98.7 4E-06 8.6E-11 86.6 21.6 198 413-628 27-229 (694)
124 PRK10370 formate-dependent nit 98.6 6.3E-06 1.4E-10 71.6 19.2 149 456-620 23-178 (198)
125 KOG3081 Vesicle coat complex C 98.6 5.9E-05 1.3E-09 65.1 23.6 149 389-547 117-270 (299)
126 PRK10370 formate-dependent nit 98.6 2.2E-06 4.7E-11 74.5 15.6 119 69-190 52-173 (198)
127 KOG2053 Mitochondrial inherita 98.5 0.0016 3.6E-08 66.3 50.9 507 18-546 39-606 (932)
128 PF12854 PPR_1: PPR repeat 98.5 1.8E-07 4E-12 53.8 4.0 30 192-221 3-32 (34)
129 KOG3060 Uncharacterized conser 98.5 0.00015 3.2E-09 62.2 22.7 190 351-547 26-219 (289)
130 PRK15179 Vi polysaccharide bio 98.5 9.7E-05 2.1E-09 76.6 25.9 131 381-513 87-217 (694)
131 COG4783 Putative Zn-dependent 98.5 0.00017 3.7E-09 68.2 24.8 153 457-629 314-470 (484)
132 PF12854 PPR_1: PPR repeat 98.5 2.4E-07 5.3E-12 53.2 4.1 32 226-257 2-33 (34)
133 PRK15359 type III secretion sy 98.5 6.2E-06 1.4E-10 67.6 13.9 92 61-154 29-120 (144)
134 COG4783 Putative Zn-dependent 98.5 0.00035 7.6E-09 66.1 26.4 116 241-360 316-431 (484)
135 KOG3060 Uncharacterized conser 98.5 0.00019 4.1E-09 61.6 22.1 187 245-443 26-220 (289)
136 KOG0550 Molecular chaperone (D 98.4 0.00015 3.4E-09 66.6 21.8 174 241-444 59-233 (486)
137 PRK15359 type III secretion sy 98.4 3.9E-05 8.5E-10 62.9 16.8 87 206-294 34-120 (144)
138 TIGR02552 LcrH_SycD type III s 98.4 1.3E-05 2.7E-10 65.6 13.9 110 42-155 5-114 (135)
139 PF09976 TPR_21: Tetratricopep 98.3 4.3E-05 9.4E-10 63.0 15.6 114 497-612 24-144 (145)
140 PF09976 TPR_21: Tetratricopep 98.3 3.3E-05 7E-10 63.8 14.4 126 451-578 14-145 (145)
141 COG4700 Uncharacterized protei 98.3 0.00028 6E-09 57.4 17.7 132 481-614 86-221 (251)
142 TIGR02552 LcrH_SycD type III s 98.2 7.7E-05 1.7E-09 61.0 14.9 93 453-547 21-113 (135)
143 COG3898 Uncharacterized membra 98.1 0.0072 1.6E-07 55.6 27.8 256 349-623 132-400 (531)
144 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.8E-09 69.8 15.8 125 416-546 171-295 (395)
145 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00019 4.2E-09 68.6 15.7 122 131-258 174-295 (395)
146 PRK15363 pathogenicity island 98.1 0.00018 3.9E-09 57.9 13.1 96 518-616 34-133 (157)
147 COG3898 Uncharacterized membra 98.0 0.013 2.9E-07 54.0 30.5 256 278-555 132-399 (531)
148 KOG0550 Molecular chaperone (D 98.0 0.00066 1.4E-08 62.7 16.4 260 389-653 58-353 (486)
149 PF07079 DUF1347: Protein of u 97.9 0.021 4.5E-07 54.0 37.3 435 172-628 17-537 (549)
150 PF12895 Apc3: Anaphase-promot 97.9 1.7E-05 3.7E-10 58.1 4.8 78 564-643 2-80 (84)
151 PF12688 TPR_5: Tetratrico pep 97.9 0.0006 1.3E-08 52.9 13.3 91 525-615 7-104 (120)
152 PF14938 SNAP: Soluble NSF att 97.9 0.0045 9.8E-08 57.7 21.1 143 456-613 101-264 (282)
153 PRK15363 pathogenicity island 97.9 0.00024 5.2E-09 57.2 10.6 95 58-154 37-131 (157)
154 TIGR02795 tol_pal_ybgF tol-pal 97.8 0.00047 1E-08 54.8 12.4 96 521-616 4-106 (119)
155 TIGR00756 PPR pentatricopeptid 97.8 3.6E-05 7.8E-10 45.1 4.4 33 233-265 2-34 (35)
156 TIGR00756 PPR pentatricopeptid 97.8 4.2E-05 9.1E-10 44.9 4.4 33 451-483 2-34 (35)
157 PF12895 Apc3: Anaphase-promot 97.8 4.7E-05 1E-09 55.8 5.5 82 33-116 2-83 (84)
158 PRK10866 outer membrane biogen 97.8 0.0091 2E-07 53.9 21.1 177 455-649 38-240 (243)
159 PF13812 PPR_3: Pentatricopept 97.8 4.3E-05 9.2E-10 44.4 4.1 30 198-227 3-32 (34)
160 COG4700 Uncharacterized protei 97.8 0.0017 3.7E-08 53.0 14.2 156 23-183 59-215 (251)
161 PF13812 PPR_3: Pentatricopept 97.8 5.2E-05 1.1E-09 44.0 4.4 32 451-482 3-34 (34)
162 PF10037 MRP-S27: Mitochondria 97.8 0.00054 1.2E-08 65.9 13.2 112 124-235 64-177 (429)
163 PLN03088 SGT1, suppressor of 97.8 0.0005 1.1E-08 66.2 13.2 92 27-121 9-100 (356)
164 PF07079 DUF1347: Protein of u 97.8 0.041 8.8E-07 52.1 39.4 445 66-545 16-521 (549)
165 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0015 3.2E-08 51.9 13.8 92 454-547 7-104 (119)
166 PF14938 SNAP: Soluble NSF att 97.7 0.0029 6.3E-08 59.0 17.6 168 452-647 38-222 (282)
167 KOG1130 Predicted G-alpha GTPa 97.7 0.00029 6.3E-09 64.8 10.1 260 389-648 26-342 (639)
168 PRK02603 photosystem I assembl 97.7 0.0032 7E-08 53.7 16.2 89 450-539 36-126 (172)
169 KOG0553 TPR repeat-containing 97.7 0.00032 6.9E-09 62.1 9.7 96 457-557 89-185 (304)
170 PRK02603 photosystem I assembl 97.7 0.0015 3.2E-08 55.8 13.8 92 54-146 33-126 (172)
171 cd00189 TPR Tetratricopeptide 97.7 0.00068 1.5E-08 51.2 10.7 58 94-152 37-94 (100)
172 PF08579 RPM2: Mitochondrial r 97.7 0.00088 1.9E-08 49.8 9.9 41 168-208 32-73 (120)
173 cd00189 TPR Tetratricopeptide 97.7 0.00089 1.9E-08 50.6 11.0 90 386-476 6-95 (100)
174 PF05843 Suf: Suppressor of fo 97.6 0.0013 2.7E-08 61.1 13.6 78 144-223 54-134 (280)
175 COG4235 Cytochrome c biogenesi 97.6 0.002 4.3E-08 57.6 14.0 117 501-619 139-260 (287)
176 PLN03088 SGT1, suppressor of 97.6 0.0016 3.5E-08 62.7 14.8 104 387-493 9-112 (356)
177 PF10037 MRP-S27: Mitochondria 97.6 0.0011 2.4E-08 63.8 13.3 122 158-279 63-186 (429)
178 COG4235 Cytochrome c biogenesi 97.6 0.0029 6.3E-08 56.6 14.8 116 36-155 138-256 (287)
179 PF14559 TPR_19: Tetratricopep 97.6 0.00025 5.4E-09 49.5 6.8 55 30-86 1-55 (68)
180 KOG2041 WD40 repeat protein [G 97.6 0.09 2E-06 52.6 28.8 204 53-291 689-903 (1189)
181 KOG2041 WD40 repeat protein [G 97.6 0.093 2E-06 52.5 31.0 31 193-223 689-719 (1189)
182 PF08579 RPM2: Mitochondrial r 97.6 0.0014 3.1E-08 48.7 10.2 74 133-206 32-114 (120)
183 COG5107 RNA14 Pre-mRNA 3'-end 97.6 0.072 1.6E-06 50.4 36.2 427 158-615 39-531 (660)
184 PF05843 Suf: Suppressor of fo 97.6 0.0013 2.9E-08 60.9 12.6 130 382-513 3-136 (280)
185 PRK10866 outer membrane biogen 97.6 0.02 4.4E-07 51.7 19.8 56 237-292 181-238 (243)
186 CHL00033 ycf3 photosystem I as 97.5 0.0015 3.2E-08 55.6 11.8 81 56-137 35-117 (168)
187 KOG1538 Uncharacterized conser 97.5 0.028 6.1E-07 55.4 20.8 82 487-579 750-845 (1081)
188 PF12688 TPR_5: Tetratrico pep 97.5 0.0048 1E-07 48.0 13.0 107 26-137 7-117 (120)
189 KOG0553 TPR repeat-containing 97.5 0.0016 3.5E-08 57.8 11.2 99 390-491 91-189 (304)
190 CHL00033 ycf3 photosystem I as 97.5 0.0062 1.3E-07 51.8 14.5 80 450-530 36-117 (168)
191 PRK10803 tol-pal system protei 97.5 0.0019 4E-08 58.7 11.8 95 522-616 146-247 (263)
192 PRK10153 DNA-binding transcrip 97.5 0.023 4.9E-07 57.5 20.5 135 410-547 333-481 (517)
193 PF13432 TPR_16: Tetratricopep 97.5 0.00029 6.2E-09 48.5 5.1 57 27-85 4-60 (65)
194 COG1729 Uncharacterized protei 97.4 0.0019 4.2E-08 57.0 11.1 97 562-658 152-253 (262)
195 PF13432 TPR_16: Tetratricopep 97.4 0.0006 1.3E-08 46.9 6.6 55 492-547 5-59 (65)
196 PF14559 TPR_19: Tetratricopep 97.4 0.00066 1.4E-08 47.3 6.6 51 496-547 3-53 (68)
197 PRK10153 DNA-binding transcrip 97.4 0.01 2.2E-07 60.1 17.3 140 377-518 334-487 (517)
198 PRK15331 chaperone protein Sic 97.4 0.007 1.5E-07 49.2 12.9 92 524-616 42-135 (165)
199 PF13414 TPR_11: TPR repeat; P 97.4 0.00081 1.8E-08 47.0 7.0 61 486-547 5-66 (69)
200 PF01535 PPR: PPR repeat; Int 97.4 0.00026 5.7E-09 39.9 3.5 26 199-224 3-28 (31)
201 PF01535 PPR: PPR repeat; Int 97.4 0.00024 5.2E-09 40.1 3.3 29 451-479 2-30 (31)
202 PF06239 ECSIT: Evolutionarily 97.4 0.0056 1.2E-07 52.0 12.4 104 158-280 44-152 (228)
203 PF13525 YfiO: Outer membrane 97.3 0.099 2.1E-06 45.9 21.2 171 455-641 11-198 (203)
204 COG4105 ComL DNA uptake lipopr 97.3 0.11 2.3E-06 45.9 21.2 179 459-654 44-237 (254)
205 PF13525 YfiO: Outer membrane 97.3 0.06 1.3E-06 47.3 19.0 57 99-155 13-71 (203)
206 PRK10803 tol-pal system protei 97.2 0.0071 1.5E-07 55.0 12.8 87 495-581 154-247 (263)
207 KOG1130 Predicted G-alpha GTPa 97.2 0.021 4.5E-07 53.1 15.0 132 382-513 197-344 (639)
208 PRK15331 chaperone protein Sic 97.2 0.0087 1.9E-07 48.6 11.0 93 558-652 44-136 (165)
209 PF06239 ECSIT: Evolutionarily 97.1 0.0079 1.7E-07 51.1 11.0 115 111-246 34-153 (228)
210 PF13414 TPR_11: TPR repeat; P 97.1 0.0018 3.8E-08 45.2 5.8 61 415-476 4-65 (69)
211 PF13281 DUF4071: Domain of un 97.0 0.19 4.1E-06 47.8 20.3 33 589-622 308-340 (374)
212 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.34 7.4E-06 46.1 39.5 457 41-553 30-534 (660)
213 KOG1258 mRNA processing protei 96.9 0.52 1.1E-05 46.9 36.5 311 34-364 59-393 (577)
214 KOG2796 Uncharacterized conser 96.9 0.26 5.7E-06 43.3 21.6 137 305-444 180-316 (366)
215 COG3118 Thioredoxin domain-con 96.9 0.22 4.8E-06 44.8 18.0 122 29-154 143-264 (304)
216 COG3118 Thioredoxin domain-con 96.8 0.21 4.5E-06 45.0 17.6 147 491-640 141-291 (304)
217 KOG2114 Vacuolar assembly/sort 96.8 0.75 1.6E-05 47.6 26.3 183 57-258 335-517 (933)
218 PF13371 TPR_9: Tetratricopept 96.8 0.0076 1.7E-07 42.6 7.2 58 28-87 3-60 (73)
219 PLN03098 LPA1 LOW PSII ACCUMUL 96.8 0.016 3.4E-07 55.6 11.1 60 519-580 75-141 (453)
220 PF13371 TPR_9: Tetratricopept 96.8 0.01 2.3E-07 41.9 7.8 54 493-547 4-57 (73)
221 PF03704 BTAD: Bacterial trans 96.7 0.058 1.3E-06 44.5 12.7 69 417-486 65-138 (146)
222 PF13281 DUF4071: Domain of un 96.7 0.53 1.1E-05 44.9 20.0 79 382-460 143-228 (374)
223 COG4105 ComL DNA uptake lipopr 96.6 0.45 9.7E-06 42.1 18.6 71 390-460 44-117 (254)
224 PF04840 Vps16_C: Vps16, C-ter 96.6 0.65 1.4E-05 43.8 31.9 109 486-611 179-287 (319)
225 KOG1538 Uncharacterized conser 96.6 0.21 4.6E-06 49.7 17.3 100 301-442 746-845 (1081)
226 KOG1941 Acetylcholine receptor 96.5 0.31 6.8E-06 44.9 16.7 164 416-579 85-274 (518)
227 KOG2062 26S proteasome regulat 96.5 1.2 2.5E-05 45.6 33.9 122 423-547 510-634 (929)
228 KOG2796 Uncharacterized conser 96.5 0.51 1.1E-05 41.5 23.6 130 165-295 181-315 (366)
229 KOG2280 Vacuolar assembly/sort 96.5 1.2 2.6E-05 45.6 28.8 109 485-609 685-793 (829)
230 PF13424 TPR_12: Tetratricopep 96.5 0.0043 9.4E-08 44.5 4.4 28 587-614 47-74 (78)
231 KOG4555 TPR repeat-containing 96.5 0.038 8.2E-07 42.4 9.2 92 560-652 52-146 (175)
232 COG1729 Uncharacterized protei 96.5 0.063 1.4E-06 47.7 12.0 87 529-615 151-244 (262)
233 PF08631 SPO22: Meiosis protei 96.4 0.81 1.8E-05 42.6 24.3 91 352-442 51-149 (278)
234 KOG2114 Vacuolar assembly/sort 96.4 1.5 3.3E-05 45.5 25.7 178 22-223 336-517 (933)
235 COG4649 Uncharacterized protei 96.4 0.39 8.5E-06 39.3 14.7 125 495-619 69-200 (221)
236 COG0457 NrfG FOG: TPR repeat [ 96.4 0.74 1.6E-05 41.8 25.9 222 394-617 37-267 (291)
237 PF10300 DUF3808: Protein of u 96.4 0.2 4.2E-06 50.5 16.4 101 534-637 248-356 (468)
238 KOG2610 Uncharacterized conser 96.4 0.19 4E-06 45.8 14.1 120 29-151 112-234 (491)
239 PF03704 BTAD: Bacterial trans 96.3 0.03 6.6E-07 46.2 9.1 116 30-164 16-139 (146)
240 PF13424 TPR_12: Tetratricopep 96.3 0.013 2.9E-07 42.0 6.0 60 487-546 8-73 (78)
241 PF13512 TPR_18: Tetratricopep 96.3 0.17 3.7E-06 40.3 12.2 65 525-589 16-85 (142)
242 KOG0543 FKBP-type peptidyl-pro 96.3 0.084 1.8E-06 49.6 12.0 93 556-650 262-356 (397)
243 KOG1258 mRNA processing protei 96.3 1.5 3.1E-05 43.9 38.4 129 163-294 47-179 (577)
244 KOG2610 Uncharacterized conser 96.3 0.14 3E-06 46.6 12.8 153 392-545 115-273 (491)
245 PF04840 Vps16_C: Vps16, C-ter 96.2 1.2 2.5E-05 42.1 32.1 108 451-575 179-286 (319)
246 smart00299 CLH Clathrin heavy 96.2 0.5 1.1E-05 38.6 15.3 48 20-69 7-54 (140)
247 PF10300 DUF3808: Protein of u 96.1 0.32 6.8E-06 49.0 16.5 142 400-547 177-333 (468)
248 PRK11906 transcriptional regul 96.1 0.43 9.4E-06 46.3 16.3 111 499-613 319-434 (458)
249 KOG1941 Acetylcholine receptor 96.1 0.79 1.7E-05 42.4 16.8 130 417-546 125-273 (518)
250 PF13512 TPR_18: Tetratricopep 96.1 0.098 2.1E-06 41.7 10.0 103 560-662 19-141 (142)
251 COG2976 Uncharacterized protei 96.0 0.67 1.4E-05 39.0 14.6 91 525-617 95-190 (207)
252 PF12921 ATP13: Mitochondrial 95.9 0.13 2.8E-06 40.6 10.2 87 337-423 2-97 (126)
253 COG2976 Uncharacterized protei 95.9 0.4 8.7E-06 40.2 13.0 130 450-581 55-189 (207)
254 COG4649 Uncharacterized protei 95.8 0.58 1.3E-05 38.3 13.1 137 53-190 56-196 (221)
255 KOG1920 IkappaB kinase complex 95.8 3.1 6.7E-05 45.3 21.8 189 425-645 862-1050(1265)
256 PF04184 ST7: ST7 protein; In 95.8 0.78 1.7E-05 44.7 16.1 165 24-203 172-338 (539)
257 PRK11906 transcriptional regul 95.7 1.1 2.4E-05 43.6 17.2 116 395-513 273-401 (458)
258 PF12921 ATP13: Mitochondrial 95.7 0.18 3.8E-06 39.8 10.1 95 414-528 2-97 (126)
259 KOG0543 FKBP-type peptidyl-pro 95.7 0.32 7E-06 45.9 13.0 61 383-443 260-320 (397)
260 PF09205 DUF1955: Domain of un 95.6 0.82 1.8E-05 35.6 13.8 61 385-445 91-151 (161)
261 KOG4555 TPR repeat-containing 95.5 0.35 7.6E-06 37.4 10.2 90 390-479 53-145 (175)
262 KOG1585 Protein required for f 95.4 1.2 2.6E-05 38.9 14.3 21 421-441 38-58 (308)
263 PLN03098 LPA1 LOW PSII ACCUMUL 95.4 0.2 4.4E-06 48.3 10.9 66 53-119 72-140 (453)
264 KOG1920 IkappaB kinase complex 95.4 5.4 0.00012 43.6 26.2 23 625-647 1188-1210(1265)
265 smart00299 CLH Clathrin heavy 95.4 1.2 2.7E-05 36.2 15.9 126 383-530 10-136 (140)
266 PF09205 DUF1955: Domain of un 95.2 1.1 2.4E-05 34.9 13.6 137 314-480 14-151 (161)
267 KOG1585 Protein required for f 95.2 2 4.3E-05 37.7 15.9 25 304-328 93-117 (308)
268 PF04053 Coatomer_WDAD: Coatom 95.1 0.71 1.5E-05 45.8 14.3 97 173-290 330-426 (443)
269 PF13428 TPR_14: Tetratricopep 95.1 0.054 1.2E-06 33.4 4.4 13 34-46 15-27 (44)
270 KOG1586 Protein required for f 95.0 2.1 4.7E-05 37.2 19.3 88 563-651 166-260 (288)
271 PF04053 Coatomer_WDAD: Coatom 95.0 1 2.2E-05 44.7 15.0 104 164-294 298-401 (443)
272 KOG2396 HAT (Half-A-TPR) repea 94.9 4.2 9E-05 39.9 38.6 93 37-133 88-181 (568)
273 PF13428 TPR_14: Tetratricopep 94.8 0.084 1.8E-06 32.5 4.7 39 383-421 4-42 (44)
274 KOG2280 Vacuolar assembly/sort 94.6 6.4 0.00014 40.7 36.5 104 521-643 686-792 (829)
275 PF10345 Cohesin_load: Cohesin 94.6 7.4 0.00016 41.2 38.6 186 37-223 38-252 (608)
276 PF09613 HrpB1_HrpK: Bacterial 94.4 2.2 4.8E-05 34.9 13.0 51 496-547 22-72 (160)
277 KOG4234 TPR repeat-containing 94.2 0.5 1.1E-05 39.7 8.9 90 525-617 101-199 (271)
278 KOG3941 Intermediate in Toll s 94.0 0.6 1.3E-05 41.6 9.5 104 159-281 65-173 (406)
279 PF13431 TPR_17: Tetratricopep 93.9 0.096 2.1E-06 30.0 3.2 32 43-76 2-33 (34)
280 PF13431 TPR_17: Tetratricopep 93.8 0.083 1.8E-06 30.2 2.8 32 403-434 2-33 (34)
281 KOG3941 Intermediate in Toll s 93.7 0.68 1.5E-05 41.3 9.4 104 195-318 66-174 (406)
282 PF04184 ST7: ST7 protein; In 93.6 4.4 9.6E-05 39.8 15.3 149 8-168 186-338 (539)
283 PF08631 SPO22: Meiosis protei 93.3 7 0.00015 36.4 25.8 61 164-225 87-150 (278)
284 KOG4234 TPR repeat-containing 93.3 2.4 5.3E-05 35.8 11.3 95 457-555 103-202 (271)
285 PF07035 Mic1: Colon cancer-as 93.3 4.3 9.3E-05 33.8 15.2 99 114-222 17-115 (167)
286 PF11207 DUF2989: Protein of u 93.2 1.6 3.5E-05 37.2 10.5 91 17-110 104-197 (203)
287 PF13176 TPR_7: Tetratricopept 93.1 0.23 5E-06 28.8 4.0 25 589-613 2-26 (36)
288 COG3629 DnrI DNA-binding trans 93.1 1.2 2.6E-05 40.6 10.3 78 127-205 154-236 (280)
289 PRK11619 lytic murein transgly 92.8 15 0.00032 38.9 28.2 316 240-579 42-374 (644)
290 COG3629 DnrI DNA-binding trans 92.8 1.2 2.7E-05 40.5 10.0 77 382-458 155-236 (280)
291 PF13170 DUF4003: Protein of u 92.6 9 0.0002 35.9 21.5 133 213-347 79-227 (297)
292 COG0457 NrfG FOG: TPR repeat [ 92.3 8.1 0.00018 34.7 31.1 199 382-583 61-268 (291)
293 PF10602 RPN7: 26S proteasome 92.1 2 4.3E-05 36.6 10.0 61 486-546 38-100 (177)
294 PF00515 TPR_1: Tetratricopept 92.1 0.46 1E-05 27.0 4.4 27 521-547 3-29 (34)
295 COG4785 NlpI Lipoprotein NlpI, 92.0 7.5 0.00016 33.6 16.0 183 70-261 79-267 (297)
296 PF13176 TPR_7: Tetratricopept 91.9 0.45 9.7E-06 27.6 4.2 25 522-546 2-26 (36)
297 PF07719 TPR_2: Tetratricopept 91.8 0.47 1E-05 26.9 4.3 30 587-616 2-31 (34)
298 TIGR03504 FimV_Cterm FimV C-te 91.7 0.5 1.1E-05 28.9 4.3 27 591-617 4-30 (44)
299 PF09613 HrpB1_HrpK: Bacterial 91.6 6.7 0.00014 32.3 13.3 51 392-442 22-72 (160)
300 PF07035 Mic1: Colon cancer-as 91.6 7.1 0.00015 32.6 17.0 135 218-367 16-150 (167)
301 KOG0276 Vesicle coat complex C 91.4 5.2 0.00011 40.2 12.8 153 29-222 595-747 (794)
302 PF10602 RPN7: 26S proteasome 91.4 4.1 8.9E-05 34.7 11.2 62 233-294 38-101 (177)
303 KOG1550 Extracellular protein 91.3 21 0.00045 37.3 25.6 255 348-616 260-539 (552)
304 PF07719 TPR_2: Tetratricopept 91.1 0.61 1.3E-05 26.4 4.3 27 521-547 3-29 (34)
305 PF00515 TPR_1: Tetratricopept 91.0 0.65 1.4E-05 26.4 4.3 30 587-616 2-31 (34)
306 KOG4648 Uncharacterized conser 90.9 0.8 1.7E-05 42.0 6.5 19 528-546 106-124 (536)
307 PRK15180 Vi polysaccharide bio 90.9 17 0.00037 35.6 31.3 120 137-260 300-420 (831)
308 PF04097 Nic96: Nup93/Nic96; 90.5 26 0.00057 37.1 20.7 38 100-138 120-157 (613)
309 PF04097 Nic96: Nup93/Nic96; 90.4 27 0.00057 37.0 21.8 87 387-477 265-355 (613)
310 KOG1550 Extracellular protein 90.3 25 0.00055 36.6 24.9 180 395-581 343-539 (552)
311 KOG4648 Uncharacterized conser 90.2 2 4.2E-05 39.6 8.3 92 420-513 103-194 (536)
312 PF02259 FAT: FAT domain; Int 90.2 19 0.00041 35.0 23.6 65 195-259 145-212 (352)
313 PF00637 Clathrin: Region in C 90.0 0.019 4.1E-07 47.2 -4.1 91 19-117 6-96 (143)
314 COG4785 NlpI Lipoprotein NlpI, 89.3 14 0.00029 32.1 18.5 83 394-477 79-161 (297)
315 PRK11619 lytic murein transgly 89.2 33 0.00072 36.4 39.6 61 302-363 312-372 (644)
316 KOG2471 TPR repeat-containing 89.1 24 0.00053 34.7 15.0 40 174-213 30-69 (696)
317 PF08424 NRDE-2: NRDE-2, neces 89.0 22 0.00047 34.0 17.6 117 432-550 49-185 (321)
318 TIGR02561 HrpB1_HrpK type III 88.8 11 0.00024 30.5 12.2 52 496-549 22-74 (153)
319 KOG4570 Uncharacterized conser 88.3 4.4 9.5E-05 37.0 9.0 98 379-478 63-164 (418)
320 PF07721 TPR_4: Tetratricopept 87.9 0.88 1.9E-05 24.0 2.9 21 590-610 5-25 (26)
321 cd00923 Cyt_c_Oxidase_Va Cytoc 87.8 4.9 0.00011 29.5 7.3 59 467-526 25-83 (103)
322 PF13170 DUF4003: Protein of u 87.7 25 0.00053 33.0 19.3 47 109-155 80-132 (297)
323 PF13181 TPR_8: Tetratricopept 87.6 1.6 3.6E-05 24.6 4.3 28 588-615 3-30 (34)
324 PF10579 Rapsyn_N: Rapsyn N-te 87.5 1.4 3.1E-05 30.7 4.4 49 563-611 18-68 (80)
325 PF09986 DUF2225: Uncharacteri 87.4 11 0.00024 33.3 11.1 53 568-620 142-199 (214)
326 TIGR02561 HrpB1_HrpK type III 87.2 14 0.00031 29.8 11.9 51 393-443 23-73 (153)
327 PRK09687 putative lyase; Provi 86.9 26 0.00057 32.6 27.4 121 195-330 141-262 (280)
328 PF02259 FAT: FAT domain; Int 86.8 32 0.00069 33.4 25.0 61 382-442 148-212 (352)
329 PF13174 TPR_6: Tetratricopept 86.6 1.4 3E-05 24.6 3.6 26 590-615 4-29 (33)
330 PF13374 TPR_10: Tetratricopep 86.5 1.8 3.9E-05 25.9 4.3 27 588-614 4-30 (42)
331 KOG0276 Vesicle coat complex C 86.4 14 0.00031 37.3 12.0 135 20-188 614-748 (794)
332 COG4455 ImpE Protein of avirul 86.4 6.3 0.00014 34.1 8.4 77 382-458 3-81 (273)
333 PF13374 TPR_10: Tetratricopep 86.2 2.1 4.6E-05 25.5 4.5 28 520-547 3-30 (42)
334 PF10345 Cohesin_load: Cohesin 86.1 51 0.0011 35.1 41.3 189 460-649 372-605 (608)
335 PF02284 COX5A: Cytochrome c o 85.3 13 0.00029 27.6 9.5 47 467-513 28-74 (108)
336 TIGR02508 type_III_yscG type I 85.3 9.1 0.0002 28.3 7.6 52 560-617 48-99 (115)
337 PF13181 TPR_8: Tetratricopept 84.9 1.8 3.9E-05 24.4 3.5 27 521-547 3-29 (34)
338 COG2909 MalT ATP-dependent tra 84.8 62 0.0013 34.9 29.4 229 347-579 425-687 (894)
339 KOG1464 COP9 signalosome, subu 84.7 30 0.00064 31.1 19.4 229 372-600 18-286 (440)
340 PF14561 TPR_20: Tetratricopep 84.5 12 0.00027 27.4 8.4 66 41-108 9-75 (90)
341 KOG2034 Vacuolar sorting prote 84.5 63 0.0014 34.7 25.3 172 168-363 365-556 (911)
342 KOG4570 Uncharacterized conser 84.3 5.3 0.00012 36.5 7.5 94 93-190 66-164 (418)
343 KOG2396 HAT (Half-A-TPR) repea 84.2 47 0.001 33.1 41.3 93 556-650 465-560 (568)
344 COG1747 Uncharacterized N-term 84.1 48 0.001 33.1 24.0 62 231-295 66-127 (711)
345 PF13929 mRNA_stabil: mRNA sta 84.0 35 0.00075 31.4 13.9 168 36-207 112-289 (292)
346 PF11207 DUF2989: Protein of u 84.0 17 0.00036 31.3 9.9 78 137-216 118-198 (203)
347 cd00923 Cyt_c_Oxidase_Va Cytoc 83.9 9.7 0.00021 28.0 7.2 31 157-187 38-68 (103)
348 KOG3364 Membrane protein invol 83.8 6.2 0.00014 31.1 6.7 50 566-615 50-100 (149)
349 PF14561 TPR_20: Tetratricopep 83.6 9.8 0.00021 28.0 7.6 66 573-639 10-76 (90)
350 TIGR02508 type_III_yscG type I 83.5 16 0.00034 27.1 10.2 93 29-130 12-106 (115)
351 PRK15180 Vi polysaccharide bio 83.3 49 0.0011 32.6 34.3 123 30-156 299-421 (831)
352 PF07721 TPR_4: Tetratricopept 82.8 2.5 5.4E-05 22.2 3.1 19 61-79 6-24 (26)
353 COG1747 Uncharacterized N-term 82.7 55 0.0012 32.7 26.0 93 337-441 66-158 (711)
354 COG5159 RPN6 26S proteasome re 82.4 28 0.0006 31.6 10.9 23 591-613 130-152 (421)
355 KOG0890 Protein kinase of the 81.9 1.3E+02 0.0029 36.6 36.8 331 20-368 1383-1733(2382)
356 PF13934 ELYS: Nuclear pore co 81.9 33 0.00072 30.7 11.7 106 522-636 79-187 (226)
357 KOG1464 COP9 signalosome, subu 81.8 39 0.00085 30.4 16.7 187 426-613 39-258 (440)
358 PF08424 NRDE-2: NRDE-2, neces 81.4 51 0.0011 31.5 16.5 27 200-226 158-184 (321)
359 PF06552 TOM20_plant: Plant sp 81.0 13 0.00028 31.2 8.0 42 566-615 95-136 (186)
360 PF06552 TOM20_plant: Plant sp 80.6 13 0.00029 31.2 8.0 32 36-69 7-38 (186)
361 COG0790 FOG: TPR repeat, SEL1 80.4 52 0.0011 30.9 23.1 115 499-617 128-268 (292)
362 PF00637 Clathrin: Region in C 80.0 0.9 2E-05 37.2 1.3 13 415-427 43-55 (143)
363 COG4455 ImpE Protein of avirul 79.7 41 0.0009 29.4 11.6 77 451-528 3-81 (273)
364 PF13174 TPR_6: Tetratricopept 79.2 3.2 6.9E-05 23.1 3.1 23 525-547 6-28 (33)
365 PF02284 COX5A: Cytochrome c o 79.0 24 0.00053 26.3 9.2 45 179-223 28-72 (108)
366 KOG0890 Protein kinase of the 78.4 1.7E+02 0.0038 35.8 34.9 61 519-580 1670-1731(2382)
367 PF10366 Vps39_1: Vacuolar sor 78.2 29 0.00062 26.6 9.7 42 564-614 26-67 (108)
368 KOG3364 Membrane protein invol 77.4 34 0.00075 27.2 10.3 72 481-554 29-104 (149)
369 PF08311 Mad3_BUB1_I: Mad3/BUB 77.4 12 0.00027 29.6 6.9 44 569-612 81-125 (126)
370 PF07163 Pex26: Pex26 protein; 76.1 34 0.00075 31.1 9.6 22 455-476 124-145 (309)
371 smart00028 TPR Tetratricopepti 76.0 5.5 0.00012 21.4 3.6 28 588-615 3-30 (34)
372 KOG2471 TPR repeat-containing 75.8 89 0.0019 31.1 15.3 43 591-634 340-382 (696)
373 TIGR03504 FimV_Cterm FimV C-te 74.9 8.8 0.00019 23.5 4.1 21 456-476 6-26 (44)
374 COG3947 Response regulator con 73.7 75 0.0016 29.3 16.0 57 557-614 285-341 (361)
375 KOG4642 Chaperone-dependent E3 73.3 68 0.0015 28.6 11.0 100 392-493 22-126 (284)
376 KOG2066 Vacuolar assembly/sort 73.1 1.3E+02 0.0029 31.9 26.9 22 202-223 511-532 (846)
377 KOG2063 Vacuolar assembly/sort 72.9 1.5E+02 0.0033 32.6 20.1 115 382-496 506-638 (877)
378 KOG0128 RNA-binding protein SA 71.3 1.5E+02 0.0033 31.8 35.3 219 381-606 313-554 (881)
379 PF14853 Fis1_TPR_C: Fis1 C-te 70.9 18 0.00039 23.3 5.1 28 525-554 7-34 (53)
380 PF09670 Cas_Cas02710: CRISPR- 70.9 77 0.0017 31.2 11.9 56 457-513 139-198 (379)
381 PF04910 Tcf25: Transcriptiona 70.7 1.1E+02 0.0024 29.9 19.2 140 31-189 21-167 (360)
382 smart00777 Mad3_BUB1_I Mad3/BU 70.3 27 0.0006 27.5 7.0 44 568-611 80-124 (125)
383 PF09477 Type_III_YscG: Bacter 68.7 49 0.0011 25.1 9.5 82 32-121 18-99 (116)
384 PF09986 DUF2225: Uncharacteri 68.6 85 0.0018 27.8 12.1 65 521-585 120-199 (214)
385 PRK09687 putative lyase; Provi 68.3 1E+02 0.0023 28.7 28.2 17 124-140 35-51 (280)
386 PF13762 MNE1: Mitochondrial s 68.2 64 0.0014 26.3 10.6 80 383-462 42-128 (145)
387 KOG4507 Uncharacterized conser 67.6 25 0.00055 35.5 7.6 148 194-348 569-721 (886)
388 PF13929 mRNA_stabil: mRNA sta 67.5 1E+02 0.0023 28.4 17.5 136 106-241 143-288 (292)
389 PF07575 Nucleopor_Nup85: Nup8 67.5 58 0.0012 34.3 11.0 27 196-222 405-431 (566)
390 PRK10941 hypothetical protein; 67.1 65 0.0014 29.7 9.8 75 556-631 186-261 (269)
391 COG3947 Response regulator con 66.0 1.1E+02 0.0024 28.2 16.0 42 248-291 150-191 (361)
392 COG0790 FOG: TPR repeat, SEL1 65.7 1.2E+02 0.0026 28.5 20.7 182 393-583 54-269 (292)
393 PF10579 Rapsyn_N: Rapsyn N-te 65.5 17 0.00036 25.7 4.3 50 596-645 16-67 (80)
394 KOG0687 26S proteasome regulat 65.5 1.2E+02 0.0026 28.5 15.5 21 598-618 193-213 (393)
395 KOG0545 Aryl-hydrocarbon recep 65.2 64 0.0014 28.8 8.7 102 558-660 185-304 (329)
396 KOG2063 Vacuolar assembly/sort 65.2 2.2E+02 0.0048 31.4 21.2 28 58-85 506-533 (877)
397 COG2909 MalT ATP-dependent tra 65.0 2.1E+02 0.0047 31.1 31.4 196 172-367 426-648 (894)
398 PF04910 Tcf25: Transcriptiona 64.5 1.5E+02 0.0032 29.0 19.2 55 421-475 110-165 (360)
399 KOG2066 Vacuolar assembly/sort 64.5 2E+02 0.0044 30.7 33.0 102 168-278 363-467 (846)
400 KOG4507 Uncharacterized conser 64.2 28 0.00062 35.2 7.2 87 460-547 618-704 (886)
401 PF10255 Paf67: RNA polymerase 64.0 40 0.00086 33.1 8.2 27 587-613 165-191 (404)
402 PF14853 Fis1_TPR_C: Fis1 C-te 63.9 37 0.00079 21.9 5.9 26 591-616 6-31 (53)
403 PF07720 TPR_3: Tetratricopept 63.6 17 0.00038 21.1 3.6 23 588-610 3-25 (36)
404 COG4259 Uncharacterized protei 63.3 58 0.0013 24.2 6.8 60 504-565 57-116 (121)
405 KOG1308 Hsp70-interacting prot 63.0 5.2 0.00011 37.1 2.1 91 68-161 126-217 (377)
406 COG5187 RPN7 26S proteasome re 62.9 1.3E+02 0.0027 27.8 13.8 105 519-625 115-231 (412)
407 KOG4642 Chaperone-dependent E3 62.5 1.2E+02 0.0025 27.2 11.0 78 282-363 26-104 (284)
408 PRK10941 hypothetical protein; 62.3 87 0.0019 28.9 9.7 65 488-553 185-250 (269)
409 PF12862 Apc5: Anaphase-promot 62.1 57 0.0012 24.1 7.2 53 495-547 9-69 (94)
410 PF07163 Pex26: Pex26 protein; 62.0 1.3E+02 0.0028 27.6 13.4 119 491-609 42-181 (309)
411 KOG4521 Nuclear pore complex, 61.6 1.5E+02 0.0033 33.3 12.3 121 487-613 986-1130(1480)
412 KOG0292 Vesicle coat complex C 61.5 2.5E+02 0.0054 30.7 20.5 40 623-662 1086-1125(1202)
413 KOG4077 Cytochrome c oxidase, 61.2 75 0.0016 24.9 7.4 41 473-513 73-113 (149)
414 KOG1308 Hsp70-interacting prot 60.1 7.8 0.00017 36.1 2.6 96 391-487 125-220 (377)
415 cd02680 MIT_calpain7_2 MIT: do 58.5 25 0.00054 24.7 4.3 15 564-578 19-33 (75)
416 KOG2300 Uncharacterized conser 57.6 2.1E+02 0.0046 28.7 37.4 159 391-553 334-520 (629)
417 PF07575 Nucleopor_Nup85: Nup8 57.5 73 0.0016 33.5 9.6 97 125-225 371-467 (566)
418 KOG4077 Cytochrome c oxidase, 57.2 87 0.0019 24.6 7.2 35 154-188 77-111 (149)
419 KOG4279 Serine/threonine prote 57.1 2.7E+02 0.0058 29.7 12.9 25 627-651 372-396 (1226)
420 KOG0376 Serine-threonine phosp 56.8 27 0.00058 34.4 5.7 104 28-136 12-115 (476)
421 PF14689 SPOB_a: Sensor_kinase 56.4 31 0.00067 23.1 4.4 30 586-615 23-52 (62)
422 PF09670 Cas_Cas02710: CRISPR- 56.3 1.2E+02 0.0025 30.0 10.2 57 421-478 138-198 (379)
423 KOG3807 Predicted membrane pro 56.2 1.8E+02 0.0039 27.4 11.4 23 201-223 316-338 (556)
424 PF12862 Apc5: Anaphase-promot 56.2 60 0.0013 24.1 6.5 59 348-410 9-71 (94)
425 smart00386 HAT HAT (Half-A-TPR 55.7 32 0.00069 18.6 4.2 29 34-64 1-29 (33)
426 PF04212 MIT: MIT (microtubule 55.0 51 0.0011 22.6 5.5 15 599-613 18-32 (69)
427 PF11846 DUF3366: Domain of un 55.0 47 0.001 28.9 6.7 31 89-119 142-172 (193)
428 TIGR02710 CRISPR-associated pr 54.1 2.1E+02 0.0045 28.0 11.0 52 423-474 139-196 (380)
429 COG0735 Fur Fe2+/Zn2+ uptake r 53.1 72 0.0016 26.1 7.0 59 474-533 11-69 (145)
430 PF08311 Mad3_BUB1_I: Mad3/BUB 53.1 1.1E+02 0.0025 24.2 10.5 42 398-439 81-124 (126)
431 KOG4279 Serine/threonine prote 52.5 3.2E+02 0.007 29.2 13.6 111 400-513 183-316 (1226)
432 COG0735 Fur Fe2+/Zn2+ uptake r 52.4 47 0.001 27.2 5.8 67 6-73 4-72 (145)
433 KOG3677 RNA polymerase I-assoc 52.4 1.7E+02 0.0037 28.6 9.8 61 58-118 237-299 (525)
434 cd02678 MIT_VPS4 MIT: domain c 52.0 59 0.0013 22.8 5.5 12 564-575 19-30 (75)
435 PF14669 Asp_Glu_race_2: Putat 51.8 1.6E+02 0.0034 25.4 14.8 57 488-544 136-206 (233)
436 PF11846 DUF3366: Domain of un 51.3 91 0.002 27.1 7.9 33 515-547 140-172 (193)
437 cd02683 MIT_1 MIT: domain cont 50.4 76 0.0016 22.5 5.8 12 564-575 19-30 (77)
438 PF11663 Toxin_YhaV: Toxin wit 50.0 22 0.00047 28.2 3.2 32 102-135 106-137 (140)
439 KOG0686 COP9 signalosome, subu 49.0 2.7E+02 0.0058 27.3 15.2 165 162-330 151-332 (466)
440 PF14689 SPOB_a: Sensor_kinase 48.2 60 0.0013 21.7 4.8 25 129-153 26-50 (62)
441 KOG0686 COP9 signalosome, subu 46.9 2.9E+02 0.0063 27.1 13.0 63 415-477 151-215 (466)
442 PRK12798 chemotaxis protein; R 46.6 3E+02 0.0065 27.2 21.2 185 427-617 125-326 (421)
443 PF12968 DUF3856: Domain of Un 46.6 1.4E+02 0.003 23.3 9.9 22 591-612 105-126 (144)
444 COG4941 Predicted RNA polymera 46.5 2.7E+02 0.0058 26.5 11.5 113 465-580 272-394 (415)
445 PF11848 DUF3368: Domain of un 45.8 74 0.0016 19.9 5.0 26 105-130 16-41 (48)
446 PF03745 DUF309: Domain of unk 45.7 85 0.0019 21.1 5.2 50 593-642 6-60 (62)
447 COG4259 Uncharacterized protei 45.2 1.3E+02 0.0028 22.5 6.6 40 572-611 58-97 (121)
448 PF00244 14-3-3: 14-3-3 protei 44.6 2.4E+02 0.0052 25.5 10.4 40 97-136 7-46 (236)
449 PF04190 DUF410: Protein of un 44.5 2.6E+02 0.0056 25.8 17.9 26 412-437 88-113 (260)
450 smart00804 TAP_C C-terminal do 43.8 55 0.0012 22.1 4.0 33 24-56 28-61 (63)
451 KOG0376 Serine-threonine phosp 43.6 52 0.0011 32.6 5.4 106 388-496 12-117 (476)
452 KOG2422 Uncharacterized conser 42.8 4E+02 0.0088 27.6 17.9 51 32-82 250-310 (665)
453 KOG2659 LisH motif-containing 42.4 2.5E+02 0.0054 25.0 10.0 100 480-579 22-131 (228)
454 KOG1839 Uncharacterized protei 41.6 4.2E+02 0.009 30.6 12.1 154 390-543 942-1123(1236)
455 PF00244 14-3-3: 14-3-3 protei 41.6 2.7E+02 0.0059 25.2 10.3 40 420-459 7-46 (236)
456 cd02681 MIT_calpain7_1 MIT: do 41.5 1.2E+02 0.0027 21.4 5.6 15 563-577 18-32 (76)
457 PF11817 Foie-gras_1: Foie gra 41.4 1.4E+02 0.0029 27.3 7.6 55 589-643 181-240 (247)
458 PF06957 COPI_C: Coatomer (COP 41.3 1.9E+02 0.004 28.8 8.7 26 593-618 307-332 (422)
459 cd02684 MIT_2 MIT: domain cont 41.3 1.1E+02 0.0024 21.6 5.4 12 564-575 19-30 (75)
460 KOG0292 Vesicle coat complex C 41.2 1.5E+02 0.0032 32.2 8.3 129 459-614 653-781 (1202)
461 PF09477 Type_III_YscG: Bacter 41.1 1.6E+02 0.0035 22.5 9.2 12 142-153 22-33 (116)
462 KOG1586 Protein required for f 40.6 2.7E+02 0.0059 25.0 20.9 17 461-477 166-182 (288)
463 KOG0403 Neoplastic transformat 40.0 3.9E+02 0.0085 26.6 27.3 24 340-363 348-371 (645)
464 PRK10564 maltose regulon perip 39.6 75 0.0016 29.5 5.5 29 235-263 261-289 (303)
465 cd08819 CARD_MDA5_2 Caspase ac 39.5 1.5E+02 0.0032 21.6 7.5 15 427-441 49-63 (88)
466 KOG0551 Hsp90 co-chaperone CNS 39.2 2.1E+02 0.0046 27.1 8.1 95 450-545 82-179 (390)
467 cd02682 MIT_AAA_Arch MIT: doma 38.8 1.4E+02 0.003 21.1 6.0 16 598-613 18-33 (75)
468 KOG2659 LisH motif-containing 38.6 2.9E+02 0.0062 24.7 10.8 108 435-546 14-130 (228)
469 PRK13184 pknD serine/threonine 38.4 6.3E+02 0.014 28.6 23.8 367 204-576 483-896 (932)
470 KOG4521 Nuclear pore complex, 38.4 6.6E+02 0.014 28.8 15.3 178 14-213 879-1071(1480)
471 PF11663 Toxin_YhaV: Toxin wit 37.8 30 0.00066 27.4 2.4 34 595-631 104-138 (140)
472 PF13934 ELYS: Nuclear pore co 37.7 3E+02 0.0066 24.7 17.5 141 479-636 74-216 (226)
473 cd00280 TRFH Telomeric Repeat 37.5 2.6E+02 0.0057 23.9 10.6 23 202-224 117-139 (200)
474 cd02656 MIT MIT: domain contai 37.1 1.3E+02 0.0029 21.0 5.5 12 600-611 20-31 (75)
475 KOG2908 26S proteasome regulat 36.9 3.8E+02 0.0083 25.6 11.9 106 400-505 58-178 (380)
476 PF09454 Vps23_core: Vps23 cor 36.8 1E+02 0.0022 21.0 4.4 48 229-277 6-53 (65)
477 PRK10564 maltose regulon perip 36.3 79 0.0017 29.4 5.1 36 452-487 260-295 (303)
478 cd08819 CARD_MDA5_2 Caspase ac 36.0 1.7E+02 0.0037 21.3 7.2 14 210-223 50-63 (88)
479 PRK12798 chemotaxis protein; R 36.0 4.5E+02 0.0097 26.1 23.5 71 485-555 258-331 (421)
480 PF09868 DUF2095: Uncharacteri 34.9 1.5E+02 0.0032 22.8 5.3 37 25-63 66-102 (128)
481 KOG0551 Hsp90 co-chaperone CNS 34.5 3.5E+02 0.0076 25.8 8.7 96 414-511 81-180 (390)
482 smart00745 MIT Microtubule Int 34.3 1.5E+02 0.0033 20.7 5.5 15 564-578 21-35 (77)
483 TIGR02710 CRISPR-associated pr 34.0 4.7E+02 0.01 25.7 10.3 54 456-509 137-196 (380)
484 PHA02537 M terminase endonucle 34.0 3.5E+02 0.0076 24.3 11.6 23 459-481 93-115 (230)
485 KOG4567 GTPase-activating prot 33.3 2.8E+02 0.006 26.1 7.8 71 216-291 263-343 (370)
486 COG5108 RPO41 Mitochondrial DN 33.3 2.9E+02 0.0063 29.0 8.7 74 384-460 32-114 (1117)
487 cd02679 MIT_spastin MIT: domai 33.1 92 0.002 22.2 4.0 14 564-577 21-34 (79)
488 PF09868 DUF2095: Uncharacteri 32.9 1.9E+02 0.0041 22.2 5.6 36 97-133 67-102 (128)
489 cd02677 MIT_SNX15 MIT: domain 32.1 1.4E+02 0.0029 21.1 4.7 12 600-611 20-31 (75)
490 PF11817 Foie-gras_1: Foie gra 32.0 3.1E+02 0.0067 25.0 8.4 22 271-292 183-204 (247)
491 PRK09462 fur ferric uptake reg 32.0 2.4E+02 0.0053 23.1 7.1 64 470-533 3-66 (148)
492 COG4715 Uncharacterized conser 31.9 5.9E+02 0.013 26.3 19.0 90 96-190 308-399 (587)
493 COG5187 RPN7 26S proteasome re 30.7 4.5E+02 0.0097 24.5 13.0 24 450-473 116-139 (412)
494 COG4976 Predicted methyltransf 30.6 1E+02 0.0022 27.3 4.6 57 29-87 4-60 (287)
495 PF10366 Vps39_1: Vacuolar sor 30.5 2.5E+02 0.0054 21.5 6.8 27 58-84 41-67 (108)
496 PF10516 SHNi-TPR: SHNi-TPR; 30.2 1.2E+02 0.0027 17.9 3.7 27 588-614 3-29 (38)
497 COG5108 RPO41 Mitochondrial DN 30.2 3.9E+02 0.0085 28.1 9.0 90 61-153 33-130 (1117)
498 COG4976 Predicted methyltransf 30.0 1.5E+02 0.0032 26.4 5.3 57 459-516 5-61 (287)
499 KOG4567 GTPase-activating prot 29.6 4.8E+02 0.011 24.6 9.2 87 111-206 263-359 (370)
500 KOG0530 Protein farnesyltransf 29.6 4.5E+02 0.0097 24.2 20.3 130 391-523 54-185 (318)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=6.1e-73 Score=609.68 Aligned_cols=607 Identities=18% Similarity=0.209 Sum_probs=539.4
Q ss_pred cCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHH
Q 006071 17 LVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEV 96 (662)
Q Consensus 17 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 96 (662)
.++..+.+.++..+.+.|++++|+.+|+.+.+.+ ++|+..+|..++..|.+.+....+.+++..+.+.+..++..+++.
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~ 126 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELR-VPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA 126 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence 4455567889999999999999999999998877 789999999999999999999999999999999888889999999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006071 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLK 176 (662)
Q Consensus 97 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 176 (662)
++..|++.|+++.|.++|+.|.+ ||..+|+.+|.+|++.|++++|+++|++|...|+.||..||+.++.+|+..++
T Consensus 127 li~~~~~~g~~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~ 202 (857)
T PLN03077 127 MLSMFVRFGELVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPD 202 (857)
T ss_pred HHHHHHhCCChHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccc
Confidence 99999999999999999999974 89999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 177 LETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDE 256 (662)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (662)
++.+.+++..+.+.|+.||..+++.++.+|++.|+++.|.++|++|. .||..+||+++.+|++.|++++|+++|.+
T Consensus 203 ~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~ 278 (857)
T PLN03077 203 LARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFT 278 (857)
T ss_pred hhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 36889999999999999999999999999
Q ss_pred HhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 006071 257 MKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTE 336 (662)
Q Consensus 257 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 336 (662)
|...|+.||..||+.++.+|++.|+.+.+.+++..+.+.|+.| |..+++.++.+|++.|+++.|.++|++|. .||
T Consensus 279 M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 9999999999999999999999999999999999999999988 99999999999999999999999999985 478
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHH
Q 006071 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPV 415 (662)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~ 415 (662)
..+|+.++.+|++.|++++|+++|++| ...++.||..+|+.++.+|++.|+.+.|.++++.+.+.+ .++..
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M--------~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~ 425 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALM--------EQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHH--------HHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchH
Confidence 889999999999999999999999999 445677899999999999999999999999999999988 78888
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (662)
+++.|+.+|++.|++++|.++|+.|.+ +|..+|+.++.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|.
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~ 500 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACA 500 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHh
Confidence 999999999999999999999988865 4777888888888888888888888888876 57788887777776666
Q ss_pred hcCCHHHHHHHHHHHHHcCC------------------------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 496 EDGRVQTASRVMKSMVEKGV------------------------------KENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
+.|+.+.+.+++..+.+.|+ .+|..+|+.++.+|.+.|+.++|+++|++|
T Consensus 501 ~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M 580 (857)
T PLN03077 501 RIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRM 580 (857)
T ss_pred hhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555555555444333 567888999999999999999999999999
Q ss_pred HhCCCCCC---HHHHHHHHhccCCHHHHHHHHHHHh-cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 006071 546 MQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCL-GRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDW 621 (662)
Q Consensus 546 ~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 621 (662)
.+.|+.|+ +..++.+|.+.|++++|.++|+.+. +.+..|+..+|..++++|.+.|++++|.+++++|. ..|+.
T Consensus 581 ~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~ 657 (857)
T PLN03077 581 VESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDP 657 (857)
T ss_pred HHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCH
Confidence 99999999 4557888899999999999999988 56788899999999999999999999999999984 45678
Q ss_pred hhHHHHHHHHHhcCCcchhHHHHHHhhhhccc
Q 006071 622 KSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (662)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (662)
..|..|+.+|..+|+.+.|+.+.+.+.+..+.
T Consensus 658 ~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~ 689 (857)
T PLN03077 658 AVWGALLNACRIHRHVELGELAAQHIFELDPN 689 (857)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence 88888999999999999988777776655443
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.4e-71 Score=597.34 Aligned_cols=594 Identities=18% Similarity=0.238 Sum_probs=549.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
.+.++..+.+.|+++.|.++|+.|. +++..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+|+
T Consensus 124 ~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~ 198 (857)
T PLN03077 124 GNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198 (857)
T ss_pred HHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhC
Confidence 4667777888899999999998884 46788999999999999999999999999988899999999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
..+++..+.+++..+.+.|+.|++.+++.++.+|++.|+++.|..+|++|. .||..+|+.+|.+|++.|++++|..
T Consensus 199 ~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~ 274 (857)
T PLN03077 199 GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLE 274 (857)
T ss_pred CccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999984 5788999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 262 (662)
+|++|...|+.||..+|+.++.+|++.|+.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.
T Consensus 275 lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---- 350 (857)
T PLN03077 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME---- 350 (857)
T ss_pred HHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 263 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
.||..+|+.++.+|++.|++++|.++|++|.+.|+.| |..++..++.+|++.|+++.|.++++.+.+.|+.++..+++.
T Consensus 351 ~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~P-d~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~ 429 (857)
T PLN03077 351 TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSP-DEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429 (857)
T ss_pred CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCC-CceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 5788999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
++.+|++.|++++|.++|++| .. +|..+|+.++.+|++.|+.++|..+|++|.....||..+|+.++.
T Consensus 430 Li~~y~k~g~~~~A~~vf~~m--------~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~ 497 (857)
T PLN03077 430 LIEMYSKCKCIDKALEVFHNI--------PE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALS 497 (857)
T ss_pred HHHHHHHcCCHHHHHHHHHhC--------CC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHH
Confidence 999999999999999999998 33 578899999999999999999999999998766999999999999
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (662)
+|++.|+++.+.+++..+.+.|+.++..+++.++.+|++.|++++|..+|+.+ .||..+|+.++.+|.+.|+.++
T Consensus 498 a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~ 572 (857)
T PLN03077 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSM 572 (857)
T ss_pred HHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999987 5899999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-hCCCCCC---HHHHHHHHhccCCHHHHHHHHHHHh
Q 006071 503 ASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM-QSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCL 578 (662)
Q Consensus 503 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~ 578 (662)
|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|. ..++.|+ +..++++|++.|++++|.++++++
T Consensus 573 A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m- 651 (857)
T PLN03077 573 AVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM- 651 (857)
T ss_pred HHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC-
Confidence 99999999999999999999999999999999999999999999 5899998 456899999999999999999976
Q ss_pred cCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhc
Q 006071 579 GRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (662)
Q Consensus 579 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (662)
...|+...|..++.+|...|+.+.+....+++.+.. +.+...|..|...|...|+|++|..+.+.++..+
T Consensus 652 --~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~-p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g 721 (857)
T PLN03077 652 --PITPDPAVWGALLNACRIHRHVELGELAAQHIFELD-PNSVGYYILLCNLYADAGKWDEVARVRKTMRENG 721 (857)
T ss_pred --CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC-CCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcC
Confidence 257889999999999999999999988888887653 3466677778899999999999988877776543
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.3e-67 Score=554.85 Aligned_cols=520 Identities=17% Similarity=0.295 Sum_probs=490.0
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 99 (662)
...+..++..+.+.|++++|+++|++|.+.+.++++...+..++..|.+.|..++|..+++.|.. |+..+|+.++.
T Consensus 370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~ 445 (1060)
T PLN03218 370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMS 445 (1060)
T ss_pred chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHH
Confidence 34467778888899999999999999999886678888899999999999999999999999975 79999999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006071 100 SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLET 179 (662)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 179 (662)
+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 180 AIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE--KNIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (662)
Q Consensus 180 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (662)
|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999986 678999999999999999999999999999999
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 006071 258 KSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEA 337 (662)
Q Consensus 258 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (662)
.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.| |..+|+.++.+|++.|++++|.+++++|.+.|+.|+.
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~P-D~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKP-DEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHHH
Q 006071 338 GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVA 416 (662)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 416 (662)
.+|+.++.+|++.|++++|.++|++| ...+..||..+|+.++.+|++.|++++|.++|+.|...+ .||..+
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM--------~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDI--------KSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH--------HHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 99999999999999999999999999 445678999999999999999999999999999999998 899999
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----c-------------------CChHHHHHHHH
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----K-------------------GEPADAKTALD 473 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------~~~~~a~~~~~ 473 (662)
|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.++..|.+ + +..+.|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999876442 1 22467999999
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 006071 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
+|++.|+.||..||+.++..+...+....+..+++.+...+..|+..+|+.++.++.+. .++|+.++++|...|+.|+
T Consensus 837 eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~ 914 (1060)
T PLN03218 837 ETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPS 914 (1060)
T ss_pred HHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999988888899999999999888778888999999999988432 4689999999999999998
Q ss_pred H
Q 006071 554 F 554 (662)
Q Consensus 554 ~ 554 (662)
+
T Consensus 915 ~ 915 (1060)
T PLN03218 915 V 915 (1060)
T ss_pred c
Confidence 5
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.7e-65 Score=538.88 Aligned_cols=542 Identities=17% Similarity=0.253 Sum_probs=353.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGV-QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
++...|..++..|++.|++++|.++|+.|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4455566666666666666666666666666653 34555556666666666666666666666653 666666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS--FDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 290 (662)
++|.++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666654 4566666666666666666666666666666
Q ss_pred HHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhc
Q 006071 291 EMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIIL 370 (662)
Q Consensus 291 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 370 (662)
.|.+.++.| +..+|+.++.+|++.|++++|..+|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|
T Consensus 604 ~M~e~gi~p-~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM------- 675 (1060)
T PLN03218 604 MIHEYNIKG-TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDA------- 675 (1060)
T ss_pred HHHHcCCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-------
Confidence 666666666 666666666666666666666666666666666666666666666666666666666666666
Q ss_pred cCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 006071 371 RPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449 (662)
Q Consensus 371 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 449 (662)
...+..|+..+|+.++.+|++.|++++|.++|+.|...+ .|+..+|+.++.+|++.|++++|.++|++|...|+.||.
T Consensus 676 -~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~ 754 (1060)
T PLN03218 676 -RKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT 754 (1060)
T ss_pred -HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 334456666666666666666666666666666666655 566666666666666666666666666666666666666
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
.+|+.++.+|++.|++++|..++++|.+.|+.||..+++.++..|. +.++++..+.+.+...+. ....
T Consensus 755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~~----------g~~~ 822 (1060)
T PLN03218 755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFDS----------GRPQ 822 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhhc----------cccc
Confidence 6666666666666666666666666666666666666666665443 134444433333222110 0001
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 006071 530 LMRGHVEEALGRIDLMMQSGSVPNFD---SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAY 606 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 606 (662)
...+..++|+.+|++|.+.|+.|+.. .++..++..+..+.+..+++.....+..++...|+.+++++.+. .++|+
T Consensus 823 ~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~ 900 (1060)
T PLN03218 823 IENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAF 900 (1060)
T ss_pred cccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHH
Confidence 11123467888888888888888844 34555556777788888887666666666777888888877322 36788
Q ss_pred HHHHHHHHcCCCCcHh
Q 006071 607 SILFKIMEKGGVTDWK 622 (662)
Q Consensus 607 ~~~~~~~~~~~~~~~~ 622 (662)
.+++.|...|..|++.
T Consensus 901 ~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 901 SLLEEAASLGVVPSVS 916 (1060)
T ss_pred HHHHHHHHcCCCCCcc
Confidence 8888888888777654
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.3e-60 Score=498.60 Aligned_cols=474 Identities=17% Similarity=0.253 Sum_probs=448.5
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKG-VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
.+...|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||+.+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345589999999999999999999999998764 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
+.+|++.|+++.|.++|++|. .||..+|+.++.+|++.|++++|..+|++|.+.|+.|+..+|+.++.+|+..|..
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 999999999999999999994 5899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 292 (662)
+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999996 568999999999999999999999999999
Q ss_pred HHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccC
Q 006071 293 VERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRP 372 (662)
Q Consensus 293 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 372 (662)
.+.|+.| |..+|+.++.+|++.|+++.|.+++..+.+.|++|+..+++.++.+|++.|++++|.++|++| .
T Consensus 317 ~~~g~~p-d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m--------~ 387 (697)
T PLN03081 317 RDSGVSI-DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM--------P 387 (697)
T ss_pred HHcCCCC-CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhC--------C
Confidence 9999999 999999999999999999999999999999999999999999999999999999999999998 3
Q ss_pred CCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-CCCCCCHH
Q 006071 373 QSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-RGVPRDAD 450 (662)
Q Consensus 373 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~ 450 (662)
. ||..+|+.++.+|++.|+.++|.++|++|.+.+ .||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..
T Consensus 388 ~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~ 463 (697)
T PLN03081 388 R----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM 463 (697)
T ss_pred C----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc
Confidence 2 688999999999999999999999999999999 99999999999999999999999999999986 69999999
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
+|+.++.+|++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+.++. +..+|..++..|.
T Consensus 464 ~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~-~~~~y~~L~~~y~ 539 (697)
T PLN03081 464 HYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE-KLNNYVVLLNLYN 539 (697)
T ss_pred chHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC-CCcchHHHHHHHH
Confidence 9999999999999999999999876 78899999999999999999999999999999765543 5678999999999
Q ss_pred hCCCHHHHHHHHHHHHhCCCCC
Q 006071 531 MRGHVEEALGRIDLMMQSGSVP 552 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p 552 (662)
+.|++++|.++++.|.+.|+..
T Consensus 540 ~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 540 SSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred hCCCHHHHHHHHHHHHHcCCcc
Confidence 9999999999999999988753
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=4.7e-60 Score=497.47 Aligned_cols=587 Identities=14% Similarity=0.214 Sum_probs=494.8
Q ss_pred CChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHH
Q 006071 21 FDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIES 100 (662)
Q Consensus 21 ~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 100 (662)
..+..++..+.+.|++++|+++|+++...+++.|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+++.++..
T Consensus 88 ~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~ 167 (697)
T PLN03081 88 VSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLM 167 (697)
T ss_pred eeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 36778888899999999999999999887667899999999999999999999999999999999999999999999999
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHH
Q 006071 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETA 180 (662)
Q Consensus 101 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 180 (662)
|.+.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|+.++.+|+..|..+.+
T Consensus 168 y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 168 HVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 9999999999999999974 899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006071 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (662)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (662)
.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. +|..+|+.++.+|++.|++++|.++|++|...
T Consensus 244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999964 59999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 006071 261 DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (662)
Q Consensus 261 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (662)
|+.||..||+.++.+|++.|++++|.+++..|.+.|+.| |..+++.++.+|++.|+++.|.++|++|. .+|..+|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~ 394 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISW 394 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeH
Confidence 999999999999999999999999999999999999988 99999999999999999999999999986 4789999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhc-C-CCCHHHHH
Q 006071 341 GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK-G-VLDPVAFN 418 (662)
Q Consensus 341 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~ 418 (662)
+.+|.+|++.|+.++|+++|++|. ..++.||..||+.++.+|++.|.+++|.++|+.|.+. + .|+..+|+
T Consensus 395 n~lI~~y~~~G~~~~A~~lf~~M~--------~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~ 466 (697)
T PLN03081 395 NALIAGYGNHGRGTKAVEMFERMI--------AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYA 466 (697)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH--------HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchH
Confidence 999999999999999999999994 4567899999999999999999999999999999874 5 89999999
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhc
Q 006071 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFED 497 (662)
Q Consensus 419 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 497 (662)
+++.+|++.|++++|.++++.| ++.|+..+|+.++.+|...|+++.|..+++++.+ +.|+ ..+|..++..|.+.
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~ 541 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSS 541 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhC
Confidence 9999999999999999998876 4679999999999999999999999999999974 4564 67899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHH-HHHHHH---HHHH----hCCC----HHHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 006071 498 GRVQTASRVMKSMVEKGVKENLD-LVAKIL---EALL----MRGH----VEEALGRIDLMMQSGSVPNFDSLLSVLSEKG 565 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~---~~~~----~~g~----~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g 565 (662)
|++++|.++++.|.+.|+...+. +|..+. ..+. .+.+ ++...++..+|.+.|+.|+...+..-... .
T Consensus 542 G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~~~~~-~ 620 (697)
T PLN03081 542 GRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDE-D 620 (697)
T ss_pred CCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhccccH-H
Confidence 99999999999999998754322 221110 0000 0111 24445677788889999986544321111 0
Q ss_pred CHHHHHHHHH--HHhcCC---CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHhcCC
Q 006071 566 KTIAAVKLLD--FCLGRD---CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEGN 636 (662)
Q Consensus 566 ~~~~A~~~~~--~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~ 636 (662)
..++.+.... .++.-+ .++... ..+...+.-.|+-..|.+++.++...... .|..-+-|.-.+-+.+|+
T Consensus 621 ~~~~~~~~hsekla~a~~l~~~~~~~~--i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~g~csc~d 695 (697)
T PLN03081 621 EEKVSGRYHSEKLAIAFGLINTSEWTP--LQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKLGKCSCGD 695 (697)
T ss_pred HHHHHHHhccHHHHHHhhCccCCCCCe--EEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCCCcccccc
Confidence 1111111110 011111 011111 01233444568888888888887765422 233334444444444443
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=2.4e-38 Score=351.94 Aligned_cols=593 Identities=15% Similarity=0.121 Sum_probs=486.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+..++...|++++|...|+.+.+.. |.+...+..+..++...|++++|...++.+....+ .+...+..+...+.+.|
T Consensus 301 ~~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 377 (899)
T TIGR02917 301 AGASEYQLGNLEQAYQYLNQILKYA--PNSHQARRLLASIQLRLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALG 377 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCC
Confidence 3345567778888888888777765 56677777777888888888888888888776543 36677788888888888
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+.++. .......++..+.+.|++++|..+++
T Consensus 378 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~ 455 (899)
T TIGR02917 378 DFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAK 455 (899)
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHH
Confidence 8888888888887654 345667777778888888888888888888765432 33445556677888888888888888
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006071 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (662)
.+... .+.+..++..+..++...|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+.+...+ +.+
T Consensus 456 ~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~ 532 (899)
T TIGR02917 456 KLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKN 532 (899)
T ss_pred HHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCc
Confidence 88765 34477788888899999999999999999988753 4456677888888999999999999999988764 556
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006071 266 AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIE 345 (662)
Q Consensus 266 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 345 (662)
..++..+...+...|+.++|..+++++... .|.+...+..++..+...|+++.|..+++.+.+.. +.+...|..+..
T Consensus 533 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 609 (899)
T TIGR02917 533 LRAILALAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGR 609 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHH
Confidence 778888888899999999999999998775 45577888889999999999999999999988754 667788999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 346 NFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 346 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
.|...|++++|+..|+.+.+.. + .+...+..+..++...|++++|...++++.+..+.+..++..++..+.
T Consensus 610 ~~~~~~~~~~A~~~~~~~~~~~----~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 610 AQLAAGDLNKAVSSFKKLLALQ----P-----DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC----C-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999999999999999986543 1 244567888888999999999999999999988888999999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 505 (662)
..|++++|..+++.+...+ +.+...+..+...+...|++++|...++.+...+ |+..++..+...+...|++++|.+
T Consensus 681 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~ 757 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVK 757 (899)
T ss_pred HcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998875 4477888889999999999999999999998754 555777888889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCC
Q 006071 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
.++.+.+..+. +...+..++..|...|++++|++.|+++.+. .|+ ...++..+...|+ .+|+.+++++++..
T Consensus 758 ~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 758 TLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 99999987655 7888888999999999999999999999873 344 3456777888888 88999999999876
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHh
Q 006071 582 CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
+. ++..+..++.++...|++++|.++++++++..+. +...+..++.++.+.|++++|..+.+.+
T Consensus 834 ~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 834 PN-IPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 43 4556678999999999999999999999997654 7788889999999999999997766654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.6e-36 Score=337.38 Aligned_cols=592 Identities=16% Similarity=0.085 Sum_probs=418.9
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHH
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQES 110 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 110 (662)
...|++++|+..|+.+.+.+ |.....+..+..++...|++++|...++.+.+..+ .+...+..+...+...|++++|
T Consensus 272 ~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A 348 (899)
T TIGR02917 272 FQKKNYEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEA 348 (899)
T ss_pred HHhcCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHH
Confidence 34556666666666655544 33344444455555666666666666666655432 2455556666666666777777
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 111 VKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
...++.+.... +.+...+..+...+.+.|++++|.++|+++.+.. +.+...+..+...+...|++++|...++.+.+.
T Consensus 349 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 349 IATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 77766666543 3455566666667777777777777777766543 224455556666666677777777777766655
Q ss_pred CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006071 191 GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270 (662)
Q Consensus 191 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (662)
... .......++..+.+.|++++|..+++.+... .+++..++..+...+...|++++|...|+++.+.. +.+...+.
T Consensus 427 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 503 (899)
T TIGR02917 427 DPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAA 503 (899)
T ss_pred CCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHH
Confidence 322 3344455666677777777777777777654 34566677777777888888888888887776643 34555666
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (662)
.+...+...|++++|...++++... .|.+..++..+...+.+.|+.++|...++++...+ +.+...+..++..|...
T Consensus 504 ~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 580 (899)
T TIGR02917 504 NLARIDIQEGNPDDAIQRFEKVLTI--DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK 580 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC
Confidence 7777777788888888888877765 45567777777788888888888888888776654 45566677777888888
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (662)
|++++|..+++.+.+.. +.+...|..+..++...|++++|...|+.+.+..+.++..+..+..++...|++
T Consensus 581 ~~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 581 GQLKKALAILNEAADAA---------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY 651 (899)
T ss_pred CCHHHHHHHHHHHHHcC---------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH
Confidence 88888888888775432 234567788888888888888888888888887777888888888888888888
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (662)
++|..+++.+.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...++.+
T Consensus 652 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888887754 3367788888888888888888888888887654 345666777778888888899998888888
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCh
Q 006071 511 VEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDL 586 (662)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 586 (662)
...++.+ ..+..++.++...|++++|.+.++++.+. .|+ ...++..+...|++++|..+++++++..+ .++
T Consensus 730 ~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p-~~~ 804 (899)
T TIGR02917 730 LKRAPSS--QNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAP-DNA 804 (899)
T ss_pred HhhCCCc--hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCC-CCH
Confidence 8775543 56667888888888999998888888762 333 23456677788999999999998888763 456
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhc
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEM 651 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (662)
..+..+++.+...|+ .+|+++++++..... .+...+..+..++...|++++|....+.+.+..
T Consensus 805 ~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 805 VVLNNLAWLYLELKD-PRALEYAEKALKLAP-NIPAILDTLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHHHHhcCc-HHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777788888888888 779999998887643 344556678888899999999965555444443
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=1e-29 Score=281.10 Aligned_cols=431 Identities=13% Similarity=0.080 Sum_probs=327.3
Q ss_pred HHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC-CHHHH------------
Q 006071 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP-NAVTY------------ 269 (662)
Q Consensus 203 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~------------ 269 (662)
...+...|++++|+..|++..... +.+...+..+..++.+.|++++|+..|++..+..-.. ....|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 455677899999999999998763 4477889999999999999999999999988753111 11111
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 006071 270 TALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK 349 (662)
Q Consensus 270 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 349 (662)
......+...|++++|...|+++++. .|.+...+..+..++...|++++|...|+++.+.. +.+...+..+...|.
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-
Confidence 12244667899999999999999986 67788889999999999999999999999998864 455666666777764
Q ss_pred CCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 006071 350 AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429 (662)
Q Consensus 350 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 429 (662)
.++.++|+.+++.+...................+..+...+...|++++|...|+++.+..|.++.++..+...|...|+
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 46789999888765322100000000001122355567778889999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH---------hHHHHHHHHHhcCCH
Q 006071 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS---------LFRSVMESLFEDGRV 500 (662)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~ 500 (662)
+++|...++.+.+.. +.+...+..+...+...+++++|+..++.+......++.. .+......+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 999999999998754 3356666666667788999999999998764322222211 123445678889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHH
Q 006071 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~ 576 (662)
++|..+++ ..+ .+...+..+...+.+.|++++|++.++++++ ..|+ ...++.++...|++++|++.+++
T Consensus 590 ~eA~~~l~----~~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 590 AEAEALLR----QQP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HHHHHHHH----hCC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999887 222 3556677799999999999999999999998 4455 23467778889999999999998
Q ss_pred HhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----cHhhHHHHHHHHHhcCCcchhHHHHHHh
Q 006071 577 CLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT-----DWKSSDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
+++..+ .+...+..++.++...|++++|.+.+++++...... ....+..+...+...|++++|....+..
T Consensus 663 ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 663 LPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred HhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 887643 344556678999999999999999999998754321 2245566788899999999996665544
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=100.00 E-value=3e-28 Score=269.46 Aligned_cols=599 Identities=12% Similarity=0.067 Sum_probs=438.4
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHH------------
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMF------------ 94 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------------ 94 (662)
.+.....++.+.|.+.++++.... |.++.++..++.++.+.|+.++|.+.++++.+..+. +....
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~--p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELID--PNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCc
Confidence 336668899999999999999887 889999999999999999999999999999887644 33322
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHh-HHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 95 ----EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKS-YDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 95 ----~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
..+...+...|++++|.+.|+.+.+.+ +++... ...........|++++|+..++++.+.. +.+...+..+..
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 333456888999999999999998754 344321 1111222234599999999999998874 336667778888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC--HH-----------------HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLD--VV-----------------TYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT 230 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~-----------------~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 230 (662)
.+...|+.++|+..++++........ .. .+...+..+-.....+.|...+.........|.
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 89999999999999999876421100 01 111112222222234455556655543322232
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHH-----
Q 006071 231 VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVF----- 305 (662)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----- 305 (662)
.. .......+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|+..|++..+..........+
T Consensus 270 ~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 270 FR-ARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred hH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 22 1234567788999999999999998763 4477889999999999999999999999998853221111111
Q ss_pred -------HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006071 306 -------MKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (662)
Q Consensus 306 -------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (662)
......+.+.|++++|...|+++.... +.+...+..+...+...|++++|++.|+++++.. + .
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p-----~ 417 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----P-----G 417 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----C-----C
Confidence 223456778999999999999999874 5567778888999999999999999999997653 2 1
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCC---------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV---------LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA 449 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 449 (662)
+...+..+...+. .++.++|..+++.+....+ .....+..+...+...|++++|.+.+++..+..+. +.
T Consensus 418 ~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~ 495 (1157)
T PRK11447 418 NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SV 495 (1157)
T ss_pred CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH
Confidence 2345556666664 4678999988876543321 11234556778888999999999999999986533 67
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------H
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL---------D 520 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~ 520 (662)
..+..+...|.+.|++++|...++++.+.. +.+...+..+...+...|+.++|...++.+......++. .
T Consensus 496 ~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~ 574 (1157)
T PRK11447 496 WLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSD 574 (1157)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhh
Confidence 788889999999999999999999998643 223444444555667889999999999886543222222 1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhc
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 599 (662)
.+......+...|++++|+++++ ..+..|. ...+...+.+.|++++|+..++++++..|. +...+..++.+|...
T Consensus 575 ~~l~~a~~l~~~G~~~eA~~~l~---~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 575 QVLETANRLRDSGKEAEAEALLR---QQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHH---hCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHC
Confidence 22345678899999999999987 2233333 345777888999999999999999998654 456667899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhh
Q 006071 600 GKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
|++++|++.+++++.... .+...+..+..++...|++++|..+.+.+...
T Consensus 651 g~~~eA~~~l~~ll~~~p-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~ 700 (1157)
T PRK11447 651 GDLAAARAQLAKLPATAN-DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQ 700 (1157)
T ss_pred CCHHHHHHHHHHHhccCC-CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhh
Confidence 999999999999886532 34555667888999999999997777776654
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.98 E-value=7.5e-25 Score=230.72 Aligned_cols=581 Identities=14% Similarity=0.084 Sum_probs=384.5
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
..|++++|+..|+.+++.. |.++.++..++++|...|++++|+..+++..+.++. |...+..+ ..+ +++.+|.
T Consensus 56 ~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~-n~~~~~~L-a~i---~~~~kA~ 128 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPG-DARLERSL-AAI---PVEVKSV 128 (987)
T ss_pred hCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-cHHHHHHH-HHh---ccChhHH
Confidence 4599999999999999998 788999999999999999999999999999987542 44444444 222 8999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHH--------HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHhcCCHHHHHH
Q 006071 112 KIFDIMKQLGVERSVKSYDALFKL--------ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSLKLETAIR 182 (662)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~ 182 (662)
.+++++.... +-+...+..+... |.+. ++|.+.++ .....+.|+..+.... ...|...+++++|+.
T Consensus 129 ~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 129 TTVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 9999999865 3445566555555 5555 44554444 3333344455555555 889999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhh-cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNR-FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (662)
++.++.+.++. +..-...|..+|.. .++ +.+..+++.. ++.+...+..++..|.+.|+.++|.++++++...-
T Consensus 204 lL~~L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~ 277 (987)
T PRK09782 204 LYNEARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLF 277 (987)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence 99999998644 56667777778887 466 7888876542 33588899999999999999999999999986432
Q ss_pred C-CCCHHHHHHH------------------------------HHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHH
Q 006071 262 V-KPNAVTYTAL------------------------------LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLG 310 (662)
Q Consensus 262 ~-~~~~~~~~~l------------------------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (662)
. .|...+|... +..+.+.++++.++++.. ..|.++. ...-..
T Consensus 278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~-~~~r~~ 350 (987)
T PRK09782 278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEM-LEERYA 350 (987)
T ss_pred cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchH-HHHHHh
Confidence 1 1333333222 333445555554443311 2443332 111111
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHH
Q 006071 311 VQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHL 390 (662)
Q Consensus 311 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 390 (662)
.....+...++...+..+.+.. +.+......+.-...+.|+.++|..+|+...... .+ ..++.....-++..|
T Consensus 351 ~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~----~~--~~~~~~l~~~l~~~~ 423 (987)
T PRK09782 351 VSVATRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ----GD--ARLSQTLMARLASLL 423 (987)
T ss_pred hccccCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC----cc--cccCHHHHHHHHHHH
Confidence 2223355566666666665542 4455555556666677888888888888775421 11 112222333455555
Q ss_pred HhcCC---hhHH-------------------------HHHHHHHHhcCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 391 CHNGQ---TGKA-------------------------EIFFRQLMKKGVL--DPVAFNNLIRGHSKEGNPDSAFEIVKIM 440 (662)
Q Consensus 391 ~~~~~---~~~a-------------------------~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 440 (662)
...+. ..++ ...+..+....++ ++..+..+..++.. +++++|...+...
T Consensus 424 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~A 502 (987)
T PRK09782 424 ESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQA 502 (987)
T ss_pred HhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHH
Confidence 54443 1122 2222233333345 67777777777766 7777888877776
Q ss_pred hhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006071 441 GRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLD 520 (662)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 520 (662)
.... |+......+...+...|++++|...++++... +|+...+..+..++...|++++|...++.+++.++. +..
T Consensus 503 l~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~ 577 (987)
T PRK09782 503 EQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNA 577 (987)
T ss_pred HHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHH
Confidence 6643 45444444455556788888888888887643 344445556666777888888888888888776543 333
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALL 597 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 597 (662)
.+..+...+...|++++|+..+++.++ ..|+ ...++.++.+.|+.++|+..+++++...|. +...+..++.++.
T Consensus 578 l~~~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~ 654 (987)
T PRK09782 578 LYWWLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALW 654 (987)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 333444455566888888888888876 3344 234556677788888888888888887633 4455667888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhcccc
Q 006071 598 AAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRG 654 (662)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 654 (662)
..|++++|++.+++.+...+ .+...+..+..++...|++++|+...+.........
T Consensus 655 ~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~ 710 (987)
T PRK09782 655 DSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ 710 (987)
T ss_pred HCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence 88888888888888877643 356667778888888888888876666655555444
No 12
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2.1e-24 Score=211.88 Aligned_cols=580 Identities=14% Similarity=0.104 Sum_probs=443.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006071 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKI 113 (662)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 113 (662)
.+.+.|.+.|..+++.+ |++...+..-+.+....|++..|..+|+.+....+..-+.....+..++.+.|+.+.|+..
T Consensus 144 ~~~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a 221 (1018)
T KOG2002|consen 144 KSMDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLA 221 (1018)
T ss_pred ccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHH
Confidence 34799999999999998 8888888777788888999999999999966654433333444455677899999999999
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 114 FDIMKQLGVERSVKSYDALFKLILRRGR---YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 114 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
|.+..+.+ |.++.++..|...-....+ +..+..++....... .-++...+.|...|.-.|+++.+..+...+...
T Consensus 222 ~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~ 299 (1018)
T KOG2002|consen 222 FERALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKN 299 (1018)
T ss_pred HHHHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHh
Confidence 99999865 2344455444444333333 556667766665543 347788889999999999999999999998875
Q ss_pred CCC--CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH
Q 006071 191 GIS--LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA 266 (662)
Q Consensus 191 ~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 266 (662)
... .-...|-.+..+|-..|++++|...|.+..+.. ++ +..+.-+...|++.|+.+.+...|+.+.... +.+.
T Consensus 300 t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~ 376 (1018)
T KOG2002|consen 300 TENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNY 376 (1018)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchH
Confidence 321 124568889999999999999999998887753 33 3455678899999999999999999998762 4556
Q ss_pred HHHHHHHHHHHhCC----CHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH----hCCCCCChh
Q 006071 267 VTYTALLPGLCDAG----KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI----RLSIPTEAG 338 (662)
Q Consensus 267 ~~~~~ll~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 338 (662)
.+...+...|...+ ..+.|..++.+.... .|.|...|..+...+....-+.. +.+|..+. ..+.++.+.
T Consensus 377 etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E 453 (1018)
T KOG2002|consen 377 ETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPE 453 (1018)
T ss_pred HHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHH
Confidence 67777777777664 567788888888775 57789999998888876554443 66665543 345567888
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHhhh-hccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHH
Q 006071 339 HYGILIENFCKAEMYDRAIKLLDKLVEKEI-ILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAF 417 (662)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (662)
..|.+...+...|++..|...|......-. ...++.+-.++..+--.+..+.-..++.+.|.+.|..+.+..|.-...|
T Consensus 454 ~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~y 533 (1018)
T KOG2002|consen 454 VLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAY 533 (1018)
T ss_pred HHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHH
Confidence 999999999999999999999999876621 1112222122322233455566677899999999999999988888888
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCcHHhHHHHHHHHHh
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG-HSPASSLFRSVMESLFE 496 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 496 (662)
..++.+....++..+|...++.....+ ..++..+..+...+.....+..|..-|....+.. ..+|..+...|...|..
T Consensus 534 lRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~ 612 (1018)
T KOG2002|consen 534 LRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQ 612 (1018)
T ss_pred HHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHH
Confidence 888766666788999999999988753 3477788888889999999999988777766442 22566666666665532
Q ss_pred ------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHh
Q 006071 497 ------------DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG--SVPNFDSLLSVLS 562 (662)
Q Consensus 497 ------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~ 562 (662)
.+..++|+++|.++++.++. |...-+.++-++...|++.+|..+|.++.+.. ..+.+..++++|.
T Consensus 613 ~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~ 691 (1018)
T KOG2002|consen 613 ALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYV 691 (1018)
T ss_pred HhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHH
Confidence 45678899999999988766 77777889999999999999999999999844 3445778999999
Q ss_pred ccCCHHHHHHHHHHHhcCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHH
Q 006071 563 EKGKTIAAVKLLDFCLGRD-CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSD 625 (662)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 625 (662)
..|++-.|+++|+.+++.- ...+..+.+.|++++++.|++.+|.+.+.............-++
T Consensus 692 e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN 755 (1018)
T KOG2002|consen 692 EQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN 755 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence 9999999999999999864 34557888889999999999999999999988776554444444
No 13
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.96 E-value=8e-23 Score=215.53 Aligned_cols=594 Identities=10% Similarity=0.019 Sum_probs=412.6
Q ss_pred HHHHhhcCCCC-ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC
Q 006071 11 QNKIRALVPQF-DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW 89 (662)
Q Consensus 11 ~~~~~~~~~~~-~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 89 (662)
+..++.-|.+. ....+..++...|++++|+..++.+.+.+ |.+...+..+..+ +++.+|..+++++.+..+.
T Consensus 68 ~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~~ye~l~~~~P~- 140 (987)
T PRK09782 68 EYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVTTVEELLAQQKA- 140 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHHHHHHHHHhCCC-
Confidence 34444334332 22556668889999999999999999987 5666666655333 8999999999999988655
Q ss_pred CHHHHHHHHHH--------HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH-HHHHHHcCChhHHHHHHHHHHhCCCCcC
Q 006071 90 DEDMFEVLIES--------YGKKGIVQESVKIFDIMKQLGVERSVKSYDAL-FKLILRRGRYMMAKRYFNKMLSEGIEPT 160 (662)
Q Consensus 90 ~~~~~~~l~~~--------~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 160 (662)
+..++..+... |.+. +.|.+.++ .......|+..+.... ...|.+.|++++|+.++.++.+.++. +
T Consensus 141 n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~ 215 (987)
T PRK09782 141 CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-S 215 (987)
T ss_pred ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-C
Confidence 66677666665 6655 55555554 3333333345544444 89999999999999999999998643 4
Q ss_pred HHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC-CCHhhHHH--
Q 006071 161 RHTYNVMLWGFFL-SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE-PTVISYTT-- 236 (662)
Q Consensus 161 ~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~-- 236 (662)
......+..+|.. .++ +.+..++.. .+..+...+..+...|.+.|+.++|.++++++...-.. |...+|.-
T Consensus 216 ~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l 290 (987)
T PRK09782 216 AAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLL 290 (987)
T ss_pred HHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHH
Confidence 5556666667777 366 777777553 23358899999999999999999999999998754211 33333321
Q ss_pred ----------------------------HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 006071 237 ----------------------------MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKV 288 (662)
Q Consensus 237 ----------------------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 288 (662)
++..+.+.++++.+.++.. +.|.......-..+....+...++...
T Consensus 291 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~r~~~~~~~~~~~~~~~~ 364 (987)
T PRK09782 291 SKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA------TLPANEMLEERYAVSVATRNKAEALRL 364 (987)
T ss_pred HhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc------CCCcchHHHHHHhhccccCchhHHHHH
Confidence 2444555566664444321 234333321112222344777778888
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-C-CCCChhhHHHHHHHHHcCCc---HHHHHHH----
Q 006071 289 LREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-S-IPTEAGHYGILIENFCKAEM---YDRAIKL---- 359 (662)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a~~~---- 359 (662)
+..+.+. .|.+......+.-...+.|+.++|..+|...... + ...+......++..|.+.+. ..++..+
T Consensus 365 ~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~ 442 (987)
T PRK09782 365 ARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL 442 (987)
T ss_pred HHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence 8888775 4667888888888889999999999999998762 1 22344455577888877766 3344333
Q ss_pred --------HHHHHHhhh---hc-cCCCCCCC--ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 360 --------LDKLVEKEI---IL-RPQSTLDM--EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 360 --------~~~~~~~~~---~~-~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
.....+... .. +.-...++ +...|..+..++.. ++.++|...+.......|.+ .....+...+.
T Consensus 443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~-~~~L~lA~al~ 520 (987)
T PRK09782 443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDA-WQHRAVAYQAY 520 (987)
T ss_pred ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCch-HHHHHHHHHHH
Confidence 111100000 00 00011122 45566777777666 88889999888888776543 33444555667
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTAS 504 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~ 504 (662)
..|++++|...++.+... +|+...+..+..++.+.|++++|...+++.++.. |+. ..+..+...+...|++++|.
T Consensus 521 ~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl 596 (987)
T PRK09782 521 QVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELAL 596 (987)
T ss_pred HCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHH
Confidence 899999999999998664 3455567777888999999999999999998754 433 33333444555679999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 505 RVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
..+++.++..+ +...+..+..++.+.|++++|+..+++.+. ..|+ ...+..++...|+.++|+..++++++.
T Consensus 597 ~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 597 NDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99999998765 577888999999999999999999999998 5566 345677888999999999999999998
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhH
Q 006071 581 DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQAD 641 (662)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 641 (662)
.| .++..+..++.++...|++++|+..+++.++.... ................++..|.
T Consensus 673 ~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~-~a~i~~~~g~~~~~~~~~~~a~ 731 (987)
T PRK09782 673 LP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDN-QALITPLTPEQNQQRFNFRRLH 731 (987)
T ss_pred CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CchhhhhhhHHHHHHHHHHHHH
Confidence 64 44666778999999999999999999999987543 2233334455566666666663
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=3.1e-23 Score=193.35 Aligned_cols=432 Identities=16% Similarity=0.151 Sum_probs=217.3
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESY 101 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (662)
+...+..-+.+.|++++|++....+-+.+ +.+......+..++.+..+.+.....-....+...+ -..+|..+...+
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d--~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q-~ae~ysn~aN~~ 126 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED--PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQ-GAEAYSNLANIL 126 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC--CCcccceeeehhhhhcccchhhhhhhhhhhhhccch-HHHHHHHHHHHH
Confidence 33444445555566666666665555444 344444444445555555555544433333333222 345555566666
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH-HHHHhcCCHHHH
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML-WGFFLSLKLETA 180 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll-~~~~~~~~~~~a 180 (662)
-..|++++|+..++.+.+.. +.....|..+..++...|+.+.|.+.|.+.++. .|+.....+-+ ..+-..|++++|
T Consensus 127 kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea 203 (966)
T KOG4626|consen 127 KERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEA 203 (966)
T ss_pred HHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchh
Confidence 66666666666666665533 234455555666666666666666655555542 23332222211 122234555555
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006071 181 IRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VISYTTMIKGYVAVERADDALRIFDEMKS 259 (662)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (662)
..-|.+..+... -=...|..|...+-..|+...|++.|++..+. .|+ ...|..|...|...+.+++|+..|.+...
T Consensus 204 ~~cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~ 280 (966)
T KOG4626|consen 204 KACYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALN 280 (966)
T ss_pred HHHHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh
Confidence 555555554411 12334555555555556666666555555543 232 23555555555555555555555555544
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 006071 260 FDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH 339 (662)
Q Consensus 260 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (662)
.. +.....+..+...|...|.++.|+..|++.++. .|.-+.+|+.+..++-..|+..+|...|.+..... +.-...
T Consensus 281 lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hada 356 (966)
T KOG4626|consen 281 LR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADA 356 (966)
T ss_pred cC-CcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHH
Confidence 31 122334444555555555555555555555553 44445555555555555555555555555555442 233444
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHH
Q 006071 340 YGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNN 419 (662)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 419 (662)
.+.|...|...|.+++|..+|...++.. +. -...++.+...|-+.|++++|+..++..++..|.-..+++.
T Consensus 357 m~NLgni~~E~~~~e~A~~ly~~al~v~----p~-----~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 357 MNNLGNIYREQGKIEEATRLYLKALEVF----PE-----FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHhhC----hh-----hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 5555555555555555555555554322 10 11234445555555555555555555555555555555555
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 420 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
+...|-..|+.+.|.+.+.+....++. -...++.|...|-..|+..+|+.-+++.+
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aL 483 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTAL 483 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence 555555555555555555555543211 22444555555555555555555555554
No 15
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=9.4e-23 Score=190.24 Aligned_cols=435 Identities=15% Similarity=0.122 Sum_probs=340.3
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006071 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL 173 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 173 (662)
...+..-..+.|++.+|++.....-..+ +.+......+-..+.+..+.+.....-...++. .+.-..+|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 3444555567788888888777665543 223333333445555666666655443333333 23356678888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHhcCCHHHHHH
Q 006071 174 SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISY-TTMIKGYVAVERADDALR 252 (662)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~ 252 (662)
.|++++|+.+++.+.+.... .+..|..+..++...|+.+.|.+.|.+..+. .|+.... ..+...+...|+..+|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence 89999999999988887433 6788888888999999999999888888775 4555433 334445556788888888
Q ss_pred HHHHHhhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006071 253 IFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (662)
Q Consensus 253 ~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (662)
.|.+..+. .|. ...|+.+...+...|+...|++.|++.+. ++|.-..+|..|...|...+.++.|...|.+....
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 88887764 333 45788888888889999999999999887 47777888999999999999999999999888775
Q ss_pred CCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006071 332 SIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV 411 (662)
Q Consensus 332 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (662)
. +.....+..+...|...|..+.|+..|++.++.. |. -...|+.+..++...|++.+|...+.+.....+
T Consensus 282 r-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~----P~-----F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p 351 (966)
T KOG4626|consen 282 R-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ----PN-----FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP 351 (966)
T ss_pred C-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC----CC-----chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC
Confidence 3 4456677778888889999999999999987643 11 235789999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHH
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSV 490 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 490 (662)
..+.+.+.|...+...|.++.|..+|......... -...++.|...|-+.|++++|+..+++.++ ++|+ ...++.+
T Consensus 352 ~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~Nm 428 (966)
T KOG4626|consen 352 NHADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNM 428 (966)
T ss_pred ccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhc
Confidence 99999999999999999999999999998875321 346788999999999999999999999984 6676 4678888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
...|...|+.+.|+..+.+++..++. =.+..+.|...|...|++.+|++-+++.++ ++||
T Consensus 429 Gnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPD 488 (966)
T KOG4626|consen 429 GNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPD 488 (966)
T ss_pred chHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCC
Confidence 89999999999999999999887665 355678899999999999999999999987 6666
No 16
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.94 E-value=9.6e-21 Score=186.46 Aligned_cols=575 Identities=11% Similarity=0.071 Sum_probs=418.4
Q ss_pred hHHHHH--HHhcCCCHHHHHHHHHHHHHcCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 006071 23 HNLVYN--VLHGAKNSEHALQFFRWVERAGL-FNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (662)
Q Consensus 23 ~~~l~~--~l~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 99 (662)
..++.+ +....++|..|+.+|+.++...+ .+++ ....+..++.+.|+.+.|+..|++..+.++. +..++..|..
T Consensus 165 l~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~-~v~alv~L~~ 241 (1018)
T KOG2002|consen 165 LALLGKARIAYNKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLAFERALQLDPT-CVSALVALGE 241 (1018)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHHHHHHHhcChh-hHHHHHHHHH
Confidence 344444 56678999999999999887662 2333 3344557788999999999999999986542 3444433333
Q ss_pred HHHhc---CChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhc
Q 006071 100 SYGKK---GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE--PTRHTYNVMLWGFFLS 174 (662)
Q Consensus 100 ~~~~~---g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~~ 174 (662)
.-... ..+..+..++...-... +.++...+.|.+.|.-.|+++.+..+...+...... .-...|-.+.++|...
T Consensus 242 ~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~ 320 (1018)
T KOG2002|consen 242 VDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ 320 (1018)
T ss_pred HHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh
Confidence 22222 34566777777665543 467888999999999999999999999988765311 1234577788999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----CHHHH
Q 006071 175 LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE----RADDA 250 (662)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a 250 (662)
|++++|..+|.+..+....--+..+..+...+.+.|+++.+...|+.+... .+.+..+...|...|...+ ..+.|
T Consensus 321 Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~-~p~~~etm~iLG~Lya~~~~~~~~~d~a 399 (1018)
T KOG2002|consen 321 GDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ-LPNNYETMKILGCLYAHSAKKQEKRDKA 399 (1018)
T ss_pred ccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh-CcchHHHHHHHHhHHHhhhhhhHHHHHH
Confidence 999999999998887633222445567889999999999999999999876 3556678888888887775 45677
Q ss_pred HHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----HcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHH
Q 006071 251 LRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMV----ERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLK 326 (662)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 326 (662)
..++......- +.|...|..+...+... +....+.+|..+. ..+..+ .+...+.+...+...|+++.|...|.
T Consensus 400 ~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~i-p~E~LNNvaslhf~~g~~~~A~~~f~ 476 (1018)
T KOG2002|consen 400 SNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQI-PPEVLNNVASLHFRLGNIEKALEHFK 476 (1018)
T ss_pred HHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCC-CHHHHHhHHHHHHHhcChHHHHHHHH
Confidence 77777776653 55777888887776554 4444477766654 233333 78899999999999999999999999
Q ss_pred HHHhC---CCCCCh------hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCCh
Q 006071 327 AMIRL---SIPTEA------GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQT 396 (662)
Q Consensus 327 ~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~ 396 (662)
..... ...++. .+-..+...+-..++.+.|.+.|..++... |+- ..|..++......+..
T Consensus 477 ~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh----------p~YId~ylRl~~ma~~k~~~ 546 (1018)
T KOG2002|consen 477 SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEH----------PGYIDAYLRLGCMARDKNNL 546 (1018)
T ss_pred HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC----------chhHHHHHHhhHHHHhccCc
Confidence 88765 112222 223335566667789999999999997654 221 1222232222345788
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHhc------------C
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESYLRK------------G 463 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~------------~ 463 (662)
.+|...++.+......++.+++.+...+.+...+..|.+-|....+. ...+|+.+...|.+.|.+. +
T Consensus 547 ~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk 626 (1018)
T KOG2002|consen 547 YEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKK 626 (1018)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHH
Confidence 89999999999999889999999999999999998888877666542 2235777777777766532 3
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRID 543 (662)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (662)
..+.|+++|.+.++.. +-|...-+.+...++..|++.+|..+|.++.+.... ...+|-.++++|...|++..|+++|+
T Consensus 627 ~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe 704 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYE 704 (1018)
T ss_pred HHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHH
Confidence 4577889998888743 345667777888899999999999999999887443 45678889999999999999999999
Q ss_pred HHHhCCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHH-------------------HhcC
Q 006071 544 LMMQSGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDAL-------------------LAAG 600 (662)
Q Consensus 544 ~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-------------------~~~g 600 (662)
.....-..-+. ..++.++.+.|.+.+|.+.+..+....|......++ ++-++ ...+
T Consensus 705 ~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN-~a~v~kkla~s~lr~~k~t~eev~~a~~ 783 (1018)
T KOG2002|consen 705 NCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN-LALVLKKLAESILRLEKRTLEEVLEAVK 783 (1018)
T ss_pred HHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH-HHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 99875443332 346667778999999999999999887665544443 22222 2345
Q ss_pred CHHHHHHHHHHHHHcCCC
Q 006071 601 KTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 601 ~~~~A~~~~~~~~~~~~~ 618 (662)
..+.|.++|.++...++.
T Consensus 784 ~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 784 ELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 677788899998877665
No 17
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=2.2e-19 Score=186.91 Aligned_cols=430 Identities=15% Similarity=0.088 Sum_probs=281.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006071 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (662)
+......+.+.|+++.|+..|++.... .|+...|..+..+|.+.|++++|++.++...+.. +.+...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 334455566677777777777777664 4566667777777777777777777777777653 3345567777777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHH
Q 006071 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 323 (662)
.|++++|+..|..+...+ ..+......++..+.. ..+.......... .|.+...+..+...+ ..........
T Consensus 207 lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~--~~~~~~~~~~~~~~~-~~~~~~~~~~ 278 (615)
T TIGR00990 207 LGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILET--KPENLPSVTFVGNYL-QSFRPKPRPA 278 (615)
T ss_pred cCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhc--CCCCCCCHHHHHHHH-HHccCCcchh
Confidence 777777777666554332 1111111111111111 1222222222222 222222222222221 1111111111
Q ss_pred HHHHHHhCCCCCC-hhhHHHHHHH---HHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH
Q 006071 324 VLKAMIRLSIPTE-AGHYGILIEN---FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (662)
Q Consensus 324 ~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (662)
-+...... .+. ...+..+... ....+++++|...|+..++.+ ...+.....+..+...+...|++++|
T Consensus 279 ~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~------~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 279 GLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLG------KLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred hhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcC------CCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 11111111 111 1111111111 123467889999999886532 00112334577777788889999999
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
...+++.....|.+...|..+...+...|++++|...|+.+.+.+ +.+...|..+...+...|++++|...|++.++..
T Consensus 351 ~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 351 LADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 999999999888888899999999999999999999999988764 3367889999999999999999999999998743
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CCH---
Q 006071 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSV--PNF--- 554 (662)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~--- 554 (662)
+.+...+..+...+.+.|++++|+..+++.++..+. +...+..+..++...|++++|++.|++....... +..
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 234566777788889999999999999999887544 6778888999999999999999999998873211 111
Q ss_pred HHHH----HHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 555 DSLL----SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 555 ~~~~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
..++ ..+...|++++|.+++++++..++. +...+..+++++...|++++|++.+++..+..
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~-~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIIDPE-CDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 1111 1223469999999999999988643 34567789999999999999999999987764
No 18
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.91 E-value=7.3e-19 Score=183.08 Aligned_cols=252 Identities=18% Similarity=0.134 Sum_probs=126.1
Q ss_pred CChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhc
Q 006071 316 GHLNAAADVLKAMIRLS--IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHN 393 (662)
Q Consensus 316 g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (662)
+.+++|...|+.....+ .+.....+..+...+...|++++|+..+++.++.. | .....|..+...+...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~----P-----~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD----P-----RVTQSYIKRASMNLEL 378 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----C-----CcHHHHHHHHHHHHHC
Confidence 44555555555554432 12223344444555555555555555555554321 1 1122444445555555
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 473 (662)
|++++|...|+.+.+..+.++.++..+...+...|++++|...|+...+.. +.+...+..+..++.+.|++++|+..++
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~ 457 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFR 457 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555555555555555555555555555555666666666665555543 2234455555555555666666666666
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL------DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+.++. .+.+...+..+...+...|++++|+..|++.+...+.... ..++.....+...|++++|++++++.+.
T Consensus 458 ~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~ 536 (615)
T TIGR00990 458 RCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALI 536 (615)
T ss_pred HHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55542 1223444555555555566666666666665554322111 0111111222234566666666665554
Q ss_pred CCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 548 SGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 548 ~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
..|+ ...++.++...|++++|+.+++++++.
T Consensus 537 --l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 537 --IDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred --cCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 2233 123455555566666666666665554
No 19
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.91 E-value=6.4e-18 Score=165.72 Aligned_cols=610 Identities=14% Similarity=0.105 Sum_probs=375.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
+.+...|++++|.+++.++.+++ |..+.+|..+..+|-..|+.+++...+-.+....+. |...|..+.....+.|.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i 223 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNI 223 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccH
Confidence 36667799999999999999998 899999999999999999999999887766555443 779999999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHH----HHHHHHhcCCHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNV----MLWGFFLSLKLETAIRF 183 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~a~~~ 183 (662)
+.|.-.|.++.+.. +++...+-.-+..|-+.|+...|.+-|.++....++.|..-+.. ++..+...++-+.|.+.
T Consensus 224 ~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 224 NQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 99999999999875 45555555567788899999999999999988744333333333 35566677777999999
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC---------------------------CCHhhHH
Q 006071 184 FEDMKSR-GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE---------------------------PTVISYT 235 (662)
Q Consensus 184 ~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---------------------------~~~~~~~ 235 (662)
++..... +-..+...++.++..+.+...++.+......+...... ++..+ .
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~ 381 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-I 381 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-H
Confidence 9888763 22335677889999999999999999888777762222 22222 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 006071 236 TMIKGYVAVERADDALRIFDEMKSFDV--KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (662)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (662)
.++-++.+.+..+....+...+....+ .-+...|.-+..++...|++.+|+.++..+....... +..+|..++.+|.
T Consensus 382 rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~ 460 (895)
T KOG2076|consen 382 RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYM 460 (895)
T ss_pred hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHH
Confidence 222233333444444444444444443 3345678889999999999999999999998875444 6789999999999
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhc
Q 006071 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHN 393 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 393 (662)
..|.++.|.+.|+.++... |.+...-..|...+.+.|+.++|.+.+..+...+....+.....|+..........+...
T Consensus 461 ~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~ 539 (895)
T KOG2076|consen 461 ELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQV 539 (895)
T ss_pred HHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHh
Confidence 9999999999999998864 566777778888999999999999999987532211112233344444444444455556
Q ss_pred CChhHHHHHHHHHHhcC-----------------------CCCHHHHHHHHHHHHhcCChhHHHHHHH------HHhhCC
Q 006071 394 GQTGKAEIFFRQLMKKG-----------------------VLDPVAFNNLIRGHSKEGNPDSAFEIVK------IMGRRG 444 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~ 444 (662)
|+.++-......+.... +........++.+-.+.++......-.. .....+
T Consensus 540 gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~ 619 (895)
T KOG2076|consen 540 GKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRG 619 (895)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhcc
Confidence 66554333222222110 0011111122222222222111111000 000011
Q ss_pred CCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CCcH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 006071 445 VPRDA--DAYICLIESYLRKGEPADAKTALDSMIEDGH--SPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK---- 513 (662)
Q Consensus 445 ~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---- 513 (662)
..-+. ..+.-++.++++.+++++|..+...+..... .++. ..-...+.++...+++..|...++.++..
T Consensus 620 Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~ 699 (895)
T KOG2076|consen 620 LSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFY 699 (895)
T ss_pred CcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhh
Confidence 11110 1223334444455555555555444443211 1111 11112223334444444444444444332
Q ss_pred -----------------------------------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCHHHH
Q 006071 514 -----------------------------------GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFDSL 557 (662)
Q Consensus 514 -----------------------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~ 557 (662)
....+..........+...+.+..|++.+-++.. .+-.|-.+..
T Consensus 700 ~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~ 779 (895)
T KOG2076|consen 700 LDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLC 779 (895)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1111122222223344456778888887766665 3334543321
Q ss_pred HH-HH-----h-----ccCCHHHHHHHHHHHhcCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----
Q 006071 558 LS-VL-----S-----EKGKTIAAVKLLDFCLGRDCI--IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT----- 619 (662)
Q Consensus 558 ~~-~~-----~-----~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----- 619 (662)
+. ++ . +.-..-.+...+++-.+.... .....| .++++|-..|=..-|+.++++.+.....+
T Consensus 780 lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~Y-NigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~ 858 (895)
T KOG2076|consen 780 LGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFY-NIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPK 858 (895)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHH-HHHHHHHHcccHHHHHHHHHHHhCCCcccccccc
Confidence 11 11 1 111223344444433332211 224445 59999999999999999999999874321
Q ss_pred ----c--HhhHHHHHHHHHhcCCcchhHHHHH
Q 006071 620 ----D--WKSSDKLIAGLNQEGNTKQADILSR 645 (662)
Q Consensus 620 ----~--~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (662)
+ -.+...|.-.|.++|+.+-|..+.+
T Consensus 859 ~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~ 890 (895)
T KOG2076|consen 859 EDNYDLRKEAAYNLHLIYKKSGNMQLARQILE 890 (895)
T ss_pred CCcccHHHHHHhhhhhhhccCCcHHHHHHHHH
Confidence 1 1122237778999999999976654
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.91 E-value=1.6e-19 Score=186.97 Aligned_cols=334 Identities=9% Similarity=0.004 Sum_probs=222.7
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
...+...+.+.|++++|+.+++.++... |.++.++..++.++...|++++|...++++....+. +...+..+...+.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~ 121 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLL 121 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 3455556667777777777777777765 666667777777777777777777777777766543 5666777777777
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
..|++++|...++++.... +.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++|..
T Consensus 122 ~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 122 KSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHH
Confidence 7777777777777777643 345566777777777777777777777776554322 22233222 23566777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH----HHHHHHHHh
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD----ALRIFDEMK 258 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~ 258 (662)
.++.+.+....++...+..+..++...|++++|...++...... +.+...+..+...+...|++++ |...|++..
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al 277 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHAL 277 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH
Confidence 77777665433344444555566777777777777777777653 3455666677777777777764 677777776
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 006071 259 SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG 338 (662)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 338 (662)
... +.+...+..+...+...|++++|...+++.... .|.+..++..+..++.+.|++++|...|+.+...+ +.+..
T Consensus 278 ~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~-P~~~~ 353 (656)
T PRK15174 278 QFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK-GVTSK 353 (656)
T ss_pred hhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-ccchH
Confidence 642 334556777777777777777777777777764 56566677777777777777777777777776643 22223
Q ss_pred hHHHHHHHHHcCCcHHHHHHHHHHHHHhh
Q 006071 339 HYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 339 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
.+..+..++...|++++|...|+++++..
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 33334556677777777777777776543
No 21
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=1.8e-20 Score=185.64 Aligned_cols=295 Identities=16% Similarity=0.152 Sum_probs=141.3
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC---HHHHHHHHHHHHhcC
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD---EDMFEVLIESYGKKG 105 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g 105 (662)
.....|+++.|+..|+.+.+.+ |.+..++..++..+...|++++|..+++.+...+..++ ...+..++..|...|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 3445556666666666666554 44555556666666666666666666665554321111 133455555555556
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHhcCCHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR----HTYNVMLWGFFLSLKLETAI 181 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~ 181 (662)
+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6666666665555432 234445555555555556666666555555544322211 12233334444555555555
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006071 182 RFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (662)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (662)
..++++.+.. +.+...+..+...+.+.|++++|.++|+++...+......+++.++.+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 5555554432 11333444444555555555555555555544321111233444445555555555555555554443
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHh---cCChHHHHHHHHHHHhCC
Q 006071 262 VKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCK---SGHLNAAADVLKAMIRLS 332 (662)
Q Consensus 262 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 332 (662)
.|+...+..+...+.+.|++++|..+++++.+. .| +...+..++..+.. .|+.+++..+++.+.+.+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P-~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HP-SLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--Cc-CHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 233333344444445555555555555544443 23 33333333333332 234444444444444433
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.89 E-value=6.7e-20 Score=181.61 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=177.9
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHHHhcCChH
Q 006071 242 VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK--DNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 242 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 319 (662)
...|++++|+..|.++.+.+ +.+..++..+...+...|++++|..+++.+......+. ....+..++..|...|+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~ 124 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD 124 (389)
T ss_pred HhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 34444444555554444432 22333444444444555555555555554444211110 0123444555555555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (662)
.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.. +..........+..+...+...|++++|
T Consensus 125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG----GDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 5555555555432 3344555555666666666666666666554322 1100000011234455566677777777
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
...|+++.+..+.+..++..++..+...|++++|.++++.+...+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 7777777776666666777777888888888888888888776533322456777778888888888888888887764
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHhCCCCCC
Q 006071 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM---RGHVEEALGRIDLMMQSGSVPN 553 (662)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~ 553 (662)
.|+...+..+...+.+.|++++|..+++++++. .|+...+..++..+.. .|+.++++.+++++.+.++.|+
T Consensus 279 -~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 352 (389)
T PRK11788 279 -YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK 352 (389)
T ss_pred -CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence 355555667777788888888888888877765 3556666666655553 4577788888887776444444
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.2e-18 Score=182.55 Aligned_cols=413 Identities=12% Similarity=0.048 Sum_probs=250.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006071 160 TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIK 239 (662)
Q Consensus 160 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 239 (662)
++....-.+......|+.++|+.++....... +.+...+..+..++...|++++|..+|+...... +.+...+..++.
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~ 91 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLIL 91 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 33344444455555566666666666555421 2244445555566666666666666666655431 233444555555
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChH
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (662)
.+...|++++|+..++++.... +.+.. +..+..++...|+.++|+..++++.+. .|.+...+..+...+...+..+
T Consensus 92 ~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 92 TLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChH
Confidence 5556666666666666655441 22333 555555555566666666666666553 4445555555555555555555
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCCh---
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT--- 396 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--- 396 (662)
.|+..++.+.. .|+ +..-+ ....+.....- .+.......+++
T Consensus 168 ~Al~~l~~~~~---~p~---~~~~l-------~~~~~~~~~r~----------------------~~~~~~~~~~r~~~a 212 (765)
T PRK10049 168 PALGAIDDANL---TPA---EKRDL-------EADAAAELVRL----------------------SFMPTRSEKERYAIA 212 (765)
T ss_pred HHHHHHHhCCC---CHH---HHHHH-------HHHHHHHHHHh----------------------hcccccChhHHHHHH
Confidence 55555544332 111 00000 00000000000 000001112233
Q ss_pred hHHHHHHHHHHhcC---CCCHHHH----HHHHHHHHhcCChhHHHHHHHHHhhCCCC-CCHHhHHHHHHHHHhcCChHHH
Q 006071 397 GKAEIFFRQLMKKG---VLDPVAF----NNLIRGHSKEGNPDSAFEIVKIMGRRGVP-RDADAYICLIESYLRKGEPADA 468 (662)
Q Consensus 397 ~~a~~~~~~~~~~~---~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a 468 (662)
++|+..++.+.+.. +.+...+ ...+.++...|++++|+..|+.+.+.+.+ |+. ....+..+|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 67888888888653 2211111 11133456779999999999999887532 322 222357789999999999
Q ss_pred HHHHHHHHHcCCCC---cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHh
Q 006071 469 KTALDSMIEDGHSP---ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV-----------KEN---LDLVAKILEALLM 531 (662)
Q Consensus 469 ~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~ 531 (662)
...++++.+..... .......+..++...|++++|..+++.+....+ .|+ ...+..+...+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999987643111 123455666678999999999999999987643 123 2345567788899
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 006071 532 RGHVEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
.|++++|+++++++.. ..|+. ..++..+...|++++|++.+++++...|. +...+...+.++.+.|++++|.+
T Consensus 372 ~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd-~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 372 SNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPR-NINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred cCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHhCCHHHHHH
Confidence 9999999999999987 44552 34666777899999999999999998643 34456678889999999999999
Q ss_pred HHHHHHHcCC
Q 006071 608 ILFKIMEKGG 617 (662)
Q Consensus 608 ~~~~~~~~~~ 617 (662)
.++++++..+
T Consensus 449 ~~~~ll~~~P 458 (765)
T PRK10049 449 LTDDVVAREP 458 (765)
T ss_pred HHHHHHHhCC
Confidence 9999998643
No 24
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.89 E-value=2.3e-18 Score=182.49 Aligned_cols=424 Identities=12% Similarity=0.063 Sum_probs=234.0
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
+.++.-..-.+.+....|+.++|++++.+..... +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3344444444445555555555555555544311 1233345555555555555555555555554432 2334444455
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
...+...|++++|+..++++++.. +.+.. +..+..++...|++++|...++++.+..+. +...+..+..++...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence 555555555555555555554431 22333 444444455555555555555555554222 333444444445555555
Q ss_pred HHHHHHHHHHHHCCCCCCH------hhHHHHHHHH-----HhcCCH---HHHHHHHHHHhhC-CCCCCHH-HHH----HH
Q 006071 213 DEAEKLFAEMKEKNIEPTV------ISYTTMIKGY-----VAVERA---DDALRIFDEMKSF-DVKPNAV-TYT----AL 272 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~-----~~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~~----~l 272 (662)
+.|...++.... .|+. .....++... ...+++ ++|++.++.+.+. ...|+.. .+. ..
T Consensus 167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~ 243 (765)
T PRK10049 167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDR 243 (765)
T ss_pred HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHH
Confidence 555555544332 1110 0111111111 111223 5667777776643 1122221 111 11
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 006071 273 LPGLCDAGKMVEVQKVLREMVERYIP-PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPT---EAGHYGILIENFC 348 (662)
Q Consensus 273 l~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 348 (662)
+.++...|++++|+..|+.+.+.+.. |.+ ....+...|...|++++|...|+.+.+..... .......+..++.
T Consensus 244 l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~--a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 244 LGALLARDRYKDVISEYQRLKAEGQIIPPW--AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHhhhHHHHHHHHHHhhccCCCCCHH--HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 33445667888888888887776421 312 22234667788888888888888876543111 1234555666778
Q ss_pred cCCcHHHHHHHHHHHHHhhhhcc---CCCCCCCcc---ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 349 KAEMYDRAIKLLDKLVEKEIILR---PQSTLDMEA---SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 349 ~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
..|++++|...++.+.+...... ......|+. ..+......+...|+.++|+..++.+....|.++..+..++.
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 88888888888888865421000 000112232 233455666777888888888888888888888888888888
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHH
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRS 489 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 489 (662)
.+...|++++|++.++.+.... +.+...+...+..+.+.|++++|..+++++++. .|+......
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~ 465 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQR 465 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 8888888888888888887754 334666677777788888888888888888864 355444333
No 25
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.89 E-value=2.3e-15 Score=142.32 Aligned_cols=575 Identities=12% Similarity=0.077 Sum_probs=373.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006071 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKI 113 (662)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 113 (662)
++...|..+++...+.+ |.++..|..-.+.--..|.+..|..+..+--+. ++.+..+|.--+ +....+.|..+
T Consensus 265 ~DikKaR~llKSvretn--P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLeai----RLhp~d~aK~v 337 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN--PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEAI----RLHPPDVAKTV 337 (913)
T ss_pred HHHHHHHHHHHHHHhcC--CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHHH----hcCChHHHHHH
Confidence 37889999999999988 788888888888778888888888776654332 223455554333 22233334444
Q ss_pred HHHHHHcC------------------------------CCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHH
Q 006071 114 FDIMKQLG------------------------------VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHT 163 (662)
Q Consensus 114 ~~~~~~~g------------------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 163 (662)
.-...... +|.++..|-.. ....+.+.|.-++.+..+. ++.+..
T Consensus 338 vA~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaA----VelE~~~darilL~rAvec-cp~s~d- 411 (913)
T KOG0495|consen 338 VANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAA----VELEEPEDARILLERAVEC-CPQSMD- 411 (913)
T ss_pred HHHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHH----HhccChHHHHHHHHHHHHh-ccchHH-
Confidence 43333321 22333333322 2334455566666666553 222222
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH----HCCCCCCHhhHHHHHH
Q 006071 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK----EKNIEPTVISYTTMIK 239 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~ 239 (662)
|..++++..-++.|..+++...+. ++.+...|.+-...--.+|+.+...+++++-. ..|+..+...|..=..
T Consensus 412 ---LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 412 ---LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 233455566677777777777765 55567777766666667777777777766533 4566667777777777
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPN--AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGH 317 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (662)
.|-..|..-.+..+....+..|+... ..||..-...|.+.+.++-+..+|...++- .|.+...|......--..|.
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt 565 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGT 565 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCc
Confidence 77777777777777777766665432 346777777777777777777777777763 56567777777776667777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChh
Q 006071 318 LNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTG 397 (662)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 397 (662)
.+....+|.+.... ++-....|......+-..|+...|..++..+.+.. + .+...|...+.....+.+++
T Consensus 566 ~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~----p-----nseeiwlaavKle~en~e~e 635 (913)
T KOG0495|consen 566 RESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN----P-----NSEEIWLAAVKLEFENDELE 635 (913)
T ss_pred HHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC----C-----CcHHHHHHHHHHhhccccHH
Confidence 77777777777665 34555556666666667777777877777776543 1 23456666666677777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
.|..+|.+.... .++..+|..-+......++.++|.+++++..+. ++.-...|..+...+-+.++.+.|...|..-.+
T Consensus 636 raR~llakar~~-sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 636 RARDLLAKARSI-SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK 713 (913)
T ss_pred HHHHHHHHHhcc-CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc
Confidence 887777776654 345556666666666677778888877777764 232345667777777777777777777766554
Q ss_pred cCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----
Q 006071 478 DGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---- 553 (662)
Q Consensus 478 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---- 553 (662)
. .+-....|..+...-.+.|.+-.|..++++..-++++ +...|-..++.-.+.|+.+.|..+..+.++ --|+
T Consensus 714 ~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~L 789 (913)
T KOG0495|consen 714 K-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLL 789 (913)
T ss_pred c-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchh
Confidence 2 2334556666666666777888888888888777776 677777788888888888888877766665 2222
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 006071 554 FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (662)
Q Consensus 554 ~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (662)
+..-+....+.++...+...+++ +..++.+...++..++...+++.|.+.|.+.+..+ +....+|.-+..-+..
T Consensus 790 WaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 790 WAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELR 863 (913)
T ss_pred HHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHH
Confidence 22223333344454444444442 34566777778888888889999999999888764 3355566667777888
Q ss_pred cCCcchhHHHHHHhhh
Q 006071 634 EGNTKQADILSRMIRG 649 (662)
Q Consensus 634 ~g~~~~a~~~~~~~~~ 649 (662)
+|.-++-..+..+...
T Consensus 864 hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 864 HGTEEDQKEVLKKCET 879 (913)
T ss_pred hCCHHHHHHHHHHHhc
Confidence 8877776666555543
No 26
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.89 E-value=2.7e-18 Score=177.78 Aligned_cols=394 Identities=11% Similarity=0.046 Sum_probs=303.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLF-NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
.+.++.+++.---.|....+...- ..+..-...++..+.+.|++++|..+++......+. +...+..++.+....|++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~ 92 (656)
T PRK15174 14 TLLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQP 92 (656)
T ss_pred hhhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCH
Confidence 456677888777777776654311 223345666777888999999999999999887655 566677777788889999
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 187 (662)
+.|...|+++.+.. |.+...+..+...+...|++++|+..+++..... +.+...+..+...+...|++++|...++.+
T Consensus 93 ~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 93 DAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 99999999999865 4567788889999999999999999999998763 335677888888999999999999999988
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHH
Q 006071 188 KSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAV 267 (662)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 267 (662)
...... +...+..+ ..+...|++++|...++.+......++...+..+...+...|++++|...++.+.... +.+..
T Consensus 171 ~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 776433 33344333 3478899999999999998776433344555666788899999999999999998764 45677
Q ss_pred HHHHHHHHHHhCCCHHH----HHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 006071 268 TYTALLPGLCDAGKMVE----VQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGIL 343 (662)
Q Consensus 268 ~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 343 (662)
.+..+...+...|++++ |...++++... .|.+..++..+...+...|++++|...+++..... +.+...+..+
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~L 324 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 88889999999999986 89999999885 68788999999999999999999999999998864 5566778888
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC-HH----HH
Q 006071 344 IENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD-PV----AF 417 (662)
Q Consensus 344 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~----~~ 417 (662)
..++.+.|++++|+..|+.+.+.. |+. ..+..+..++...|+.++|...|+.+.+..|.+ +. +.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~----------P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ea~ 394 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREK----------GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEEGL 394 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC----------ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHHHH
Confidence 999999999999999999986543 332 233445667889999999999999998876322 22 33
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHh
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
..+-.++...+..++....+.++.
T Consensus 395 ~~~~~~~~~~~~~~~~~~W~~~~~ 418 (656)
T PRK15174 395 LALDGQISAVNLPPERLDWAWEVA 418 (656)
T ss_pred HHHHHHHHhcCCccchhhHHHHHh
Confidence 334444444455544434444443
No 27
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=1.8e-16 Score=164.35 Aligned_cols=448 Identities=12% Similarity=0.050 Sum_probs=325.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
+..+.|+++.|++.|+.+++.. |.++.....++.++...|+.++|+..+++..... +........+...+...|+++
T Consensus 43 i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 43 IRARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHH
Confidence 5558999999999999999887 5553333388888899999999999999998321 224444555567888999999
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 188 (662)
+|+++|+++.+.. +.++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|+..++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999999999875 455777888889999999999999999999775 4555555444444444566666999999999
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhH------HHHHHHH-----HhcCCH---HHHHHHH
Q 006071 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISY------TTMIKGY-----VAVERA---DDALRIF 254 (662)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~~---~~a~~~~ 254 (662)
+..+ .+...+..+..++.+.|-...|.++..+-... +.+....+ ..+++.- ...+++ +.|+.-+
T Consensus 197 ~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~ 274 (822)
T PRK14574 197 RLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADY 274 (822)
T ss_pred HhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHH
Confidence 9843 37788888999999999999998777664321 11111111 0111100 011233 3445555
Q ss_pred HHHhh-CCCCCC-HHH----HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 255 DEMKS-FDVKPN-AVT----YTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 255 ~~~~~-~~~~~~-~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
+.+.. .+-.|. ... ..-.+-++...|++.++++.|+.+...+.+. ...+...++.+|...+..++|..+|..+
T Consensus 275 ~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~~a~adayl~~~~P~kA~~l~~~~ 353 (822)
T PRK14574 275 QNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYARRWAASAYIDRRLPEKAAPILSSL 353 (822)
T ss_pred HHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 55443 121232 222 2234557788999999999999999887543 4568889999999999999999999999
Q ss_pred HhCC-----CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhcc---CCCCCCCccc---cHHHHHHHHHhcCChh
Q 006071 329 IRLS-----IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR---PQSTLDMEAS---SYNPMIQHLCHNGQTG 397 (662)
Q Consensus 329 ~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~---~~~~l~~~~~~~~~~~ 397 (662)
.... .+++......|.-+|...+++++|..+++.+.+...... ......|+.. .+..++..+...|+..
T Consensus 354 ~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~ 433 (822)
T PRK14574 354 YYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLP 433 (822)
T ss_pred hhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHH
Confidence 7643 123344457789999999999999999999976321000 0011123322 2334566778889999
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
+|++.++.+....|.|+.....+...+...|.+.+|...++...... +-+..+....+.++...+++++|..+.+...+
T Consensus 434 ~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 434 TAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 99999999998889999999999999999999999999997777653 33667788888888899999999999988886
Q ss_pred cCCCCcHHhHH
Q 006071 478 DGHSPASSLFR 488 (662)
Q Consensus 478 ~~~~~~~~~~~ 488 (662)
. .|+.....
T Consensus 513 ~--~Pe~~~~~ 521 (822)
T PRK14574 513 R--SPEDIPSQ 521 (822)
T ss_pred h--CCCchhHH
Confidence 4 35554333
No 28
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.87 E-value=2.3e-15 Score=142.37 Aligned_cols=534 Identities=11% Similarity=0.089 Sum_probs=349.3
Q ss_pred HHHHHHhhcCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC
Q 006071 9 RLQNKIRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ 88 (662)
Q Consensus 9 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 88 (662)
.+-++++.+|.++.. -+++.--..+...=..+++.+++.- |.+...|...+ ...+.+.|+-++.+.++- ++
T Consensus 337 vvA~Avr~~P~Sv~l--W~kA~dLE~~~~~K~RVlRKALe~i--P~sv~LWKaAV----elE~~~darilL~rAvec-cp 407 (913)
T KOG0495|consen 337 VVANAVRFLPTSVRL--WLKAADLESDTKNKKRVLRKALEHI--PRSVRLWKAAV----ELEEPEDARILLERAVEC-CP 407 (913)
T ss_pred HHHHHHHhCCCChhh--hhhHHhhhhHHHHHHHHHHHHHHhC--CchHHHHHHHH----hccChHHHHHHHHHHHHh-cc
Confidence 344566666544322 2222222334445556677777654 66666665554 334556677777777654 23
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHH----HhCCCCcCHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKM----LSEGIEPTRHTY 164 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~ 164 (662)
.+...|. ++++...++.|..+++..++. ++.+...|.+-...--.+|+.+...+++.+- ...|+..+...|
T Consensus 408 ~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqW 482 (913)
T KOG0495|consen 408 QSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQW 482 (913)
T ss_pred chHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHH
Confidence 3444444 344556677788888777763 5667777777666666777777777776554 334777777777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006071 165 NVMLWGFFLSLKLETAIRFFEDMKSRGISLD--VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (662)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (662)
..=...|-..|..-.+..+.......|+.-. ..+|+.-...|.+.+.++-|..+|....+- ++-+...|......--
T Consensus 483 l~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek 561 (913)
T KOG0495|consen 483 LKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEK 561 (913)
T ss_pred HHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHH
Confidence 7777777777777777777777776665422 356777777777788888888887777664 3445667777777666
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHH
Q 006071 243 AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAA 322 (662)
Q Consensus 243 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 322 (662)
..|..+.-..+|+++... ++-....|......+-..|+...|..++..+.+. .|++..+|..-+.....+..++.|.
T Consensus 562 ~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 562 SHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--NPNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred hcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--CCCcHHHHHHHHHHhhccccHHHHH
Confidence 777777777777777665 3444555666666666778888888888777775 4557777777777777777888888
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc-cccHHHHHHHHHhcCChhHHHH
Q 006071 323 DVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME-ASSYNPMIQHLCHNGQTGKAEI 401 (662)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 401 (662)
.+|.+.... .++..+|..-+...--.+..++|++++++.++.. |+ ...|..+...+-+.++.+.|..
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f----------p~f~Kl~lmlGQi~e~~~~ie~aR~ 706 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF----------PDFHKLWLMLGQIEEQMENIEMARE 706 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC----------CchHHHHHHHhHHHHHHHHHHHHHH
Confidence 887777653 5666666666666666677788888877776544 22 2356666677777778888887
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006071 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS 481 (662)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 481 (662)
.|..-.+..|..+..|..|...--+.|.+-+|..+++...-.++. +...|...|..-.+.|+.+.|..+..+.++ ..+
T Consensus 707 aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp 784 (913)
T KOG0495|consen 707 AYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQ-ECP 784 (913)
T ss_pred HHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCC
Confidence 777777777777777777777777777788888888777766544 677777777777788888888777777765 344
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-HHHH--
Q 006071 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF-DSLL-- 558 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~-- 558 (662)
.+...|...|....+.++-..+...+++ ..-|+.....+...+....+++.|.+-|.+.++ ..|++ +.+.
T Consensus 785 ~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk--~d~d~GD~wa~f 857 (913)
T KOG0495|consen 785 SSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVK--KDPDNGDAWAWF 857 (913)
T ss_pred ccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc--cCCccchHHHHH
Confidence 4556666666655555553333333322 222455556666777777777777777777776 45553 2233
Q ss_pred -HHHhccCCHHHHHHHHHHHhcCC
Q 006071 559 -SVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 559 -~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
......|.-++-.+++.+.....
T Consensus 858 ykfel~hG~eed~kev~~~c~~~E 881 (913)
T KOG0495|consen 858 YKFELRHGTEEDQKEVLKKCETAE 881 (913)
T ss_pred HHHHHHhCCHHHHHHHHHHHhccC
Confidence 23345676666667776665554
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.87 E-value=3.2e-16 Score=162.53 Aligned_cols=193 Identities=11% Similarity=0.067 Sum_probs=101.8
Q ss_pred HHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCHHHHH
Q 006071 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFN 418 (662)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~ 418 (662)
-++...+++.++++.|+.+ +..+.+....+-..+.++|...+++++|+.+++.+.... +++.....
T Consensus 300 ~aL~~r~r~~~vi~~y~~l--------~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~ 371 (822)
T PRK14574 300 GALLVRHQTADLIKEYEAM--------EAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDAD 371 (822)
T ss_pred HHHHHhhhHHHHHHHHHHh--------hhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHH
Confidence 3455666666666666666 333322223344556666666666666666666665433 11222235
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCC-----------CCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006071 419 NLIRGHSKEGNPDSAFEIVKIMGRRGV-----------PRDA---DAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS 484 (662)
Q Consensus 419 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 484 (662)
.|.-++...+++++|..+++.+.+..+ .|+. ..+..++..+...|+..+|.+.++++.... +-|.
T Consensus 372 ~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~ 450 (822)
T PRK14574 372 DLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQ 450 (822)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCH
Confidence 566666666666666666666654211 0111 122334444555566666666666655422 2344
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.....+...+...|.+.+|...++.+....+. +.......+.++...|++++|..+.+.+.+
T Consensus 451 ~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~-~~~~~~~~~~~al~l~e~~~A~~~~~~l~~ 512 (822)
T PRK14574 451 NLRIALASIYLARDLPRKAEQELKAVESLAPR-SLILERAQAETAMALQEWHQMELLTDDVIS 512 (822)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc-cHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 45555555555566666666666554444333 344444555555555666666655555554
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.85 E-value=4.8e-15 Score=145.92 Aligned_cols=583 Identities=15% Similarity=0.150 Sum_probs=364.9
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESY 101 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 101 (662)
++..|..++...|+.+.++..+-.+--.. |.+...|..+.....+.|++++|.-+|.+.++..+. +....-.-...|
T Consensus 175 ay~tL~~IyEqrGd~eK~l~~~llAAHL~--p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~ 251 (895)
T KOG2076|consen 175 AYYTLGEIYEQRGDIEKALNFWLLAAHLN--PKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLY 251 (895)
T ss_pred hHHHHHHHHHHcccHHHHHHHHHHHHhcC--CCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHH
Confidence 56888889999999999998877665554 788899999999999999999999999999987654 555555667788
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHhHH----HHHHHHHHcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCC
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERSVKSYD----ALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLK 176 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~ 176 (662)
-+.|+...|..-|.++.....+.+-.-.. ..+..+...++-+.|.+.++..... +-..+...++.++..+.+...
T Consensus 252 ~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q 331 (895)
T KOG2076|consen 252 QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQ 331 (895)
T ss_pred HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHH
Confidence 99999999999999999865322222222 2355566677779999988888663 223455567788888888899
Q ss_pred HHHHHHHHHHHHhCCCCC---------------------------CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC--C
Q 006071 177 LETAIRFFEDMKSRGISL---------------------------DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN--I 227 (662)
Q Consensus 177 ~~~a~~~~~~~~~~~~~~---------------------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~ 227 (662)
++.+......+..+...+ +..+ --++-++......+....+...+...+ +
T Consensus 332 ~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~ 410 (895)
T KOG2076|consen 332 SDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWV 410 (895)
T ss_pred HHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCCh
Confidence 999988887777622222 2222 122333444445555555555555554 3
Q ss_pred CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHH
Q 006071 228 EPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMK 307 (662)
Q Consensus 228 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 307 (662)
.-+...|.-+..++...|++..|+.+|..+......-+...|..+..+|...|.++.|.+.|+..+.. .|.+..+...
T Consensus 411 ~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~ 488 (895)
T KOG2076|consen 411 SDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--APDNLDARIT 488 (895)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhh
Confidence 34556788999999999999999999999987655556789999999999999999999999999985 7878899999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh--------CCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhcc--------
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIR--------LSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR-------- 371 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------- 371 (662)
|...+.+.|+.++|.++++.+.. .+..|+..........+.+.|+.++-+.+...++......+
T Consensus 489 Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k 568 (895)
T KOG2076|consen 489 LASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKK 568 (895)
T ss_pred HHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999999998642 22345555556667778888887776666555544322100
Q ss_pred ------CCCCCCCccccHHHHHHHHHhcCChhHHHHHHHH------HHhcC--CCCH-HHHHHHHHHHHhcCChhHHHHH
Q 006071 372 ------PQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQ------LMKKG--VLDP-VAFNNLIRGHSKEGNPDSAFEI 436 (662)
Q Consensus 372 ------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~------~~~~~--~~~~-~~~~~l~~~~~~~~~~~~a~~~ 436 (662)
...+......+......+-.+.++......-... ....+ ..+- ..+..++..+++.+++++|..+
T Consensus 569 ~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~v 648 (895)
T KOG2076|consen 569 KRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSV 648 (895)
T ss_pred HHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 0000011111111111111111111111110000 00000 0011 1223344444555555555555
Q ss_pred HHHHhhCCC-CCCH----HhHHHHHHHHHhcCChHHHHHHHHHHHHc-CC--CCc-HHhHH-------------------
Q 006071 437 VKIMGRRGV-PRDA----DAYICLIESYLRKGEPADAKTALDSMIED-GH--SPA-SSLFR------------------- 488 (662)
Q Consensus 437 ~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~--~~~-~~~~~------------------- 488 (662)
...+..... .-+. ..-...+.+....+++..|...+..|... ++ .|. ...|+
T Consensus 649 v~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~ 728 (895)
T KOG2076|consen 649 VFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLI 728 (895)
T ss_pred HHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544443211 0011 11222333444445555555555444432 00 011 11111
Q ss_pred ----------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----------CCCHHHHHHHH
Q 006071 489 ----------------SVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM----------RGHVEEALGRI 542 (662)
Q Consensus 489 ----------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~ 542 (662)
.....+...+.+..|+..+-++...++..+...+ .++.++.. +-.+-.++.++
T Consensus 729 ~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl-~lglafih~a~qr~v~~Rh~~i~qG~afL 807 (895)
T KOG2076|consen 729 MRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL-CLGLAFIHLALQRRVSNRHAQIAQGFAFL 807 (895)
T ss_pred HHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 1111234477889999988888777665222211 12222211 11234556666
Q ss_pred HHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC---------C---hhhHHHHHHHHHhcCCHHHHH
Q 006071 543 DLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII---------D---LASYEKVLDALLAAGKTLNAY 606 (662)
Q Consensus 543 ~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~---------~---~~~~~~l~~~~~~~g~~~~A~ 606 (662)
++-.+....-+ .-.++.+|...|-..-|..+++++++..+.+ + ...| .+.-+|...|+..-|.
T Consensus 808 ~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~~~~~~~~d~~dLrkeAA~-NL~LIY~~SGn~~lAr 886 (895)
T KOG2076|consen 808 KRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPKDVTDPKEDNYDLRKEAAY-NLHLIYKKSGNMQLAR 886 (895)
T ss_pred HHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCccccccccCCcccHHHHHHh-hhhhhhccCCcHHHHH
Confidence 55554222111 3458889999999999999999999985332 1 2334 4777888999999999
Q ss_pred HHHHHH
Q 006071 607 SILFKI 612 (662)
Q Consensus 607 ~~~~~~ 612 (662)
+++.+-
T Consensus 887 qil~ky 892 (895)
T KOG2076|consen 887 QILEKY 892 (895)
T ss_pred HHHHhh
Confidence 988763
No 31
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.83 E-value=1.2e-14 Score=132.37 Aligned_cols=437 Identities=12% Similarity=0.112 Sum_probs=285.2
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
.++++..|..+|+.++..+ ..+...|...+.+-.++..+..|..++++.+..-+. -...|.-.+-.--..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-VdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-VDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-HHHHHHHHHHHHHHhcccHHHH
Confidence 3557778888888888776 567778888888888888888888888887765322 2345555555556678888888
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006071 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (662)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 191 (662)
++|++..+ ..|+..+|.+.++.-.+...++.|..+++..+- +.|++.+|......-.+.|....+..+|+.....-
T Consensus 162 qiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~ 237 (677)
T KOG1915|consen 162 QIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL 237 (677)
T ss_pred HHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 88888776 468888888888888888888888888888765 45788888777777778888888888888776541
Q ss_pred C--CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHhcCCHHHHHHH--------HHHHhh
Q 006071 192 I--SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT--VISYTTMIKGYVAVERADDALRI--------FDEMKS 259 (662)
Q Consensus 192 ~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~ 259 (662)
- ..+...+++....-.++..++.|.-+|.-.... ++.+ ...|..+...--+-|+.....+. ++.+..
T Consensus 238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~ 316 (677)
T KOG1915|consen 238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS 316 (677)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence 0 112334445555555667778888888777654 2322 23344444433344543333222 233333
Q ss_pred CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcH-HHHHHHHHH--------HHhcCChHHHHHHHHHHHh
Q 006071 260 FDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN-SVFMKLLGV--------QCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 260 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~ 330 (662)
.+ +-|-.+|-..++.....|+.+...++|++++.. ++|... ..|...+-. -....+.+.+.++|...++
T Consensus 317 ~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~ 394 (677)
T KOG1915|consen 317 KN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD 394 (677)
T ss_pred hC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 32 456667777777777778888888888887765 333221 122221111 1235677777777777776
Q ss_pred CCCCCChhhHHHHHHHH----HcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHH
Q 006071 331 LSIPTEAGHYGILIENF----CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQL 406 (662)
Q Consensus 331 ~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 406 (662)
. +|....||..+--+| .++.++..|.+++..++ |..|-..++...|..-.+.++++.+..++++.
T Consensus 395 l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI----------G~cPK~KlFk~YIelElqL~efDRcRkLYEkf 463 (677)
T KOG1915|consen 395 L-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI----------GKCPKDKLFKGYIELELQLREFDRCRKLYEKF 463 (677)
T ss_pred h-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh----------ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3 455556655544443 34566777777776663 33456667777777777777888888888888
Q ss_pred HhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH
Q 006071 407 MKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS 485 (662)
Q Consensus 407 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 485 (662)
+.-+|.+..+|......-...|+.+.|..+|..+.+.. .......|...|+.-...|.++.|..+++++++.. +...
T Consensus 464 le~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~k 541 (677)
T KOG1915|consen 464 LEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVK 541 (677)
T ss_pred HhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccch
Confidence 87777777777777777777788888888887776642 12223556666776677777888888888777542 4444
Q ss_pred hHHHHH
Q 006071 486 LFRSVM 491 (662)
Q Consensus 486 ~~~~l~ 491 (662)
+|.++.
T Consensus 542 vWisFA 547 (677)
T KOG1915|consen 542 VWISFA 547 (677)
T ss_pred HHHhHH
Confidence 555544
No 32
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.83 E-value=3.4e-15 Score=134.11 Aligned_cols=423 Identities=17% Similarity=0.212 Sum_probs=275.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcC--ChhHH-HHHHHHHH----------------
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG--RYMMA-KRYFNKML---------------- 153 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g--~~~~A-~~~~~~~~---------------- 153 (662)
+-+.++.. ..+|.+.++.-+|+.|.+.|.+.++..-..|++.-+-.+ ++.-| .+.|-.|.
T Consensus 118 ~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vA 196 (625)
T KOG4422|consen 118 TENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVA 196 (625)
T ss_pred chhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHH
Confidence 44455543 467888888889999988887777776666655433211 11100 01111111
Q ss_pred ---hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC
Q 006071 154 ---SEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT 230 (662)
Q Consensus 154 ---~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 230 (662)
..-.+.+..+|..+|.++++....+.|..++++......+.+..+||.+|.+-.-..+ .+++.+|....+.||
T Consensus 197 dL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pn 272 (625)
T KOG4422|consen 197 DLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPN 272 (625)
T ss_pred HHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCc
Confidence 1113446778999999999999999999999999888788899999999987543322 789999999999999
Q ss_pred HhhHHHHHHHHHhcCCHHH----HHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHH-HHHHHHHHHHc-------CCC
Q 006071 231 VISYTTMIKGYVAVERADD----ALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVE-VQKVLREMVER-------YIP 298 (662)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~~~-------~~~ 298 (662)
..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..++.++... ...
T Consensus 273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~ 352 (625)
T KOG4422|consen 273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPIT 352 (625)
T ss_pred hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCC
Confidence 9999999999999998765 45788899999999999999999999988887644 55555555442 245
Q ss_pred CCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCC---hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhcc
Q 006071 299 PKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS----IPTE---AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR 371 (662)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 371 (662)
|.+...|...+..|.+..+.+.|.++..-+.... ++|+ ..-|..+....|+....+.-...|+.+
T Consensus 353 p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l-------- 424 (625)
T KOG4422|consen 353 PTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL-------- 424 (625)
T ss_pred CchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 6777888889999999999999998876665421 2333 233566777888888899999999999
Q ss_pred CCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH
Q 006071 372 PQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD 450 (662)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 450 (662)
.....-|+..+...++++..-.++++-.-.++.++...| ..+..... +++..+......|+..
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~e----------------eil~~L~~~k~hp~tp 488 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLRE----------------EILMLLARDKLHPLTP 488 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHH----------------HHHHHHhcCCCCCCCh
Confidence 444556777888888888888888888888888887765 32222222 2233333322222211
Q ss_pred ---hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-C---CCCHHHHH
Q 006071 451 ---AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKG-V---KENLDLVA 523 (662)
Q Consensus 451 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~---~~~~~~~~ 523 (662)
-+.....-|+. .-.+.....-.++.+..++ ....+..+-.+.+.|..++|.+++..+.+.+ - .|......
T Consensus 489 ~r~Ql~~~~ak~aa-d~~e~~e~~~~R~r~~~~~--~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~ 565 (625)
T KOG4422|consen 489 EREQLQVAFAKCAA-DIKEAYESQPIRQRAQDWP--ATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA 565 (625)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHhhHHHHHhccCC--hhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence 11111111110 1111112222333333332 2334445555666666666666666664431 1 22222233
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
-++..-.+..++..|+..++-+..
T Consensus 566 El~d~a~~~~spsqA~~~lQ~a~~ 589 (625)
T KOG4422|consen 566 ELMDSAKVSNSPSQAIEVLQLASA 589 (625)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 444555556666666666666644
No 33
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.82 E-value=3.7e-14 Score=129.24 Aligned_cols=470 Identities=10% Similarity=0.092 Sum_probs=333.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 90 DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 90 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
+...|......-..++++..|..+|+++.... ..+...|...+..-+++.....|..+++..+..=+..|. .|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 55666666666667778888888888887754 456667777778888888888888888888764222222 3333444
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (662)
.--..|++..|.++|+.-... .|+...|++.+..-.+.+.++.|..+++...-. .|++.+|.-....-.++|+...
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 444568888888888887765 778888888888888888888888888887763 5888888888888888888888
Q ss_pred HHHHHHHHhhC-C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChHHHHHH-
Q 006071 250 ALRIFDEMKSF-D-VKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKD--NSVFMKLLGVQCKSGHLNAAADV- 324 (662)
Q Consensus 250 a~~~~~~~~~~-~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~- 324 (662)
+..+|....+. | -..+...+.++...-.+...++.|.-+|+-.++. -|.+ ...|..+...--+-|+.....+.
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 88888877653 1 0112233444444444667788888888888776 3333 45566666655566765544433
Q ss_pred -------HHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc--ccHHHHH--------
Q 006071 325 -------LKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA--SSYNPMI-------- 387 (662)
Q Consensus 325 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~-------- 387 (662)
|+.....+ +.|-.+|-..+..--..|+.+...++|+.++.. ++|-. ..|...+
T Consensus 304 v~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan---------vpp~~ekr~W~RYIYLWinYal 373 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN---------VPPASEKRYWRRYIYLWINYAL 373 (677)
T ss_pred hhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc---------CCchhHHHHHHHHHHHHHHHHH
Confidence 34444443 677788888888888888999999999887532 22211 1222222
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHH----HHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC
Q 006071 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL----IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG 463 (662)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 463 (662)
-.-....+++.+.++|+..++.-|....||..+ .....++.++..|.+++.... |..|...++...|..-.+.+
T Consensus 374 yeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~ 451 (677)
T KOG1915|consen 374 YEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLR 451 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHh
Confidence 112356889999999999988666665665544 344457889999999998776 45789999999999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 464 EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 464 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
+++....++++.++-+ +-+..+|......-...|+.+.|..+|.-+++.. .......|.+.+..-...|.++.|..++
T Consensus 452 efDRcRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LY 530 (677)
T KOG1915|consen 452 EFDRCRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALY 530 (677)
T ss_pred hHHHHHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHH
Confidence 9999999999999754 3356788888887788999999999999998873 3434566778888888999999999999
Q ss_pred HHHHh-CCCCCCHHHHHHHHh-----ccC-----------CHHHHHHHHHHHhcC
Q 006071 543 DLMMQ-SGSVPNFDSLLSVLS-----EKG-----------KTIAAVKLLDFCLGR 580 (662)
Q Consensus 543 ~~~~~-~~~~p~~~~~~~~~~-----~~g-----------~~~~A~~~~~~~~~~ 580 (662)
+++++ ....+.+.+++..-. ..| ....|..+|+++...
T Consensus 531 erlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~ 585 (677)
T KOG1915|consen 531 ERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY 585 (677)
T ss_pred HHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence 99997 333444444433221 234 567788888877653
No 34
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=3.1e-15 Score=134.36 Aligned_cols=463 Identities=13% Similarity=0.168 Sum_probs=310.2
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHH--HHhcCChHHH-HHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEI--LGRVGKLNHA-RCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
..+|.++.+.-+|+.|...+ .+.++..-..+++. |....++.-| .+.|-.|.+.|-. +..+| +.|.+
T Consensus 126 IS~~EvKDs~ilY~~m~~e~-~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW--------K~G~v 195 (625)
T KOG4422|consen 126 ISSREVKDSCILYERMRSEN-VDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW--------KSGAV 195 (625)
T ss_pred HhhcccchhHHHHHHHHhcC-CCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc--------ccccH
Confidence 35677788888888887776 56666665555543 2233333322 3445555554432 23333 44444
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 187 (662)
.+ ++-+.. +.+..++..+|.++++--..+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.+|
T Consensus 196 Ad---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EM 264 (625)
T KOG4422|consen 196 AD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEM 264 (625)
T ss_pred HH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHH
Confidence 43 333322 5678899999999999999999999999998777788999999999765432 237889999
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChHHH----HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH-HHHHHHHHhh---
Q 006071 188 KSRGISLDVVTYNTMINGYNRFKKMDEA----EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD-ALRIFDEMKS--- 259 (662)
Q Consensus 188 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~--- 259 (662)
......||..|+|+++++..+.|+++.| .+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++..
T Consensus 265 isqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~lt 344 (625)
T KOG4422|consen 265 ISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLT 344 (625)
T ss_pred HHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhc
Confidence 9999999999999999999999988764 5788889999999999999999999999888754 4445555432
Q ss_pred -CCCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC---CCCC---cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 260 -FDVK----PNAVTYTALLPGLCDAGKMVEVQKVLREMVERY---IPPK---DNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 260 -~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
..++ .|...|...+..|.+..+.+.|.++..-+.... ..++ ....|..+....++....+.....|+.+
T Consensus 345 GK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~l 424 (625)
T KOG4422|consen 345 GKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDL 424 (625)
T ss_pred cCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1122 245667888889999999999988876654321 1121 2335667788888889999999999999
Q ss_pred HhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006071 329 IRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMK 408 (662)
Q Consensus 329 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 408 (662)
.-.-.-|+..+...++++.--.+.++-.-+++.+++.-+. +++. +.-++++..+..
T Consensus 425 VP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~gh-------------t~r~-----------~l~eeil~~L~~ 480 (625)
T KOG4422|consen 425 VPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGH-------------TFRS-----------DLREEILMLLAR 480 (625)
T ss_pred ccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhh-------------hhhH-----------HHHHHHHHHHhc
Confidence 8887788999999999999889999999899988854331 2222 222334444444
Q ss_pred cC-CCCHH---HHHHHHHHHHhcCChhHH-HHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC---
Q 006071 409 KG-VLDPV---AFNNLIRGHSKEGNPDSA-FEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGH--- 480 (662)
Q Consensus 409 ~~-~~~~~---~~~~l~~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 480 (662)
.. .|+.. -+.....-|+. ++.++ ...-.++.+.. ......+.++-.+.+.|..++|.+++..+.+.+-
T Consensus 481 ~k~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip 556 (625)
T KOG4422|consen 481 DKLHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIP 556 (625)
T ss_pred CCCCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCC
Confidence 33 22111 22222221111 22222 22233444433 4456677788888899999999999988865432
Q ss_pred -CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 481 -SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 481 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
.|.......++++....++...|..+++-+...+...-...-+.+...|.-...-.+|+.-+
T Consensus 557 ~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~l 619 (625)
T KOG4422|consen 557 RSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSNL 619 (625)
T ss_pred CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhhh
Confidence 23334444667777888889999999998877655433334444555444443334444433
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.79 E-value=1.7e-15 Score=137.01 Aligned_cols=468 Identities=14% Similarity=0.093 Sum_probs=296.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC----HHHHHHHHHHHHhcCChhH
Q 006071 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD----EDMFEVLIESYGKKGIVQE 109 (662)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~ 109 (662)
.-..+|+..|+-+.+..-+|.....-..+..++.+.+++.+|+++++.....-+..+ ..+.+.+...+.+.|++++
T Consensus 215 dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~d 294 (840)
T KOG2003|consen 215 DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDD 294 (840)
T ss_pred HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchh
Confidence 356678888877766654544444444566777888888888888876665433222 3345555566778888888
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC------------cCHHHHHHHHHH-----HH
Q 006071 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE------------PTRHTYNVMLWG-----FF 172 (662)
Q Consensus 110 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~~ll~~-----~~ 172 (662)
|+.-|+...+. .|+..+-..|+-++.--|+.++..+.|.+|+..... |+....+..+.. .-
T Consensus 295 ainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~e 372 (840)
T KOG2003|consen 295 AINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNME 372 (840)
T ss_pred hHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHH
Confidence 88888887764 366655444454555668888888888888654222 222222222211 00
Q ss_pred hcCCHHHHHHHHHH---HHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006071 173 LSLKLETAIRFFED---MKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (662)
Q Consensus 173 ~~~~~~~a~~~~~~---~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (662)
+. +-..|.+..-. +..--+.|+-.. -.+-+.+.+..-... +.-...-..-...+.+.|+++.
T Consensus 373 k~-~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 373 KE-NKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHA--ELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred Hh-hhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhccCHHH
Confidence 00 00111111111 111111111000 001111111111100 0000111112345778999999
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHH--HHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006071 250 ALRIFDEMKSFDVKPNAVTYTAL--LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
|+++++-+.+..-+.-...-+.+ +..+.--.++..|.++-+..+.. +.-+..+...-......+|++++|.+.|++
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~--dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI--DRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc--cccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 99999888654322222222322 22222344677777777766553 222444444445555678999999999999
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006071 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (662)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (662)
.+..........|+. .-.+-..|++++|+++|-++...- ..+...+..+...|....+...|++++-+..
T Consensus 516 al~ndasc~ealfni-glt~e~~~~ldeald~f~klh~il---------~nn~evl~qianiye~led~aqaie~~~q~~ 585 (840)
T KOG2003|consen 516 ALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAIL---------LNNAEVLVQIANIYELLEDPAQAIELLMQAN 585 (840)
T ss_pred HHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHH---------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence 987543333333332 334667899999999998874332 1345566677778888899999999999988
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhH
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF 487 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 487 (662)
..-|.+|.+.+.|...|-+.|+-..|.+.+-.--+. ++.+..+...|...|....-++.++..|++.. -+.|+..-|
T Consensus 586 slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kw 662 (840)
T KOG2003|consen 586 SLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKW 662 (840)
T ss_pred ccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHH
Confidence 888999999999999999999999998876555443 56688899999999999999999999999876 467999999
Q ss_pred HHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC
Q 006071 488 RSVMESLF-EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGH 534 (662)
Q Consensus 488 ~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 534 (662)
..++..|. +.|++++|..+++...+. +..+..++.-|++.+...|-
T Consensus 663 qlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 663 QLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 88887765 589999999999998776 44488888888888877774
No 36
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.74 E-value=1.6e-11 Score=116.59 Aligned_cols=541 Identities=12% Similarity=0.130 Sum_probs=322.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccC-CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKK-GVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
.-+..|...++.+.++|+....+..|+..... .+.....+|...+......|-++-+..++++..+ .++..-...
T Consensus 100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eey 175 (835)
T KOG2047|consen 100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEY 175 (835)
T ss_pred cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHH
Confidence 34456666677777777777777777665442 1222344666666666666777777777777765 344445566
Q ss_pred HHHHHHcCChhHHHHHHHHHHhC------CCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCCCC--HHHHHH
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSE------GIEPTRHTYNVMLWGFFLSLKL---ETAIRFFEDMKSRGISLD--VVTYNT 201 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~--~~~~~~ 201 (662)
+..++..+++++|.+.+...+.. .-+.+...|..+....++..+. -.+..++..+..+ -+| ...|++
T Consensus 176 ie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~S 253 (835)
T KOG2047|consen 176 IEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCS 253 (835)
T ss_pred HHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHH
Confidence 66667777777777766665432 1123444455544444433222 2233444444433 223 345677
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC----------------------CHHHHHHHHHHHhh
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE----------------------RADDALRIFDEMKS 259 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~ 259 (662)
|.+.|.+.|.++.|..+|++.... ..++.-|..+..+|+.-. +++-...-|+.+..
T Consensus 254 LAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~ 331 (835)
T KOG2047|consen 254 LADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMN 331 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHh
Confidence 777777777777777777776543 123333444444443221 11222223333322
Q ss_pred CC-----------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-----cHHHHHHHHHHHHhcCChHHHHH
Q 006071 260 FD-----------VKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK-----DNSVFMKLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 260 ~~-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~ 323 (662)
.+ -+-+...|..-.. +..|+..+....+.++++. +.|. -...|..+...|-..|+++.|..
T Consensus 332 rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRv 408 (835)
T KOG2047|consen 332 RRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARV 408 (835)
T ss_pred ccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHH
Confidence 11 1223334443333 3457778888888888775 3331 23578889999999999999999
Q ss_pred HHHHHHhCCCCCC---hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhcc---CCCCCC------CccccHHHHHHHHH
Q 006071 324 VLKAMIRLSIPTE---AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILR---PQSTLD------MEASSYNPMIQHLC 391 (662)
Q Consensus 324 ~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~------~~~~~~~~l~~~~~ 391 (662)
+|++..+...+.- ..+|-.-..+=.+..+++.|+++.+.......... -+.+.+ .+...|...++..-
T Consensus 409 ifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleE 488 (835)
T KOG2047|consen 409 IFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEE 488 (835)
T ss_pred HHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 9999887543322 23344444455566778888888877743221100 000111 12334566666666
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHh---cCChHH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA-DAYICLIESYLR---KGEPAD 467 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~ 467 (662)
..|-++....+++++......+|.........+-...-++++.+++++-...-..|+. ..|+..+.-+.+ ....+.
T Consensus 489 s~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEr 568 (835)
T KOG2047|consen 489 SLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLER 568 (835)
T ss_pred HhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHH
Confidence 7788999999999999998778887777777777778889999999887765344554 677777766654 246799
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 468 AKTALDSMIEDGHSPASSLFRSVME--SLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRID 543 (662)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 543 (662)
|..+|++.++ |.+|...-..-++- .-.+.|....|+++++++... +++ -...|+.++.--...=-+....++|+
T Consensus 569 aRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYe 646 (835)
T KOG2047|consen 569 ARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYE 646 (835)
T ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHH
Confidence 9999999998 77665432222222 223468889999999997654 332 23445554432222222333455666
Q ss_pred HHHhCCCCCCHH------HHHHHHhccCCHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 544 LMMQSGSVPNFD------SLLSVLSEKGKTIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (662)
Q Consensus 544 ~~~~~~~~p~~~------~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
+..+ .-|+.. .+.+.-.+.|..+.|+.++..+.+. +|..+...|...-.-=.+.|+-+--.+.+
T Consensus 647 kaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 647 KAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 6666 344422 2444555789999999999977775 34445666765555557889844443333
No 37
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.72 E-value=2.6e-13 Score=123.14 Aligned_cols=476 Identities=12% Similarity=0.081 Sum_probs=298.9
Q ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHH
Q 006071 128 SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYN-VMLWGFFLSLKLETAIRFFEDMKSRGISLD----VVTYNTM 202 (662)
Q Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l 202 (662)
....|.+.|..+....+|+..|+-+++...-|+..... .+-..+.+...+.+|+++|......-+..+ +...+.+
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 33445556666777888999998888776667655432 233456677888999999988776522222 3345555
Q ss_pred HHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC------------CHHHHH
Q 006071 203 INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP------------NAVTYT 270 (662)
Q Consensus 203 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~------------~~~~~~ 270 (662)
...+.+.|.++.|...|+...+. .|+..+-..|+-++...|+.++..+.|..|+..-..| +....+
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ 360 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN 360 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence 56678899999999999988775 5788777777778888899999999999987532222 222222
Q ss_pred HHHHH-----HHhCCCHHHHHHHHH---HHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 271 ALLPG-----LCDAGKMVEVQKVLR---EMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 271 ~ll~~-----~~~~g~~~~a~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
..+.. .-+ .+-..|++..- +++.--+.| + |.. | .+-+.+.++..... +.-...--.
T Consensus 361 eai~nd~lk~~ek-~~ka~aek~i~ta~kiiapvi~~-~---fa~--------g-~dwcle~lk~s~~~--~la~dlei~ 424 (840)
T KOG2003|consen 361 EAIKNDHLKNMEK-ENKADAEKAIITAAKIIAPVIAP-D---FAA--------G-CDWCLESLKASQHA--ELAIDLEIN 424 (840)
T ss_pred HHHhhHHHHHHHH-hhhhhHHHHHHHHHHHhcccccc-c---hhc--------c-cHHHHHHHHHhhhh--hhhhhhhhh
Confidence 22211 111 11111222211 111111111 1 100 0 01112222111110 000001111
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHH--HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN--PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNL 420 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l 420 (662)
-...|.+.|+++.|+++++-+...+. +.....-+ +++.......++..|.++-+........++...+.-
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdn--------k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nk 496 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDN--------KTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNK 496 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccc--------hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcC
Confidence 23457789999999999887743221 11111111 122222224577788888888777766677666665
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCH
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRV 500 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (662)
...-...|++++|.+.+++.......-....|+ +.-.+-..|+.++|+.+|-++-.- +..+..++..+...|....+.
T Consensus 497 gn~~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~ 574 (840)
T KOG2003|consen 497 GNIAFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDP 574 (840)
T ss_pred CceeeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCH
Confidence 665667899999999999998753222223333 233466789999999999876531 234566777788888889999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHH-hccCCHHHHHHHHHH
Q 006071 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVL-SEKGKTIAAVKLLDF 576 (662)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~-~~~g~~~~A~~~~~~ 576 (662)
..|++++-+.... +..++..+..|...|-+.|+-..|.+..-.-- .+-|. ...|+.+| ....-+++|+.+|++
T Consensus 575 aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsy--ryfp~nie~iewl~ayyidtqf~ekai~y~ek 651 (840)
T KOG2003|consen 575 AQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSY--RYFPCNIETIEWLAAYYIDTQFSEKAINYFEK 651 (840)
T ss_pred HHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcc--cccCcchHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 9999999888765 44478889999999999999999988654332 24444 23344444 466778899999998
Q ss_pred HhcCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCc
Q 006071 577 CLGRDCIIDLASYE-KVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNT 637 (662)
Q Consensus 577 ~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (662)
+.-. .|+-.-|. .++.++.+.|++..|++.++.+..+- +.+..-...|++.+-..|-.
T Consensus 652 aali--qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf-pedldclkflvri~~dlgl~ 710 (840)
T KOG2003|consen 652 AALI--QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF-PEDLDCLKFLVRIAGDLGLK 710 (840)
T ss_pred HHhc--CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-ccchHHHHHHHHHhccccch
Confidence 7765 45555554 35566677999999999999988764 34666666777777777654
No 38
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.68 E-value=1.3e-12 Score=114.75 Aligned_cols=225 Identities=11% Similarity=0.079 Sum_probs=145.7
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHH-H----hcCCHHHH
Q 006071 429 NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESL-F----EDGRVQTA 503 (662)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~----~~g~~~~a 503 (662)
+-+.|++++-.+.+. - +..-..++-.|.+.+++.+|..+.+++. ...|-......+..+- . .......|
T Consensus 269 ngEgALqVLP~L~~~--I--PEARlNL~iYyL~q~dVqeA~~L~Kdl~--PttP~EyilKgvv~aalGQe~gSreHlKiA 342 (557)
T KOG3785|consen 269 NGEGALQVLPSLMKH--I--PEARLNLIIYYLNQNDVQEAISLCKDLD--PTTPYEYILKGVVFAALGQETGSREHLKIA 342 (557)
T ss_pred CCccHHHhchHHHhh--C--hHhhhhheeeecccccHHHHHHHHhhcC--CCChHHHHHHHHHHHHhhhhcCcHHHHHHH
Confidence 446677776665553 2 2333455666788888888888887764 3334333333333221 1 11224456
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 504 SRVMKSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 504 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
...|+..-+.+..- +...-..+..++.-..++++.+.+++.+...-...| ...++.+.+..|++.+|.++|-+....
T Consensus 343 qqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~ 422 (557)
T KOG3785|consen 343 QQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGP 422 (557)
T ss_pred HHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcCh
Confidence 66665543332211 222234455666666789999999998887544444 235778888899999999999766554
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhH-HHHHHHHHhcCCcchhHHHHHHhhhhccccchhhh
Q 006071 581 DCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSS-DKLIAGLNQEGNTKQADILSRMIRGEMSRGSQKEK 659 (662)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 659 (662)
...+.......++++|.+.|+++-|.+++-++-..+ +.-+. .-+...|.+.+++--|.....+++.++++|+-|+.
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWeG 499 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWEG 499 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccCC
Confidence 434444444578899999999999998876643222 22222 23445589999999998999999999999999999
Q ss_pred hcC
Q 006071 660 KQK 662 (662)
Q Consensus 660 ~~~ 662 (662)
||+
T Consensus 500 KRG 502 (557)
T KOG3785|consen 500 KRG 502 (557)
T ss_pred ccc
Confidence 985
No 39
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.67 E-value=2.8e-11 Score=115.38 Aligned_cols=460 Identities=13% Similarity=0.099 Sum_probs=316.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
..+++...+++.+.+++.. |...++.....-.+...|+-++|........+.++. +..+|..+.-.+....++++|+
T Consensus 19 E~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhhhhhHHHHH
Confidence 5789999999999999864 777788877777788899999999999888876655 7789999988888889999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006071 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (662)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 191 (662)
+.|..+...+ +.|...|.-+.-.-.+.|+++........+.+. .+.....|..+..++.-.|+...|..+++...+..
T Consensus 96 Kcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql-~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL-RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999876 466777877777777889999988888888775 23345677888888888899999999999988764
Q ss_pred -CCCCHHHHHHHH------HHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006071 192 -ISLDVVTYNTMI------NGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264 (662)
Q Consensus 192 -~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (662)
..|+...+.... ....+.|.++.|.+.+..-... +......-.+-...+.+.+++++|..++..++.. .|
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nP 250 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NP 250 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--Cc
Confidence 245655554332 3456778888888887765543 1112223345567788899999999999999886 57
Q ss_pred CHHHHHHHHHHHH-hCCCHHHHH-HHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 265 NAVTYTALLPGLC-DAGKMVEVQ-KVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 265 ~~~~~~~ll~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
|...|...+..+. +..+.-++. .+|....+. .|........-+.......-.+..-.++....+.|+|+- +..
T Consensus 251 dn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~d 325 (700)
T KOG1156|consen 251 DNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKD 325 (700)
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhh
Confidence 7766665554444 333434444 666655443 221111111111111122223445566677777776653 444
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCC----------CCCCCccccHH--HHHHHHHhcCChhHHHHHHHHHHhcC
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQ----------STLDMEASSYN--PMIQHLCHNGQTGKAEIFFRQLMKKG 410 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (662)
+...|-.-...+ ++++++-........ ..-+|+...|+ .++..+-..|+++.|..+++.+..+.
T Consensus 326 l~SLyk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT 401 (700)
T KOG1156|consen 326 LRSLYKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT 401 (700)
T ss_pred hHHHHhchhHhH----HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 444443322222 222222111100011 11245555554 45667788999999999999999998
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-----
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS----- 485 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----- 485 (662)
|.-+..|..-.+.+...|++++|..++++..+.+ .+|...-.-.+.-..++++.++|.++...+.+.|. +..
T Consensus 402 PTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~ 478 (700)
T KOG1156|consen 402 PTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAE 478 (700)
T ss_pred chHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHH
Confidence 8888888888999999999999999999999875 34666555677788899999999999999987764 221
Q ss_pred ---hHHHH--HHHHHhcCCHHHHHHHHHHHH
Q 006071 486 ---LFRSV--MESLFEDGRVQTASRVMKSMV 511 (662)
Q Consensus 486 ---~~~~l--~~~~~~~g~~~~a~~~~~~~~ 511 (662)
.|..+ ..+|.+.|++..|++-|..+-
T Consensus 479 mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 479 MQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred hhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 22222 246777888877776666543
No 40
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.67 E-value=2.6e-12 Score=118.04 Aligned_cols=420 Identities=15% Similarity=0.100 Sum_probs=260.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHH
Q 006071 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTV-ISYTTMIKGY 241 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~ 241 (662)
+.....-|.+.|.+++|++.|...... .|| ...|.....+|...|+|+++.+--....+. .|+- ..+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHH
Confidence 333445566778888888888888876 456 667777778888888888887777666664 3443 3555566677
Q ss_pred HhcCCHHHHHHHHHHHh-hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC--cHHHHHHHHHHHHhcCCh
Q 006071 242 VAVERADDALRIFDEMK-SFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK--DNSVFMKLLGVQCKSGHL 318 (662)
Q Consensus 242 ~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 318 (662)
-..|++++|+.=..-.. -.|+. |..+-..+=+.+ -..+..-.++-...+..|. +..........+...
T Consensus 194 E~lg~~~eal~D~tv~ci~~~F~-n~s~~~~~eR~L-----kk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~--- 264 (606)
T KOG0547|consen 194 EQLGKFDEALFDVTVLCILEGFQ-NASIEPMAERVL-----KKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD--- 264 (606)
T ss_pred HhhccHHHHHHhhhHHHHhhhcc-cchhHHHHHHHH-----HHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc---
Confidence 77777776653222111 11111 111111111111 1122222222222111220 222222222222110
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHH----Hc-CCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHH-----
Q 006071 319 NAAADVLKAMIRLSIPTEAGHYGILIENF----CK-AEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQ----- 388 (662)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----- 388 (662)
.......+.......+..++ .. ...+..|...+.+-........... ..|... ..+..
T Consensus 265 ---------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n--~~d~~l-e~~A~al~~~ 332 (606)
T KOG0547|consen 265 ---------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVN--EIDAEL-EYMAEALLLR 332 (606)
T ss_pred ---------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhcccc--ccchhH-HHHHHHHHHh
Confidence 00000001111111111111 11 1134444444433322111000000 011111 12222
Q ss_pred --HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChH
Q 006071 389 --HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA 466 (662)
Q Consensus 389 --~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (662)
-+.-.|+.-.|..-|+..+...+.+...|-.+..+|....+.++....|....+.+.. ++.+|..-...+.-.++++
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHH
Confidence 2334589999999999999998766666888889999999999999999999987644 7788888888888889999
Q ss_pred HHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 467 DAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
+|..-|++.++. .|+ ...+..+..+..+.+.+++++..|++..++=+. -++.|+.....+...++++.|++.|+..
T Consensus 412 ~A~aDF~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 412 EAIADFQKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred HHHHHHHHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 999999999864 354 456667777778899999999999999887443 6788999999999999999999999988
Q ss_pred HhCCCCCC-------HHHHH----HHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 546 MQSGSVPN-------FDSLL----SVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 546 ~~~~~~p~-------~~~~~----~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
.+ +.|. ...++ -.+.-.+++..|..+++++++.+|..+. .|..|+......|+.++|+++|++...
T Consensus 489 i~--LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~-A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 489 IE--LEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKCEQ-AYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred Hh--hccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchHHH-HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 87 3333 11121 1222458999999999999999765544 467899999999999999999999664
Q ss_pred c
Q 006071 615 K 615 (662)
Q Consensus 615 ~ 615 (662)
-
T Consensus 566 l 566 (606)
T KOG0547|consen 566 L 566 (606)
T ss_pred H
Confidence 4
No 41
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.67 E-value=5.3e-10 Score=106.63 Aligned_cols=571 Identities=9% Similarity=0.048 Sum_probs=367.7
Q ss_pred CCHHHHHHHH--HHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 34 KNSEHALQFF--RWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 34 ~~~~~A~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
|+++-=...+ ++..-.+ ..|+...|..+=+++ +.+.-.+.+|++ +|...+.....+|++....
T Consensus 58 ~sykiW~~YL~~R~~~vk~-~~~T~~~~~~vn~c~------er~lv~mHkmpR--------Iwl~Ylq~l~~Q~~iT~tR 122 (835)
T KOG2047|consen 58 GSYKIWYDYLKARRAQVKH-LCPTDPAYESVNNCF------ERCLVFMHKMPR--------IWLDYLQFLIKQGLITRTR 122 (835)
T ss_pred CchHHHHHHHHHHHHHhhc-cCCCChHHHHHHHHH------HHHHHHHhcCCH--------HHHHHHHHHHhcchHHHHH
Confidence 4444333333 4444444 456666666655443 444444445543 7888889999999999999
Q ss_pred HHHHHHHHc-CCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 112 KIFDIMKQL-GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 112 ~~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
..|+..... .+......|...+......+-++-+..++++.++. ++..-+..+..+++.+++++|.+.+...+..
T Consensus 123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~ 198 (835)
T KOG2047|consen 123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQ 198 (835)
T ss_pred HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence 999987653 34445668999999998999999999999999764 3334677788889999999999999888643
Q ss_pred ------CCCCCHHHHHHHHHHHhhcCChH---HHHHHHHHHHHCCCCCCH--hhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006071 191 ------GISLDVVTYNTMINGYNRFKKMD---EAEKLFAEMKEKNIEPTV--ISYTTMIKGYVAVERADDALRIFDEMKS 259 (662)
Q Consensus 191 ------~~~~~~~~~~~ll~~~~~~g~~~---~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (662)
..+.+-..|..+.+..++.-+.- ....+++.+... -+|. ..|++|..-|++.|.+++|..+|++...
T Consensus 199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~ 276 (835)
T KOG2047|consen 199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ 276 (835)
T ss_pred hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 23446778888877777654433 344555555543 2343 5799999999999999999999999876
Q ss_pred CCCCCCHHHHHHHHHHHHhC----------------C------CHHHHHHHHHHHHHcC----------CCCCcHHHHHH
Q 006071 260 FDVKPNAVTYTALLPGLCDA----------------G------KMVEVQKVLREMVERY----------IPPKDNSVFMK 307 (662)
Q Consensus 260 ~~~~~~~~~~~~ll~~~~~~----------------g------~~~~a~~~~~~~~~~~----------~~~~~~~~~~~ 307 (662)
. ..+..-|..+.++|+.. | +++-.+.-|+.+...+ -.|.+...|..
T Consensus 277 ~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k 354 (835)
T KOG2047|consen 277 T--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHK 354 (835)
T ss_pred h--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHh
Confidence 4 23444445555444321 1 1233344444444331 12333333433
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCC------hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccc
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIRLSIPTE------AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS 381 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (662)
-+. ...|+..+-...|.++.+. +.|. ...|..+...|-..|+++.|..+|++...... ..+.-=..
T Consensus 355 RV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y-----~~v~dLa~ 426 (835)
T KOG2047|consen 355 RVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY-----KTVEDLAE 426 (835)
T ss_pred hhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc-----cchHHHHH
Confidence 333 3356777778888887764 2221 23577788889999999999999999854321 11111123
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCC------------------CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGV------------------LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------------------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
+|..-...-.+..+++.|..+++++..... .+...|..+++..-..|-++....+++.+.+.
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 444444555567888999998888765441 13346677777777888999999999999987
Q ss_pred CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCH
Q 006071 444 GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFE---DGRVQTASRVMKSMVEKGVKENL 519 (662)
Q Consensus 444 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~ 519 (662)
.+. ++..-......+-.+.-++++.+++++-+..-..|+ ...|+..+.-+.+ .-..+.|..+|++.++ +..|..
T Consensus 507 ria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~ 584 (835)
T KOG2047|consen 507 RIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEH 584 (835)
T ss_pred hcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHH
Confidence 665 565555556666677778999999988665332344 3456666655443 3468999999999998 454443
Q ss_pred HHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHhc----cCCHHHHHHHHHHHhcCCCCCC-hhhHHH
Q 006071 520 DLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIID-LASYEK 591 (662)
Q Consensus 520 ~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ 591 (662)
.-+ -.....--+.|-...|+.++++... +.++. .-.+...|.+ .--....+.+++++++.-+... ......
T Consensus 585 aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclr 663 (835)
T KOG2047|consen 585 AKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLR 663 (835)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHH
Confidence 322 2222223356888899999998765 34443 2233344331 1123345777888888744433 333445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHhcCCcc
Q 006071 592 VLDALLAAGKTLNAYSILFKIMEKGGVT-DWKSSDKLIAGLNQEGNTK 638 (662)
Q Consensus 592 l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 638 (662)
.++.=.+.|..+.|..++....+-.++. +..-|..--.-=.++|+-+
T Consensus 664 FAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 664 FADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 6677788999999999999988776553 2222222223345677733
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=7.7e-16 Score=143.88 Aligned_cols=258 Identities=18% Similarity=0.212 Sum_probs=71.7
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCc
Q 006071 273 LPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEM 352 (662)
Q Consensus 273 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 352 (662)
...+...|++++|.++++.......+|.+...|..+.......++++.|...++.+...+ +.++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccccc
Confidence 445555566666666664443332234455555555555555666666666666665543 2233444444444 45556
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCCh
Q 006071 353 YDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNP 430 (662)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 430 (662)
+++|..+++...+.. ++...+..++..+...++++++..+++.+.... +.++..|..+...+.+.|+.
T Consensus 93 ~~~A~~~~~~~~~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~ 162 (280)
T PF13429_consen 93 PEEALKLAEKAYERD----------GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP 162 (280)
T ss_dssp -----------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH
T ss_pred ccccccccccccccc----------cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH
Confidence 666665555443211 233344445555555556666665555554433 34555555555555666666
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (662)
++|.+.+++..+..+ .|......++..+...|+.+++..+++...+.. +.|...+..+..++...|+.++|..++++.
T Consensus 163 ~~A~~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~ 240 (280)
T PF13429_consen 163 DKALRDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKA 240 (280)
T ss_dssp HHHHHHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccc
Confidence 666666666555421 134555555555555566655555555555432 233344455555555566666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 511 VEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 511 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
.+.++. |+.....++.++...|+.++|.++.+++
T Consensus 241 ~~~~p~-d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 241 LKLNPD-DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHSTT--HHHHHHHHHHHT---------------
T ss_pred cccccc-cccccccccccccccccccccccccccc
Confidence 554443 4555555556666666666666555544
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.3e-12 Score=119.98 Aligned_cols=418 Identities=14% Similarity=0.059 Sum_probs=257.7
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhh
Q 006071 131 ALFKLILRRGRYMMAKRYFNKMLSEGIEPT-RHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNR 208 (662)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~ 208 (662)
...+-|.++|++++|++.|.+.+.. .|+ +..|.....+|...|+++++.+-....++. .|+ +..+..-..++-.
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ 195 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence 3445677888899999999888874 456 677788888888889998888888877775 333 4555666677777
Q ss_pred cCChHHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 209 FKKMDEAEKLFAEMKEK-NIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD--VKPNAVTYTALLPGLCDAGKMVEV 285 (662)
Q Consensus 209 ~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a 285 (662)
.|++++|+.=+.-..-. |+. |..+ ..++.-..+.--...+.+-+ ...+ +-|+.....+....+...-..
T Consensus 196 lg~~~eal~D~tv~ci~~~F~-n~s~-~~~~eR~Lkk~a~~ka~e~~---k~nr~p~lPS~~fi~syf~sF~~~~~~--- 267 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQ-NASI-EPMAERVLKKQAMKKAKEKL---KENRPPVLPSATFIASYFGSFHADPKP--- 267 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcc-cchh-HHHHHHHHHHHHHHHHHHhh---cccCCCCCCcHHHHHHHHhhccccccc---
Confidence 78877775432222211 111 1111 11111111100011111111 1111 334544444444333210000
Q ss_pred HHHHHHHHHcCCCCCcHHHHHHHHHHHHh-cCChHHHHHHHHHHHhCC-CC-----CC------hhhHHHHHHHHHcCCc
Q 006071 286 QKVLREMVERYIPPKDNSVFMKLLGVQCK-SGHLNAAADVLKAMIRLS-IP-----TE------AGHYGILIENFCKAEM 352 (662)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~-~~-----~~------~~~~~~l~~~~~~~~~ 352 (662)
.+...+ +..|...-..+-..+.. ...+..|...+.+-.... .. .| ..+...-...+.-.|+
T Consensus 268 -----~~~~~~-~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 268 -----LFDNKS-DKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred -----cccCCC-ccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 000000 00000000000000000 012233333322211100 00 01 1111222223345688
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhH
Q 006071 353 YDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDS 432 (662)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 432 (662)
.-.|...|+..+... + .+...|-.+...|....+.++....|..+.+.+|.++.+|..-.+++.-.+++++
T Consensus 342 ~~~a~~d~~~~I~l~----~-----~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLD----P-----AFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred chhhhhhHHHHHhcC----c-----ccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHH
Confidence 888888888886543 1 1222377778889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 433 AFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVE 512 (662)
Q Consensus 433 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 512 (662)
|..-|++.....+. +...|..+..+..+.++++++...|++..+ .++..+..|+.....+...++++.|.+.|+..++
T Consensus 413 A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999987533 677888888888899999999999999987 4666678888899999999999999999999987
Q ss_pred cCCC-----CCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 513 KGVK-----ENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 513 ~~~~-----~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
..+. .+...+ ..++..- =.+++..|++++++..+ ++|. ..+++....+.|+.++|+++|++++..
T Consensus 491 LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 491 LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 6333 122222 2222222 23789999999999988 6665 346777777899999999999988765
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.66 E-value=1e-15 Score=143.04 Aligned_cols=258 Identities=13% Similarity=0.139 Sum_probs=59.5
Q ss_pred HHHHHhcCChHHHHHHHHhcccCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC
Q 006071 63 IEILGRVGKLNHARCILLDMPKKG-VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR 141 (662)
Q Consensus 63 ~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 141 (662)
...+.+.|++++|.+++....... .+.++..|..+.......++++.|.+.++++...+. -++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 444444444444444443322221 122333333344444444444444444444444331 133333334433 34444
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHhhcCChHHHHHHHH
Q 006071 142 YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFA 220 (662)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 220 (662)
+++|.+++.+..+.. +++..+..++..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.++
T Consensus 93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 444444444433321 233333444444444445554444444443321 12234444444444444555555555555
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 006071 221 EMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (662)
Q Consensus 221 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 300 (662)
+..+.. |.|....+.++..+...|+.+++.++++...... +.|+..+..+..++...|+.++|..++++.... .|.
T Consensus 171 ~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~--~p~ 246 (280)
T PF13429_consen 171 KALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL--NPD 246 (280)
T ss_dssp HHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc--ccc
Confidence 444431 1133444444444444454444444444443321 223333444444444555555555555554443 333
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
|+.....++.++...|+.+.|..+..++
T Consensus 247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 247 DPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp -HHHHHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 4445555555555555555555444443
No 45
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.66 E-value=1.2e-11 Score=115.93 Aligned_cols=271 Identities=11% Similarity=0.030 Sum_probs=212.6
Q ss_pred CCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCC
Q 006071 334 PTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLD 413 (662)
Q Consensus 334 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 413 (662)
..+........+-+...+++.+..++++..++.. ++....+..-+.++...|+..+-..+=.++.+..|..
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d---------pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~ 311 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKD---------PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSK 311 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC---------CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCC
Confidence 4455666666777888899999999999887654 3455566666778888888888888888888888999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 006071 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMES 493 (662)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (662)
+.+|-++...|...|+.++|++.|.+....+.. =...|..+.+.|.-.|..++|+..+..+-+. ++-....+.-+.--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHH
Confidence 999999999999999999999999988764322 2367889999999999999999988887753 22222223344456
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-----C----CCCCCHHHHHHHHhcc
Q 006071 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-----S----GSVPNFDSLLSVLSEK 564 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~p~~~~~~~~~~~~ 564 (662)
|.+.+..+-|.++|.++....+. ++..++-+.-.....+.+.+|..+|+..+. . ...|.+..++.++.+.
T Consensus 390 y~~t~n~kLAe~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHhccHHHHHHHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 78889999999999999877554 666677777777788899999998887762 0 1344466788899999
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
+++++|+..+++++... +.+...|.+++-+|...|+++.|++.|.+.+....
T Consensus 469 ~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p 520 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKP 520 (611)
T ss_pred hhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCC
Confidence 99999999999999875 44667777899999999999999999999887643
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=6.4e-11 Score=108.37 Aligned_cols=360 Identities=11% Similarity=0.031 Sum_probs=243.4
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH--H
Q 006071 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY--T 270 (662)
Q Consensus 193 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~ 270 (662)
..|...+-.....+.+.|....|+..|...... -+..|.+.+....-..+.+.+.. ... |.+.|...+ -
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~----l~~-~l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSI----LVV-GLPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHH----HHh-cCcccchHHHHH
Confidence 335444444455566778888888888777654 23444444443333333333222 221 112221111 1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHH
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI--PTEAGHYGILIENFC 348 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~ 348 (662)
.+..++......+++.+-.......|++. +...-+..+.+.....|+++|+.+|+++.+... -.|..+|+.++- .
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~-~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v 308 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPN-SMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--V 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCc-cHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--H
Confidence 23345555667777877777777776544 677777777777788888888888888887631 124566666553 3
Q ss_pred cCCcHH---HHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 006071 349 KAEMYD---RAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS 425 (662)
Q Consensus 349 ~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 425 (662)
+..+.. -|..++.- . +--+.|+..+.+-|+-.++.++|...|++..+.+|....+|+.++.-|.
T Consensus 309 ~~~~skLs~LA~~v~~i-----------d--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyv 375 (559)
T KOG1155|consen 309 KNDKSKLSYLAQNVSNI-----------D--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYV 375 (559)
T ss_pred HhhhHHHHHHHHHHHHh-----------c--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHH
Confidence 322211 12222211 1 1233467777888888888999999999999988888888999999999
Q ss_pred hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHH
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASR 505 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 505 (662)
...+...|.+.++.+.+.++ .|-..|-.|..+|.-.+.+.-|+-.|++..+. .+-|...|..+...|.+.++.++|++
T Consensus 376 EmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiK 453 (559)
T KOG1155|consen 376 EMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIK 453 (559)
T ss_pred HhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHH
Confidence 99999999999998888653 37888889999999889999999999988863 23467788888889999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh----CC-CCCCHH----HHHHHHhccCCHHHHHHHHHH
Q 006071 506 VMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ----SG-SVPNFD----SLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~p~~~----~~~~~~~~~g~~~~A~~~~~~ 576 (662)
.|+.+...|-. +...+..++..|-+.++..+|.+.+++.++ .| ..|... .+..-+.+.+++++|..+...
T Consensus 454 Cykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~ 532 (559)
T KOG1155|consen 454 CYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATL 532 (559)
T ss_pred HHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHH
Confidence 99988887655 566777788889999999999888887665 12 333221 133334468888998888876
Q ss_pred HhcC
Q 006071 577 CLGR 580 (662)
Q Consensus 577 ~~~~ 580 (662)
+..-
T Consensus 533 ~~~~ 536 (559)
T KOG1155|consen 533 VLKG 536 (559)
T ss_pred HhcC
Confidence 6664
No 47
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.65 E-value=1.5e-12 Score=127.36 Aligned_cols=285 Identities=11% Similarity=0.107 Sum_probs=212.7
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHH--HHHHHHHHcCChhH
Q 006071 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVL-IESYGKKGIVQESVKIFDIMKQLGVERSVKSYD--ALFKLILRRGRYMM 144 (662)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~--~l~~~~~~~g~~~~ 144 (662)
..|+++.|.+.+....+... ++..+..+ ..+..+.|+++.|...+.++.+. .|+..... .....+...|+++.
T Consensus 96 ~eGd~~~A~k~l~~~~~~~~--~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 96 AEGDYQQVEKLMTRNADHAE--QPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred hCCCHHHHHHHHHHHHhccc--chHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHH
Confidence 46899999888887665422 23333333 44447889999999999888774 35443222 33567788899999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHhhcCChHHHHH
Q 006071 145 AKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-------VTYNTMINGYNRFKKMDEAEK 217 (662)
Q Consensus 145 A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~ 217 (662)
|...++++.+.+ +-++..+..+...|...|++++|..++..+.+.+..++. ..|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999988764 336677788888888889999999999998887654222 233444554555566677777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 006071 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (662)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 297 (662)
+++.+... .+.+......+...+...|+.++|.+++++..+. +|+.... ++.+....++.+++.+.++...+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-- 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-- 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh--
Confidence 77776543 3457778888899999999999999999888774 5555322 233444568999999999988876
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHh
Q 006071 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEK 366 (662)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 366 (662)
.|+|+.....+...+.+.+++++|.+.|+...+. .|+...+..+...+.+.|+.++|..++++.+..
T Consensus 324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6778888999999999999999999999999875 688888888999999999999999999887653
No 48
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.65 E-value=1.3e-12 Score=128.58 Aligned_cols=294 Identities=11% Similarity=0.051 Sum_probs=191.2
Q ss_pred HhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHH
Q 006071 67 GRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAK 146 (662)
Q Consensus 67 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~ 146 (662)
...|+++.|.+.+.+..+.... +...+-....+..+.|+++.|.+.+.+..+....+...........+...|+++.|.
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 4667888888888777665322 223334445666777888888888887765431222223333466777788888888
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHH---hhcCChHHHHHHHHHH
Q 006071 147 RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYN-TMINGY---NRFKKMDEAEKLFAEM 222 (662)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~ 222 (662)
..++.+.+.. +-+...+..+...+...|+++++...+..+.+.+.. +...+. .-..++ ...+..+...+.+..+
T Consensus 174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 8888887764 235566777777778888888888888888877544 322221 111111 2222223233344443
Q ss_pred HHCC---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHcC
Q 006071 223 KEKN---IEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVT---YTALLPGLCDAGKMVEVQKVLREMVERY 296 (662)
Q Consensus 223 ~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 296 (662)
.... .+.+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+.
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~- 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN- 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh-
Confidence 3321 1136777778888888888888888888888765 344332 111222223457778888888887775
Q ss_pred CCCCcH--HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhh
Q 006071 297 IPPKDN--SVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 297 ~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
.|.|+ .....+...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++.+..-
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~ 400 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGLM 400 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 67677 77788888899999999999999854333346788778888999999999999999998876543
No 49
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=3.8e-12 Score=124.56 Aligned_cols=287 Identities=9% Similarity=0.044 Sum_probs=223.0
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHh-HHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhH
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRET-HLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQE 109 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 109 (662)
...|+++.|.+......+.. +++.. +.....+..+.|+++.|.+.++++.+................+...|+++.
T Consensus 95 ~~eGd~~~A~k~l~~~~~~~---~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 95 LAEGDYQQVEKLMTRNADHA---EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HhCCCHHHHHHHHHHHHhcc---cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 34699999998888876643 23444 444456668999999999999999875433222222244678889999999
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCH-------HHHHHHHHHHHhcCCHHHHHH
Q 006071 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTR-------HTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 110 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~ 182 (662)
|...++.+.+.. |.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999876 567888999999999999999999999999887554222 123333444444556677777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006071 183 FFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDV 262 (662)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 262 (662)
+++.+.+. .+.+......+...+...|+.++|.+++++..+. +|+... .++.+.+..++.+++++..+...+..
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~- 324 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH- 324 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-
Confidence 77777654 3457888899999999999999999999998874 455422 23444456699999999999988763
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006071 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 263 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
+-|...+..+...+...+++++|.+.|+.+.+. .| +...+..+...+.+.|+.++|..++++...
T Consensus 325 P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P-~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 325 GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RP-DAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456667889999999999999999999999985 57 777888999999999999999999998755
No 50
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=1.6e-10 Score=105.76 Aligned_cols=383 Identities=9% Similarity=-0.007 Sum_probs=229.3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CcHHHHHH
Q 006071 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPP-KDNSVFMK 307 (662)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~ 307 (662)
.|...+....-.+.+.|....|...|...... .+..-..|..+...+ .+.+.+ ...... ... .....-.-
T Consensus 162 ~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~li---t~~e~~----~~l~~~-l~~~~h~M~~~F 232 (559)
T KOG1155|consen 162 KDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSELI---TDIEIL----SILVVG-LPSDMHWMKKFF 232 (559)
T ss_pred chhHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHhh---chHHHH----HHHHhc-CcccchHHHHHH
Confidence 34444444455556677777777777776643 133333444443322 222222 222211 111 01111222
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHH
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI 387 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 387 (662)
+..++......+++..-.......|++.+...-+....+.-...+++.|+.+|+++...+ | -.-.|..+|+.++
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD----P--YRl~dmdlySN~L 306 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND----P--YRLDDMDLYSNVL 306 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC----C--CcchhHHHHhHHH
Confidence 334455555667777777777777766666666666666667777888888888775432 1 0112344555544
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHH
Q 006071 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPAD 467 (662)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (662)
-. +..+ .+..-+-+.....+...+.|...+...|+-.++.++|...|+...+.+.. ....|+.+.+-|....+...
T Consensus 307 Yv--~~~~-skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~A 382 (559)
T KOG1155|consen 307 YV--KNDK-SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHA 382 (559)
T ss_pred HH--Hhhh-HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHH
Confidence 32 2211 11112222233334556677777777777777888888888887776533 55677777777888888888
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 468 AKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
|++.++.+++-. +-|...|..+..+|...+.+.-|+-+|+++....+. |...|.+|+.+|.+.++.++|++-|++...
T Consensus 383 Ai~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~ 460 (559)
T KOG1155|consen 383 AIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAIL 460 (559)
T ss_pred HHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 888888777633 346677778888888888888888888877776554 677778888888888888888888877776
Q ss_pred CCCCCC--HHHHHHHHhccCCHHHHHHHHHHHhcCC-----CCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 548 SGSVPN--FDSLLSVLSEKGKTIAAVKLLDFCLGRD-----CII-DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 548 ~~~~p~--~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
.+.... ...++.++.+.++.++|.+++++.++.. ..+ .......|+.-+.+.+++++|-.+..+...- .+
T Consensus 461 ~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~ 538 (559)
T KOG1155|consen 461 LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ET 538 (559)
T ss_pred ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--Cc
Confidence 444422 3456677777778888888777766521 111 1222223666667778888887766665544 33
Q ss_pred cHhhHHHHHHHHHhc
Q 006071 620 DWKSSDKLIAGLNQE 634 (662)
Q Consensus 620 ~~~~~~~l~~~~~~~ 634 (662)
.-.....|++.+++.
T Consensus 539 e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 539 ECEEAKALLREIRKI 553 (559)
T ss_pred hHHHHHHHHHHHHHh
Confidence 444445566666554
No 51
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.64 E-value=3.7e-11 Score=105.90 Aligned_cols=453 Identities=11% Similarity=0.081 Sum_probs=289.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCH-HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDR-ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG 105 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 105 (662)
+.-+...+++..|+.+++.....+ .... .+-.=+..++...|++++|...+..+...+ .++...+..+...+.-.|
T Consensus 29 Ledfls~rDytGAislLefk~~~~--~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg 105 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLD--REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLG 105 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccc--hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHH
Confidence 445667889999999998876544 2222 222335566789999999999999887743 457778888888888889
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
.+.+|..+-.... .++-.-..++..-.+.++-++-..+.+.+... ...--++.......-.+.+|++++.
T Consensus 106 ~Y~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 106 QYIEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 9999998877664 34444555566666778777766666665321 1222234444444567889999999
Q ss_pred HHHhCCCCCCHHHHHHH-HHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006071 186 DMKSRGISLDVVTYNTM-INGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKP 264 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 264 (662)
.+... .|+-...|.. .-+|.+..-++-+.++++-..+. ++.++.+.|..+....+.=+-..|..-.+++...+-..
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~ 252 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE 252 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc
Confidence 98876 3444444443 44677888888888888887765 44455666665555544433334444444444432111
Q ss_pred CHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 006071 265 NAVTYTALLPGLCD-----AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGH 339 (662)
Q Consensus 265 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 339 (662)
|-. +.-+++ ..+-+.|.+++--+.+. -+.+...++-.|.+.++..+|..+.+++. |.++.-
T Consensus 253 ----~~f-~~~l~rHNLVvFrngEgALqVLP~L~~~-----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~E 318 (557)
T KOG3785|consen 253 ----YPF-IEYLCRHNLVVFRNGEGALQVLPSLMKH-----IPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYE 318 (557)
T ss_pred ----chh-HHHHHHcCeEEEeCCccHHHhchHHHhh-----ChHhhhhheeeecccccHHHHHHHHhhcC----CCChHH
Confidence 111 111122 23446788887776663 23455566777889999999999888764 333333
Q ss_pred HHHHHHHHHcCCc-------HHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006071 340 YGILIENFCKAEM-------YDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV 411 (662)
Q Consensus 340 ~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (662)
|-.-.-.+...|+ ..-|.+.|.-. ..+...-|. ..-.++..++.-..++++.+..+..+..-..
T Consensus 319 yilKgvv~aalGQe~gSreHlKiAqqffqlV--------G~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~ 390 (557)
T KOG3785|consen 319 YILKGVVFAALGQETGSREHLKIAQQFFQLV--------GESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFT 390 (557)
T ss_pred HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh--------cccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3222222333332 44455555444 333333332 2344566666667788999988888887775
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhH-HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHH-H
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAY-ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFR-S 489 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~ 489 (662)
.|...-..+.++++..|++.+|.++|-.+....++ |..+| ..+.++|.+++.++.|..++-++ +-+.+..++. .
T Consensus 391 NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLql 466 (557)
T KOG3785|consen 391 NDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQL 466 (557)
T ss_pred CcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHH
Confidence 55555556889999999999999999888765555 55555 55678899999999987766554 3333333333 3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006071 490 VMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (662)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (662)
+...|.+.+.+--|.+.|+.+... +|+++.|.
T Consensus 467 IAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnWe 498 (557)
T KOG3785|consen 467 IANDCYKANEFYYAAKAFDELEIL--DPTPENWE 498 (557)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHcc--CCCccccC
Confidence 345688889888888888887655 44556664
No 52
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.64 E-value=2e-12 Score=127.21 Aligned_cols=294 Identities=9% Similarity=0.004 Sum_probs=221.0
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
+....|+++.|.+.+....+.. +.+...+....++....|+++.|.+.+.+..+..+.+...+.......+...|+++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 4447899999999999987765 34455566677889999999999999999876543333345555688888999999
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHH-HHHHHH---HhcCCHHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYN-VMLWGF---FLSLKLETAIRFF 184 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~ll~~~---~~~~~~~~a~~~~ 184 (662)
.|...++.+.+.. |.++..+..+...+.+.|++++|.+.+..+.+.++. +...+. ....++ ...+..+.....+
T Consensus 171 ~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999875 557788999999999999999999999999988654 333332 222222 3333444445567
Q ss_pred HHHHhCCCC---CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhh---HHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 185 EDMKSRGIS---LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVIS---YTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 185 ~~~~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
..+...... .+...+..+...+...|+.++|.+++++..+.. |+... ...........++.+.+.+.++...
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 766665321 378889999999999999999999999999863 44332 1222223344578888999998887
Q ss_pred hCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006071 259 SFDVKPNA--VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 259 ~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
+.. +-|+ ....++...+.+.|++++|.+.|+........| +...+..+...+.+.|+.++|.+++++...
T Consensus 327 k~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p-~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 327 KNV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL-DANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HhC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 652 3344 556688899999999999999999544433467 667788999999999999999999998654
No 53
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.63 E-value=3.2e-11 Score=113.25 Aligned_cols=277 Identities=13% Similarity=0.042 Sum_probs=184.8
Q ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 006071 263 KPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGI 342 (662)
Q Consensus 263 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 342 (662)
.-+......-..-+...+++.+..++.+.+.+. .|.....+..-+.++...|+...-..+-..+.+. .|..+.+|-.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~--dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~a 317 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEK--DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFA 317 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhh--CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhh
Confidence 344455555556666777777777777777764 4445555555566777777766666666666654 3556667777
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
+.--|...|...+|.+.|.+....+ + . -...|-...+.|+-.+..+.|...+..+.+.-+.....+--+..
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD----~--~---fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgm 388 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLD----P--T---FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGM 388 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcC----c--c---ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 7777777777777777777764322 1 1 12357777777777777777777777776655433333444455
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----C-CCC-cHHhHHHHHHHHHh
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED----G-HSP-ASSLFRSVMESLFE 496 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~ 496 (662)
-|.+.++.+.|.++|.+..... |.|+...+-+.-.....+.+.+|..+|+..... + -.+ -..+++.+..+|.+
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 5667777777877777776652 336666666666666677777777777776521 0 011 23457777778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 497 DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
.+.+++|+..++..+...++ +..++..++..|...|+++.|++.|.+.+. +.|+..
T Consensus 468 l~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~ 523 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNI 523 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccH
Confidence 88888888888888877555 777788888888888888888888887775 667643
No 54
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=3.7e-13 Score=128.72 Aligned_cols=284 Identities=15% Similarity=0.147 Sum_probs=226.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCC--CCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 35 NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGV--QWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 35 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
+..+|+..|+...... ..+..+...+.++|...+++++|..+|+.+.+..+ -.+..+|...+..+-+. -++.
T Consensus 334 ~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 7789999999966554 56668889999999999999999999999887653 23678888888765432 1222
Q ss_pred HH-HHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 113 IF-DIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 113 ~~-~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
.+ +.+.+.. +..+.+|.++.++|.-+++++.|++.|++.++. .| ...+|+.+..-+.....+|.|...|+..+..
T Consensus 408 ~Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~ 484 (638)
T KOG1126|consen 408 YLAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV 484 (638)
T ss_pred HHHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC
Confidence 22 2333322 467889999999999999999999999999875 34 6778888888888889999999999998875
Q ss_pred CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH
Q 006071 191 GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYT 270 (662)
Q Consensus 191 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 270 (662)
... +-..|-.+...|.+.++++.|+-.|+...+-+ +.+.+....+...+-+.|+.++|+.+++++.... +-|+..--
T Consensus 485 ~~r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~ 561 (638)
T KOG1126|consen 485 DPR-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKY 561 (638)
T ss_pred Cch-hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHH
Confidence 221 33445556778999999999999999998865 4466777788888899999999999999998764 44566655
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS 332 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 332 (662)
.....+...+++++|...++++.+. .|.+..++..+...|.+.|..+.|+.-|.-+.+..
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6667778889999999999999884 78788999999999999999999999998887764
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.62 E-value=2.2e-11 Score=120.09 Aligned_cols=548 Identities=15% Similarity=0.109 Sum_probs=306.2
Q ss_pred HHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006071 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGV 122 (662)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~ 122 (662)
+..+...| ..|+..+|..++.-|+..|+.+.|- +|.-|.-++.+.+...|+.++.+....++.+.+.
T Consensus 13 la~~e~~g-i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 13 LALHEISG-ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHhc-CCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 33444445 6788899999999999999998888 8888887777778888999998888888887776
Q ss_pred CcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCHHHHHH
Q 006071 123 ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK-SRGISLDVVTYNT 201 (662)
Q Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~ 201 (662)
.|...+|..|..+|.+.||... |+...+ ....+...+...|.-.....++..+. ..+.-||..+
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n--- 144 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN--- 144 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---
Confidence 4788889999999999988665 222221 11222333444444444444443322 1223344432
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER-ADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAG 280 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 280 (662)
.+......|-++.+.+++..+...... . ++..+++-+..... +++-....+...+ .|++.+|..++.+....|
T Consensus 145 ~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag 218 (1088)
T KOG4318|consen 145 AILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAG 218 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcC
Confidence 233344456677777777665432100 1 11112333333322 3333333333332 588999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 006071 281 KMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360 (662)
Q Consensus 281 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 360 (662)
+.+.|..++.+|.+.|++. +...|..++-+ .++...+..++.-|...|+.|+..|+...+..+..+|+...+
T Consensus 219 ~~d~Ak~ll~emke~gfpi-r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~---- 290 (1088)
T KOG4318|consen 219 DVDGAKNLLYEMKEKGFPI-RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG---- 290 (1088)
T ss_pred chhhHHHHHHHHHHcCCCc-ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc----
Confidence 9999999999999998876 55555555443 788888888889999999999999998887777775552211
Q ss_pred HHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHH------------HHHHhcC-CCCHHHHHHHHHHHHhc
Q 006071 361 DKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFF------------RQLMKKG-VLDPVAFNNLIRGHSKE 427 (662)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~------------~~~~~~~-~~~~~~~~~l~~~~~~~ 427 (662)
+.+ .+....+++-+.+-+-.| ..|...+ .+..-.+ ...+.+| ++..-...+
T Consensus 291 ------------~e~-sq~~hg~tAavrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiw-s~c~~l~hQ 354 (1088)
T KOG4318|consen 291 ------------EEG-SQLAHGFTAAVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIW-SMCEKLRHQ 354 (1088)
T ss_pred ------------ccc-cchhhhhhHHHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHH-HHHHHHHHc
Confidence 111 122223333333222233 2222222 2222222 1112223 233333346
Q ss_pred CChhHHHHHHHHHhhC--CCC-CCHHhHHHHHHHHHhcCChHHHHHHH--HHHHHcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006071 428 GNPDSAFEIVKIMGRR--GVP-RDADAYICLIESYLRKGEPADAKTAL--DSMIEDGHSPASSLFRSVMESLFEDGRVQT 502 (662)
Q Consensus 428 ~~~~~a~~~~~~~~~~--~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 502 (662)
|.-+...++...+..- ... -++..|..++.-|.+.-+..-...++ .+.++.. .+....-.+.....+. +...
T Consensus 355 gk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns 431 (1088)
T KOG4318|consen 355 GKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNS 431 (1088)
T ss_pred CCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-Ccch
Confidence 7777777777776542 111 13445555555554432111111111 1111110 0000000111111100 1111
Q ss_pred HHHHHHHHH----HcCCCC-------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHH
Q 006071 503 ASRVMKSMV----EKGVKE-------NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAV 571 (662)
Q Consensus 503 a~~~~~~~~----~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~ 571 (662)
+.+-+.... .+...| -...-+.++..+++.-+..+++..-++....-+.--+..++..+....+.+.|.
T Consensus 432 ~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al 511 (1088)
T KOG4318|consen 432 FLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYAL 511 (1088)
T ss_pred HHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHH
Confidence 111111111 111111 122234455566666666666655444433212222456777778888888888
Q ss_pred HHHHHHhcCC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc--HhhHHHHHHHHHhcCCcchhHHHHHHh
Q 006071 572 KLLDFCLGRD--CIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD--WKSSDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 572 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
...++....+ ...+...+..+.+.+.+.+...++.++++.+.+.....+ ..+..+++......|+.+.-.++.+.+
T Consensus 512 ~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~l 591 (1088)
T KOG4318|consen 512 SFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADIL 591 (1088)
T ss_pred hchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHH
Confidence 8888655442 223455677889999999999999999999887433322 445566777778888887777777766
Q ss_pred hhhc
Q 006071 648 RGEM 651 (662)
Q Consensus 648 ~~~~ 651 (662)
...+
T Consensus 592 vslg 595 (1088)
T KOG4318|consen 592 VSLG 595 (1088)
T ss_pred HHhh
Confidence 5443
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.61 E-value=3.4e-13 Score=128.98 Aligned_cols=286 Identities=13% Similarity=0.057 Sum_probs=218.0
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCCh
Q 006071 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396 (662)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (662)
...+|...|..+... +.-+..+...+..+|...+++++|.++|+.+.+.. .-..-+...|.+.+..+-+ .
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~------p~rv~~meiyST~LWHLq~---~ 403 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIE------PYRVKGMEIYSTTLWHLQD---E 403 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------cccccchhHHHHHHHHHHh---h
Confidence 456788888885554 34445677778888999999999999998886543 1222356677777765432 2
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
-+---+-+.+....+..|.+|.++..+|+-+++.+.|++.|++..+.+.. ...+|+.+..=+.....+|.|...|+..+
T Consensus 404 v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al 482 (638)
T KOG1126|consen 404 VALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKAL 482 (638)
T ss_pred HHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhh
Confidence 22223445566666889999999999999999999999999999886422 67889999998999999999999999987
Q ss_pred HcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-
Q 006071 477 EDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF- 554 (662)
Q Consensus 477 ~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~- 554 (662)
. +.|. ...|..+.-.|.+.++++.|.-.|+++++.++. +......+...+.+.|+.++|++++++......+...
T Consensus 483 ~--~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~ 559 (638)
T KOG1126|consen 483 G--VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLC 559 (638)
T ss_pred c--CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchh
Confidence 4 3343 456777788899999999999999999988777 6777788888999999999999999998873322222
Q ss_pred -HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 555 -DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 555 -~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
..-+..+...+++++|++.+++.-+..|+ +..++..++..|-+.|+.+.|+.-|-=+.+..+
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 23566777889999999999977766543 345566899999999999999998888776544
No 57
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=5.3e-12 Score=109.83 Aligned_cols=291 Identities=18% Similarity=0.215 Sum_probs=201.2
Q ss_pred CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCC
Q 006071 316 GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQ 395 (662)
Q Consensus 316 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 395 (662)
.+.++|.+.|-+|.+.. +.+..+..+|...|.+.|..+.|+.+...+.++ |+....--....-.+..-|...|-
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-----pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-----PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-----CCCchHHHHHHHHHHHHHHHHhhh
Confidence 44555666666655532 333444455566666666666666666655432 111111111123345556777888
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH----HhHHHHHHHHHhcCChHHHHHH
Q 006071 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA----DAYICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~ 471 (662)
++.|+.+|..+.+.+..-..+...|+..|-...+|++|+++-+++.+.+..+.. ..|--+...+....+.+.|..+
T Consensus 123 ~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 123 LDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 889999998888877777788888999999999999999999988886544432 3455666677777889999999
Q ss_pred HHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCC
Q 006071 472 LDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSV 551 (662)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 551 (662)
+++..+.+. .....-..+.+.....|+++.|++.++.+.+.++.--..+...+..+|.+.|++++.+..+.++.+....
T Consensus 203 l~kAlqa~~-~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 203 LKKALQADK-KCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHhhCc-cceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 999987542 2233444566778889999999999999999988777788889999999999999999999999886666
Q ss_pred CCHHHHHHHH-hccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHc
Q 006071 552 PNFDSLLSVL-SEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA---AGKTLNAYSILFKIMEK 615 (662)
Q Consensus 552 p~~~~~~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~ 615 (662)
++...++.-+ ....-.+.|..++.+-+.. .|+...++.+++.-.. .|+..+-+..+++|+..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 6654433333 3344556677777767766 4555555556665553 46677778888887754
No 58
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.60 E-value=5.4e-09 Score=100.24 Aligned_cols=441 Identities=14% Similarity=0.133 Sum_probs=295.6
Q ss_pred HHHhhcCCCCChHHHHH-HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC
Q 006071 12 NKIRALVPQFDHNLVYN-VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD 90 (662)
Q Consensus 12 ~~~~~~~~~~~~~~l~~-~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 90 (662)
+-+...+.+.....+.. .|...|+-++|.+..+..++.+ +.+...|..+.-.+....++++|+.+|....+.+.. |
T Consensus 32 ~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N 108 (700)
T KOG1156|consen 32 QILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-N 108 (700)
T ss_pred HHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-c
Confidence 33444555555544444 6678899999999999999987 789999999999999999999999999999988765 8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCcCHHHHHHHHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG-IEPTRHTYNVMLW 169 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~ll~ 169 (662)
..++.-+.-.-++.|+++........+.+.. +.....|..+..+..-.|++..|..+.+...+.- ..|+...|.....
T Consensus 109 ~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~ 187 (700)
T KOG1156|consen 109 LQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSEL 187 (700)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHH
Confidence 8899888877788899999888888877753 3455678888888889999999999999987653 2466665544332
Q ss_pred ------HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-
Q 006071 170 ------GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV- 242 (662)
Q Consensus 170 ------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~- 242 (662)
...+.|.++.|.+.+...... +......-..-...+.+.+++++|..++..+... .||...|...+..+.
T Consensus 188 ~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lg 264 (700)
T KOG1156|consen 188 LLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALG 264 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHH
Confidence 344678888888887665543 2212233345567788999999999999999987 367766665554444
Q ss_pred hcCCHHHHH-HHHHHHhhCCCCCCHHHHHH-HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHH
Q 006071 243 AVERADDAL-RIFDEMKSFDVKPNAVTYTA-LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNA 320 (662)
Q Consensus 243 ~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (662)
+..+.-+++ .+|....+. .|....-.. -+.......-.+..-.++....+.|+++ ++..+...|-.....+-
T Consensus 265 k~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~----vf~dl~SLyk~p~k~~~ 338 (700)
T KOG1156|consen 265 KIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS----VFKDLRSLYKDPEKVAF 338 (700)
T ss_pred HHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc----hhhhhHHHHhchhHhHH
Confidence 344444444 566665442 222111111 1111112223344556666677776544 44444444432221111
Q ss_pred HHHHH----HHHHhCC----------CCCChhhH--HHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc-cccH
Q 006071 321 AADVL----KAMIRLS----------IPTEAGHY--GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME-ASSY 383 (662)
Q Consensus 321 a~~~~----~~~~~~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 383 (662)
..++. ..+...| -+|....| -.++..|-..|+++.|...++..++.. |+ ...|
T Consensus 339 le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHT----------PTliEly 408 (700)
T KOG1156|consen 339 LEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHT----------PTLIELY 408 (700)
T ss_pred HHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccC----------chHHHHH
Confidence 11111 1111111 14454444 446778889999999999999985432 22 2234
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH--------hHHH-
Q 006071 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD--------AYIC- 454 (662)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~- 454 (662)
..-...+...|..+.|..+++...+.+.+|...-..-+....+.++.++|.++.....+.|. +.. .|-.
T Consensus 409 ~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~ 486 (700)
T KOG1156|consen 409 LVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQL 486 (700)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhH
Confidence 44447788999999999999999999887777666777788889999999999998887664 221 1211
Q ss_pred -HHHHHHhcCChHHHHHHHHHHHH
Q 006071 455 -LIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 455 -l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
-..+|.+.|++..|++-|..+.+
T Consensus 487 E~g~ay~r~~k~g~ALKkfh~i~k 510 (700)
T KOG1156|consen 487 EDGEAYLRQNKLGLALKKFHEIEK 510 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHhhHHH
Confidence 24567788888888776665543
No 59
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.60 E-value=7.6e-12 Score=108.90 Aligned_cols=294 Identities=16% Similarity=0.164 Sum_probs=193.3
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCc--HHHHHHHHHHHHhcCChHHH
Q 006071 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKD--NSVFMKLLGVQCKSGHLNAA 321 (662)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a 321 (662)
.++.++|.+.|-+|.+.. +.+..+-.++.+.+.+.|..+.|+.+.+.+..+.--+.+ ..+...|..-|...|-++.|
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 345566666666666532 223334445556666667777777766666664211111 12345566667777777777
Q ss_pred HHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHH
Q 006071 322 ADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEI 401 (662)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 401 (662)
..+|..+.+.+ ..-......|+..|....+|++|+++-+++...+ ++....--...|.-+...+....+.+.|..
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~----~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLG----GQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC----CccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 77777776643 2334456667777888888888888877775443 111100111234455555666788889999
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCC
Q 006071 402 FFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHS 481 (662)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 481 (662)
++.+..+.++....+-..+.+.+...|+++.|.+.++...+.+...-..+...|..+|.+.|++++...++..+.+....
T Consensus 202 ~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 202 LLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 99999998888888888888999999999999999999988876656678888999999999999999999998875433
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---CCCHHHHHHHHHHHHh
Q 006071 482 PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM---RGHVEEALGRIDLMMQ 547 (662)
Q Consensus 482 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~ 547 (662)
++ ....+........-.+.|..++.+-+.+ +|+...+..++..-.. .|...+-+.+++.|+.
T Consensus 282 ~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 AD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred cc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 33 3333434333444456666666665554 5677777777775543 3456666777777765
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.56 E-value=5.6e-11 Score=117.29 Aligned_cols=240 Identities=13% Similarity=0.160 Sum_probs=163.6
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 99 (662)
.+++..++.-+...|+.+.|- +|..|.-++ .|.+...++.++......++.+.+. .|.+.+|+.+..
T Consensus 25 RvtyqsLiarYc~~gdieaat-if~fm~~ks-Lpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt~Ll~ 91 (1088)
T KOG4318|consen 25 RVTYQSLIARYCTKGDIEAAT-IFPFMEIKS-LPVREGVFRGLVASHKEANDAENPK-----------EPLADTYTNLLK 91 (1088)
T ss_pred hhhHHHHHHHHcccCCCcccc-chhhhhccc-ccccchhHHHHHhcccccccccCCC-----------CCchhHHHHHHH
Confidence 356788888899999999988 999997776 6788889999998888888877665 468889999999
Q ss_pred HHHhcCChhH---HHHHHHHHH----HcCCCcCHHhH--------------HHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 006071 100 SYGKKGIVQE---SVKIFDIMK----QLGVERSVKSY--------------DALFKLILRRGRYMMAKRYFNKMLSEGIE 158 (662)
Q Consensus 100 ~~~~~g~~~~---A~~~~~~~~----~~g~~~~~~~~--------------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 158 (662)
+|...||... ..+.+.... ..|+.....-+ ...+....-.|-++.+++++..+......
T Consensus 92 ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa~~ 171 (1088)
T KOG4318|consen 92 AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSAWN 171 (1088)
T ss_pred HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccccc
Confidence 9999999754 333222221 12221111111 11222233345555555555544322111
Q ss_pred cCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006071 159 PTRHTYNVMLWGFFLSL-KLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (662)
Q Consensus 159 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (662)
.+..+ +++-+.... .+++-..+...... .|+..+|..++++....|+.+.|..++.+|.+.|++.+..-|-.|
T Consensus 172 -~p~~v--fLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 172 -APFQV--FLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred -chHHH--HHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 11111 244333222 23333333333332 589999999999999999999999999999999998887766666
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 006071 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (662)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 281 (662)
+-+ .++...+..+++.|...|+.|+..|+...+-.+...|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 655 78888889999999999999999999888877777554
No 61
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=4.6e-11 Score=107.58 Aligned_cols=290 Identities=14% Similarity=0.101 Sum_probs=165.3
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 175 LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIF 254 (662)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 254 (662)
|++..|++...+..+.+.. ....|..-.++.-..|+.+.+-..+.+..+..-.++...+-+........|+++.|..-+
T Consensus 98 G~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred CcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 4555555555444444322 223333334444444555555555555444321233334444444444555555555544
Q ss_pred HHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcH-------HHHHHHHHHHHhcCChHHHHHHHHH
Q 006071 255 DEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN-------SVFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 255 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
.++...+ +-++.......++|.+.|++.....++..+.+.+.-. ++ .++..+++-....+..+.-...++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~-~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS-DEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC-hHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 4444432 2334444444555555555555555555555544332 21 2334444444444444444444444
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006071 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (662)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (662)
..+. ...++..-..++.-+..+|+.++|.++.++.+++.. .|+ -...-.+.+.++...-++..+...
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~--------D~~----L~~~~~~l~~~d~~~l~k~~e~~l 321 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQW--------DPR----LCRLIPRLRPGDPEPLIKAAEKWL 321 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhcc--------Chh----HHHHHhhcCCCCchHHHHHHHHHH
Confidence 4332 234455566667777777777777777777755431 122 112223445677777777777777
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP 482 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 482 (662)
+..+.++..+.+|...|.+.+.+.+|...|+...+. .|+..+|+.+..++.+.|++.+|.++.++....-.+|
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 777778888888888888888888888888877764 5788888888888888888888888888776443333
No 62
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.56 E-value=2e-11 Score=109.90 Aligned_cols=292 Identities=14% Similarity=0.177 Sum_probs=157.9
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHH
Q 006071 245 ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADV 324 (662)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 324 (662)
|++..|.+...+-.+.+- -....|..-..+.-+.|+.+.+-.++.++.+...++ +..............|+++.|..-
T Consensus 98 G~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-TLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred CcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhCCCchhHHHH
Confidence 444444444444443331 122233333444444455555555544444431122 233333444444445555555555
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHH
Q 006071 325 LKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFR 404 (662)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 404 (662)
.+++...+ +..+.......++|.+.|++.....++..+.+.+....+ .-......+|..+++-....+..+.-...++
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~-e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDE-EAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChH-HHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 54444443 333444444555555555555555555554332211000 0000011245555555555555555555666
Q ss_pred HHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH
Q 006071 405 QLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS 484 (662)
Q Consensus 405 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 484 (662)
.....-..++..-.+++.-+...|+.++|.++..+..+++..|+ -...-.+.+-++++.-++..+.-.+. .+.++
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 65555566677777777777788888888888777777665555 11222344556666666666665542 22334
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..+.++...|.+.+.|.+|...|+..++. .|+...|+.+..++.+.|++.+|.+..++.+.
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66777777777888888888888766543 55677777777888888888777777776554
No 63
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.53 E-value=6.4e-10 Score=111.36 Aligned_cols=566 Identities=12% Similarity=-0.000 Sum_probs=314.0
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
..+...|+..|=+.++.+ +.-..+|..+...|...-+...|.+.|+..-..+.. +...+......|+...+++.|..
T Consensus 471 rK~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHH
Confidence 345777777777777766 556678888888888877888888888887776543 66778888888888888888888
Q ss_pred HHHHHHHcC-CCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006071 113 IFDIMKQLG-VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRG 191 (662)
Q Consensus 113 ~~~~~~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 191 (662)
+.-...+.. ...-...|....-.|.+.++...|+.-|+...+.. +.|...|..+..+|..+|++..|.++|.++...+
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 843333211 00111234444455667788888888888887764 3377788888888888888888888888877652
Q ss_pred CCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCC------CCCCHhhHHHHHHHHHhcCCHHHHHHHHHH-------Hh
Q 006071 192 ISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKN------IEPTVISYTTMIKGYVAVERADDALRIFDE-------MK 258 (662)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~ 258 (662)
+. +...---....-+..|.+.++...+..+...- ...-..++-.+...+.-.|-..++..+++. ..
T Consensus 627 P~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PL-SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 21 22221122233456788888888777765320 001112222222233333332333333322 22
Q ss_pred hCCCCCCHHHHHHHHHHHHhCCCHH------HHHHHH-HHHHHcCCCCC-------------------cHHHHHHHHHHH
Q 006071 259 SFDVKPNAVTYTALLPGLCDAGKMV------EVQKVL-REMVERYIPPK-------------------DNSVFMKLLGVQ 312 (662)
Q Consensus 259 ~~~~~~~~~~~~~ll~~~~~~g~~~------~a~~~~-~~~~~~~~~~~-------------------~~~~~~~l~~~~ 312 (662)
......+...|..+-.+|.-.-..+ ....++ .+....+.-|+ +...|..++..|
T Consensus 706 ~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGiny 785 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINY 785 (1238)
T ss_pred HHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHH
Confidence 2211222222322222221000000 000000 00111111111 122333333333
Q ss_pred Hh----c----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHH
Q 006071 313 CK----S----GHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN 384 (662)
Q Consensus 313 ~~----~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (662)
.+ . .+...|+..+...++.. ..+..+|+.|.-. ...|.+.-+...|-+... ..+....+|.
T Consensus 786 lr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~---------sep~~~~~W~ 854 (1238)
T KOG1127|consen 786 LRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF---------SEPTCHCQWL 854 (1238)
T ss_pred HHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh---------ccccchhhee
Confidence 22 1 11234555555555432 3344555554433 444666666665554322 1223445666
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh----hCCCCCCHHhHHHHHHHHH
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG----RRGVPRDADAYICLIESYL 460 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~ 460 (662)
.+.-.+....+++-|...|.......|.+...|..........|+.-++..+|..-. ..|-.++..-|-+......
T Consensus 855 NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~ 934 (1238)
T KOG1127|consen 855 NLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHL 934 (1238)
T ss_pred ccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHH
Confidence 666667777888888888888888878787777777666677777777777776622 2333445555555555556
Q ss_pred hcCChHHHHHHHHHH----------HHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HH
Q 006071 461 RKGEPADAKTALDSM----------IEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVA----KI 525 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~l 525 (662)
.+|+.++-+...+++ .. +.+.+...|........+.+.+..|.....+++.. ..+.+...|+ .+
T Consensus 935 ~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~ 1013 (1238)
T KOG1127|consen 935 QNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDA 1013 (1238)
T ss_pred hccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 666665544333332 22 33444566666666667777777777777665432 1111222233 45
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHH--HHhccCCHHHHHHHHHHHhcCCCCCCh--hhHHHHHHHHHhcCC
Q 006071 526 LEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLS--VLSEKGKTIAAVKLLDFCLGRDCIIDL--ASYEKVLDALLAAGK 601 (662)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~--~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~ 601 (662)
.+.++..|.++.|...+..... ..+-..... .+.-.|+++++...|++++........ .....++......|.
T Consensus 1014 gRL~lslgefe~A~~a~~~~~~---evdEdi~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~ 1090 (1238)
T KOG1127|consen 1014 GRLELSLGEFESAKKASWKEWM---EVDEDIRGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQ 1090 (1238)
T ss_pred hhhhhhhcchhhHhhhhcccch---hHHHHHhhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhccc
Confidence 5566677777766654432211 111111111 223468899999999988876433332 333456677778888
Q ss_pred HHHHHHHHHHHHHcCCC
Q 006071 602 TLNAYSILFKIMEKGGV 618 (662)
Q Consensus 602 ~~~A~~~~~~~~~~~~~ 618 (662)
.+.|...+-+......+
T Consensus 1091 k~~A~~lLfe~~~ls~~ 1107 (1238)
T KOG1127|consen 1091 KNDAQFLLFEVKSLSKV 1107 (1238)
T ss_pred chHHHHHHHHHHHhCcc
Confidence 99998888887776543
No 64
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=2.1e-09 Score=97.10 Aligned_cols=292 Identities=14% Similarity=0.090 Sum_probs=217.2
Q ss_pred HhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHH
Q 006071 277 CDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRA 356 (662)
Q Consensus 277 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 356 (662)
+..++...+...+--+......|.|......+..++...|+.++|...|+.....+ +.+........-.+.+.|+++..
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~ 285 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQD 285 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhH
Confidence 44555555555555555555567789999999999999999999999999887643 22333333344455677888888
Q ss_pred HHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006071 357 IKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEI 436 (662)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 436 (662)
..+...++.... .+...|-.-....-..+++..|+.+-++.++..+.+...+-.-...+...+++++|.-.
T Consensus 286 ~~L~~~Lf~~~~---------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~Ia 356 (564)
T KOG1174|consen 286 SALMDYLFAKVK---------YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIA 356 (564)
T ss_pred HHHHHHHHhhhh---------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHH
Confidence 888777754321 12223433344445678899999999999999988888998888999999999999999
Q ss_pred HHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHH-HHHH-hcCCHHHHHHHHHHHHHcC
Q 006071 437 VKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM-ESLF-EDGRVQTASRVMKSMVEKG 514 (662)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~ 514 (662)
|+...... +.+...|..|+.+|...|++.+|...-....+ -++.+..++..+. ..|. ...--++|.++++..+...
T Consensus 357 FR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~-~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~ 434 (564)
T KOG1174|consen 357 FRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIR-LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKIN 434 (564)
T ss_pred HHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHH-HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccC
Confidence 99988763 34789999999999999999999888877665 2445566665553 3332 2334578999999888765
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHhccCCHHHHHHHHHHHhcCCCC
Q 006071 515 VKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN---FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (662)
Q Consensus 515 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (662)
+. -......+...+...|..++++.++++-+. ..|| ...+++.+...+.+.+|.+.|..++..+|.
T Consensus 435 P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~ 503 (564)
T KOG1174|consen 435 PI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK 503 (564)
T ss_pred Cc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence 54 244567788889999999999999998887 5555 345888889999999999999999988754
No 65
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=4.8e-09 Score=102.67 Aligned_cols=435 Identities=13% Similarity=0.060 Sum_probs=254.4
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHHHH
Q 006071 87 VQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHTYN 165 (662)
Q Consensus 87 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~ 165 (662)
++.++.+|..+.-+....|+++.+.+.|++.... .-.....|..+...+...|....|..+++.-......| +...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4557777777777777888888888888877542 12344567777777777788778888877765443223 333333
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHhhc-----------CChHHHHHHHHHHHHCCCCC
Q 006071 166 VMLWGFF-LSLKLETAIRFFEDMKSR--GI--SLDVVTYNTMINGYNRF-----------KKMDEAEKLFAEMKEKNIEP 229 (662)
Q Consensus 166 ~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 229 (662)
..-..|. +.+.+++++.+..++... +. ......|..+.-+|... -...++.+.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333343 346666666666665541 10 11223333333333221 11245666777766554 22
Q ss_pred CHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 006071 230 TVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (662)
Q Consensus 230 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (662)
|+.....+.--|+..++.+.|.+..++..+.+-..+...|..+.-.+...+++.+|+.+.+..... .|.|......-+
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E--~~~N~~l~~~~~ 554 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE--FGDNHVLMDGKI 554 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH--hhhhhhhchhhh
Confidence 344444455556677778888888888777654567777777777777788888888888777664 232333333333
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHH---
Q 006071 310 GVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPM--- 386 (662)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--- 386 (662)
..-...++.+++......+... |...- .....++-....+....+.-. +. ...-...++..+
T Consensus 555 ~i~~~~~~~e~~l~t~~~~L~~--------we~~~-~~q~~~~~g~~~~lk~~l~la-----~~-q~~~a~s~sr~ls~l 619 (799)
T KOG4162|consen 555 HIELTFNDREEALDTCIHKLAL--------WEAEY-GVQQTLDEGKLLRLKAGLHLA-----LS-QPTDAISTSRYLSSL 619 (799)
T ss_pred hhhhhcccHHHHHHHHHHHHHH--------HHhhh-hHhhhhhhhhhhhhhcccccC-----cc-cccccchhhHHHHHH
Confidence 3333456666665555444331 00000 000000000111111111000 00 001111222222
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCC------HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLD------PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
+..-...-..+.. +........++ ...|......+.+.++.++|...+.+..... +.....|......+.
T Consensus 620 ~a~~~~~~~se~~---Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~ 695 (799)
T KOG4162|consen 620 VASQLKSAGSELK---LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLE 695 (799)
T ss_pred HHhhhhhcccccc---cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHH
Confidence 2211111111111 22211111111 3456677778888888899888888777652 446677777778888
Q ss_pred hcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHH
Q 006071 461 RKGEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASR--VMKSMVEKGVKENLDLVAKILEALLMRGHVEE 537 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 537 (662)
..|++++|.+.|..... +.|+ .....++...+.+.|+..-|.. ++..+.+.++. +...|..++..+...|+.++
T Consensus 696 ~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHH
Confidence 88999999999998875 3455 5567788888888898777777 89999888877 78889999999999999999
Q ss_pred HHHHHHHHHh
Q 006071 538 ALGRIDLMMQ 547 (662)
Q Consensus 538 A~~~~~~~~~ 547 (662)
|.+.|....+
T Consensus 773 Aaecf~aa~q 782 (799)
T KOG4162|consen 773 AAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHh
Confidence 9999988776
No 66
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.49 E-value=5.3e-09 Score=102.38 Aligned_cols=435 Identities=13% Similarity=0.068 Sum_probs=257.3
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC-HhhHH
Q 006071 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPT-VISYT 235 (662)
Q Consensus 157 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 235 (662)
+.-+...|..+.-+....|+++.+.+.|++....-+ .....|..+...|...|.-..|..+++.-......|+ ...+-
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 445777788888888888999999999998876533 3677888888888889998889988888665432233 33333
Q ss_pred HHHHHHH-hcCCHHHHHHHHHHHhh--CCC--CCCHHHHHHHHHHHHhC-----------CCHHHHHHHHHHHHHcCCCC
Q 006071 236 TMIKGYV-AVERADDALRIFDEMKS--FDV--KPNAVTYTALLPGLCDA-----------GKMVEVQKVLREMVERYIPP 299 (662)
Q Consensus 236 ~l~~~~~-~~~~~~~a~~~~~~~~~--~~~--~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~ 299 (662)
..-..|. +.+..++++.+-.++.. .+. ...+..|..+.-+|... ....++.+.+++.++. .|
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~--d~ 475 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF--DP 475 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc--CC
Confidence 3334443 34666777776666654 110 12233444444444321 1235577777777774 56
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc
Q 006071 300 KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME 379 (662)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 379 (662)
.|+.+...+.--|+..++.+.|.+...+....+-..+...|..+.-.+...+++..|+.+.+..++... . |
T Consensus 476 ~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~----~-----N 546 (799)
T KOG4162|consen 476 TDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG----D-----N 546 (799)
T ss_pred CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh----h-----h
Confidence 677777777788888899999999999998886677888888888888889999999999988876541 1 1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHhHHHHHH
Q 006071 380 ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYICLIE 457 (662)
Q Consensus 380 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~ 457 (662)
......-++.-...++.+++......+...-..-..+ ...++-....+....+.-. ...-...++..+..
T Consensus 547 ~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~--------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 547 HVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGV--------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred hhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhH--------hhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 1111111222223466666665555444321000000 0011111112222211110 11111223332222
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCC--c------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 458 SYLRKGEPADAKTALDSMIEDGHSP--A------SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 458 ~~~~~~~~~~a~~~~~~~~~~~~~~--~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
.....+ +.+..-.. +......| + ...|......+.+.+..++|...+.++....+. ....|...+..+
T Consensus 619 l~a~~~--~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~ 694 (799)
T KOG4162|consen 619 LVASQL--KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLL 694 (799)
T ss_pred HHHhhh--hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHH
Confidence 221111 11100000 11111111 1 123444555667777778887777777655332 455566666777
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHH--HHHHHhcCCCCCChhhHHHHHHHHHhcCCHH
Q 006071 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVK--LLDFCLGRDCIIDLASYEKVLDALLAAGKTL 603 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 603 (662)
...|.+.+|.+.|...+. +.|+ ...++..+.+.|+..-|.. ++..+++.++ .++..|..++..+.+.|+.+
T Consensus 695 ~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd~~ 771 (799)
T KOG4162|consen 695 EVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGDSK 771 (799)
T ss_pred HHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccchH
Confidence 778888888888877765 4444 3456666667776666655 7777888763 34555667888888888888
Q ss_pred HHHHHHHHHHHcCCC
Q 006071 604 NAYSILFKIMEKGGV 618 (662)
Q Consensus 604 ~A~~~~~~~~~~~~~ 618 (662)
+|.+.|.-......+
T Consensus 772 ~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 772 QAAECFQAALQLEES 786 (799)
T ss_pred HHHHHHHHHHhhccC
Confidence 888888887765443
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=4.1e-09 Score=99.88 Aligned_cols=458 Identities=15% Similarity=0.146 Sum_probs=230.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADD 249 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 249 (662)
.+.+.|++++|.+...++...+ +.+...+..-+-+..+.+.+++|+.+.+.-... ..+..-+..-+.+..+.+..++
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcccHHH
Confidence 3445555666666665555543 224444445555555556666655443332110 0000000111222335566666
Q ss_pred HHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 250 ALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI 329 (662)
Q Consensus 250 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 329 (662)
|+..++... +.+..+...-...+.+.|++++|..+|+.+.+.+.+..+......++.+-... .+. +.+..
T Consensus 98 alk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~~-~~q~v- 167 (652)
T KOG2376|consen 98 ALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QVQ-LLQSV- 167 (652)
T ss_pred HHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hHH-HHHhc-
Confidence 666555221 11222444445555666666666666666665543322222222222211110 000 11111
Q ss_pred hCCCCCChhhHHHH---HHHHHcCCcHHHHHHHHHHHHHhhhhccC--CCC---CCCccc-cHHHHHHHHHhcCChhHHH
Q 006071 330 RLSIPTEAGHYGIL---IENFCKAEMYDRAIKLLDKLVEKEIILRP--QST---LDMEAS-SYNPMIQHLCHNGQTGKAE 400 (662)
Q Consensus 330 ~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~---~~~~~~-~~~~l~~~~~~~~~~~~a~ 400 (662)
...| ..+|..+ ...+...|++.+|+++++.........-. +.+ +..... .-.-+.-++...|+..+|.
T Consensus 168 --~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 168 --PEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred --cCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111 2223222 23445567777777777666332211000 000 000000 1122334556789999999
Q ss_pred HHHHHHHhcCCCCHHH----HHHHHHHHHhcCChh-HHHHHHHHHhhCCC----------CCCHHhH-HHHHHHHHhcCC
Q 006071 401 IFFRQLMKKGVLDPVA----FNNLIRGHSKEGNPD-SAFEIVKIMGRRGV----------PRDADAY-ICLIESYLRKGE 464 (662)
Q Consensus 401 ~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~----------~~~~~~~-~~l~~~~~~~~~ 464 (662)
.++...++..++|... .|.|+.+-....=++ .++..++....... ....... +.++..|. +.
T Consensus 245 ~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk 322 (652)
T KOG2376|consen 245 SIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NK 322 (652)
T ss_pred HHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hh
Confidence 9999999998666543 333333222111111 12222221111000 0011111 22233222 33
Q ss_pred hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 006071 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFE--DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRI 542 (662)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 542 (662)
-+.+.++....- +..|. ..+..++..+.+ ...+..+.+++....+..+.-.....-..+......|+++.|++++
T Consensus 323 ~~q~r~~~a~lp--~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il 399 (652)
T KOG2376|consen 323 MDQVRELSASLP--GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEIL 399 (652)
T ss_pred HHHHHHHHHhCC--ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 344444443332 22333 334444443322 2257788888888877655544556666778888999999999999
Q ss_pred H--------HHHhCCCCCCHH-HHHHHHhccCCHHHHHHHHHHHhcC-----CCCCC-hhhHHHHHHHHHhcCCHHHHHH
Q 006071 543 D--------LMMQSGSVPNFD-SLLSVLSEKGKTIAAVKLLDFCLGR-----DCIID-LASYEKVLDALLAAGKTLNAYS 607 (662)
Q Consensus 543 ~--------~~~~~~~~p~~~-~~~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~ 607 (662)
. .+.+.+..|... .+...+.+.++...|..++..++.. ...+. ...+..++..-.+.|+-++|..
T Consensus 400 ~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s 479 (652)
T KOG2376|consen 400 SLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASS 479 (652)
T ss_pred HHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHH
Confidence 9 777778888854 4555566666665566666555532 01111 2223344455567899999999
Q ss_pred HHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhh
Q 006071 608 ILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
.+++++... +++......++.+|... +++.|+.+.+.+.-.
T Consensus 480 ~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~p~ 520 (652)
T KOG2376|consen 480 LLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKKLPPL 520 (652)
T ss_pred HHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhcCCCc
Confidence 999999864 34777777899998887 788887776665543
No 68
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=1.5e-07 Score=94.91 Aligned_cols=253 Identities=17% Similarity=0.212 Sum_probs=164.5
Q ss_pred HHHHHHHhCCCC--CChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHH
Q 006071 323 DVLKAMIRLSIP--TEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAE 400 (662)
Q Consensus 323 ~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 400 (662)
.+.++..+.+++ .|+.-.+.-+.++...+-+.+.++++++++-.+ +.+.-+...-+.++-... ..+..+..
T Consensus 968 qLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~------S~Fse~~nLQnLLiLtAi-kad~trVm 1040 (1666)
T KOG0985|consen 968 QLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDN------SVFSENRNLQNLLILTAI-KADRTRVM 1040 (1666)
T ss_pred HHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCC------cccccchhhhhhHHHHHh-hcChHHHH
Confidence 455666665443 456667778889999999999999999886422 112122222222222222 22333344
Q ss_pred HHHHHHHhcCCC------------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHH
Q 006071 401 IFFRQLMKKGVL------------------------DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLI 456 (662)
Q Consensus 401 ~~~~~~~~~~~~------------------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 456 (662)
++.+++-....| +..+.+.|+. .-+++++|.++-+.. ..+..|..+.
T Consensus 1041 ~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~------n~p~vWsqla 1111 (1666)
T KOG0985|consen 1041 EYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERC------NEPAVWSQLA 1111 (1666)
T ss_pred HHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhh------CChHHHHHHH
Confidence 444443332222 2222222221 223344444443332 2567899999
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (662)
.+-.+.|...+|++-|-+. .|+..|..++..+.+.|.|++-.+++..+.+..-+|... ..++.+|.+.++..
T Consensus 1112 kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~ 1183 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLT 1183 (1666)
T ss_pred HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHH
Confidence 9999999999998777654 466788999999999999999999999888876666554 45888899999987
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 537 EALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (662)
Q Consensus 537 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 612 (662)
+-.+++ ..+...+...+++.|...|.++.|.-++... ..|..++..+...|.+..|+.--++.
T Consensus 1184 elE~fi----~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1184 ELEEFI----AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHHHHh----cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 766554 2233344667889999999999998888732 24667888889999999888766553
No 69
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.47 E-value=8.9e-09 Score=101.66 Aligned_cols=131 Identities=16% Similarity=0.165 Sum_probs=83.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPN-AVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGV 311 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 311 (662)
++..+...|...|++++|++++++.+.. .|+ +..|..-.+.+-+.|++.+|...++....- ++.|..+-+..+..
T Consensus 196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~DRyiNsK~aKy 271 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEAREL--DLADRYINSKCAKY 271 (517)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--ChhhHHHHHHHHHH
Confidence 3355566666777777777777777665 343 456666667777777777777777776653 44466666666677
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCCChhh--------HHHHHHHHHcCCcHHHHHHHHHHHHHhh
Q 006071 312 QCKSGHLNAAADVLKAMIRLSIPTEAGH--------YGILIENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 312 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
+.+.|+.++|..++....+.+..|.... ......+|.+.|++..|++.|..+.+..
T Consensus 272 ~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f 335 (517)
T PF12569_consen 272 LLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHF 335 (517)
T ss_pred HHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7777777777777777665543222211 1234567777788887777777665543
No 70
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.47 E-value=3.2e-08 Score=97.41 Aligned_cols=353 Identities=14% Similarity=0.154 Sum_probs=216.3
Q ss_pred HHHHHhhcCCCCChHHHHH-------HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhc
Q 006071 10 LQNKIRALVPQFDHNLVYN-------VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDM 82 (662)
Q Consensus 10 ~~~~~~~~~~~~~~~~l~~-------~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 82 (662)
+.++++.+....++...-+ .+...|+.+.|.+..+.+. +..+|..+.++|.+..+.+-|.-.+-.|
T Consensus 711 ~~~pLrdFvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm 783 (1416)
T KOG3617|consen 711 VAKPLRDFVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHM 783 (1416)
T ss_pred hhhhHHHhcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhh
Confidence 3466777777766655444 3345799999998887763 4558999999999988888887777666
Q ss_pred ccCC--------C-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHH
Q 006071 83 PKKG--------V-QWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKML 153 (662)
Q Consensus 83 ~~~~--------~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 153 (662)
.... . .++ ..-..+.......|..++|..+|.+.++ |..|=..|-..|.+++|.++-+.--
T Consensus 784 ~~aRgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~D 853 (1416)
T KOG3617|consen 784 KNARGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKD 853 (1416)
T ss_pred hhhhhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcc
Confidence 4321 0 111 2222333344677999999999999987 4555566777899999999876543
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhh
Q 006071 154 SEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVIS 233 (662)
Q Consensus 154 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 233 (662)
+. . -..||......+-..++.+.|++.|++.... --.++..|. .++...+.+.+.+. |...
T Consensus 854 Ri--H-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L 914 (1416)
T KOG3617|consen 854 RI--H-LRNTYYNYAKYLEARRDIEAALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESL 914 (1416)
T ss_pred ce--e-hhhhHHHHHHHHHhhccHHHHHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHH
Confidence 22 1 2345555666666778899999998875321 222222221 12333333333332 4455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q 006071 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQC 313 (662)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 313 (662)
|.-...-+-..|+.+.|+.+|..... |-++++..|-.|+.++|-++-++- .|..+-..+.+.|-
T Consensus 915 ~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es-------gd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 915 YSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES-------GDKAACYHLARMYE 978 (1416)
T ss_pred HHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc-------ccHHHHHHHHHHhh
Confidence 55555555677888888888877653 456667777788888888776542 26667777888888
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-------------C--CcHHHHHHHHHHHHHhhhhccCCCCCCC
Q 006071 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCK-------------A--EMYDRAIKLLDKLVEKEIILRPQSTLDM 378 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~--~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 378 (662)
..|++.+|...|.+... +...|+.|-. . .+.-.|-..|++. +.
T Consensus 979 n~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~--------g~----- 1036 (1416)
T KOG3617|consen 979 NDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL--------GG----- 1036 (1416)
T ss_pred hhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc--------ch-----
Confidence 88888888888876643 2222222211 1 1223333444443 10
Q ss_pred ccccHHHHHHHHHhcCChhHHHHH---------HHHHHhc-C-CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIF---------FRQLMKK-G-VLDPVAFNNLIRGHSKEGNPDSAFEIVKI 439 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~---------~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 439 (662)
.+...+..|.+.|.+.+|+++ ++.+.+. . ..|+...+.-.+.++...++++|..++-.
T Consensus 1037 ---~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ 1105 (1416)
T KOG3617|consen 1037 ---YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCL 1105 (1416)
T ss_pred ---hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 122334455666666666543 2222221 1 45677777777777777777777666543
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=3.8e-09 Score=95.51 Aligned_cols=266 Identities=13% Similarity=0.093 Sum_probs=160.1
Q ss_pred CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCChhHHHHHHHHHHhcCC
Q 006071 333 IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGV 411 (662)
Q Consensus 333 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 411 (662)
++.+......+...+...|+.++|+..|++.... .|+. .......-.+...|+.+....+...+.....
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~----------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~ 297 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA----------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK 297 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC----------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh
Confidence 4566667777777777777777777777776321 1221 1122222234456777777666666665553
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC-cHHhHHHH
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP-ASSLFRSV 490 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l 490 (662)
.....|..-+......+++..|+.+-++.++.+. .+...|..-...+...|++++|.-.|+..+. +.| +...|..+
T Consensus 298 ~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL 374 (564)
T KOG1174|consen 298 YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGL 374 (564)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHH
Confidence 3444444444555556677777777777766532 2445555555666777777777777777764 333 45677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHhcc
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL-EALL-MRGHVEEALGRIDLMMQSGSVPNF----DSLLSVLSEK 564 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~ 564 (662)
+..|...|++.+|...-......- .-+..+...+. ..+. ...--++|.+++++.+. ..|++ ..+...+...
T Consensus 375 ~hsYLA~~~~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~E 451 (564)
T KOG1174|consen 375 FHSYLAQKRFKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVE 451 (564)
T ss_pred HHHHHhhchHHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhh
Confidence 777777777777777666655541 22444444332 2222 12223667777776665 55553 3345555667
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
|+.++++.++++.+.. .++...+..+++.+...+.+.+|++.|...+...
T Consensus 452 g~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 452 GPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred CccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 7777777777777765 3444555567777777777777777777776653
No 72
>PRK12370 invasion protein regulator; Provisional
Probab=99.44 E-value=8.3e-11 Score=120.50 Aligned_cols=249 Identities=14% Similarity=0.110 Sum_probs=130.7
Q ss_pred ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH---------hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC
Q 006071 71 KLNHARCILLDMPKKGVQWDEDMFEVLIESYG---------KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR 141 (662)
Q Consensus 71 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~ 141 (662)
++++|...|++..+..+. +...|..+..++. ..+++++|...++++.+.+ +.+...+..+..++...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 456666666666655433 3444444443332 1233566667776666654 3455566666666666677
Q ss_pred hhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 006071 142 YMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAE 221 (662)
Q Consensus 142 ~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 221 (662)
+++|...|++.++.+ +.+...+..+...+...|++++|...+++..+..+. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777666653 223445555666666667777777777776665332 222222333344556666777776666
Q ss_pred HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CC
Q 006071 222 MKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA-VTYTALLPGLCDAGKMVEVQKVLREMVERYI-PP 299 (662)
Q Consensus 222 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~ 299 (662)
......+.+...+..+..++...|+.++|...+.++... .|+. ...+.+...+...| +.+...++.+.+..- .+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 654321223334555666666677777777766665443 2332 23333444445555 355555555444211 11
Q ss_pred CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006071 300 KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRL 331 (662)
Q Consensus 300 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 331 (662)
....+ ....+.-.|+.+.+..+ +++.+.
T Consensus 508 -~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 -NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred -cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11111 33344445555555544 555443
No 73
>PRK12370 invasion protein regulator; Provisional
Probab=99.43 E-value=6.8e-11 Score=121.14 Aligned_cols=249 Identities=13% Similarity=-0.001 Sum_probs=183.4
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh---------cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCC
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK---------EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGE 464 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 464 (662)
+..++|..+|++..+..|.++..+..+..++.. .+++++|...++++.+.+.. +...+..+...+...|+
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 346789999999999998888888877766542 24478999999999987533 77888889999999999
Q ss_pred hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 006071 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDL 544 (662)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 544 (662)
+++|...++++.+.+ +.+...+..+...+...|++++|+..++++++.++.+ ...+..++..+...|++++|+..+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTR-AAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-hhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999754 2335667778888999999999999999999987663 33333345557778999999999998
Q ss_pred HHhC--CCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcH
Q 006071 545 MMQS--GSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDW 621 (662)
Q Consensus 545 ~~~~--~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 621 (662)
+... +..|. ...+..++...|+.++|...+++..... +.+....+.++..|...| ++|...++++.+.... .+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~-~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQR-ID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhH-hh
Confidence 8763 22333 2346667778999999999998766553 334444556777777777 4788888886664332 11
Q ss_pred hhHHHHHHHHHhcCCcchhHHHHHHhhhh
Q 006071 622 KSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 622 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
.....+...|.-.|+.+.+..+ +.+.+.
T Consensus 508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 1222255667778888888766 444443
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.43 E-value=2.7e-09 Score=105.22 Aligned_cols=298 Identities=14% Similarity=0.157 Sum_probs=175.0
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH------hC
Q 006071 206 YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC------DA 279 (662)
Q Consensus 206 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~------~~ 279 (662)
+...|++++|++.++.-... +.............+.+.|+.++|..+|..++..+ |+...|...+..+. ..
T Consensus 14 l~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~~ 90 (517)
T PF12569_consen 14 LEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLSD 90 (517)
T ss_pred HHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhccccc
Confidence 34445555555555443332 22222333444445555555555555555555442 33333322222222 11
Q ss_pred CCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh-HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHH
Q 006071 280 GKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL-NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIK 358 (662)
Q Consensus 280 g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 358 (662)
.+.+....+++++.... | .......+.-.+.....+ ..+..++......|+|+ +|+.+-..|.......-...
T Consensus 91 ~~~~~~~~~y~~l~~~y--p-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 91 EDVEKLLELYDELAEKY--P-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred ccHHHHHHHHHHHHHhC--c-cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 23444555555554431 2 111111111111111111 23334445555555433 45555555554444444455
Q ss_pred HHHHHHHhhhhccC------CCCCCCccccH--HHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 006071 359 LLDKLVEKEIILRP------QSTLDMEASSY--NPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (662)
Q Consensus 359 ~~~~~~~~~~~~~~------~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (662)
++............ ...-.|+...| ..+...|...|++++|+++.+..+.+.|..+..|..-.+.+-+.|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 55554432211000 01123444334 55567788999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHH------hH--HHHHHHHHhcCCHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASS------LF--RSVMESLFEDGRVQT 502 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~--~~l~~~~~~~g~~~~ 502 (662)
.+|.+.++..+..+.. |...-+-.+..+.++|++++|..++..+.+.+..|-.. .| .....+|.+.|++..
T Consensus 245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ 323 (517)
T PF12569_consen 245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL 323 (517)
T ss_pred HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999997655 78888888999999999999999999998766433322 12 344567899999999
Q ss_pred HHHHHHHHHHc
Q 006071 503 ASRVMKSMVEK 513 (662)
Q Consensus 503 a~~~~~~~~~~ 513 (662)
|++.|..+.+.
T Consensus 324 ALk~~~~v~k~ 334 (517)
T PF12569_consen 324 ALKRFHAVLKH 334 (517)
T ss_pred HHHHHHHHHHH
Confidence 99888877653
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=1.5e-10 Score=106.09 Aligned_cols=197 Identities=17% Similarity=0.121 Sum_probs=120.5
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006071 449 ADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEA 528 (662)
Q Consensus 449 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (662)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+..+. +...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence 4455566666666666666666666665432 223445555566666667777777777666665443 44455556666
Q ss_pred HHhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHH
Q 006071 529 LLMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLN 604 (662)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 604 (662)
+...|++++|++.++++...+..|. ...++..+...|++++|...+++++...+. +...+..++..+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 6677777777777776665322222 223445556677777777777777765432 34455567777777777777
Q ss_pred HHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhh
Q 006071 605 AYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (662)
Q Consensus 605 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (662)
|.+.+++.... .+.+...+..+...+...|+.++|..+.+.+..
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 77777777665 233444444566667777777777666555543
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=3.4e-11 Score=104.93 Aligned_cols=238 Identities=10% Similarity=0.102 Sum_probs=193.2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA 380 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 380 (662)
|-.--..+..+|.+.|.+..|...++...+. .|-+.||..|-.+|.+..++..|+.++.+-++.. +-++
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f---------P~~V 290 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF---------PFDV 290 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC---------Cchh
Confidence 3444566788888889988888888887775 5667788888899999999999999998875432 2233
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
....-+...+...++.++|.++++...+..+.+.....++...|...++++-|+.+++.+.+.|+. ++..|+.+.-+|.
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~ 369 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHH
Confidence 344556677778899999999999999999889999999999999999999999999999998877 8889999999999
Q ss_pred hcCChHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 461 RKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
-.++++-++..|++....--.|+ ..+|..+.......||+.-|.+.|+-.+..+.. +.+.++.+.-.-.+.|++++|
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHH
Confidence 99999999999999886544344 456777777788899999999999988877655 677788888888899999999
Q ss_pred HHHHHHHHhCCCCCC
Q 006071 539 LGRIDLMMQSGSVPN 553 (662)
Q Consensus 539 ~~~~~~~~~~~~~p~ 553 (662)
..++..... ..|+
T Consensus 449 rsll~~A~s--~~P~ 461 (478)
T KOG1129|consen 449 RSLLNAAKS--VMPD 461 (478)
T ss_pred HHHHHHhhh--hCcc
Confidence 999887765 4444
No 77
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=5e-11 Score=103.93 Aligned_cols=236 Identities=14% Similarity=0.083 Sum_probs=181.6
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH-HHHH
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY-TALL 273 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~ll 273 (662)
|..--+.+..+|.+.|.+.+|.+.|+..... .|-+.||..|-++|.+..++..|+.+|.+-.+. .|-.+|| ..+.
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3444467888899999999999998887765 567788888889999999999999999887765 4555554 4566
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcH
Q 006071 274 PGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMY 353 (662)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 353 (662)
+.+-..++.+++.++|+...+. .|.+......+...|.-.++.+.|+.+|+++.+.|+ .++..|..+.-+|.-.+++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~--~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKL--HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhc--CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 7778888899999999988885 566777777777788888888999999999988884 5677788788788888888
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHH
Q 006071 354 DRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSA 433 (662)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 433 (662)
+-++..|.+.+... ...+ .....|-.+.......|++..|...|+.....++.+...++.|.-.-.+.|++++|
T Consensus 375 D~~L~sf~RAlsta----t~~~--~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A 448 (478)
T KOG1129|consen 375 DLVLPSFQRALSTA----TQPG--QAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA 448 (478)
T ss_pred hhhHHHHHHHHhhc----cCcc--hhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence 88888888875432 1111 12335666666666778888888888888888777888888888888888888888
Q ss_pred HHHHHHHhhC
Q 006071 434 FEIVKIMGRR 443 (662)
Q Consensus 434 ~~~~~~~~~~ 443 (662)
..++......
T Consensus 449 rsll~~A~s~ 458 (478)
T KOG1129|consen 449 RSLLNAAKSV 458 (478)
T ss_pred HHHHHHhhhh
Confidence 8888777664
No 78
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=6.5e-08 Score=92.02 Aligned_cols=454 Identities=14% Similarity=0.119 Sum_probs=250.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
..+..=+..+...|++++|.+...++...++ -+...+..-+.+.++.++|++|+.+.+.-.... ..+...+ .-.-+.
T Consensus 13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~p-dd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~f-EKAYc~ 89 (652)
T KOG2376|consen 13 EALLTDLNRHGKNGEYEEAVKTANKILSIVP-DDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFFF-EKAYCE 89 (652)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHhcCC-CcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhhH-HHHHHH
Confidence 3445556777888999999999999888663 377788888888899999999996655433110 0111111 112233
Q ss_pred HHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChHHH
Q 006071 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISL-DVVTYNTMINGYNRFKKMDEA 215 (662)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a 215 (662)
.+.+..++|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+.+.+. +...-..++.+-. .-.+
T Consensus 90 Yrlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~ 161 (652)
T KOG2376|consen 90 YRLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQV 161 (652)
T ss_pred HHcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhH
Confidence 46788999998888331 2234466666677888999999999999998774431 1111122222111 1111
Q ss_pred HHHHHHHHHCCCCCCHhhHHH---HHHHHHhcCCHHHHHHHHHHHhhC-------CCCCCH-------HHHHHHHHHHHh
Q 006071 216 EKLFAEMKEKNIEPTVISYTT---MIKGYVAVERADDALRIFDEMKSF-------DVKPNA-------VTYTALLPGLCD 278 (662)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~ll~~~~~ 278 (662)
. +.+.... .| ..+|.. ..-.++..|++.+|++++...... +-..+. ..-..+..++..
T Consensus 162 ~-~~q~v~~---v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~ 236 (652)
T KOG2376|consen 162 Q-LLQSVPE---VP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQL 236 (652)
T ss_pred H-HHHhccC---CC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 1 2222221 22 223433 344566789999999999887211 101111 112233445667
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhc---CC-hH-HHHHHHHHHHhCCC----------CCChhhH-HH
Q 006071 279 AGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKS---GH-LN-AAADVLKAMIRLSI----------PTEAGHY-GI 342 (662)
Q Consensus 279 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~-~~-~a~~~~~~~~~~~~----------~~~~~~~-~~ 342 (662)
.|+..+|..++...++.. |.|.........-.... .+ ++ .++..++....... .-..... +.
T Consensus 237 ~Gqt~ea~~iy~~~i~~~--~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 237 QGQTAEASSIYVDIIKRN--PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred hcchHHHHHHHHHHHHhc--CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998888873 33543332222221111 11 11 11111211111000 0000111 11
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHH--hcCChhHHHHHHHHHHhcCCCC-HHHHHH
Q 006071 343 LIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLC--HNGQTGKAEIFFRQLMKKGVLD-PVAFNN 419 (662)
Q Consensus 343 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 419 (662)
++..|. +.-+.+.++.... .+..|.. .+..++..+. +......+.+++....+..+.+ ..+...
T Consensus 315 lL~l~t--nk~~q~r~~~a~l----------p~~~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~ 381 (652)
T KOG2376|consen 315 LLALFT--NKMDQVRELSASL----------PGMSPES-LFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLL 381 (652)
T ss_pred HHHHHh--hhHHHHHHHHHhC----------CccCchH-HHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHH
Confidence 222221 2223333333222 1122322 2333333322 2224667777777777666444 556677
Q ss_pred HHHHHHhcCChhHHHHHHH--------HHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--CCCCcHHh---
Q 006071 420 LIRGHSKEGNPDSAFEIVK--------IMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED--GHSPASSL--- 486 (662)
Q Consensus 420 l~~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~--- 486 (662)
.++.....|+++.|.+++. .+.+.+. .+.+...+...+.+.++.+.|..++...+.. .-.+....
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~ 459 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLS 459 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHh
Confidence 7788888899999998888 4444333 3445556667777777777777777766532 11122222
Q ss_pred -HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 487 -FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 487 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
+..+...-.+.|+.++|..+++++.+.++. +..+...++.+|++. +++.|..+-+.+
T Consensus 460 ~~~~aa~f~lr~G~~~ea~s~leel~k~n~~-d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 460 LMREAAEFKLRHGNEEEASSLLEELVKFNPN-DTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHhHHHHhcCchHHHHHHHHHHHHhCCc-hHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 222233335578899999999998887554 777777788888765 667777665544
No 79
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.37 E-value=5.6e-10 Score=102.26 Aligned_cols=199 Identities=17% Similarity=0.187 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 006071 267 VTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIEN 346 (662)
Q Consensus 267 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 346 (662)
..+..+...+...|++++|...+++..+. .|.+...+..+...+...|+++.|...+++..+.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34445555555566666666666655543 34445555555566666666666666666555543 3334445555556
Q ss_pred HHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh
Q 006071 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK 426 (662)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 426 (662)
+...|++++|...++..+... ........+..+..++...|++++|...+.+.....+.+...+..+...+..
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDP-------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYL 181 (234)
T ss_pred HHHcccHHHHHHHHHHHHhcc-------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHH
Confidence 666666666666666654311 0011122344445555566666666666666665555555556666666666
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
.|++++|...++..... .+.+...+..++..+...|+.++|..+.+.+.
T Consensus 182 ~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 182 RGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666665554 23344455555555556666666666555544
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.36 E-value=8e-10 Score=92.07 Aligned_cols=204 Identities=18% Similarity=0.123 Sum_probs=152.4
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEAL 529 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (662)
.+...|.-.|.+.|+...|..-+++.++.. +.+..++..+...|.+.|..+.|.+.|++++...+. +..+.|....-+
T Consensus 36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL 113 (250)
T COG3063 36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence 345667778888888888888888888754 223567777777888888888888888888887666 677778888888
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006071 530 LMRGHVEEALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 605 (662)
|..|++++|.+.|++.+..+.-|. +..++.+-.++|+.+.|..+++++++.++..++.. ..+++..++.|++-+|
T Consensus 114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~-l~~a~~~~~~~~y~~A 192 (250)
T COG3063 114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPAL-LELARLHYKAGDYAPA 192 (250)
T ss_pred HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHH-HHHHHHHHhcccchHH
Confidence 888888999888888887554443 33455555578888899999998888875555443 4688888889999999
Q ss_pred HHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhccccchh
Q 006071 606 YSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQK 657 (662)
Q Consensus 606 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 657 (662)
.-++++....++ ....+.--.+..-...|+.+.|.+....+.+.-+.+.+.
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~e~ 243 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSEEY 243 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHH
Confidence 888888777766 555555556666777888888877666666655554443
No 81
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.31 E-value=5.6e-09 Score=87.14 Aligned_cols=199 Identities=18% Similarity=0.205 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006071 268 TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (662)
Q Consensus 268 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (662)
+...+.-.|...|++..|..-+++.++. +|++..++..+...|.+.|+.+.|.+.|+...+.. |.+..+.|.....+
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FL 113 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFL 113 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHH
Confidence 3455666788888888888888888885 67778888888888888888888888888888764 56677788888888
Q ss_pred HcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Q 006071 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE 427 (662)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 427 (662)
|..|++++|...|+..+.. | ....-..+|..+.-|..+.|+.+.|...|++..+..+..+.+...+.+.....
T Consensus 114 C~qg~~~eA~q~F~~Al~~-----P--~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~ 186 (250)
T COG3063 114 CAQGRPEEAMQQFERALAD-----P--AYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKA 186 (250)
T ss_pred HhCCChHHHHHHHHHHHhC-----C--CCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhc
Confidence 8888999999988888643 2 22223457778888888899999999999999998888888888899999999
Q ss_pred CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 428 GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 428 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
|++-.|..+++.....+. ++.......|..-...|+.+.+.+.=..+.+
T Consensus 187 ~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 187 GDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred ccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 999999999988887754 7888888888888888888888777666664
No 82
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=99.30 E-value=3.5e-07 Score=92.45 Aligned_cols=583 Identities=12% Similarity=0.010 Sum_probs=292.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC-CCHHHHHHHHHHHH
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQ-WDEDMFEVLIESYG 102 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~ 102 (662)
..+..+++..-+...|.+-|+.+-+.+ +.+..++......|....+++.|..+.-...+.... .-..-|....-.|.
T Consensus 496 ~~LG~iYrd~~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL 573 (1238)
T KOG1127|consen 496 AFLGQIYRDSDDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL 573 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence 445556666667788888888887776 677788888888888888888887774433322110 01122333444556
Q ss_pred hcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH--HHHHHhcCCHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM--LWGFFLSLKLETA 180 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~~~a 180 (662)
..++...|+..|+...+.. |.|...|..+..+|.+.|++..|+++|.+.... .|+. +|... ....+..|.+.++
T Consensus 574 ea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~~ecd~GkYkea 649 (1238)
T KOG1127|consen 574 EAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAVMECDNGKYKEA 649 (1238)
T ss_pred CccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHHHHHHhhhHHHH
Confidence 6677777777777766643 346667777777777777777777777666543 2221 12111 1123345666666
Q ss_pred HHHHHHHHhCC------CCCCHHHHHHHHHHHhhc-------CChHHHHHHHHHHHHCCCC-------------------
Q 006071 181 IRFFEDMKSRG------ISLDVVTYNTMINGYNRF-------KKMDEAEKLFAEMKEKNIE------------------- 228 (662)
Q Consensus 181 ~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~-------g~~~~a~~~~~~~~~~~~~------------------- 228 (662)
...+..+.... ..--..++..+...+... .-++++.+.|.........
T Consensus 650 ld~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~ 729 (1238)
T KOG1127|consen 650 LDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQE 729 (1238)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHh
Confidence 66555544210 000011111111111000 0112222222222211101
Q ss_pred -C------------------------------------------CHhhHHHHHHHHHh-------c-CCHHHHHHHHHHH
Q 006071 229 -P------------------------------------------TVISYTTMIKGYVA-------V-ERADDALRIFDEM 257 (662)
Q Consensus 229 -~------------------------------------------~~~~~~~l~~~~~~-------~-~~~~~a~~~~~~~ 257 (662)
| +..+|..++..|.+ . .+...|+..+...
T Consensus 730 e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kka 809 (1238)
T KOG1127|consen 730 EPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKA 809 (1238)
T ss_pred cccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHH
Confidence 1 11222222222211 0 1112344444443
Q ss_pred hhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 006071 258 KSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEA 337 (662)
Q Consensus 258 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 337 (662)
.+.. ..+..+|+.+.-. ...|++.-+.-.|-+... ..|.+..+|..+...+.+..+++.|...|....... |.+.
T Consensus 810 V~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLd-P~nl 884 (1238)
T KOG1127|consen 810 VSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLD-PLNL 884 (1238)
T ss_pred HHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcC-chhh
Confidence 3321 2233334333322 333444444444433333 245556666666666677778888888888777653 4445
Q ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH----------HHHHHHHH
Q 006071 338 GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA----------EIFFRQLM 407 (662)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a----------~~~~~~~~ 407 (662)
..|.-........|+.-+...+|..-.+.. ...+-.++...|.........+|+.+.- .-.++...
T Consensus 885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~----~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf 960 (1238)
T KOG1127|consen 885 VQWLGEALIPEAVGRIIERLILFAHSDELC----SKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYF 960 (1238)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhHHhh----ccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHH
Confidence 555444444445666667777766532222 2333344544454444444555554443 33444445
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHH----HHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYI----CLIESYLRKGEPADAKTALDSMIEDGHSP 482 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 482 (662)
...|.+..+|...+...-+.+.+..|.+...+.... ....+...|+ .+.+.++..|+++.|...+...- ...
T Consensus 961 ~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~---~ev 1037 (1238)
T KOG1127|consen 961 LGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEW---MEV 1037 (1238)
T ss_pred hcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccc---hhH
Confidence 555777888888888888888888887776654320 1123445555 34455666777776654443221 111
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHH--
Q 006071 483 ASSLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKEN-LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLL-- 558 (662)
Q Consensus 483 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~-- 558 (662)
+......-+. ..-.|+++++.+.|+++... +..-+ ......++.+....+.-+.|...+-+.... ..|+...+.
T Consensus 1038 dEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~l-s~~~~~sll~L 1115 (1238)
T KOG1127|consen 1038 DEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKSL-SKVQASSLLPL 1115 (1238)
T ss_pred HHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHHh-CccchhhHHHH
Confidence 2221111111 24468999999999998875 22223 344566777777888888888766655541 223322211
Q ss_pred ---HHHh-ccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 006071 559 ---SVLS-EKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLI 628 (662)
Q Consensus 559 ---~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 628 (662)
..+- ..-.-..+++-+++......-.-+..+ ..-..|.+.|+-.-.-+++++..-..+ .+...|..|-
T Consensus 1116 ~A~~ild~da~~ssaileel~kl~k~e~~~~~~~l-l~e~i~~~~~r~~~vk~~~qr~~h~~P-~~~~~WslL~ 1187 (1238)
T KOG1127|consen 1116 PAVYILDADAHGSSAILEELEKLLKLEWFCWPPGL-LKELIYALQGRSVAVKKQIQRAVHSNP-GDPALWSLLS 1187 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHhhhhHHhccChhH-HHHHHHHHhhhhHHHHHHHHHHHhcCC-CChHHHHHHH
Confidence 1111 111111122222222221100111222 233445567888777788888775432 2444444443
No 83
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.28 E-value=2.2e-09 Score=104.42 Aligned_cols=234 Identities=16% Similarity=0.128 Sum_probs=122.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC-----CC-CCCH-HhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CC-C
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRR-----GV-PRDA-DAYICLIESYLRKGEPADAKTALDSMIED-----GH-S 481 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~ 481 (662)
.+...+...|...|+++.|..+++...+. |. .|.. ...+.+...|...+++.+|..+|+++..- |- .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666666666666666655432 10 1122 22233555666666666666666666532 11 1
Q ss_pred Cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHh---CCC
Q 006071 482 PA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK-EN-LDLVAKILEALLMRGHVEEALGRIDLMMQ---SGS 550 (662)
Q Consensus 482 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~ 550 (662)
|. ..+++.|..+|.+.|++++|...++.+.+. +.. |. ...++.+...+...+++++|..++++.++ .-+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 11 234455555666666666666666665432 111 11 12234555566666666666666665443 111
Q ss_pred CCC-------HHHHHHHHhccCCHHHHHHHHHHHhcCC----CCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH--
Q 006071 551 VPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGRD----CIID---LASYEKVLDALLAAGKTLNAYSILFKIME-- 614 (662)
Q Consensus 551 ~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 614 (662)
.++ ...+...|...|++++|..++++++... ...+ ...++.++..|.+.+++.+|.++|.....
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 1235556666677777777766666432 1111 23445566666666666666666665331
Q ss_pred -c--CCC-CcHhhHHHHHHHHHhcCCcchhHHHHHHhh
Q 006071 615 -K--GGV-TDWKSSDKLIAGLNQEGNTKQADILSRMIR 648 (662)
Q Consensus 615 -~--~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 648 (662)
. .+. ....+|..|+..|...|++++|..+.+.+.
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 1 111 123355566777777777777755555544
No 84
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.27 E-value=4e-07 Score=88.85 Aligned_cols=196 Identities=15% Similarity=0.182 Sum_probs=127.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCC
Q 006071 272 LLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAE 351 (662)
Q Consensus 272 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 351 (662)
.+.+......+.+|+.+++.+..+.. ....|..+.+.|...|+++.|.++|.+.- .++-.|.+|.+.|
T Consensus 738 aieaai~akew~kai~ildniqdqk~---~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 738 AIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccc
Confidence 34555667788888888888776532 34456677788888888888888886542 3566788888888
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChh
Q 006071 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPD 431 (662)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 431 (662)
+|..|.++-++... .......|.+-..-.-..|++.+|.++|-.+ +.|+ ..+.+|-+.|..+
T Consensus 806 kw~da~kla~e~~~----------~e~t~~~yiakaedldehgkf~eaeqlyiti---~~p~-----~aiqmydk~~~~d 867 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHG----------PEATISLYIAKAEDLDEHGKFAEAEQLYITI---GEPD-----KAIQMYDKHGLDD 867 (1636)
T ss_pred cHHHHHHHHHHhcC----------chhHHHHHHHhHHhHHhhcchhhhhheeEEc---cCch-----HHHHHHHhhCcch
Confidence 88888888777621 1123344544455566777887777766432 2233 2466777777777
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (662)
Q Consensus 432 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (662)
..+++...-.. ..-..|...+..-+...|+...|...|-+.. -|.+.+..|..++.|++|.++-+.
T Consensus 868 dmirlv~k~h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 868 DMIRLVEKHHG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHhCh---hhhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 77766654332 1123455566667777788888877665543 245556667777777777665543
No 85
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=3.6e-06 Score=85.35 Aligned_cols=85 Identities=19% Similarity=0.172 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCC------CCHHhHHHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVP------RDADAYICL 455 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~------~~~~~~~~l 455 (662)
...++..|...|.+++.+.+++............|+-|.-.|++- .+++..+.++....+ +++ -..+.|+.+
T Consensus 1282 Leeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~El 1360 (1666)
T KOG0985|consen 1282 LEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSEL 1360 (1666)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 344555566666666666666665544444555666666666553 455555544443321 111 123456666
Q ss_pred HHHHHhcCChHHH
Q 006071 456 IESYLRKGEPADA 468 (662)
Q Consensus 456 ~~~~~~~~~~~~a 468 (662)
+-.|.+-..++.|
T Consensus 1361 vfLY~~y~eyDNA 1373 (1666)
T KOG0985|consen 1361 VFLYDKYEEYDNA 1373 (1666)
T ss_pred HHHHHhhhhhhHH
Confidence 6666655555544
No 86
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.26 E-value=8.2e-07 Score=86.75 Aligned_cols=459 Identities=15% Similarity=0.128 Sum_probs=238.5
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhccc--------------------CCCC
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK--------------------KGVQ 88 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------------~~~~ 88 (662)
.-...|+++.|..+++... .+ |.....|..+.......|+.--|.++|..+-+ .|-.
T Consensus 453 aaid~~df~ra~afles~~-~~--~da~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggd 529 (1636)
T KOG3616|consen 453 AAIDDGDFDRATAFLESLE-MG--PDAEAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGD 529 (1636)
T ss_pred cccccCchHHHHHHHHhhc-cC--ccHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCC
Confidence 3445789999998888763 22 33444566666666666666666555543321 0100
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVML 168 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll 168 (662)
.+..|..-.....-..++.+|..+|-+-- + -...|..|....+|++|+.+-+.. |.+.-...-.+.+
T Consensus 530 -gt~fykvra~lail~kkfk~ae~ifleqn------~---te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~ 596 (1636)
T KOG3616|consen 530 -GTDFYKVRAMLAILEKKFKEAEMIFLEQN------A---TEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYL 596 (1636)
T ss_pred -CchHHHHHHHHHHHHhhhhHHHHHHHhcc------c---HHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHH
Confidence 11112111111112223444444442211 0 112333444445555555543322 2211112223334
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHH
Q 006071 169 WGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERAD 248 (662)
Q Consensus 169 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 248 (662)
.++...|+-++|-++- .. +-.+ .+.|+.|.+.|.+..|.+....=.. +..|......+..++.+..-++
T Consensus 597 q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elyd 665 (1636)
T KOG3616|consen 597 QALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYD 665 (1636)
T ss_pred HHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHH
Confidence 4444455554443321 11 1111 2345666666766665543321111 1235555555555566656666
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHH-HHHHHHHHHHhcCChHHHHHHHHH
Q 006071 249 DALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNS-VFMKLLGVQCKSGHLNAAADVLKA 327 (662)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 327 (662)
+|-.+|+.+.. | ...+.++.+-.-+.+|+++-+-. .|.... .-......+...|+++.|...|-+
T Consensus 666 kagdlfeki~d----~-----dkale~fkkgdaf~kaielarfa-----fp~evv~lee~wg~hl~~~~q~daainhfie 731 (1636)
T KOG3616|consen 666 KAGDLFEKIHD----F-----DKALECFKKGDAFGKAIELARFA-----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIE 731 (1636)
T ss_pred hhhhHHHHhhC----H-----HHHHHHHHcccHHHHHHHHHHhh-----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHH
Confidence 66666665542 1 12223333333344444443322 121111 112233445556777777666644
Q ss_pred HHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006071 328 MIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLM 407 (662)
Q Consensus 328 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 407 (662)
... .-..+.+.....+|.+|+.+++.+.++. .....|..+...|+..|+++.|.++|...
T Consensus 732 a~~---------~~kaieaai~akew~kai~ildniqdqk----------~~s~yy~~iadhyan~~dfe~ae~lf~e~- 791 (1636)
T KOG3616|consen 732 ANC---------LIKAIEAAIGAKEWKKAISILDNIQDQK----------TASGYYGEIADHYANKGDFEIAEELFTEA- 791 (1636)
T ss_pred hhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhc----------cccccchHHHHHhccchhHHHHHHHHHhc-
Confidence 321 2334566667788888888888774332 12234666777888888888888888653
Q ss_pred hcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhH
Q 006071 408 KKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF 487 (662)
Q Consensus 408 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 487 (662)
..++-.+.+|.+.|+++.|.++-.+.. |.......|..-..-+-++|++.+|.+++-... .|+
T Consensus 792 -------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~---- 854 (1636)
T KOG3616|consen 792 -------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD---- 854 (1636)
T ss_pred -------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch----
Confidence 235667788888888888888765554 334455666666666777888888877766542 244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCH
Q 006071 488 RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKT 567 (662)
Q Consensus 488 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~ 567 (662)
..+..|-+.|..++.+++.++-.... -..+-..+..-|-..|+..+|.+.|-+.- ++...++.|...+-+
T Consensus 855 -~aiqmydk~~~~ddmirlv~k~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~------d~kaavnmyk~s~lw 924 (1636)
T KOG3616|consen 855 -KAIQMYDKHGLDDDMIRLVEKHHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAG------DFKAAVNMYKASELW 924 (1636)
T ss_pred -HHHHHHHhhCcchHHHHHHHHhChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhh------hHHHHHHHhhhhhhH
Confidence 33456777777777777666542221 12334456666677777777776554332 233445555555666
Q ss_pred HHHHHHHH
Q 006071 568 IAAVKLLD 575 (662)
Q Consensus 568 ~~A~~~~~ 575 (662)
++|-++.+
T Consensus 925 ~dayriak 932 (1636)
T KOG3616|consen 925 EDAYRIAK 932 (1636)
T ss_pred HHHHHHHh
Confidence 66655543
No 87
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=6e-09 Score=97.52 Aligned_cols=205 Identities=15% Similarity=-0.016 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc-HHhHHHHHHH
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA-SSLFRSVMES 493 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 493 (662)
..|..+...+...|+.++|...|+...+..+ .+...|+.+...+...|++++|...|++.++. .|+ ...+..+...
T Consensus 65 ~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~ 141 (296)
T PRK11189 65 QLHYERGVLYDSLGLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIA 141 (296)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3455555555555666666665555555432 24555555666666666666666666665542 232 3444445555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHH--H
Q 006071 494 LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAA--V 571 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A--~ 571 (662)
+...|++++|.+.++...+.++.. .. .......+...+++++|++.+++.... ..|+...+.......|+..++ .
T Consensus 142 l~~~g~~~eA~~~~~~al~~~P~~-~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~lg~~~~~~~~ 218 (296)
T PRK11189 142 LYYGGRYELAQDDLLAFYQDDPND-PY-RALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGWNIVEFYLGKISEETLM 218 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCC-HH-HHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHHHHHHHHccCCCHHHHH
Confidence 555666666666666665554331 11 111111223345566666666443321 122211112222223333222 2
Q ss_pred HHHHHHhcCCCC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHH
Q 006071 572 KLLDFCLGRDCI---IDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDK 626 (662)
Q Consensus 572 ~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 626 (662)
+.+...++..+. .....|..++..+.+.|++++|+..|++.+... +++...+..
T Consensus 219 ~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 219 ERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 222212211111 113456667777777777777777777777654 334444443
No 88
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.8e-07 Score=92.37 Aligned_cols=455 Identities=16% Similarity=0.187 Sum_probs=235.4
Q ss_pred CCHHHHHHHHH--HHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC-C--------C
Q 006071 89 WDEDMFEVLIE--SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-G--------I 157 (662)
Q Consensus 89 ~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~--------~ 157 (662)
-|..+...++. .|..-|+.+.|.+-++.++ +...|..+.+.|.+.++.+-|.-.+..|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 36666666664 4667788888887777664 3457888888888887777766555544321 0 0
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006071 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (662)
.++ .+-..+.......|.+++|+.+|.+..+. ..|=..|-..|.+++|.++-+.-..-. -..||...
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~y 864 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNY 864 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHH
Confidence 111 11111222233557777777777666543 223334555677777776654432211 22355555
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCC
Q 006071 238 IKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGH 317 (662)
Q Consensus 238 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 317 (662)
..-+-..++.+.|++.|++... |--..+..+. .++.....+.+++ .|...|.......-..|+
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~rmL~------e~p~~~e~Yv~~~-------~d~~L~~WWgqYlES~Ge 927 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFRMLK------EYPKQIEQYVRRK-------RDESLYSWWGQYLESVGE 927 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHH------hChHHHHHHHHhc-------cchHHHHHHHHHHhcccc
Confidence 5556666777777777765421 1111111111 1122222222221 145566666666666777
Q ss_pred hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChh
Q 006071 318 LNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTG 397 (662)
Q Consensus 318 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 397 (662)
.+.|+.+|....+ |..++...|-.|+.++|-.+-++- -|......+.+.|-..|++.
T Consensus 928 mdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es--------------gd~AAcYhlaR~YEn~g~v~ 984 (1416)
T KOG3617|consen 928 MDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES--------------GDKAACYHLARMYENDGDVV 984 (1416)
T ss_pred hHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc--------------ccHHHHHHHHHHhhhhHHHH
Confidence 7777777766654 455666666677777776666553 23334455666666777777
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 006071 398 KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMI 476 (662)
Q Consensus 398 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 476 (662)
+|..+|.++. ++...|+.|-.. ++++-+.-+..|. +.. | .......|...| +.+.|..++.+.
T Consensus 985 ~Av~FfTrAq--------afsnAIRlcKEn-d~~d~L~nlal~s--~~~-d---~v~aArYyEe~g~~~~~AVmLYHkA- 1048 (1416)
T KOG3617|consen 985 KAVKFFTRAQ--------AFSNAIRLCKEN-DMKDRLANLALMS--GGS-D---LVSAARYYEELGGYAHKAVMLYHKA- 1048 (1416)
T ss_pred HHHHHHHHHH--------HHHHHHHHHHhc-CHHHHHHHHHhhc--Cch-h---HHHHHHHHHHcchhhhHHHHHHHhh-
Confidence 7777776643 345555544332 2222111111111 100 1 111222333333 444444444433
Q ss_pred HcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 006071 477 EDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS 556 (662)
Q Consensus 477 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 556 (662)
|. +...+....+..++ .|+++.. .+.....|+...+.....++...++++|+.++-...+ +..
T Consensus 1049 --Gm------~~kALelAF~tqQf-~aL~lIa--~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~------~~~ 1111 (1416)
T KOG3617|consen 1049 --GM------IGKALELAFRTQQF-SALDLIA--KDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLARE------FSG 1111 (1416)
T ss_pred --cc------hHHHHHHHHhhccc-HHHHHHH--HhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHH------HHH
Confidence 11 11111111111111 1111111 1225556788888888888888899999988765543 111
Q ss_pred HHHHHhccCCHHHHHHHHHHHh-cCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHH
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCL-GRDCIID----LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGL 631 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~-~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 631 (662)
.+..| ...+..-..++.+.+- .++..++ ......+++.+.++|.+.-|.+-|-+.-.+- .-.+++
T Consensus 1112 AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl---------~AMraL 1181 (1416)
T KOG3617|consen 1112 ALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKL---------SAMRAL 1181 (1416)
T ss_pred HHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHH---------HHHHHH
Confidence 22222 2222222222333221 1111222 3455678899999999999988877654331 145677
Q ss_pred HhcCCcchhHHHHH
Q 006071 632 NQEGNTKQADILSR 645 (662)
Q Consensus 632 ~~~g~~~~a~~~~~ 645 (662)
.+.|++++..-++.
T Consensus 1182 LKSGdt~KI~FFAn 1195 (1416)
T KOG3617|consen 1182 LKSGDTQKIRFFAN 1195 (1416)
T ss_pred HhcCCcceEEEEee
Confidence 78888877644433
No 89
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.22 E-value=1.2e-08 Score=99.38 Aligned_cols=245 Identities=15% Similarity=0.132 Sum_probs=152.1
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----C-CCCCh-hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCC
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRL-----S-IPTEA-GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQ 373 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 373 (662)
-..+...+...|...|+++.|..+++...+. | ..|.. ...+.+...|...+++++|..+|++++........
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G- 276 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG- 276 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC-
Confidence 3445555666666667777666666665543 1 12222 23345777888999999999999998776432111
Q ss_pred CCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC-----CCCH---HHHHHHHHHHHhcCChhHHHHHHHHHhhC--
Q 006071 374 STLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG-----VLDP---VAFNNLIRGHSKEGNPDSAFEIVKIMGRR-- 443 (662)
Q Consensus 374 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 443 (662)
...+.-..+++.|..+|.+.|++++|...++.+.+.- ...+ ..++.+...++..+++++|..+++...+.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 1111123456677778888899888888877765432 1122 24566667777788888888877765431
Q ss_pred -CCCC----CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CC--CCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 444 -GVPR----DADAYICLIESYLRKGEPADAKTALDSMIED----GH--SPA-SSLFRSVMESLFEDGRVQTASRVMKSMV 511 (662)
Q Consensus 444 -~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 511 (662)
-+.+ -..+++.|...|...|++++|.++++.++.. +. .+. ...++.+...|.+.+.+++|..+|.+..
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 1111 1356777788888888888888777776632 11 111 3345666667777777777777777654
Q ss_pred Hc----CCC-C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 512 EK----GVK-E-NLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 512 ~~----~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
.. |+. | ...+|..|...|...|++++|+++.+.+.
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 32 222 1 24456777777777777777777766655
No 90
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=6.8e-08 Score=83.70 Aligned_cols=355 Identities=12% Similarity=0.107 Sum_probs=214.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHH-HHH
Q 006071 91 EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNV-MLW 169 (662)
Q Consensus 91 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-ll~ 169 (662)
..-+++.+..+.+..++.+|++++..-.++. +.+....+.+..+|-...++..|-+.++++-.. .|...-|.. -..
T Consensus 10 EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQ 86 (459)
T KOG4340|consen 10 EGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQ 86 (459)
T ss_pred CCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHH
Confidence 3345666666677788888888888777654 236667777777888888888888888888654 344443432 234
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCH
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMING--YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERA 247 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 247 (662)
.+.+.+.+..|+++...|... ++...-..-+.+ ....+++..+..+++.....| +..+.+...-...+.|++
T Consensus 87 SLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqy 160 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQY 160 (459)
T ss_pred HHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccH
Confidence 555778888888888777653 222222222222 234677888888887776433 444444444455678888
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHH----HHHHHHHhcCChHHHHH
Q 006071 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFM----KLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~a~~ 323 (662)
+.|.+-|+...+.+--.....|+..+ ++.+.|+++.|.+...+++++|+.. .+..-. ..+++ ...|+. ..
T Consensus 161 EaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~-HPElgIGm~tegiDv-rsvgNt---~~ 234 (459)
T KOG4340|consen 161 EAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQ-HPELGIGMTTEGIDV-RSVGNT---LV 234 (459)
T ss_pred HHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhc-CCccCccceeccCch-hcccch---HH
Confidence 88888888887654333445666555 4556788888888888888887653 111100 00000 000100 00
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHH
Q 006071 324 VLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFF 403 (662)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 403 (662)
+.. ..-...+|.-...+.+.++++.|.+.+.+|- |......|+.|...+.-. -..+++.....-+
T Consensus 235 lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmP-------PRaE~elDPvTLHN~Al~-n~~~~p~~g~~KL 299 (459)
T KOG4340|consen 235 LHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMP-------PRAEEELDPVTLHNQALM-NMDARPTEGFEKL 299 (459)
T ss_pred HHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCC-------CcccccCCchhhhHHHHh-cccCCccccHHHH
Confidence 000 0011234444555678899999999888872 444455677776554332 1245566677777
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCHHhHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 404 RQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRDADAYICLIESYLRKGEPADAKTALDSM 475 (662)
Q Consensus 404 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 475 (662)
.-+....|..+.||..++-.||+..-++.|-.++.+-..... -.+...|+.+=....-.-.+++|.+-++.+
T Consensus 300 qFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 300 QFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 777777888889999999999999989988888765433211 123344443333223334566666555544
No 91
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.21 E-value=6.9e-07 Score=79.26 Aligned_cols=311 Identities=13% Similarity=0.118 Sum_probs=168.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcC
Q 006071 237 MIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSG 316 (662)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 316 (662)
+...+...|++..|+.-|....+.+ +.+-.++-.-...|...|+...|+.-+.+.++. .|+-..+...-...+.+.|
T Consensus 44 lGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 44 LGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence 3444555566666666666555431 111122222334555566666666666665553 4422333333445556666
Q ss_pred ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCCh
Q 006071 317 HLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQT 396 (662)
Q Consensus 317 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 396 (662)
.++.|..=|+.+++.. |+..+ ...++.+.-..++-. .....+..+...|+.
T Consensus 121 ele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~------------------------~l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 121 ELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW------------------------VLVQQLKSASGSGDC 171 (504)
T ss_pred cHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH------------------------HHHHHHHHHhcCCch
Confidence 6666666666666543 21111 011111100001100 111222334445666
Q ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 397 GKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 397 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
..++.....+++..+.+...+..-..+|...|++..|+.-++...+..-. +..++--+-..+...|+.+.++..+.+.+
T Consensus 172 ~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECL 250 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECL 250 (504)
T ss_pred hhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666555554322 44444445555556666666666666665
Q ss_pred HcCCCCcHHh----HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCCCHHHHHH
Q 006071 477 EDGHSPASSL----FRSV---------MESLFEDGRVQTASRVMKSMVEKGVKENL---DLVAKILEALLMRGHVEEALG 540 (662)
Q Consensus 477 ~~~~~~~~~~----~~~l---------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~ 540 (662)
+. .||... |..+ +....+.++|.++.+..+..++..+.... ..+..+-.|+...|++.+|++
T Consensus 251 Kl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq 328 (504)
T KOG0624|consen 251 KL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ 328 (504)
T ss_pred cc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence 42 344321 1111 11234567788888888887776554222 334556677777888899998
Q ss_pred HHHHHHhCCCCCC-HHHH---HHHHhccCCHHHHHHHHHHHhcCCCCC
Q 006071 541 RIDLMMQSGSVPN-FDSL---LSVLSEKGKTIAAVKLLDFCLGRDCII 584 (662)
Q Consensus 541 ~~~~~~~~~~~p~-~~~~---~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (662)
...++++ +.|+ ...+ ..+|.....+++|+.=|+++.+.+..+
T Consensus 329 qC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn 374 (504)
T KOG0624|consen 329 QCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESN 374 (504)
T ss_pred HHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccc
Confidence 8888887 6777 3333 345555678888888888888775443
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=1.8e-07 Score=88.30 Aligned_cols=437 Identities=11% Similarity=0.022 Sum_probs=252.6
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
++....|+++.|+..|..+...+ |++...|+.-..+|...|++.+|.+=-.+.++..+. -+..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~-w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPD-WAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCc-hhhHHHHhHHHHHhcccH
Confidence 46678999999999999999988 789999999999999999999998877777665443 467899999999999999
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHH---HHHHHHHHhCC---CCcCHHHHHHHHHHHHhc-------
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMA---KRYFNKMLSEG---IEPTRHTYNVMLWGFFLS------- 174 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~------- 174 (662)
++|+.-|.+-.+.. +.+...++.+..++......... -.++..+.... .......|..++..+-+.
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 99999999988864 34556677777766211100000 01111111100 000011122222111100
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh-cCChH----HHHHHHHHHHH-CCCCCCHhhHHHHHHHHHhcCCHH
Q 006071 175 LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNR-FKKMD----EAEKLFAEMKE-KNIEPTVISYTTMIKGYVAVERAD 248 (662)
Q Consensus 175 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~g~~~----~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~ 248 (662)
.+.+......-.+...+. . .+..--..... ..... .......++.+ ....--..-...+.++..+..++.
T Consensus 166 l~d~r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred cccHHHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 000000000000000000 0 00000000000 00000 00000000000 000001122445677777777888
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-c----HHHHHHHHHHHHhcCChHHHHH
Q 006071 249 DALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK-D----NSVFMKLLGVQCKSGHLNAAAD 323 (662)
Q Consensus 249 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~ 323 (662)
.+++-+....... -+..-++....++...|.+..+.......++.|.... + ...+..+...|.+.++++.++.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 8888888777653 3444455666677777877777777776666543210 0 0112223446666788888988
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc-ccHHHHHHHHHhcCChhHHHHH
Q 006071 324 VLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA-SSYNPMIQHLCHNGQTGKAEIF 402 (662)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~ 402 (662)
.|.+.......|+. ..+....+++....+...-.+ |.. .-...-...+.+.|++..|...
T Consensus 320 ~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~----------pe~A~e~r~kGne~Fk~gdy~~Av~~ 380 (539)
T KOG0548|consen 320 YYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYIN----------PEKAEEEREKGNEAFKKGDYPEAVKH 380 (539)
T ss_pred HHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhC----------hhHHHHHHHHHHHHHhccCHHHHHHH
Confidence 88887665433322 122333444544444432111 111 1122225567788999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006071 403 FRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSP 482 (662)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 482 (662)
|.++++..|.|...|....-+|.+.|.+..|+.-.+...+.+ ++....|.-=..++....+++.|.+.|++.++.. |
T Consensus 381 YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d--p 457 (539)
T KOG0548|consen 381 YTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD--P 457 (539)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--c
Confidence 999999989999999999999999999999998888887764 3345666666677777788999999999988654 6
Q ss_pred cHHhHHHHHHHHHh
Q 006071 483 ASSLFRSVMESLFE 496 (662)
Q Consensus 483 ~~~~~~~l~~~~~~ 496 (662)
+..-+..-+.-|..
T Consensus 458 ~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 458 SNAEAIDGYRRCVE 471 (539)
T ss_pred hhHHHHHHHHHHHH
Confidence 65555444444444
No 93
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.20 E-value=2.8e-08 Score=93.01 Aligned_cols=226 Identities=15% Similarity=0.121 Sum_probs=154.1
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCC--CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNH--DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK 104 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (662)
...+...+..+.++..+.+++...+..| .+..|.....++...|++++|...|++..+..+. +...|+.+...+...
T Consensus 33 ~~~~~~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 33 AVPLQPTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQA 111 (296)
T ss_pred ccccCCchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHC
Confidence 3355556778889999988886542222 2456888888889999999999999998887654 688899999999999
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006071 105 GIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFF 184 (662)
Q Consensus 105 g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 184 (662)
|++++|...|+...+.. +.+..+|..+..++...|++++|++.|++..+.. |+..........+...+++++|...+
T Consensus 112 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l 188 (296)
T PRK11189 112 GNFDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENL 188 (296)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999999998754 3456778888888888999999999999988753 33221222222334567889999998
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHC---CC---CCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 185 EDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK---NI---EPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 185 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
....... .++...+ .+.. ...|+...+ +.++.+.+. .+ +....+|..+...+...|++++|...|++..
T Consensus 189 ~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al 263 (296)
T PRK11189 189 KQRYEKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLAL 263 (296)
T ss_pred HHHHhhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7655432 2232222 2222 334555443 344444321 00 1123467778888888888888888888887
Q ss_pred hCC
Q 006071 259 SFD 261 (662)
Q Consensus 259 ~~~ 261 (662)
..+
T Consensus 264 ~~~ 266 (296)
T PRK11189 264 ANN 266 (296)
T ss_pred HhC
Confidence 654
No 94
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=2.5e-07 Score=87.35 Aligned_cols=104 Identities=12% Similarity=0.133 Sum_probs=65.9
Q ss_pred HHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcC-HHhHHHHHHHHHHcCCh
Q 006071 64 EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERS-VKSYDALFKLILRRGRY 142 (662)
Q Consensus 64 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~-~~~~~~l~~~~~~~g~~ 142 (662)
.+.+..|+++.|...|-+.+..++. |...|+.-..+|...|++++|.+--.+.++.. |+ +..|+....++.-.|++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg~~ 86 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLGDY 86 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcccH
Confidence 4455667777777777777666554 66667777777777777777776665555532 33 34666777777777777
Q ss_pred hHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 006071 143 MMAKRYFNKMLSEGIEPTRHTYNVMLWGF 171 (662)
Q Consensus 143 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~~ 171 (662)
++|+.-|.+-++.. +.+...++.+..++
T Consensus 87 ~eA~~ay~~GL~~d-~~n~~L~~gl~~a~ 114 (539)
T KOG0548|consen 87 EEAILAYSEGLEKD-PSNKQLKTGLAQAY 114 (539)
T ss_pred HHHHHHHHHHhhcC-CchHHHHHhHHHhh
Confidence 77777777766642 22444445555444
No 95
>PF13041 PPR_2: PPR repeat family
Probab=99.18 E-value=8.8e-11 Score=75.84 Aligned_cols=49 Identities=43% Similarity=0.911 Sum_probs=24.3
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006071 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC 277 (662)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 277 (662)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444555555555555555555555555555455555555555544443
No 96
>PF13041 PPR_2: PPR repeat family
Probab=99.17 E-value=8.9e-11 Score=75.81 Aligned_cols=49 Identities=49% Similarity=0.815 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006071 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYV 242 (662)
Q Consensus 194 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 242 (662)
||+.+||+++++|++.|++++|.++|++|.+.|++||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555666666666666666666666666666666666666666665554
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=1.3e-06 Score=75.95 Aligned_cols=293 Identities=14% Similarity=0.095 Sum_probs=199.8
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHH-HHHHH
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFE-VLIES 100 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~ 100 (662)
.+..++..|.+..++..|+++.....++. |.+...++.+..+|....++..|..+++++-..- |...-|. .-...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~--P~~~qYrlY~AQS 87 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH--PELEQYRLYQAQS 87 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--hHHHHHHHHHHHH
Confidence 35566666778889999999999998887 7789999999999999999999999999987653 3333333 23456
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH--HHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006071 101 YGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL--ILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLE 178 (662)
Q Consensus 101 ~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 178 (662)
+-+.+.+.+|+++...|... ++...-..-+.+ .-..+++..+..+.++....| +..+.+.......+.|+++
T Consensus 88 LY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE 161 (459)
T KOG4340|consen 88 LYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE 161 (459)
T ss_pred HHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence 66889999999999988752 322222222222 234688888888888875432 3334444444455889999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC-------------CH--------------
Q 006071 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP-------------TV-------------- 231 (662)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------------~~-------------- 231 (662)
.|.+-|+...+-+--.....|+..+ +..+.|+++.|.+...++.++|+.. |+
T Consensus 162 aAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal 240 (459)
T KOG4340|consen 162 AAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL 240 (459)
T ss_pred HHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence 9999999988764443556666544 4556789999999999988876431 11
Q ss_pred -hhHHHHHHHHHhcCCHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q 006071 232 -ISYTTMIKGYVAVERADDALRIFDEMKSF-DVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLL 309 (662)
Q Consensus 232 -~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 309 (662)
..+|.-...+.+.++++.|.+.+-.|.-. ....|++|...+.-. -..+++.....-+.-++.. .|-...+|..++
T Consensus 241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~--nPfP~ETFANlL 317 (459)
T KOG4340|consen 241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQ--NPFPPETFANLL 317 (459)
T ss_pred HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhc--CCCChHHHHHHH
Confidence 12233334456778888888888887422 234567777665432 2234455555555555554 344567888888
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 006071 310 GVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 310 ~~~~~~g~~~~a~~~~~~~ 328 (662)
-.||++.-++.|-+++.+-
T Consensus 318 llyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 318 LLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHhhhHHHhHHHHHHhhC
Confidence 8999998888888887653
No 98
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.10 E-value=6.1e-07 Score=87.81 Aligned_cols=92 Identities=17% Similarity=0.119 Sum_probs=61.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC-CCCH--HhHHHHHHHHHh
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV-PRDA--DAYICLIESYLR 461 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~ 461 (662)
.+...+...|++++|...+++..+..+.++..+..+..++...|++++|..+++....... .|+. ..|..+...+..
T Consensus 119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~ 198 (355)
T cd05804 119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE 198 (355)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence 3444566677777777777777777766666777777777777777777777776665321 1222 334566677777
Q ss_pred cCChHHHHHHHHHHH
Q 006071 462 KGEPADAKTALDSMI 476 (662)
Q Consensus 462 ~~~~~~a~~~~~~~~ 476 (662)
.|++++|..++++..
T Consensus 199 ~G~~~~A~~~~~~~~ 213 (355)
T cd05804 199 RGDYEAALAIYDTHI 213 (355)
T ss_pred CCCHHHHHHHHHHHh
Confidence 777777777777765
No 99
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.09 E-value=6.4e-07 Score=87.65 Aligned_cols=191 Identities=11% Similarity=-0.015 Sum_probs=90.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCC-HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH----h
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHD-RETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG----K 103 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 103 (662)
.+...|+++.+...+....+..+...+ ..........+...|++++|..++++.....+. +...+.. ...+. .
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~ 92 (355)
T cd05804 15 LLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDF 92 (355)
T ss_pred HHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhccc
Confidence 333445555555555555444311111 122223334455666666666666665554322 3333331 11111 1
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRF 183 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 183 (662)
.+....+.+.+..... ..+........+...+...|++++|...+++..+.. +.+...+..+...+...|++++|...
T Consensus 93 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~ 170 (355)
T cd05804 93 SGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAF 170 (355)
T ss_pred ccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHH
Confidence 2333334433333111 111122233344455566666666666666666543 22344555555566666666666666
Q ss_pred HHHHHhCCCC-CCH--HHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 184 FEDMKSRGIS-LDV--VTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 184 ~~~~~~~~~~-~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
++........ ++. ..|..+...+...|++++|..++++..
T Consensus 171 l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 171 MESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 6665543211 121 233455556666666666666666654
No 100
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.06 E-value=7.7e-07 Score=78.96 Aligned_cols=195 Identities=11% Similarity=-0.026 Sum_probs=119.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHH-HHHHHHHHHh
Q 006071 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDM-FEVLIESYGK 103 (662)
Q Consensus 25 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 103 (662)
-+...+...|++..|+..|-.+.+-+ |.+-.++..-..+|...|.-.-|+.=|.++... .||... ...-...+.+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~d--p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK 118 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEGD--PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLK 118 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcCC--chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhh
Confidence 34556777788888888888777655 556666666677777788777777777776654 344322 2222345667
Q ss_pred cCChhHHHHHHHHHHHcCCCcC--HHhHH------------HHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVERS--VKSYD------------ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLW 169 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~--~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~ 169 (662)
+|.++.|..-|+...+.....+ ...+. ..+..+...|+...|+.....+++.. +-|...|..-..
T Consensus 119 ~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rak 197 (504)
T KOG0624|consen 119 QGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAK 197 (504)
T ss_pred cccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHH
Confidence 7888888888888777542111 11111 11222334566777777777666642 235566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006071 170 GFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (662)
Q Consensus 170 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 225 (662)
+|...|++..|+.=+....+.... ++..+--+-..+...|+.+.++...++..+.
T Consensus 198 c~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl 252 (504)
T KOG0624|consen 198 CYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL 252 (504)
T ss_pred HHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc
Confidence 677777777776666665554322 4555555556666667777777666666654
No 101
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=4.8e-08 Score=92.83 Aligned_cols=253 Identities=15% Similarity=0.154 Sum_probs=177.9
Q ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHH
Q 006071 276 LCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDR 355 (662)
Q Consensus 276 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 355 (662)
+.+.|++.+|.-.|+..++. .|.+..+|..|.......++-..|+..+.+..+.. |.+....-.|.-.|...|.-..
T Consensus 295 lm~nG~L~~A~LafEAAVkq--dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQ--DPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHhcCCchHHHHHHHHHHhh--ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 46778888888888888886 67788888888888888888888888888888765 5667777778888888888888
Q ss_pred HHHHHHHHHHhhhhccCCCCCCC----ccccHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCC
Q 006071 356 AIKLLDKLVEKEIILRPQSTLDM----EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGN 429 (662)
Q Consensus 356 a~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 429 (662)
|+..++..+.... .....+ +...-.. ..+..........++|-.+.... ..|+.+...|.-.|--.|+
T Consensus 372 Al~~L~~Wi~~~p----~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 372 ALKMLDKWIRNKP----KYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHhCc----cchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 8888888765431 000000 0000000 01111122334445555555544 3899999999999999999
Q ss_pred hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHHHHHHH
Q 006071 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTASRVMK 508 (662)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 508 (662)
+++|...|+.+.... +-|..+||-|...++...+.++|+..+.+.++ ++|.. .+...+.-+|...|.+++|.+.|=
T Consensus 446 fdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL 522 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLL 522 (579)
T ss_pred HHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence 999999999998864 33778999999999999999999999999985 56763 455566778899999999998888
Q ss_pred HHHHcC---------CCCCHHHHHHHHHHHHhCCCHHHHHH
Q 006071 509 SMVEKG---------VKENLDLVAKILEALLMRGHVEEALG 540 (662)
Q Consensus 509 ~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~ 540 (662)
.++... ..++...|..|=.++.-.++.|-+.+
T Consensus 523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 776531 12234566666666666666554443
No 102
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.06 E-value=3.6e-08 Score=93.62 Aligned_cols=244 Identities=16% Similarity=0.165 Sum_probs=184.6
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHH
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 468 (662)
-+.+.|+..+|.-.|+..++..|.+..+|..|.......++-..|+..++++.+.... +......|.-.|...|.-.+|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 3567899999999999999999999999999999999999999999999999997533 778889999999999999999
Q ss_pred HHHHHHHHHcCCCCcHHhHHHH------H--HHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006071 469 KTALDSMIEDGHSPASSLFRSV------M--ESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEAL 539 (662)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l------~--~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (662)
...++..+...+ .......- . ..+.....+....++|-.+... +..+++.+...|.-.|.-.|++++|+
T Consensus 373 l~~L~~Wi~~~p--~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKP--KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCc--cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 999999876431 11000000 0 1122223345555566555544 54578888899999999999999999
Q ss_pred HHHHHHHhCCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 540 GRIDLMMQSGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 540 ~~~~~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
+.|+..+. .+|+. +.++..++...+.++|+..|.++++..|.--..-| .|+-.|+..|.++||++.|-..+.-
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~Ry-NlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRY-NLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeeh-hhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 99999997 88884 44555666778999999999999998544444545 5899999999999999999886642
Q ss_pred C---------CCCcHhhHHHHHHHHHhcCCcc
Q 006071 616 G---------GVTDWKSSDKLIAGLNQEGNTK 638 (662)
Q Consensus 616 ~---------~~~~~~~~~~l~~~~~~~g~~~ 638 (662)
. +..+...|..|-.++...++.+
T Consensus 528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D 559 (579)
T KOG1125|consen 528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSD 559 (579)
T ss_pred hhcccccccCCcchHHHHHHHHHHHHHcCCch
Confidence 1 1112345555666666666666
No 103
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=99.01 E-value=2.6e-05 Score=74.05 Aligned_cols=430 Identities=11% Similarity=0.102 Sum_probs=228.1
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006071 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (662)
+-|..+|..||+-+... ..++++..++++... ++-....|...+..-...++++..+.+|.+.+..- .+...|...
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 34778888888766544 888888888888765 44456778888888888888888888888877652 355566655
Q ss_pred HHHHHhc-CCHHH----HHHHHHHHh-hCCCCCCH-HHHHHHHHHH---------HhCCCHHHHHHHHHHHHHcCCCCCc
Q 006071 238 IKGYVAV-ERADD----ALRIFDEMK-SFDVKPNA-VTYTALLPGL---------CDAGKMVEVQKVLREMVERYIPPKD 301 (662)
Q Consensus 238 ~~~~~~~-~~~~~----a~~~~~~~~-~~~~~~~~-~~~~~ll~~~---------~~~g~~~~a~~~~~~~~~~~~~~~~ 301 (662)
+.--.+. ++... ..+.|+-.. +.|+.+-. ..|+..+..+ ....+++...+++++++.. |
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~t---P-- 167 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVT---P-- 167 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcC---c--
Confidence 5433222 22222 222333322 23333222 2333333321 2233445566666666553 2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccc
Q 006071 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEAS 381 (662)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (662)
.+.+++-+.=|....+ ..|..+-..++. -+...+..|.++++++..............|...
T Consensus 168 -------------m~nlEkLW~DY~~fE~---~IN~~tarK~i~--e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~ 229 (656)
T KOG1914|consen 168 -------------MHNLEKLWKDYEAFEQ---EINIITARKFIG--ERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKG 229 (656)
T ss_pred -------------cccHHHHHHHHHHHHH---HHHHHHHHHHHH--hhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCC
Confidence 1112222222222111 111222121211 1233456666666665432211111111111111
Q ss_pred c---------HHHHHHHHHhcCC--------hhHHHHHHHHHHhcCCCCHHHHHHHHH-------HHHhcCC-------h
Q 006071 382 S---------YNPMIQHLCHNGQ--------TGKAEIFFRQLMKKGVLDPVAFNNLIR-------GHSKEGN-------P 430 (662)
Q Consensus 382 ~---------~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~l~~-------~~~~~~~-------~ 430 (662)
| |..+|.--..++- .....-.+++.+..-...+.+|--... .+...|+ .
T Consensus 230 T~~e~~qv~~W~n~I~wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t 309 (656)
T KOG1914|consen 230 TKDEIQQVELWKNWIKWEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLT 309 (656)
T ss_pred ChHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhH
Confidence 1 2222221111110 011222333333322333333332222 2223333 3
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC---ChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKG---EPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVM 507 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 507 (662)
+++..+++.....-..-+..+|..+...--..- ..+.....++++......--..+|..++....+..-+..|..+|
T Consensus 310 ~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF 389 (656)
T KOG1914|consen 310 DEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIF 389 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHH
Confidence 455555555544222223444444433221111 24555666666654322222346777777777788889999999
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCC
Q 006071 508 KSMVEKGVKE-NLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCII 584 (662)
Q Consensus 508 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (662)
.++.+.+..+ .....++++.-+ ..++..-|..+|+--+. .|..|.+ ...++.|...|+-..|+.+|++++....++
T Consensus 390 ~kaR~~~r~~hhVfVa~A~mEy~-cskD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~ 468 (656)
T KOG1914|consen 390 KKAREDKRTRHHVFVAAALMEYY-CSKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSA 468 (656)
T ss_pred HHHhhccCCcchhhHHHHHHHHH-hcCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCCh
Confidence 9998886666 455566666644 45677888888885544 6666664 356777778888888999999998874333
Q ss_pred --ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 585 --DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 585 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
...+|..+++-=..-|+.+.++++-++....
T Consensus 469 ~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 469 DKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred hhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3678888888778889999999888886654
No 104
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.00 E-value=9.9e-05 Score=82.31 Aligned_cols=377 Identities=10% Similarity=-0.045 Sum_probs=225.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 006071 167 MLWGFFLSLKLETAIRFFEDMKSRGISLD-VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE 245 (662)
Q Consensus 167 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 245 (662)
....+...|++.++.......... +. ..............|+++.+...++.+.......+..........+...|
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g 423 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH 423 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence 344455667776666544332211 00 01111122334556788877777766532111112223344455666789
Q ss_pred CHHHHHHHHHHHhhCC--C----CCCHH--HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcH----HHHHHHHHHHH
Q 006071 246 RADDALRIFDEMKSFD--V----KPNAV--TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDN----SVFMKLLGVQC 313 (662)
Q Consensus 246 ~~~~a~~~~~~~~~~~--~----~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~ 313 (662)
+++++..++......- . .+... ....+...+...|+++.|...++...... ...+. .....+...+.
T Consensus 424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~ 502 (903)
T PRK04841 424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHH 502 (903)
T ss_pred CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHH
Confidence 9999999888775421 0 11111 12223345567899999999999987641 11122 23455666778
Q ss_pred hcCChHHHHHHHHHHHhCCC---CC--ChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHH
Q 006071 314 KSGHLNAAADVLKAMIRLSI---PT--EAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQ 388 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 388 (662)
..|+++.|...+.+.....- .+ ...+...+...+...|+++.|...+++..+....... .........+..+..
T Consensus 503 ~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~la~ 581 (903)
T PRK04841 503 CKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL-EQLPMHEFLLRIRAQ 581 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc-ccccHHHHHHHHHHH
Confidence 89999999999988764311 11 1234455667788899999999999988765321100 000011223344555
Q ss_pred HHHhcCChhHHHHHHHHHHhcC---CC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHH--hH--HHHHH
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKG---VL--DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDAD--AY--ICLIE 457 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~--~~--~~l~~ 457 (662)
.+...|++++|...+....... .+ ....+..+...+...|+++.|...+..+... ....... .. ...+.
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~ 661 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI 661 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence 6677899999999998876542 11 2334555677788899999999998887542 1111111 10 11224
Q ss_pred HHHhcCChHHHHHHHHHHHHcCCCCcH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHH
Q 006071 458 SYLRKGEPADAKTALDSMIEDGHSPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEAL 529 (662)
Q Consensus 458 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~ 529 (662)
.+...|+.+.|...+............ ..+..+..++...|++++|...++++... +... ...+...+..++
T Consensus 662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~ 741 (903)
T PRK04841 662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY 741 (903)
T ss_pred HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 455678999999888775432111111 11345566788899999999999988764 2222 123456677888
Q ss_pred HhCCCHHHHHHHHHHHHhC
Q 006071 530 LMRGHVEEALGRIDLMMQS 548 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~ 548 (662)
...|+.++|...+.+.++.
T Consensus 742 ~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 742 WQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988863
No 105
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=3.5e-08 Score=90.71 Aligned_cols=148 Identities=18% Similarity=0.192 Sum_probs=79.2
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH----hcCCh
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL----RKGEP 465 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~ 465 (662)
+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.+ .| .+...++.++. -.+.+
T Consensus 112 ~~~~~~~~~AL~~l~~~-----~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~ 183 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG-----GSLELLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKY 183 (290)
T ss_dssp HCCCCHHHHHHCCCTTT-----TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCC
T ss_pred HHHcCCHHHHHHHHHcc-----CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhH
Confidence 33455666555555432 344555556666666667777776666666542 22 22222333222 22356
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHH
Q 006071 466 ADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV-EEALGRIDL 544 (662)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 544 (662)
.+|..+|+++.+ .+.++..+.+.+..++...|++++|.+++++....++. ++.++..++.+....|+. +.+.+++.+
T Consensus 184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 667777777654 34455666666666666677777777776666555444 455555566666666655 445556655
Q ss_pred HHh
Q 006071 545 MMQ 547 (662)
Q Consensus 545 ~~~ 547 (662)
+..
T Consensus 262 L~~ 264 (290)
T PF04733_consen 262 LKQ 264 (290)
T ss_dssp CHH
T ss_pred HHH
Confidence 554
No 106
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.97 E-value=2.4e-08 Score=91.79 Aligned_cols=248 Identities=15% Similarity=0.139 Sum_probs=122.1
Q ss_pred HHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHH
Q 006071 66 LGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMA 145 (662)
Q Consensus 66 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A 145 (662)
+.-.|++..++.-.+ ........+......+.+++...|+++.+.. ++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344556666554444 2221111123334444555556665554332 222211 34444443333333222333444
Q ss_pred HHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 146 KRYFNKMLSEGIEPTRHTY-NVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
+.-+++....+..++..++ ......+...|++++|++++... .+.......+.++.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444433322222122122 22223344557777776666432 2556666666777777777777777777765
Q ss_pred CCCCCCHhhHHHHHHHHH----hcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Q 006071 225 KNIEPTVISYTTMIKGYV----AVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK 300 (662)
Q Consensus 225 ~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 300 (662)
.+ .| .+...++.++. ..+.+.+|..+|+++.+. ..+++.+.+.+..++...|++++|.+++.+.... .|.
T Consensus 160 ~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~--~~~ 233 (290)
T PF04733_consen 160 ID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK--DPN 233 (290)
T ss_dssp CS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC---CC
T ss_pred cC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccC
Confidence 42 22 22233333322 233567777777776543 3566666777777777777777777777776543 455
Q ss_pred cHHHHHHHHHHHHhcCCh-HHHHHHHHHHHh
Q 006071 301 DNSVFMKLLGVQCKSGHL-NAAADVLKAMIR 330 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 330 (662)
++.+...++.+....|+. +.+.+.+.++..
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666665 555566666554
No 107
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.97 E-value=3.3e-06 Score=93.97 Aligned_cols=339 Identities=10% Similarity=0.023 Sum_probs=210.8
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC------CC--hhhHHHHHHH
Q 006071 275 GLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIP------TE--AGHYGILIEN 346 (662)
Q Consensus 275 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~ 346 (662)
.....|+++.+..++..+..... ..++.........+...|+++++...+......--. +. ......+...
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~-~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVL-LENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHH-hcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 34456777777777665422111 112333344555666789999999988877543111 11 1122223345
Q ss_pred HHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCC--HHHHHHH
Q 006071 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLD--PVAFNNL 420 (662)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~--~~~~~~l 420 (662)
+...|+++.|...++...+.. +...........+.+...+...|+++.|...++...... .+. ..+...+
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~----~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 462 AINDGDPEEAERLAELALAEL----PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 667899999999999886531 111000011234455566778999999999998887543 111 2345566
Q ss_pred HHHHHhcCChhHHHHHHHHHhh----CCCC--C-CHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCCc--HHhHHH
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGR----RGVP--R-DADAYICLIESYLRKGEPADAKTALDSMIEDG--HSPA--SSLFRS 489 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~ 489 (662)
...+...|++++|...+++... .+.. + ....+..+...+...|++++|...+.+..... ..+. ...+..
T Consensus 538 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 617 (903)
T PRK04841 538 SEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAM 617 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHH
Confidence 7788889999999999887654 2211 1 22344556667778899999999998876421 1121 233444
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHH--H--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC------HHHH
Q 006071 490 VMESLFEDGRVQTASRVMKSMVEKG--VKENLDL--V--AKILEALLMRGHVEEALGRIDLMMQSGSVPN------FDSL 557 (662)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~--~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~------~~~~ 557 (662)
+...+...|+++.|...+..+.... ....... . ...+..+...|+.+.|.+.+........... ...+
T Consensus 618 la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 697 (903)
T PRK04841 618 LAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNI 697 (903)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHH
Confidence 5556778999999999998886531 1111111 0 1122444568899999988776554211111 1234
Q ss_pred HHHHhccCCHHHHHHHHHHHhcCC----CCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 558 LSVLSEKGKTIAAVKLLDFCLGRD----CIID-LASYEKVLDALLAAGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 618 (662)
..++...|+.++|..++++++... .... ...+..++.++.+.|+.++|.+.+.+.+.....
T Consensus 698 a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 698 ARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 556678899999999999887642 1111 234567888999999999999999998876543
No 108
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.85 E-value=3.1e-06 Score=83.11 Aligned_cols=215 Identities=17% Similarity=0.160 Sum_probs=116.5
Q ss_pred hhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHH
Q 006071 338 GHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAF 417 (662)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 417 (662)
..-..+...+...|-...|..+|++.. .|..++.+|...|+..+|..+..+..+ .+|++..|
T Consensus 399 q~q~~laell~slGitksAl~I~Erle-----------------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~ly 460 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE-----------------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLY 460 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH-----------------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhH
Confidence 334456666777777777777777652 466677777777777777777776666 56666667
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (662)
..+++......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+.+ +....+|..+..+..+.
T Consensus 461 c~LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALql 532 (777)
T KOG1128|consen 461 CLLGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQL 532 (777)
T ss_pred HHhhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHH
Confidence 66666655555555665555443221 11111111223455555555555544322 12334455555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHhccCCHHHHHHHHH
Q 006071 498 GRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDSLLSVLSEKGKTIAAVKLLD 575 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~g~~~~A~~~~~ 575 (662)
++++.|.+.|...+...+. +...|+.+..+|.+.|+-.+|...+++..+.+..|- +.+.+....+-|.+++|++.+.
T Consensus 533 ek~q~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 533 EKEQAAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred hhhHHHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 5555555555555544333 445555555555555555555555555555433322 2233334445555555555555
Q ss_pred HHhc
Q 006071 576 FCLG 579 (662)
Q Consensus 576 ~~~~ 579 (662)
+.++
T Consensus 612 rll~ 615 (777)
T KOG1128|consen 612 RLLD 615 (777)
T ss_pred HHHH
Confidence 4443
No 109
>PLN02789 farnesyltranstransferase
Probab=98.84 E-value=5.2e-06 Score=77.59 Aligned_cols=204 Identities=8% Similarity=-0.002 Sum_probs=145.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC-ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCh--
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG-NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP-- 465 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-- 465 (662)
.+...+..++|+.+..++++..|.+..+|+....++...| ++++++..++.+.+.+.+ +..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 3455678899999999999999888889988888888887 679999999998886544 666777666666666653
Q ss_pred HHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---CC----HHHH
Q 006071 466 ADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---GH----VEEA 538 (662)
Q Consensus 466 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~----~~~A 538 (662)
++++.+++++++.. +-+..+|.....++...|+++++++.++++++.++. |...|+....++.+. |. .+++
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 67788888888644 346778888888888889999999999999998877 666777666665554 22 2466
Q ss_pred HHHHHHHHhCCCCCC----HHHHHHHHhc----cCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh
Q 006071 539 LGRIDLMMQSGSVPN----FDSLLSVLSE----KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (662)
Q Consensus 539 ~~~~~~~~~~~~~p~----~~~~~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (662)
+++.++++. ..|+ +..+..++.. .++..+|.+.+..++... ..++.....|++.|..
T Consensus 203 l~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 777766655 3444 3444555544 234566777777766643 2334445567777765
No 110
>PLN02789 farnesyltranstransferase
Probab=98.83 E-value=3.9e-06 Score=78.41 Aligned_cols=211 Identities=11% Similarity=0.086 Sum_probs=135.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhc
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVG-KLNHARCILLDMPKKGVQWDEDMFEVLIESYGKK 104 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 104 (662)
+..++...+++++|+..++.+++.+ |.+..+|.....++...| ++++++..++++....++ +..+|+.....+.+.
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 3345566778888888888888876 677778887777777777 568888888888776554 566677666556566
Q ss_pred CCh--hHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc---CCH--
Q 006071 105 GIV--QESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLS---LKL-- 177 (662)
Q Consensus 105 g~~--~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---~~~-- 177 (662)
|+. +++...++.+.+.. +.+..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |..
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~ 197 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEA 197 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccc
Confidence 653 56777777777654 456777887777777788888888888888776543 555666555444333 222
Q ss_pred --HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc----CChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006071 178 --ETAIRFFEDMKSRGISLDVVTYNTMINGYNRF----KKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (662)
Q Consensus 178 --~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (662)
++.......+....+ -|...|+.+...+... +...+|...+.+....+ +.+......|+..|+.
T Consensus 198 ~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 198 MRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred cHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 345555555555432 2566666666665552 23344666665554432 2344555556665553
No 111
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.82 E-value=0.00023 Score=72.14 Aligned_cols=224 Identities=13% Similarity=0.081 Sum_probs=156.4
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
..+++..|++....+++++ |....+-..-.-.+.+.|..++|..+++.....+.. |..+...+-..|...|+.++|.
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~ 97 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV 97 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence 4678999999999999987 444433333344467999999999999987766555 8889999999999999999999
Q ss_pred HHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-C---------HHHHH
Q 006071 112 KIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSL-K---------LETAI 181 (662)
Q Consensus 112 ~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-~---------~~~a~ 181 (662)
.+|++.... -|+......+..+|.+.+.+.+-.++--++.+. .+-+...|=++++.....- . ..-|.
T Consensus 98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~ 174 (932)
T KOG2053|consen 98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAE 174 (932)
T ss_pred HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence 999999875 477777888888999988887766655555543 4445666656666554331 1 23355
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHhhcCChHHHHHHHHH-HHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006071 182 RFFEDMKSRG-ISLDVVTYNTMINGYNRFKKMDEAEKLFAE-MKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKS 259 (662)
Q Consensus 182 ~~~~~~~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (662)
..++.+.+.+ .--+..-....+..+...|++++|.+++.. ..+.-.+.+...-+--+..+...+++.+..++-.++..
T Consensus 175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~ 254 (932)
T KOG2053|consen 175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE 254 (932)
T ss_pred HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 5666666553 222223333344555677889999998843 33332233444445667778888899988888888887
Q ss_pred CC
Q 006071 260 FD 261 (662)
Q Consensus 260 ~~ 261 (662)
.|
T Consensus 255 k~ 256 (932)
T KOG2053|consen 255 KG 256 (932)
T ss_pred hC
Confidence 65
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.82 E-value=4.2e-06 Score=87.98 Aligned_cols=236 Identities=11% Similarity=0.086 Sum_probs=151.2
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006071 42 FFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW-----DEDMFEVLIESYGKKGIVQESVKIFDI 116 (662)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 116 (662)
-|+.....+ |.+...|-..+......++.+.|+.++++.... +.+ -..+|.+++..-..-|.-+...++|++
T Consensus 1446 Dferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeR 1522 (1710)
T KOG1070|consen 1446 DFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFER 1522 (1710)
T ss_pred HHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHH
Confidence 344444444 667777877787778888888888888776653 111 124666666666666777777777877
Q ss_pred HHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C
Q 006071 117 MKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISL-D 195 (662)
Q Consensus 117 ~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~ 195 (662)
+.+.. ..-..|..|...|.+.+.+++|.++++.|.+. +......|...+..+.+.++-+.|..++.++.+.=+.- .
T Consensus 1523 Acqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH 1599 (1710)
T KOG1070|consen 1523 ACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH 1599 (1710)
T ss_pred HHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh
Confidence 77632 23345667777777778888888888877665 33456677777777777777777777777777651110 1
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHH
Q 006071 196 VVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA--VTYTALL 273 (662)
Q Consensus 196 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll 273 (662)
.....-.+..-.+.|+.+++..+|+..... .|.-...|+..+..-.+.|+.+.+..+|+++...++.|-. ..|...+
T Consensus 1600 v~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwL 1678 (1710)
T KOG1070|consen 1600 VEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWL 1678 (1710)
T ss_pred HHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHH
Confidence 233334445556677777777777777654 2345667777777777777777777777777776655432 2344444
Q ss_pred HHHHhCCCHHH
Q 006071 274 PGLCDAGKMVE 284 (662)
Q Consensus 274 ~~~~~~g~~~~ 284 (662)
..--..|+-..
T Consensus 1679 eyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1679 EYEKSHGDEKN 1689 (1710)
T ss_pred HHHHhcCchhh
Confidence 43334444333
No 113
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.80 E-value=0.00016 Score=68.88 Aligned_cols=130 Identities=9% Similarity=0.145 Sum_probs=83.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
+|...+....+..-...|..+|.++.+.. ..+..+.++++..+|. ++..-|..+|+.-.+. +..++.--...+..+
T Consensus 368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL 445 (656)
T KOG1914|consen 368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFL 445 (656)
T ss_pred ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHH
Confidence 56666666666667777777777777666 2355566666665553 5667777777764443 223444445666666
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
...++-..+..+|++.+..++.|+ ...|..+++--..-|+...+.++-+++...
T Consensus 446 ~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 446 SHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 777777777777777776655544 356777777666777777777777666544
No 114
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.78 E-value=3.8e-06 Score=82.57 Aligned_cols=214 Identities=12% Similarity=0.154 Sum_probs=112.8
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcC
Q 006071 271 ALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKA 350 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 350 (662)
.+...+...|-...|..+++++ ..|...+.+|...|+..+|..+..+..+. +|++..|..+.+.....
T Consensus 403 ~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~ 470 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDP 470 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccCh
Confidence 3444455555555555555543 23444555566666666665555555542 45555555555555555
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCCh
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNP 430 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 430 (662)
.-+++|.++.+....+ .-..+.......+++.++...|+...+..+....+|-.+..+..+.+++
T Consensus 471 s~yEkawElsn~~sar---------------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~ 535 (777)
T KOG1128|consen 471 SLYEKAWELSNYISAR---------------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE 535 (777)
T ss_pred HHHHHHHHHhhhhhHH---------------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh
Confidence 5555555555544211 0111111122345566666666666655555556666666666666666
Q ss_pred hHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 431 DSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSM 510 (662)
Q Consensus 431 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 510 (662)
+.|.+.|....... +-+...||.+-.+|.+.++-.+|...+++..+.+ .-+...|...+....+.|.+++|++.+.++
T Consensus 536 q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 536 QAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 66666665555532 2234556666666666666666666666665544 333344444444555556666666666655
Q ss_pred HHc
Q 006071 511 VEK 513 (662)
Q Consensus 511 ~~~ 513 (662)
...
T Consensus 614 l~~ 616 (777)
T KOG1128|consen 614 LDL 616 (777)
T ss_pred HHh
Confidence 443
No 115
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.77 E-value=7.1e-06 Score=85.57 Aligned_cols=220 Identities=12% Similarity=0.154 Sum_probs=126.0
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 006071 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILI 344 (662)
Q Consensus 265 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 344 (662)
+...+..++..+...+++++|.++.+...+. .|.....+..++..+.+.++...+..+ . ++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL--N---------------LI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--h---------------hh
Confidence 3455666666666777777777777755553 454555555555555555554444333 1 22
Q ss_pred HHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Q 006071 345 ENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGH 424 (662)
Q Consensus 345 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 424 (662)
.......++.....++..+.+.+ -+...+..+..+|.+.|+.+++..+++++.+..+.|+.+.|.+...|
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~~----------~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ 160 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLYG----------ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSY 160 (906)
T ss_pred hhcccccchhHHHHHHHHHHhhh----------hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 22223333333333333332211 12235566677777777777777777777777777777777777777
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HhHHHHHHHHHhcCCHHHH
Q 006071 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRSVMESLFEDGRVQTA 503 (662)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a 503 (662)
+.. ++++|.+++.++... +...+++..+.++|.++.... |+. ..+..
T Consensus 161 ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~-------------- 208 (906)
T PRK14720 161 EEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLR-------------- 208 (906)
T ss_pred HHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHH--------------
Confidence 777 777777777666553 455566777777777776532 222 22222
Q ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 504 SRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 504 ~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+.+.+... +..--..++..+...|...++|++++.+++.+++
T Consensus 209 --i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 209 --IERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE 251 (906)
T ss_pred --HHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence 22222222 2222344555566667777778888888888877
No 116
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.77 E-value=1.5e-06 Score=79.15 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=34.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA---DAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
..+..+..++..+...|++++|...++.+...... +. ..+..+..++...|++++|...++++.+
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~ 98 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIR 98 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 34445555555555566666666666555543211 11 3444555555555666666666665554
No 117
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.75 E-value=9.4e-06 Score=85.50 Aligned_cols=206 Identities=12% Similarity=0.133 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 006071 265 NAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPK----DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHY 340 (662)
Q Consensus 265 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 340 (662)
+...|...|......++.++|.++.++++.. +.+. -..+|.++++.-..-|.-+...++|+++.+. ......|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3455666666666667777777777666654 1111 1235556666555666666666666666653 2233445
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC--CHHHHH
Q 006071 341 GILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL--DPVAFN 418 (662)
Q Consensus 341 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~ 418 (662)
..|...|.+.+.+++|.++++.|+++.. .....|...+..+.++++-+.|..++.++++.-|. ......
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~---------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~Is 1604 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG---------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFIS 1604 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc---------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHH
Confidence 6666666666666666666666665431 12345666666666666666666666666655433 444555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006071 419 NLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA 483 (662)
Q Consensus 419 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 483 (662)
..++.-.+.|+.+++..+|+...... |-....|+.+++.-.++|+.+.+..+|++.+..++.|-
T Consensus 1605 kfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1605 KFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 55555666666666666666665542 22456666666666666666666666666666555543
No 118
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.74 E-value=2.3e-06 Score=77.98 Aligned_cols=186 Identities=11% Similarity=0.024 Sum_probs=123.3
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH--H
Q 006071 447 RDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL--D 520 (662)
Q Consensus 447 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 520 (662)
.....+..++..+...|++++|...++++.... |+ ...+..+..++...|++++|...++++++..+.... .
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHH
Confidence 456777888888999999999999999988643 33 235667778889999999999999999887554222 2
Q ss_pred HHHHHHHHHHhC--------CCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHH
Q 006071 521 LVAKILEALLMR--------GHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKV 592 (662)
Q Consensus 521 ~~~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 592 (662)
.+..+..++... |++++|++.++++.. ..|+......++...+..... . ......+
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~a~~~~~~~~~~---~-----------~~~~~~~ 172 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIR--RYPNSEYAPDAKKRMDYLRNR---L-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH--HCCCChhHHHHHHHHHHHHHH---H-----------HHHHHHH
Confidence 455566666654 678888888888886 334322111111111111110 0 0111256
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC--CcHhhHHHHHHHHHhcCCcchhHHHHHHhhhh
Q 006071 593 LDALLAAGKTLNAYSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADILSRMIRGE 650 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 650 (662)
+..+.+.|++.+|+..+++.+..... .....+..++.++.+.|++++|....+.+.+.
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 77788888888888888888776432 23456677888888888888887666666543
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=3.7e-06 Score=72.41 Aligned_cols=164 Identities=15% Similarity=0.119 Sum_probs=89.8
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
|.+..+ ......+...|+-+....+........ +.+.......+....+.|++..|...|.+..... ++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHH
Confidence 334444 455555555565555555555543322 2244455555666666666666666666665533 4555666666
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKM 212 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 212 (662)
.-+|.+.|+++.|..-|.+..+.- .-++..++.+.-.+.-.|+++.|..++......+.. |..+-..+..+....|++
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDF 218 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCCh
Confidence 666666666666666666665541 223344445555555556666666666665554222 455555555555666666
Q ss_pred HHHHHHHHH
Q 006071 213 DEAEKLFAE 221 (662)
Q Consensus 213 ~~a~~~~~~ 221 (662)
+.|.++...
T Consensus 219 ~~A~~i~~~ 227 (257)
T COG5010 219 REAEDIAVQ 227 (257)
T ss_pred HHHHhhccc
Confidence 666655444
No 120
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.72 E-value=5e-06 Score=71.64 Aligned_cols=161 Identities=17% Similarity=0.178 Sum_probs=80.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHH
Q 006071 411 VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSV 490 (662)
Q Consensus 411 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 490 (662)
|.+..+ ..+-..+...|+-+....+....... .+.|......++....+.|++..|...+.+... .-++|...|+.+
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~l 140 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLL 140 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHH
Confidence 334444 44444455555555555554443322 122444444455555555666666666655554 234455555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHhccCCHH
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN--FDSLLSVLSEKGKTI 568 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~~~~~~g~~~ 568 (662)
..+|.+.|+++.|..-|.+..+..+. ++..++.+...|.-.|+.+.|..++......+..+. ...+.......|++.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChH
Confidence 55556666666666555555555333 333445555555555555555555555544332222 123444444555555
Q ss_pred HHHHHHH
Q 006071 569 AAVKLLD 575 (662)
Q Consensus 569 ~A~~~~~ 575 (662)
+|..+..
T Consensus 220 ~A~~i~~ 226 (257)
T COG5010 220 EAEDIAV 226 (257)
T ss_pred HHHhhcc
Confidence 5555544
No 121
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.69 E-value=6.4e-06 Score=85.89 Aligned_cols=238 Identities=14% Similarity=0.066 Sum_probs=147.3
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIES 458 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 458 (662)
+...+..++..+...+++++|.++.+...+..|.....|-.++..+...++.+.+..+ .+. ..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l---------------~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI---------------DS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh---------------hh
Confidence 4456788889998999999999999988888877777777777777777776666555 222 22
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
.....++.-...+.+.+...+ -+...+..+..+|.+.|+.++|..+|+++++.++. |+...+.++..|... +.++|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence 223333333333333443322 23446667777777888888888888888877755 677777788777777 88888
Q ss_pred HHHHHHHHhCCC---CCC-HHHHHHHHhc--cCCHHHHHHHHHHHhcC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 539 LGRIDLMMQSGS---VPN-FDSLLSVLSE--KGKTIAAVKLLDFCLGR-DCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 539 ~~~~~~~~~~~~---~p~-~~~~~~~~~~--~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
++++.+.+..-+ .++ ...+..-++. .-+++.=.++.++.... +..--...+..+...|-..+++++++++|+.
T Consensus 169 ~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~ 248 (906)
T PRK14720 169 ITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKK 248 (906)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 887777665211 111 1111111111 22334444444433333 1111233444555666677889999999999
Q ss_pred HHHcCCCCcHhhHHHHHHHHHhcCCcchh
Q 006071 612 IMEKGGVTDWKSSDKLIAGLNQEGNTKQA 640 (662)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 640 (662)
+++.... +..+...++.||+ +++.+-
T Consensus 249 iL~~~~~-n~~a~~~l~~~y~--~kY~~~ 274 (906)
T PRK14720 249 ILEHDNK-NNKAREELIRFYK--EKYKDH 274 (906)
T ss_pred HHhcCCc-chhhHHHHHHHHH--HHccCc
Confidence 9987654 4444566888877 444443
No 122
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=1.9e-05 Score=68.03 Aligned_cols=249 Identities=12% Similarity=0.120 Sum_probs=136.4
Q ss_pred HHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChh
Q 006071 64 EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYM 143 (662)
Q Consensus 64 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~ 143 (662)
+-+.-.|++..++..-+...... -+...-..+.++|...|++.....-...-. .|.......+...+..-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~----~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGK----ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccccccc----CChHHHHHHHHHHhhCcchhH
Confidence 34445566666665555443321 233444445566666666554433222221 233333333333333333333
Q ss_pred HHH-HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 006071 144 MAK-RYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (662)
Q Consensus 144 ~A~-~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 222 (662)
.-+ ++.+.+.......+......-...|++.|++++|.+...... +......=...+.+..+++-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 333444333222232223333345667777777777765521 3344444445556677777777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Q 006071 223 KEKNIEPTVISYTTMIKGYVA----VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIP 298 (662)
Q Consensus 223 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 298 (662)
.+-. +..+.+.|..++.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++..+.+ .
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d 237 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--D 237 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--c
Confidence 7642 55566666665543 34577777788887653 3677777777777777888888888888887776 4
Q ss_pred CCcHHHHHHHHHHHHhcCChHH-HHHHHHHHHh
Q 006071 299 PKDNSVFMKLLGVQCKSGHLNA-AADVLKAMIR 330 (662)
Q Consensus 299 ~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~ 330 (662)
++++.+...++.+....|.... ..+.+.++..
T Consensus 238 ~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 238 AKDPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 5566666666665555554433 3344444443
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.66 E-value=4e-06 Score=86.64 Aligned_cols=198 Identities=14% Similarity=0.088 Sum_probs=133.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHH-HHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHH
Q 006071 413 DPVAFNNLIRGHSKEGNPDSAF-EIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM 491 (662)
Q Consensus 413 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 491 (662)
++...+.+=.+.+..|..++|- +++.++.+ ++..........+++.-+..... ....+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 4444444445555566666553 33333322 22222333333333333333333 3445577788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCH
Q 006071 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKT 567 (662)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~ 567 (662)
......|.+++|..+++.+.+..+. +......++.++.+.+++++|+..+++.+. ..|+. ..+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcch
Confidence 8888999999999999999887666 566677788889999999999999988887 55553 2355667788999
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLI 628 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 628 (662)
++|..+|++++..+ +.+...+..++..|...|+.++|...|++..+.... -.+.|+.++
T Consensus 171 ~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~-~~~~~~~~~ 229 (694)
T PRK15179 171 EQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD-GARKLTRRL 229 (694)
T ss_pred HHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc-chHHHHHHH
Confidence 99999999998844 344666777888999999999999999998876442 224444443
No 124
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=6.3e-06 Score=71.57 Aligned_cols=149 Identities=15% Similarity=0.175 Sum_probs=107.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 006071 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (662)
+-.|...|+++.+....+.+.. |. ..+...++.+++...++..++.++. +...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3457777887776444432221 11 0122366778888888888887766 788888899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCH----HHHHHHH-hccCC--HHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 006071 536 EEALGRIDLMMQSGSVPNF----DSLLSVL-SEKGK--TIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSI 608 (662)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~~----~~~~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 608 (662)
++|+..+++... ..|+. ..++.++ ...|+ .++|.++++++++.++. +...+..++..+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHH
Confidence 999999998887 44542 2344543 45566 58999999999998754 455666789999999999999999
Q ss_pred HHHHHHcCCCCc
Q 006071 609 LFKIMEKGGVTD 620 (662)
Q Consensus 609 ~~~~~~~~~~~~ 620 (662)
++++++...+.+
T Consensus 167 ~~~aL~l~~~~~ 178 (198)
T PRK10370 167 WQKVLDLNSPRV 178 (198)
T ss_pred HHHHHhhCCCCc
Confidence 999988765433
No 125
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=5.9e-05 Score=65.11 Aligned_cols=149 Identities=16% Similarity=0.144 Sum_probs=83.7
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----cCC
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGE 464 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 464 (662)
.|+..+++++|+...... .+......=+..+.+..+++-|...++.|.+.. +..|.+.|..++.+ .+.
T Consensus 117 i~~~~~~~deAl~~~~~~-----~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek 188 (299)
T KOG3081|consen 117 IYMHDGDFDEALKALHLG-----ENLEAAALNVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEK 188 (299)
T ss_pred HhhcCCChHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchh
Confidence 455566666666555441 122222223344455566667777777776632 44555555555543 245
Q ss_pred hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH-HHHH
Q 006071 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL-GRID 543 (662)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~ 543 (662)
..+|.-+|++|-+ ...|+..+.+....++...|++++|..+++.++..... ++.+...++.+-...|...++. +.+.
T Consensus 189 ~qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 189 IQDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 6667777777764 24566666666666667777777777777777766554 4555554555444555443333 3444
Q ss_pred HHHh
Q 006071 544 LMMQ 547 (662)
Q Consensus 544 ~~~~ 547 (662)
++..
T Consensus 267 QLk~ 270 (299)
T KOG3081|consen 267 QLKL 270 (299)
T ss_pred HHHh
Confidence 4443
No 126
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.62 E-value=2.2e-06 Score=74.46 Aligned_cols=119 Identities=14% Similarity=0.170 Sum_probs=68.6
Q ss_pred cCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH-HHcCC--hhHH
Q 006071 69 VGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI-LRRGR--YMMA 145 (662)
Q Consensus 69 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~-~~~g~--~~~A 145 (662)
.++.+++...++...+.++. +...|..+...|...|++++|...|++..+.. +.+...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 44455555555555554433 56666666666666666666666666666544 33555555555543 44454 3666
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 146 KRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
.+++++..+.++. +...+..+...+...|++++|...|+.+.+.
T Consensus 130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666655322 4555555555666666666666666666655
No 127
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.54 E-value=0.0016 Score=66.32 Aligned_cols=507 Identities=13% Similarity=0.068 Sum_probs=277.7
Q ss_pred CCCCChHHHHH--HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHH
Q 006071 18 VPQFDHNLVYN--VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFE 95 (662)
Q Consensus 18 ~~~~~~~~l~~--~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 95 (662)
-|+..+..++. ++.+.|+.++|..+++...... +.|..++..+-.+|...++.++|..+|++..... |+.....
T Consensus 39 ~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~--P~eell~ 114 (932)
T KOG2053|consen 39 HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKY--PSEELLY 114 (932)
T ss_pred CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC--CcHHHHH
Confidence 45556666666 4558999999998888776554 5688899999999999999999999999998764 5588888
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCC----------hhHHHHHHHHHHhCC-CCcCHHHH
Q 006071 96 VLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGR----------YMMAKRYFNKMLSEG-IEPTRHTY 164 (662)
Q Consensus 96 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~-~~~~~~~~ 164 (662)
.+..+|.|.+++..-.+.=-++-+ ..+.++..+=++++.+.+... ..-|.+.++.+.+.+ ..-+..-.
T Consensus 115 ~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~ 193 (932)
T KOG2053|consen 115 HLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEI 193 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHH
Confidence 888899998887664444333333 223444444445555444211 223556666766553 22222223
Q ss_pred HHHHHHHHhcCCHHHHHHHHH-HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH--
Q 006071 165 NVMLWGFFLSLKLETAIRFFE-DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY-- 241 (662)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-- 241 (662)
......+-..|++++|..++. .....-..-+...-+.-+..+...+++.+..++-.++...| +|- |...+..+
T Consensus 194 ~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~--~Dd--y~~~~~sv~k 269 (932)
T KOG2053|consen 194 ILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG--NDD--YKIYTDSVFK 269 (932)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC--Ccc--hHHHHHHHHH
Confidence 333344557789999999983 33333333355555677888889999999999999988875 232 22222211
Q ss_pred --------------HhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH---HhCCCHHHHHHHHHHHHHcCCCCCcHHH
Q 006071 242 --------------VAVERADDALRIFDEMKSFDVKPNAVTYTALLPGL---CDAGKMVEVQKVLREMVERYIPPKDNSV 304 (662)
Q Consensus 242 --------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 304 (662)
...+..+...+..++...... .+ .|.+-+.+. ...|+.+++...|-+-. |..| .
T Consensus 270 lLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~-Rg--p~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~kp----c 340 (932)
T KOG2053|consen 270 LLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKS-RG--PYLARLELDKRYKLIGDSEEMLSYYFKKF--GDKP----C 340 (932)
T ss_pred HHHhcccccchhhhhhhhhHHHHHHHHHHhhcccc-cC--cHHHHHHHHHHhcccCChHHHHHHHHHHh--CCCc----H
Confidence 111223333333333332211 11 222222222 34577777554443321 1111 2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-------hHHHHHHHHHcCC-----cHHHHHHHHHHHHHhhhhc-c
Q 006071 305 FMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG-------HYGILIENFCKAE-----MYDRAIKLLDKLVEKEIIL-R 371 (662)
Q Consensus 305 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~-~ 371 (662)
+..=+..|...=..+.-..++....... ++.. .+...+..-.-.| .-+....++.+........ .
T Consensus 341 c~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls 418 (932)
T KOG2053|consen 341 CAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLS 418 (932)
T ss_pred hHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhcccc
Confidence 2222222222222233333333332211 1111 0111111111112 1222233332222111000 0
Q ss_pred CCCCCCCcccc---------HHHHHHHHHhcCChh---HHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006071 372 PQSTLDMEASS---------YNPMIQHLCHNGQTG---KAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKI 439 (662)
Q Consensus 372 ~~~~~~~~~~~---------~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 439 (662)
-..+.-|+..+ -+.+++.+.+.++.. +|+-+++......+.|..+--.+++.|+-.|-+..|.+++..
T Consensus 419 ~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~t 498 (932)
T KOG2053|consen 419 LSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKT 498 (932)
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHh
Confidence 11222233322 245667777777654 566777777777788888889999999999999999999999
Q ss_pred HhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH---HHHHcCCC
Q 006071 440 MGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMK---SMVEKGVK 516 (662)
Q Consensus 440 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~---~~~~~~~~ 516 (662)
+.-.++..|...|.. ..-+...|++..+...++...+- +..+..--...+....+.|.+....++.. ++......
T Consensus 499 LdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkf-y~~~~kE~~eyI~~AYr~g~ySkI~em~~fr~rL~~S~q~ 576 (932)
T KOG2053|consen 499 LDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKF-YDSSLKETPEYIALAYRRGAYSKIPEMLAFRDRLMHSLQK 576 (932)
T ss_pred cchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHH-HhhhhhhhHHHHHHHHHcCchhhhHHHHHHHHHHHHHHHH
Confidence 877667666554433 34455667887777777665532 11111111222333345566665544432 22221111
Q ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 517 ENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 517 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
....+-+.++..++..++++.-...+..+.
T Consensus 577 ~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 577 WACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 122333566777778888877777766554
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=1.8e-07 Score=53.76 Aligned_cols=30 Identities=53% Similarity=0.804 Sum_probs=12.1
Q ss_pred CCCCHHHHHHHHHHHhhcCChHHHHHHHHH
Q 006071 192 ISLDVVTYNTMINGYNRFKKMDEAEKLFAE 221 (662)
Q Consensus 192 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 221 (662)
+.||..+|++|+++|++.|++++|.++|++
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 333444444444444444444444444433
No 129
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=0.00015 Score=62.20 Aligned_cols=190 Identities=14% Similarity=0.122 Sum_probs=102.5
Q ss_pred CcHHHHHHHHHHHHHhhhhccCCCCCCCcccc-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC
Q 006071 351 EMYDRAIKLLDKLVEKEIILRPQSTLDMEASS-YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN 429 (662)
Q Consensus 351 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 429 (662)
.+.++..+++..+..... .....++..+ |..++-+....|+.+.|...++.+....|.+..+-..-...+-..|+
T Consensus 26 rnseevv~l~~~~~~~~k----~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSK----SGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cCHHHHHHHHHHHHHHhh----hcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhc
Confidence 345666666666544321 1112222221 23334444556666667666666666655555554444445555666
Q ss_pred hhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 430 PDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKS 509 (662)
Q Consensus 430 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 509 (662)
+++|.++++.+.+.+ +.|..++--=+...-..|+.-+|++-+.+..+ -+..|...|..+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 666666666666654 33555555444445555555566666666555 3455666666666666666666666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHh
Q 006071 510 MVEKGVKENLDLVAKILEALLMRG---HVEEALGRIDLMMQ 547 (662)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 547 (662)
++-..|. ++..+..+...+.-.| +.+-|.++|.+.++
T Consensus 180 ~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 180 LLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 6554333 3444444544444333 34445555555554
No 130
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.48 E-value=9.7e-05 Score=76.63 Aligned_cols=131 Identities=12% Similarity=0.136 Sum_probs=63.6
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
..+..+.......|..++|..+++.+.+..|.+......++..+.+.+++++|+..++......+. +......+..++.
T Consensus 87 ~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~ 165 (694)
T PRK15179 87 LFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWD 165 (694)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH
Confidence 344444444445555555555555555555555555555555555555555555555555444322 3444444445555
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 461 RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+..++.
T Consensus 166 ~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 166 EIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555555555555554411 122344444444555555555555555555443
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=0.00017 Score=68.18 Aligned_cols=153 Identities=20% Similarity=0.262 Sum_probs=93.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (662)
-.+...|++++|...++.++.. .+-|...+......+.+.|+..+|.+.++.++...+.. ...+-.+..+|.+.|++.
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~-~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNS-PLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHhcCChH
Confidence 3344567777777777777653 22334444445556777777777777777777664442 444555777777777777
Q ss_pred HHHHHHHHHHh-CCCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 537 EALGRIDLMMQ-SGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 537 ~A~~~~~~~~~-~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
+|+..++.... .+..|+ |..+..+|...|+..+|... .++.|...|++++|+..+....+
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A------------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA------------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH------------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 77777776654 344444 45566677777766665433 34455667777777777777665
Q ss_pred cC--CCCcHhhHHHHHH
Q 006071 615 KG--GVTDWKSSDKLIA 629 (662)
Q Consensus 615 ~~--~~~~~~~~~~l~~ 629 (662)
.. +.++|.-+...+.
T Consensus 454 ~~~~~~~~~aR~dari~ 470 (484)
T COG4783 454 QVKLGFPDWARADARID 470 (484)
T ss_pred hccCCcHHHHHHHHHHH
Confidence 43 3345554444443
No 132
>PF12854 PPR_1: PPR repeat
Probab=98.48 E-value=2.4e-07 Score=53.25 Aligned_cols=32 Identities=47% Similarity=0.930 Sum_probs=20.7
Q ss_pred CCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 226 NIEPTVISYTTMIKGYVAVERADDALRIFDEM 257 (662)
Q Consensus 226 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 257 (662)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45666666666666666666666666666665
No 133
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.47 E-value=6.2e-06 Score=67.59 Aligned_cols=92 Identities=8% Similarity=-0.093 Sum_probs=47.9
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcC
Q 006071 61 KMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRG 140 (662)
Q Consensus 61 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g 140 (662)
....++...|++++|...|+......+. +...|..+..++.+.|++++|...|+.....+ +.+...+..+..++...|
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence 3444455555555555555555544332 44555555555555555555555555555443 234445555555555555
Q ss_pred ChhHHHHHHHHHHh
Q 006071 141 RYMMAKRYFNKMLS 154 (662)
Q Consensus 141 ~~~~A~~~~~~~~~ 154 (662)
++++|+..|+..+.
T Consensus 107 ~~~eAi~~~~~Al~ 120 (144)
T PRK15359 107 EPGLAREAFQTAIK 120 (144)
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555544
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=0.00035 Score=66.14 Aligned_cols=116 Identities=16% Similarity=0.179 Sum_probs=55.7
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHH
Q 006071 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNA 320 (662)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (662)
+...|.++.|+..++.+... .+-|+..+......+...++..+|.+.+++++.. .|........+..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence 33445555555555554443 1223333333444445555555555555555543 34334444445555555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHH
Q 006071 321 AADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLL 360 (662)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 360 (662)
|..+++...... +.++..|..|.++|...|+..++....
T Consensus 393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 555555544432 444555555555555555544444333
No 135
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.45 E-value=0.00019 Score=61.57 Aligned_cols=187 Identities=15% Similarity=0.165 Sum_probs=104.1
Q ss_pred CCHHHHHHHHHHHhh---CC-CCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChH
Q 006071 245 ERADDALRIFDEMKS---FD-VKPNAV-TYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 245 ~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (662)
.+.++..+++.++.. .| ..++.. .|..++-+....|+.+.|...++.+..+ .|.+..+...-...+-..|.++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHhhchh
Confidence 445666666655542 22 334433 2344455556667777777777776665 2545554444444555566677
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (662)
+|+++++.+...+ |.|..++-.-+...-..|+.-+|++-+...++.. ..|...|.-+...|...|++++|
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F---------~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF---------MNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh---------cCcHHHHHHHHHHHHhHhHHHHH
Confidence 7777777666654 4445555544545555555555555555554433 23555666666666666666666
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcC---ChhHHHHHHHHHhhC
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEG---NPDSAFEIVKIMGRR 443 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~ 443 (662)
...++.+.-..|.++..+..+...+.-.| +.+.+.++|.+..+.
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 66666666666666655555555544333 344555566555554
No 136
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=0.00015 Score=66.63 Aligned_cols=174 Identities=17% Similarity=0.097 Sum_probs=94.4
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHH
Q 006071 241 YVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNA 320 (662)
Q Consensus 241 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 320 (662)
+.+..++.+|+..+...++.. +.+..-|..-+..+...|+++.+.--.+.-++ ++|..........+++...++..+
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~a~~~~i~ 135 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHLALSDLIE 135 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhhhhHHHHH
Confidence 445566667777776666653 33344444445555556666666555444433 233334444444445555555555
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHH-HHHHhcCChhHH
Q 006071 321 AADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMI-QHLCHNGQTGKA 399 (662)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~a 399 (662)
|...++.- ..+ ....++..++... +.....|...+|..+- .++...++.++|
T Consensus 136 A~~~~~~~---------~~~-----------~~anal~~~~~~~-------~s~s~~pac~~a~~lka~cl~~~~~~~~a 188 (486)
T KOG0550|consen 136 AEEKLKSK---------QAY-----------KAANALPTLEKLA-------PSHSREPACFKAKLLKAECLAFLGDYDEA 188 (486)
T ss_pred HHHHhhhh---------hhh-----------HHhhhhhhhhccc-------ccccCCchhhHHHHhhhhhhhhcccchhH
Confidence 55444410 000 1112222222221 1122223334444432 345667888888
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 444 (662)
...--.+++..+.+......-..++...++.+.+...|++....+
T Consensus 189 ~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld 233 (486)
T KOG0550|consen 189 QSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLD 233 (486)
T ss_pred HHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhccC
Confidence 888888888876666666555566667788888888888887753
No 137
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.40 E-value=3.9e-05 Score=62.90 Aligned_cols=87 Identities=7% Similarity=-0.020 Sum_probs=33.1
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 206 YNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEV 285 (662)
Q Consensus 206 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 285 (662)
+...|++++|...|+...... +.+...|..+..++...|++++|...|+...... +.+..++..+..++...|++++|
T Consensus 34 ~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 333344444444444433321 2233333333344444444444444444433321 22333333333333444444444
Q ss_pred HHHHHHHHH
Q 006071 286 QKVLREMVE 294 (662)
Q Consensus 286 ~~~~~~~~~ 294 (662)
...|+..+.
T Consensus 112 i~~~~~Al~ 120 (144)
T PRK15359 112 REAFQTAIK 120 (144)
T ss_pred HHHHHHHHH
Confidence 444444333
No 138
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.39 E-value=1.3e-05 Score=65.63 Aligned_cols=110 Identities=10% Similarity=0.052 Sum_probs=72.8
Q ss_pred HHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 006071 42 FFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLG 121 (662)
Q Consensus 42 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g 121 (662)
.|+.++..+ |.+......++..+...|++++|...|+.+...++. +...+..+...+...|++++|...++...+.+
T Consensus 5 ~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 81 (135)
T TIGR02552 5 TLKDLLGLD--SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD 81 (135)
T ss_pred hHHHHHcCC--hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 445555554 445566666667777777777777777776665432 66667777777777777777777777766654
Q ss_pred CCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 122 VERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 122 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
+.+...+..+...+...|++++|...|+...+.
T Consensus 82 -p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345566666666777777777777777776664
No 139
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.32 E-value=4.3e-05 Score=63.01 Aligned_cols=114 Identities=17% Similarity=0.160 Sum_probs=66.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHhccCCHHH
Q 006071 497 DGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD-----SLLSVLSEKGKTIA 569 (662)
Q Consensus 497 ~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~~~~~~g~~~~ 569 (662)
.++...+...++.+.+..+... ....-.+...+...|++++|...|+.+......|... .+..++...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5666666666776666543321 1222335566667777777777777776644333321 24445556777777
Q ss_pred HHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 570 AVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKI 612 (662)
Q Consensus 570 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 612 (662)
|+..++..... ...+..+...+++|.+.|++++|...|++.
T Consensus 104 Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777642221 223445556777777777777777777653
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.30 E-value=3.3e-05 Score=63.75 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=79.9
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPA---SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLD--LVAKI 525 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l 525 (662)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+.. ....+
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 444444444 3677777777777777643 122 1223334456777888888888888887765443322 23446
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHhccCCHHHHHHHHHHHh
Q 006071 526 LEALLMRGHVEEALGRIDLMMQSGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCL 578 (662)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~ 578 (662)
..++...|++++|+..++.+...+..|.. ...++++...|++++|+..|++++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 77778888888888887665443344432 345667778888888888887653
No 141
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=98.26 E-value=0.00028 Score=57.38 Aligned_cols=132 Identities=14% Similarity=0.144 Sum_probs=108.1
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC---CCCC-HHH
Q 006071 481 SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSG---SVPN-FDS 556 (662)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~-~~~ 556 (662)
.|....-..+..++.+.|++.+|...|++...--..-+....-.+.++....+++.+|...++++.+.+ -.|+ .-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 477777778888999999999999999999876666688888889999999999999999999998733 3444 234
Q ss_pred HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
+...|...|++++|...|+.+++..+.+....| .+..+.++|+..+|...+..+.+
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHHHH
Confidence 677888999999999999999988766666655 57888999999988777666554
No 142
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.22 E-value=7.7e-05 Score=60.97 Aligned_cols=93 Identities=15% Similarity=0.094 Sum_probs=39.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Q 006071 453 ICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR 532 (662)
Q Consensus 453 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 532 (662)
..+...+...|++++|...++.+...+ +.+...+..+...+...|++++|..+++...+.++. +...+..+..++...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHc
Confidence 333444444444444444444444321 122333334444444444444444444444443322 333333344444444
Q ss_pred CCHHHHHHHHHHHHh
Q 006071 533 GHVEEALGRIDLMMQ 547 (662)
Q Consensus 533 g~~~~A~~~~~~~~~ 547 (662)
|++++|+..+++.++
T Consensus 99 g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 99 GEPESALKALDLAIE 113 (135)
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444444
No 143
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=98.12 E-value=0.0072 Score=55.64 Aligned_cols=256 Identities=15% Similarity=0.179 Sum_probs=154.9
Q ss_pred cCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 006071 349 KAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG 428 (662)
Q Consensus 349 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 428 (662)
-.|+++.|.+-|+.|.+.. + .-...+..+.-...+.|..+.|.++-+......+.-+..+...+...+..|
T Consensus 132 ~eG~~~~Ar~kfeAMl~dP-----E----tRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~g 202 (531)
T COG3898 132 LEGDYEDARKKFEAMLDDP-----E----TRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAG 202 (531)
T ss_pred hcCchHHHHHHHHHHhcCh-----H----HHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcC
Confidence 3466666666666664321 0 000112233333345677777777777777776767777788888888888
Q ss_pred ChhHHHHHHHHHhhC-CCCCCHHh--HHHHHHHHH---hcCChHHHHHHHHHHHHcCCCCcHH-hHHHHHHHHHhcCCHH
Q 006071 429 NPDSAFEIVKIMGRR-GVPRDADA--YICLIESYL---RKGEPADAKTALDSMIEDGHSPASS-LFRSVMESLFEDGRVQ 501 (662)
Q Consensus 429 ~~~~a~~~~~~~~~~-~~~~~~~~--~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~ 501 (662)
+++.|+++++.-... -+.++..- -..|+.+-. -.-++..|...-.+..+ +.||.. .......++.+.|+..
T Consensus 203 dWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~r 280 (531)
T COG3898 203 DWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLR 280 (531)
T ss_pred ChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchh
Confidence 888888888765542 23333321 111222111 12345566666555553 456533 2334456788999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCHH----HHHHHHhccCCHHHHHHHHHH
Q 006071 502 TASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNFD----SLLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 502 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~----~~~~~~~~~g~~~~A~~~~~~ 576 (662)
++-.+++.+-+..+.|+.. .+..+.+.|+. ++.-+++... ...+|+.. ++..+-...|++..|..-.+.
T Consensus 281 Kg~~ilE~aWK~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aea 354 (531)
T COG3898 281 KGSKILETAWKAEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEA 354 (531)
T ss_pred hhhhHHHHHHhcCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHH
Confidence 9999999998877666443 22334555643 3333333322 23666632 344455567899888888886
Q ss_pred HhcCCCCCChhhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCcHhh
Q 006071 577 CLGRDCIIDLASYEKVLDALLAA-GKTLNAYSILFKIMEKGGVTDWKS 623 (662)
Q Consensus 577 ~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~ 623 (662)
+... .|....|..|+++-... |+-.++...+-+.+..+-.|.|..
T Consensus 355 a~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~a 400 (531)
T COG3898 355 AARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWTA 400 (531)
T ss_pred Hhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCcccc
Confidence 6665 45566677777777664 999999999999888777776654
No 144
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.11 E-value=0.00013 Score=69.77 Aligned_cols=125 Identities=20% Similarity=0.257 Sum_probs=92.6
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLF 495 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 495 (662)
....|+..+...++++.|..+|+++.+.. |+ ....++..+...++-.+|.+++++.++. .+-+...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 34556666677788888888888887753 33 4445777777778888888888888863 2335555666666778
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
..++++.|..+.+++....+. +..+|..|+.+|...|++++|+-.++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 888888888888888887555 67788888888888888888888777654
No 145
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.06 E-value=0.00019 Score=68.60 Aligned_cols=122 Identities=16% Similarity=0.171 Sum_probs=62.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 006071 131 ALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFK 210 (662)
Q Consensus 131 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 210 (662)
.++..+...++++.|+++|+++.+.. |+. ...++..+...++-.+|.+++.+..+.. +-+......-...+...+
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcC
Confidence 34444444555555666665555432 232 2234444444555555555555555432 224444444455555566
Q ss_pred ChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 211 KMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 211 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
+++.|..+.+++.... |-+..+|..|..+|...|+++.|+..++.+.
T Consensus 249 ~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 249 KYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred CHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 6666666666655541 2233356666666666666666665555553
No 146
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.06 E-value=0.00018 Score=57.86 Aligned_cols=96 Identities=10% Similarity=-0.087 Sum_probs=76.6
Q ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHH
Q 006071 518 NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVL 593 (662)
Q Consensus 518 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 593 (662)
+......+...+...|++++|..+|+-+.. +.|.. -.++-.+...|++++|+..+.++...++ .++..+..++
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag 110 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAA 110 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHH
Confidence 344555677788899999999999998887 55553 3456666778999999999999998874 5566666799
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006071 594 DALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
.++...|+.+.|.+-|+..+...
T Consensus 111 ~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 111 ECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999999999877654
No 147
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.99 E-value=0.013 Score=54.02 Aligned_cols=256 Identities=15% Similarity=0.107 Sum_probs=142.5
Q ss_pred hCCCHHHHHHHHHHHHHcCCCCCcHHHH----HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcH
Q 006071 278 DAGKMVEVQKVLREMVERYIPPKDNSVF----MKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMY 353 (662)
Q Consensus 278 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 353 (662)
-.|+++.|.+-|+.|.. ++.+. ..|.-...+.|+.+.|..+-+...... +.-...+...+...|..|+|
T Consensus 132 ~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 132 LEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDW 204 (531)
T ss_pred hcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCCh
Confidence 35666666666666654 22221 112222234566666666655554432 33344556666666777777
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCCCccc--cHHHHHHHHH---hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcC
Q 006071 354 DRAIKLLDKLVEKEIILRPQSTLDMEAS--SYNPMIQHLC---HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEG 428 (662)
Q Consensus 354 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 428 (662)
+.|+++++...+.... .++.. .-..++.+-. -..+...|...-....+..+.-...-..-..++.+.|
T Consensus 205 d~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~ 277 (531)
T COG3898 205 DGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVPAAVVAARALFRDG 277 (531)
T ss_pred HHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc
Confidence 7777776665443321 11111 1111222111 1234555666555555555444444555667788889
Q ss_pred ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-CCCCc-HHhHHHHHHHHHhcCCHHHHHHH
Q 006071 429 NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIED-GHSPA-SSLFRSVMESLFEDGRVQTASRV 506 (662)
Q Consensus 429 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~ 506 (662)
+..++-.+++.+-+.. |.+..+..++ +.+.| +.++.-+++..+. .++|| ......+..+....|++..|..-
T Consensus 278 ~~rKg~~ilE~aWK~e--PHP~ia~lY~--~ar~g--dta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~ 351 (531)
T COG3898 278 NLRKGSKILETAWKAE--PHPDIALLYV--RARSG--DTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAK 351 (531)
T ss_pred chhhhhhHHHHHHhcC--CChHHHHHHH--HhcCC--CcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999888864 4444333322 23444 3344444443321 23444 45555666777788888888776
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 507 MKSMVEKGVKENLDLVAKILEALL-MRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 507 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
-+.... ..|....|..+...-. ..|+-.++.+.+-+.+..+-+|.+.
T Consensus 352 Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 352 AEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred HHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 666554 3556666665655543 4488888888888888888888753
No 148
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=0.00066 Score=62.68 Aligned_cols=260 Identities=11% Similarity=-0.034 Sum_probs=153.8
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHH
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADA 468 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 468 (662)
.+.+...+..|+..+..+++..|.+..-|..-+..+...+++++|.--.+.-.+.... ....+.-.-.++...++..+|
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHH
Confidence 3456677788888888888888777777776667777777777776666554442111 111222222333333333333
Q ss_pred HHHHH---------------HHHHcCC-CCcHHhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006071 469 KTALD---------------SMIEDGH-SPASSLFRSVME-SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM 531 (662)
Q Consensus 469 ~~~~~---------------~~~~~~~-~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (662)
.+.++ ....... +|.-.++..+-. .+.-.|++++|...--..++.+.. +......=..++.-
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~-n~~al~vrg~~~yy 215 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDAT-NAEALYVRGLCLYY 215 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccc-hhHHHHhccccccc
Confidence 32222 1111111 133334433322 345678888888877777766444 33333223334556
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHH----------------HHHHhccCCHHHHHHHHHHHhcCCCCCC---hhhHHHH
Q 006071 532 RGHVEEALGRIDLMMQSGSVPNFDSL----------------LSVLSEKGKTIAAVKLLDFCLGRDCIID---LASYEKV 592 (662)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~~~~----------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 592 (662)
.++.+.|+..+++.+. ..|+.... +.-..+.|++..|.+.+..++..+|.+. ...|...
T Consensus 216 ~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nr 293 (486)
T KOG0550|consen 216 NDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNR 293 (486)
T ss_pred ccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHh
Confidence 6777888888887776 55552211 1223467888888888888888765542 4456667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhccc
Q 006071 593 LDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSR 653 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 653 (662)
+-+..+.|+..+|+.-.+..+.... .-...+..-..|+...++|++|..-.+...+...+
T Consensus 294 a~v~~rLgrl~eaisdc~~Al~iD~-syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 294 ALVNIRLGRLREAISDCNEALKIDS-SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HhhhcccCCchhhhhhhhhhhhcCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777788888888888877776532 34445555666777788888886555555555544
No 149
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.92 E-value=0.021 Score=53.97 Aligned_cols=435 Identities=14% Similarity=0.143 Sum_probs=209.7
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH------HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHH--HHh
Q 006071 172 FLSLKLETAIRFFEDMKSRGISLDV------VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKG--YVA 243 (662)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 243 (662)
-+.+++.++..+|.++.+..-. +. ..-+.++++|.. ++.+.....+....+. .| ...|-.+..+ +.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~-~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKES-SPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhc-chHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 4678899999999888765221 21 223455666654 5566666666666553 23 3344444443 347
Q ss_pred cCCHHHHHHHHHHHhhC--CCCCC------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC----CCcHHHH
Q 006071 244 VERADDALRIFDEMKSF--DVKPN------------AVTYTALLPGLCDAGKMVEVQKVLREMVERYIP----PKDNSVF 305 (662)
Q Consensus 244 ~~~~~~a~~~~~~~~~~--~~~~~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~ 305 (662)
.+.+.+|++.+..-... +-.|. -..-+..+.++...|++.++..+++++...-++ - +..+|
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w-~~d~y 170 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEW-NSDMY 170 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcc-cHHHH
Confidence 78888888887766543 21221 111134456677888999988888888775333 3 66677
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHcCC---------cHHHHHHHHHHHHHhhhhccCCCC
Q 006071 306 MKLLGVQCKSGHLNAAADVLKAMIRLS-IPTEAGHYGILIENFCKAE---------MYDRAIKLLDKLVEKEIILRPQST 375 (662)
Q Consensus 306 ~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~~ 375 (662)
+.++-.+.++ +|-++.+.. ...-+. |..++-.|.+.= .+.-...++..+.+.-... |...
T Consensus 171 d~~vlmlsrS--------YfLEl~e~~s~dl~pd-yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~-p~e~ 240 (549)
T PF07079_consen 171 DRAVLMLSRS--------YFLELKESMSSDLYPD-YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIV-PKER 240 (549)
T ss_pred HHHHHHHhHH--------HHHHHHHhcccccChH-HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhC-CHhh
Confidence 7665555442 233332211 111112 222333332211 1111223333332221111 2222
Q ss_pred CCCccc------------cHHHHHHHHHh--cCChhHHHHHHHHHHhcC-----CCCHHHHHHHHHHHHhcCChhHHHHH
Q 006071 376 LDMEAS------------SYNPMIQHLCH--NGQTGKAEIFFRQLMKKG-----VLDPVAFNNLIRGHSKEGNPDSAFEI 436 (662)
Q Consensus 376 ~~~~~~------------~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~ 436 (662)
.+|-.. .+..++..... ..+.+++..+.+.+.... ..-..++..++....+.++...|.+.
T Consensus 241 l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~ 320 (549)
T PF07079_consen 241 LPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQY 320 (549)
T ss_pred ccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 221111 11122222111 114444444444433332 11223455566666666677777666
Q ss_pred HHHHhhCCCCCCHHhHH-------HHHHHHHhc----CChHHHHHHHHHHHHcCCCCcHHhHHHHH---HHHHhcCC-HH
Q 006071 437 VKIMGRRGVPRDADAYI-------CLIESYLRK----GEPADAKTALDSMIEDGHSPASSLFRSVM---ESLFEDGR-VQ 501 (662)
Q Consensus 437 ~~~~~~~~~~~~~~~~~-------~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~-~~ 501 (662)
+..+.... |+...-. .+-+..+.. -+...=+.+|+.....++.- ......++ .-+.+.|. -+
T Consensus 321 l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr-qQLvh~L~~~Ak~lW~~g~~de 397 (549)
T PF07079_consen 321 LALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR-QQLVHYLVFGAKHLWEIGQCDE 397 (549)
T ss_pred HHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH-HHHHHHHHHHHHHHHhcCCccH
Confidence 66665532 3332211 122222211 12223344444444332211 11111222 23445555 67
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH----HHHhC---CCHHHHHHHHHHHHhCCCCCC---HHHHHHH------HhccC
Q 006071 502 TASRVMKSMVEKGVKENLDLVAKILE----ALLMR---GHVEEALGRIDLMMQSGSVPN---FDSLLSV------LSEKG 565 (662)
Q Consensus 502 ~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---g~~~~A~~~~~~~~~~~~~p~---~~~~~~~------~~~~g 565 (662)
+|+.+++.+++.... |..+-+.+.. +|.++ ..+.+-+.+-+-+.+.|+.|- ...+.+. +...|
T Consensus 398 kalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqg 476 (549)
T PF07079_consen 398 KALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQG 476 (549)
T ss_pred HHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcc
Confidence 777777777665222 3333332221 22211 123333333333444566664 1223332 23578
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHH
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLI 628 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 628 (662)
++.++.-+-.-..+- .|++..|..+|-+++...++.+|.+++..++......+....-.++
T Consensus 477 ey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~~~~dskvqKAl~ 537 (549)
T PF07079_consen 477 EYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNERMRDSKVQKALA 537 (549)
T ss_pred cHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 888887776655554 4577888888888888888888888888866543333444333333
No 150
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.92 E-value=1.7e-05 Score=58.14 Aligned_cols=78 Identities=19% Similarity=0.105 Sum_probs=35.8
Q ss_pred cCCHHHHHHHHHHHhcCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHH
Q 006071 564 KGKTIAAVKLLDFCLGRDCII-DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADI 642 (662)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 642 (662)
+|++++|+.+++++++..+.. +...+..++.+|++.|++++|++++++ ..... ........+..+|.+.|++++|..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 345555555555555554321 233333455555555555555555555 21111 122222234555555555555543
Q ss_pred H
Q 006071 643 L 643 (662)
Q Consensus 643 ~ 643 (662)
.
T Consensus 80 ~ 80 (84)
T PF12895_consen 80 A 80 (84)
T ss_dssp H
T ss_pred H
Confidence 3
No 151
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.91 E-value=0.0006 Score=52.95 Aligned_cols=91 Identities=22% Similarity=0.088 Sum_probs=62.2
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHhccCCHHHHHHHHHHHhcCCCCC--ChhhHHHHHHHHH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNF-----DSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVLDALL 597 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~ 597 (662)
+..++-..|+.++|+.+|++....|..... ..+...+...|++++|..++++.+...+.. +......++.++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 566677778888888888887776665542 235666777888888888888777764431 2222334667778
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 006071 598 AAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~ 615 (662)
..|++++|++.+-..+..
T Consensus 87 ~~gr~~eAl~~~l~~la~ 104 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAE 104 (120)
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 888888888888776653
No 152
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.87 E-value=0.0045 Score=57.73 Aligned_cols=143 Identities=20% Similarity=0.146 Sum_probs=78.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHc--CC-CC--CHHHHHHHHHHH
Q 006071 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED-GRVQTASRVMKSMVEK--GV-KE--NLDLVAKILEAL 529 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~--~~-~~--~~~~~~~l~~~~ 529 (662)
+..|...|++..|-.++..+ ...|... |+++.|++.|+++.+. .. .+ -..++..++..+
T Consensus 101 ~~~y~~~G~~~~aA~~~~~l---------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~ 165 (282)
T PF14938_consen 101 IEIYREAGRFSQAAKCLKEL---------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLY 165 (282)
T ss_dssp HHHHHHCT-HHHHHHHHHHH---------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHH
Confidence 34455555555554444443 3456666 7888888888887764 11 11 133456677788
Q ss_pred HhCCCHHHHHHHHHHHHhCCCCCC-----HH-HHH---HHHhccCCHHHHHHHHHHHhcCCCCC--C--hhhHHHHHHHH
Q 006071 530 LMRGHVEEALGRIDLMMQSGSVPN-----FD-SLL---SVLSEKGKTIAAVKLLDFCLGRDCII--D--LASYEKVLDAL 596 (662)
Q Consensus 530 ~~~g~~~~A~~~~~~~~~~~~~p~-----~~-~~~---~~~~~~g~~~~A~~~~~~~~~~~~~~--~--~~~~~~l~~~~ 596 (662)
.+.|++++|+++|+++.......+ .. .++ -.+...|+...|...+++.....+.- + ......++.++
T Consensus 166 ~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~ 245 (282)
T PF14938_consen 166 ARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY 245 (282)
T ss_dssp HHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH
Confidence 888888888888888876432222 11 111 12235788888888888777654322 2 22233444444
Q ss_pred Hh--cCCHHHHHHHHHHHH
Q 006071 597 LA--AGKTLNAYSILFKIM 613 (662)
Q Consensus 597 ~~--~g~~~~A~~~~~~~~ 613 (662)
-. ...+.+|+.-++++.
T Consensus 246 ~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 246 EEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HTT-CCCHHHHCHHHTTSS
T ss_pred HhCCHHHHHHHHHHHcccC
Confidence 33 345666666665544
No 153
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.86 E-value=0.00024 Score=57.16 Aligned_cols=95 Identities=13% Similarity=-0.004 Sum_probs=50.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (662)
....+...+...|++++|..+|+.+...++. +..-|..|..++-..|++++|+..|....... +.++..+-.+..++.
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L 114 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 3344444445555555555555555544332 44455555555555555555555555555544 244445555555555
Q ss_pred HcCChhHHHHHHHHHHh
Q 006071 138 RRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~ 154 (662)
..|+.+.|.+.|+..+.
T Consensus 115 ~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 115 ACDNVCYAIKALKAVVR 131 (157)
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 55555555555555544
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.84 E-value=0.00047 Score=54.82 Aligned_cols=96 Identities=14% Similarity=0.037 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCC--ChhhHHHHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSG-SVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCII--DLASYEKVL 593 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~ 593 (662)
++..++..+.+.|++++|.+.++.+.... ..|. ...++.++...|++++|..+++.++...+.. .+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34445566666677777777776666521 1111 1224556666677777777777666654332 134455677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006071 594 DALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 594 ~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
.++.+.|++++|.+.++++....
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777777664
No 155
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.83 E-value=3.6e-05 Score=45.14 Aligned_cols=33 Identities=33% Similarity=0.701 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPN 265 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 265 (662)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555544
No 156
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=97.81 E-value=4.2e-05 Score=44.85 Aligned_cols=33 Identities=27% Similarity=0.495 Sum_probs=22.8
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPA 483 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 483 (662)
+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777776666665
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.81 E-value=4.7e-05 Score=55.79 Aligned_cols=82 Identities=18% Similarity=0.203 Sum_probs=55.4
Q ss_pred CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006071 33 AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVK 112 (662)
Q Consensus 33 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 112 (662)
.|+++.|+.+|+.+.+..+..++...+..++.++.+.|++++|..+++. .+.+.. +......+..++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence 4778888888888887762112455666678888888888888888877 332221 33455555777888888888888
Q ss_pred HHHH
Q 006071 113 IFDI 116 (662)
Q Consensus 113 ~~~~ 116 (662)
.|++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
No 158
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.80 E-value=0.0091 Score=53.86 Aligned_cols=177 Identities=14% Similarity=0.111 Sum_probs=97.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCCCcHH-h---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 455 LIESYLRKGEPADAKTALDSMIEDGHSPASS-L---FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
....+...|++++|...|+.+.... |+.. . ...+..++.+.++++.|...+++.++..+.-...-+.....+++
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 3444556677777777777777532 2221 1 23445566777777777777777777643322222222222221
Q ss_pred --hCC---------------C---HHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHH
Q 006071 531 --MRG---------------H---VEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYE 590 (662)
Q Consensus 531 --~~g---------------~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 590 (662)
..+ + ..+|++.++++++ .-|+.. -..+|...+..+-+. . ...-.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~--~yP~S~----------ya~~A~~rl~~l~~~---l-a~~e~ 179 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR--GYPNSQ----------YTTDATKRLVFLKDR---L-AKYEL 179 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH--HCcCCh----------hHHHHHHHHHHHHHH---H-HHHHH
Confidence 111 1 2345556666555 333321 122333322211110 0 01112
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcHhhHHHHHHHHHhcCCcchhHHHHHHhhh
Q 006071 591 KVLDALLAAGKTLNAYSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNTKQADILSRMIRG 649 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 649 (662)
.+++.|.+.|++.-|+.-++.+++.=. +....+...++.+|.+.|..++|......+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 477888889999889888888887422 22444555678889999999998777666643
No 159
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.79 E-value=4.3e-05 Score=44.42 Aligned_cols=30 Identities=37% Similarity=0.599 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 006071 198 TYNTMINGYNRFKKMDEAEKLFAEMKEKNI 227 (662)
Q Consensus 198 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 227 (662)
+|+.++.+|++.|+++.|.++|+.|.+.|+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv 32 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGV 32 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 344444444444444444444444444333
No 160
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.79 E-value=0.0017 Score=52.97 Aligned_cols=156 Identities=12% Similarity=0.023 Sum_probs=86.6
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH
Q 006071 23 HNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG 102 (662)
Q Consensus 23 ~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 102 (662)
...+...+...=|++....-.....+. .|+...-..+...+...|++.+|...|++...--+..|......+..+..
T Consensus 59 a~~~~~a~~q~ldP~R~~Rea~~~~~~---ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqf 135 (251)
T COG4700 59 AHTLLMALQQKLDPERHLREATEELAI---APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQF 135 (251)
T ss_pred hHHHHHHHHHhcChhHHHHHHHHHHhh---chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHH
Confidence 344444444444555444444333332 35555555666677777777777777776655334446666666666666
Q ss_pred hcCChhHHHHHHHHHHHcCC-CcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006071 103 KKGIVQESVKIFDIMKQLGV-ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAI 181 (662)
Q Consensus 103 ~~g~~~~A~~~~~~~~~~g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 181 (662)
..+++..|...++.+-+... ..++.+...+.+.+...|++..|...|+..... -|+...-......+.+.|+.+++.
T Consensus 136 a~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~ 213 (251)
T COG4700 136 AIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREAN 213 (251)
T ss_pred hhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHH
Confidence 67777777777776655320 012334445556666677777777777776654 233333333333455566555544
Q ss_pred HH
Q 006071 182 RF 183 (662)
Q Consensus 182 ~~ 183 (662)
.-
T Consensus 214 aq 215 (251)
T COG4700 214 AQ 215 (251)
T ss_pred HH
Confidence 33
No 161
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=97.78 E-value=5.2e-05 Score=44.04 Aligned_cols=32 Identities=31% Similarity=0.587 Sum_probs=18.2
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSP 482 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 482 (662)
+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555544
No 162
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.76 E-value=0.00054 Score=65.88 Aligned_cols=112 Identities=11% Similarity=0.052 Sum_probs=53.4
Q ss_pred cCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006071 124 RSVKSYDALFKLILRRGRYMMAKRYFNKMLSE--GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (662)
Q Consensus 124 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (662)
.+......+++.+....+.+.+..++-++... ....-..|..++++.|.+.|..+.+..++..=...|+.||..++|.
T Consensus 64 vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~ 143 (429)
T PF10037_consen 64 VSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNL 143 (429)
T ss_pred CcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHH
Confidence 34444444444444444455555555444332 1111222334555555555555555555555555555555555555
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT 235 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (662)
||+.+.+.|++..|.++...|...+...+..++.
T Consensus 144 Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~ 177 (429)
T PF10037_consen 144 LMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQA 177 (429)
T ss_pred HHHHHhhcccHHHHHHHHHHHHHhhccCCchHHH
Confidence 5555555555555555555554443333333333
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.76 E-value=0.0005 Score=66.21 Aligned_cols=92 Identities=8% Similarity=-0.080 Sum_probs=69.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
...+...|+++.|++.|+.+++.+ |.+...|..+..+|...|++++|...+++++...+. +...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCC
Confidence 345567788888888888888776 677778888888888888888888888887776543 56677777777778888
Q ss_pred hhHHHHHHHHHHHcC
Q 006071 107 VQESVKIFDIMKQLG 121 (662)
Q Consensus 107 ~~~A~~~~~~~~~~g 121 (662)
+++|+..|+...+.+
T Consensus 86 ~~eA~~~~~~al~l~ 100 (356)
T PLN03088 86 YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHHHHhC
Confidence 888888888777653
No 164
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.75 E-value=0.041 Score=52.12 Aligned_cols=445 Identities=13% Similarity=0.145 Sum_probs=200.1
Q ss_pred HHhcCChHHHHHHHHhcccCCCCCCHHHH------HHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH--H
Q 006071 66 LGRVGKLNHARCILLDMPKKGVQWDEDMF------EVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI--L 137 (662)
Q Consensus 66 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~--~ 137 (662)
+.+.+++.++..+|.++.+..- .++..+ +.++.+|.. ++.+.....+....+.. | ...|-.+..++ -
T Consensus 16 Lqkq~~~~esEkifskI~~e~~-~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKE-SSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh-cchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHH
Confidence 4577888888888888776422 232222 244555543 45555555555554431 2 22333343332 3
Q ss_pred HcCChhHHHHHHHHHHhC--CCCc------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCHHHH
Q 006071 138 RRGRYMMAKRYFNKMLSE--GIEP------------TRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGI----SLDVVTY 199 (662)
Q Consensus 138 ~~g~~~~A~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~ 199 (662)
+.+.+.+|++.+....+. +..+ |-..=+..+.++...|++.+++.+++++..+=+ .-+..+|
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~y 170 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMY 170 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHH
Confidence 567777877777665443 2111 111113344555666777777776666654322 2456666
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006071 200 NTMINGYNRFKKMDEAEKLFAEMKEKNIEPTV-ISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (662)
Q Consensus 200 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (662)
+.++-.+++ ..|-++.+.. .-+. .-|.-++-.|.+.=. .++.-.-..+.|.......++....-
T Consensus 171 d~~vlmlsr--------SYfLEl~e~~-s~dl~pdyYemilfY~kki~------~~d~~~Y~k~~peeeL~s~imqhlfi 235 (549)
T PF07079_consen 171 DRAVLMLSR--------SYFLELKESM-SSDLYPDYYEMILFYLKKIH------AFDQRPYEKFIPEEELFSTIMQHLFI 235 (549)
T ss_pred HHHHHHHhH--------HHHHHHHHhc-ccccChHHHHHHHHHHHHHH------HHhhchHHhhCcHHHHHHHHHHHHHh
Confidence 665544433 2222222110 0010 112223333322110 01100001123443444444433322
Q ss_pred C--CCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CCChhhHHHHHHHHHcCCc
Q 006071 279 A--GKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSI----PTEAGHYGILIENFCKAEM 352 (662)
Q Consensus 279 ~--g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~ 352 (662)
. ....--+++++.-....+.|+..-+...+.....+ +.+++..+.+.+....+ ..-..++..++....+.++
T Consensus 236 ~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~ 313 (549)
T PF07079_consen 236 VPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQ 313 (549)
T ss_pred CCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 11222333344334445566444455555555444 44444444444433211 1123456667777777777
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCCCcccc-------HHHHHHHHH-hc---CChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 006071 353 YDRAIKLLDKLVEKEIILRPQSTLDMEASS-------YNPMIQHLC-HN---GQTGKAEIFFRQLMKKGVLDPVAFNNLI 421 (662)
Q Consensus 353 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~-~~---~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (662)
...|-+.+.-+.-- .|+... -..+.+..+ .. .+...=+.+|+.....+.........|+
T Consensus 314 T~~a~q~l~lL~~l----------dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~ 383 (549)
T PF07079_consen 314 TEEAKQYLALLKIL----------DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLV 383 (549)
T ss_pred HHHHHHHHHHHHhc----------CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Confidence 77777776655321 122211 111122222 11 1222223334443333333333333333
Q ss_pred H---HHHhcCC-hhHHHHHHHHHhhCCCCCCHHhHHHHHH----HHHhc---CChHHHHHHHHHHHHcCCCCcH----Hh
Q 006071 422 R---GHSKEGN-PDSAFEIVKIMGRRGVPRDADAYICLIE----SYLRK---GEPADAKTALDSMIEDGHSPAS----SL 486 (662)
Q Consensus 422 ~---~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~---~~~~~a~~~~~~~~~~~~~~~~----~~ 486 (662)
. -+.+.|. -++|+.+++.+.+.. +-|...-|.+.. +|.+. ..+..-..+-+-+.+.|++|-. ..
T Consensus 384 ~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~ei 462 (549)
T PF07079_consen 384 FGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEI 462 (549)
T ss_pred HHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHH
Confidence 2 2344454 677778877777632 223333332221 22211 1222222333333344655432 22
Q ss_pred HHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 487 FRSVMES--LFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 487 ~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
-+.+.++ +...|++.++.-.-.-+.+ +.|++.+|..++-++....++++|.+++..+
T Consensus 463 an~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 463 ANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 2333322 4456777776654444433 4556777777777777777777777776643
No 165
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.74 E-value=0.0015 Score=51.88 Aligned_cols=92 Identities=21% Similarity=0.252 Sum_probs=37.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 006071 454 CLIESYLRKGEPADAKTALDSMIEDGHSPA----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILE 527 (662)
Q Consensus 454 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 527 (662)
.++..+.+.|++++|...+..+.+.. |+ ......+...+...|+++.|...++.+....+.. ....+..+..
T Consensus 7 ~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 7 DAALLVLKAGDYADAIQAFQAFLKKY--PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33344444444444444444444321 11 1223333444444444444444444444432211 1223333444
Q ss_pred HHHhCCCHHHHHHHHHHHHh
Q 006071 528 ALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~~ 547 (662)
++...|++++|.+.++++.+
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHhCChHHHHHHHHHHHH
Confidence 44444444444444444443
No 166
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.74 E-value=0.0029 Score=59.00 Aligned_cols=168 Identities=13% Similarity=0.049 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCC--C-Cc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006071 452 YICLIESYLRKGEPADAKTALDSMIEDGH--S-PA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (662)
Q Consensus 452 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (662)
|......|...|++++|...|.+..+... . +. ...|...... .+.+++++|+..++++.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~-~k~~~~~~Ai~~~~~A~--------------- 101 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANC-YKKGDPDEAIECYEKAI--------------- 101 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhCHHHHHHHHHHHH---------------
Confidence 33444556666777777766666542210 0 00 1112222222 22335555555555543
Q ss_pred HHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhcc-CCHHHHHHHHHHHhcCCCCC-----ChhhHHHHHHHHHhcC
Q 006071 527 EALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEK-GKTIAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAG 600 (662)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~-g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g 600 (662)
..|...|++..|-..+.++ +..|... |++++|+++++++++.--.. ....+..++..+.+.|
T Consensus 102 ~~y~~~G~~~~aA~~~~~l------------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 102 EIYREAGRFSQAAKCLKEL------------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HHHHHCT-HHHHHHHHHHH------------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHHH------------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 3344555555555444332 3344444 56666666666655431111 1233445666666777
Q ss_pred CHHHHHHHHHHHHHcCCCC---c--Hhh-HHHHHHHHHhcCCcchhHHHHHHh
Q 006071 601 KTLNAYSILFKIMEKGGVT---D--WKS-SDKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 601 ~~~~A~~~~~~~~~~~~~~---~--~~~-~~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
++++|+++++++....... . ... +-..+-++...|+.-.|....+..
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777777666543221 1 111 122344566666666664444433
No 167
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.72 E-value=0.00029 Score=64.77 Aligned_cols=260 Identities=14% Similarity=0.113 Sum_probs=159.2
Q ss_pred HHHhcCChhHHHHHHHHHHhcCCCCHH----HHHHHHHHHHhcCChhHHHHHHHHH--hh--CCCC-CCHHhHHHHHHHH
Q 006071 389 HLCHNGQTGKAEIFFRQLMKKGVLDPV----AFNNLIRGHSKEGNPDSAFEIVKIM--GR--RGVP-RDADAYICLIESY 459 (662)
Q Consensus 389 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~--~~--~~~~-~~~~~~~~l~~~~ 459 (662)
-+++.|+......+|+.+++.|..|.. +|..|..+|...+++++|+++...= .. .|-. -.......|.+.+
T Consensus 26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl 105 (639)
T KOG1130|consen 26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL 105 (639)
T ss_pred HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence 467899999999999999999965554 5777888899999999999875421 11 1100 0223334455555
Q ss_pred HhcCChHHHHHHHHHHH----HcCCC-CcHHhHHHHHHHHHhcC--------------------CHHHHHHHHHHHHHc-
Q 006071 460 LRKGEPADAKTALDSMI----EDGHS-PASSLFRSVMESLFEDG--------------------RVQTASRVMKSMVEK- 513 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g--------------------~~~~a~~~~~~~~~~- 513 (662)
--.|.+++|+.+..+-+ +.|-+ .....+..+...|...| .++.|.++|.+-++.
T Consensus 106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~ 185 (639)
T KOG1130|consen 106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS 185 (639)
T ss_pred hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777765544332 21211 11233444555554332 234455555543332
Q ss_pred ---CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH----hCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcC-
Q 006071 514 ---GVK-ENLDLVAKILEALLMRGHVEEALGRIDLMM----QSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGR- 580 (662)
Q Consensus 514 ---~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~- 580 (662)
|-. .--..|..+...|.-.|+++.|+..-+.-+ +.|.... ...+..++.-.|+++.|.+.+++.+..
T Consensus 186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 100 011234555666667788999987644222 2333322 334667777789999999998865543
Q ss_pred ---CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C-CCcHhhHHHHHHHHHhcCCcchhHHHHHHhh
Q 006071 581 ---DC-IIDLASYEKVLDALLAAGKTLNAYSILFKIMEKG----G-VTDWKSSDKLIAGLNQEGNTKQADILSRMIR 648 (662)
Q Consensus 581 ---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 648 (662)
+. .......++++.+|.-...++.|+.+..+-+... + +-...++-.|..+|-..|..++|..+++.-.
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 21 1235566789999999999999999988844321 1 1144455568889999999999976665443
No 168
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.72 E-value=0.0032 Score=53.75 Aligned_cols=89 Identities=18% Similarity=0.106 Sum_probs=48.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPA--SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
..+..+...+...|++++|...+++..+....+. ...+..+...+.+.|++++|...++++++..+. +...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHH
Confidence 3445555555566666666666666554322221 234555555666666666666666666655433 3444555555
Q ss_pred HHHhCCCHHHHH
Q 006071 528 ALLMRGHVEEAL 539 (662)
Q Consensus 528 ~~~~~g~~~~A~ 539 (662)
++...|+...+.
T Consensus 115 ~~~~~g~~~~a~ 126 (172)
T PRK02603 115 IYHKRGEKAEEA 126 (172)
T ss_pred HHHHcCChHhHh
Confidence 666655544444
No 169
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.70 E-value=0.00032 Score=62.13 Aligned_cols=96 Identities=16% Similarity=0.168 Sum_probs=77.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCH
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGHSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHV 535 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 535 (662)
+-+.+.+++++|+..|.+.++. .| |.+.|..=..+|.+.|.++.|++-.+..+..++. -...|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcH
Confidence 4567888999999999999864 34 4555666677899999999999999888887555 466788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHH
Q 006071 536 EEALGRIDLMMQSGSVPNFDSL 557 (662)
Q Consensus 536 ~~A~~~~~~~~~~~~~p~~~~~ 557 (662)
++|++.|++.++ +.|++.++
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHH
Confidence 999999998887 88886643
No 170
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.69 E-value=0.0015 Score=55.82 Aligned_cols=92 Identities=9% Similarity=0.018 Sum_probs=62.9
Q ss_pred CCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHH
Q 006071 54 HDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWD--EDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDA 131 (662)
Q Consensus 54 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~ 131 (662)
.....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++..+.. +.+...+..
T Consensus 33 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~ 111 (172)
T PRK02603 33 KEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNN 111 (172)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 3445677777778888888888888888776443322 3567777788888888888888888877753 234556666
Q ss_pred HHHHHHHcCChhHHH
Q 006071 132 LFKLILRRGRYMMAK 146 (662)
Q Consensus 132 l~~~~~~~g~~~~A~ 146 (662)
+..++...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 666776666644433
No 171
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.67 E-value=0.00068 Score=51.24 Aligned_cols=58 Identities=22% Similarity=0.299 Sum_probs=21.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHH
Q 006071 94 FEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKM 152 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 152 (662)
+..+...+...|+++.|.+.|+...... +.+...+..+...+...|+++.|...+...
T Consensus 37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 37 YYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3333333333344444444444333322 112223333333344444444444444333
No 172
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.66 E-value=0.00088 Score=49.78 Aligned_cols=41 Identities=17% Similarity=0.316 Sum_probs=22.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhh
Q 006071 168 LWGFFLSLKLETAIRFFEDMKSRGI-SLDVVTYNTMINGYNR 208 (662)
Q Consensus 168 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~ 208 (662)
|..+...+++...-.+|+.+++.|+ .|++.+|+.++.+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3334444555555555555555555 5555555555555443
No 173
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.65 E-value=0.00089 Score=50.58 Aligned_cols=90 Identities=20% Similarity=0.216 Sum_probs=43.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCCh
Q 006071 386 MIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEP 465 (662)
Q Consensus 386 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 465 (662)
+...+...|++++|...++.+.+..+.+...+..+..++...+++++|.+.++...... +.+..++..+...+...|++
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 33444445555555555555555444444444555555555555555555555544432 11233444444445555555
Q ss_pred HHHHHHHHHHH
Q 006071 466 ADAKTALDSMI 476 (662)
Q Consensus 466 ~~a~~~~~~~~ 476 (662)
+.|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
No 174
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.65 E-value=0.0013 Score=61.09 Aligned_cols=78 Identities=13% Similarity=0.170 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH---HHHHHHHHHHhhcCChHHHHHHHH
Q 006071 144 MAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV---VTYNTMINGYNRFKKMDEAEKLFA 220 (662)
Q Consensus 144 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~ 220 (662)
.|..+|+...+. ...+...|...+..+.+.++.+.|+.+|++.... +.++. ..|...+..-.+.|+++.+.++.+
T Consensus 54 ~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~ 131 (280)
T PF05843_consen 54 RARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEK 131 (280)
T ss_dssp HHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344444444333 2223333444444444444444444444444433 11111 244444444444444444444444
Q ss_pred HHH
Q 006071 221 EMK 223 (662)
Q Consensus 221 ~~~ 223 (662)
++.
T Consensus 132 R~~ 134 (280)
T PF05843_consen 132 RAE 134 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 175
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.002 Score=57.62 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHhc---cCCHHHHHHHHH
Q 006071 501 QTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLSE---KGKTIAAVKLLD 575 (662)
Q Consensus 501 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~~---~g~~~~A~~~~~ 575 (662)
+....-++.-+..++. |...|..|...|...|+++.|+..|.+..+ .|.+|+. ..+..++.. .....++..+++
T Consensus 139 ~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 139 EALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3334444555566666 888899999999999999999999998887 3444442 223444332 336678999999
Q ss_pred HHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 576 FCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
+++..++. +......++..++..|++.+|...|+.|++.....
T Consensus 218 ~al~~D~~-~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 218 QALALDPA-NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99998744 34444468999999999999999999999886543
No 176
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.64 E-value=0.0016 Score=62.73 Aligned_cols=104 Identities=16% Similarity=0.113 Sum_probs=88.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChH
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA 466 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 466 (662)
...+...|+++.|+..|++++...+.+...+..+..+|...|++++|+..++.+..... .+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence 34556789999999999999999999999999999999999999999999999998753 36788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMES 493 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (662)
+|...|++.++. .|+...+...+..
T Consensus 88 eA~~~~~~al~l--~P~~~~~~~~l~~ 112 (356)
T PLN03088 88 TAKAALEKGASL--APGDSRFTKLIKE 112 (356)
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 999999999964 4655554444433
No 177
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.64 E-value=0.0011 Score=63.83 Aligned_cols=122 Identities=12% Similarity=0.075 Sum_probs=79.8
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHH
Q 006071 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR--GISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT 235 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 235 (662)
+.+......++..+....+++.+..++-..... ....-..|..++++.|.+.|..+.+..++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 345555666666666666667777766666544 111122334577777777777777777777777777777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhC
Q 006071 236 TMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDA 279 (662)
Q Consensus 236 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 279 (662)
.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 77777777777777777777776655556666666555555443
No 178
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.63 E-value=0.0029 Score=56.64 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcC---ChhHHHH
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKG---IVQESVK 112 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~ 112 (662)
.+....-.+.-++.+ |.|...|..+..+|...|+++.|...|.+..+...+ ++..+..+..++..+. ...++..
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ 214 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARA 214 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 334444444444444 555556666666666666666666665555554332 4555555554443331 2334555
Q ss_pred HHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 113 IFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 113 ~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
+|+++.... +.|+.+...|...+...|++.+|...|+.|...
T Consensus 215 ll~~al~~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 215 LLRQALALD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 555555543 234445555555555556666666655555554
No 179
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.63 E-value=0.00025 Score=49.45 Aligned_cols=55 Identities=15% Similarity=0.219 Sum_probs=47.8
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCC
Q 006071 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKG 86 (662)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 86 (662)
+...|++++|+++|+.+.... |.+..++..++.+|.+.|++++|..+++.+....
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN--PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 346789999999999999887 7899999999999999999999999999998864
No 180
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.62 E-value=0.09 Score=52.59 Aligned_cols=204 Identities=14% Similarity=0.093 Sum_probs=123.0
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHH----------HHHHhcCChhHHHHHHHHHHHcCC
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI----------ESYGKKGIVQESVKIFDIMKQLGV 122 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~----------~~~~~~g~~~~A~~~~~~~~~~g~ 122 (662)
.|.+..|..+.+.....-.++-|...|-+.... +.......+- ..-+--|.+++|.++|-.+.+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD- 764 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD- 764 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence 588999999998887777888888888766542 1221111111 11122378888888888776533
Q ss_pred CcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006071 123 ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNT 201 (662)
Q Consensus 123 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 201 (662)
..+..+.+.|+|-...++++.--.. +...-...|+.+...++....+++|.+.|...... ..
T Consensus 765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~ 827 (1189)
T KOG2041|consen 765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN 827 (1189)
T ss_pred --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence 3456666777777766665442110 00111345677777777777777777777654321 23
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 281 (662)
.+.++.+..++++-+.+.+.+ +.+....-.+..++.+.|--++|.+.|-+.. .| ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHH
Confidence 455666666666555554444 3355666677788888888777777664332 22 133455666677
Q ss_pred HHHHHHHHHH
Q 006071 282 MVEVQKVLRE 291 (662)
Q Consensus 282 ~~~a~~~~~~ 291 (662)
+.+|.++-++
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 7777776554
No 181
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.61 E-value=0.093 Score=52.49 Aligned_cols=31 Identities=13% Similarity=0.002 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 193 SLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 193 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
.|....|..+.......-.++.|+..|-+..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~ 719 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCG 719 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhc
Confidence 4566777777766666666666666655443
No 182
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.59 E-value=0.0014 Score=48.74 Aligned_cols=74 Identities=19% Similarity=0.334 Sum_probs=36.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006071 133 FKLILRRGRYMMAKRYFNKMLSEGI-EPTRHTYNVMLWGFFLSL--------KLETAIRFFEDMKSRGISLDVVTYNTMI 203 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~ll 203 (662)
|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|+.|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444555555555555555555 555555555555544321 1223344445555555555555555554
Q ss_pred HHH
Q 006071 204 NGY 206 (662)
Q Consensus 204 ~~~ 206 (662)
..+
T Consensus 112 ~~L 114 (120)
T PF08579_consen 112 GSL 114 (120)
T ss_pred HHH
Confidence 443
No 183
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.58 E-value=0.072 Score=50.40 Aligned_cols=427 Identities=12% Similarity=0.107 Sum_probs=215.6
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006071 158 EPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTM 237 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 237 (662)
+.|..+|-.++..+...+..++..+.++++..- ++--...|...+++-...+++...+.+|.+.....+ +...|...
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lY 115 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLY 115 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHH
Confidence 346777888888888888888888888888754 333456777777777777888888888888776533 45556555
Q ss_pred HHHHHhcCCH------HHHHHHHHHHh-hCCCCCCH-HHHHHHHH---HHHhCCC------HHHHHHHHHHHHHcCCCCC
Q 006071 238 IKGYVAVERA------DDALRIFDEMK-SFDVKPNA-VTYTALLP---GLCDAGK------MVEVQKVLREMVERYIPPK 300 (662)
Q Consensus 238 ~~~~~~~~~~------~~a~~~~~~~~-~~~~~~~~-~~~~~ll~---~~~~~g~------~~~a~~~~~~~~~~~~~~~ 300 (662)
+.--.+.+.. ....+.|+-.. -.++.|-. ..|+..+. ..-..|. ++.....+.+++.. |
T Consensus 116 l~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~t---P- 191 (660)
T COG5107 116 LEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQT---P- 191 (660)
T ss_pred HHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcC---c-
Confidence 5543333211 11122232222 23333322 22333332 2222232 33344444444442 2
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCC------
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQS------ 374 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------ 374 (662)
.|.+++.+.-|+..... .+..|-..++. -..--+-.|...++++.......+...
T Consensus 192 --------------~~nleklW~dy~~fE~e---~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt 252 (660)
T COG5107 192 --------------MGNLEKLWKDYENFELE---LNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKNPINLRT 252 (660)
T ss_pred --------------cccHHHHHHHHHHHHHH---HHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccCchhhhh
Confidence 12222222222221110 00001000000 001112333333333322110000000
Q ss_pred ---CCCCccccHHHHHHHHHhcC-------ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 006071 375 ---TLDMEASSYNPMIQHLCHNG-------QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (662)
Q Consensus 375 ---~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 444 (662)
.......-|...|.--...+ ......-++++.+..-+..+..|--....+...++-+.|+.........
T Consensus 253 ~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~- 331 (660)
T COG5107 253 ANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM- 331 (660)
T ss_pred hccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC-
Confidence 00001111333333221111 1123334455555554556666666666667777888887776554432
Q ss_pred CCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc--------------CC---------------CCcHHhHHHHHHHHH
Q 006071 445 VPRDADAYICLIESYLRKGEPADAKTALDSMIED--------------GH---------------SPASSLFRSVMESLF 495 (662)
Q Consensus 445 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~---------------~~~~~~~~~l~~~~~ 495 (662)
.|+. -..+...|.-.++-++....|+..... +. ..=..+|...+.+..
T Consensus 332 -spsL--~~~lse~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~ 408 (660)
T COG5107 332 -SPSL--TMFLSEYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVL 408 (660)
T ss_pred -CCch--heeHHHHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHH
Confidence 2331 111222222223333333323222110 00 001223555666666
Q ss_pred hcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHhccCCHHHHHH
Q 006071 496 EDGRVQTASRVMKSMVEKG-VKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLSEKGKTIAAVK 572 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~~~g~~~~A~~ 572 (662)
+..-.+.|..+|-++.+.+ ..++...+++++..+ ..|++.-|..+|+--+. .+..|-+ ...+..+..-++-+.|..
T Consensus 409 r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 409 RKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred HHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 6777888999999988887 556666777777744 45677788888875443 4444442 346666677888899999
Q ss_pred HHHHHhcCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 573 LLDFCLGRDCII-DLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 573 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
+|++++..--.. -...|..+++--..-|+...|..+=+++.+.
T Consensus 488 LFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 488 LFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 999777652111 2566777777777888888888776666654
No 184
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0013 Score=60.95 Aligned_cols=130 Identities=12% Similarity=0.180 Sum_probs=66.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
+|..++....+.+..+.|..+|.++.+....+..+|......-.. .++.+.|..+|+...+. ++.+...|...+..+.
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHH
Confidence 345555555555556666666666654444444444444444222 34455566666665553 3345555666666666
Q ss_pred hcCChHHHHHHHHHHHHcCCCCcH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 461 RKGEPADAKTALDSMIEDGHSPAS---SLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
..|+.+.|..+|++.+.. +.++. ..|...+.--.+.|+.+.+.++.+++.+.
T Consensus 82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666666666666665542 22222 24555555555556666666555555544
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.57 E-value=0.02 Score=51.68 Aligned_cols=56 Identities=9% Similarity=0.026 Sum_probs=26.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhhC--CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 237 MIKGYVAVERADDALRIFDEMKSF--DVKPNAVTYTALLPGLCDAGKMVEVQKVLREM 292 (662)
Q Consensus 237 l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 292 (662)
+.+.|.+.|.+..|..-++.+.+. +.+........+..+|...|..++|..+...+
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 344455555555555555555432 11222334444555555555555555554433
No 186
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.55 E-value=0.0015 Score=55.63 Aligned_cols=81 Identities=5% Similarity=-0.121 Sum_probs=41.0
Q ss_pred HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHH
Q 006071 56 RETHLKMIEILGRVGKLNHARCILLDMPKKGVQW--DEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (662)
Q Consensus 56 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 133 (662)
...|..++..+...|++++|...|++.......+ ...++..+...+...|++++|...++...... +....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3445555555556666666666666654432221 12355555556666666666666666655432 22233344444
Q ss_pred HHHH
Q 006071 134 KLIL 137 (662)
Q Consensus 134 ~~~~ 137 (662)
..+.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.52 E-value=0.028 Score=55.43 Aligned_cols=82 Identities=11% Similarity=0.087 Sum_probs=40.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH------------
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF------------ 554 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~------------ 554 (662)
...+...+.+...+.-|.++|+.|-+. ..+++.....++|++|..+.++.-+ +.|+.
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~D 818 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAEND 818 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhh
Confidence 333333344444555555555555321 2344555556666666665554433 33331
Q ss_pred --HHHHHHHhccCCHHHHHHHHHHHhc
Q 006071 555 --DSLLSVLSEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 555 --~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (662)
...-.++.++|+..||.+++++...
T Consensus 819 rFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 819 RFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 0111234566777777777775543
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.52 E-value=0.0048 Score=48.03 Aligned_cols=107 Identities=13% Similarity=0.178 Sum_probs=66.1
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHcCCCCCC--HHhHHHHHHHHHhcCChHHHHHHHHhcccCCCC--CCHHHHHHHHHHH
Q 006071 26 VYNVLHGAKNSEHALQFFRWVERAGLFNHD--RETHLKMIEILGRVGKLNHARCILLDMPKKGVQ--WDEDMFEVLIESY 101 (662)
Q Consensus 26 l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~ 101 (662)
...++...|+.++|+.+|+.++..+ .... ..++..+...+...|++++|..+|+......+. .+......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~g-L~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAG-LSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC-CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3446667788888888888887765 2222 346667777778888888888888777654221 1223333344456
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHH
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLIL 137 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~ 137 (662)
...|+.++|.+++-.... ++...|..-|..|.
T Consensus 86 ~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 677777777777766553 34445555555443
No 189
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.49 E-value=0.0016 Score=57.78 Aligned_cols=99 Identities=20% Similarity=0.165 Sum_probs=71.4
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAK 469 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 469 (662)
..+.+++.+|+..|..++...|.|+..|..-..+|++.|.++.|++-.+.....+.. ...+|..|..+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHHH
Confidence 456677888888888888887778888888888888888888887777777764311 3467777777888888888888
Q ss_pred HHHHHHHHcCCCCcHHhHHHHH
Q 006071 470 TALDSMIEDGHSPASSLFRSVM 491 (662)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~ 491 (662)
+.|++.++ +.|+..+|-.-+
T Consensus 170 ~aykKaLe--ldP~Ne~~K~nL 189 (304)
T KOG0553|consen 170 EAYKKALE--LDPDNESYKSNL 189 (304)
T ss_pred HHHHhhhc--cCCCcHHHHHHH
Confidence 88777774 557666554433
No 190
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0062 Score=51.81 Aligned_cols=80 Identities=14% Similarity=-0.015 Sum_probs=39.1
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILE 527 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 527 (662)
..|..++..+...|++++|...+++.......+ ...++..+...+...|++++|+..++++....+. ....+..+..
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la~ 114 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 344455555555566666666665555332111 1124455555555566666666666665554322 2333444444
Q ss_pred HHH
Q 006071 528 ALL 530 (662)
Q Consensus 528 ~~~ 530 (662)
.+.
T Consensus 115 i~~ 117 (168)
T CHL00033 115 ICH 117 (168)
T ss_pred HHH
Confidence 444
No 191
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.46 E-value=0.0019 Score=58.69 Aligned_cols=95 Identities=15% Similarity=0.063 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHh-CCCC---CCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHH
Q 006071 522 VAKILEALLMRGHVEEALGRIDLMMQ-SGSV---PNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLD 594 (662)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~ 594 (662)
|...+..+...|++++|+..|+.+++ .+-. |+. .-++.++...|++++|...|+++++..+... +..+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44333333556777777777777765 2211 121 1244555666777777777777666543322 344445666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 006071 595 ALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
++...|++++|.+.++++++.-
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 6667777777777777666553
No 192
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.46 E-value=0.023 Score=57.53 Aligned_cols=135 Identities=9% Similarity=0.032 Sum_probs=78.4
Q ss_pred CCCCHHHHHHHHHHHHhcC-----ChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC--------ChHHHHHHHHHHH
Q 006071 410 GVLDPVAFNNLIRGHSKEG-----NPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG--------EPADAKTALDSMI 476 (662)
Q Consensus 410 ~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~ 476 (662)
.+.+..+|..++++..... +...|..+|+++.+..+. ....|..+..++.... +...+.+...+..
T Consensus 333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3667777777777654322 255777777777775322 3344444433332211 1223333333333
Q ss_pred HcC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 477 EDG-HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 477 ~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
... ...+...+..+.......|++++|...++++++.+ |+...|..++.++...|++++|.+.+++...
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 211 12233445555445555678888888888877765 3566777777778888888888888777766
No 193
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.45 E-value=0.00029 Score=48.54 Aligned_cols=57 Identities=14% Similarity=0.108 Sum_probs=38.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC
Q 006071 27 YNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK 85 (662)
Q Consensus 27 ~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 85 (662)
...+...|++++|++.|+.+++.. |.++.++..+..++...|++++|...|+++.+.
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQD--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCS--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445666777777777777777665 566777777777777777777777777766654
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.45 E-value=0.0019 Score=56.96 Aligned_cols=97 Identities=19% Similarity=0.129 Sum_probs=51.8
Q ss_pred hccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCcHhhHHHHHHHHHhcCCc
Q 006071 562 SEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGG--VTDWKSSDKLIAGLNQEGNT 637 (662)
Q Consensus 562 ~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 637 (662)
...|++.+|...|..-++..|... +..++.|+..++..|++++|..+|..+...-+ +.....+..|..+....|+.
T Consensus 152 ~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 152 YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 345556666666665555543332 33344566666666666666666666554322 12334455566666666666
Q ss_pred chh-HHHHHHhhhhccccchhh
Q 006071 638 KQA-DILSRMIRGEMSRGSQKE 658 (662)
Q Consensus 638 ~~a-~~~~~~~~~~~~~~~~~~ 658 (662)
++| ..+.+.+++.|..+...-
T Consensus 232 d~A~atl~qv~k~YP~t~aA~~ 253 (262)
T COG1729 232 DEACATLQQVIKRYPGTDAAKL 253 (262)
T ss_pred HHHHHHHHHHHHHCCCCHHHHH
Confidence 666 455555555555554443
No 195
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.44 E-value=0.0006 Score=46.90 Aligned_cols=55 Identities=16% Similarity=0.272 Sum_probs=30.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 492 ESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 492 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..+...|++++|...|+.+++..+. +...+..+..++...|++++|+.+++++++
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455556666666666666555433 455555555556666666666666555554
No 196
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.41 E-value=0.00066 Score=47.25 Aligned_cols=51 Identities=14% Similarity=0.297 Sum_probs=32.5
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..|++++|+++|+.+....+. +...+..++.+|.+.|++++|.++++++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 456666677777766666555 555555666666666777776666666665
No 197
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.01 Score=60.05 Aligned_cols=140 Identities=12% Similarity=-0.012 Sum_probs=103.7
Q ss_pred CCccccHHHHHHHHHhc-----CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHhhC
Q 006071 377 DMEASSYNPMIQHLCHN-----GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGN--------PDSAFEIVKIMGRR 443 (662)
Q Consensus 377 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~ 443 (662)
+.+...|...+.+.... +....|..+|+++.+..|.....+..+..++..... ...+.+........
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al 413 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL 413 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc
Confidence 34566777777765432 347789999999999999888888877665543221 23334444443332
Q ss_pred -CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006071 444 -GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKEN 518 (662)
Q Consensus 444 -~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 518 (662)
..+.++..|..+.-.+...|++++|...++++...+ |+...|..+...+...|+.++|.+.++++...++..+
T Consensus 414 ~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 414 PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 233456788888777778899999999999999765 7888899999999999999999999999998866543
No 198
>PRK15331 chaperone protein SicA; Provisional
Probab=97.40 E-value=0.007 Score=49.19 Aligned_cols=92 Identities=15% Similarity=0.032 Sum_probs=67.1
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH-HHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCC
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQ-SGSVPNF-DSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGK 601 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~-~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 601 (662)
....-+...|++++|..+|+-+.. .+..|++ ..++..+...+++++|+..+..+...+. .++..+...+.++...|+
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~ 120 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRK 120 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCC
Confidence 355567788999999998887765 2334443 2345555567899999999987777653 445555568999999999
Q ss_pred HHHHHHHHHHHHHcC
Q 006071 602 TLNAYSILFKIMEKG 616 (662)
Q Consensus 602 ~~~A~~~~~~~~~~~ 616 (662)
.+.|..-|......+
T Consensus 121 ~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 121 AAKARQCFELVNERT 135 (165)
T ss_pred HHHHHHHHHHHHhCc
Confidence 999999998887753
No 199
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.40 E-value=0.00081 Score=46.96 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHh
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG-HVEEALGRIDLMMQ 547 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 547 (662)
.|..+...+...|++++|+..|++.++.++. +...|..+..++...| ++++|++.+++.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 3444444445555555555555555554433 3444444555555555 45555555544443
No 200
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.38 E-value=0.00026 Score=39.92 Aligned_cols=26 Identities=42% Similarity=0.891 Sum_probs=10.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHH
Q 006071 199 YNTMINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 199 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
|+.++++|++.|++++|.++|++|.+
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhH
Confidence 34444444444444444444444433
No 201
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.38 E-value=0.00024 Score=40.08 Aligned_cols=29 Identities=34% Similarity=0.554 Sum_probs=15.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.37 E-value=0.0056 Score=51.99 Aligned_cols=104 Identities=16% Similarity=0.224 Sum_probs=63.6
Q ss_pred CcCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHh
Q 006071 158 EPTRHTYNVMLWGFFLS-----LKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVI 232 (662)
Q Consensus 158 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 232 (662)
..+..+|..++..+.+. |..+-....+..|.+-|+..|..+|+.|++++=+ |.+- -..+|+.+-
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F--------- 112 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF--------- 112 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence 34666666666666532 5566666666666666666667777766666544 2221 111111111
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCC
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAG 280 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 280 (662)
.-| -.+-+-|++++++|...|+-||..++..++..+.+.+
T Consensus 113 ------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 113 ------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111 1234667889999999999999999999988886544
No 203
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.32 E-value=0.099 Score=45.95 Aligned_cols=171 Identities=14% Similarity=0.079 Sum_probs=86.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHcCCC--CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHH
Q 006071 455 LIESYLRKGEPADAKTALDSMIEDGHS--PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA--KILEALL 530 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~ 530 (662)
....+...|++++|...|+.+...... --......++.++.+.|+++.|...++.+++..+.-...-+. .++.++.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 344455667777777777776653211 112334455566667777777777777766653322111111 1111111
Q ss_pred -----------hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhc
Q 006071 531 -----------MRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (662)
Q Consensus 531 -----------~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 599 (662)
..+...+|+..|+.+++ .-|+ ..-..+|...+..+-+. . ...-..+++.|.+.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~~~~~li~--~yP~----------S~y~~~A~~~l~~l~~~---l-a~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIEEFEELIK--RYPN----------SEYAEEAKKRLAELRNR---L-AEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHHHHHHHHH--H-TT----------STTHHHHHHHHHHHHHH---H-HHHHHHHHHHHHCT
T ss_pred HhCccchhcccChHHHHHHHHHHHHHHH--HCcC----------chHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHc
Confidence 11223455556655554 1222 22233333333211111 0 01112478889999
Q ss_pred CCHHHHHHHHHHHHHcCCCC--cHhhHHHHHHHHHhcCCcchhH
Q 006071 600 GKTLNAYSILFKIMEKGGVT--DWKSSDKLIAGLNQEGNTKQAD 641 (662)
Q Consensus 600 g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 641 (662)
|++..|+.-++.+++.=..+ ...+...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 99999999999988863322 2234556888899999888553
No 204
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.31 E-value=0.11 Score=45.89 Aligned_cols=179 Identities=15% Similarity=0.147 Sum_probs=103.3
Q ss_pred HHhcCChHHHHHHHHHHHHcC-CCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh----
Q 006071 459 YLRKGEPADAKTALDSMIEDG-HSP-ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV-KENLDLVAKILEALLM---- 531 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~---- 531 (662)
-.+.|++++|.+.|+.+.... ..| ...+...++-++.+.++++.|+..+++.+...+ .||.. |...+.++..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhccC
Confidence 346688888888888777542 111 244555666677788888888888888877733 33333 3333333331
Q ss_pred ---CCCH---HHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHH
Q 006071 532 ---RGHV---EEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNA 605 (662)
Q Consensus 532 ---~g~~---~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 605 (662)
..+. .+|..-+++++. --|+.....++-. =+..++..+. ..=..+++-|.+.|.+.-|
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~--ryPnS~Ya~dA~~-------~i~~~~d~LA-------~~Em~IaryY~kr~~~~AA 186 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQ--RYPNSRYAPDAKA-------RIVKLNDALA-------GHEMAIARYYLKRGAYVAA 186 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHH--HCCCCcchhhHHH-------HHHHHHHHHH-------HHHHHHHHHHHHhcChHHH
Confidence 1122 233334444443 2233211111111 1111111111 1112577888899999999
Q ss_pred HHHHHHHHHcCCC--CcHhhHHHHHHHHHhcCCcchhHHHHHHhhhhcccc
Q 006071 606 YSILFKIMEKGGV--TDWKSSDKLIAGLNQEGNTKQADILSRMIRGEMSRG 654 (662)
Q Consensus 606 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 654 (662)
..-++.+++.-.. -...++..+..+|.+-|-.++|......|..+...+
T Consensus 187 ~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s 237 (254)
T COG4105 187 INRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDS 237 (254)
T ss_pred HHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCC
Confidence 9999998886332 234455668888999999999988888888776655
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.29 E-value=0.06 Score=47.33 Aligned_cols=57 Identities=14% Similarity=0.150 Sum_probs=25.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCC--CcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 006071 99 ESYGKKGIVQESVKIFDIMKQLGV--ERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE 155 (662)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 155 (662)
..+...|++.+|...|+.+...-. +.-..+.-.++.++.+.|+++.|...++.+++.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334445555555555555544310 111223344445555555555555555555443
No 206
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.24 E-value=0.0071 Score=54.98 Aligned_cols=87 Identities=13% Similarity=0.100 Sum_probs=43.0
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCCH----HHHHHHHhccCCH
Q 006071 495 FEDGRVQTASRVMKSMVEKGVKEN--LDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPNF----DSLLSVLSEKGKT 567 (662)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~~----~~~~~~~~~~g~~ 567 (662)
.+.|++++|+..|+.+++..+... ...+..++.+|...|++++|+..|+.+.+ .+..|.. ..++.++...|+.
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 344555555555555555433321 23334455555566666666666655554 2222221 1233344455666
Q ss_pred HHHHHHHHHHhcCC
Q 006071 568 IAAVKLLDFCLGRD 581 (662)
Q Consensus 568 ~~A~~~~~~~~~~~ 581 (662)
++|..+++++++..
T Consensus 234 ~~A~~~~~~vi~~y 247 (263)
T PRK10803 234 AKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHHC
Confidence 66666666555543
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.021 Score=53.14 Aligned_cols=132 Identities=18% Similarity=0.094 Sum_probs=83.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhc----C--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHh----hCCC-CCCHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKK----G--VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG----RRGV-PRDAD 450 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~-~~~~~ 450 (662)
.|..+...|.-.|+++.|+...+.-... | .....++..+..++.-.|+++.|.+.++... +.|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3444555555667888888776654332 2 2334567778888888888888888887643 2221 12334
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIED-----GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+.-+|.+.|.-..+++.|+.++.+-+.- ...-....+.+|..++...|..+.|+.+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 5556777777777788888777664321 11123345667777788888888888777766543
No 208
>PRK15331 chaperone protein SicA; Provisional
Probab=97.16 E-value=0.0087 Score=48.63 Aligned_cols=93 Identities=8% Similarity=-0.080 Sum_probs=73.0
Q ss_pred HHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCc
Q 006071 558 LSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNT 637 (662)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 637 (662)
+.-+...|++++|..+|......++. ++..+..|+.++-..|++++|+..+.....-. ..++..+.+...||...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 34445799999999999977776544 45566789999999999999999999877653 35666778899999999999
Q ss_pred chhHHHHHHhhhhcc
Q 006071 638 KQADILSRMIRGEMS 652 (662)
Q Consensus 638 ~~a~~~~~~~~~~~~ 652 (662)
+.|+.-.+.....+.
T Consensus 122 ~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 122 AKARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHHhCcc
Confidence 999766555555433
No 209
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.14 E-value=0.0079 Score=51.11 Aligned_cols=115 Identities=15% Similarity=0.184 Sum_probs=81.3
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006071 111 VKIFDIMKQLGVERSVKSYDALFKLILRR-----GRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFE 185 (662)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 185 (662)
...|+.... -..+-.+|..++..|.+. |..+-....+..|.+.|+..|..+|+.|++.+=+ |.+- -..+|+
T Consensus 34 ~~~f~~~~~--~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ 109 (228)
T PF06239_consen 34 EELFERAPG--QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ 109 (228)
T ss_pred HHHHHHHhh--ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH
Confidence 345555532 257889999999999864 6677777888999999999999999999998754 3322 111111
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCC
Q 006071 186 DMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVER 246 (662)
Q Consensus 186 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 246 (662)
.+-. -.-.+.+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 110 ~~F~-----------------hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 110 AEFM-----------------HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHhc-----------------cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 1123446678899999999999999999999998866554
No 210
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.07 E-value=0.0018 Score=45.24 Aligned_cols=61 Identities=23% Similarity=0.307 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcC-ChHHHHHHHHHHH
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKG-EPADAKTALDSMI 476 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~ 476 (662)
.+|..+...+...|++++|+..|++..+.+ +.+...|..+..++...| ++++|+..+++.+
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344444444555555555555555444432 113444444444555554 3555555554444
No 211
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.04 E-value=0.19 Score=47.75 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=21.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh
Q 006071 589 YEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWK 622 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 622 (662)
+..++.+..-.|++++|.+..+++.... ++.|.
T Consensus 308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~-~~~W~ 340 (374)
T PF13281_consen 308 VATLLEASVLAGDYEKAIQAAEKAFKLK-PPAWE 340 (374)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHhhcC-Ccchh
Confidence 4456666666777777777777777553 44553
No 212
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.00 E-value=0.34 Score=46.08 Aligned_cols=457 Identities=10% Similarity=0.077 Sum_probs=244.6
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006071 41 QFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQL 120 (662)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 120 (662)
++=+.+.+ + |.+...|..+++-+...|.+++.+++++++... .+.-+.+|...+.+-....++.....+|.+....
T Consensus 30 rLRerIkd-N--PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k 105 (660)
T COG5107 30 RLRERIKD-N--PTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK 105 (660)
T ss_pred HHHHHhhc-C--chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence 44444433 3 788999999999999999999999999999864 3335667888888877888999999999998874
Q ss_pred CCCcCHHhHHHHHHHHHHcCCh------hHHHHHHHHHHh-CCCCcC-HHHHHHHHHHH---HhcC------CHHHHHHH
Q 006071 121 GVERSVKSYDALFKLILRRGRY------MMAKRYFNKMLS-EGIEPT-RHTYNVMLWGF---FLSL------KLETAIRF 183 (662)
Q Consensus 121 g~~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~-~~~~~~-~~~~~~ll~~~---~~~~------~~~~a~~~ 183 (662)
. .+...|...+....+.... ....+.|+-.+. .++.|- ...|+..+..+ -..| +++.....
T Consensus 106 ~--l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 106 S--LNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred h--ccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 3 5567777666655443311 111223333222 133332 22333333221 1223 34445555
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhh--C
Q 006071 184 FEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIE-PTVISYTTMIKGYVAVERADDALRIFDEMKS--F 260 (662)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 260 (662)
+.++....+..=...|+. ++.-+.-+..+..+.+. ..... +-.|...++++.. .
T Consensus 184 Y~ral~tP~~nleklW~d----------y~~fE~e~N~~TarKfvge~sp~-------------ym~ar~~yqe~~nlt~ 240 (660)
T COG5107 184 YMRALQTPMGNLEKLWKD----------YENFELELNKITARKFVGETSPI-------------YMSARQRYQEIQNLTR 240 (660)
T ss_pred HHHHHcCccccHHHHHHH----------HHHHHHHHHHHHHHHHhcccCHH-------------HHHHHHHHHHHHHHhc
Confidence 655554422100111211 11111111111100000 00001 1122222222211 1
Q ss_pred CC----CCCHHH-----------HHHHHHHHHhC------CCH-HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh
Q 006071 261 DV----KPNAVT-----------YTALLPGLCDA------GKM-VEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (662)
Q Consensus 261 ~~----~~~~~~-----------~~~ll~~~~~~------g~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (662)
|. +.+..+ |...+..-... +-. ....-+++..... .|-.+.+|......+...++-
T Consensus 241 Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y--~~~~~evw~dys~Y~~~isd~ 318 (660)
T COG5107 241 GLSVKNPINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY--FYYAEEVWFDYSEYLIGISDK 318 (660)
T ss_pred cccccCchhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH--hhhhHHHHHHHHHHHhhccHH
Confidence 10 011111 11222111110 111 1122223333332 122455555555556667777
Q ss_pred HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHh---cCC
Q 006071 319 NAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCH---NGQ 395 (662)
Q Consensus 319 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~ 395 (662)
+.|........ +..+...-.+...|.-.++-+.....|+.+.+.-.. -| ..+.+-+. .|+
T Consensus 319 q~al~tv~rg~----~~spsL~~~lse~yel~nd~e~v~~~fdk~~q~L~r------------~y-s~~~s~~~s~~D~N 381 (660)
T COG5107 319 QKALKTVERGI----EMSPSLTMFLSEYYELVNDEEAVYGCFDKCTQDLKR------------KY-SMGESESASKVDNN 381 (660)
T ss_pred HHHHHHHHhcc----cCCCchheeHHHHHhhcccHHHHhhhHHHHHHHHHH------------HH-hhhhhhhhccccCC
Confidence 77776655433 333333333444555556666666666655321100 00 00111000 122
Q ss_pred hhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHhcCChHHHHHHHHH
Q 006071 396 TGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLRKGEPADAKTALDS 474 (662)
Q Consensus 396 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 474 (662)
++...+++-+-. ..-..+|...+....+..-++.|..+|-++.+.+ +.+++..+++++..++. |++.-|..+|+-
T Consensus 382 ~e~~~Ell~kr~---~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifel 457 (660)
T COG5107 382 FEYSKELLLKRI---NKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFEL 457 (660)
T ss_pred ccccHHHHHHHH---hhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHH
Confidence 322222211111 1234567777888888888999999999999887 66788889999987764 888999999988
Q ss_pred HHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCC
Q 006071 475 MIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVP 552 (662)
Q Consensus 475 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p 552 (662)
-... ++.+..-....+.-+...++-+.|..+|+..+.+ +.. -...|..++.--..-|+...+..+-+++.+ ..|
T Consensus 458 Gl~~-f~d~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~p 533 (660)
T COG5107 458 GLLK-FPDSTLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVP 533 (660)
T ss_pred HHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcC
Confidence 6653 3233334455666778889999999999977665 111 256788888888889999999888888877 444
Q ss_pred C
Q 006071 553 N 553 (662)
Q Consensus 553 ~ 553 (662)
.
T Consensus 534 Q 534 (660)
T COG5107 534 Q 534 (660)
T ss_pred c
Confidence 4
No 213
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.91 E-value=0.52 Score=46.87 Aligned_cols=311 Identities=12% Similarity=0.110 Sum_probs=172.8
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH-hcCChhHHHH
Q 006071 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG-KKGIVQESVK 112 (662)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~ 112 (662)
.+.+.+...+..++..- |.-...|......-.+.|..+.+..+|++.+. +++.+...|...+..+. ..|+.+....
T Consensus 59 ~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~ 135 (577)
T KOG1258|consen 59 EDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRD 135 (577)
T ss_pred hHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHH
Confidence 34567777777777653 77777888999888999999999999999887 56677888888776654 4478888888
Q ss_pred HHHHHHHc-CCC-cCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH---hc------CCHHHHH
Q 006071 113 IFDIMKQL-GVE-RSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF---LS------LKLETAI 181 (662)
Q Consensus 113 ~~~~~~~~-g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~---~~------~~~~~a~ 181 (662)
.|+.+... |.. .+...|...|..-..++++.....++++.++.. ...|+.....|. +. ...+.+.
T Consensus 136 ~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP----~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~ 211 (577)
T KOG1258|consen 136 LFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIP----LHQLNRHFDRFKQLLNQNEEKILLSIDELI 211 (577)
T ss_pred HHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhh----hhHhHHHHHHHHHHHhcCChhhhcCHHHHH
Confidence 99888764 311 245578888888888899999999999997641 222333322222 21 1223333
Q ss_pred HHHHHHHhC----CCCCCHHHHHHHHHHH-hhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 182 RFFEDMKSR----GISLDVVTYNTMINGY-NRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDE 256 (662)
Q Consensus 182 ~~~~~~~~~----~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 256 (662)
++-.....+ ...+....+..-+.-- ...+..+++..++.+... .--.++............|+.
T Consensus 212 ~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~-----------~~~~~~~~s~~~~~kr~~fE~ 280 (577)
T KOG1258|consen 212 QLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVS-----------IHEKVYQKSEEEEEKRWGFEE 280 (577)
T ss_pred HHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHH-----------HHHHHHHhhHhHHHHHHhhhh
Confidence 322222211 0000111111111100 011112222221111111 001112222223333333443
Q ss_pred HhhC---CCC----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 006071 257 MKSF---DVK----PNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMI 329 (662)
Q Consensus 257 ~~~~---~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 329 (662)
-... .+. ++..+|..-+.--...|+.+.+.-+++...-.- . .-...|...+......|+.+.|..++....
T Consensus 281 ~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A-~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 281 GIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC-A-LYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-h-hhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 3321 122 244577777777788888888888888775531 1 134556666666666687777777776655
Q ss_pred hCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHH
Q 006071 330 RLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLV 364 (662)
Q Consensus 330 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 364 (662)
+-.++..+.+--.-....-..|++..|..+++.+.
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~ 393 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIE 393 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 54333322222211222223467777777777764
No 214
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.26 Score=43.25 Aligned_cols=137 Identities=12% Similarity=0.024 Sum_probs=78.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHH
Q 006071 305 FMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYN 384 (662)
Q Consensus 305 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (662)
.+.++.++.-.|.+.-....++++++...+.++...+.+++.-.+.|+.+.|...|++..+.... -.+...+.....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~k---L~~~q~~~~V~~ 256 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQK---LDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh---hhccchhHHHHh
Confidence 34444444445555555555555555444445555555555555555555555555544322110 011111111122
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG 444 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 444 (662)
.....+.-.+++..|...+.++...++.++...|.-.-+....|+..+|.+.++.|....
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 222334556777788888888888887788887777777777788999999998888753
No 215
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.22 Score=44.78 Aligned_cols=122 Identities=19% Similarity=0.157 Sum_probs=74.1
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
-+...|++.+|..+|..+.... +.+..+-..++++|...|+.+.|..++..++...-.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4456677778888887777766 56667777777777788888888888777765432222222223344555555555
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS 154 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 154 (662)
+...+-..+-.. +-|...-..+...+...|+.+.|.+.+-.+++
T Consensus 221 ~~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 221 EIQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555544444431 22555556666666677777777665555543
No 216
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.21 Score=44.98 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=100.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHhccCCH
Q 006071 491 MESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS---LLSVLSEKGKT 567 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~---~~~~~~~~g~~ 567 (662)
.......|++.+|...|+.......+ +....-.+..+|...|+.++|..++..+-..--...... -+..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33567789999999999999988666 455566799999999999999999886643211111111 23444455555
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHhcCCcchh
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEGNTKQA 640 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a 640 (662)
.+...+-.+ +..++ .+...-..++..+...|+.++|++.+-.++.+... .+...-..|+..+..-|..+.+
T Consensus 220 ~~~~~l~~~-~aadP-dd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRR-LAADP-DDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHH-HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 544444443 33332 24444457999999999999999999998876432 3445556788888888877665
No 217
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.84 E-value=0.75 Score=47.61 Aligned_cols=183 Identities=14% Similarity=0.133 Sum_probs=113.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 57 ETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 57 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
.....-+..+.+...+.-|..+.+.-... ..--..++......+.+.|++++|...|-+.... .++ ..++.-|
T Consensus 335 k~le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~---le~---s~Vi~kf 407 (933)
T KOG2114|consen 335 KDLETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF---LEP---SEVIKKF 407 (933)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc---CCh---HHHHHHh
Confidence 45666777778888888888876644321 1111233444455566789999998888776532 111 2355566
Q ss_pred HHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHH
Q 006071 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAE 216 (662)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 216 (662)
....+...-..+++.+.+.|.. +...-..|+.+|.+.++.+.-.++.+... .|.- ..-....+..+.+.+-.++|.
T Consensus 408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~ 483 (933)
T KOG2114|consen 408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE 483 (933)
T ss_pred cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence 6666677777788888888765 45555678889999999888776665544 2211 111334566666667777776
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006071 217 KLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMK 258 (662)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 258 (662)
.+-..... +......+ +-..+++++|++.+..+.
T Consensus 484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCC
Confidence 66544432 33333333 334688899998887763
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.79 E-value=0.0076 Score=42.56 Aligned_cols=58 Identities=17% Similarity=0.121 Sum_probs=42.5
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGV 87 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 87 (662)
.++.+.++++.|++.++.+...+ |.++..|.....++.+.|++.+|.+.|+...+.++
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 45667777777777777777776 66777777777777777777777777777776543
No 219
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.79 E-value=0.016 Score=55.56 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-------HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 519 LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-------FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
...++.+..+|...|++++|+..|++.++ +.|+ +..++.+|...|+.++|+..++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44455555566666666666666655555 3333 233444455555555555555555553
No 220
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.78 E-value=0.01 Score=41.86 Aligned_cols=54 Identities=19% Similarity=0.258 Sum_probs=29.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 493 SLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 493 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|.+.+++++|.++++.++..++. +...+...+.++...|++++|.+.+++..+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 345555555555555555555444 444455555555555555555555555554
No 221
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.67 E-value=0.058 Score=44.53 Aligned_cols=69 Identities=20% Similarity=0.313 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHH-----HcCCCCcHHh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMI-----EDGHSPASSL 486 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-----~~~~~~~~~~ 486 (662)
...++..+...|++++|..+.+.+.... +.+...|..++.+|...|+..+|...|+.+. +.|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3444445555555555555555555542 2245555555555555555555555555543 1255555443
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.66 E-value=0.53 Score=44.86 Aligned_cols=79 Identities=10% Similarity=-0.036 Sum_probs=53.9
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHh---cCChhHHHHHHHHHhhCCCCCCHHhHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSK---EGNPDSAFEIVKIMGRRGVPRDADAYIC 454 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (662)
+...++-+|....+++....+.+.+.... ...+.+-...+.++.+ .|+.++|+.++..+......+++.+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 34456667888888888888888887763 2233444455666666 7888888888887555555667777777
Q ss_pred HHHHHH
Q 006071 455 LIESYL 460 (662)
Q Consensus 455 l~~~~~ 460 (662)
+...|-
T Consensus 223 ~GRIyK 228 (374)
T PF13281_consen 223 LGRIYK 228 (374)
T ss_pred HHHHHH
Confidence 766653
No 223
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.63 E-value=0.45 Score=42.11 Aligned_cols=71 Identities=17% Similarity=0.129 Sum_probs=44.5
Q ss_pred HHhcCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGV---LDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL 460 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 460 (662)
-.+.|++++|...|+.+....| ....+.-.++.++.+.++++.|+..+++.....+.....-|...+.+++
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs 117 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLS 117 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHH
Confidence 3466788888888888877663 3445556666777778888888888877776432222233444444433
No 224
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.62 E-value=0.65 Score=43.83 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=77.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKG 565 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g 565 (662)
+.+..+.-|...|....|.++.++. .+ |+...|...+.+|+..++|++-.++.+. ...+-.+..++..|.+.|
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHCC
Confidence 4555566677788887777765554 34 4777888888899999998887765432 122233667888888888
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
+..+|..++.++ .+...+..|.+.|.+.+|.+.-.+
T Consensus 252 ~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 252 NKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred CHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888998888851 124567788889999998877544
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.61 E-value=0.21 Score=49.66 Aligned_cols=100 Identities=19% Similarity=0.273 Sum_probs=53.4
Q ss_pred cHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc
Q 006071 301 DNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA 380 (662)
Q Consensus 301 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 380 (662)
+......+...+.+...+..|-++|..+-+ ...+++.....++|++|..+-+.. |+ ..|+
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~h--------Pe--~~~d- 805 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKH--------PE--FKDD- 805 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhC--------cc--cccc-
Confidence 333444444445555566666666666533 234566666777777777766655 22 1222
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
.|.....-++...++++|.+ +|.+.|+-.+|..+++++..
T Consensus 806 -Vy~pyaqwLAE~DrFeEAqk---------------------AfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 806 -VYMPYAQWLAENDRFEEAQK---------------------AFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred -ccchHHHHhhhhhhHHHHHH---------------------HHHHhcchHHHHHHHHHhhh
Confidence 22233333344444444433 44456677777777776654
No 226
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.53 E-value=0.31 Score=44.92 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=86.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCC---HHhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-----CCcHHh
Q 006071 416 AFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRD---ADAYICLIESYLRKGEPADAKTALDSMIEDGH-----SPASSL 486 (662)
Q Consensus 416 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 486 (662)
+|..+.+++.+.-++.+++.+-+.-... |..|. -....++..++...+.++.+++.|+...+-.. ...-.+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 4455555555555555555554443331 21221 12333455666666667777777776653211 112234
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-----HHHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCC
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEK----GVKENL-----DLVAKILEALLMRGHVEEALGRIDLMMQ----SGSVPN 553 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~ 553 (662)
+..+...|....|+++|.-+..++.+. ++..-. .....+.-++...|+.-+|.+..++..+ .|..|-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 556666667777777776666655443 222111 1122344456666666666666555443 444444
Q ss_pred H----HHHHHHHhccCCHHHHHHHHHHHhc
Q 006071 554 F----DSLLSVLSEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 554 ~----~~~~~~~~~~g~~~~A~~~~~~~~~ 579 (662)
. -.+.++|...|+.+.|..-++.+..
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2 2366677777777777777776654
No 227
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=1.2 Score=45.60 Aligned_cols=122 Identities=11% Similarity=0.063 Sum_probs=64.7
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCH--HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCH
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDA--DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRV 500 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 500 (662)
++..-|+-++|..+.++|.... .|-. .-.-.+..+|+-.|+.....+++.-.... ...|..-...+.-++.-..++
T Consensus 510 aL~~ygrqe~Ad~lI~el~~dk-dpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp 587 (929)
T KOG2062|consen 510 ALVVYGRQEDADPLIKELLRDK-DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDP 587 (929)
T ss_pred HHHHhhhhhhhHHHHHHHhcCC-chhhhhhhHHHHHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecCh
Confidence 3444566667777777776532 1111 11223455667777777766666665542 223333333333344556677
Q ss_pred HHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 501 QTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 501 ~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
+....+.+-+.+. ++......--++.-+|.-.|. .+|+.+++-|..
T Consensus 588 ~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 588 EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 7777777665543 222222222334444544554 677777777764
No 228
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.52 E-value=0.51 Score=41.53 Aligned_cols=130 Identities=15% Similarity=0.092 Sum_probs=64.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHH-----HHHH
Q 006071 165 NVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYT-----TMIK 239 (662)
Q Consensus 165 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~l~~ 239 (662)
+.++..+.-.|.+.-....+.+..+...+.+......|.+.-.+.||.+.|...|++..+..-..|..+++ ....
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 34444444555666666666666665545555566666666666666666666666554321112222222 2222
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVER 295 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 295 (662)
.|.-.+++.+|...+.++...+ +.|+...|.-.-+..-.|+...|++.++.++..
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555554432 223333333333333445555555555555543
No 229
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.52 E-value=1.2 Score=45.64 Aligned_cols=109 Identities=16% Similarity=0.067 Sum_probs=63.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhcc
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEK 564 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~ 564 (662)
.+.+..+.-+...|...+|.++-++.. -|+...|-.-+.++...++|++-+++-+.... .-.+.-+..+|.++
T Consensus 685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c~~~ 757 (829)
T KOG2280|consen 685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEACLKQ 757 (829)
T ss_pred CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHHHhc
Confidence 344444555666677777766655542 23555666566667777777666655443321 22245566677777
Q ss_pred CCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 006071 565 GKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSIL 609 (662)
Q Consensus 565 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 609 (662)
|+.+||.+++.+.-.. . ..+.+|.+.|++.+|.+.-
T Consensus 758 ~n~~EA~KYiprv~~l-------~--ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 758 GNKDEAKKYIPRVGGL-------Q--EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred ccHHHHhhhhhccCCh-------H--HHHHHHHHhccHHHHHHHH
Confidence 7777777777633221 1 3556667777777776553
No 230
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.51 E-value=0.0043 Score=44.53 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
..+..++.++...|++++|++++++..+
T Consensus 47 ~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 47 NTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4456677777778888888777777553
No 231
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.51 E-value=0.038 Score=42.37 Aligned_cols=92 Identities=21% Similarity=0.068 Sum_probs=48.3
Q ss_pred HHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHh---hHHHHHHHHHhcCC
Q 006071 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWK---SSDKLIAGLNQEGN 636 (662)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~ 636 (662)
++.+.|+.+.|++.|.+++..-| ..+..|+.-+.++.-+|+.++|++-+++.++..+..... +|..-...|+..|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 34456666666666666665532 234445556666666666666666666666544433221 22223334566666
Q ss_pred cchhHHHHHHhhhhcc
Q 006071 637 TKQADILSRMIRGEMS 652 (662)
Q Consensus 637 ~~~a~~~~~~~~~~~~ 652 (662)
-+.|+.=.+....+++
T Consensus 131 dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGS 146 (175)
T ss_pred hHHHHHhHHHHHHhCC
Confidence 6666444444444443
No 232
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.49 E-value=0.063 Score=47.72 Aligned_cols=87 Identities=18% Similarity=0.109 Sum_probs=42.5
Q ss_pred HHhCCCHHHHHHHHHHHHhC----CCCCCHHH-HHHHHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCC
Q 006071 529 LLMRGHVEEALGRIDLMMQS----GSVPNFDS-LLSVLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGK 601 (662)
Q Consensus 529 ~~~~g~~~~A~~~~~~~~~~----~~~p~~~~-~~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~ 601 (662)
+...|++.+|.+.|...++. .+.|+-.. ++.++...|++++|..+|..+++..++.. +..+..++.++.+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 33444455555555555441 12222122 23344455555555555555554433322 4445556666666666
Q ss_pred HHHHHHHHHHHHHc
Q 006071 602 TLNAYSILFKIMEK 615 (662)
Q Consensus 602 ~~~A~~~~~~~~~~ 615 (662)
.++|...|++..++
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666666665554
No 233
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.41 E-value=0.81 Score=42.60 Aligned_cols=91 Identities=19% Similarity=0.047 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCCCcc-----ccHHHHHHHHHhcCCh---hHHHHHHHHHHhcCCCCHHHHHHHHHH
Q 006071 352 MYDRAIKLLDKLVEKEIILRPQSTLDMEA-----SSYNPMIQHLCHNGQT---GKAEIFFRQLMKKGVLDPVAFNNLIRG 423 (662)
Q Consensus 352 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~ 423 (662)
+++.|..++++..+.-..+.......++. .++..++.++...+.. ++|..+++.+....+..+.++..-+..
T Consensus 51 ~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~i 130 (278)
T PF08631_consen 51 KYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEI 130 (278)
T ss_pred ChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 77777777777654311000111111221 2333444445444432 234444444443334444455444555
Q ss_pred HHhcCChhHHHHHHHHHhh
Q 006071 424 HSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 424 ~~~~~~~~~a~~~~~~~~~ 442 (662)
+.+.++.+.+.+.+..|..
T Consensus 131 l~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 131 LLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HhccCChhHHHHHHHHHHH
Confidence 5555555666666655555
No 234
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.40 E-value=1.5 Score=45.54 Aligned_cols=178 Identities=12% Similarity=0.112 Sum_probs=118.0
Q ss_pred ChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHH----hHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHH
Q 006071 22 DHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRE----THLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVL 97 (662)
Q Consensus 22 ~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 97 (662)
+....+.++.+..-++-|+.+-+.- ..++. .....+.-+.+.|++++|.+.|-+.+.. +.| ..+
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~V 403 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEV 403 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHH
Confidence 4555666777788888888877643 23333 4445556667899999999888776642 222 234
Q ss_pred HHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006071 98 IESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKL 177 (662)
Q Consensus 98 ~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 177 (662)
+.-|....+..+....++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+..- .|.. ..-....+..+.+.+-.
T Consensus 404 i~kfLdaq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl 479 (933)
T KOG2114|consen 404 IKKFLDAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYL 479 (933)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChH
Confidence 5556666677777788888888886 444555779999999999998877766653 2221 11234566677777777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 178 ETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
++|..+-..... +......++ -..+++++|.+.+..+.
T Consensus 480 ~~a~~LA~k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 480 DEAELLATKFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred HHHHHHHHHhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 877776555443 333334443 34688999999888764
No 235
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.39 E-value=0.39 Score=39.25 Aligned_cols=125 Identities=14% Similarity=0.144 Sum_probs=78.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH----H--HHHHHhccCCH
Q 006071 495 FEDGRVQTASRVMKSMVEKGVKENLD-LVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD----S--LLSVLSEKGKT 567 (662)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~----~--~~~~~~~~g~~ 567 (662)
...+..++|..-|..+.+.|...-+. ..-.......+.|+..+|+..|+++-.....|... . -..++..+|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 45566777777777777765442111 11234445667788888888888877655555422 1 23455678888
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT 619 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 619 (662)
++.....+.....+.+..-..-..|+-+-++.|++.+|.+.|.++......|
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 8888777744333222222233467777788999999999998888765544
No 236
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.38 E-value=0.74 Score=41.83 Aligned_cols=222 Identities=18% Similarity=0.101 Sum_probs=136.4
Q ss_pred CChhHHHHHHHHHHhcCCC--CHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHHHHHHHHHhcCChHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVL--DPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESYLRKGEPADAKT 470 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~ 470 (662)
+....+...+......... ...........+...+++..+...+...... ........+......+...+++..+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444445555555544432 3566667777777778888877777776542 223455666667777777777888888
Q ss_pred HHHHHHHcCCCCcHHhHHHHHH-HHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 471 ALDSMIEDGHSPASSLFRSVME-SLFEDGRVQTASRVMKSMVEKGV--KENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+.........+ ......... .+...|+++.+...++....... ......+......+...++.++++..+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 888777543222 122222222 57778888888888888755322 12233333344446677788888888887776
Q ss_pred CCCC--CC-HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 548 SGSV--PN-FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 548 ~~~~--p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.... +. ...+...+...++++.|...+..++...+. ....+..+...+...|..+++...+.+......
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELDP 267 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 2222 11 334555666677888888888877776433 233344555666666778888888888776644
No 237
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.37 E-value=0.2 Score=50.49 Aligned_cols=101 Identities=14% Similarity=0.062 Sum_probs=50.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHH----HHHHHhccCCHHHHHHHHHHHhcCCCC---CChhhHHHHHHHHHhcCCHHHHH
Q 006071 534 HVEEALGRIDLMMQSGSVPNFDS----LLSVLSEKGKTIAAVKLLDFCLGRDCI---IDLASYEKVLDALLAAGKTLNAY 606 (662)
Q Consensus 534 ~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 606 (662)
..+.|.++++.+.+ .-|+..- -+..+...|+.++|++.+++++..... ..-..+.-+++++.-.++|++|.
T Consensus 248 ~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 45566666666655 3333211 122333456666666666655542111 11222335666666677777777
Q ss_pred HHHHHHHHcCCCCcHhhHHH-HHHHHHhcCCc
Q 006071 607 SILFKIMEKGGVTDWKSSDK-LIAGLNQEGNT 637 (662)
Q Consensus 607 ~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~ 637 (662)
+.+.++.+... ++-..|.. ...|+...|+.
T Consensus 326 ~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 326 EYFLRLLKESK-WSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred HHHHHHHhccc-cHHHHHHHHHHHHHHhhccc
Confidence 77766666422 22222332 33335556666
No 238
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.35 E-value=0.19 Score=45.80 Aligned_cols=120 Identities=13% Similarity=0.004 Sum_probs=54.8
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC-CCCCCHHHHHH--HHHHHHhcC
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK-GVQWDEDMFEV--LIESYGKKG 105 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~--l~~~~~~~g 105 (662)
++...|+..+|-..++.+++.. |.+.-++...=.+|.-.|+...-...++++... .....-.+|.. +.-++..+|
T Consensus 112 i~~~~g~~h~a~~~wdklL~d~--PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g 189 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDDY--PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECG 189 (491)
T ss_pred HhhccccccHHHHHHHHHHHhC--chhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhc
Confidence 3444555555555555555543 555555555555555555555555555554432 11111111111 112223445
Q ss_pred ChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHH
Q 006071 106 IVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNK 151 (662)
Q Consensus 106 ~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 151 (662)
-+++|.+.-++..+.+ +.|..+..+...++--.|++.++.++..+
T Consensus 190 ~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 190 IYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred cchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 5555555555554433 23344444444444455555555554433
No 239
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.34 E-value=0.03 Score=46.22 Aligned_cols=116 Identities=22% Similarity=0.248 Sum_probs=67.6
Q ss_pred HhcCCCHHHHHHHHHHHHHcC--CCCCCHHhHHHHHHHHHhcCChH-HHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 30 LHGAKNSEHALQFFRWVERAG--LFNHDRETHLKMIEILGRVGKLN-HARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
....++.+.+.+.++.+.... ++-++... ..|- .....++.. -..+...++..+...|+
T Consensus 16 ~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-----------~~W~~~~r~~l~~~-------~~~~~~~l~~~~~~~~~ 77 (146)
T PF03704_consen 16 AARAGDPEEAIELLEEALALYRGDFLPDLDD-----------EEWVEPERERLREL-------YLDALERLAEALLEAGD 77 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-----------STTHHHHHHHHHHH-------HHHHHHHHHHHHHHTT-
T ss_pred HHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-----------cHHHHHHHHHHHHH-------HHHHHHHHHHHHHhccC
Confidence 346778899999998887652 22222111 1111 111122221 12355566677778888
Q ss_pred hhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCcCHHHH
Q 006071 107 VQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLS-----EGIEPTRHTY 164 (662)
Q Consensus 107 ~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~ 164 (662)
++.|..+.+.+.... |.+...|..+|.++...|+...|.+.|+.+.. .|+.|+..+-
T Consensus 78 ~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 78 YEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 888888888887765 45677888888888888888888888877643 3777776654
No 240
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.33 E-value=0.013 Score=41.97 Aligned_cols=60 Identities=18% Similarity=0.221 Sum_probs=27.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEK----GVK-EN-LDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
++.+...|...|++++|+..|++.++. |.. |. ..++..+..++...|++++|++++++..
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444455555555555555554432 111 11 2334445555555555555555555443
No 241
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.30 E-value=0.17 Score=40.34 Aligned_cols=65 Identities=15% Similarity=0.084 Sum_probs=33.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh-CCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQ-SGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASY 589 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 589 (662)
-+....+.|++++|++.|+.+.. .+..|- .-.++.++.+.|++++|+..+++.++..|......|
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdY 85 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDY 85 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccH
Confidence 33444555666666666666554 222221 112455555666666666666666665554443333
No 242
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.084 Score=49.58 Aligned_cols=93 Identities=17% Similarity=0.038 Sum_probs=50.8
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcC
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEG 635 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 635 (662)
.++-.+.+.+++.+|++..++++..++.+.-..| .-+.+|...|+++.|+..|+++++..+.+ -..-+.|+.+-.+..
T Consensus 262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALy-RrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~k~~ 339 (397)
T KOG0543|consen 262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALY-RRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQKIR 339 (397)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHHHHH
Confidence 3445555667777777777777776543333333 56777777777777777777777654322 222234444444433
Q ss_pred Ccchh--HHHHHHhhhh
Q 006071 636 NTKQA--DILSRMIRGE 650 (662)
Q Consensus 636 ~~~~a--~~~~~~~~~~ 650 (662)
+..+. +....|+.+.
T Consensus 340 ~~~~kekk~y~~mF~k~ 356 (397)
T KOG0543|consen 340 EYEEKEKKMYANMFAKL 356 (397)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 33333 3334444433
No 243
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.26 E-value=1.5 Score=43.92 Aligned_cols=129 Identities=8% Similarity=0.079 Sum_probs=63.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006071 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV-VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGY 241 (662)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 241 (662)
.++.++.---...+.+.+..+++.+... .|.. .-|......-.+.|..+.+.++|++-... ++.+...|......+
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~ 123 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFL 123 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 3444443333333445555555555543 2232 23444444445566666666666665542 444555555444433
Q ss_pred H-hcCCHHHHHHHHHHHhhC-CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006071 242 V-AVERADDALRIFDEMKSF-DVK-PNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (662)
Q Consensus 242 ~-~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 294 (662)
. ..|+.+...+.|+..... |.. -+...|...+..-...+++.....+++++++
T Consensus 124 ~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 124 KNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred hccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 2 345555555555555432 211 1233455555555555666666666666655
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.25 E-value=0.14 Score=46.58 Aligned_cols=153 Identities=14% Similarity=0.015 Sum_probs=110.5
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCHHhHHHHHHHHHhcCChHHH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR---GVPRDADAYICLIESYLRKGEPADA 468 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a 468 (662)
..|...+|...++++.+..|.|..++...-++|...|+.+.-...++++... ++|.....-..+.-++..+|-+++|
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 4577888888899999988999999999999999999999988888888754 2222233334555667789999999
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 006071 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK---GVKENLDLVAKILEALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 545 (662)
.+..++..+-+ +-|......+...+...|++.++.++..+-... +.-.-...|-...-.+...+.++.|+++|++-
T Consensus 195 Ek~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 195 EKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 99998887643 234555566677778889999999888765432 11111223445556677778999999988743
No 245
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.18 E-value=1.2 Score=42.13 Aligned_cols=108 Identities=18% Similarity=0.169 Sum_probs=77.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
+.+..+.-+...|+...|.++..+. . -|+..-|...+.+++..++|++-..+... ++ ++..|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--kK----sPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--KK----SPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--CC----CCCChHHHHHHHH
Confidence 4455566677788888887776665 2 37888888888899999998877765432 11 2344777888888
Q ss_pred hCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHH
Q 006071 531 MRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLD 575 (662)
Q Consensus 531 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~ 575 (662)
..|+..+|..++.++ |+ ..-+..|.+.|++.+|.+..-
T Consensus 249 ~~~~~~eA~~yI~k~------~~-~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI------PD-EERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HCCCHHHHHHHHHhC------Ch-HHHHHHHHHCCCHHHHHHHHH
Confidence 889988888887762 23 566777788888888877643
No 246
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=96.18 E-value=0.5 Score=38.60 Aligned_cols=48 Identities=13% Similarity=0.220 Sum_probs=26.2
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhc
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRV 69 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (662)
..+...+...+...+.+.....+++++...+ +.++..++.++..|++.
T Consensus 7 ~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 7 PIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKY 54 (140)
T ss_pred cCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHH
Confidence 3344555555555556666666666655554 34555555555555543
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.13 E-value=0.32 Score=49.04 Aligned_cols=142 Identities=13% Similarity=0.084 Sum_probs=66.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC-CCCCCHHhHHHHHHHH------H----hcCChHHH
Q 006071 400 EIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR-GVPRDADAYICLIESY------L----RKGEPADA 468 (662)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~------~----~~~~~~~a 468 (662)
.-+|.-+...-| ..+..++....-.||-+.+++.+....+. ++. .+..--.|+..| + ...+.+.|
T Consensus 177 ~G~f~L~lSlLP---p~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~-~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a 252 (468)
T PF10300_consen 177 FGLFNLVLSLLP---PKVLKLLSFVGFSGDRELGLRLLWEASKSENIR-SPLAALVLLWYHLVVPSFLGIDGEDVPLEEA 252 (468)
T ss_pred HHHHHHHHHhCC---HHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcc-hHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence 344555555433 34556666667777888888777776553 222 222222222111 1 12334555
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHH-HHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 006071 469 KTALDSMIEDGHSPASSLFRSVM-ESLFEDGRVQTASRVMKSMVEKG---VKENLDLVAKILEALLMRGHVEEALGRIDL 544 (662)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 544 (662)
.++++.+.+. -|+...|...- ..+...|+.++|++.|+...... .+.....+--++.++.-.++|++|.+.+..
T Consensus 253 ~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 253 EELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHH
Confidence 5666655542 24443332222 23444566666666666544210 011112223344445555555555555555
Q ss_pred HHh
Q 006071 545 MMQ 547 (662)
Q Consensus 545 ~~~ 547 (662)
+.+
T Consensus 331 L~~ 333 (468)
T PF10300_consen 331 LLK 333 (468)
T ss_pred HHh
Confidence 544
No 248
>PRK11906 transcriptional regulator; Provisional
Probab=96.13 E-value=0.43 Score=46.25 Aligned_cols=111 Identities=13% Similarity=0.010 Sum_probs=63.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH----HHHHHhccCCHHHHHHHH
Q 006071 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS----LLSVLSEKGKTIAAVKLL 574 (662)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~----~~~~~~~~g~~~~A~~~~ 574 (662)
+..+|.+..++.++.+.. |......+..++...|+++.|...|++... +.|+... .+..+.-+|+.++|.+.+
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 345566666666666555 555555666666666777777777777765 5666432 223334567777777777
Q ss_pred HHHhcCCCCCChhhHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 006071 575 DFCLGRDCIIDLASYE-KVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 575 ~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
+++++.+|---..... ..++.|+. ...++|+.++-+-.
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 434 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNIKLYYKET 434 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcC-CchhhhHHHHhhcc
Confidence 7777765433222222 22223333 34566666665533
No 249
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.10 E-value=0.79 Score=42.44 Aligned_cols=130 Identities=15% Similarity=0.049 Sum_probs=70.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHhhC-----CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCCcHH--
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMGRR-----GVPRDADAYICLIESYLRKGEPADAKTALDSMIED----GHSPASS-- 485 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~-- 485 (662)
..++..++...+.++++++.|+...+. +.......+..|...|.+..++++|..+..+..+. ++..-..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 344556666666777777777665541 11112345667777777777777776665554421 2111111
Q ss_pred ---hHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 486 ---LFRSVMESLFEDGRVQTASRVMKSMVEK----GVKE-NLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 486 ---~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
....+.-++...|...+|.+..++..+. |-.+ -......+...|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 1222333556667777777766666543 2221 12233456667777777777776665443
No 250
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.08 E-value=0.098 Score=41.66 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=68.8
Q ss_pred HHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHH--hcC
Q 006071 560 VLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLN--QEG 635 (662)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g 635 (662)
...+.|++++|++.|+.....-|... ......++.+|++.|++++|+..+++.++..+...-..|.....++. ...
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~ 98 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD 98 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence 34578999999999997776643332 44555799999999999999999999998655433333333333322 221
Q ss_pred C---------------cchh-HHHHHHhhhhccccchhhhhcC
Q 006071 636 N---------------TKQA-DILSRMIRGEMSRGSQKEKKQK 662 (662)
Q Consensus 636 ~---------------~~~a-~~~~~~~~~~~~~~~~~~~~~~ 662 (662)
. ..+| ..+.+.+..-|++.-..+.++|
T Consensus 99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~~R 141 (142)
T PF13512_consen 99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADARKR 141 (142)
T ss_pred hhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHHhc
Confidence 1 4455 5667777777777666555543
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.98 E-value=0.67 Score=38.99 Aligned_cols=91 Identities=22% Similarity=0.177 Sum_probs=53.8
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhc
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNFD-----SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAA 599 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 599 (662)
+...+...|++++|+.-++..+..+.+.+.. .+...+...|.+++|+..++...+.+. .+......+++|...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w--~~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW--AAIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH--HHHHHHHhhhHHHHc
Confidence 3455666777777777666665433333322 234455567777777777763333221 223344567777777
Q ss_pred CCHHHHHHHHHHHHHcCC
Q 006071 600 GKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 600 g~~~~A~~~~~~~~~~~~ 617 (662)
|+.++|..-|++.+....
T Consensus 173 g~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 173 GDKQEARAAYEKALESDA 190 (207)
T ss_pred CchHHHHHHHHHHHHccC
Confidence 777777777777777653
No 252
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.94 E-value=0.13 Score=40.56 Aligned_cols=87 Identities=11% Similarity=0.075 Sum_probs=43.8
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhh-------ccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 006071 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEII-------LRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKK 409 (662)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 409 (662)
..++..++.++++.|+.+....+++..-..+.. ..+.....|+..+..+++.+|+..+++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 345556666666666666666666544221110 0133444455555555555555555555555555555444
Q ss_pred C--CCCHHHHHHHHHH
Q 006071 410 G--VLDPVAFNNLIRG 423 (662)
Q Consensus 410 ~--~~~~~~~~~l~~~ 423 (662)
- +.+..+|..|+.-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 3 3334444444443
No 253
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.91 E-value=0.4 Score=40.24 Aligned_cols=130 Identities=15% Similarity=0.201 Sum_probs=84.8
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--HHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF--RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDL--VAKI 525 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l 525 (662)
..|..++.... .+.+ +.....+.+...+-......+ ..+...+...|++++|...++..+....+.+... --.|
T Consensus 55 ~~Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRL 132 (207)
T COG2976 55 AQYQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRL 132 (207)
T ss_pred HHHHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHH
Confidence 44555555443 3334 455555566543212222222 2334467889999999999998875522222222 2357
Q ss_pred HHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHhccCCHHHHHHHHHHHhcCC
Q 006071 526 LEALLMRGHVEEALGRIDLMMQSGSVPNFD-SLLSVLSEKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 526 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~g~~~~A~~~~~~~~~~~ 581 (662)
.+.....|.+|+|+.+++...+.+..+-.. .-++++...|+.++|+.-|++++..+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 788899999999999998886655444432 35678889999999999999999986
No 254
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.81 E-value=0.58 Score=38.32 Aligned_cols=137 Identities=13% Similarity=0.143 Sum_probs=78.8
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH-hHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDED-MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK-SYD 130 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-~~~ 130 (662)
..+...|...++. .+.+..++|..-|..+.+.|...-+. ............|+...|...|+++-.....|... ...
T Consensus 56 s~sgd~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~A 134 (221)
T COG4649 56 SKSGDAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLA 134 (221)
T ss_pred ccchHHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHH
Confidence 3455566555553 45666777777777777766542222 22233344566777777777777776543333322 111
Q ss_pred HH--HHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006071 131 AL--FKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 131 ~l--~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
.| .-.+..+|.++......+-+...+-+.-...-..|.-+-.+.|++..|.+.|..+...
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 11 2234567777777777766654443333334455555556778888888888777654
No 255
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.77 E-value=3.1 Score=45.31 Aligned_cols=189 Identities=15% Similarity=0.112 Sum_probs=88.3
Q ss_pred HhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 006071 425 SKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTAS 504 (662)
Q Consensus 425 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 504 (662)
..+.|+.+-+-+++++.+. +++..-| .|+.| .++++.|+.-+.++- ...|...++.-.++|.+.+|.
T Consensus 862 ~SqkDPkEyLP~L~el~~m--~~~~rkF--~ID~~--L~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL 928 (1265)
T KOG1920|consen 862 KSQKDPKEYLPFLNELKKM--ETLLRKF--KIDDY--LKRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEAL 928 (1265)
T ss_pred HhccChHHHHHHHHHHhhc--hhhhhhe--eHHHH--HHHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhh
Confidence 3455666666666665531 1221111 12222 245666666555542 112333344445556666665
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCC
Q 006071 505 RVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCII 584 (662)
Q Consensus 505 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~ 584 (662)
.++..-.+. -...|.+.+.-+.+.+.+++|.-+|+..-+ ....+.++..+|++.+|..+..+..... .-
T Consensus 929 ~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de 997 (1265)
T KOG1920|consen 929 ALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK------LEKALKAYKECGDWREALSLAAQLSEGK-DE 997 (1265)
T ss_pred heeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HH
Confidence 554432222 223344444555555566665555543321 2334445555666666666655332210 00
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHHHH
Q 006071 585 DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADILSR 645 (662)
Q Consensus 585 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (662)
-...-..|+.-+...|++-+|.+++....... ..-+..|++.-.|++|.++..
T Consensus 998 ~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~--------~~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen 998 LVILAEELVSRLVEQRKHYEAAKILLEYLSDP--------EEAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred HHHHHHHHHHHHHHcccchhHHHHHHHHhcCH--------HHHHHHHhhHhHHHHHHHHHH
Confidence 01111345556666667777666665544321 124445555555666644433
No 256
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.75 E-value=0.78 Score=44.70 Aligned_cols=165 Identities=10% Similarity=0.097 Sum_probs=86.4
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHh
Q 006071 24 NLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGK 103 (662)
Q Consensus 24 ~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (662)
..++.---+.++++.-++.-+++++.+ |..+.+|..+.+- ......++.+++++..+.|- ..+. +
T Consensus 172 q~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE----~~lg-------~ 236 (539)
T PF04184_consen 172 QEIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILLAEE--EASTIVEAEELLRQAVKAGE----ASLG-------K 236 (539)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHH----Hhhc-------h
Confidence 334444445667777777777777665 4555666555532 23346777777777665321 1110 0
Q ss_pred cCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHH
Q 006071 104 KGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE-PTRHTYNVMLWGFFLSLKLETAIR 182 (662)
Q Consensus 104 ~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~ 182 (662)
....+..-..++....+...+-..+-..+..++-+.|+.++|++.|.+|.+.... .+......++.++...+.+.++..
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 0000111111222222222222333344555666778888888888887664322 133455667777777888888887
Q ss_pred HHHHHHhCCCCCC-HHHHHHHH
Q 006071 183 FFEDMKSRGISLD-VVTYNTMI 203 (662)
Q Consensus 183 ~~~~~~~~~~~~~-~~~~~~ll 203 (662)
++.+.-+...+.+ ..+|+..+
T Consensus 317 lL~kYdDi~lpkSAti~YTaAL 338 (539)
T PF04184_consen 317 LLAKYDDISLPKSATICYTAAL 338 (539)
T ss_pred HHHHhccccCCchHHHHHHHHH
Confidence 7777654332222 33455443
No 257
>PRK11906 transcriptional regulator; Provisional
Probab=95.75 E-value=1.1 Score=43.58 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=51.9
Q ss_pred ChhHHHHHHHHHH---hcCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 395 QTGKAEIFFRQLM---KKGVLDPVAFNNLIRGHSKE---------GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 395 ~~~~a~~~~~~~~---~~~~~~~~~~~~l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
..+.|..+|.+.. ...|.....|..+..++... .+..+|.++.+...+.+. .|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhh
Confidence 4556777888888 43344455555554443321 122233344444444332 2444444444444444
Q ss_pred CChHHHHHHHHHHHHcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 463 GEPADAKTALDSMIEDGHSPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
++++.|...|++.... .|| ..+|......+...|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 4444455555444432 233 222333333333444444554444444433
No 258
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.72 E-value=0.18 Score=39.85 Aligned_cols=95 Identities=17% Similarity=0.219 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHH
Q 006071 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMES 493 (662)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 493 (662)
..++..++.++++.|+++....+++..-. +.++... ..+. --......|+..++.+++.+
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHHH
Confidence 45566666667777776666666654432 2211100 0000 01122456777777777777
Q ss_pred HHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHH
Q 006071 494 LFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEA 528 (662)
Q Consensus 494 ~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~ 528 (662)
|+..|++..|+++++...+. +++.+...|..|+.-
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77777777777777777665 666566666666543
No 259
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.67 E-value=0.32 Score=45.86 Aligned_cols=61 Identities=8% Similarity=-0.141 Sum_probs=36.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
+..+..++.+.+++..|+......+...++|....-.-..++...|+++.|+..|+.+.+.
T Consensus 260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3445555556666666666666666666666666655666666666666666666666554
No 260
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.58 E-value=0.82 Score=35.56 Aligned_cols=61 Identities=20% Similarity=0.342 Sum_probs=29.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCC
Q 006071 385 PMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGV 445 (662)
Q Consensus 385 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 445 (662)
..+......|..+.-.+++..+.+.+.+++...-.+..+|.+.|+..++.+++.++-+.|+
T Consensus 91 ~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 91 LALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 3344445555555555555555554455555555666666666666666666655555543
No 261
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.47 E-value=0.35 Score=37.35 Aligned_cols=90 Identities=17% Similarity=0.168 Sum_probs=58.9
Q ss_pred HHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH---HhHHHHHHHHHhcCChH
Q 006071 390 LCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA---DAYICLIESYLRKGEPA 466 (662)
Q Consensus 390 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~ 466 (662)
.+..|+.+.|++.|.+.+...|..+.+||.-.+++.-.|+.++|++-+++..+..-+.+. ..|..-...|...|+-+
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd 132 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD 132 (175)
T ss_pred HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence 456677788888888777777777777887777777778888877777777663211122 23333444555666666
Q ss_pred HHHHHHHHHHHcC
Q 006071 467 DAKTALDSMIEDG 479 (662)
Q Consensus 467 ~a~~~~~~~~~~~ 479 (662)
.|..-|+..-+.|
T Consensus 133 ~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 133 AARADFEAAAQLG 145 (175)
T ss_pred HHHHhHHHHHHhC
Confidence 6666666665544
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.40 E-value=1.2 Score=38.92 Aligned_cols=21 Identities=5% Similarity=-0.078 Sum_probs=10.7
Q ss_pred HHHHHhcCChhHHHHHHHHHh
Q 006071 421 IRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~ 441 (662)
..+|....++++|...+.+..
T Consensus 38 AvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 38 AVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHhhccHHHHHHHHHHHH
Confidence 344455555555555554443
No 263
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.37 E-value=0.2 Score=48.33 Aligned_cols=66 Identities=6% Similarity=-0.047 Sum_probs=42.3
Q ss_pred CCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006071 53 NHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDE---DMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 53 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 119 (662)
|.++..|..+..+|...|++++|...|++.+...+. +. .+|..+..+|...|+.++|+..++++.+
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd-~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPN-PDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345566666777777777777777777766655433 22 2466666677777777777777776665
No 264
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.36 E-value=5.4 Score=43.61 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCcchhHHHHHHh
Q 006071 625 DKLIAGLNQEGNTKQADILSRMI 647 (662)
Q Consensus 625 ~~l~~~~~~~g~~~~a~~~~~~~ 647 (662)
.+|+.++...|..+.|..+.+..
T Consensus 1188 ~~Ll~~l~~~g~~eqa~~Lq~~f 1210 (1265)
T KOG1920|consen 1188 KRLLEVLVTFGMDEQARALQKAF 1210 (1265)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHH
Confidence 35999999999999996554443
No 265
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.36 E-value=1.2 Score=36.24 Aligned_cols=126 Identities=16% Similarity=0.158 Sum_probs=77.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhc
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRK 462 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 462 (662)
...++..+...+.......+++.+...++.++...+.++..|++.+ ..+..+.++. . .+......++..|.+.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 4556667777777888888888887776667777888888887653 3444444442 1 2333344567777777
Q ss_pred CChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006071 463 GEPADAKTALDSMIEDGHSPASSLFRSVMESLFED-GRVQTASRVMKSMVEKGVKENLDLVAKILEALL 530 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (662)
+-++++..++.++.. +...+..+... ++++.|.+++.+. .+...|..++..+.
T Consensus 83 ~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 83 KLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred CcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 777777777776521 12222333333 6777777766652 15556666665554
No 266
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.24 E-value=1.1 Score=34.91 Aligned_cols=137 Identities=15% Similarity=0.245 Sum_probs=69.9
Q ss_pred hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc-cccHHHHHHHHHh
Q 006071 314 KSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDME-ASSYNPMIQHLCH 392 (662)
Q Consensus 314 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~ 392 (662)
-.|..++..++..+... +.+..-+|.++--....-+-+-..++++.+-... ..+ -.....++.+++.
T Consensus 14 ldG~V~qGveii~k~v~---Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiF---------Dis~C~NlKrVi~C~~~ 81 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVN---SSNIKEYNWVICNIIDAADCDYVVETLDSIGKIF---------DISKCGNLKRVIECYAK 81 (161)
T ss_dssp HTT-HHHHHHHHHHHHH---HS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS----------GGG-S-THHHHHHHHH
T ss_pred HhchHHHHHHHHHHHcC---cCCccccceeeeecchhhchhHHHHHHHHHhhhc---------CchhhcchHHHHHHHHH
Confidence 34666666666666655 2344555555555444445555555555541110 000 0112344444444
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 006071 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 472 (662)
.+.. .......+..+...|.-+.-.+++..+.+. -.+++.....+..+|.+.|+..++.+++
T Consensus 82 ~n~~-----------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell 143 (161)
T PF09205_consen 82 RNKL-----------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELL 143 (161)
T ss_dssp TT--------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred hcch-----------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHH
Confidence 4322 233444556666777777777777777652 3567777777788888888888888887
Q ss_pred HHHHHcCC
Q 006071 473 DSMIEDGH 480 (662)
Q Consensus 473 ~~~~~~~~ 480 (662)
.++-+.|+
T Consensus 144 ~~ACekG~ 151 (161)
T PF09205_consen 144 KEACEKGL 151 (161)
T ss_dssp HHHHHTT-
T ss_pred HHHHHhch
Confidence 77777664
No 267
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.20 E-value=2 Score=37.66 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHH
Q 006071 304 VFMKLLGVQCKSGHLNAAADVLKAM 328 (662)
Q Consensus 304 ~~~~l~~~~~~~g~~~~a~~~~~~~ 328 (662)
.+..-...|..+|..+.|-..++..
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKA 117 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKA 117 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHH
Confidence 3344444455555555444444443
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.14 E-value=0.71 Score=45.83 Aligned_cols=97 Identities=11% Similarity=0.119 Sum_probs=41.8
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHH
Q 006071 173 LSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALR 252 (662)
Q Consensus 173 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 252 (662)
+.|+++.|.++..+ ..+...|..|.+.....|+++-|++.|.+... |..|+-.|.-.|+.+.-.+
T Consensus 330 ~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 330 QLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred hcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44555555444322 12444555555555555555555555544321 2334444445555544444
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 006071 253 IFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLR 290 (662)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 290 (662)
+.+.....|- ++..+.++.-.|+.+++.+++.
T Consensus 395 l~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 395 LAKIAEERGD------INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHH
Confidence 4444443331 2333333334455555544443
No 269
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.12 E-value=0.054 Score=33.37 Aligned_cols=13 Identities=15% Similarity=0.294 Sum_probs=4.6
Q ss_pred CCHHHHHHHHHHH
Q 006071 34 KNSEHALQFFRWV 46 (662)
Q Consensus 34 ~~~~~A~~~~~~~ 46 (662)
|++++|.+.|+.+
T Consensus 15 G~~~~A~~~~~~~ 27 (44)
T PF13428_consen 15 GQPDEAERLLRRA 27 (44)
T ss_pred CCHHHHHHHHHHH
Confidence 3333333333333
No 270
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.03 E-value=2.1 Score=37.16 Aligned_cols=88 Identities=16% Similarity=0.124 Sum_probs=38.1
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCChhhHH------HHHHHHHhcCCHHHHHHHHHHHHHcCCC-CcHhhHHHHHHHHHhcC
Q 006071 563 EKGKTIAAVKLLDFCLGRDCIIDLASYE------KVLDALLAAGKTLNAYSILFKIMEKGGV-TDWKSSDKLIAGLNQEG 635 (662)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 635 (662)
..+++.+|+.+|++.......++..-|. ..+-+++..++.-.+...+++..+..+. .+.... .++..+...-
T Consensus 166 ~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREc-kflk~L~~ai 244 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSREC-KFLKDLLDAI 244 (288)
T ss_pred HHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHH-HHHHHHHHHH
Confidence 3466677777776666554444322221 1111222234444444555554443222 122222 2444444443
Q ss_pred CcchhHHHHHHhhhhc
Q 006071 636 NTKQADILSRMIRGEM 651 (662)
Q Consensus 636 ~~~~a~~~~~~~~~~~ 651 (662)
+-++.+.+.+..+..+
T Consensus 245 eE~d~e~fte~vkefD 260 (288)
T KOG1586|consen 245 EEQDIEKFTEVVKEFD 260 (288)
T ss_pred hhhhHHHHHHHHHhhh
Confidence 4444455555554333
No 271
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.99 E-value=1 Score=44.71 Aligned_cols=104 Identities=13% Similarity=0.080 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh
Q 006071 164 YNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVA 243 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 243 (662)
.+.++..+-+.|.++.|+++...-. .-.+...+.|+++.|.++.++. ++...|..|......
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL~ 359 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEIAKEL------DDPEKWKQLGDEALR 359 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHH
Confidence 4445555555555555555432211 1123334455555555443322 244455555555555
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006071 244 VERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVE 294 (662)
Q Consensus 244 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 294 (662)
.|+++-|.+.|.+... |..++-.|...|+.+...++.+....
T Consensus 360 ~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 360 QGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp TTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555555544331 23333344444555444444444433
No 272
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=94.90 E-value=4.2 Score=39.85 Aligned_cols=93 Identities=15% Similarity=0.165 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHH-HhcCChhHHHHHHH
Q 006071 37 EHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESY-GKKGIVQESVKIFD 115 (662)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~ 115 (662)
..-..+|+.+..+ ++.|+..|...+..+.+.+.+.+...+|..|....+. ++..|....... -..-+++.|..+|.
T Consensus 88 ~rIv~lyr~at~r--f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~-~~dLWI~aA~wefe~n~ni~saRalfl 164 (568)
T KOG2396|consen 88 NRIVFLYRRATNR--FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPN-NPDLWIYAAKWEFEINLNIESARALFL 164 (568)
T ss_pred HHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CchhHHhhhhhHHhhccchHHHHHHHH
Confidence 4556677777666 4778999999998888888888999999888876543 566665554433 33344888888888
Q ss_pred HHHHcCCCcCHHhHHHHH
Q 006071 116 IMKQLGVERSVKSYDALF 133 (662)
Q Consensus 116 ~~~~~g~~~~~~~~~~l~ 133 (662)
+..+.+ +.++..|-...
T Consensus 165 rgLR~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 165 RGLRFN-PDSPKLWKEYF 181 (568)
T ss_pred HHhhcC-CCChHHHHHHH
Confidence 887754 33444444433
No 273
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.84 E-value=0.084 Score=32.50 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=22.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLI 421 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 421 (662)
+..+...|...|++++|..+|+++.+..|.++..+..+.
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 445555566666666666666666666655555555443
No 274
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.62 E-value=6.4 Score=40.69 Aligned_cols=104 Identities=16% Similarity=0.148 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFD---SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALL 597 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~---~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 597 (662)
+.+.-+.-+...|+..+|.++-.+. -.|+-. --+.+|...+++++-.++.+ . ..+|..|.-...++.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~F----kipdKr~~wLk~~aLa~~~kweeLekfAk---s---kksPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDF----KIPDKRLWWLKLTALADIKKWEELEKFAK---S---KKSPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhc----CCcchhhHHHHHHHHHhhhhHHHHHHHHh---c---cCCCCCchhHHHHHH
Confidence 3445556677888888888776554 344422 22446677888888777665 1 223666777788889
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCCcchhHHH
Q 006071 598 AAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGNTKQADIL 643 (662)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 643 (662)
+.|+.+||.+++-++.... ..+.+|...|++.+|..+
T Consensus 756 ~~~n~~EA~KYiprv~~l~---------ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGGLQ---------EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hcccHHHHhhhhhccCChH---------HHHHHHHHhccHHHHHHH
Confidence 9999999998887743221 367788888888888443
No 275
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.57 E-value=7.4 Score=41.21 Aligned_cols=186 Identities=10% Similarity=0.063 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHcCCCCCC--HHhHHHHHHHHH-hcCChHHHHHHHHhcccCCCCCCH-----HHHHHHHHHHHhcCChh
Q 006071 37 EHALQFFRWVERAGLFNHD--RETHLKMIEILG-RVGKLNHARCILLDMPKKGVQWDE-----DMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 37 ~~A~~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~ 108 (662)
..|+.-++-+.+...++|. ..+...++.++. ...+++.|+..+++....--.++. .+...++..+.+.+...
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~ 117 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA 117 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence 3456666666644323332 235667777776 678999999999876433222221 12334556666666555
Q ss_pred HHHHHHHHHHHcCCC----cCHHhHHHH-HHHHHHcCChhHHHHHHHHHHhCC---CCcCHHHHHHHHHHHH--hcCCHH
Q 006071 109 ESVKIFDIMKQLGVE----RSVKSYDAL-FKLILRRGRYMMAKRYFNKMLSEG---IEPTRHTYNVMLWGFF--LSLKLE 178 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~----~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~ll~~~~--~~~~~~ 178 (662)
|...++...+.--. +-...+..+ +..+...+++..|.+.++.+.... ..|-..++..++.+.. ..+..+
T Consensus 118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~ 196 (608)
T PF10345_consen 118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD 196 (608)
T ss_pred -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence 88888876653111 112222222 222333478999999998886532 2344455555555544 345566
Q ss_pred HHHHHHHHHHhCC---------CCCCHHHHHHHHHHH--hhcCChHHHHHHHHHHH
Q 006071 179 TAIRFFEDMKSRG---------ISLDVVTYNTMINGY--NRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 179 ~a~~~~~~~~~~~---------~~~~~~~~~~ll~~~--~~~g~~~~a~~~~~~~~ 223 (662)
++.+.++.+.... -.|-..+|..+++.+ ...|++..+...++++.
T Consensus 197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7777776663321 133456677776654 45677767766655543
No 276
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.43 E-value=2.2 Score=34.93 Aligned_cols=51 Identities=14% Similarity=0.053 Sum_probs=21.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 496 EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..++.+++..++..+.-..+. ....-..-...+...|+|.+|+.+++.+.+
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 344555555555544433222 111111122234445555555555555443
No 277
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.19 E-value=0.5 Score=39.68 Aligned_cols=90 Identities=21% Similarity=0.121 Sum_probs=62.6
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCH----HH-----HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNF----DS-----LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDA 595 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~----~~-----~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 595 (662)
=..-+...|++++|..-|...+. .-|.. .+ -+.++.+.++++.|+.-..++++.++..... ....+.+
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kA-l~RRAea 177 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKA-LERRAEA 177 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHH-HHHHHHH
Confidence 34557788899999988888876 23321 11 1224456788888888888888876433322 2345778
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC
Q 006071 596 LLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
|-+..++++|++=|+++++..+
T Consensus 178 yek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCc
Confidence 8888999999999999888754
No 278
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.96 E-value=0.6 Score=41.55 Aligned_cols=104 Identities=15% Similarity=0.249 Sum_probs=51.4
Q ss_pred cCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhh
Q 006071 159 PTRHTYNVMLWGFFL-----SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVIS 233 (662)
Q Consensus 159 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 233 (662)
.|..+|...+..+.. .+.++-....+..|.+.|+..|..+|+.|+..+-+..-.- ..+|+.
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP--~nvfQ~------------ 130 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIP--QNVFQK------------ 130 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccccc--HHHHHH------------
Confidence 344455444444432 2445555555666666677777777777766654322110 001111
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCC
Q 006071 234 YTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGK 281 (662)
Q Consensus 234 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 281 (662)
..-.|-+ +-+=++.++++|...|+.||..+-..++.++.+.+-
T Consensus 131 ---~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 131 ---VFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred ---HHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 1111111 112345666666666666666666666666655443
No 279
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.87 E-value=0.096 Score=29.96 Aligned_cols=32 Identities=9% Similarity=0.122 Sum_probs=25.7
Q ss_pred HHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHH
Q 006071 43 FRWVERAGLFNHDRETHLKMIEILGRVGKLNHAR 76 (662)
Q Consensus 43 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 76 (662)
|+.+++.+ |.++.+|..+..+|...|++++|+
T Consensus 2 y~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 56666766 788888888888888888888875
No 280
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=93.77 E-value=0.083 Score=30.23 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=22.3
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 403 FRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAF 434 (662)
Q Consensus 403 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 434 (662)
|++.++..|.++.+|+.+...|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 45566666777777777777777777777664
No 281
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.73 E-value=0.68 Score=41.25 Aligned_cols=104 Identities=13% Similarity=0.141 Sum_probs=70.6
Q ss_pred CHHHHHHHHHHHhh-----cCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHH
Q 006071 195 DVVTYNTMINGYNR-----FKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTY 269 (662)
Q Consensus 195 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 269 (662)
|..+|...+..+.. .+.++-....++.|.+.|+..|..+|+.|++.+-+.. +.|.. .+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-vf 128 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-VF 128 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-HH
Confidence 56666666666543 4666777777888888888889889988888764322 12221 12
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCCh
Q 006071 270 TALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHL 318 (662)
Q Consensus 270 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 318 (662)
..+...|-+ +-.=+++++++|...|+-| |..+-..++.++.+.+..
T Consensus 129 Q~~F~HYP~--QQ~C~I~vLeqME~hGVmP-dkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 129 QKVFLHYPQ--QQNCAIKVLEQMEWHGVMP-DKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHhhCch--hhhHHHHHHHHHHHcCCCC-chHHHHHHHHHhcccccc
Confidence 222222222 2234789999999999999 999999999999887753
No 282
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.63 E-value=4.4 Score=39.82 Aligned_cols=149 Identities=17% Similarity=0.142 Sum_probs=88.2
Q ss_pred HHHHHHHhhcCCCCChHHHHHHHhc--CCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC
Q 006071 8 TRLQNKIRALVPQFDHNLVYNVLHG--AKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK 85 (662)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 85 (662)
..+..+-+.+..++++..-+-+|.. +....+|.++|+++.+.+. . .+..- ......|. .++....+
T Consensus 186 aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE--~---~lg~s-~~~~~~g~------~~e~~~~R 253 (539)
T PF04184_consen 186 ARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGE--A---SLGKS-QFLQHHGH------FWEAWHRR 253 (539)
T ss_pred HHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHH--H---hhchh-hhhhcccc------hhhhhhcc
Confidence 3344444445555566555555554 4567889999988877541 1 11000 00011111 12222233
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-cCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCc-CHHH
Q 006071 86 GVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVE-RSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEP-TRHT 163 (662)
Q Consensus 86 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~ 163 (662)
+..+-..+-..+..++.+.|+.++|++.|.+|.+.... .+......|+.++...+.+.++..++.+.-....+. -...
T Consensus 254 dt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~ 333 (539)
T PF04184_consen 254 DTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATIC 333 (539)
T ss_pred ccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHH
Confidence 33333455566777788899999999999999764322 234577789999999999999999999975432222 2334
Q ss_pred HHHHH
Q 006071 164 YNVML 168 (662)
Q Consensus 164 ~~~ll 168 (662)
|+..+
T Consensus 334 YTaAL 338 (539)
T PF04184_consen 334 YTAAL 338 (539)
T ss_pred HHHHH
Confidence 55544
No 283
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=93.30 E-value=7 Score=36.44 Aligned_cols=61 Identities=10% Similarity=0.038 Sum_probs=28.1
Q ss_pred HHHHHHHHHhcCCHH---HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006071 164 YNVMLWGFFLSLKLE---TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK 225 (662)
Q Consensus 164 ~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 225 (662)
+..++.++...+..+ +|..+++.+.... +-...++..-+..+.+.++.+.+.+++..|...
T Consensus 87 L~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 87 LRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 344444554444433 3334444443321 112334444445555556666666666666543
No 284
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.29 E-value=2.4 Score=35.83 Aligned_cols=95 Identities=17% Similarity=0.193 Sum_probs=60.6
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCc-----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGHSPA-----SSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLM 531 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 531 (662)
+-+...|++++|..-+...+..- ++. ...|..-..++.+.+.++.|+.-..+.++.++.- ...+..-..+|.+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty-~kAl~RRAeayek 180 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY-EKALERRAEAYEK 180 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh-HHHHHHHHHHHHh
Confidence 34567788888888777777532 221 1223333345677788888888888777776652 2233334556777
Q ss_pred CCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 532 RGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 532 ~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
..++++|++-|+++++ ..|...
T Consensus 181 ~ek~eealeDyKki~E--~dPs~~ 202 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILE--SDPSRR 202 (271)
T ss_pred hhhHHHHHHHHHHHHH--hCcchH
Confidence 7788888888888877 555543
No 285
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.25 E-value=4.3 Score=33.84 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=43.4
Q ss_pred HHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006071 114 FDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGIS 193 (662)
Q Consensus 114 ~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 193 (662)
+..+.+.+++|+...+..+++.+.+.|++..... ++..++-+|.......+-.+. +....+.++--+|.++
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR--- 87 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR--- 87 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH---
Confidence 3444445556666666666666666665433322 233334444443333322221 2223333333333332
Q ss_pred CCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 006071 194 LDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (662)
Q Consensus 194 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 222 (662)
=...+..+++.+...|++-+|.++.+..
T Consensus 88 -L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 -LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred -hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0112334444555555555555555443
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.25 E-value=1.6 Score=37.25 Aligned_cols=91 Identities=14% Similarity=0.114 Sum_probs=41.0
Q ss_pred cCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccC---CCCCCHHH
Q 006071 17 LVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKK---GVQWDEDM 93 (662)
Q Consensus 17 ~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~~ 93 (662)
...+.++.+++-.-.+.|+ +.|+..|-.+...+ .-.++.....++..|. ..+.+++.+++-+.... +-.+|+.+
T Consensus 104 tk~S~dP~llYy~Wsr~~d-~~A~~~fL~~E~~~-~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~ei 180 (203)
T PF11207_consen 104 TKNSQDPYLLYYHWSRFGD-QEALRRFLQLEGTP-ELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEI 180 (203)
T ss_pred HccCCCccHHHHHhhccCc-HHHHHHHHHHcCCC-CCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHH
Confidence 3334444444444444444 44555554444333 2233444444444333 34555555555443321 22345555
Q ss_pred HHHHHHHHHhcCChhHH
Q 006071 94 FEVLIESYGKKGIVQES 110 (662)
Q Consensus 94 ~~~l~~~~~~~g~~~~A 110 (662)
+.+|+..+.+.|+++.|
T Consensus 181 l~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 181 LKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHhcchhhh
Confidence 55555555555555544
No 287
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.12 E-value=0.23 Score=28.84 Aligned_cols=25 Identities=8% Similarity=-0.006 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 589 YEKVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
|..|+.+|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5578888899999999999998854
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.12 E-value=1.2 Score=40.59 Aligned_cols=78 Identities=14% Similarity=0.171 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHHH
Q 006071 127 KSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKS-----RGISLDVVTYNT 201 (662)
Q Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 201 (662)
.++..++..+...|+++.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 355566666666777777777777776653 33566667777777777777777777666654 466666666665
Q ss_pred HHHH
Q 006071 202 MING 205 (662)
Q Consensus 202 ll~~ 205 (662)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5555
No 289
>PRK11619 lytic murein transglycosylase; Provisional
Probab=92.82 E-value=15 Score=38.93 Aligned_cols=316 Identities=9% Similarity=0.062 Sum_probs=137.7
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChH
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (662)
...+.|++..+.++...+...-+ ..-..|..+... ......++....+++- .-.|.....-...+..+.+.+++.
T Consensus 42 ~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~-l~~~~~~ev~~Fl~~~---~~~P~~~~Lr~~~l~~La~~~~w~ 116 (644)
T PRK11619 42 QAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQD-LMNQPAVQVTNFIRAN---PTLPPARSLQSRFVNELARREDWR 116 (644)
T ss_pred HHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhc-cccCCHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHccCHH
Confidence 34567778887777776643221 112223332221 1223455555544432 123333444444555566667776
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHH
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKA 399 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 399 (662)
.....+.. .+.+...--....+....|+.++|......+-..+ ...+..++.++..+.+.|.....
T Consensus 117 ~~~~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g---------~~~p~~cd~l~~~~~~~g~lt~~ 182 (644)
T PRK11619 117 GLLAFSPE-----KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG---------KSLPNACDKLFSVWQQSGKQDPL 182 (644)
T ss_pred HHHHhcCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC---------CCCChHHHHHHHHHHHcCCCCHH
Confidence 65552211 13444444556667777788776766655552111 12344667777777666655443
Q ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh---------CCCCCCHHhHHHHHHHHH--hcCChHH
Q 006071 400 EIFFRQLMKKG-VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR---------RGVPRDADAYICLIESYL--RKGEPAD 467 (662)
Q Consensus 400 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~~~l~~~~~--~~~~~~~ 467 (662)
. ++.++...- ..+......+...+. .+.....+.+..+.. ..++++...-..++-++. ...+.+.
T Consensus 183 d-~w~R~~~al~~~~~~lA~~l~~~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~ 259 (644)
T PRK11619 183 A-YLERIRLAMKAGNTGLVTYLAKQLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAEN 259 (644)
T ss_pred H-HHHHHHHHHHCCCHHHHHHHHHhcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHH
Confidence 3 222222211 233333333333221 111111111111111 011122211111111211 2344566
Q ss_pred HHHHHHHHHHc-CCCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 006071 468 AKTALDSMIED-GHSPAS--SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDL 544 (662)
Q Consensus 468 a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 544 (662)
|...+...... ++.+.. .++..+.......+...++...++....... +......-+..-.+.++++.+...+..
T Consensus 260 A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~--~~~~~e~r~r~Al~~~dw~~~~~~i~~ 337 (644)
T PRK11619 260 ARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQ--STSLLERRVRMALGTGDRRGLNTWLAR 337 (644)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccC--CcHHHHHHHHHHHHccCHHHHHHHHHh
Confidence 66666665332 222221 1222222222222213455555554332221 233333334444467777777666666
Q ss_pred HHhC-CCCCCHHHH-HHHHhccCCHHHHHHHHHHHhc
Q 006071 545 MMQS-GSVPNFDSL-LSVLSEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 545 ~~~~-~~~p~~~~~-~~~~~~~g~~~~A~~~~~~~~~ 579 (662)
|... .-.+.+..+ +.++...|+.++|..+|+++..
T Consensus 338 L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~ 374 (644)
T PRK11619 338 LPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ 374 (644)
T ss_pred cCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 5431 112222332 3344556777777777776533
No 290
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.79 E-value=1.2 Score=40.47 Aligned_cols=77 Identities=13% Similarity=0.185 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh-----CCCCCCHHhHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR-----RGVPRDADAYICLI 456 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~ 456 (662)
++..++..+...++.+.+...++.+....|.+...|..++.+|...|+...|+..|+.+.+ .|+.|...+...+.
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 4566777788888888888888888888888888899999999999998888888887654 57777777666555
Q ss_pred HH
Q 006071 457 ES 458 (662)
Q Consensus 457 ~~ 458 (662)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 54
No 291
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.59 E-value=9 Score=35.85 Aligned_cols=133 Identities=14% Similarity=0.221 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHh--cC----CHHHHHHHHHHHhhCC---CCCCHHHHHHHHHHHHhCCCH-
Q 006071 213 DEAEKLFAEMKEKNIEPTVISYTTMIKGYVA--VE----RADDALRIFDEMKSFD---VKPNAVTYTALLPGLCDAGKM- 282 (662)
Q Consensus 213 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~----~~~~a~~~~~~~~~~~---~~~~~~~~~~ll~~~~~~g~~- 282 (662)
++...+++.|.+.|+..+..+|-+....... .. ....+..+|+.|++.. -.++..++..++.. ..++.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3455666667777766666555443222222 12 2456777888887643 12344555555433 33333
Q ss_pred ---HHHHHHHHHHHHcCCCCCcH-HHHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 006071 283 ---VEVQKVLREMVERYIPPKDN-SVFMKLLGVQCKSGH--LNAAADVLKAMIRLSIPTEAGHYGILIENF 347 (662)
Q Consensus 283 ---~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 347 (662)
+.++.+|+.+.+.|+...|. ...+.++.......+ ...+..+++.+.+.+++.....|..+.-..
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 45677777777767666554 333333333322222 346778888888888888877776655433
No 292
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=92.34 E-value=8.1 Score=34.72 Aligned_cols=199 Identities=17% Similarity=0.083 Sum_probs=129.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHH-H
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMK--KGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIE-S 458 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 458 (662)
........+...+....+...+..... ........+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 445555566666777777777776665 335566667777777777777888888888777643332 122222233 6
Q ss_pred HHhcCChHHHHHHHHHHHHcCC--CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGH--SPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVE 536 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 536 (662)
+...|+++.|...+.+...... ......+......+...++.+.+...+..............+..+...+...++++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE 219 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence 7788888888888888754211 01233333334446677888888888888877633323556677888888888888
Q ss_pred HHHHHHHHHHhCCCCCC----HHHHHHHHhccCCHHHHHHHHHHHhcCCCC
Q 006071 537 EALGRIDLMMQSGSVPN----FDSLLSVLSEKGKTIAAVKLLDFCLGRDCI 583 (662)
Q Consensus 537 ~A~~~~~~~~~~~~~p~----~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~ 583 (662)
.|...+..... ..|. .......+...+..+++...+.+.....+.
T Consensus 220 ~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 220 EALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 99888888876 3332 223444444667788888888888776543
No 293
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=92.11 E-value=2 Score=36.62 Aligned_cols=61 Identities=8% Similarity=0.157 Sum_probs=31.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 486 LFRSVMESLFEDGRVQTASRVMKSMVEKGVKE--NLDLVAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 486 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
.+..+...|.+.|+.+.|.+.|.++.+....+ -...+-.+++.....|++..+...+.+..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34455555566666666666666655542222 12333445555555555555555554443
No 294
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.09 E-value=0.46 Score=27.02 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|..++.++...|++++|+..+++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455566666666666666666666655
No 295
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.98 E-value=7.5 Score=33.55 Aligned_cols=183 Identities=15% Similarity=0.115 Sum_probs=100.5
Q ss_pred CChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHH
Q 006071 70 GKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYF 149 (662)
Q Consensus 70 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 149 (662)
|-+.-|+-=|.+.....+. -+.+||.+.--+...|+++.|.+.|+...+.+..-+-...|.-|.. ---|++.-|.+-|
T Consensus 79 GL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~ 156 (297)
T COG4785 79 GLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDL 156 (297)
T ss_pred hHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHH
Confidence 3334444334443333222 4668888888888889999999999998886533332333333333 2458888888877
Q ss_pred HHHHhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHhCCCCCCHHHHHHHHHHH-hhcCChHHHHHHHHHHHHCC
Q 006071 150 NKMLSEGIE-PTRHTYNVMLWGFFLSLKLETAIRFF-EDMKSRGISLDVVTYNTMINGY-NRFKKMDEAEKLFAEMKEKN 226 (662)
Q Consensus 150 ~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~ll~~~-~~~g~~~~a~~~~~~~~~~~ 226 (662)
.+..+.++. |-...|-.+. -..-++.+|..-+ ++..+. |..-|...|-.+ .-.=..+.+.+-...-...+
T Consensus 157 ~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n 229 (297)
T COG4785 157 LAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFYLGKISEETLMERLKADATDN 229 (297)
T ss_pred HHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHHHhhccHHHHHHHHHhhccch
Confidence 777665322 2222222222 1334566665443 444433 555555444333 22222222222111111110
Q ss_pred ---CCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006071 227 ---IEPTVISYTTMIKGYVAVERADDALRIFDEMKSFD 261 (662)
Q Consensus 227 ---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 261 (662)
-+.-+.||.-|.+.+...|+.++|..+|+-....+
T Consensus 230 ~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 230 TSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 01124678889999999999999999998887654
No 296
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=91.86 E-value=0.45 Score=27.62 Aligned_cols=25 Identities=12% Similarity=0.194 Sum_probs=15.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHH
Q 006071 522 VAKILEALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~~~~ 546 (662)
|..|...|.+.|++++|++++++.+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4556666666666666666666643
No 297
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.81 E-value=0.47 Score=26.90 Aligned_cols=30 Identities=17% Similarity=0.107 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
..+..++..+...|++++|++.+++.+...
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 356678999999999999999999987653
No 298
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=91.72 E-value=0.5 Score=28.87 Aligned_cols=27 Identities=22% Similarity=0.380 Sum_probs=22.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 591 KVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.++.+|...|+.+.|.+++++.+..+.
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~~ 30 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEGD 30 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence 478888889999999998888886654
No 299
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.65 E-value=6.7 Score=32.27 Aligned_cols=51 Identities=18% Similarity=0.042 Sum_probs=22.9
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
..++.+++..++..+.-..|..+..-..-...+...|++.+|..+|+.+..
T Consensus 22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 334444444444444444443333333333444444444444444444433
No 300
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.61 E-value=7.1 Score=32.56 Aligned_cols=135 Identities=11% Similarity=0.165 Sum_probs=63.8
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Q 006071 218 LFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYI 297 (662)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 297 (662)
.++.+...+++|+...+..++..+.+.|.+.. +..+...++-+|.......+-.+. +.+..+.++--+|..+
T Consensus 16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH--
Confidence 34444455566666666666666666665443 233334444444444333332222 2223333333334332
Q ss_pred CCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhh
Q 006071 298 PPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 298 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
-...+..++..+...|++-+|..+....... +......++++..+.++...-..+++-..+.+
T Consensus 88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 1112344555566666666666666554221 11122445555555666555555555554443
No 301
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.40 E-value=5.2 Score=40.18 Aligned_cols=153 Identities=18% Similarity=0.099 Sum_probs=86.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChh
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 108 (662)
.+.-.|+++.|-.++..+. ......++..+.++|-.++|+++- +|+.-. .....+.|+++
T Consensus 595 t~vmrrd~~~a~~vLp~I~--------k~~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~ 654 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIP--------KEIRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLD 654 (794)
T ss_pred HHhhhccccccccccccCc--------hhhhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHH
Confidence 3444566666665443321 334455666666777777666542 121111 12234567777
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 188 (662)
.|.++..+. .+..-|..|..+....+++..|.+.|..... |..|+-.+...|+-+....+-....
T Consensus 655 iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~ 719 (794)
T KOG0276|consen 655 IAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAK 719 (794)
T ss_pred HHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHH
Confidence 776665544 3556677777777777777777777766532 3455555666666665555555555
Q ss_pred hCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 006071 189 SRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEM 222 (662)
Q Consensus 189 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 222 (662)
+.|.. |.. .-+|...|+++++.+++..-
T Consensus 720 ~~g~~-N~A-----F~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 720 KQGKN-NLA-----FLAYFLSGDYEECLELLIST 747 (794)
T ss_pred hhccc-chH-----HHHHHHcCCHHHHHHHHHhc
Confidence 55432 222 22445567777777776554
No 302
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.40 E-value=4.1 Score=34.70 Aligned_cols=62 Identities=11% Similarity=0.228 Sum_probs=33.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 006071 233 SYTTMIKGYVAVERADDALRIFDEMKSFDVKPNA--VTYTALLPGLCDAGKMVEVQKVLREMVE 294 (662)
Q Consensus 233 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 294 (662)
.+..+...|.+.|+.++|++.|.++......+.. ..+..+++.....+++..+...+.++..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4455555666666666666666665544322222 2344555555556666666655555544
No 303
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.27 E-value=21 Score=37.27 Aligned_cols=255 Identities=15% Similarity=0.048 Sum_probs=146.6
Q ss_pred HcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcC-----ChhHHHHHHHHHHhcCCCCHHHHHHHHH
Q 006071 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNG-----QTGKAEIFFRQLMKKGVLDPVAFNNLIR 422 (662)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 422 (662)
....+.+.|+.+|+.+.+..... ...+ .......+..+|.+.. +...|..++.+....+.++.......+.
T Consensus 260 g~~~d~e~a~~~l~~aa~~~~~~-a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 260 GVTQDLESAIEYLKLAAESFKKA-ATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDAQYLLGVLY 335 (552)
T ss_pred cccccHHHHHHHHHHHHHHHHHH-Hhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 34556777777777664410000 0111 2334556666776643 5677999999999998777766655554
Q ss_pred HHHh-cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH----hcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc
Q 006071 423 GHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL----RKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFED 497 (662)
Q Consensus 423 ~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 497 (662)
.... ..+...|.++|....+.|.. ..+-.+..+|. -..+...|..++++..+.| .|...-....+..+..
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~- 410 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV- 410 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-
Confidence 4444 35678999999999988733 23322333222 2346788999999998877 3443333334444444
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHH---Hh----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cC
Q 006071 498 GRVQTASRVMKSMVEKGVKENLDLVAK-ILEAL---LM----RGHVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KG 565 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~---~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g 565 (662)
++++.+...+..+.+.+... ..+-.. ++... .. ..+.+.+..++.+....|..--...+.+.+.. ..
T Consensus 411 ~~~~~~~~~~~~~a~~g~~~-~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~ 489 (552)
T KOG1550|consen 411 GRYDTALALYLYLAELGYEV-AQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGR 489 (552)
T ss_pred ccccHHHHHHHHHHHhhhhH-HhhHHHHHHHhccccccccccccchhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCC
Confidence 77888777777777665542 222111 11111 11 11455666666666554443333444444432 23
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh-cC--CHHHHHHHHHHHHHcC
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA-AG--KTLNAYSILFKIMEKG 616 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g--~~~~A~~~~~~~~~~~ 616 (662)
+.+.|...+.++..++ ....+ .++.++-. .| ....|.+++.+.....
T Consensus 490 d~~~a~~~y~~a~~~~---~~~~~-nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 490 DPEKAAAQYARASEQG---AQALF-NLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred ChHHHHHHHHHHHHhh---hHHHh-hhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 6788888888777765 33333 35555543 12 2577888888776643
No 304
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.10 E-value=0.61 Score=26.40 Aligned_cols=27 Identities=19% Similarity=0.164 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|..+..++...|++++|++.+++.++
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344455556666666666666655554
No 305
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=90.98 E-value=0.65 Score=26.36 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=24.5
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
..|..++.++...|++++|++.+++.++..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 356789999999999999999999988753
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.91 E-value=0.8 Score=42.01 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=9.2
Q ss_pred HHHhCCCHHHHHHHHHHHH
Q 006071 528 ALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 528 ~~~~~g~~~~A~~~~~~~~ 546 (662)
-|.+.|.+++|+..|.+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i 124 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI 124 (536)
T ss_pred hhhhccchhHHHHHhhhhh
Confidence 3445555555555544433
No 307
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=90.89 E-value=17 Score=35.56 Aligned_cols=120 Identities=16% Similarity=0.121 Sum_probs=67.5
Q ss_pred HHcCChhHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHH
Q 006071 137 LRRGRYMMAKR-YFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEA 215 (662)
Q Consensus 137 ~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 215 (662)
...|+.-.|-+ ++..+....-.|+.....+. .+...|+++.+.+.+....+. +.....+...++....+.|+++.|
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence 34566665543 44444433233444333333 344667888777777655443 223455666777777777888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006071 216 EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSF 260 (662)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 260 (662)
..+-+-|....++ +...........-..|-++++...++++...
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~ 420 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL 420 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence 8777777655443 3333333233333456677777777776543
No 308
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.50 E-value=26 Score=37.08 Aligned_cols=38 Identities=11% Similarity=0.142 Sum_probs=18.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHH
Q 006071 100 SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILR 138 (662)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 138 (662)
.|.|+|++++|.++....... .......+...+..+..
T Consensus 120 y~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~ 157 (613)
T PF04097_consen 120 YCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYAS 157 (613)
T ss_dssp HHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTT
T ss_pred HHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHh
Confidence 445667777666666433321 22333445555555544
No 309
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=90.42 E-value=27 Score=37.03 Aligned_cols=87 Identities=21% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC-CCCCHHhHHHHHHHHHh---c
Q 006071 387 IQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG-VPRDADAYICLIESYLR---K 462 (662)
Q Consensus 387 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~---~ 462 (662)
...+.-.|+++.|.+++-. ......+...+...+..|.-..-.+... ..+.... -.|.+..+..|+..|.+ .
T Consensus 265 f~~LlLtgqFE~AI~~L~~-~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F~~ 340 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR-NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSFEI 340 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT---T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTTTT
T ss_pred HHHHHHHhhHHHHHHHHHh-hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHHhc
Confidence 3445567999999988877 1111333444433333332221111111 2222211 01122456677777765 4
Q ss_pred CChHHHHHHHHHHHH
Q 006071 463 GEPADAKTALDSMIE 477 (662)
Q Consensus 463 ~~~~~a~~~~~~~~~ 477 (662)
.++.+|.+.+--+..
T Consensus 341 td~~~Al~Y~~li~~ 355 (613)
T PF04097_consen 341 TDPREALQYLYLICL 355 (613)
T ss_dssp T-HHHHHHHHHGGGG
T ss_pred cCHHHHHHHHHHHHH
Confidence 567788887776653
No 310
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.30 E-value=25 Score=36.64 Aligned_cols=180 Identities=18% Similarity=0.102 Sum_probs=90.4
Q ss_pred ChhHHHHHHHHHHhcCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHH
Q 006071 395 QTGKAEIFFRQLMKKGVLDPVAFNNLIRGHS--KEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTAL 472 (662)
Q Consensus 395 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 472 (662)
+...|.++|..+...|......+.+++-... -..+...|..++++..+.| .|...--...+..+.. +.++.+...+
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~ 420 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALY 420 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHH
Confidence 4567777777777766443333332222222 2346777788887777776 2222222222333333 6666666666
Q ss_pred HHHHHcCCCCcHHhHHHHHHHH---Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---C-CHHHHHHH
Q 006071 473 DSMIEDGHSPASSLFRSVMESL---FE----DGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMR---G-HVEEALGR 541 (662)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~---~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g-~~~~A~~~ 541 (662)
..+.+.|.......-..++... .. ..+...+...+.+....| +......+..+|... + +++.|...
T Consensus 421 ~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~ 497 (552)
T KOG1550|consen 421 LYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQ 497 (552)
T ss_pred HHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHH
Confidence 6555544332211111111111 00 224555666666655443 344445555555433 2 57777777
Q ss_pred HHHHHhCCCCCCHHHHHHHHh----ccCCHHHHHHHHHHHhcCC
Q 006071 542 IDLMMQSGSVPNFDSLLSVLS----EKGKTIAAVKLLDFCLGRD 581 (662)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~~~~----~~g~~~~A~~~~~~~~~~~ 581 (662)
+......+ .-....+...+. ... +..|.++++++...+
T Consensus 498 y~~a~~~~-~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 498 YARASEQG-AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEED 539 (552)
T ss_pred HHHHHHhh-hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcC
Confidence 77766655 111122333332 234 788888888777754
No 311
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=90.21 E-value=2 Score=39.61 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=53.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCC
Q 006071 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGR 499 (662)
Q Consensus 420 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 499 (662)
-..-|.++|.+++|+..+....... +.+++++..-..+|.+...+..|..-....+..+ ..-...|+.-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 3456777788888888887766642 2277777777778888777777766666555321 0011222222223333455
Q ss_pred HHHHHHHHHHHHHc
Q 006071 500 VQTASRVMKSMVEK 513 (662)
Q Consensus 500 ~~~a~~~~~~~~~~ 513 (662)
..+|.+-++..++.
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 55565555555554
No 312
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.20 E-value=19 Score=35.02 Aligned_cols=65 Identities=11% Similarity=0.019 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEP---TVISYTTMIKGYVAVERADDALRIFDEMKS 259 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 259 (662)
...+|..++..+.+.|.++.|...+..+...+... .......-++.....|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45678888888889999999998888887643111 334445556777778888888888877765
No 313
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=90.00 E-value=0.019 Score=47.24 Aligned_cols=91 Identities=10% Similarity=0.222 Sum_probs=57.3
Q ss_pred CCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHH
Q 006071 19 PQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI 98 (662)
Q Consensus 19 ~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 98 (662)
+..+...+...+...+.++....+++.+...+ ...++...+.++..|++.+..+....+++.... .. ...++
T Consensus 6 ~~~~~~~vi~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~--yd-----~~~~~ 77 (143)
T PF00637_consen 6 DPLEISEVISAFEERNQPEELIEYLEALVKEN-KENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN--YD-----LDKAL 77 (143)
T ss_dssp TTSCSCCCHHHCTTTT-GGGCTCCHHHHHHTS-TC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS--S------CTHHH
T ss_pred CccCHHHHHHHHHhCCCHHHHHHHHHHHHhcc-cccCHHHHHHHHHHHHhcCCchHHHHHcccccc--cC-----HHHHH
Confidence 34445556677777788888888888887655 245677788888888888777777777763332 11 23455
Q ss_pred HHHHhcCChhHHHHHHHHH
Q 006071 99 ESYGKKGIVQESVKIFDIM 117 (662)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~ 117 (662)
..|.+.|.++++.-++.++
T Consensus 78 ~~c~~~~l~~~a~~Ly~~~ 96 (143)
T PF00637_consen 78 RLCEKHGLYEEAVYLYSKL 96 (143)
T ss_dssp HHHHTTTSHHHHHHHHHCC
T ss_pred HHHHhcchHHHHHHHHHHc
Confidence 5555666666666655554
No 314
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=89.34 E-value=14 Score=32.08 Aligned_cols=83 Identities=20% Similarity=0.065 Sum_probs=50.2
Q ss_pred CChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHH
Q 006071 394 GQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALD 473 (662)
Q Consensus 394 ~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 473 (662)
|-+..|.-=|.+.....|.-+.+||-+.-.+...|+++.|.+.|+...+.++.-+-...|.-+.. .-.|++.-|.+-+.
T Consensus 79 GL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~-YY~gR~~LAq~d~~ 157 (297)
T COG4785 79 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL-YYGGRYKLAQDDLL 157 (297)
T ss_pred hHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceee-eecCchHhhHHHHH
Confidence 44444555555666666667777777777777778888888888777776444333333333322 23467777766555
Q ss_pred HHHH
Q 006071 474 SMIE 477 (662)
Q Consensus 474 ~~~~ 477 (662)
..-.
T Consensus 158 ~fYQ 161 (297)
T COG4785 158 AFYQ 161 (297)
T ss_pred HHHh
Confidence 5544
No 315
>PRK11619 lytic murein transglycosylase; Provisional
Probab=89.21 E-value=33 Score=36.41 Aligned_cols=61 Identities=10% Similarity=0.033 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 006071 302 NSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (662)
Q Consensus 302 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (662)
......-+......++++.+...+..|.... .....-.--+..++...|+.++|...|+.+
T Consensus 312 ~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 312 TSLLERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred cHHHHHHHHHHHHccCHHHHHHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3334444445556666666666666553321 223333444555555566666666666665
No 316
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.15 E-value=24 Score=34.74 Aligned_cols=40 Identities=15% Similarity=0.306 Sum_probs=23.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChH
Q 006071 174 SLKLETAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMD 213 (662)
Q Consensus 174 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 213 (662)
.+.++...+++..+...|.......+|.-...|.+.|...
T Consensus 30 ~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 30 NSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 4566666666666666655544455555555566655543
No 317
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=88.98 E-value=22 Score=34.01 Aligned_cols=117 Identities=10% Similarity=0.109 Sum_probs=64.5
Q ss_pred HHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh---cCCHHHHHHHHH
Q 006071 432 SAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE---DGRVQTASRVMK 508 (662)
Q Consensus 432 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~ 508 (662)
.-+.+++++.+.+. .+...+..++..+.+..+.+...+.|+++.... +-+...|...+..... .-.++....+|.
T Consensus 49 ~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~ 126 (321)
T PF08424_consen 49 RKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVYE 126 (321)
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence 34455666555532 355566666666666666666666666666532 2245556555554333 223445555554
Q ss_pred HHHHc------CC------CCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCC
Q 006071 509 SMVEK------GV------KEN-----LDLVAKILEALLMRGHVEEALGRIDLMMQSGS 550 (662)
Q Consensus 509 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 550 (662)
+.++. +. .+. ...+..+...+.++|..+.|+.+++.+++.++
T Consensus 127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 44332 11 000 12233444556688999999999998887543
No 318
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.83 E-value=11 Score=30.45 Aligned_cols=52 Identities=17% Similarity=0.196 Sum_probs=30.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCC
Q 006071 496 EDGRVQTASRVMKSMVEKGVK-ENLDLVAKILEALLMRGHVEEALGRIDLMMQSG 549 (662)
Q Consensus 496 ~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 549 (662)
..++.+++..+++.+.-..++ +...++ -...+...|+|++|+.+++++.+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~--dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMF--DGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchh--HHHHHHHcCCHHHHHHHHHhhhccC
Confidence 366777777777776655333 122233 2334566777777777777776644
No 319
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.35 E-value=4.4 Score=37.03 Aligned_cols=98 Identities=16% Similarity=0.231 Sum_probs=71.7
Q ss_pred ccccHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHH
Q 006071 379 EASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYIC 454 (662)
Q Consensus 379 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 454 (662)
...+....+..-....+++.+...+-++.... .++. +....++.+.+ -++++++.++..=...|+-||..++..
T Consensus 63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf~~c~ 140 (418)
T KOG4570|consen 63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQFTFCL 140 (418)
T ss_pred ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchhhHHH
Confidence 44445555555556778888888888877654 1221 22233444433 477899999988889999999999999
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHc
Q 006071 455 LIESYLRKGEPADAKTALDSMIED 478 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~~~~~~~ 478 (662)
+++.+.+.+++.+|..+.-.|+..
T Consensus 141 l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 141 LMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999888877754
No 320
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.85 E-value=0.88 Score=23.99 Aligned_cols=21 Identities=33% Similarity=0.270 Sum_probs=15.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 006071 590 EKVLDALLAAGKTLNAYSILF 610 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~ 610 (662)
..++.++...|++++|...++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 457777777888888777765
No 321
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=87.77 E-value=4.9 Score=29.46 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (662)
++.+-++.+....+.|++....+.+.+|.+.+|+..|+++++....+. ..+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 445555555555667777777777777777777777777777666441 11334454444
No 322
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=87.69 E-value=25 Score=33.05 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHcCCCcCHHhHHHHHHHHHH--cC----ChhHHHHHHHHHHhC
Q 006071 109 ESVKIFDIMKQLGVERSVKSYDALFKLILR--RG----RYMMAKRYFNKMLSE 155 (662)
Q Consensus 109 ~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~ 155 (662)
+...+++.+.+.|+..+..+|.+....... .. ....|..+|+.|.+.
T Consensus 80 ~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 80 EVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 344555666666655555444443222222 11 134455566666554
No 323
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.56 E-value=1.6 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.120 Sum_probs=23.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 588 SYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
.|..++..+...|++++|.+.+++.++-
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4667888899999999999999887754
No 324
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.52 E-value=1.4 Score=30.74 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=30.5
Q ss_pred ccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 563 EKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 563 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
.+.+.++|+..|+++++..+.+. ......++.+|+..|++.+.+++--+
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666777777777776644433 34455566777777777776665443
No 325
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=87.43 E-value=11 Score=33.32 Aligned_cols=53 Identities=6% Similarity=-0.016 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhcCCCCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 006071 568 IAAVKLLDFCLGRDCII-----DLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 620 (662)
..|...|+++.+....+ .......++....+.|++++|.+.+.+++..+..+.
T Consensus 142 ~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 142 RKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 34555566666543221 134445788888899999999999999988776544
No 326
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.17 E-value=14 Score=29.85 Aligned_cols=51 Identities=14% Similarity=-0.136 Sum_probs=29.0
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC
Q 006071 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR 443 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 443 (662)
.++.+++..+++.+.-..|..+..-..-...+...|++++|..+|+.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 556666666666665555544444444444555566666666666666554
No 327
>PRK09687 putative lyase; Provisional
Probab=86.94 E-value=26 Score=32.60 Aligned_cols=121 Identities=13% Similarity=0.055 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCHHHHHHHH
Q 006071 195 DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE-RADDALRIFDEMKSFDVKPNAVTYTALL 273 (662)
Q Consensus 195 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll 273 (662)
+..+-...+.++.+.++ ..+...+-.+... ++...-...+.++.+.+ ....+...+..+.. .++..+-...+
T Consensus 141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~ 213 (280)
T PRK09687 141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI 213 (280)
T ss_pred CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence 33444444444444444 3344444343332 23333333333333321 12233443433332 23444445555
Q ss_pred HHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006071 274 PGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 274 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
.++.+.|+. .+...+-...+.+ + .....+.++...|+. .|...+..+.+
T Consensus 214 ~aLg~~~~~-~av~~Li~~L~~~----~--~~~~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 214 IGLALRKDK-RVLSVLIKELKKG----T--VGDLIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHccCCh-hHHHHHHHHHcCC----c--hHHHHHHHHHhcCCH-hHHHHHHHHHh
Confidence 555555553 3333333333321 1 223344444445543 34444444443
No 328
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=86.78 E-value=32 Score=33.43 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=27.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR 442 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 442 (662)
+|..+...+.+.|.++.|...+..+.... ...+.+...-+..+...|+..+|...++....
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444445555555555555555544432 11233333334444444555555554444443
No 329
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=86.63 E-value=1.4 Score=24.59 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=20.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 590 EKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 590 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
..++.++.+.|++++|.+.+++++..
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 35777788888888888888887765
No 330
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.46 E-value=1.8 Score=25.87 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=21.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 588 SYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
.++.++..|...|++++|.+++++.+.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 456788888889999999988888765
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.44 E-value=14 Score=37.26 Aligned_cols=135 Identities=16% Similarity=0.164 Sum_probs=98.1
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHH
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIE 99 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 99 (662)
....+-+...|.++|-.++|+++. +++.. -.....+.|+++.|.++..+.. ++.-|..|.+
T Consensus 614 k~~rt~va~Fle~~g~~e~AL~~s----------~D~d~---rFelal~lgrl~iA~~la~e~~------s~~Kw~~Lg~ 674 (794)
T KOG0276|consen 614 KEIRTKVAHFLESQGMKEQALELS----------TDPDQ---RFELALKLGRLDIAFDLAVEAN------SEVKWRQLGD 674 (794)
T ss_pred hhhhhhHHhHhhhccchHhhhhcC----------CChhh---hhhhhhhcCcHHHHHHHHHhhc------chHHHHHHHH
Confidence 446677778888888888887654 22222 1233457899999998877653 5667999999
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006071 100 SYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLET 179 (662)
Q Consensus 100 ~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~ 179 (662)
+....|++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. | . ...++...|++++
T Consensus 675 ~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~-N-~----AF~~~~l~g~~~~ 739 (794)
T KOG0276|consen 675 AALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN-N-L----AFLAYFLSGDYEE 739 (794)
T ss_pred HHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhccc-c-h----HHHHHHHcCCHHH
Confidence 99999999999999988875 667888888888887776666666666532 2 2 2334567899999
Q ss_pred HHHHHHHHH
Q 006071 180 AIRFFEDMK 188 (662)
Q Consensus 180 a~~~~~~~~ 188 (662)
+.+++..-.
T Consensus 740 C~~lLi~t~ 748 (794)
T KOG0276|consen 740 CLELLISTQ 748 (794)
T ss_pred HHHHHHhcC
Confidence 998886653
No 332
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=86.36 E-value=6.3 Score=34.05 Aligned_cols=77 Identities=17% Similarity=0.113 Sum_probs=61.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCC--CCCCHHhHHHHHHH
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRG--VPRDADAYICLIES 458 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~ 458 (662)
|.+..+..+.+.+...+++...+.-.+..|.+...-..+++.++-.|++++|..-++..-+.. ..+-..+|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 445556677788999999999999999989999999999999999999999998888776532 23345677777765
No 333
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.20 E-value=2.1 Score=25.55 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 520 DLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 520 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+++.+...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566777777777777777777776654
No 334
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=86.06 E-value=51 Score=35.06 Aligned_cols=189 Identities=13% Similarity=0.060 Sum_probs=91.0
Q ss_pred HhcCChHHHHHHHHHHHHcCC-CCc-----HHhHHHHHH--HHHhcCCHHHHHHHHH--------HHHHcCCCCCHHHHH
Q 006071 460 LRKGEPADAKTALDSMIEDGH-SPA-----SSLFRSVME--SLFEDGRVQTASRVMK--------SMVEKGVKENLDLVA 523 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~-~~~-----~~~~~~l~~--~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~ 523 (662)
+-.+++..|...++.+.+... .|+ ...+...+. .+...|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 345778888888887774311 111 112222222 3445688888888887 333444444444433
Q ss_pred H--HHHHHHhCCC--HHH--HHHHHHHHHhC-CCCCCHH------HHHHHHh--ccCCHHHHHHHHHHHhcCC-CC--CC
Q 006071 524 K--ILEALLMRGH--VEE--ALGRIDLMMQS-GSVPNFD------SLLSVLS--EKGKTIAAVKLLDFCLGRD-CI--ID 585 (662)
Q Consensus 524 ~--l~~~~~~~g~--~~~--A~~~~~~~~~~-~~~p~~~------~~~~~~~--~~g~~~~A~~~~~~~~~~~-~~--~~ 585 (662)
. ++..+...+. .++ .-++++.+... ...|+.. .+..++. ..-...++...+..+++.. .. .+
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 2 2222333332 222 55555555431 2233311 1222222 1223335655555444432 11 11
Q ss_pred ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---cHhhH---H--HHHHHHHhcCCcchhHHHHHHhhh
Q 006071 586 ---LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT---DWKSS---D--KLIAGLNQEGNTKQADILSRMIRG 649 (662)
Q Consensus 586 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~---~--~l~~~~~~~g~~~~a~~~~~~~~~ 649 (662)
...++.+...++ .|...|..+............ ....| . .+...|...|+.++|..+......
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 222334444444 788888777666644322111 12222 1 244448889999999777666543
No 335
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=85.28 E-value=13 Score=27.64 Aligned_cols=47 Identities=11% Similarity=0.275 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 467 DAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 467 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+..+-+..+....+.|++....+.+.+|.+.+++..|+++++.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555555555567777777788888888888888888888877665
No 336
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=85.27 E-value=9.1 Score=28.28 Aligned_cols=52 Identities=21% Similarity=0.226 Sum_probs=33.4
Q ss_pred HHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006071 560 VLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 560 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 617 (662)
.+...|+|++|..+.+.. +.|+.+.| ++-+-.+.|-.+.+..-+-++-.++.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw--~ALce~rlGl~s~l~~rl~rla~sg~ 99 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPW--LALCEWRLGLGSALESRLNRLAASGD 99 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHH--HHHHHHhhccHHHHHHHHHHHHhCCC
Confidence 345678888887776622 45666666 34445677777777777777666654
No 337
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=84.92 E-value=1.8 Score=24.42 Aligned_cols=27 Identities=19% Similarity=0.143 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 521 LVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.|..+...|...|++++|.+.|++.++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555566666666666666665554
No 338
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=84.78 E-value=62 Score=34.89 Aligned_cols=229 Identities=15% Similarity=0.136 Sum_probs=122.6
Q ss_pred HHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCcc---ccHHHHHH-HHHhcCChhHHHHHHHHHHhcCC-----CCHHHH
Q 006071 347 FCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEA---SSYNPMIQ-HLCHNGQTGKAEIFFRQLMKKGV-----LDPVAF 417 (662)
Q Consensus 347 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~ 417 (662)
.....++.+|..++.++...- +.....+.. ..+..+-. .....|+++.|..+.+.....-+ .....+
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l----~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~ 500 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFL----KAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVAL 500 (894)
T ss_pred HHHccChHHHHHHHHHHHHHh----CcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhh
Confidence 345678889988888874432 111111111 12333322 23456889999999888876542 344566
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHh---HHHH--HHHHHhcCCh--HHHHHHHHHHHHcC--CCC----cH
Q 006071 418 NNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADA---YICL--IESYLRKGEP--ADAKTALDSMIEDG--HSP----AS 484 (662)
Q Consensus 418 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l--~~~~~~~~~~--~~a~~~~~~~~~~~--~~~----~~ 484 (662)
..+..+..-.|++++|..+.....+..-.-+... |..+ ...+...|+. ++....+....... -+| -.
T Consensus 501 sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~ 580 (894)
T COG2909 501 SVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLV 580 (894)
T ss_pred hhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHH
Confidence 7777888889999999988877655321223332 3222 2335566633 33333333333211 111 11
Q ss_pred HhHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCC--CCHHHH--
Q 006071 485 SLFRSVMESLFE-DGRVQTASRVMKSMVEKGVKENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSV--PNFDSL-- 557 (662)
Q Consensus 485 ~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--p~~~~~-- 557 (662)
.+...++.++.+ .+...++..-++......+.|-.... ..++.+....|+.++|...+.++...... |.....
T Consensus 581 ~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 581 RIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 233333444433 22223333333333333333322222 36788888999999999988887752211 332221
Q ss_pred ---HHH-H-hccCCHHHHHHHHHHHhc
Q 006071 558 ---LSV-L-SEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 558 ---~~~-~-~~~g~~~~A~~~~~~~~~ 579 (662)
+.. | ...|+.++|.....+...
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 111 1 257999998888776443
No 339
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.67 E-value=30 Score=31.13 Aligned_cols=229 Identities=10% Similarity=0.092 Sum_probs=136.2
Q ss_pred CCCCCCCccccHHHHHHHH-HhcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhC---
Q 006071 372 PQSTLDMEASSYNPMIQHL-CHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRR--- 443 (662)
Q Consensus 372 ~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 443 (662)
.+++..||+..=+..-.+- .+...+++|+.-|+...+.. ...-.+...++....+.+++++..+.+.++...
T Consensus 18 dds~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkS 97 (440)
T KOG1464|consen 18 DDSNSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKS 97 (440)
T ss_pred cccCCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 3445556665433322221 23458899999999988765 233446677888999999999999888877531
Q ss_pred CC--CCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHc-----CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006071 444 GV--PRDADAYICLIESYLRKGEPADAKTALDSMIED-----GHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK--- 513 (662)
Q Consensus 444 ~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 513 (662)
.+ .-+..+.|.++.......+.+--..+++.-.+. +-+.-..|-..+...+...|.+..-.++++++...
T Consensus 98 AVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 98 AVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred HHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 11 124456677777666555555444444432211 11122334456677788888888888888887653
Q ss_pred --CCC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCC--HHHHHHHHh-----ccCCHHHHHHHHHHH
Q 006071 514 --GVK------ENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPN--FDSLLSVLS-----EKGKTIAAVKLLDFC 577 (662)
Q Consensus 514 --~~~------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~--~~~~~~~~~-----~~g~~~~A~~~~~~~ 577 (662)
|-. --.+.|..-+..|....+-..-..++++.+. ..-.|. +-.++.-|+ +.|++++|-.=|-.+
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 111 0134566666777777776666677776664 222333 334444443 568888886555446
Q ss_pred hcCCC---CCC---hhhHHHHHHHHHhcC
Q 006071 578 LGRDC---IID---LASYEKVLDALLAAG 600 (662)
Q Consensus 578 ~~~~~---~~~---~~~~~~l~~~~~~~g 600 (662)
.+... .|. ..-|..++..+.+.|
T Consensus 258 FKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 258 FKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 55421 222 344667777777766
No 340
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=84.54 E-value=12 Score=27.41 Aligned_cols=66 Identities=15% Similarity=0.203 Sum_probs=41.7
Q ss_pred HHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCC-CHHHHHHHHHHHHhcCChh
Q 006071 41 QFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQW-DEDMFEVLIESYGKKGIVQ 108 (662)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 108 (662)
.-++...+.+ |.+..+...+...+...|+++.|.+.+-.+++.+... +...-..++..+.-.|.-+
T Consensus 9 ~al~~~~a~~--P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 9 AALEAALAAN--PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp HHHHHHHHHS--TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 3444555555 7788888888999999999999998888888765443 3444555555554444433
No 341
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.46 E-value=63 Score=34.75 Aligned_cols=172 Identities=15% Similarity=0.148 Sum_probs=84.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCH--HHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhcC
Q 006071 168 LWGFFLSLKLETAIRFFEDMKSRGISLDV--VTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAVE 245 (662)
Q Consensus 168 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 245 (662)
=..|...|+++.|+++-..- |+. .++..-...|...+++..|-++|.++.+ .|..+.--+....
T Consensus 365 Wk~yLd~g~y~kAL~~ar~~------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~--------~FEEVaLKFl~~~ 430 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEIARTR------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS--------SFEEVALKFLEIN 430 (911)
T ss_pred HHHHHhcchHHHHHHhccCC------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh--------hHHHHHHHHHhcC
Confidence 34566778888877765332 332 2334445667778888888888887742 2333444444455
Q ss_pred CHHHHHHHHHHHhhCCCCCCHHHHHHH-----HHHH-HhCCCHH----HHHHHHHHH--------HHcCCCCCcHHHHHH
Q 006071 246 RADDALRIFDEMKSFDVKPNAVTYTAL-----LPGL-CDAGKMV----EVQKVLREM--------VERYIPPKDNSVFMK 307 (662)
Q Consensus 246 ~~~~a~~~~~~~~~~~~~~~~~~~~~l-----l~~~-~~~g~~~----~a~~~~~~~--------~~~~~~~~~~~~~~~ 307 (662)
+.+ +++.|-.=+-..++|...+-..+ +..+ .+.++.+ ++..-++.- ........+.....+
T Consensus 431 ~~~-~L~~~L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nret 509 (911)
T KOG2034|consen 431 QER-ALRTFLDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRET 509 (911)
T ss_pred CHH-HHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHH
Confidence 544 33332111111233433332221 2221 1222221 222211111 110011112223333
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHH
Q 006071 308 LLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKL 363 (662)
Q Consensus 308 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 363 (662)
....+...|+.+....+-.-+.+ |..++.-+++.+.+.+|++++..-
T Consensus 510 v~~l~~~~~~~e~ll~fA~l~~d---------~~~vv~~~~q~e~yeeaLevL~~~ 556 (911)
T KOG2034|consen 510 VYQLLASHGRQEELLQFANLIKD---------YEFVVSYWIQQENYEEALEVLLNQ 556 (911)
T ss_pred HHHHHHHccCHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44445556776666655444433 667788888888888888887664
No 342
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.30 E-value=5.3 Score=36.53 Aligned_cols=94 Identities=11% Similarity=0.171 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCHH-----hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH
Q 006071 93 MFEVLIESYGKKGIVQESVKIFDIMKQLGVERSVK-----SYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM 167 (662)
Q Consensus 93 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 167 (662)
+...++..-....+++++...+-.++.. |+.. +-...++.+. .-++++++.++..=++.|+-||..+++.+
T Consensus 66 ~Vd~~V~v~~~~~~idd~~~~LyKlRhs---~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~~c~l 141 (418)
T KOG4570|consen 66 TVDRLVDVISSREEIDDAEYYLYKLRHS---PNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFTFCLL 141 (418)
T ss_pred ehhhhhhccccccchhHHHHHHHHHhcC---cchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhhHHHH
Confidence 3334444444455666666666555532 2111 1112222222 23455666666555566666666666666
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC
Q 006071 168 LWGFFLSLKLETAIRFFEDMKSR 190 (662)
Q Consensus 168 l~~~~~~~~~~~a~~~~~~~~~~ 190 (662)
|+.+.+.+++.+|.++...|...
T Consensus 142 ~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 142 MDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHhcccHHHHHHHHHHHHHH
Confidence 66666666666666665555543
No 343
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=84.18 E-value=47 Score=33.06 Aligned_cols=93 Identities=14% Similarity=0.037 Sum_probs=51.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh--cCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHh
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA--AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQ 633 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 633 (662)
++...+.+.|-+++|...+.+.... |+++...|..+++.=-. ..+...+.++++.+...-+ .+...|.....-=..
T Consensus 465 ~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg-~d~~lw~~y~~~e~~ 542 (568)
T KOG2396|consen 465 KYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFG-ADSDLWMDYMKEELP 542 (568)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhC-CChHHHHHHHHhhcc
Confidence 3455555667777777777744443 45555555555543321 3346667777777766544 455555555555556
Q ss_pred cCCcchh-HHHHHHhhhh
Q 006071 634 EGNTKQA-DILSRMIRGE 650 (662)
Q Consensus 634 ~g~~~~a-~~~~~~~~~~ 650 (662)
.|..+.+ ...++.++-+
T Consensus 543 ~g~~en~~~~~~ra~ktl 560 (568)
T KOG2396|consen 543 LGRPENCGQIYWRAMKTL 560 (568)
T ss_pred CCCcccccHHHHHHHHhh
Confidence 7777777 3334444433
No 344
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=84.13 E-value=48 Score=33.09 Aligned_cols=62 Identities=8% Similarity=0.090 Sum_probs=28.7
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Q 006071 231 VISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLREMVER 295 (662)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 295 (662)
-....+++..+..+-...-+..+..+|...| .+...|..++.+|... ..+.-..+++++++.
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~ 127 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEY 127 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh
Confidence 3344444444444444444445555554432 2444455555555444 334444444444443
No 345
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=84.00 E-value=35 Score=31.39 Aligned_cols=168 Identities=9% Similarity=0.134 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhccc-CCCCCCHHHHHHHHHHHHh-cCC-hhHHHH
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPK-KGVQWDEDMFEVLIESYGK-KGI-VQESVK 112 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~g~-~~~A~~ 112 (662)
-++-..+++-....-...... -|..++. ++...-+|+.+|+.... ..+-.|+.+...++..... .+. ...-.+
T Consensus 112 ~~Dli~FL~~~i~~~~~~k~~-~Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYE 187 (292)
T PF13929_consen 112 KEDLISFLKLVIINLSSNKSF-NYWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYE 187 (292)
T ss_pred HHHHHHHHHHHHhccccccch-HHHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHH
Confidence 445566666654443112222 2555553 44557788888874322 2334477788888877765 222 223334
Q ss_pred HHHHHHHc-CCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH----
Q 006071 113 IFDIMKQL-GVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKLETAIRFFED---- 186 (662)
Q Consensus 113 ~~~~~~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---- 186 (662)
+.+-+... |-.++..+...++..+++.+++.+-.++++..... ++..|...|..+|......|+..-...+.+.
T Consensus 188 vV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLL 267 (292)
T PF13929_consen 188 VVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLL 267 (292)
T ss_pred HHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeE
Confidence 44444332 34677888888999999999999999999888665 5667888899999999999998877777654
Q ss_pred -HHhCCCCCCHHHHHHHHHHHh
Q 006071 187 -MKSRGISLDVVTYNTMINGYN 207 (662)
Q Consensus 187 -~~~~~~~~~~~~~~~ll~~~~ 207 (662)
+++.++..+...-..+-..+.
T Consensus 268 wikR~~V~v~~~L~~~L~~LF~ 289 (292)
T PF13929_consen 268 WIKRNNVDVTDELRSQLSELFK 289 (292)
T ss_pred EeeecCCcCCHHHHHHHHHHHH
Confidence 234456666665555555443
No 346
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.96 E-value=17 Score=31.33 Aligned_cols=78 Identities=14% Similarity=0.081 Sum_probs=57.9
Q ss_pred HHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHHHHHHHHhhcCChH
Q 006071 137 LRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSR---GISLDVVTYNTMINGYNRFKKMD 213 (662)
Q Consensus 137 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~ll~~~~~~g~~~ 213 (662)
.+.| -+.|...|-.+...+.--++.....+...| ...+.++++.++-...+. +-.+|...+.+|+..+.+.|+++
T Consensus 118 sr~~-d~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFG-DQEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccC-cHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 3444 467888888887776555555555555555 478899999998887754 33678999999999999999998
Q ss_pred HHH
Q 006071 214 EAE 216 (662)
Q Consensus 214 ~a~ 216 (662)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 347
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.88 E-value=9.7 Score=27.99 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=12.5
Q ss_pred CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 157 IEPTRHTYNVMLWGFFLSLKLETAIRFFEDM 187 (662)
Q Consensus 157 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 187 (662)
.-|++....+.+++|-+.+++..|.++++.+
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE~v 68 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILEAI 68 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 3334444444444444444444444444333
No 348
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=83.76 E-value=6.2 Score=31.10 Aligned_cols=50 Identities=6% Similarity=-0.059 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHhcCCCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 566 KTIAAVKLLDFCLGRDCI-IDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
+..+.+.+++..++..++ ....-.+-|+-++++.|+++.+.++++.+++.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 444555566655542211 11222223666666777777777776666654
No 349
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=83.59 E-value=9.8 Score=27.96 Aligned_cols=66 Identities=24% Similarity=0.254 Sum_probs=42.1
Q ss_pred HHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-cHhhHHHHHHHHHhcCCcch
Q 006071 573 LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVT-DWKSSDKLIAGLNQEGNTKQ 639 (662)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~ 639 (662)
-+++.++.+|. +...-..++..+...|++++|++.+-.++...... +...-..|+..+...|..+.
T Consensus 10 al~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 10 ALEAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp HHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 34455555533 44445578999999999999999999988765432 33344567777877777554
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=83.53 E-value=16 Score=27.11 Aligned_cols=93 Identities=15% Similarity=0.178 Sum_probs=62.7
Q ss_pred HHhcCC--CHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCC
Q 006071 29 VLHGAK--NSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGI 106 (662)
Q Consensus 29 ~l~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 106 (662)
+|...| ..++|-.+-+|+...+ .....+-..-+..+...|+|++|.++.+... .||...|..+.. .+.|.
T Consensus 12 AL~gTG~HcHqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl 83 (115)
T TIGR02508 12 ALIGTGHHCHQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGL 83 (115)
T ss_pred HHHHccchHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--Hhhcc
Confidence 455555 6789999999987643 1222233334456778999999998887773 478888877654 46777
Q ss_pred hhHHHHHHHHHHHcCCCcCHHhHH
Q 006071 107 VQESVKIFDIMKQLGVERSVKSYD 130 (662)
Q Consensus 107 ~~~A~~~~~~~~~~g~~~~~~~~~ 130 (662)
-+.+...+.++...| .|....|.
T Consensus 84 ~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 84 GSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHH
Confidence 777777787887766 34444443
No 351
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.27 E-value=49 Score=32.59 Aligned_cols=123 Identities=12% Similarity=0.026 Sum_probs=70.8
Q ss_pred HhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhH
Q 006071 30 LHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQE 109 (662)
Q Consensus 30 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 109 (662)
-...|+.-.|-+-...++++. |.+|........++...|+++.+.+.+....+. +.....+...+++.....|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~--~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQ--QQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhC--CCCchhhHHHHHHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 335666666666555555554 555555555566667777777777776655432 22345566677777777777777
Q ss_pred HHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 006071 110 SVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEG 156 (662)
Q Consensus 110 A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 156 (662)
|...-.-|....+. ++.........--..|-++++.-.|+++...+
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77776666654432 22222222222233455667777676665543
No 352
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.78 E-value=2.5 Score=22.22 Aligned_cols=19 Identities=21% Similarity=0.239 Sum_probs=8.7
Q ss_pred HHHHHHHhcCChHHHHHHH
Q 006071 61 KMIEILGRVGKLNHARCIL 79 (662)
Q Consensus 61 ~l~~~~~~~g~~~~a~~~~ 79 (662)
.+..++...|++++|..++
T Consensus 6 ~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 6 ALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHcCCHHHHHHHH
Confidence 3444444444444444444
No 353
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=82.70 E-value=55 Score=32.71 Aligned_cols=93 Identities=14% Similarity=0.043 Sum_probs=38.6
Q ss_pred hhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHH
Q 006071 337 AGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVA 416 (662)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 416 (662)
.....+++..+..+..+.-...+..+++.-+ -+...+..++.+|... ..+.-..+|+++.+..-.+...
T Consensus 66 d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~----------e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfnDvv~ 134 (711)
T COG1747 66 DSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG----------ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFNDVVI 134 (711)
T ss_pred chHHHHHHHHhccchHHHHHHHHHHHHHHhc----------chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcchhHHH
Confidence 3334444444444444444444444443322 1222344444444444 3334444444444444333333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHh
Q 006071 417 FNNLIRGHSKEGNPDSAFEIVKIMG 441 (662)
Q Consensus 417 ~~~l~~~~~~~~~~~~a~~~~~~~~ 441 (662)
-..|+..|-+ ++.+.+..+|..+.
T Consensus 135 ~ReLa~~yEk-ik~sk~a~~f~Ka~ 158 (711)
T COG1747 135 GRELADKYEK-IKKSKAAEFFGKAL 158 (711)
T ss_pred HHHHHHHHHH-hchhhHHHHHHHHH
Confidence 3333333333 44444444444443
No 354
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=82.42 E-value=28 Score=31.64 Aligned_cols=23 Identities=22% Similarity=0.392 Sum_probs=16.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 006071 591 KVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
.++..+++.|++.+|+.++.-+.
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll 152 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLL 152 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 46677778888888877666544
No 355
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=81.89 E-value=1.3e+02 Score=36.64 Aligned_cols=331 Identities=12% Similarity=0.096 Sum_probs=175.3
Q ss_pred CCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHH-HHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHH
Q 006071 20 QFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMI-EILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLI 98 (662)
Q Consensus 20 ~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 98 (662)
..+...+..+-.+++.+..|+..++.-............+..++ ..|+..++++...-+...-.. +...+.. |
T Consensus 1383 ~iP~~tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~q-i 1456 (2382)
T KOG0890|consen 1383 LIPSDTLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQQ-I 1456 (2382)
T ss_pred hccHHHHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHHH-H
Confidence 33455677788889999999999998511110011122344444 499999999999888774211 3333333 4
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHhcCCH
Q 006071 99 ESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVM-LWGFFLSLKL 177 (662)
Q Consensus 99 ~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~ 177 (662)
......|++..|..-|+.+.+.+ ++....++.++......|.++..+...+-.... ..+....++.+ +.+--+.+++
T Consensus 1457 l~~e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qw 1534 (2382)
T KOG0890|consen 1457 LEHEASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQW 1534 (2382)
T ss_pred HHHHhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcch
Confidence 45567899999999999999876 344778888888877888888888766666543 23333333332 3334567777
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHH--HHHHhh--cCChHHHHHHHHHHHHC--------CCCCC-HhhHHHHHHHHHhc
Q 006071 178 ETAIRFFEDMKSRGISLDVVTYNTM--INGYNR--FKKMDEAEKLFAEMKEK--------NIEPT-VISYTTMIKGYVAV 244 (662)
Q Consensus 178 ~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~~~--~g~~~~a~~~~~~~~~~--------~~~~~-~~~~~~l~~~~~~~ 244 (662)
+....... .+ +..+|... .....+ ..|.-.-.+.++.+.+. +..-+ ...|..++....-.
T Consensus 1535 D~~e~~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~ 1607 (2382)
T KOG0890|consen 1535 DLLESYLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL 1607 (2382)
T ss_pred hhhhhhhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH
Confidence 77766655 22 33333322 222222 12221111222222221 11111 12344444443322
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHH----cCCCCCcHHHHHHHHHHHHhcCChH
Q 006071 245 ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLRE-MVE----RYIPPKDNSVFMKLLGVQCKSGHLN 319 (662)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~----~~~~~~~~~~~~~l~~~~~~~g~~~ 319 (662)
.-......+...-.......+..-|..-+..-....+..+-+-.+++ +.. .+....-...|...++...+.|.++
T Consensus 1608 el~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q 1687 (2382)
T KOG0890|consen 1608 ELENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQ 1687 (2382)
T ss_pred HHHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHH
Confidence 11111111110000000111111222222211111111111111111 111 1223334567888888888899999
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhh
Q 006071 320 AAADVLKAMIRLSIPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEI 368 (662)
Q Consensus 320 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 368 (662)
.|...+-...+.+ . +..+--....+-..|+...|+.++++.++...
T Consensus 1688 ~A~nall~A~e~r-~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1688 RAQNALLNAKESR-L--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHHhhhhcc-c--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9988777766654 2 33444555666778999999999999886653
No 356
>PF13934 ELYS: Nuclear pore complex assembly
Probab=81.85 E-value=33 Score=30.67 Aligned_cols=106 Identities=21% Similarity=0.276 Sum_probs=65.0
Q ss_pred HHHHHHHH--HhCCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHh
Q 006071 522 VAKILEAL--LMRGHVEEALGRIDLMMQSGSVPNFD-SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLA 598 (662)
Q Consensus 522 ~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~-~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 598 (662)
+...++++ ...+++++|++++- .....|+.. .++.++...|+.+.|..+++ +..... .+..... +......
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~---~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~-~~~p~l-~s~~~~~-~~~~~La 152 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLS---HPSLIPWFPDKILQALLRRGDPKLALRYLR-AVGPPL-SSPEALT-LYFVALA 152 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhC---CCCCCcccHHHHHHHHHHCCChhHHHHHHH-hcCCCC-CCHHHHH-HHHHHHH
Confidence 33344444 45678888887762 223445543 57888888899999999998 433221 1222222 3333467
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCC
Q 006071 599 AGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (662)
Q Consensus 599 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (662)
.|..-||..+.++..+... ...+..++..+.....
T Consensus 153 ~~~v~EAf~~~R~~~~~~~---~~l~e~l~~~~~~~~~ 187 (226)
T PF13934_consen 153 NGLVTEAFSFQRSYPDELR---RRLFEQLLEHCLEECA 187 (226)
T ss_pred cCCHHHHHHHHHhCchhhh---HHHHHHHHHHHHHHhh
Confidence 7999999999888666432 2344457776665543
No 357
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.81 E-value=39 Score=30.41 Aligned_cols=187 Identities=14% Similarity=0.123 Sum_probs=113.7
Q ss_pred hcCChhHHHHHHHHHhhCCCCC---CHHhHHHHHHHHHhcCChHHHHHHHHHHHHc---CC--CCcHHhHHHHHHHHHhc
Q 006071 426 KEGNPDSAFEIVKIMGRRGVPR---DADAYICLIESYLRKGEPADAKTALDSMIED---GH--SPASSLFRSVMESLFED 497 (662)
Q Consensus 426 ~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~ 497 (662)
+...+++|+.-|+...+..... .......++..+.+.+++++....+.++..- .+ .-+..+.+++++....+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 3457889999999888743221 2345567888999999999998888887631 11 12455677777776666
Q ss_pred CCHHHHHHHHHHHHHc--CCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHhCCC----CCCH---HHHHH-----
Q 006071 498 GRVQTASRVMKSMVEK--GVKENLDLV----AKILEALLMRGHVEEALGRIDLMMQSGS----VPNF---DSLLS----- 559 (662)
Q Consensus 498 g~~~~a~~~~~~~~~~--~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~p~~---~~~~~----- 559 (662)
.+.+--.++++.-++. ..+ |...| ..+...|...|.+.+-.++++++-.+-- ..+. ..++.
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAK-NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAK-NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhh-cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 6666666666655443 111 22222 4677888888888887777777664211 1111 12333
Q ss_pred --HHhccCCHHHHHHHHHHHhcCC-CCCChhhHH----HHHHHHHhcCCHHHHHHHHHHHH
Q 006071 560 --VLSEKGKTIAAVKLLDFCLGRD-CIIDLASYE----KVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 560 --~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
.|-.+.+-..-..++++++... --|.|.... .=+....+.|++++|..-|-...
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 3345566666777788777542 122333332 11234557899999876665544
No 358
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=81.42 E-value=51 Score=31.52 Aligned_cols=27 Identities=15% Similarity=0.060 Sum_probs=16.7
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHHHCC
Q 006071 200 NTMINGYNRFKKMDEAEKLFAEMKEKN 226 (662)
Q Consensus 200 ~~ll~~~~~~g~~~~a~~~~~~~~~~~ 226 (662)
..+...+...|..+.|..+++.+.+.+
T Consensus 158 ~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 158 LRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred HHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 334444556677777777777766654
No 359
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.97 E-value=13 Score=31.22 Aligned_cols=42 Identities=14% Similarity=0.103 Sum_probs=22.0
Q ss_pred CHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 566 KTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 566 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
.+++|..+|+++++. +|+...|..-.+.. .+|-++..++...
T Consensus 95 ~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~------~kap~lh~e~~~~ 136 (186)
T PF06552_consen 95 YFEKATEYFQKAVDE--DPNNELYRKSLEMA------AKAPELHMEIHKQ 136 (186)
T ss_dssp HHHHHHHHHHHHHHH---TT-HHHHHHHHHH------HTHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHhc--CCCcHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 466777777777776 44555554333332 2355555554444
No 360
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=80.58 E-value=13 Score=31.18 Aligned_cols=32 Identities=16% Similarity=-0.067 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhc
Q 006071 36 SEHALQFFRWVERAGLFNHDRETHLKMIEILGRV 69 (662)
Q Consensus 36 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 69 (662)
++.|.+.++.....+ |.+...+..-..++...
T Consensus 7 FE~ark~aea~y~~n--P~DadnL~~WG~ALLEL 38 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN--PLDADNLTNWGGALLEL 38 (186)
T ss_dssp HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--cHhHHHHHHHHHHHHHH
Confidence 567777777766666 77888776666555444
No 361
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=80.44 E-value=52 Score=30.94 Aligned_cols=115 Identities=15% Similarity=-0.005 Sum_probs=65.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC----C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHhc----cCCH
Q 006071 499 RVQTASRVMKSMVEKGVKENLDLVAKILEALLMR----G---HVEEALGRIDLMMQSGSVPNFDSLLSVLSE----KGKT 567 (662)
Q Consensus 499 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~----~g~~ 567 (662)
+..+|..+++.+.+.|..+.......+...|..- + +...|...+.+....+.......+...|.. ..+.
T Consensus 128 d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~ 207 (292)
T COG0790 128 DLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDL 207 (292)
T ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCH
Confidence 6667777777776665543212223344434332 1 224677777777766533334445544432 4488
Q ss_pred HHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcC---------------CHHHHHHHHHHHHHcCC
Q 006071 568 IAAVKLLDFCLGRDCIIDLASYEKVLDALLAAG---------------KTLNAYSILFKIMEKGG 617 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~ 617 (662)
++|..+|+++.+.+. ......+. .++..| +...|...+......+.
T Consensus 208 ~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 208 KKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 899999998888865 33333455 566555 55556666666555544
No 362
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=80.04 E-value=0.9 Score=37.23 Aligned_cols=13 Identities=15% Similarity=-0.187 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHhc
Q 006071 415 VAFNNLIRGHSKE 427 (662)
Q Consensus 415 ~~~~~l~~~~~~~ 427 (662)
...+.++..|++.
T Consensus 43 ~~~~~L~~ly~~~ 55 (143)
T PF00637_consen 43 DLHTLLLELYIKY 55 (143)
T ss_dssp HHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhc
Confidence 3333333333333
No 363
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.67 E-value=41 Score=29.36 Aligned_cols=77 Identities=10% Similarity=0.038 Sum_probs=50.1
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 006071 451 AYICLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV--KENLDLVAKILEA 528 (662)
Q Consensus 451 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 528 (662)
|.+..++.+.+.+...+++...++-++.. +.|...-..++..++-.|+|++|..-++......+ .+-...|..++.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455667777788888888887776643 23445556667778888888888887777765533 3334555555543
No 364
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.23 E-value=3.2 Score=23.07 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=11.9
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHh
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
++.++...|++++|++.++++++
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 44445555555555555555543
No 365
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=78.99 E-value=24 Score=26.33 Aligned_cols=45 Identities=9% Similarity=0.137 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006071 179 TAIRFFEDMKSRGISLDVVTYNTMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 179 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
+..+-++.+....+.|+..+..+.+.+|.+.+++..|.++|+.++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444455555555555555555566666666666666655554
No 366
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=78.40 E-value=1.7e+02 Score=35.81 Aligned_cols=61 Identities=16% Similarity=0.187 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 519 LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-FDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
..+|-..++....+|+++.|...+-...+.+ .|. ....+..+...|+...|+.+++..++.
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3456666666666777777776555554433 333 223455556677777777777766644
No 367
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=78.15 E-value=29 Score=26.64 Aligned_cols=42 Identities=17% Similarity=0.209 Sum_probs=32.1
Q ss_pred cCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 564 KGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 564 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
.++.++..+.+++ ...|..++..|...|.+++|++++.++..
T Consensus 26 ~C~~~~~e~~L~~---------~~~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 26 YCDLEEVEEVLKE---------HGKYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred cCCHHHHHHHHHH---------cCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 3566777666641 23477889999999999999999999887
No 368
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=77.44 E-value=34 Score=27.20 Aligned_cols=72 Identities=10% Similarity=0.112 Sum_probs=46.0
Q ss_pred CCcHHhHHHHHHHHHhcC---CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 006071 481 SPASSLFRSVMESLFEDG---RVQTASRVMKSMVE-KGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 481 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
.++..+-..+..++.++. +.++.+.+++.+.+ ..+.-.......|.-++.+.+++++++++++.+++ ..|++
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~--~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE--TEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh--hCCCc
Confidence 345555555555665544 45667778887775 33443445555567777888888888888888776 55554
No 369
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=77.39 E-value=12 Score=29.60 Aligned_cols=44 Identities=16% Similarity=0.080 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006071 569 AAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFKI 612 (662)
Q Consensus 569 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 612 (662)
++..+|+.+...+.... +..|...+..+...|++++|.++++..
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~G 125 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLG 125 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 78888887777766655 566667777888888888888888763
No 370
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.08 E-value=34 Score=31.11 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=9.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 006071 455 LIESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 455 l~~~~~~~~~~~~a~~~~~~~~ 476 (662)
.|-.|.+.+.+..+.++-..-.
T Consensus 124 CILLysKv~Ep~amlev~~~WL 145 (309)
T PF07163_consen 124 CILLYSKVQEPAAMLEVASAWL 145 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHH
Confidence 3334444444444444444444
No 371
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=75.97 E-value=5.5 Score=21.35 Aligned_cols=28 Identities=21% Similarity=0.126 Sum_probs=19.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 588 SYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
.|..++..+...|++++|...+++.+..
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 3456777777778888888777776643
No 372
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=75.77 E-value=89 Score=31.12 Aligned_cols=43 Identities=14% Similarity=-0.026 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhc
Q 006071 591 KVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQE 634 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 634 (662)
..+-.|...|++..|.+.|.+....- ...+..|-.|..||-+.
T Consensus 340 NcG~~~Lh~grPl~AfqCf~~av~vf-h~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 340 NCGLLYLHSGRPLLAFQCFQKAVHVF-HRNPRLWLRLAECCIMA 382 (696)
T ss_pred hhhHHHHhcCCcHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHH
Confidence 45666677777777777777766542 22444455566665443
No 373
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=74.93 E-value=8.8 Score=23.52 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=9.3
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 006071 456 IESYLRKGEPADAKTALDSMI 476 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~ 476 (662)
..+|...|+.+.|.+++++..
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHH
Confidence 334444444444444444444
No 374
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=73.68 E-value=75 Score=29.27 Aligned_cols=57 Identities=19% Similarity=0.219 Sum_probs=41.4
Q ss_pred HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
....|..+|.+.+|.++.++++..+ +.+...+..++..|...|+--.|.+.++++..
T Consensus 285 va~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 285 VARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4455667888888888888777765 45666677788888888887777777766553
No 375
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.34 E-value=68 Score=28.60 Aligned_cols=100 Identities=10% Similarity=-0.033 Sum_probs=69.1
Q ss_pred hcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCH-HhHHHHHHHHHhcCChHHHHH
Q 006071 392 HNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDA-DAYICLIESYLRKGEPADAKT 470 (662)
Q Consensus 392 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~ 470 (662)
...+++.|...|.+.+...|..+.-|+.-+-++.+..+++.+..--+...+. .||. ...-.+..+......+++|+.
T Consensus 22 ~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~ 99 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIK 99 (284)
T ss_pred chhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHH
Confidence 4456777888888888877777777888888888888888887777776664 3443 344456666777788888888
Q ss_pred HHHHHHH----cCCCCcHHhHHHHHHH
Q 006071 471 ALDSMIE----DGHSPASSLFRSVMES 493 (662)
Q Consensus 471 ~~~~~~~----~~~~~~~~~~~~l~~~ 493 (662)
.+.+... ..+.+.......|..+
T Consensus 100 ~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 100 VLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 8888743 2344444555555554
No 376
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.10 E-value=1.3e+02 Score=31.95 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=13.8
Q ss_pred HHHHHhhcCChHHHHHHHHHHH
Q 006071 202 MINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
|+..|...+++..|..++-...
T Consensus 511 La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHccChHHHHHHHHhcc
Confidence 6666666666666666665544
No 377
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.94 E-value=1.5e+02 Score=32.56 Aligned_cols=115 Identities=18% Similarity=0.268 Sum_probs=70.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHhcC----CCCHHHHHHHHHHHHhcCCh--hHHHHHHHHHhhCCCCCCHHhHH--
Q 006071 382 SYNPMIQHLCHNGQTGKAEIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNP--DSAFEIVKIMGRRGVPRDADAYI-- 453 (662)
Q Consensus 382 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~--~~a~~~~~~~~~~~~~~~~~~~~-- 453 (662)
-|..++..|...|..++|+++|.+..... ..-...+..++..+.+.+.. +-.+++-+.....+..-....+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 58899999999999999999999988743 22223344456655555554 44444444443332111111111
Q ss_pred ----------HHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 006071 454 ----------CLIESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFE 496 (662)
Q Consensus 454 ----------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (662)
.-+-.|.....++-++.+++.+....-.++....+.++..|.+
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 1233455667778888888888865555566666666666543
No 378
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=71.26 E-value=1.5e+02 Score=31.81 Aligned_cols=219 Identities=12% Similarity=0.057 Sum_probs=99.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh-cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 381 SSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK-EGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 381 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
..|..++..+...|.+......++++......+...|.......-. .+-.+.+..+.-...+. .+-...+|.-..-++
T Consensus 313 q~~~~yidfe~~~G~p~ri~l~~eR~~~E~~~~~~~wi~y~~~~d~eLkv~~~~~~~~~ra~R~-cp~tgdL~~rallAl 391 (881)
T KOG0128|consen 313 QEWMSYIDFEKKSGDPVRIQLIEERAVAEMVLDRALWIGYGVYLDTELKVPQRGVSVHPRAVRS-CPWTGDLWKRALLAL 391 (881)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHhccccHHHHhhhhhhcccccccccccccccchhhcC-CchHHHHHHHHHHHH
Confidence 3566777777788888777777777776655554444332221111 11112222222222221 122333343333344
Q ss_pred HhcCCh-HHHHHHHHHHHHcCCC---------------CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006071 460 LRKGEP-ADAKTALDSMIEDGHS---------------PASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (662)
Q Consensus 460 ~~~~~~-~~a~~~~~~~~~~~~~---------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (662)
.+.+.. ......|...+..++. .+...+..+- ..+..|...|.........+......
T Consensus 392 eR~re~~~vI~~~l~~~ls~~~~l~~~~~~~rr~~~~~~~s~~~s~lr------~~F~~A~~eLt~~~~~~~Dt~~~~~q 465 (881)
T KOG0128|consen 392 ERNREEITVIVQNLEKDLSMTVELHNDYLAYRRRCTNIIDSQDYSSLR------AAFNHAWEELTELYGDQLDTRTEVLQ 465 (881)
T ss_pred HhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhHHHHH------HHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 443322 2222223322222111 1111111111 12344555554444332333344444
Q ss_pred HHHHHHH-hCCCHHHHHHHHHHHHhCCCCCCHHHHHH---HHhccCCHHHHHHHHHHHhcCCCCCC--hhhHHHHHHHHH
Q 006071 524 KILEALL-MRGHVEEALGRIDLMMQSGSVPNFDSLLS---VLSEKGKTIAAVKLLDFCLGRDCIID--LASYEKVLDALL 597 (662)
Q Consensus 524 ~l~~~~~-~~g~~~~A~~~~~~~~~~~~~p~~~~~~~---~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 597 (662)
....... ..++.+.++.+++.+...+...--..|+. .-...|+...++.+++++......++ ..++..+-+...
T Consensus 466 ~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R~ay~~~~~~~~~~ev~~~~~r~Er 545 (881)
T KOG0128|consen 466 LWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLRKAYSQVVDPEDALEVLEFFRRFER 545 (881)
T ss_pred HHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHHHHHhcCcCchhHHHHHHHHHHHHh
Confidence 4444443 35688999999887765332211112333 33356889999998888877654443 222222223333
Q ss_pred hcCCHHHHH
Q 006071 598 AAGKTLNAY 606 (662)
Q Consensus 598 ~~g~~~~A~ 606 (662)
..|.++...
T Consensus 546 e~gtl~~~~ 554 (881)
T KOG0128|consen 546 EYGTLESFD 554 (881)
T ss_pred ccccHHHHh
Confidence 345555443
No 379
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=70.88 E-value=18 Score=23.28 Aligned_cols=28 Identities=18% Similarity=0.177 Sum_probs=17.3
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHhCCCCCCH
Q 006071 525 ILEALLMRGHVEEALGRIDLMMQSGSVPNF 554 (662)
Q Consensus 525 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 554 (662)
+.-++.+.|++++|.+.++.+++ ..|++
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N 34 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDN 34 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCc
Confidence 55556677777777777777766 55654
No 380
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=70.88 E-value=77 Score=31.19 Aligned_cols=56 Identities=7% Similarity=0.214 Sum_probs=33.5
Q ss_pred HHHHhcCChHHHHHHHHHHHHcCCCCcHH--hHHHHHHHH--HhcCCHHHHHHHHHHHHHc
Q 006071 457 ESYLRKGEPADAKTALDSMIEDGHSPASS--LFRSVMESL--FEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 457 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~--~~~g~~~~a~~~~~~~~~~ 513 (662)
..+.+.+++..|.++++.+... ++++.. .+..+..+| ...-++++|.+.++.....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3444677778888888777765 444443 233333332 4466777777777776554
No 381
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=70.72 E-value=1.1e+02 Score=29.88 Aligned_cols=140 Identities=14% Similarity=0.116 Sum_probs=80.9
Q ss_pred hcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHH---hcCCh
Q 006071 31 HGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYG---KKGIV 107 (662)
Q Consensus 31 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~ 107 (662)
...+|++.-..+++ .+ |-...++..+..++...|+...|.+++++..-. =..++......+. ..|..
T Consensus 21 v~~~Dp~~l~~ll~----~~--PyHidtLlqls~v~~~~gd~~~A~~lleRALf~----~e~~~~~~F~~~~~~~~~g~~ 90 (360)
T PF04910_consen 21 VQSHDPNALINLLQ----KN--PYHIDTLLQLSEVYRQQGDHAQANDLLERALFA----FERAFHPSFSPFRSNLTSGNC 90 (360)
T ss_pred HHccCHHHHHHHHH----HC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----HHHHHHHHhhhhhcccccCcc
Confidence 34446666555542 22 677788888888999999999888888876531 0001111110000 00000
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHH---HHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-hcCCHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDA---LFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFF-LSLKLETAIRF 183 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~~~a~~~ 183 (662)
. ......-|...|.+ .+..+.+.|.+..|+++.+-+...++.-|+.....+|+.|+ +.++++--+++
T Consensus 91 ---r------L~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~ 161 (360)
T PF04910_consen 91 ---R------LDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDF 161 (360)
T ss_pred ---c------cCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHH
Confidence 0 00001123333333 34566778888888888888887765556666666777665 66777777777
Q ss_pred HHHHHh
Q 006071 184 FEDMKS 189 (662)
Q Consensus 184 ~~~~~~ 189 (662)
.+....
T Consensus 162 ~~~~~~ 167 (360)
T PF04910_consen 162 SESPLA 167 (360)
T ss_pred HHhHhh
Confidence 776554
No 382
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=70.33 E-value=27 Score=27.52 Aligned_cols=44 Identities=20% Similarity=0.148 Sum_probs=30.6
Q ss_pred HHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 568 IAAVKLLDFCLGRDCIID-LASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 568 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
++...+|+.+...+.... ...|...+..+-..|++.+|.++++.
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~~ 124 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQL 124 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 446667777777766655 45566677777788888888887753
No 383
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=68.70 E-value=49 Score=25.07 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=51.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006071 32 GAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESV 111 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 111 (662)
.....++|-.+.+|+...+ .....+--.-+..+.+.|+|++|... - .....||...|..+. -.+.|--+.+.
T Consensus 18 G~HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~--~--~~~~~pdL~p~~AL~--a~klGL~~~~e 89 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLL--P--QCHCYPDLEPWAALC--AWKLGLASALE 89 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHH--H--TTS--GGGHHHHHHH--HHHCT-HHHHH
T ss_pred hhHHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHh--c--ccCCCccHHHHHHHH--HHhhccHHHHH
Confidence 3447899999999998765 22333444445667789999999322 1 222346777776654 35788888888
Q ss_pred HHHHHHHHcC
Q 006071 112 KIFDIMKQLG 121 (662)
Q Consensus 112 ~~~~~~~~~g 121 (662)
..+.++...|
T Consensus 90 ~~l~rla~~g 99 (116)
T PF09477_consen 90 SRLTRLASSG 99 (116)
T ss_dssp HHHHHHCT-S
T ss_pred HHHHHHHhCC
Confidence 8888887655
No 384
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=68.64 E-value=85 Score=27.82 Aligned_cols=65 Identities=12% Similarity=0.054 Sum_probs=35.5
Q ss_pred HHHHHHHHHHhCCCH-------HHHHHHHHHHHhCCCCCC----HHH----HHHHHhccCCHHHHHHHHHHHhcCCCCCC
Q 006071 521 LVAKILEALLMRGHV-------EEALGRIDLMMQSGSVPN----FDS----LLSVLSEKGKTIAAVKLLDFCLGRDCIID 585 (662)
Q Consensus 521 ~~~~l~~~~~~~g~~-------~~A~~~~~~~~~~~~~p~----~~~----~~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 585 (662)
.+-.+.+.|...|+. ..|++.|.+..+....|. ..+ ++....+.|+.++|.++|.+++.......
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 344556666666653 345555555554322222 112 22333467888888888888887643333
No 385
>PRK09687 putative lyase; Provisional
Probab=68.31 E-value=1e+02 Score=28.72 Aligned_cols=17 Identities=12% Similarity=0.153 Sum_probs=7.5
Q ss_pred cCHHhHHHHHHHHHHcC
Q 006071 124 RSVKSYDALFKLILRRG 140 (662)
Q Consensus 124 ~~~~~~~~l~~~~~~~g 140 (662)
++.......+.++...|
T Consensus 35 ~d~~vR~~A~~aL~~~~ 51 (280)
T PRK09687 35 HNSLKRISSIRVLQLRG 51 (280)
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 44444444444444444
No 386
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.18 E-value=64 Score=26.26 Aligned_cols=80 Identities=18% Similarity=0.306 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhcC------CCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHhhCCCCCCHHhHHHH
Q 006071 383 YNPMIQHLCHNGQTGKAEIFFRQLMKKG------VLDPVAFNNLIRGHSKEGN-PDSAFEIVKIMGRRGVPRDADAYICL 455 (662)
Q Consensus 383 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 455 (662)
.+.++......++......+++.+.... ..+...|.+++.+.++... --.+..+|.-+.+.+.++++.-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3455555555566666655555553222 2344456666666654444 22345556666655566666666666
Q ss_pred HHHHHhc
Q 006071 456 IESYLRK 462 (662)
Q Consensus 456 ~~~~~~~ 462 (662)
+.++.+.
T Consensus 122 i~~~l~g 128 (145)
T PF13762_consen 122 IKAALRG 128 (145)
T ss_pred HHHHHcC
Confidence 6666553
No 387
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=67.63 E-value=25 Score=35.49 Aligned_cols=148 Identities=14% Similarity=0.167 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHhhHHHH--HHHH-HhcCCHHHHHHHHHHHhhCCCCCCHHH
Q 006071 194 LDVVTYNTMINGYNRF--KKMDEAEKLFAEMKEKNIEPTVISYTTM--IKGY-VAVERADDALRIFDEMKSFDVKPNAVT 268 (662)
Q Consensus 194 ~~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~ 268 (662)
|+..+...++.-.... ...+-+-.++..|.. |+...|.+| ...| .-.|+...|...+.......-.-..+.
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 4555554444333221 223344455555543 333333222 2233 345777778777766654321112234
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006071 269 YTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAGHYGILIENFC 348 (662)
Q Consensus 269 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 348 (662)
...+.....+.|....|..++.+.+.-. ...+-++..+.+++....+.+.|++.|++..+.. +.+..+-+.|...-|
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~--~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN--SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc--ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 4555566666677777777777666643 2255667777888888888888888888877754 444555555554444
No 388
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=67.49 E-value=1e+02 Score=28.45 Aligned_cols=136 Identities=15% Similarity=0.126 Sum_probs=93.5
Q ss_pred ChhHHHHHHHHHHH-cCCCcCHHhHHHHHHHHHH-cCC-hhHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006071 106 IVQESVKIFDIMKQ-LGVERSVKSYDALFKLILR-RGR-YMMAKRYFNKMLSE-GIEPTRHTYNVMLWGFFLSLKLETAI 181 (662)
Q Consensus 106 ~~~~A~~~~~~~~~-~g~~~~~~~~~~l~~~~~~-~g~-~~~A~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~ 181 (662)
.+.+|+.+|+.... ..+-.|...-..+++.... .+. ...-.++.+-+... |..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45667777773221 1244677777777777766 222 22233344444322 45678888899999999999999999
Q ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHhhcCChHHHHHHHHH-----HHHCCCCCCHhhHHHHHHHH
Q 006071 182 RFFEDMKSR-GISLDVVTYNTMINGYNRFKKMDEAEKLFAE-----MKEKNIEPTVISYTTMIKGY 241 (662)
Q Consensus 182 ~~~~~~~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-----~~~~~~~~~~~~~~~l~~~~ 241 (662)
++++..... +..-|...|..+|......|+..-...+.++ +.+.+++.+...-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 999988766 6667899999999999999998888877765 23445665555555544444
No 389
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=67.47 E-value=58 Score=34.27 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHH
Q 006071 196 VVTYNTMINGYNRFKKMDEAEKLFAEM 222 (662)
Q Consensus 196 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 222 (662)
...-.-++..|.+.|-.+.+.++.+.+
T Consensus 405 ~~~~~k~l~iC~~~~L~~~a~~I~~~~ 431 (566)
T PF07575_consen 405 NDDAEKLLEICAELGLEDVAREICKIL 431 (566)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 333344444444444444444444443
No 390
>PRK10941 hypothetical protein; Provisional
Probab=67.09 E-value=65 Score=29.72 Aligned_cols=75 Identities=16% Similarity=-0.063 Sum_probs=47.6
Q ss_pred HHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCcHhhHHHHHHHH
Q 006071 556 SLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGG-VTDWKSSDKLIAGL 631 (662)
Q Consensus 556 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~ 631 (662)
.+-.++.+.++++.|+++.+.++...| .++.-+-..+-.|.+.|.+..|..=++..++..+ .|+.......+..+
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~P-~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l 261 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFDP-EDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSI 261 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence 344566677888888888887777653 3444455677778888888888888888776543 23333333333333
No 391
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=65.96 E-value=1.1e+02 Score=28.22 Aligned_cols=42 Identities=17% Similarity=0.182 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 006071 248 DDALRIFDEMKSFDVKPNAVTYTALLPGLCDAGKMVEVQKVLRE 291 (662)
Q Consensus 248 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 291 (662)
.+|.++|.-+..+. --+.+-..++.++-...+...|...+..
T Consensus 150 ~KA~ELFayLv~hk--gk~v~~~~~ie~lwpe~D~kka~s~lhT 191 (361)
T COG3947 150 RKALELFAYLVEHK--GKEVTSWEAIEALWPEKDEKKASSLLHT 191 (361)
T ss_pred hHHHHHHHHHHHhc--CCcccHhHHHHHHccccchhhHHHHHHH
Confidence 57777777776542 2234445556666666666666655543
No 392
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=65.74 E-value=1.2e+02 Score=28.48 Aligned_cols=182 Identities=14% Similarity=0.038 Sum_probs=102.5
Q ss_pred cCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHh----cCC
Q 006071 393 NGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSK----EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLR----KGE 464 (662)
Q Consensus 393 ~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 464 (662)
.+.+..+...+......+.+ .....+...|.. ..+...|..+++.+.+.|. ......|...|.. ..+
T Consensus 54 ~~~~~~a~~~~~~a~~~~~~--~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~~d 128 (292)
T COG0790 54 PPDYAKALKSYEKAAELGDA--AALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVPLD 128 (292)
T ss_pred cccHHHHHHHHHHhhhcCCh--HHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcccC
Confidence 34555666666665554322 334444444433 3457778888887776653 3334445555554 337
Q ss_pred hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhc-----C--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----CC
Q 006071 465 PADAKTALDSMIEDGHSPASSLFRSVMESLFED-----G--RVQTASRVMKSMVEKGVKENLDLVAKILEALLM----RG 533 (662)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 533 (662)
..+|...+.++.+.|..+...+...+...+... - +...|...+.++...+ +......+...|.. ..
T Consensus 129 ~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~ 205 (292)
T COG0790 129 LVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPR 205 (292)
T ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCc
Confidence 788888888888877554312222333333221 1 2346888888877765 33444445555533 23
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHhccC---------------CHHHHHHHHHHHhcCCCC
Q 006071 534 HVEEALGRIDLMMQSGSVPNFDSLLSVLSEKG---------------KTIAAVKLLDFCLGRDCI 583 (662)
Q Consensus 534 ~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 583 (662)
++.+|...|++..+.+. +.....+..+...| +...|...+..+...++.
T Consensus 206 d~~~A~~wy~~Aa~~g~-~~a~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD-GAACYNLGLMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred CHHHHHHHHHHHHHCCC-HHHHHHHHHHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 78888888888888666 33333333444444 556666666655555433
No 393
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=65.55 E-value=17 Score=25.69 Aligned_cols=50 Identities=18% Similarity=0.095 Sum_probs=38.0
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCC--cHhhHHHHHHHHHhcCCcchhHHHHH
Q 006071 596 LLAAGKTLNAYSILFKIMEKGGVT--DWKSSDKLIAGLNQEGNTKQADILSR 645 (662)
Q Consensus 596 ~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~ 645 (662)
++...+..+|+..+++.+++...+ -+.++-.|+.+|..-|++++...++-
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~ 67 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL 67 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557889999999999999876543 23344457888999999999866543
No 394
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=65.50 E-value=1.2e+02 Score=28.47 Aligned_cols=21 Identities=5% Similarity=-0.023 Sum_probs=11.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCC
Q 006071 598 AAGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 598 ~~g~~~~A~~~~~~~~~~~~~ 618 (662)
...++.+|..+|-..+..-.+
T Consensus 193 svR~Fk~Aa~Lfld~vsTFtS 213 (393)
T KOG0687|consen 193 SVRNFKEAADLFLDSVSTFTS 213 (393)
T ss_pred HHHhHHHHHHHHHHHcccccc
Confidence 345666666666665554443
No 395
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.22 E-value=64 Score=28.81 Aligned_cols=102 Identities=12% Similarity=-0.012 Sum_probs=0.0
Q ss_pred HHHHhccCCHHHHHHHHHHHh---------cCCCCCC--------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc
Q 006071 558 LSVLSEKGKTIAAVKLLDFCL---------GRDCIID--------LASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTD 620 (662)
Q Consensus 558 ~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 620 (662)
++-+.+.|++++|..-+..++ ++..++. ...+..+.+++...|++.++++....++...+. .
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~-n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPG-N 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCc-h
Q ss_pred HhhHHHHHHHHHhcCCcchh-HHHHHHhhhhccccchhhhh
Q 006071 621 WKSSDKLIAGLNQEGNTKQA-DILSRMIRGEMSRGSQKEKK 660 (662)
Q Consensus 621 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~~~~~~~~~~~ 660 (662)
.++|..-..+.....+..+| .-+...+.-.++-.+...++
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrE 304 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRE 304 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHH
No 396
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.19 E-value=2.2e+02 Score=31.41 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=23.4
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccC
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKK 85 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 85 (662)
-|..++..|...|+.++|+++|.+..+.
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~ 533 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDE 533 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhcc
Confidence 5788888888899999999998888763
No 397
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=64.96 E-value=2.1e+02 Score=31.13 Aligned_cols=196 Identities=13% Similarity=0.046 Sum_probs=106.0
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCH-------HHHHHHH-HHHhhcCChHHHHHHHHHHHHC----CCCCCHhhHHHHHH
Q 006071 172 FLSLKLETAIRFFEDMKSRGISLDV-------VTYNTMI-NGYNRFKKMDEAEKLFAEMKEK----NIEPTVISYTTMIK 239 (662)
Q Consensus 172 ~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 239 (662)
....++++|..++.++...-..|+. ..|+.+- ......|+++.|.++.+..... -..+....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 4568899999998887765333222 2334332 2334578999999888887653 12234556777788
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCCHHHHH---HH--HHHHHhCCCH--HHHHHHHHHHHHcCC--CCC---cHHHHHH
Q 006071 240 GYVAVERADDALRIFDEMKSFDVKPNAVTYT---AL--LPGLCDAGKM--VEVQKVLREMVERYI--PPK---DNSVFMK 307 (662)
Q Consensus 240 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---~l--l~~~~~~g~~--~~a~~~~~~~~~~~~--~~~---~~~~~~~ 307 (662)
+..-.|++++|..+..+..+..-.-+...+. .+ ...+...|+. ...+..+........ .|. -..+...
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8888999999998887765432122333222 22 2234556632 233333333322211 111 1233444
Q ss_pred HHHHHHhc-CChHHHHHHHHHHHhCCCCCChhhH--HHHHHHHHcCCcHHHHHHHHHHHHHhh
Q 006071 308 LLGVQCKS-GHLNAAADVLKAMIRLSIPTEAGHY--GILIENFCKAEMYDRAIKLLDKLVEKE 367 (662)
Q Consensus 308 l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~ 367 (662)
++.++.+. +...++..-++-.......+-.... ..++..+...|++++|...+.++..-.
T Consensus 586 ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~ 648 (894)
T COG2909 586 LLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLL 648 (894)
T ss_pred HHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 44555441 1112222222222211111212222 256778888999999999999886543
No 398
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=64.49 E-value=1.5e+02 Score=29.03 Aligned_cols=55 Identities=18% Similarity=0.133 Sum_probs=27.0
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH-hcCChHHHHHHHHHH
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL-RKGEPADAKTALDSM 475 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~ 475 (662)
+..+.+.|.+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+.+.+..
T Consensus 110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 3344555555555555555555443334444444444443 444555444444443
No 399
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.48 E-value=2e+02 Score=30.71 Aligned_cols=102 Identities=14% Similarity=0.076 Sum_probs=55.1
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHhc
Q 006071 168 LWGFFLSLKLETAIRFFEDMKSRGISL---DVVTYNTMINGYNRFKKMDEAEKLFAEMKEKNIEPTVISYTTMIKGYVAV 244 (662)
Q Consensus 168 l~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 244 (662)
++.+.+.+.+++|+.+.+..... .| -...+..++..+...|++++|-...-.|... +..-|...+..+...
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e~ 436 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAEL 436 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhccc
Confidence 44555666677776665554432 22 2345566666667777777777766666643 555566555555555
Q ss_pred CCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Q 006071 245 ERADDALRIFDEMKSFDVKPNAVTYTALLPGLCD 278 (662)
Q Consensus 245 ~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 278 (662)
++......+ +....-..++..|..++..+..
T Consensus 437 ~~l~~Ia~~---lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 437 DQLTDIAPY---LPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccchhhcc---CCCCCcccCchHHHHHHHHHHH
Confidence 554432222 2211112244566666666554
No 400
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=64.16 E-value=28 Score=35.16 Aligned_cols=87 Identities=11% Similarity=0.064 Sum_probs=42.7
Q ss_pred HhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 006071 460 LRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEAL 539 (662)
Q Consensus 460 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 539 (662)
.-.|+...|...+............+....+...+.+.|..-+|-.++.+.+..... .+-++..+.+++....+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-epl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-EPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc-CchHHHhcchhHHHHhhhHHHH
Confidence 344555566555555543221112233344444555555555555555555544322 2333344555555555666666
Q ss_pred HHHHHHHh
Q 006071 540 GRIDLMMQ 547 (662)
Q Consensus 540 ~~~~~~~~ 547 (662)
+.++...+
T Consensus 697 ~~~~~a~~ 704 (886)
T KOG4507|consen 697 EAFRQALK 704 (886)
T ss_pred HHHHHHHh
Confidence 66655554
No 401
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.99 E-value=40 Score=33.09 Aligned_cols=27 Identities=22% Similarity=0.172 Sum_probs=16.2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIM 613 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 613 (662)
..++.++-+|...+++.+|++.|..++
T Consensus 165 s~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 165 STYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666666666666666666644
No 402
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=63.90 E-value=37 Score=21.91 Aligned_cols=26 Identities=12% Similarity=-0.059 Sum_probs=20.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006071 591 KVLDALLAAGKTLNAYSILFKIMEKG 616 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 616 (662)
.++-++++.|++++|.+.++.+++..
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 47778888999999999988888764
No 403
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=63.64 E-value=17 Score=21.05 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=17.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHH
Q 006071 588 SYEKVLDALLAAGKTLNAYSILF 610 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~ 610 (662)
.+..++-.+...|++++|+++++
T Consensus 3 ~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 3 YLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 34567888888999999998854
No 404
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=63.25 E-value=58 Score=24.16 Aligned_cols=60 Identities=13% Similarity=0.126 Sum_probs=32.7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHhccC
Q 006071 504 SRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDSLLSVLSEKG 565 (662)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~g 565 (662)
.+.++++...+....+.....|.-.|.+.|+.+.|++-|+.=.. .-|....+++.+.+++
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKa--lFPES~~fmDFLmk~~ 116 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKA--LFPESGVFMDFLMKNG 116 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhh--hCccchhHHHHHHHcc
Confidence 34445554443333334445566667777777777766654332 5566556666555443
No 405
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=62.99 E-value=5.2 Score=37.15 Aligned_cols=91 Identities=9% Similarity=-0.020 Sum_probs=49.1
Q ss_pred hcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCcCH-HhHHHHHHHHHHcCChhHHH
Q 006071 68 RVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIVQESVKIFDIMKQLGVERSV-KSYDALFKLILRRGRYMMAK 146 (662)
Q Consensus 68 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~-~~~~~l~~~~~~~g~~~~A~ 146 (662)
..|.++.|++.|-..+...+ +....|..-.+++.+.+....|++-++.....+ ||. ..|-.--.+..-.|+|++|.
T Consensus 126 n~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein--~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEIN--PDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccC--cccccccchhhHHHHHhhchHHHH
Confidence 45566666666666655433 244455555556666666666666666665532 322 22332333334456666666
Q ss_pred HHHHHHHhCCCCcCH
Q 006071 147 RYFNKMLSEGIEPTR 161 (662)
Q Consensus 147 ~~~~~~~~~~~~~~~ 161 (662)
..|....+.+..+..
T Consensus 203 ~dl~~a~kld~dE~~ 217 (377)
T KOG1308|consen 203 HDLALACKLDYDEAN 217 (377)
T ss_pred HHHHHHHhccccHHH
Confidence 666666665554433
No 406
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=62.94 E-value=1.3e+02 Score=27.77 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHh----CCCCCCH----HHHHHHHhccCCHHHHHHHHHHHhcCCCCCC----h
Q 006071 519 LDLVAKILEALLMRGHVEEALGRIDLMMQ----SGSVPNF----DSLLSVLSEKGKTIAAVKLLDFCLGRDCIID----L 586 (662)
Q Consensus 519 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~p~~----~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~ 586 (662)
.+.+..+..-|++.++.+.+.+...+... .|.+.|. ..++..|....-.++-++..+-+++.|..-+ -
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 44455566666666666666655444332 2333331 1123333333334444444444555543332 1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHH
Q 006071 587 ASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSD 625 (662)
Q Consensus 587 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 625 (662)
..|. +--++...++.+|..++-.++..-.+....+|.
T Consensus 195 K~Y~--Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~ 231 (412)
T COG5187 195 KVYK--GIFKMMRRNFKEAAILLSDILPTFESSELISYS 231 (412)
T ss_pred HHHH--HHHHHHHHhhHHHHHHHHHHhccccccccccHH
Confidence 2221 122233456666666666666554443333333
No 407
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=62.45 E-value=1.2e+02 Score=27.22 Aligned_cols=78 Identities=15% Similarity=0.134 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHcCCcHHHHHHHH
Q 006071 282 MVEVQKVLREMVERYIPPKDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLSIPTEAG-HYGILIENFCKAEMYDRAIKLL 360 (662)
Q Consensus 282 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~ 360 (662)
++.|+..|.+.+.. .|.....|..-+.++.+..+++.+..--...++. .|+.. ....+..++.....++.|+..+
T Consensus 26 y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~L 101 (284)
T KOG4642|consen 26 YDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKVL 101 (284)
T ss_pred hchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHHH
Confidence 33444433333332 3333344444444444444444444333333332 22221 1222333344444555555555
Q ss_pred HHH
Q 006071 361 DKL 363 (662)
Q Consensus 361 ~~~ 363 (662)
.+.
T Consensus 102 qra 104 (284)
T KOG4642|consen 102 QRA 104 (284)
T ss_pred HHH
Confidence 554
No 408
>PRK10941 hypothetical protein; Provisional
Probab=62.34 E-value=87 Score=28.94 Aligned_cols=65 Identities=11% Similarity=0.098 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh-CCCCCC
Q 006071 488 RSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQ-SGSVPN 553 (662)
Q Consensus 488 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~ 553 (662)
+.+-.+|.+.++++.|.++.+.++...+. ++.-+..-+-.|.+.|.+..|..-++..++ .+-.|+
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~-dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~ 250 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPE-DPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPI 250 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchh
Confidence 34445667777777777777777776555 455555556667777777777776666654 333443
No 409
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=62.13 E-value=57 Score=24.14 Aligned_cols=53 Identities=17% Similarity=0.204 Sum_probs=26.3
Q ss_pred HhcCCHHHHHHHHHHHHHc----CCCCC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 495 FEDGRVQTASRVMKSMVEK----GVKEN----LDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 495 ~~~g~~~~a~~~~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
.+.|++..|.+.+.+..+. +.... ....-.+.......|++++|++.+++.+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4566666665555555433 11110 11112244445566677777666665554
No 410
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=62.04 E-value=1.3e+02 Score=27.65 Aligned_cols=119 Identities=17% Similarity=0.128 Sum_probs=69.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHH---H-----HHHHHHHHhCCCHHHHHHHHHHHHh--CCCCCCHH
Q 006071 491 MESLFEDGRVQTASRVMKSMVEK-----GVKENLDL---V-----AKILEALLMRGHVEEALGRIDLMMQ--SGSVPNFD 555 (662)
Q Consensus 491 ~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~---~-----~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~p~~~ 555 (662)
.+-+.-..|+..|.+..++..+. ....+... + ..=++++...++|.+++.-.-+--+ ..+.|.+-
T Consensus 42 ad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~pEklPpkIl 121 (309)
T PF07163_consen 42 ADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQVPEKLPPKIL 121 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHH
Confidence 33455677888888888877654 11111111 1 1236788888999888764333222 22444443
Q ss_pred H-HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHH-----hcCCHHHHHHHH
Q 006071 556 S-LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALL-----AAGKTLNAYSIL 609 (662)
Q Consensus 556 ~-~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~ 609 (662)
. -+-.|.+.|......++...=+....+-+...|..++..|. -.|.++||.+++
T Consensus 122 eLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 122 ELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHhccccHHHHHHHH
Confidence 3 34456678888777776663333211222344666666655 489999998887
No 411
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.63 E-value=1.5e+02 Score=33.29 Aligned_cols=121 Identities=17% Similarity=0.140 Sum_probs=71.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC-------HHH
Q 006071 487 FRSVMESLFEDGRVQTASRVMKSMVEK-GV-KEN-LDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPN-------FDS 556 (662)
Q Consensus 487 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~-------~~~ 556 (662)
|..++..+.+.+-.+.+.++-..+++. +. .|. ..+++.++.-....|++-+|...+- -.|+ ...
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~------~npdserrrdcLRq 1059 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAIL------RNPDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHH------cCCcHHHHHHHHHH
Confidence 556666677778888888877777765 21 122 3345677777888888877776543 2333 123
Q ss_pred HHHHHhccCCH------------HHHHH-HHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHH
Q 006071 557 LLSVLSEKGKT------------IAAVK-LLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSI-LFKIM 613 (662)
Q Consensus 557 ~~~~~~~~g~~------------~~A~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~ 613 (662)
++-.+++.|.+ ++... +++.+....+......|..|-.-+.+.+++.+|..+ ++..+
T Consensus 1060 lvivLfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvMYEyam 1130 (1480)
T KOG4521|consen 1060 LVIVLFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVMYEYAM 1130 (1480)
T ss_pred HHHHHHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 44444444443 44555 556555555555566665555555667777776544 44433
No 412
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.46 E-value=2.5e+02 Score=30.66 Aligned_cols=40 Identities=15% Similarity=0.061 Sum_probs=30.9
Q ss_pred hHHHHHHHHHhcCCcchhHHHHHHhhhhccccchhhhhcC
Q 006071 623 SSDKLIAGLNQEGNTKQADILSRMIRGEMSRGSQKEKKQK 662 (662)
Q Consensus 623 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 662 (662)
+.+.-+..+.+.++++.|..+++.+.++.++++..+.+||
T Consensus 1086 alrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q~rk 1125 (1202)
T KOG0292|consen 1086 ALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQARK 1125 (1202)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHHHHH
Confidence 3444667788889999999999999888888887766553
No 413
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=61.19 E-value=75 Score=24.94 Aligned_cols=41 Identities=12% Similarity=0.312 Sum_probs=23.7
Q ss_pred HHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 473 DSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 473 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
.......+.|++......+.+|.+.+|+..|.++|+-+..+
T Consensus 73 N~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 73 NNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 33333355566666666666666666666666666655443
No 414
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=60.07 E-value=7.8 Score=36.08 Aligned_cols=96 Identities=14% Similarity=0.017 Sum_probs=69.4
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHH
Q 006071 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKT 470 (662)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 470 (662)
...|.++.|++.|...+...++....|..-.+++.+.+.+..|++-+......+.. +...|-.-..+..-.|+|++|..
T Consensus 125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHHHH
Confidence 35577888888888888888888888888888888888888888887777765322 22344444445556788888888
Q ss_pred HHHHHHHcCCCCcHHhH
Q 006071 471 ALDSMIEDGHSPASSLF 487 (662)
Q Consensus 471 ~~~~~~~~~~~~~~~~~ 487 (662)
.+....+.++.+....+
T Consensus 204 dl~~a~kld~dE~~~a~ 220 (377)
T KOG1308|consen 204 DLALACKLDYDEANSAT 220 (377)
T ss_pred HHHHHHhccccHHHHHH
Confidence 88888877766554433
No 415
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=58.54 E-value=25 Score=24.69 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=6.5
Q ss_pred cCCHHHHHHHHHHHh
Q 006071 564 KGKTIAAVKLLDFCL 578 (662)
Q Consensus 564 ~g~~~~A~~~~~~~~ 578 (662)
.|++++|..++..++
T Consensus 19 ~gny~eA~~lY~~al 33 (75)
T cd02680 19 KGNAEEAIELYTEAV 33 (75)
T ss_pred hhhHHHHHHHHHHHH
Confidence 344444444444333
No 416
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.58 E-value=2.1e+02 Score=28.68 Aligned_cols=159 Identities=17% Similarity=0.109 Sum_probs=92.3
Q ss_pred HhcCChhHHHHHHHHHHhcC--CCCHH--------HHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH--hHHHHHHH
Q 006071 391 CHNGQTGKAEIFFRQLMKKG--VLDPV--------AFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD--AYICLIES 458 (662)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~--~~~~~--------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~ 458 (662)
.-.|++.+|++-..+|.... .|.+. .-..+...++..+.++.|...|....+.--.-|.. .-..+...
T Consensus 334 lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~ 413 (629)
T KOG2300|consen 334 LVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAIS 413 (629)
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHH
Confidence 45689999999888888765 33321 22333344556788999998888776642222332 22345667
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHH--------HH--HHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSV--------ME--SLFEDGRVQTASRVMKSMVEKGVKEN-----LDLVA 523 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--------~~--~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~ 523 (662)
|.+.|+-+.-.++++.+- +++..++.+. +. -....+++.+|...+.+.++..-..+ .-...
T Consensus 414 YL~~~~~ed~y~~ld~i~----p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~Lv 489 (629)
T KOG2300|consen 414 YLRIGDAEDLYKALDLIG----PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLV 489 (629)
T ss_pred HHHhccHHHHHHHHHhcC----CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHH
Confidence 888888777777777652 1222222111 11 12467899999999888776521111 11122
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHh-CCCCCC
Q 006071 524 KILEALLMRGHVEEALGRIDLMMQ-SGSVPN 553 (662)
Q Consensus 524 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~p~ 553 (662)
.+...+...|+..++.+...-..+ ..-.||
T Consensus 490 LLs~v~lslgn~~es~nmvrpamqlAkKi~D 520 (629)
T KOG2300|consen 490 LLSHVFLSLGNTVESRNMVRPAMQLAKKIPD 520 (629)
T ss_pred HHHHHHHHhcchHHHHhccchHHHHHhcCCC
Confidence 334445567777777766554433 334555
No 417
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=57.49 E-value=73 Score=33.53 Aligned_cols=97 Identities=8% Similarity=-0.026 Sum_probs=44.7
Q ss_pred CHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006071 125 SVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDVVTYNTMIN 204 (662)
Q Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 204 (662)
+...|..-+..+...++.. ....+.++..-+-.+...-..++..|.+.|-.+.+..+++.+..+-. ...-|..-+.
T Consensus 371 ~~~lW~vai~yL~~c~~~g--~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~ 446 (566)
T PF07575_consen 371 HHSLWQVAIGYLSSCPDEG--RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALS 446 (566)
T ss_dssp -TTTHHHHHHHHHS-SSS---HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CcchHHHHHHHHHHCChhh--HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHH
Confidence 3344666665555544333 55555555443344555667777788888888888888877765522 3445666777
Q ss_pred HHhhcCChHHHHHHHHHHHHC
Q 006071 205 GYNRFKKMDEAEKLFAEMKEK 225 (662)
Q Consensus 205 ~~~~~g~~~~a~~~~~~~~~~ 225 (662)
.+.+.|+...+..+.+.+.+.
T Consensus 447 ~~~ra~d~~~v~~i~~~ll~~ 467 (566)
T PF07575_consen 447 WFIRAGDYSLVTRIADRLLEE 467 (566)
T ss_dssp HHH------------------
T ss_pred HHHHCCCHHHHHHHHHHHHHH
Confidence 778888887777776666543
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=57.16 E-value=87 Score=24.63 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=18.5
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006071 154 SEGIEPTRHTYNVMLWGFFLSLKLETAIRFFEDMK 188 (662)
Q Consensus 154 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 188 (662)
..++-|++......+++|-+.+++..|.++|+-++
T Consensus 77 ~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 77 DYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred ccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 33444555555555555555555555555555544
No 419
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=57.15 E-value=2.7e+02 Score=29.72 Aligned_cols=25 Identities=8% Similarity=-0.069 Sum_probs=15.9
Q ss_pred HHHHHHhcCCcchhHHHHHHhhhhc
Q 006071 627 LIAGLNQEGNTKQADILSRMIRGEM 651 (662)
Q Consensus 627 l~~~~~~~g~~~~a~~~~~~~~~~~ 651 (662)
.+.+-.-+.++.+|...++++.++.
T Consensus 372 y~~asVLAnd~~kaiqAae~mfKLk 396 (1226)
T KOG4279|consen 372 YFEASVLANDYQKAIQAAEMMFKLK 396 (1226)
T ss_pred hhhhhhhccCHHHHHHHHHHHhccC
Confidence 4445555667777777777766654
No 420
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=56.76 E-value=27 Score=34.45 Aligned_cols=104 Identities=8% Similarity=-0.105 Sum_probs=63.9
Q ss_pred HHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHHHHHHHHHHHHhcCCh
Q 006071 28 NVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDEDMFEVLIESYGKKGIV 107 (662)
Q Consensus 28 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 107 (662)
......+.++.|..+|..+++.+ |..+..|..-..++.+.+++..|..=+...++..+. ....|..-..++.+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~ld--pnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELD--PNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEF 88 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcC--CcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHH
Confidence 34456677888888888888876 556666666667777888888877766666665422 223333333444455566
Q ss_pred hHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 108 QESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 108 ~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
.+|...|+.... +.|+..-....+.-|
T Consensus 89 ~~A~~~l~~~~~--l~Pnd~~~~r~~~Ec 115 (476)
T KOG0376|consen 89 KKALLDLEKVKK--LAPNDPDATRKIDEC 115 (476)
T ss_pred HHHHHHHHHhhh--cCcCcHHHHHHHHHH
Confidence 666666666655 346655555555444
No 421
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=56.44 E-value=31 Score=23.13 Aligned_cols=30 Identities=20% Similarity=0.205 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 586 LASYEKVLDALLAAGKTLNAYSILFKIMEK 615 (662)
Q Consensus 586 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 615 (662)
....-.++.+|...|++++|.++++++...
T Consensus 23 ~~NhLqvI~gllqlg~~~~a~eYi~~~~~~ 52 (62)
T PF14689_consen 23 FLNHLQVIYGLLQLGKYEEAKEYIKELSKD 52 (62)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 334446677777788888887777776543
No 422
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=56.28 E-value=1.2e+02 Score=29.96 Aligned_cols=57 Identities=19% Similarity=0.249 Sum_probs=41.8
Q ss_pred HHHHHhcCChhHHHHHHHHHhhCCCCCCHH--hHHHHHHHHH--hcCChHHHHHHHHHHHHc
Q 006071 421 IRGHSKEGNPDSAFEIVKIMGRRGVPRDAD--AYICLIESYL--RKGEPADAKTALDSMIED 478 (662)
Q Consensus 421 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 478 (662)
+..+.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455889999999999999986 555554 4455555554 456788999999988754
No 423
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=56.21 E-value=1.8e+02 Score=27.36 Aligned_cols=23 Identities=4% Similarity=0.281 Sum_probs=10.0
Q ss_pred HHHHHHhhcCChHHHHHHHHHHH
Q 006071 201 TMINGYNRFKKMDEAEKLFAEMK 223 (662)
Q Consensus 201 ~ll~~~~~~g~~~~a~~~~~~~~ 223 (662)
.|+.++....-+.++..++.+..
T Consensus 316 NLiEalLE~QAYADvqavLakYD 338 (556)
T KOG3807|consen 316 NLLEALLELQAYADVQAVLAKYD 338 (556)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34444444444444444444433
No 424
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=56.18 E-value=60 Score=24.05 Aligned_cols=59 Identities=14% Similarity=0.116 Sum_probs=29.0
Q ss_pred HcCCcHHHHHHHHHHHHHhhhhccCCCCCCCc----cccHHHHHHHHHhcCChhHHHHHHHHHHhcC
Q 006071 348 CKAEMYDRAIKLLDKLVEKEIILRPQSTLDME----ASSYNPMIQHLCHNGQTGKAEIFFRQLMKKG 410 (662)
Q Consensus 348 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 410 (662)
.+.|++..|.+.+.+..+... ....... ....-.+.......|++++|...++..++..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~----~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAK----QSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHh----hcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 456777777766666654432 1111110 1111223334445566666666666665543
No 425
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=55.67 E-value=32 Score=18.59 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=18.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCHHhHHHHHH
Q 006071 34 KNSEHALQFFRWVERAGLFNHDRETHLKMIE 64 (662)
Q Consensus 34 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (662)
|+++.|..+|+.++... |.++..|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~--~~~~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKF--PKSVELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHC--CCChHHHHHHHH
Confidence 35666777777776654 456666665554
No 426
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=55.04 E-value=51 Score=22.61 Aligned_cols=15 Identities=20% Similarity=0.246 Sum_probs=7.9
Q ss_pred cCCHHHHHHHHHHHH
Q 006071 599 AGKTLNAYSILFKIM 613 (662)
Q Consensus 599 ~g~~~~A~~~~~~~~ 613 (662)
.|++++|++.+.+..
T Consensus 18 ~g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 18 AGNYEEALELYKEAI 32 (69)
T ss_dssp TTSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555433
No 427
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.98 E-value=47 Score=28.86 Aligned_cols=31 Identities=10% Similarity=0.104 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006071 89 WDEDMFEVLIESYGKKGIVQESVKIFDIMKQ 119 (662)
Q Consensus 89 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 119 (662)
|++.++..++.++...|+.++|.++..++..
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666666666666666666666666666655
No 428
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=54.09 E-value=2.1e+02 Score=28.03 Aligned_cols=52 Identities=19% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHhcCChhHHHHHHHHHhhCCCCCCHHh----HHHHHHHHH--hcCChHHHHHHHHH
Q 006071 423 GHSKEGNPDSAFEIVKIMGRRGVPRDADA----YICLIESYL--RKGEPADAKTALDS 474 (662)
Q Consensus 423 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~l~~~~~--~~~~~~~a~~~~~~ 474 (662)
.+.+.+++..|.++|+.+.+...+++... |..+..+|. ..-++++|.+.++.
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 44556677777777777666543333322 233333332 23345566666554
No 429
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=53.14 E-value=72 Score=26.10 Aligned_cols=59 Identities=24% Similarity=0.263 Sum_probs=30.2
Q ss_pred HHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006071 474 SMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG 533 (662)
Q Consensus 474 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (662)
.+.+.|++++..- ..++..+...++.-.|.++++.+.+.++..+..+....+..+...|
T Consensus 11 ~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 11 RLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 3334455444332 2344455555555666666666666555555555444555555554
No 430
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=53.12 E-value=1.1e+02 Score=24.20 Aligned_cols=42 Identities=24% Similarity=0.259 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhcC--CCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006071 398 KAEIFFRQLMKKG--VLDPVAFNNLIRGHSKEGNPDSAFEIVKI 439 (662)
Q Consensus 398 ~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 439 (662)
.+.++|..|...+ ...+..|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 5555555555544 34445555555555555555555555543
No 431
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=52.45 E-value=3.2e+02 Score=29.21 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=64.9
Q ss_pred HHHHHHHHhcC----CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHH----------hHHHHHHHHHhcCCh
Q 006071 400 EIFFRQLMKKG----VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDAD----------AYICLIESYLRKGEP 465 (662)
Q Consensus 400 ~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~ 465 (662)
-..+.+|...- ...+.+...++-.|....+++...++.+.+... ||.. .|...++---+-|+-
T Consensus 183 ~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 183 NDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCccH
Confidence 34455555443 345667777777788888888888888888763 3221 122222222344667
Q ss_pred HHHHHHHHHHHHc--CCCCcHHhHH-----H--HHHHHHhcCCHHHHHHHHHHHHHc
Q 006071 466 ADAKTALDSMIED--GHSPASSLFR-----S--VMESLFEDGRVQTASRVMKSMVEK 513 (662)
Q Consensus 466 ~~a~~~~~~~~~~--~~~~~~~~~~-----~--l~~~~~~~g~~~~a~~~~~~~~~~ 513 (662)
+.|+...-.+.+. .+.||...+. - +-..|...+..+.|.++|++..+.
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFev 316 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFEV 316 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhcc
Confidence 7777777666643 2445543221 1 112344566678888888888764
No 432
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=52.41 E-value=47 Score=27.19 Aligned_cols=67 Identities=13% Similarity=0.144 Sum_probs=45.5
Q ss_pred ccHHHHHHHhh--cCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChH
Q 006071 6 WTTRLQNKIRA--LVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLN 73 (662)
Q Consensus 6 w~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 73 (662)
|...+.+.++. +..-+....++.+|...+++-.|.++|+++.+.+ .+-+..|-...+..+...|-+.
T Consensus 4 ~~~~~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~-p~islaTVYr~L~~l~e~Glv~ 72 (145)
T COG0735 4 TLEDAIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEG-PGISLATVYRTLKLLEEAGLVH 72 (145)
T ss_pred hHHHHHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC-CCCCHhHHHHHHHHHHHCCCEE
Confidence 44444444444 3445566788888888877788888888888776 3556667777777777776443
No 433
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=52.39 E-value=1.7e+02 Score=28.56 Aligned_cols=61 Identities=16% Similarity=0.110 Sum_probs=29.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcccC--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPKK--GVQWDEDMFEVLIESYGKKGIVQESVKIFDIMK 118 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 118 (662)
++..+++...-.|++....+.++.+++. |..|.-.+--.+.=+|.-.|++.+|.+.|-...
T Consensus 237 sL~GLlR~H~lLgDhQat~q~idi~pk~iy~t~p~c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 237 SLLGLLRMHILLGDHQATSQILDIMPKEIYGTEPMCRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHHHHHHHHhhhhHhhhhhhhcCchhhcCcccceeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666655556666655542 111111111223334445556666666665543
No 434
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=52.02 E-value=59 Score=22.81 Aligned_cols=12 Identities=25% Similarity=0.396 Sum_probs=5.1
Q ss_pred cCCHHHHHHHHH
Q 006071 564 KGKTIAAVKLLD 575 (662)
Q Consensus 564 ~g~~~~A~~~~~ 575 (662)
.|++++|+.++.
T Consensus 19 ~g~y~eA~~~Y~ 30 (75)
T cd02678 19 AGNYEEALRLYQ 30 (75)
T ss_pred cCCHHHHHHHHH
Confidence 344444444443
No 435
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=51.83 E-value=1.6e+02 Score=25.38 Aligned_cols=57 Identities=19% Similarity=0.209 Sum_probs=39.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 006071 488 RSVMESLFEDGRVQTASRVMKSMVEKGV--------------KENLDLVAKILEALLMRGHVEEALGRIDL 544 (662)
Q Consensus 488 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 544 (662)
.+++..|.+.-+|.++.++++.+.+..+ .+.-...+..+..+...|..|.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3556677788888888888888865422 22334556667777788888888877763
No 436
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=51.32 E-value=91 Score=27.06 Aligned_cols=33 Identities=18% Similarity=0.164 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Q 006071 515 VKENLDLVAKILEALLMRGHVEEALGRIDLMMQ 547 (662)
Q Consensus 515 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 547 (662)
..|++..|..++.++...|+.++|.+...++..
T Consensus 140 ~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 140 RRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445666666666666666666666666665554
No 437
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=50.35 E-value=76 Score=22.49 Aligned_cols=12 Identities=17% Similarity=0.232 Sum_probs=5.0
Q ss_pred cCCHHHHHHHHH
Q 006071 564 KGKTIAAVKLLD 575 (662)
Q Consensus 564 ~g~~~~A~~~~~ 575 (662)
.|++++|+.++.
T Consensus 19 ~g~y~eAl~~Y~ 30 (77)
T cd02683 19 EGRFQEALVCYQ 30 (77)
T ss_pred hccHHHHHHHHH
Confidence 344444444443
No 438
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=49.97 E-value=22 Score=28.17 Aligned_cols=32 Identities=25% Similarity=0.344 Sum_probs=23.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHH
Q 006071 102 GKKGIVQESVKIFDIMKQLGVERSVKSYDALFKL 135 (662)
Q Consensus 102 ~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~ 135 (662)
...|.-.+|..+|..|.++|-+|| .|+.|+..
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~ 137 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPD--DWDALLKE 137 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCc--cHHHHHHH
Confidence 345677788899999999887776 56666654
No 439
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=49.02 E-value=2.7e+02 Score=27.30 Aligned_cols=165 Identities=9% Similarity=0.044 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHhhcCChHHHHHHHHHHHHC---------CCCCC
Q 006071 162 HTYNVMLWGFFLSLKLETAIRFFEDMKSRG--ISLDVVTYNTMINGYNRFKKMDEAEKLFAEMKEK---------NIEPT 230 (662)
Q Consensus 162 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---------~~~~~ 230 (662)
..+.-+...|..+|+++.|++.|.+...-- ..-.+..|..+|..-.-.|+|.....+..+..+. .+++-
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~k 230 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAK 230 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcc
Confidence 345667777778888888888887754321 0112334555555556667776666665555442 12333
Q ss_pred HhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC------CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCcHHH
Q 006071 231 VISYTTMIKGYVAVERADDALRIFDEMKSFD------VKPNAVTYTALLPGLCDAGKMVEVQKVLREMVERYIPPKDNSV 304 (662)
Q Consensus 231 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 304 (662)
...+..+.....+ ++..|.+.|-...... +.|...+....+.+++..++-+--..+.....-..+..-.+..
T Consensus 231 l~C~agLa~L~lk--kyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr~~Lk~~vi~n~~Fk~flel~Pql 308 (466)
T KOG0686|consen 231 LKCAAGLANLLLK--KYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDRQDLKLNVIKNESFKLFLELEPQL 308 (466)
T ss_pred hHHHHHHHHHHHH--HHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCHHHHHHHHHcchhhhhHHhcChHH
Confidence 4444444444433 6666666554432111 3444444444444554444433322222211111111114455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHh
Q 006071 305 FMKLLGVQCKSGHLNAAADVLKAMIR 330 (662)
Q Consensus 305 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 330 (662)
+..+...| .+++...+++++++..
T Consensus 309 r~il~~fy--~sky~~cl~~L~~~k~ 332 (466)
T KOG0686|consen 309 REILFKFY--SSKYASCLELLREIKP 332 (466)
T ss_pred HHHHHHHh--hhhHHHHHHHHHHhcc
Confidence 55555544 3567888888887754
No 440
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.23 E-value=60 Score=21.75 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=12.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHH
Q 006071 129 YDALFKLILRRGRYMMAKRYFNKML 153 (662)
Q Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~~~ 153 (662)
.-.+|.++...|++++|.+.+..+.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444555555555555555555543
No 441
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.85 E-value=2.9e+02 Score=27.08 Aligned_cols=63 Identities=13% Similarity=0.030 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHhhC--CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHH
Q 006071 415 VAFNNLIRGHSKEGNPDSAFEIVKIMGRR--GVPRDADAYICLIESYLRKGEPADAKTALDSMIE 477 (662)
Q Consensus 415 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 477 (662)
..+.-+.+.|...|+++.|++.+.+.+.. ...-....|..++..-.-.|+|.....+..+...
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s 215 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES 215 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence 45667777777788888888877775542 1112234555556666666777777777777664
No 442
>PRK12798 chemotaxis protein; Reviewed
Probab=46.61 E-value=3e+02 Score=27.18 Aligned_cols=185 Identities=14% Similarity=0.097 Sum_probs=109.0
Q ss_pred cCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHH-hcCChHHHHHHHHHHHHcCCCCcH----HhHHHHHHHHHhcCCHH
Q 006071 427 EGNPDSAFEIVKIMGRRGVPRDADAYICLIESYL-RKGEPADAKTALDSMIEDGHSPAS----SLFRSVMESLFEDGRVQ 501 (662)
Q Consensus 427 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~ 501 (662)
.|+..++.+.+..+.....++....|-.|+.+-. ...++..|+.+|+...=. .|-. ..+..-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5889999999988877767777777877777644 456789999999988632 3432 23333344567789999
Q ss_pred HHHHHHHHHHHc-CCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHH-----HHHHHHhccCCHHHHHHHH
Q 006071 502 TASRVMKSMVEK-GVKENLDLV-AKILEALLMRGHVEEALGRIDLMMQSGSVPNFD-----SLLSVLSEKGKTIAAVKLL 574 (662)
Q Consensus 502 ~a~~~~~~~~~~-~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~-----~~~~~~~~~g~~~~A~~~~ 574 (662)
++..+-.....+ ...|-...| ..+...+.+.++-..- +.+..++. ..+|+.. .+...-.-.|+.+-|.-..
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~-~~l~~~ls-~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As 280 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD-ARLVEILS-FMDPERQRELYLRIARAALIDGKTELARFAS 280 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH-HHHHHHHH-hcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888777777665 223322222 3344444444422211 22334443 1344421 1222223478999998888
Q ss_pred HHHhcCCCCCChhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHcCC
Q 006071 575 DFCLGRDCIIDLASYEKVLDAL-----LAAGKTLNAYSILFKIMEKGG 617 (662)
Q Consensus 575 ~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~ 617 (662)
+++.......+. .. ..+..| .-..+.++|.+.+.++.....
T Consensus 281 ~~A~~L~~~~~~-~~-~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L 326 (421)
T PRK12798 281 ERALKLADPDSA-DA-ARARLYRGAALVASDDAESALEELSQIDRDKL 326 (421)
T ss_pred HHHHHhccCCCc-ch-HHHHHHHHHHccCcccHHHHHHHHhcCChhhC
Confidence 888776422221 11 122222 235678888888888766544
No 443
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=46.60 E-value=1.4e+02 Score=23.33 Aligned_cols=22 Identities=18% Similarity=0.015 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHH
Q 006071 591 KVLDALLAAGKTLNAYSILFKI 612 (662)
Q Consensus 591 ~l~~~~~~~g~~~~A~~~~~~~ 612 (662)
.-+.++-..|+.++|++.|+..
T Consensus 105 sra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 105 SRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHhcCChHHHHHHHHHH
Confidence 3456666788888888887763
No 444
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=46.50 E-value=2.7e+02 Score=26.53 Aligned_cols=113 Identities=14% Similarity=0.199 Sum_probs=50.4
Q ss_pred hHHHHHHHHHHHHcCCCCcHHhHHHHHHHHH------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 465 PADAKTALDSMIEDGHSPASSLFRSVMESLF------EDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 465 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
++++..++++....+. |........+.++- ..-+|.....+|+.+....+.|-+..-..+. +....-++.+
T Consensus 272 I~eg~all~rA~~~~~-pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~apSPvV~LNRAVA--la~~~Gp~ag 348 (415)
T COG4941 272 IDEGLALLDRALASRR-PGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQAAPSPVVTLNRAVA--LAMREGPAAG 348 (415)
T ss_pred HHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHhCCCCeEeehHHHH--HHHhhhHHhH
Confidence 3455555555555443 44444444444432 1234555555555555554444222221111 2222234444
Q ss_pred HHHHHHHHhC----CCCCCHHHHHHHHhccCCHHHHHHHHHHHhcC
Q 006071 539 LGRIDLMMQS----GSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGR 580 (662)
Q Consensus 539 ~~~~~~~~~~----~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 580 (662)
+..++.+... ++.+-...-.+.|.+.|+.++|...|++++..
T Consensus 349 La~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~L 394 (415)
T COG4941 349 LAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIAL 394 (415)
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHh
Confidence 4444444332 22222333344455555555555555555554
No 445
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=45.82 E-value=74 Score=19.93 Aligned_cols=26 Identities=27% Similarity=0.438 Sum_probs=10.6
Q ss_pred CChhHHHHHHHHHHHcCCCcCHHhHH
Q 006071 105 GIVQESVKIFDIMKQLGVERSVKSYD 130 (662)
Q Consensus 105 g~~~~A~~~~~~~~~~g~~~~~~~~~ 130 (662)
|-..++...++.|.+.|+..+...+.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~ 41 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIE 41 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHH
Confidence 33334444444444444433333333
No 446
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.67 E-value=85 Score=21.07 Aligned_cols=50 Identities=20% Similarity=0.133 Sum_probs=26.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHH-----HHhcCCcchhHH
Q 006071 593 LDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAG-----LNQEGNTKQADI 642 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~ 642 (662)
+..+...|++-+|-++++.+-.....+....+..||.. ..+.|+.+.|.+
T Consensus 6 ~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~ 60 (62)
T PF03745_consen 6 GIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARR 60 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHH
T ss_pred HHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 34556677777777777776654333333344444433 344566666543
No 447
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.15 E-value=1.3e+02 Score=22.47 Aligned_cols=40 Identities=13% Similarity=-0.031 Sum_probs=22.5
Q ss_pred HHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 006071 572 KLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFK 611 (662)
Q Consensus 572 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 611 (662)
+.++++-..+....+..+..|+-.|.+.|+.+.|+..|+.
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet 97 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET 97 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH
Confidence 3444444444333444444666666677777777766665
No 448
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=44.62 E-value=2.4e+02 Score=25.51 Aligned_cols=40 Identities=10% Similarity=0.047 Sum_probs=20.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHH
Q 006071 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLI 136 (662)
Q Consensus 97 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~ 136 (662)
++....+.|+++++...+.++...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3444555566666666666666555455555555444444
No 449
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=44.50 E-value=2.6e+02 Score=25.80 Aligned_cols=26 Identities=31% Similarity=0.111 Sum_probs=15.8
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHH
Q 006071 412 LDPVAFNNLIRGHSKEGNPDSAFEIV 437 (662)
Q Consensus 412 ~~~~~~~~l~~~~~~~~~~~~a~~~~ 437 (662)
.++.....+...|.+.|++.+|...|
T Consensus 88 Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 88 GDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp --HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhccHHHHHHHH
Confidence 45666667777777777777666554
No 450
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=43.80 E-value=55 Score=22.08 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=18.7
Q ss_pred HHHHHHHhcCC-CHHHHHHHHHHHHHcCCCCCCH
Q 006071 24 NLVYNVLHGAK-NSEHALQFFRWVERAGLFNHDR 56 (662)
Q Consensus 24 ~~l~~~l~~~~-~~~~A~~~~~~~~~~~~~~~~~ 56 (662)
..-...|...+ |++.|+..|..+...+.+|++.
T Consensus 28 ~~s~~cLe~~~Wd~~~Al~~F~~lk~~~~IP~eA 61 (63)
T smart00804 28 EYSQMCLEDNNWDYERALKNFTELKSEGSIPPEA 61 (63)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCChhh
Confidence 33334444444 6777777777766655455543
No 451
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=43.62 E-value=52 Score=32.60 Aligned_cols=106 Identities=12% Similarity=0.017 Sum_probs=77.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHH
Q 006071 388 QHLCHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPAD 467 (662)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 467 (662)
..+...+.++.|..++.++++..+.....|..-..++.+.+++..|+.=+..+.+..+. -...|..=..++...+.+.+
T Consensus 12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~~~~~ 90 (476)
T KOG0376|consen 12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALGEFKK 90 (476)
T ss_pred hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHHHHHH
Confidence 34456678999999999999998877777777778889999999998888887775411 23444444556666677788
Q ss_pred HHHHHHHHHHcCCCCcHHhHHHHHHHHHh
Q 006071 468 AKTALDSMIEDGHSPASSLFRSVMESLFE 496 (662)
Q Consensus 468 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 496 (662)
|...|+.... +.|+..-+...+.-|..
T Consensus 91 A~~~l~~~~~--l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 91 ALLDLEKVKK--LAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHhhh--cCcCcHHHHHHHHHHHH
Confidence 8888877764 56888777777766644
No 452
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.78 E-value=4e+02 Score=27.56 Aligned_cols=51 Identities=14% Similarity=0.017 Sum_probs=34.1
Q ss_pred cCCCHHHHHHHHHHHHHcCCC----------CCCHHhHHHHHHHHHhcCChHHHHHHHHhc
Q 006071 32 GAKNSEHALQFFRWVERAGLF----------NHDRETHLKMIEILGRVGKLNHARCILLDM 82 (662)
Q Consensus 32 ~~~~~~~A~~~~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 82 (662)
....+++|..-|.-+...... |-...++..+..++...|+.+.+..+.++.
T Consensus 250 hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~ 310 (665)
T KOG2422|consen 250 HSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERG 310 (665)
T ss_pred cchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 345788888888877665411 223345666677888888888887776653
No 453
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=42.41 E-value=2.5e+02 Score=25.02 Aligned_cols=100 Identities=16% Similarity=0.114 Sum_probs=56.0
Q ss_pred CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHhCCCCCC--H
Q 006071 480 HSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGV-KENLDLV--AKILEALLMRGHVEEALGRIDLMMQSGSVPN--F 554 (662)
Q Consensus 480 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~--~ 554 (662)
+.+...-++.|+--|.....+.+|.+.|..-..... ..+...+ ..-+......|+.++|++.+..+...-++-+ .
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l 101 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNREL 101 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhH
Confidence 445555566666666555555666655554332211 2344444 3456677889999999988776643222222 1
Q ss_pred HHHHH-----HHhccCCHHHHHHHHHHHhc
Q 006071 555 DSLLS-----VLSEKGKTIAAVKLLDFCLG 579 (662)
Q Consensus 555 ~~~~~-----~~~~~g~~~~A~~~~~~~~~ 579 (662)
...+. =+.+.|..++|+++++.-+.
T Consensus 102 ~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 102 FFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 11111 12367888888888874444
No 454
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=41.61 E-value=4.2e+02 Score=30.59 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=96.5
Q ss_pred HHhcCChhHHHH------HHHHHHhc-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh-------hCCCCCCHHhHHHH
Q 006071 390 LCHNGQTGKAEI------FFRQLMKK-GVLDPVAFNNLIRGHSKEGNPDSAFEIVKIMG-------RRGVPRDADAYICL 455 (662)
Q Consensus 390 ~~~~~~~~~a~~------~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-------~~~~~~~~~~~~~l 455 (662)
....+.+.++.+ ++...... .+.....|..+...+-+.++.++|...-.... ..+-+-+...|..+
T Consensus 942 ~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nl 1021 (1236)
T KOG1839|consen 942 ALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNL 1021 (1236)
T ss_pred hhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHH
Confidence 334455555555 66643333 36677788999999999999999988765432 22222344566677
Q ss_pred HHHHHhcCChHHHHHHHHHHHHc-----CC-CCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCC--CCHHH
Q 006071 456 IESYLRKGEPADAKTALDSMIED-----GH-SPA-SSLFRSVMESLFEDGRVQTASRVMKSMVEK-----GVK--ENLDL 521 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~--~~~~~ 521 (662)
.-.+...++...|...+.+.... |- .|. ..+++.+-..+...++++.|.++++.+... +++ .+..+
T Consensus 1022 al~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~ 1101 (1236)
T KOG1839|consen 1022 ALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALS 1101 (1236)
T ss_pred HHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhH
Confidence 66667777888887777776542 21 233 333344333344557889999999888764 221 24556
Q ss_pred HHHHHHHHHhCCCHHHHHHHHH
Q 006071 522 VAKILEALLMRGHVEEALGRID 543 (662)
Q Consensus 522 ~~~l~~~~~~~g~~~~A~~~~~ 543 (662)
+..+.+.+...+++..|+...+
T Consensus 1102 ~~~~a~l~~s~~dfr~al~~ek 1123 (1236)
T KOG1839|consen 1102 YHALARLFESMKDFRNALEHEK 1123 (1236)
T ss_pred HHHHHHHHhhhHHHHHHHHHHh
Confidence 6777777777777777665543
No 455
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=41.59 E-value=2.7e+02 Score=25.20 Aligned_cols=40 Identities=15% Similarity=0.068 Sum_probs=18.2
Q ss_pred HHHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHH
Q 006071 420 LIRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESY 459 (662)
Q Consensus 420 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 459 (662)
+++.....++++++...++.+...+...+..-.+.+..+|
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvay 46 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAY 46 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHH
Confidence 3344445555555555555555554444444444443333
No 456
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=41.54 E-value=1.2e+02 Score=21.37 Aligned_cols=15 Identities=20% Similarity=0.182 Sum_probs=6.8
Q ss_pred ccCCHHHHHHHHHHH
Q 006071 563 EKGKTIAAVKLLDFC 577 (662)
Q Consensus 563 ~~g~~~~A~~~~~~~ 577 (662)
..|++++|+.++..+
T Consensus 18 ~~g~y~eA~~~Y~~a 32 (76)
T cd02681 18 QEGRYSEAVFYYKEA 32 (76)
T ss_pred HccCHHHHHHHHHHH
Confidence 344444444444433
No 457
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.44 E-value=1.4e+02 Score=27.34 Aligned_cols=55 Identities=11% Similarity=-0.009 Sum_probs=38.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CcHhhHHHHHHHHHhcCCcchhHHH
Q 006071 589 YEKVLDALLAAGKTLNAYSILFKIMEK----GGV-TDWKSSDKLIAGLNQEGNTKQADIL 643 (662)
Q Consensus 589 ~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~ 643 (662)
...++..|++.|++++|.++|+.+... +.. ........+..|+...|+.++....
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 346888888999999999999887532 211 1333344588888889988887433
No 458
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=41.32 E-value=1.9e+02 Score=28.81 Aligned_cols=26 Identities=12% Similarity=0.126 Sum_probs=17.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 593 LDALLAAGKTLNAYSILFKIMEKGGV 618 (662)
Q Consensus 593 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 618 (662)
+...++.+++.-|..+-+++++.+..
T Consensus 307 M~~~~K~KNf~tAa~FArRLLel~p~ 332 (422)
T PF06957_consen 307 MSQAFKLKNFITAASFARRLLELNPS 332 (422)
T ss_dssp HHHCCCTTBHHHHHHHHHHHHCT--S
T ss_pred HHHHHHhccHHHHHHHHHHHHHcCCC
Confidence 34445778888888888888876543
No 459
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=41.28 E-value=1.1e+02 Score=21.56 Aligned_cols=12 Identities=33% Similarity=0.476 Sum_probs=5.0
Q ss_pred cCCHHHHHHHHH
Q 006071 564 KGKTIAAVKLLD 575 (662)
Q Consensus 564 ~g~~~~A~~~~~ 575 (662)
.|++++|..++.
T Consensus 19 ~g~y~eA~~lY~ 30 (75)
T cd02684 19 RGDAAAALSLYC 30 (75)
T ss_pred hccHHHHHHHHH
Confidence 344444444443
No 460
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.19 E-value=1.5e+02 Score=32.18 Aligned_cols=129 Identities=16% Similarity=0.088 Sum_probs=69.8
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHH
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEA 538 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 538 (662)
+..+|+.+.|++...++ -+..+|..|.......|+.+-|+..|++... |..|...|.-.|+.++-
T Consensus 653 aLe~gnle~ale~akkl------dd~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL 717 (1202)
T KOG0292|consen 653 ALECGNLEVALEAAKKL------DDKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKL 717 (1202)
T ss_pred ehhcCCHHHHHHHHHhc------CcHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHH
Confidence 45667777777665554 3556777777777777887777777776543 34444556666776665
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 539 LGRIDLMMQSGSVPNFDSLLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 539 ~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
.++.+... ...|.......-.-.|+.++=..+++.+=. -+..|. .-...|.-++|.++.+++-.
T Consensus 718 ~Km~~iae---~r~D~~~~~qnalYl~dv~ervkIl~n~g~-----~~layl----ta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 718 SKMMKIAE---IRNDATGQFQNALYLGDVKERVKILENGGQ-----LPLAYL----TAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHHHH---hhhhhHHHHHHHHHhccHHHHHHHHHhcCc-----ccHHHH----HHhhcCcHHHHHHHHHhhcc
Confidence 55443332 222222211111224677776666662211 122221 11235666667666666554
No 461
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=41.10 E-value=1.6e+02 Score=22.47 Aligned_cols=12 Identities=8% Similarity=-0.177 Sum_probs=4.9
Q ss_pred hhHHHHHHHHHH
Q 006071 142 YMMAKRYFNKML 153 (662)
Q Consensus 142 ~~~A~~~~~~~~ 153 (662)
.++|..+.+.+.
T Consensus 22 H~EA~tIa~wL~ 33 (116)
T PF09477_consen 22 HQEANTIADWLE 33 (116)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 462
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=40.57 E-value=2.7e+02 Score=24.97 Aligned_cols=17 Identities=6% Similarity=0.049 Sum_probs=8.1
Q ss_pred hcCChHHHHHHHHHHHH
Q 006071 461 RKGEPADAKTALDSMIE 477 (662)
Q Consensus 461 ~~~~~~~a~~~~~~~~~ 477 (662)
..+++.+|+.+|++...
T Consensus 166 ~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444555555554443
No 463
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=39.97 E-value=3.9e+02 Score=26.59 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=18.2
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHH
Q 006071 340 YGILIENFCKAEMYDRAIKLLDKL 363 (662)
Q Consensus 340 ~~~l~~~~~~~~~~~~a~~~~~~~ 363 (662)
...+|+-|...|+..+..+.++++
T Consensus 348 ~~~IIqEYFlsgDt~Evi~~L~DL 371 (645)
T KOG0403|consen 348 LTPIIQEYFLSGDTPEVIRSLRDL 371 (645)
T ss_pred hHHHHHHHHhcCChHHHHHHHHHc
Confidence 345778888888888888887765
No 464
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=39.61 E-value=75 Score=29.51 Aligned_cols=29 Identities=28% Similarity=0.381 Sum_probs=15.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 006071 235 TTMIKGYVAVERADDALRIFDEMKSFDVK 263 (662)
Q Consensus 235 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 263 (662)
+..|....+.||+++|+.++++..+.|+.
T Consensus 261 ~~aI~~AVk~gDi~KAL~LldEAe~LG~~ 289 (303)
T PRK10564 261 NQAIKQAVKKGDVDKALKLLDEAERLGST 289 (303)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCc
Confidence 34555555555555555555555555543
No 465
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=39.48 E-value=1.5e+02 Score=21.63 Aligned_cols=15 Identities=33% Similarity=0.414 Sum_probs=7.1
Q ss_pred cCChhHHHHHHHHHh
Q 006071 427 EGNPDSAFEIVKIMG 441 (662)
Q Consensus 427 ~~~~~~a~~~~~~~~ 441 (662)
.|+.+.|.+++..+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 466
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=39.21 E-value=2.1e+02 Score=27.10 Aligned_cols=95 Identities=14% Similarity=0.123 Sum_probs=47.3
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALDSMIEDGH-SP--ASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKIL 526 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 526 (662)
..|.-=.+-|.+..++..|...|.+.++... .| +.+.|+.-..+-...|++..|+.-....+..++. ....|..-.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~A 160 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGA 160 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhh
Confidence 3444455556666666666666666554321 11 2233333333344455666666555555554444 233333344
Q ss_pred HHHHhCCCHHHHHHHHHHH
Q 006071 527 EALLMRGHVEEALGRIDLM 545 (662)
Q Consensus 527 ~~~~~~g~~~~A~~~~~~~ 545 (662)
.|+....++++|+...++.
T Consensus 161 kc~~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 161 KCLLELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 5555555556665555444
No 467
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=38.78 E-value=1.4e+02 Score=21.07 Aligned_cols=16 Identities=19% Similarity=0.189 Sum_probs=8.5
Q ss_pred hcCCHHHHHHHHHHHH
Q 006071 598 AAGKTLNAYSILFKIM 613 (662)
Q Consensus 598 ~~g~~~~A~~~~~~~~ 613 (662)
+.|++.+|+..+++..
T Consensus 18 ~~gr~~eAi~~Y~~aI 33 (75)
T cd02682 18 KEGNAEDAITNYKKAI 33 (75)
T ss_pred hcCCHHHHHHHHHHHH
Confidence 4555555555555533
No 468
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.63 E-value=2.9e+02 Score=24.65 Aligned_cols=108 Identities=19% Similarity=0.215 Sum_probs=65.5
Q ss_pred HHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCc---HHh--HHHHHHHHHhcCCHHHHHHHHHH
Q 006071 435 EIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPA---SSL--FRSVMESLFEDGRVQTASRVMKS 509 (662)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~--~~~l~~~~~~~g~~~~a~~~~~~ 509 (662)
+..+++.. +.+...-++.|+--|.-...+.+|...|..- .|+.|. ..+ -..-+......|++++|++....
T Consensus 14 ~w~~~~~~--~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e--~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~ 89 (228)
T KOG2659|consen 14 EWEEQLMK--VSVMREDLNRLVMNYLVHEGYVEAAEKFAKE--SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQ 89 (228)
T ss_pred hhHHHHhc--cCcchhhHHHHHHHHHHhccHHHHHHHhccc--cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHH
Confidence 33444444 3455566666666666666666666655543 355552 222 23445667889999999999988
Q ss_pred HHHcCCCCCHHHHHHHH----HHHHhCCCHHHHHHHHHHHH
Q 006071 510 MVEKGVKENLDLVAKIL----EALLMRGHVEEALGRIDLMM 546 (662)
Q Consensus 510 ~~~~~~~~~~~~~~~l~----~~~~~~g~~~~A~~~~~~~~ 546 (662)
+...-+..|...+-.+. --+.+.|..++|+++.+.-+
T Consensus 90 l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~L 130 (228)
T KOG2659|consen 90 LNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKL 130 (228)
T ss_pred hChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHc
Confidence 76553444543332222 22568888999998877544
No 469
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=38.43 E-value=6.3e+02 Score=28.58 Aligned_cols=367 Identities=11% Similarity=0.008 Sum_probs=0.0
Q ss_pred HHHhhcCChHHHHHHHHHHHHC------CCCCCHhhHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCCCHHHHHHHHH
Q 006071 204 NGYNRFKKMDEAEKLFAEMKEK------NIEPTVISYTTMIKGYVAVER---ADDALRIFDEMKSFDVKPNAVTYTALLP 274 (662)
Q Consensus 204 ~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 274 (662)
+++...+.++.|...|+++... |.+.--..=-+++.-....|+ +++|+.-|+.+... +.-+.-|..-.-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 560 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKAL 560 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHH
Q ss_pred HHHhCCCHHHHHHHHHHHHHcCCCC----------------------CcHHHHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006071 275 GLCDAGKMVEVQKVLREMVERYIPP----------------------KDNSVFMKLLGVQCKSGHLNAAADVLKAMIRLS 332 (662)
Q Consensus 275 ~~~~~g~~~~a~~~~~~~~~~~~~~----------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 332 (662)
.|-+.|++++-++.+.-..++.... .....|..++-...-..-...-.+-|-+.....
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHK 640 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhh
Q ss_pred CCCChhhHHHHHHHHHcCCcHHHHHHHHHHHHHhhhhccCCCCCCCccccHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 006071 333 IPTEAGHYGILIENFCKAEMYDRAIKLLDKLVEKEIILRPQSTLDMEASSYNPMIQHLCHNGQTGKAEIFFRQLMKKGVL 412 (662)
Q Consensus 333 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 412 (662)
..+...++-...-.-.+...++--+..|....-.-...-......++..+.....-+.+..|.++-+.+....+.+.-..
T Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (932)
T PRK13184 641 QQATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWDLRDYRALADIFYVACDLGNWEFFSQFSDILAEVSDE 720 (932)
T ss_pred ccCCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhhcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh
Q ss_pred CHHHHHHH-------------HHHHHhcCChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 006071 413 DPVAFNNL-------------IRGHSKEGNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPADAKTALDSMIEDG 479 (662)
Q Consensus 413 ~~~~~~~l-------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 479 (662)
-..+-+.+ +.++....+++++.+.+.......+ ...+..++.-..-.++.+....+.+.+....
T Consensus 721 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (932)
T PRK13184 721 ITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLI---LYAFDLFAIQALLDEEGESIIQLLQLIYDYV 797 (932)
T ss_pred ccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHH---HHHHHHHHHHHHHhccchHHHHHHHHHHhcc
Q ss_pred CCCcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 006071 480 HSPAS--SLFRSVMESLFEDGRVQTASRVMKSMVEK-GVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS 556 (662)
Q Consensus 480 ~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 556 (662)
.+... .....-+.+|.-..++++|-+++...-.. ........+-....-+.-.++-+-|...|....+.-.-|. .-
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 876 (932)
T PRK13184 798 SEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYLALTEDREAAKAHFSGCREDALFPR-SL 876 (932)
T ss_pred CChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHHHhcCchhHHHHHHhhccccccCcc-hh
Q ss_pred HHHHHhccCCHHHHHHHHHH
Q 006071 557 LLSVLSEKGKTIAAVKLLDF 576 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~ 576 (662)
....+.-.|..++...++++
T Consensus 877 ~~~~~~~~~~~~~~~~~~~~ 896 (932)
T PRK13184 877 DGDIFDYLGKISDNLSWWEK 896 (932)
T ss_pred hccccchhccccccccHHHH
No 470
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=38.37 E-value=6.6e+02 Score=28.78 Aligned_cols=178 Identities=11% Similarity=0.010 Sum_probs=88.5
Q ss_pred HhhcCCCCChHHHHHHHhcCCCHHHHHHHHHHHHHcCCCCC-CHHhHHHHHHHHHhcCChHHHHHHHHhcccCCCCCCHH
Q 006071 14 IRALVPQFDHNLVYNVLHGAKNSEHALQFFRWVERAGLFNH-DRETHLKMIEILGRVGKLNHARCILLDMPKKGVQWDED 92 (662)
Q Consensus 14 ~~~~~~~~~~~~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 92 (662)
++.+-|.....+..+-+..+.++....++...... . ... .+..--.+..+|...|...+|+..|.+... |+....
T Consensus 879 i~~Llpssei~vfpe~lfg~cqy~~lqdy~~llh~-w-c~vlk~v~rfmlg~~yl~tge~~kAl~cF~~a~S-g~ge~~- 954 (1480)
T KOG4521|consen 879 IRALLPSSEILVFPERLFGQCQYKVLQDYLNLLHS-W-CRVLKPVIRFMLGIAYLGTGEPVKALNCFQSALS-GFGEGN- 954 (1480)
T ss_pred HHHhccCCcceeehhhhhcchhHHHHHHHHHHhhh-h-hhhhHHHHHHhhheeeecCCchHHHHHHHHHHhh-ccccHH-
Confidence 34444444444555555555566655555543321 0 111 111122233456677888888888887765 222121
Q ss_pred HHHHHHHHH-HhcCChhHHHHHHHHHHHcCCCcC-----HHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcC----HH
Q 006071 93 MFEVLIESY-GKKGIVQESVKIFDIMKQLGVERS-----VKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPT----RH 162 (662)
Q Consensus 93 ~~~~l~~~~-~~~g~~~~A~~~~~~~~~~g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~ 162 (662)
....++... -+..+ ...|-.|. ..-|..+++.+-+.+-.+.+.++-...++. .+++ ..
T Consensus 955 aL~~lv~~~~p~~~s-----------v~dG~t~s~e~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~-l~dd~ps~a~ 1022 (1480)
T KOG4521|consen 955 ALRKLVYFLLPKRFS-----------VADGKTPSEELTALHYYLKVVRLLEEHNHAEEVCQLAVKAIEN-LPDDNPSVAL 1022 (1480)
T ss_pred HHHHHHHHhcCCCCc-----------hhcCCCCCchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCCcchhHHH
Confidence 111111111 10000 01121121 234667778888888888888887777664 2222 33
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHhhcCChH
Q 006071 163 TYNVMLWGFFLSLKLETAIRFFEDMKSRGISLDV----VTYNTMINGYNRFKKMD 213 (662)
Q Consensus 163 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~~ 213 (662)
+++.+.+.....|.+-+|...+-. . ||. .+...++-.+..+|.++
T Consensus 1023 ~~t~vFnhhldlgh~~qAy~ai~~---n---pdserrrdcLRqlvivLfecg~l~ 1071 (1480)
T KOG4521|consen 1023 ISTTVFNHHLDLGHWFQAYKAILR---N---PDSERRRDCLRQLVIVLFECGELE 1071 (1480)
T ss_pred HHHHHHHhhhchhhHHHHHHHHHc---C---CcHHHHHHHHHHHHHHHHhccchH
Confidence 456666666666777666554432 1 333 23445555556666543
No 471
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=37.76 E-value=30 Score=27.41 Aligned_cols=34 Identities=32% Similarity=0.657 Sum_probs=24.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCC-cHhhHHHHHHHH
Q 006071 595 ALLAAGKTLNAYSILFKIMEKGGVT-DWKSSDKLIAGL 631 (662)
Q Consensus 595 ~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~ 631 (662)
.+.+.|...+|..+|++|++.|.+| +|. .|+...
T Consensus 104 tlR~ygsk~DaY~VF~kML~~G~pPddW~---~Ll~~a 138 (140)
T PF11663_consen 104 TLRAYGSKTDAYAVFRKMLERGNPPDDWD---ALLKEA 138 (140)
T ss_pred chhhhccCCcHHHHHHHHHhCCCCCccHH---HHHHHh
Confidence 4556788888999999999988865 443 466543
No 472
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.74 E-value=3e+02 Score=24.67 Aligned_cols=141 Identities=18% Similarity=0.156 Sum_probs=69.3
Q ss_pred CCCCcHHhHHHHHHHH--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhCCCCCCHHH
Q 006071 479 GHSPASSLFRSVMESL--FEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRGHVEEALGRIDLMMQSGSVPNFDS 556 (662)
Q Consensus 479 ~~~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~ 556 (662)
++++... .++.++ ...+++++|.+.+-.- ...| ..-..++.++...|+.+.|+.+++...-....++...
T Consensus 74 ~ip~~~~---~~~~g~W~LD~~~~~~A~~~L~~p---s~~~--~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~ 145 (226)
T PF13934_consen 74 GIPPKYI---KFIQGFWLLDHGDFEEALELLSHP---SLIP--WFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALT 145 (226)
T ss_pred CCCHHHH---HHHHHHHHhChHhHHHHHHHhCCC---CCCc--ccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHH
Confidence 5544433 334443 3456677777666221 2222 2223477777778888888888776532222222223
Q ss_pred HHHHHhccCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcHhhHHHHHHHHHhcCC
Q 006071 557 LLSVLSEKGKTIAAVKLLDFCLGRDCIIDLASYEKVLDALLAAGKTLNAYSILFKIMEKGGVTDWKSSDKLIAGLNQEGN 636 (662)
Q Consensus 557 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 636 (662)
+......++.+.||..+.+...+.. ....+..++..+...... ...+++++.-+..++... ++.-|...+.
T Consensus 146 ~~~~~La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~~~---~~~~~~Ll~LPl~~~EE~---~l~~~L~~~~ 216 (226)
T PF13934_consen 146 LYFVALANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEECAR---SGRLDELLSLPLDEEEEQ---WLEKYLRESP 216 (226)
T ss_pred HHHHHHHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHhhh---hhHHHHHHhCCCChHHHH---HHHHHHccCC
Confidence 3333356688888888776443321 123444455555543321 122444455444333332 3333444443
No 473
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=37.50 E-value=2.6e+02 Score=23.92 Aligned_cols=23 Identities=9% Similarity=0.111 Sum_probs=15.4
Q ss_pred HHHHHhhcCChHHHHHHHHHHHH
Q 006071 202 MINGYNRFKKMDEAEKLFAEMKE 224 (662)
Q Consensus 202 ll~~~~~~g~~~~a~~~~~~~~~ 224 (662)
.+-.|.+.|.+++|.++++....
T Consensus 117 aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 117 AVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHhcCchHHHHHHHHHHhc
Confidence 34456677777777777777665
No 474
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=37.13 E-value=1.3e+02 Score=20.96 Aligned_cols=12 Identities=17% Similarity=0.194 Sum_probs=5.0
Q ss_pred CCHHHHHHHHHH
Q 006071 600 GKTLNAYSILFK 611 (662)
Q Consensus 600 g~~~~A~~~~~~ 611 (662)
|++++|+..+..
T Consensus 20 g~~~~Al~~Y~~ 31 (75)
T cd02656 20 GNYEEALELYKE 31 (75)
T ss_pred CCHHHHHHHHHH
Confidence 444444444433
No 475
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=36.88 E-value=3.8e+02 Score=25.58 Aligned_cols=106 Identities=15% Similarity=0.101 Sum_probs=0.0
Q ss_pred HHHHHHHHhcC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhh---CCCCCCHHhH--HHHHHHHHhcCChHHHHHH
Q 006071 400 EIFFRQLMKKG---VLDPVAFNNLIRGHSKEGNPDSAFEIVKIMGR---RGVPRDADAY--ICLIESYLRKGEPADAKTA 471 (662)
Q Consensus 400 ~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~ 471 (662)
.+++....... .........++...-+.++.++|+++++++.+ ..-.|+...| ..+++++...|+..++.+.
T Consensus 58 l~lY~NFvsefe~kINplslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ 137 (380)
T KOG2908|consen 58 LQLYLNFVSEFETKINPLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKL 137 (380)
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHH
Q ss_pred HHHHHH-----cCCCCcHHhHHHHHHH--HHhcCCHHHHHH
Q 006071 472 LDSMIE-----DGHSPASSLFRSVMES--LFEDGRVQTASR 505 (662)
Q Consensus 472 ~~~~~~-----~~~~~~~~~~~~l~~~--~~~~g~~~~a~~ 505 (662)
+++..+ .+++|+.++-...+.+ |...|++....+
T Consensus 138 ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr 178 (380)
T KOG2908|consen 138 LDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYR 178 (380)
T ss_pred HHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHH
No 476
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=36.76 E-value=1e+02 Score=21.03 Aligned_cols=48 Identities=8% Similarity=-0.001 Sum_probs=25.5
Q ss_pred CCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 006071 229 PTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC 277 (662)
Q Consensus 229 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 277 (662)
|....++.++..+++..-.++++..+.+....|. .+..+|..-++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4445556666666666666666666666665552 34445544444443
No 477
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=36.29 E-value=79 Score=29.39 Aligned_cols=36 Identities=28% Similarity=0.342 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcHHhH
Q 006071 452 YICLIESYLRKGEPADAKTALDSMIEDGHSPASSLF 487 (662)
Q Consensus 452 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 487 (662)
|+..|....+.|++++|+.++++..+.|..--..+|
T Consensus 260 y~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 260 FNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 345555555666666666666666655544333333
No 478
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=36.00 E-value=1.7e+02 Score=21.33 Aligned_cols=14 Identities=14% Similarity=0.197 Sum_probs=5.9
Q ss_pred CChHHHHHHHHHHH
Q 006071 210 KKMDEAEKLFAEMK 223 (662)
Q Consensus 210 g~~~~a~~~~~~~~ 223 (662)
|+.+.|.+++..+.
T Consensus 50 g~~~~ar~LL~~L~ 63 (88)
T cd08819 50 GNESGARELLKRIV 63 (88)
T ss_pred CcHHHHHHHHHHhc
Confidence 44444444444443
No 479
>PRK12798 chemotaxis protein; Reviewed
Probab=35.99 E-value=4.5e+02 Score=26.08 Aligned_cols=71 Identities=11% Similarity=0.148 Sum_probs=36.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH--HhCCCHHHHHHHHHHHHhCCCCCCHH
Q 006071 485 SLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENL-DLVAKILEAL--LMRGHVEEALGRIDLMMQSGSVPNFD 555 (662)
Q Consensus 485 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~p~~~ 555 (662)
..|..+...-...|+.+-|...-++........+. ..-..+..+. .-..++++|++.+..+-...+.|...
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~~Dr 331 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLSERDR 331 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCChhhH
Confidence 45666666666677777777666666655211111 1111121221 23345677776666665555555533
No 480
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=34.94 E-value=1.5e+02 Score=22.78 Aligned_cols=37 Identities=24% Similarity=0.384 Sum_probs=21.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHH
Q 006071 25 LVYNVLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMI 63 (662)
Q Consensus 25 ~l~~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~ 63 (662)
.++.-|.++...++|+++.+++.+++ ..+...-+.|-
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G--EIt~e~A~eLr 102 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG--EITPEEAKELR 102 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 35556666666667777777766666 34444433333
No 481
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.51 E-value=3.5e+02 Score=25.78 Aligned_cols=96 Identities=15% Similarity=0.045 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHhhC---CCCCCHHhHHHHHHHHHhcCChHHHHHHHHHHHHcCCCCcH-HhHHH
Q 006071 414 PVAFNNLIRGHSKEGNPDSAFEIVKIMGRR---GVPRDADAYICLIESYLRKGEPADAKTALDSMIEDGHSPAS-SLFRS 489 (662)
Q Consensus 414 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~ 489 (662)
...|.-=+.-|.+..++..|...|..-.+. +...+...|+.-..+-...|++..|+.-....+. +.|+. ..+..
T Consensus 81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~--~~P~h~Ka~~R 158 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALK--LKPTHLKAYIR 158 (390)
T ss_pred HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh--cCcchhhhhhh
Confidence 345666677888899999999999887653 2233457788777777788999999888887775 34542 23333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006071 490 VMESLFEDGRVQTASRVMKSMV 511 (662)
Q Consensus 490 l~~~~~~~g~~~~a~~~~~~~~ 511 (662)
-..++....++++|..+.++..
T Consensus 159 ~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 159 GAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred hhHHHHHHHHHHHHHHHHhhhh
Confidence 3344555666677776666553
No 482
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=34.28 E-value=1.5e+02 Score=20.75 Aligned_cols=15 Identities=20% Similarity=0.268 Sum_probs=6.9
Q ss_pred cCCHHHHHHHHHHHh
Q 006071 564 KGKTIAAVKLLDFCL 578 (662)
Q Consensus 564 ~g~~~~A~~~~~~~~ 578 (662)
.|++++|+.++..++
T Consensus 21 ~g~~~eAl~~Y~~a~ 35 (77)
T smart00745 21 AGDYEEALELYKKAI 35 (77)
T ss_pred cCCHHHHHHHHHHHH
Confidence 444555544444333
No 483
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.04 E-value=4.7e+02 Score=25.74 Aligned_cols=54 Identities=11% Similarity=0.091 Sum_probs=34.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHH----HH--HHhcCCHHHHHHHHHH
Q 006071 456 IESYLRKGEPADAKTALDSMIEDGHSPASSLFRSVM----ES--LFEDGRVQTASRVMKS 509 (662)
Q Consensus 456 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~--~~~~g~~~~a~~~~~~ 509 (662)
+..+.+.+++..|..+|+++.....+|+.......+ .+ +...-++++|.+.++.
T Consensus 137 ~r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 137 ARRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 345567788888888888888765555443322222 22 2346677788877775
No 484
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=34.04 E-value=3.5e+02 Score=24.31 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=16.2
Q ss_pred HHhcCChHHHHHHHHHHHHcCCC
Q 006071 459 YLRKGEPADAKTALDSMIEDGHS 481 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~ 481 (662)
+...|+++.|+++.+-++++|.+
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~ 115 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLT 115 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCC
Confidence 45677777777777777777643
No 485
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=33.28 E-value=2.8e+02 Score=26.06 Aligned_cols=71 Identities=23% Similarity=0.353 Sum_probs=53.8
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH----------hCCCHHHH
Q 006071 216 EKLFAEMKEKNIEPTVISYTTMIKGYVAVERADDALRIFDEMKSFDVKPNAVTYTALLPGLC----------DAGKMVEV 285 (662)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~----------~~g~~~~a 285 (662)
.++++.+...++.|.-.++.-+.-.+.+.=.+.+++.+++.+.. |+.-|..++..|| -.|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-----D~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-----DPQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-----ChhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 56788888888888888887777777788888899999998875 3333666666555 36889888
Q ss_pred HHHHHH
Q 006071 286 QKVLRE 291 (662)
Q Consensus 286 ~~~~~~ 291 (662)
+++++.
T Consensus 338 mkLLQ~ 343 (370)
T KOG4567|consen 338 MKLLQN 343 (370)
T ss_pred HHHHhc
Confidence 888765
No 486
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=33.27 E-value=2.9e+02 Score=29.02 Aligned_cols=74 Identities=16% Similarity=0.226 Sum_probs=53.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHhcCC---CCHHHHHHHHHHHHhcCChh------HHHHHHHHHhhCCCCCCHHhHHH
Q 006071 384 NPMIQHLCHNGQTGKAEIFFRQLMKKGV---LDPVAFNNLIRGHSKEGNPD------SAFEIVKIMGRRGVPRDADAYIC 454 (662)
Q Consensus 384 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~------~a~~~~~~~~~~~~~~~~~~~~~ 454 (662)
.+++.+|...|++..+.++++....... .-...+|..++.+.+.|.++ .|.+.++... +.-|..||..
T Consensus 32 ~sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~al 108 (1117)
T COG5108 32 ASLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYAL 108 (1117)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHH
Confidence 4789999999999999999999988763 33457888888888888764 3444454444 3346667766
Q ss_pred HHHHHH
Q 006071 455 LIESYL 460 (662)
Q Consensus 455 l~~~~~ 460 (662)
++.+-.
T Consensus 109 l~~~sl 114 (1117)
T COG5108 109 LCQASL 114 (1117)
T ss_pred HHHhhc
Confidence 655443
No 487
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=33.07 E-value=92 Score=22.21 Aligned_cols=14 Identities=14% Similarity=-0.066 Sum_probs=6.1
Q ss_pred cCCHHHHHHHHHHH
Q 006071 564 KGKTIAAVKLLDFC 577 (662)
Q Consensus 564 ~g~~~~A~~~~~~~ 577 (662)
.|+.++|+.+|+++
T Consensus 21 ~g~~e~Al~~Y~~g 34 (79)
T cd02679 21 WGDKEQALAHYRKG 34 (79)
T ss_pred cCCHHHHHHHHHHH
Confidence 34444444444433
No 488
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=32.86 E-value=1.9e+02 Score=22.24 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=22.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHH
Q 006071 97 LIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALF 133 (662)
Q Consensus 97 l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~ 133 (662)
+++.+.++...++|+++++.|.++| ..+...-+.|-
T Consensus 67 ViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 67 VIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred HHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4566667777778888888887776 34444433333
No 489
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=32.06 E-value=1.4e+02 Score=21.11 Aligned_cols=12 Identities=17% Similarity=0.202 Sum_probs=5.4
Q ss_pred CCHHHHHHHHHH
Q 006071 600 GKTLNAYSILFK 611 (662)
Q Consensus 600 g~~~~A~~~~~~ 611 (662)
|++++|.+.+..
T Consensus 20 ~~y~eA~~~Y~~ 31 (75)
T cd02677 20 GDYEAAFEFYRA 31 (75)
T ss_pred hhHHHHHHHHHH
Confidence 444444444444
No 490
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.03 E-value=3.1e+02 Score=25.02 Aligned_cols=22 Identities=14% Similarity=0.152 Sum_probs=12.7
Q ss_pred HHHHHHHhCCCHHHHHHHHHHH
Q 006071 271 ALLPGLCDAGKMVEVQKVLREM 292 (662)
Q Consensus 271 ~ll~~~~~~g~~~~a~~~~~~~ 292 (662)
.+...|...|+++.|.++|+.+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3444555666666666666555
No 491
>PRK09462 fur ferric uptake regulator; Provisional
Probab=31.98 E-value=2.4e+02 Score=23.10 Aligned_cols=64 Identities=14% Similarity=0.149 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Q 006071 470 TALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVAKILEALLMRG 533 (662)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 533 (662)
.+-+.+.+.|++++..-...+-......+..-.|.++++.+.+.++..+..+....+..+...|
T Consensus 3 ~~~~~l~~~glr~T~qR~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~G 66 (148)
T PRK09462 3 DNNTALKKAGLKVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (148)
T ss_pred hHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCC
No 492
>COG4715 Uncharacterized conserved protein [Function unknown]
Probab=31.92 E-value=5.9e+02 Score=26.31 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=39.2
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHh
Q 006071 96 VLIESYGKKGIVQESVKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIE--PTRHTYNVMLWGFFL 173 (662)
Q Consensus 96 ~l~~~~~~~g~~~~A~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ll~~~~~ 173 (662)
..+.+++..|...+++.+.++... ....|..+...+...|....|...+-+-.+.+-+ .+......+...+..
T Consensus 308 r~v~~l~~a~~~~e~i~~~~~ea~-----~~~~yl~~v~llle~~~~~~a~~wl~~~~r~a~~q~~t~q~~q~l~el~~~ 382 (587)
T COG4715 308 REVPALASAGLQHEAIRLCEREAE-----GPGSYLDLVELLLESGEPSKAELWLARGIRTAREQLQTTQLPQTLAELKEE 382 (587)
T ss_pred HhhhhhccchhhHHHHHHHHHHhc-----CcccHHHHHHHHHhcCChhHHHHHHHHHHhhhhHhhhhhhhHHHHHHHHHh
Confidence 334444455555555555544432 2223445555555555555554433332222111 112223334444445
Q ss_pred cCCHHHHHHHHHHHHhC
Q 006071 174 SLKLETAIRFFEDMKSR 190 (662)
Q Consensus 174 ~~~~~~a~~~~~~~~~~ 190 (662)
.|++-.|.++-+....+
T Consensus 383 ~g~~~~a~~Laq~~F~r 399 (587)
T COG4715 383 EGRLGFAAELAQEAFFR 399 (587)
T ss_pred hcchHHHHHHHHHHccC
Confidence 55555555555444443
No 493
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=30.71 E-value=4.5e+02 Score=24.49 Aligned_cols=24 Identities=13% Similarity=0.032 Sum_probs=11.0
Q ss_pred HhHHHHHHHHHhcCChHHHHHHHH
Q 006071 450 DAYICLIESYLRKGEPADAKTALD 473 (662)
Q Consensus 450 ~~~~~l~~~~~~~~~~~~a~~~~~ 473 (662)
..+..+...|++.++.+.+.+...
T Consensus 116 ea~~n~aeyY~qi~D~~ng~~~~~ 139 (412)
T COG5187 116 EADRNIAEYYCQIMDIQNGFEWMR 139 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHH
Confidence 334444444555544444444433
No 494
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=30.64 E-value=1e+02 Score=27.32 Aligned_cols=57 Identities=11% Similarity=0.133 Sum_probs=43.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHcCCCCCCHHhHHHHHHHHHhcCChHHHHHHHHhcccCCC
Q 006071 29 VLHGAKNSEHALQFFRWVERAGLFNHDRETHLKMIEILGRVGKLNHARCILLDMPKKGV 87 (662)
Q Consensus 29 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 87 (662)
.+...++.+.|.++|.+++... |.....|..+...--+.|+++.|.+.+++..+.++
T Consensus 4 ~~~~~~D~~aaaely~qal~la--p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp 60 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELA--PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDP 60 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcC--chhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCc
Confidence 4556778888888888887764 66777888888888888888888888888777644
No 495
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=30.50 E-value=2.5e+02 Score=21.55 Aligned_cols=27 Identities=11% Similarity=0.183 Sum_probs=16.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhccc
Q 006071 58 THLKMIEILGRVGKLNHARCILLDMPK 84 (662)
Q Consensus 58 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 84 (662)
-|..++..|...|..++|.+++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 455566666666666666666665554
No 496
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=30.17 E-value=1.2e+02 Score=17.87 Aligned_cols=27 Identities=19% Similarity=0.089 Sum_probs=21.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006071 588 SYEKVLDALLAAGKTLNAYSILFKIME 614 (662)
Q Consensus 588 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 614 (662)
+|..+++.-...+++++|++=+++.++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 466788888888888888888887664
No 497
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=30.15 E-value=3.9e+02 Score=28.15 Aligned_cols=90 Identities=11% Similarity=0.193 Sum_probs=56.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhcccC--CCCCCHHHHHHHHHHHHhcCChh------HHHHHHHHHHHcCCCcCHHhHHHH
Q 006071 61 KMIEILGRVGKLNHARCILLDMPKK--GVQWDEDMFEVLIESYGKKGIVQ------ESVKIFDIMKQLGVERSVKSYDAL 132 (662)
Q Consensus 61 ~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~------~A~~~~~~~~~~g~~~~~~~~~~l 132 (662)
.++++|...|++-.+.++++.+... |-+.-...+|..|+.+.+.|.++ .|.+.+++.. +.-|..+|..+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~---ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQAR---LNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhh---cCCcchHHHHH
Confidence 7888999999999999998887654 22233456788888888888764 2344444443 34566677776
Q ss_pred HHHHHHcCChhHHHHHHHHHH
Q 006071 133 FKLILRRGRYMMAKRYFNKML 153 (662)
Q Consensus 133 ~~~~~~~g~~~~A~~~~~~~~ 153 (662)
+.+-..--.-.-..-++.+++
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i 130 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELI 130 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHH
Confidence 665544222223334444444
No 498
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=29.97 E-value=1.5e+02 Score=26.44 Aligned_cols=57 Identities=12% Similarity=0.118 Sum_probs=37.7
Q ss_pred HHhcCChHHHHHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006071 459 YLRKGEPADAKTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVK 516 (662)
Q Consensus 459 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 516 (662)
..+.++.+.+.+++.+..+. .+-....|..+...-.+.|+++.|.+.|++.++.++.
T Consensus 5 ~~~~~D~~aaaely~qal~l-ap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 5 LAESGDAEAAAELYNQALEL-APEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred hcccCChHHHHHHHHHHhhc-CchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 44567777777777777642 1223456666677777777777777777777766443
No 499
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=29.63 E-value=4.8e+02 Score=24.57 Aligned_cols=87 Identities=7% Similarity=0.198 Sum_probs=58.5
Q ss_pred HHHHHHHHHcCCCcCHHhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----------cCCHHHH
Q 006071 111 VKIFDIMKQLGVERSVKSYDALFKLILRRGRYMMAKRYFNKMLSEGIEPTRHTYNVMLWGFFL----------SLKLETA 180 (662)
Q Consensus 111 ~~~~~~~~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~----------~~~~~~a 180 (662)
.++|+.+.+.++.|.-.++.-+.-.+.+.=.+...+.+|+.+... ..-|..++..|+. .|++...
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD-----~~rfd~Ll~iCcsmlil~Re~il~~DF~~n 337 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD-----PQRFDFLLYICCSMLILVRERILEGDFTVN 337 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC-----hhhhHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 467888888888888888777777777777888889999988653 2225555555543 4788877
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006071 181 IRFFEDMKSRGISLDVVTYNTMINGY 206 (662)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~ll~~~ 206 (662)
.++++... +.|....-.+..-+
T Consensus 338 mkLLQ~yp----~tdi~~~l~~A~~L 359 (370)
T KOG4567|consen 338 MKLLQNYP----TTDISKMLAVADSL 359 (370)
T ss_pred HHHHhcCC----CCCHHHHHHHHHHH
Confidence 77775543 33555544444433
No 500
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=29.61 E-value=4.5e+02 Score=24.18 Aligned_cols=130 Identities=8% Similarity=-0.002 Sum_probs=84.8
Q ss_pred HhcCChhHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc-CChhHHHHHHHHHhhCCCCCCHHhHHHHHHHHHhcCChH-HH
Q 006071 391 CHNGQTGKAEIFFRQLMKKGVLDPVAFNNLIRGHSKE-GNPDSAFEIVKIMGRRGVPRDADAYICLIESYLRKGEPA-DA 468 (662)
Q Consensus 391 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a 468 (662)
.+......|+.+...++..+|.+-.+|.---..+... .++.+-++.+.++.+.+.+ +-..|..-=......|++. .-
T Consensus 54 ~~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rE 132 (318)
T KOG0530|consen 54 AKNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRE 132 (318)
T ss_pred hccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccch
Confidence 4556777888888888888877666655433333222 3566777778877776433 6666654433444456666 66
Q ss_pred HHHHHHHHHcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006071 469 KTALDSMIEDGHSPASSLFRSVMESLFEDGRVQTASRVMKSMVEKGVKENLDLVA 523 (662)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 523 (662)
+++.+.|+... .-+.+.|..---.+..-++++.-+.+..++++.++. |-..|+
T Consensus 133 Lef~~~~l~~D-aKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~-NNSAWN 185 (318)
T KOG0530|consen 133 LEFTKLMLDDD-AKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIR-NNSAWN 185 (318)
T ss_pred HHHHHHHHhcc-ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhh-ccchhh
Confidence 77888887632 346667766666677778888888888998888666 333444
Done!